Query psy627
Match_columns 89
No_of_seqs 109 out of 354
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:05:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lju_A Putative oxidoreductase 100.0 1.5E-50 5.1E-55 274.4 10.1 84 1-84 24-108 (108)
2 2jya_A AGR_C_3324P, uncharacte 100.0 9.9E-51 3.4E-55 274.6 6.8 84 1-84 16-100 (106)
3 4b0z_A RPN12, 26S proteasome r 88.7 0.2 6.7E-06 36.0 2.0 21 39-59 199-219 (229)
4 3t5v_A Nuclear mRNA export pro 86.7 0.34 1.1E-05 36.9 2.3 22 39-60 233-254 (316)
5 4b4t_T 26S proteasome regulato 83.9 0.44 1.5E-05 35.3 1.8 21 39-59 208-228 (274)
6 2yzh_A Probable thiol peroxida 78.7 2.4 8.2E-05 27.4 3.8 38 38-77 83-122 (171)
7 1ng7_A Poliovirus 3A-N, genome 75.4 1.3 4.5E-05 26.7 1.6 14 46-59 32-45 (60)
8 2hpu_A NOSL protein; alpha bet 75.0 2 6.9E-05 30.1 2.7 49 9-57 70-132 (175)
9 3jtn_A YPBH, adapter protein M 72.4 2.8 9.6E-05 26.0 2.7 19 37-55 2-20 (91)
10 2fiu_A Conserved hypothetical 70.2 3.3 0.00011 26.0 2.7 18 36-53 55-72 (99)
11 3jtp_A Adapter protein MECA 1; 70.1 3.4 0.00012 26.0 2.8 21 36-57 7-27 (98)
12 3lo3_A Uncharacterized conserv 69.7 3.7 0.00013 25.5 2.8 21 33-53 51-71 (94)
13 1evh_A WH1 domain, protein (ME 64.6 5.5 0.00019 25.8 3.0 21 35-55 84-104 (112)
14 1qc6_A EVH1 domain from ENA/VA 64.5 5.6 0.00019 26.2 3.0 22 35-56 85-106 (130)
15 1egx_A VAsp, vasodilator-stimu 64.3 5.7 0.00019 25.9 3.0 21 35-55 86-106 (115)
16 3pxi_a Adapter protein MECA 1; 64.1 3.6 0.00012 26.7 2.0 24 33-57 17-40 (111)
17 2jp2_A Spred-2, sprouty-relate 64.0 5.7 0.00019 26.4 3.0 20 36-55 98-117 (126)
18 3bsu_A Ribonuclease H1, RNAse 61.7 4.6 0.00016 23.1 1.9 18 37-54 33-50 (53)
19 3p3d_A Nucleoporin 53; structu 59.8 4.8 0.00016 27.4 2.0 22 38-59 65-86 (132)
20 1qhk_A RNAse HI, protein (ribo 59.1 5.2 0.00018 22.3 1.8 15 38-52 32-46 (47)
21 3syx_A Sprouty-related, EVH1 d 57.7 5.4 0.00018 27.1 2.0 45 8-55 66-115 (130)
22 4g2e_A Peroxiredoxin; redox pr 57.6 10 0.00035 24.3 3.3 27 38-64 68-94 (157)
23 2gjf_A Designed protein; proca 57.3 24 0.00083 20.5 4.7 28 36-63 49-76 (78)
24 2nz2_A Argininosuccinate synth 56.4 4.6 0.00016 31.5 1.7 34 41-79 154-187 (413)
25 4fle_A Esterase; structural ge 55.9 8.4 0.00029 24.6 2.7 33 25-66 8-41 (202)
26 1xod_A Spred1; sprouty, EVH1, 55.6 6.6 0.00023 25.7 2.2 21 35-55 88-108 (118)
27 4dgh_A Sulfate permease family 55.1 5.8 0.0002 24.9 1.8 15 41-55 111-125 (130)
28 1vjq_A Designed protein; struc 54.8 15 0.0005 21.4 3.5 28 36-63 41-68 (79)
29 3drn_A Peroxiredoxin, bacterio 54.4 13 0.00044 23.5 3.4 27 38-64 67-93 (161)
30 1ddw_A GLGF-domain protein hom 54.0 7.5 0.00026 25.6 2.2 20 36-55 84-103 (120)
31 2hw0_A Replicase; alpha+beta, 54.0 15 0.00051 24.0 3.7 23 43-65 87-110 (115)
32 2a4v_A Peroxiredoxin DOT5; yea 51.7 14 0.00048 23.2 3.2 27 38-64 72-98 (159)
33 1tp9_A Peroxiredoxin, PRX D (t 51.3 17 0.00058 23.2 3.6 27 38-64 75-103 (162)
34 1xvw_A Hypothetical protein RV 50.7 11 0.00039 23.4 2.6 27 38-64 74-100 (160)
35 3gkn_A Bacterioferritin comigr 50.4 11 0.00039 23.6 2.6 27 38-64 73-99 (163)
36 1psq_A Probable thiol peroxida 50.0 15 0.0005 23.4 3.1 27 38-64 78-105 (163)
37 1tif_A IF3-N, translation init 49.7 11 0.00036 23.4 2.3 33 43-75 29-63 (78)
38 1snn_A DHBP synthase, 3,4-dihy 49.7 9.9 0.00034 28.0 2.5 21 43-63 194-214 (227)
39 4gqc_A Thiol peroxidase, perox 49.7 16 0.00055 23.7 3.3 27 38-64 71-97 (164)
40 2kln_A Probable sulphate-trans 48.6 6.4 0.00022 24.7 1.2 15 41-55 110-124 (130)
41 2wfc_A Peroxiredoxin 5, PRDX5; 47.9 18 0.0006 23.7 3.3 27 38-64 71-99 (167)
42 1rz4_A Eukaryotic translation 47.5 6.3 0.00021 28.4 1.1 41 40-80 162-207 (226)
43 3ewt_E Tumor necrosis factor r 47.3 11 0.00039 18.8 1.7 14 44-57 12-25 (25)
44 1kor_A Argininosuccinate synth 47.1 9.1 0.00031 29.6 2.0 20 42-61 147-166 (400)
45 2w5f_A Endo-1,4-beta-xylanase 46.4 12 0.00042 29.7 2.7 23 38-60 241-263 (540)
46 4dgf_A Sulfate transporter sul 45.7 10 0.00035 24.0 1.8 15 41-55 114-128 (135)
47 3raz_A Thioredoxin-related pro 45.4 17 0.00058 22.4 2.8 26 38-63 61-86 (151)
48 3p7x_A Probable thiol peroxida 43.8 23 0.00077 22.5 3.3 28 38-65 81-109 (166)
49 1i2h_A PSD-ZIP45(homer-1C/VESL 41.9 17 0.0006 25.4 2.7 21 35-55 88-108 (168)
50 1mwq_A Hypothetical protein HI 41.9 17 0.00057 22.1 2.3 26 38-63 64-96 (101)
51 2p6w_A VP54, putative glycosyl 41.2 14 0.00047 27.2 2.1 20 44-63 25-44 (213)
52 3keb_A Probable thiol peroxida 40.8 18 0.00062 25.8 2.7 39 38-76 86-125 (224)
53 3ixr_A Bacterioferritin comigr 40.3 20 0.00067 23.4 2.6 27 38-64 89-115 (179)
54 4eo3_A Bacterioferritin comigr 40.3 13 0.00044 27.5 1.8 37 38-75 58-94 (322)
55 3mio_A DHBP synthase, 3,4-dihy 40.2 17 0.00057 26.3 2.4 21 42-62 175-195 (206)
56 3llo_A Prestin; STAS domain, c 39.7 7 0.00024 24.8 0.3 16 40-55 126-141 (143)
57 2d73_A Alpha-glucosidase SUSB; 38.6 16 0.00055 31.0 2.3 23 40-62 368-390 (738)
58 2cqy_A Propionyl-COA carboxyla 37.4 30 0.001 20.1 2.9 24 41-64 30-53 (108)
59 3hhl_A RPA0582; alpha-beta-bar 37.2 19 0.00064 24.1 2.1 19 34-52 87-105 (143)
60 2jpc_A SSRB; DNA binding prote 36.7 11 0.00039 20.2 0.8 19 39-57 40-58 (61)
61 3tbi_A RNA polymerase-associat 35.9 15 0.0005 24.6 1.4 15 45-59 59-73 (115)
62 3ayv_A Putative uncharacterize 35.7 26 0.0009 23.6 2.7 25 37-61 4-28 (254)
63 1tks_A 3,4-dihydroxy-2-butanon 35.5 20 0.00069 25.9 2.2 21 42-62 175-195 (204)
64 3vwc_A Serine protease inhibit 35.3 28 0.00097 24.0 2.8 36 6-41 79-123 (149)
65 1jid_A Signal recognition part 35.1 63 0.0022 21.6 4.5 26 38-63 39-64 (128)
66 3dhx_A Methionine import ATP-b 34.7 29 0.001 21.6 2.7 30 34-63 63-96 (106)
67 1k4i_A 3,4-dihydroxy-2-butanon 34.4 25 0.00085 26.0 2.6 22 42-63 193-214 (233)
68 2hiq_A Hypothetical protein YD 34.3 19 0.00065 23.8 1.8 28 28-55 48-76 (113)
69 2pwj_A Mitochondrial peroxired 33.6 40 0.0014 21.9 3.3 27 38-64 83-111 (171)
70 1n8j_A AHPC, alkyl hydroperoxi 33.1 36 0.0012 22.3 3.0 27 38-64 68-98 (186)
71 1vjf_A DNA-binding protein, pu 32.9 28 0.00097 23.5 2.5 31 33-63 4-34 (180)
72 1k92_A Argininosuccinate synth 32.8 19 0.00065 28.6 1.8 20 42-61 165-184 (455)
73 3g12_A Putative lactoylglutath 32.6 36 0.0012 20.7 2.8 28 38-65 70-97 (128)
74 2zib_A Type II antifreeze prot 32.4 20 0.00068 22.2 1.6 38 22-59 8-45 (133)
75 1hji_B NUN-protein; bacterioph 32.2 28 0.00095 17.3 1.7 12 45-56 15-26 (26)
76 3uma_A Hypothetical peroxiredo 32.2 39 0.0013 22.6 3.1 28 38-65 96-125 (184)
77 3ro8_A Endo-1,4-beta-xylanase; 32.1 29 0.001 26.2 2.7 22 39-60 58-79 (341)
78 1w32_A Endo-1,4-beta-xylanase 32.0 12 0.00043 28.1 0.6 22 40-61 58-79 (348)
79 3a24_A Alpha-galactosidase; gl 31.9 23 0.00079 29.4 2.2 25 40-64 306-330 (641)
80 1t0f_A Transposon TN7 transpos 31.7 31 0.0011 25.1 2.7 22 45-66 149-170 (276)
81 1gqe_A Release factor 2, RF2; 31.5 23 0.00078 27.7 2.0 16 49-64 153-168 (365)
82 3lor_A Thiol-disulfide isomera 31.4 38 0.0013 20.7 2.8 22 43-64 80-101 (160)
83 1mke_A WIP - N-WAsp, fusion pr 31.3 31 0.001 23.7 2.5 19 36-54 117-135 (152)
84 3op6_A Uncharacterized protein 30.4 30 0.001 22.5 2.2 20 44-63 3-22 (152)
85 2ek1_A RNA-binding protein 12; 30.3 43 0.0015 19.1 2.7 22 38-59 60-82 (95)
86 1v0l_A Endo-1,4-beta-xylanase 30.2 19 0.00065 26.7 1.3 23 39-61 58-80 (313)
87 1ta3_B Endo-1,4-beta-xylanase; 30.0 21 0.00073 26.2 1.6 25 39-63 59-83 (303)
88 1nm3_A Protein HI0572; hybrid, 29.8 49 0.0017 22.4 3.3 27 38-64 73-100 (241)
89 3ced_A Methionine import ATP-b 29.6 41 0.0014 20.7 2.7 29 34-62 62-95 (98)
90 2uwf_A Endoxylanase, alkaline 29.4 18 0.00062 27.3 1.1 25 39-63 62-86 (356)
91 1q98_A Thiol peroxidase, TPX; 29.3 16 0.00056 23.3 0.7 27 38-64 79-106 (165)
92 2ifs_A N-WAsp, wiskott-aldrich 29.2 36 0.0012 23.7 2.6 19 36-54 134-152 (169)
93 4a8x_A RNA-binding protein wit 29.0 47 0.0016 18.5 2.7 22 38-59 50-72 (88)
94 3gm5_A Lactoylglutathione lyas 28.9 52 0.0018 20.3 3.1 28 35-62 105-132 (159)
95 1r85_A Endo-1,4-beta-xylanase; 28.8 26 0.0009 26.7 2.0 26 39-64 72-97 (379)
96 3ebr_A Uncharacterized RMLC-li 28.7 30 0.001 23.2 2.0 17 42-58 134-150 (159)
97 3tsh_A Pollen allergen PHL P 4 28.7 80 0.0028 24.4 4.8 36 28-63 45-83 (500)
98 1g57_A DHBP synthase, 3,4-dihy 28.7 36 0.0012 24.7 2.6 22 42-63 182-203 (217)
99 1rw1_A Conserved hypothetical 28.6 26 0.0009 21.7 1.7 20 44-63 12-31 (114)
100 3ewl_A Uncharacterized conserv 28.5 79 0.0027 18.8 3.9 27 39-65 68-95 (142)
101 4dkx_A RAS-related protein RAB 28.4 35 0.0012 23.4 2.4 18 43-60 136-153 (216)
102 2qrr_A Methionine import ATP-b 28.3 44 0.0015 20.3 2.7 28 35-62 66-97 (101)
103 1x60_A Sporulation-specific N- 28.2 41 0.0014 19.2 2.4 31 32-62 42-76 (79)
104 3d5a_X RF1, peptide chain rele 28.1 26 0.00089 27.2 1.8 16 49-64 132-147 (354)
105 3md1_A Nuclear and cytoplasmic 28.0 52 0.0018 18.1 2.8 22 38-59 46-68 (83)
106 3n7c_A ABR034WP; nuclear pore 28.0 28 0.00097 22.9 1.8 20 35-54 95-114 (130)
107 1zbt_A RF-1, peptide chain rel 27.8 26 0.0009 27.4 1.8 16 49-64 150-165 (371)
108 1i1w_A Endo-1,4-beta-xylanase; 27.8 22 0.00077 25.9 1.4 24 39-62 60-83 (303)
109 3ln3_A Dihydrodiol dehydrogena 27.8 38 0.0013 24.5 2.6 24 44-67 199-222 (324)
110 2ebb_A Pterin-4-alpha-carbinol 27.7 34 0.0011 21.6 2.0 34 23-56 13-46 (101)
111 2ihr_1 Peptide chain release f 27.7 25 0.00087 27.4 1.7 16 49-64 141-156 (365)
112 2dep_A Xylanase B, thermostabl 27.7 22 0.00075 26.7 1.3 23 39-61 59-81 (356)
113 4f8x_A Endo-1,4-beta-xylanase; 27.3 26 0.0009 26.5 1.7 22 39-60 61-82 (335)
114 1s7i_A Hypothetical protein PA 27.3 30 0.001 22.4 1.8 17 39-55 89-105 (124)
115 2p25_A Glyoxalase family prote 27.1 86 0.0029 17.8 3.7 25 35-59 74-98 (126)
116 3ulh_A THO complex subunit 4; 26.8 52 0.0018 19.2 2.7 21 38-58 73-94 (107)
117 3cui_A EXO-beta-1,4-glucanase; 26.8 22 0.00074 25.9 1.1 23 39-61 57-79 (315)
118 1xyz_A 1,4-beta-D-xylan-xylano 26.5 24 0.00081 26.3 1.3 22 39-60 83-104 (347)
119 1n82_A Xylanase, intra-cellula 26.5 24 0.00082 26.1 1.3 23 39-61 58-80 (331)
120 1rq0_A RF-1, peptide chain rel 26.4 29 0.001 26.9 1.8 16 49-64 113-128 (342)
121 2k89_A PLA2P, PLAP, phospholip 26.2 32 0.0011 21.4 1.7 22 37-58 30-55 (80)
122 2cpi_A CCR4-NOT transcription 26.2 48 0.0017 19.9 2.5 22 38-59 66-88 (111)
123 3bs9_A Nucleolysin TIA-1 isofo 26.2 57 0.0019 18.1 2.7 21 38-58 51-72 (87)
124 2kok_A Arsenate reductase; bru 26.1 28 0.00096 21.8 1.5 21 43-63 16-36 (120)
125 2cpe_A RNA-binding protein EWS 26.1 57 0.0019 19.3 2.8 23 37-59 67-90 (113)
126 3jst_A Putative pterin-4-alpha 26.1 56 0.0019 20.3 2.9 34 23-56 16-50 (97)
127 2qsw_A Methionine import ATP-b 25.9 45 0.0015 20.3 2.4 28 35-62 66-97 (100)
128 2cs0_A Hematopoietic SH2 domai 25.9 37 0.0013 21.3 2.0 37 39-75 80-119 (119)
129 3eyt_A Uncharacterized protein 25.8 38 0.0013 20.7 2.0 22 43-64 78-99 (158)
130 1usm_A DCOH, hepatocyte nuclea 25.8 44 0.0015 20.0 2.2 31 26-56 1-32 (80)
131 3f0i_A Arsenate reductase; str 25.4 29 0.001 22.0 1.4 20 44-63 16-35 (119)
132 1je8_A Nitrate/nitrite respons 25.3 30 0.001 20.2 1.4 19 39-57 63-81 (82)
133 1nu4_A U1A RNA binding domain; 25.2 59 0.002 18.5 2.7 22 38-59 54-76 (97)
134 2zfh_A CUTA; human brain, trim 25.1 64 0.0022 22.9 3.3 30 23-54 54-87 (179)
135 3niy_A Endo-1,4-beta-xylanase; 25.0 33 0.0011 25.9 1.9 23 39-61 78-100 (341)
136 1nq6_A XYS1; glycoside hydrola 25.0 25 0.00085 25.4 1.1 22 39-60 57-78 (302)
137 2mss_A Protein (musashi1); RNA 24.9 29 0.00099 19.0 1.2 21 38-58 44-64 (75)
138 4fe3_A Cytosolic 5'-nucleotida 24.9 63 0.0022 22.5 3.3 25 38-63 140-164 (297)
139 2dgt_A RNA-binding protein 30; 24.8 57 0.002 18.6 2.6 20 39-58 48-68 (92)
140 2b9s_B DNA topoisomerase I-lik 24.8 34 0.0012 20.5 1.5 21 40-60 20-40 (62)
141 3u7b_A Endo-1,4-beta-xylanase; 24.7 24 0.00081 26.5 1.0 23 39-61 59-81 (327)
142 1mwp_A Amyloid A4 protein; hep 24.6 38 0.0013 21.8 1.8 23 39-61 33-55 (96)
143 2b3t_B RF-1, peptide chain rel 24.5 25 0.00084 27.4 1.1 16 49-64 136-151 (360)
144 3emz_A Xylanase, endo-1,4-beta 24.5 24 0.00082 26.5 1.0 23 39-61 57-79 (331)
145 3ulq_B Transcriptional regulat 24.5 17 0.00057 22.0 0.1 19 39-57 71-89 (90)
146 2rs2_A Musashi-1, RNA-binding 24.3 95 0.0033 18.5 3.7 19 38-56 70-88 (109)
147 3l78_A Regulatory protein SPX; 24.3 35 0.0012 21.5 1.7 20 44-63 12-31 (120)
148 2l5o_A Putative thioredoxin; s 24.2 60 0.0021 19.5 2.7 23 42-64 71-93 (153)
149 2dgs_A DAZ-associated protein 24.2 51 0.0018 19.0 2.3 21 38-58 55-75 (99)
150 3mng_A Peroxiredoxin-5, mitoch 23.9 79 0.0027 20.8 3.5 37 40-77 85-123 (173)
151 1ur1_A Endoxylanase; hydrolase 23.9 29 0.00098 26.5 1.3 23 39-61 81-103 (378)
152 1vl2_A Argininosuccinate synth 23.8 31 0.0011 27.1 1.6 19 42-60 164-182 (421)
153 3fz4_A Putative arsenate reduc 23.7 33 0.0011 21.8 1.5 20 44-63 15-34 (120)
154 1xvq_A Thiol peroxidase; thior 23.5 17 0.00058 23.5 0.0 27 38-64 79-106 (175)
155 1ecs_A Bleomycin resistance pr 23.5 94 0.0032 18.2 3.5 24 36-59 60-83 (126)
156 1ta3_A XIP-1, xylanase inhibit 23.4 44 0.0015 24.4 2.2 31 26-64 78-130 (274)
157 2anu_A Hypothetical protein TM 23.4 54 0.0019 22.7 2.7 24 43-66 35-58 (255)
158 3e21_A HFAF1, FAS-associated f 23.3 61 0.0021 17.8 2.3 18 43-60 19-36 (45)
159 1vki_A Hypothetical protein AT 23.2 53 0.0018 22.1 2.5 21 43-63 19-39 (181)
160 2obi_A PHGPX, GPX-4, phospholi 23.2 66 0.0023 20.5 2.9 21 43-63 97-117 (183)
161 3mdf_A Peptidyl-prolyl CIS-tra 23.1 71 0.0024 17.6 2.7 21 38-58 52-73 (85)
162 2ct6_A SH3 domain-binding glut 23.1 36 0.0012 20.9 1.5 17 47-63 29-45 (111)
163 3lwa_A Secreted thiol-disulfid 23.1 63 0.0022 20.4 2.8 26 39-64 103-130 (183)
164 2gs3_A PHGPX, GPX-4, phospholi 23.0 53 0.0018 21.1 2.4 20 44-63 100-119 (185)
165 2d1z_A Endo-1,4-beta-D-xylanas 23.0 33 0.0011 26.1 1.6 24 39-62 58-81 (436)
166 1x5u_A Splicing factor 3B subu 23.0 58 0.002 18.9 2.4 22 37-58 59-81 (105)
167 1us0_A Aldose reductase; oxido 22.9 53 0.0018 23.7 2.6 23 45-67 193-215 (316)
168 3l7t_A SMU.1112C, putative unc 22.8 1.1E+02 0.0039 17.3 4.0 25 35-59 82-106 (134)
169 3zxn_A RSBS, anti-sigma-factor 22.8 44 0.0015 21.0 1.9 16 41-56 103-118 (123)
170 3exr_A RMPD (hexulose-6-phosph 22.8 43 0.0015 23.4 2.0 22 35-56 7-28 (221)
171 2cqc_A Arginine/serine-rich sp 22.8 65 0.0022 18.2 2.5 21 38-58 60-81 (95)
172 2h5g_A Delta 1-pyrroline-5-car 22.7 47 0.0016 25.7 2.4 19 39-57 343-361 (463)
173 2k6v_A Putative cytochrome C o 22.7 76 0.0026 19.5 3.0 22 43-64 85-106 (172)
174 3mjf_A Phosphoribosylamine--gl 22.7 66 0.0023 24.2 3.2 25 40-64 126-150 (431)
175 2cpy_A RNA-binding protein 12; 22.7 39 0.0013 20.4 1.6 22 37-58 59-80 (114)
176 1twu_A Hypothetical protein YY 22.7 1.3E+02 0.0044 17.9 4.2 26 35-60 78-106 (139)
177 1lu4_A Soluble secreted antige 22.6 83 0.0028 18.3 3.1 26 39-64 60-86 (136)
178 2cq3_A RNA-binding protein 9; 22.5 72 0.0025 18.5 2.8 21 38-58 58-79 (103)
179 3lou_A Formyltetrahydrofolate 22.5 27 0.00091 25.9 0.9 29 36-64 123-151 (292)
180 2b5x_A YKUV protein, TRXY; thi 22.5 71 0.0024 18.8 2.8 21 44-64 77-97 (148)
181 1bqc_A Protein (beta-mannanase 22.5 73 0.0025 22.3 3.2 20 44-63 66-85 (302)
182 3gkx_A Putative ARSC family re 22.4 33 0.0011 21.8 1.2 20 44-63 16-35 (120)
183 2dgv_A HnRNP M, heterogeneous 22.4 65 0.0022 18.2 2.5 21 38-58 51-72 (92)
184 2gsj_A Protein PPL-2; mimosoid 22.3 56 0.0019 23.6 2.6 33 25-65 78-130 (271)
185 2v6u_A Pterin-4A-carbinolamine 22.3 54 0.0019 20.6 2.3 34 23-56 19-53 (104)
186 3buv_A 3-OXO-5-beta-steroid 4- 22.3 55 0.0019 23.7 2.6 24 45-68 202-225 (326)
187 3klo_A Transcriptional regulat 22.2 40 0.0014 22.2 1.7 20 39-58 201-220 (225)
188 2dnl_A Cytoplasmic polyadenyla 22.2 1E+02 0.0034 18.5 3.5 26 38-63 55-84 (114)
189 1afs_A 3-alpha-HSD, 3-alpha-hy 22.2 51 0.0018 23.9 2.4 24 45-68 199-222 (323)
190 2la4_A Nuclear and cytoplasmic 22.2 75 0.0026 18.3 2.8 20 39-58 67-87 (101)
191 2fc8_A NCL protein; structure 22.1 75 0.0026 18.3 2.8 21 38-58 57-78 (102)
192 1egg_A Macrophage mannose rece 22.1 53 0.0018 20.0 2.2 19 43-61 30-48 (147)
193 1xzo_A BSSCO, hypothetical pro 22.0 61 0.0021 20.1 2.5 27 38-64 73-106 (174)
194 2cvb_A Probable thiol-disulfid 22.0 53 0.0018 20.9 2.2 22 43-64 82-103 (188)
195 2afp_A Protein (SEA raven type 22.0 67 0.0023 19.2 2.6 36 26-61 9-44 (129)
196 2ywi_A Hypothetical conserved 21.9 53 0.0018 20.9 2.2 22 43-64 96-117 (196)
197 2ec1_A Nucleoporin 50 kDa; ran 21.9 65 0.0022 20.9 2.6 20 35-54 99-118 (125)
198 1xke_A RAN-binding protein 2; 21.8 61 0.0021 21.0 2.5 20 35-54 94-113 (130)
199 4a56_A PULS, pullulanase secre 21.8 39 0.0014 21.5 1.5 13 47-59 38-50 (93)
200 2dh8_A DAZ-associated protein 21.8 40 0.0014 19.7 1.5 21 39-59 62-82 (105)
201 2cpf_A RNA binding motif prote 21.7 76 0.0026 18.1 2.7 21 38-58 53-74 (98)
202 1sur_A PAPS reductase; assimil 21.6 56 0.0019 22.0 2.4 23 44-66 85-107 (215)
203 2xwp_A Sirohydrochlorin cobalt 21.5 96 0.0033 21.9 3.7 23 43-65 60-82 (264)
204 1v92_A NSFL1 cofactor P47; 3-h 21.4 36 0.0012 17.8 1.1 17 44-60 19-35 (46)
205 3zrd_A Thiol peroxidase; oxido 21.4 28 0.00095 23.4 0.7 28 38-65 114-142 (200)
206 1iqt_A AUF1, heterogeneous nuc 21.3 33 0.0011 18.7 1.0 22 37-58 43-64 (75)
207 4ghk_A Gamma-glutamyl phosphat 21.3 52 0.0018 25.2 2.4 20 39-58 347-366 (444)
208 2guk_A Hypothetical protein PG 21.3 82 0.0028 21.1 3.0 22 43-64 38-59 (120)
209 1mi3_A Xylose reductase, XR; a 21.3 60 0.002 23.5 2.6 23 45-67 200-222 (322)
210 2qbu_A Precorrin-2 methyltrans 21.2 87 0.003 21.1 3.3 30 30-64 101-130 (232)
211 1f9z_A Glyoxalase I; beta-alph 21.2 1.1E+02 0.0037 17.7 3.4 26 36-61 73-98 (135)
212 1fj7_A Nucleolin RBD1, protein 21.1 57 0.0019 18.9 2.1 22 38-59 61-82 (101)
213 1aba_A Glutaredoxin; electron 21.1 1.2E+02 0.0042 17.0 3.8 21 44-64 16-36 (87)
214 3sza_A Aldehyde dehydrogenase, 21.1 59 0.002 25.2 2.7 19 39-57 358-376 (469)
215 2cpn_A TAR RNA-binding protein 21.1 1.3E+02 0.0045 18.1 3.9 35 29-63 3-40 (89)
216 1x4g_A Nucleolysin TIAR; struc 21.0 78 0.0027 18.7 2.7 20 39-58 65-85 (109)
217 1wf0_A TDP-43, TAR DNA-binding 20.9 71 0.0024 18.0 2.5 14 38-51 45-58 (88)
218 3u5r_E Uncharacterized protein 20.9 56 0.0019 21.9 2.2 22 43-64 109-130 (218)
219 2ytc_A PRE-mRNA-splicing facto 20.9 71 0.0024 17.7 2.4 20 38-57 51-72 (85)
220 3kcq_A Phosphoribosylglycinami 20.7 42 0.0014 23.8 1.6 29 36-64 36-66 (215)
221 3sol_A Type II secretion pathw 20.7 47 0.0016 21.2 1.7 13 47-59 38-50 (94)
222 1p4w_A RCSB; solution structur 20.7 36 0.0012 21.0 1.1 19 39-57 76-94 (99)
223 3up8_A Putative 2,5-diketo-D-g 20.7 57 0.002 23.7 2.4 22 45-66 189-210 (298)
224 3ndc_A Precorrin-4 C(11)-methy 20.7 71 0.0024 22.7 2.8 24 41-64 89-112 (264)
225 1a04_A Nitrate/nitrite respons 20.5 36 0.0012 22.0 1.2 19 39-57 196-214 (215)
226 3pop_A GILR oxidase; FAD bindi 20.5 1.3E+02 0.0044 23.6 4.5 46 19-64 18-66 (501)
227 3rdw_A Putative arsenate reduc 20.4 36 0.0012 21.6 1.1 31 33-63 2-36 (121)
228 1fse_A GERE; helix-turn-helix 20.4 43 0.0015 18.3 1.3 19 39-57 53-71 (74)
229 3hdp_A Glyoxalase-I; glutathio 20.4 52 0.0018 19.3 1.8 29 34-62 77-105 (133)
230 1s1p_A Aldo-keto reductase fam 20.4 64 0.0022 23.5 2.6 24 45-68 199-222 (331)
231 1wey_A Calcipressin 1; structu 20.4 33 0.0011 22.2 0.9 16 36-51 47-62 (104)
232 1rrp_B Nuclear pore complex pr 20.3 69 0.0023 20.8 2.5 20 35-54 108-127 (134)
233 4ggi_A UDP-2,3-diacylglucosami 20.3 80 0.0027 23.0 3.1 18 46-63 234-251 (283)
234 3lp8_A Phosphoribosylamine-gly 20.3 84 0.0029 23.8 3.3 25 40-64 142-166 (442)
235 2e0n_A Precorrin-2 C20-methylt 20.3 80 0.0027 22.0 3.0 30 31-65 104-133 (259)
236 3ghj_A Putative integron gene 20.3 1.1E+02 0.0038 18.6 3.4 26 35-60 86-113 (141)
237 2x1f_A MRNA 3'-END-processing 20.3 85 0.0029 18.0 2.7 22 37-58 46-68 (96)
238 3u02_A Putative transcription- 20.3 64 0.0022 23.8 2.6 22 39-60 114-135 (252)
239 3fw9_A Reticuline oxidase; BI- 20.2 1.2E+02 0.0042 23.7 4.4 38 27-64 37-77 (495)
240 1h2v_Z 20 kDa nuclear CAP bind 20.2 78 0.0027 20.0 2.7 20 39-58 85-105 (156)
241 4grd_A N5-CAIR mutase, phospho 20.1 68 0.0023 22.6 2.6 21 43-63 26-46 (173)
242 2hzc_A Splicing factor U2AF 65 20.1 54 0.0018 18.3 1.7 20 39-58 57-76 (87)
No 1
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=100.00 E-value=1.5e-50 Score=274.41 Aligned_cols=84 Identities=30% Similarity=0.524 Sum_probs=81.9
Q ss_pred CCcccCCCCceEEEecCC-CCccCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHcCccEEEeccCCCCCCcccccccCC
Q psy627 1 MQSGTHNANNWFIQFDTR-ERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFS 79 (89)
Q Consensus 1 mQSG~~~t~~W~lefe~~-~~~~dPLMGWtss~D~~~qv~l~F~s~e~Aiayae~~G~~Y~V~~p~~~~~~~ksYadNF~ 79 (89)
||||++++++|+||||+. ++|+|||||||||+||++||+|+|+|+|+||+|||+|||+|+|++|+.+++++|+|||||+
T Consensus 24 mQSG~~~t~~W~lefe~~~~r~~nPLMGWtsS~D~~~qv~L~F~skE~AiayAek~G~~y~V~ep~~~~~r~ksYadNF~ 103 (108)
T 2lju_A 24 MQSGHSKLKAWKLEFEPSCTQYTEPLMNWTGSHDTKQQVCLSFTTRELAIAYAVAHKIDYTVLQDNPRTIVPKSYADNFT 103 (108)
T ss_dssp SSSSCCSCCCEEEEECCCSSCCCCCCCCCSSSCCCCCCSCEEESSHHHHHHHHHHTTCEEEEECSSCCCCCCCCCCCCCC
T ss_pred cccCCCCCCceEEEEecCCCCccCCCccccCCCCccccceEecCCHHHHHHHHHHcCCEEEEecCCcccCCcCchHHHCC
Confidence 899999999999999997 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc
Q psy627 80 WNKRT 84 (89)
Q Consensus 80 ~~r~~ 84 (89)
|+|++
T Consensus 104 ~~r~~ 108 (108)
T 2lju_A 104 KPRDM 108 (108)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 99974
No 2
>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}
Probab=100.00 E-value=9.9e-51 Score=274.56 Aligned_cols=84 Identities=39% Similarity=0.643 Sum_probs=66.1
Q ss_pred CCcccCCCCceEEEecCC-CCccCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHcCccEEEeccCCCCCCcccccccCC
Q psy627 1 MQSGTHNANNWFIQFDTR-ERWENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFS 79 (89)
Q Consensus 1 mQSG~~~t~~W~lefe~~-~~~~dPLMGWtss~D~~~qv~l~F~s~e~Aiayae~~G~~Y~V~~p~~~~~~~ksYadNF~ 79 (89)
||||++++++|+||||+. ++|+|||||||||+||++||+|.|+|+|+||+|||+|||+|+|++|+.+++++|+|||||+
T Consensus 16 mQSG~~~t~~W~lefe~~~~rw~nPLMGWtsS~D~~~qv~L~F~skE~AiayAek~G~~y~V~ep~~~~~r~ksYadNF~ 95 (106)
T 2jya_A 16 MQSGTAKTNVWVLEFDAEVPRKIDPIMGYTSSSDMKQQVKLTFETQEQAEAYAQRKGIEYRVILPKEATRKVVSYTDNFR 95 (106)
T ss_dssp CTTTTCCSCCEEEEEEEECCSCCCTTTCSCSCCCSEEEEEEEESSHHHHHHHHHHHTCEEEECCCTTC------------
T ss_pred cccCCCCCCceEEEEecCCCCccCCCcCcCCCCCccccceEecCCHHHHHHHHHHcCCEEEEeCCCcCcCCcCchHHhCC
Confidence 999999999999999996 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc
Q psy627 80 WNKRT 84 (89)
Q Consensus 80 ~~r~~ 84 (89)
|+|++
T Consensus 96 ~~r~~ 100 (106)
T 2jya_A 96 FNRTQ 100 (106)
T ss_dssp -----
T ss_pred cCCCC
Confidence 99986
No 3
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=88.72 E-value=0.2 Score=36.01 Aligned_cols=21 Identities=14% Similarity=0.539 Sum_probs=19.4
Q ss_pred eeecCCHHHHHHHHHHcCccE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKF 59 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y 59 (89)
.|.|+|.++++.||+++||..
T Consensus 199 ~L~f~s~~e~~~f~~~~gw~i 219 (229)
T 4b0z_A 199 LLYLENTKETEKLAEERGWDI 219 (229)
T ss_dssp HTTCSSHHHHHHHHHHHTCEE
T ss_pred HhCCCCHHHHHHHHHHcCCEE
Confidence 488999999999999999975
No 4
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=86.67 E-value=0.34 Score=36.85 Aligned_cols=22 Identities=18% Similarity=0.557 Sum_probs=20.5
Q ss_pred eeecCCHHHHHHHHHHcCccEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~ 60 (89)
.|.|+|.|+|++||+.+||.+.
T Consensus 233 ~L~Fds~ee~~~F~~~~gl~~~ 254 (316)
T 3t5v_A 233 MLLFNNRQEIIEFCNYYSIEII 254 (316)
T ss_dssp HTTCSSHHHHHHHHHHTTCCEE
T ss_pred HhCCCCHHHHHHHHHHCCCeEe
Confidence 4889999999999999999985
No 5
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.93 E-value=0.44 Score=35.30 Aligned_cols=21 Identities=14% Similarity=0.533 Sum_probs=19.3
Q ss_pred eeecCCHHHHHHHHHHcCccE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKF 59 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y 59 (89)
-|.|+|.+++++||+++||..
T Consensus 208 ~L~F~s~~e~~~F~~~~gW~~ 228 (274)
T 4b4t_T 208 LLFFNNEKETEKFALERNWPI 228 (274)
T ss_dssp HHTCCSHHHHHHHHHHTTCCC
T ss_pred HhCCCCHHHHHHHHHHcCCEE
Confidence 488999999999999999974
No 6
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=78.69 E-value=2.4 Score=27.39 Aligned_cols=38 Identities=8% Similarity=0.223 Sum_probs=28.7
Q ss_pred eeeecCCHHHHHHHHHHcCc-cEEEecc-CCCCCCccccccc
Q psy627 38 LALNFSSKEDAIQYCQKNGW-KFFVEEP-KWKTPKVKSYAFN 77 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~-~Y~V~~p-~~~~~~~ksYadN 77 (89)
|-+..++.++..+|++++|+ +|.+... ..... +.|+-.
T Consensus 83 v~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~--~~~gv~ 122 (171)
T 2yzh_A 83 TVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDM--EKYGVL 122 (171)
T ss_dssp EEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGG--GGGTCB
T ss_pred EEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcH--HHhCCE
Confidence 46788999999999999999 8888665 33333 677643
No 7
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=75.44 E-value=1.3 Score=26.66 Aligned_cols=14 Identities=36% Similarity=1.113 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCccE
Q psy627 46 EDAIQYCQKNGWKF 59 (89)
Q Consensus 46 e~Aiayae~~G~~Y 59 (89)
++-+.||+++||-.
T Consensus 32 ~eV~~YC~~kGwIi 45 (60)
T 1ng7_A 32 QEVRDYCEKKGWIV 45 (60)
T ss_dssp HHHHHHHHHHTCCC
T ss_pred HHHHHHHHHCCcee
Confidence 67799999999974
No 8
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=74.98 E-value=2 Score=30.08 Aligned_cols=49 Identities=20% Similarity=0.444 Sum_probs=31.6
Q ss_pred CceEEEecC-CCCccCCCCC-CCC--------CC---CCCC-ceeeecCCHHHHHHHHHHcCc
Q psy627 9 NNWFIQFDT-RERWENPLMG-WCS--------TG---DPLS-NLALNFSSKEDAIQYCQKNGW 57 (89)
Q Consensus 9 ~~W~lefe~-~~~~~dPLMG-Wts--------s~---D~~~-qv~l~F~s~e~Aiayae~~G~ 57 (89)
..||-+|.. ...|..|--+ |.. .+ -|+. .--+-|.++++|.+|+++||=
T Consensus 70 aiyV~D~~t~~~~w~~p~~~~wIdA~~A~YVvgS~~~gpMG~~~l~pFa~k~dAe~Fa~~~GG 132 (175)
T 2hpu_A 70 VIYVNDMGAAGATWDQPGDGNWIAADKAFYVVGSARRGGMGAPEAVPFSSRDEAAAFVLAEGG 132 (175)
T ss_dssp EEEEEESCTTSSCTTCSCCCEEECGGGSEEEEESSSSCSSSCCCEEEESCHHHHHHHHHHTEE
T ss_pred EEEEEcCcccccccccCCCCceEECCeeEEEeCCCCCCCCCCCcccCcCCHHHHHHHHHHcCC
Confidence 458888876 2445444221 321 12 2344 457899999999999999985
No 9
>3jtn_A YPBH, adapter protein MECA 2; adaptor protein, competence, sporulation, protein binding; 2.09A {Bacillus subtilis} PDB: 3jto_A
Probab=72.40 E-value=2.8 Score=25.96 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=17.0
Q ss_pred ceeeecCCHHHHHHHHHHc
Q psy627 37 NLALNFSSKEDAIQYCQKN 55 (89)
Q Consensus 37 qv~l~F~s~e~Aiayae~~ 55 (89)
.+-+.|++.|+.|++|+..
T Consensus 2 ~~i~~F~~~edvI~~a~~l 20 (91)
T 3jtn_A 2 DIIYQFHSFEDIIQLSESL 20 (91)
T ss_dssp CEEEEESSHHHHHHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHc
Confidence 4678999999999999975
No 10
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=70.17 E-value=3.3 Score=25.99 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=15.6
Q ss_pred CceeeecCCHHHHHHHHH
Q psy627 36 SNLALNFSSKEDAIQYCQ 53 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiayae 53 (89)
.-|-+.|+|.|+|.++..
T Consensus 55 ~~viieFpS~~aa~~~~~ 72 (99)
T 2fiu_A 55 RNVVIEFPSVQHAIDCYN 72 (99)
T ss_dssp EEEEEEESSHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHc
Confidence 567899999999999864
No 11
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Probab=70.07 E-value=3.4 Score=25.98 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=18.2
Q ss_pred CceeeecCCHHHHHHHHHHcCc
Q psy627 36 SNLALNFSSKEDAIQYCQKNGW 57 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiayae~~G~ 57 (89)
.++.+.|++.|+.|++|+ .+.
T Consensus 7 ~~~i~~F~d~edvI~~a~-~~~ 27 (98)
T 3jtp_A 7 LQFVLRFGDFEDVISLSK-LNV 27 (98)
T ss_dssp CEEEEEESSHHHHHHHHH-TTC
T ss_pred cEEEEEcCCHHHHHHHhC-CCC
Confidence 467899999999999999 654
No 12
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=69.68 E-value=3.7 Score=25.55 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=17.2
Q ss_pred CCCCceeeecCCHHHHHHHHH
Q psy627 33 DPLSNLALNFSSKEDAIQYCQ 53 (89)
Q Consensus 33 D~~~qv~l~F~s~e~Aiayae 53 (89)
++-.-|-+.|+|.|+|.++..
T Consensus 51 ~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 51 EHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp CCSEEEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEECCCHHHHHHHHC
Confidence 355668999999999999854
No 13
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=64.57 E-value=5.5 Score=25.77 Aligned_cols=21 Identities=38% Similarity=0.422 Sum_probs=17.9
Q ss_pred CCceeeecCCHHHHHHHHHHc
Q psy627 35 LSNLALNFSSKEDAIQYCQKN 55 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~~ 55 (89)
.....|.|.|.+||-+|++..
T Consensus 84 ~~~~GLnF~se~eA~~F~~~v 104 (112)
T 1evh_A 84 RQVYGLNFGSKEDANVFASAM 104 (112)
T ss_dssp SCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEecCCHHHHHHHHHHH
Confidence 367899999999999998753
No 14
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=64.50 E-value=5.6 Score=26.22 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.8
Q ss_pred CCceeeecCCHHHHHHHHHHcC
Q psy627 35 LSNLALNFSSKEDAIQYCQKNG 56 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~~G 56 (89)
...+.|.|.|.|||-+|.+..-
T Consensus 85 ~~~~GL~F~se~eA~~F~~~~~ 106 (130)
T 1qc6_A 85 RQVYGLNFASKEEATTFSNAML 106 (130)
T ss_dssp SCEEEEEESCHHHHHHHHHHHH
T ss_pred CEEEEEecCCHHHHHHHHHHHH
Confidence 3678999999999999988654
No 15
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=64.27 E-value=5.7 Score=25.87 Aligned_cols=21 Identities=43% Similarity=0.491 Sum_probs=17.9
Q ss_pred CCceeeecCCHHHHHHHHHHc
Q psy627 35 LSNLALNFSSKEDAIQYCQKN 55 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~~ 55 (89)
.....|.|.|.+||-+|++..
T Consensus 86 ~~~~GLnF~se~eA~~F~~~v 106 (115)
T 1egx_A 86 RQVWGLNFGSKEDAAQFAAGM 106 (115)
T ss_dssp SCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEecCCHHHHHHHHHHH
Confidence 367799999999999998763
No 16
>3pxi_a Adapter protein MECA 1; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=64.11 E-value=3.6 Score=26.65 Aligned_cols=24 Identities=21% Similarity=0.265 Sum_probs=19.5
Q ss_pred CCCCceeeecCCHHHHHHHHHHcCc
Q psy627 33 DPLSNLALNFSSKEDAIQYCQKNGW 57 (89)
Q Consensus 33 D~~~qv~l~F~s~e~Aiayae~~G~ 57 (89)
+...++.+.|++.|+.|++|+ .+.
T Consensus 17 ~~~~~~i~~F~dfEdvI~~A~-~~~ 40 (111)
T 3pxi_a 17 EQKLQFVLRFGDFEDVISLSK-LNV 40 (111)
T ss_dssp -CCCEEEEEESSTHHHHHHHT-SCC
T ss_pred ccccEEEEEcCCHHHHHHHHc-CCC
Confidence 445678999999999999999 654
No 17
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=63.98 E-value=5.7 Score=26.44 Aligned_cols=20 Identities=25% Similarity=0.351 Sum_probs=17.7
Q ss_pred CceeeecCCHHHHHHHHHHc
Q psy627 36 SNLALNFSSKEDAIQYCQKN 55 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiayae~~ 55 (89)
..+.|.|.|.+||-+|++..
T Consensus 98 ~~~GLnF~se~eA~~F~~~v 117 (126)
T 2jp2_A 98 RKFGLTFQSPADARAFDRGV 117 (126)
T ss_dssp SEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEecCCHHHHHHHHHHH
Confidence 66899999999999998764
No 18
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=61.70 E-value=4.6 Score=23.09 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=15.0
Q ss_pred ceeeecCCHHHHHHHHHH
Q psy627 37 NLALNFSSKEDAIQYCQK 54 (89)
Q Consensus 37 qv~l~F~s~e~Aiayae~ 54 (89)
.+.-.|.|++||.+|.+.
T Consensus 33 a~yK~F~t~~eA~~~l~~ 50 (53)
T 3bsu_A 33 ARFKKFATEDEAWAFVRK 50 (53)
T ss_dssp CEEEEESSHHHHHHHHHC
T ss_pred CccCCCCCHHHHHHHHHh
Confidence 356789999999999864
No 19
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=59.83 E-value=4.8 Score=27.45 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=20.1
Q ss_pred eeeecCCHHHHHHHHHHcCccE
Q psy627 38 LALNFSSKEDAIQYCQKNGWKF 59 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y 59 (89)
|+|+|+|+.+|.+-+.+||--+
T Consensus 65 ikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 65 TKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp EEEEBSSHHHHHHHHTTTTCEE
T ss_pred EEEEcCCHHHHHHHHHhCCeEe
Confidence 7999999999999999999654
No 20
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=59.06 E-value=5.2 Score=22.30 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=13.0
Q ss_pred eeeecCCHHHHHHHH
Q psy627 38 LALNFSSKEDAIQYC 52 (89)
Q Consensus 38 v~l~F~s~e~Aiaya 52 (89)
+.-+|.|++||.+|.
T Consensus 32 ~yK~F~t~~eA~~~l 46 (47)
T 1qhk_A 32 IYKKFNSYEQAKSFL 46 (47)
T ss_dssp CCEEESCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHh
Confidence 467899999999985
No 21
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=57.73 E-value=5.4 Score=27.07 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=27.7
Q ss_pred CCceEEEecCCC--Cc---cCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHc
Q psy627 8 ANNWFIQFDTRE--RW---ENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKN 55 (89)
Q Consensus 8 t~~W~lefe~~~--~~---~dPLMGWtss~D~~~qv~l~F~s~e~Aiayae~~ 55 (89)
.+.++|+..-.. .+ ...+--|.- ..+.-.|.|.|+|||-+|++..
T Consensus 66 d~~vvinc~I~~~l~Ynkatp~FHqWrd---~~~~yGL~F~S~~dA~~F~~~~ 115 (130)
T 3syx_A 66 DKMVVLECMLKKDLIYNKVTPTFHHWKI---DDKKFGLTFQSPADARAFDRGI 115 (130)
T ss_dssp TCCEEEEEECCTTCEEEEEETTEEEEEE---TTEEEEEEESSHHHHHHHHHHH
T ss_pred CCeEEEeeeecCCceEEecccccccccc---cCeEeecccCCHHHHHHHHHHH
Confidence 455677664431 11 133445553 3344589999999999999853
No 22
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=57.63 E-value=10 Score=24.32 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=23.5
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
+.++.++.++..+|++++|++|.|...
T Consensus 68 v~vs~d~~~~~~~~~~~~~~~~p~l~D 94 (157)
T 4g2e_A 68 LGISVDPPFSNKAFKEHNKLNFTILSD 94 (157)
T ss_dssp EEEESSCHHHHHHHHHHTTCCSEEEEC
T ss_pred eeecccchhHHHHHHHHcCCcEEEEEc
Confidence 467889999999999999999988653
No 23
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=57.27 E-value=24 Score=20.46 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=24.8
Q ss_pred CceeeecCCHHHHHHHHHHcCccEEEec
Q psy627 36 SNLALNFSSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiayae~~G~~Y~V~~ 63 (89)
..|.+.....++-.++-+++|+.|+|.-
T Consensus 49 vdI~V~p~~~~~f~~~L~~~~I~y~Vli 76 (78)
T 2gjf_A 49 VVILIPSDMVEWFLEMLKAKGIPFTVYV 76 (78)
T ss_dssp EEEEECTTSHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEECHHHHHHHHHHHHHCCCcEEEEe
Confidence 4578999999999999999999999963
No 24
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=56.36 E-value=4.6 Score=31.50 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=23.4
Q ss_pred ecCCHHHHHHHHHHcCccEEEeccCCCCCCcccccccCC
Q psy627 41 NFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYAFNFS 79 (89)
Q Consensus 41 ~F~s~e~Aiayae~~G~~Y~V~~p~~~~~~~ksYadNF~ 79 (89)
.|.++++-++||+++|+++.+. |. .+-|+..||.
T Consensus 154 ~~~sK~EI~~yA~~~Gip~~~~-~~----~~~S~d~n~~ 187 (413)
T 2nz2_A 154 RFKGRNDLMEYAKQHGIPIPVT-PK----NPWSMDENLM 187 (413)
T ss_dssp TCC-CHHHHHHHHHTTCCCCSS-CC----CSSCEEECSS
T ss_pred cCCCHHHHHHHHHHcCCCeecC-CC----CCCCCChhhh
Confidence 4669999999999999998632 22 2346666663
No 25
>4fle_A Esterase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein, rossmann fold, HY; 2.10A {Yersinia enterocolitica subsp}
Probab=55.91 E-value=8.4 Score=24.63 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=22.6
Q ss_pred CCCCCCCCCCCCceeeecCCHHHH-HHHHHHcCccEEEeccCC
Q psy627 25 LMGWCSTGDPLSNLALNFSSKEDA-IQYCQKNGWKFFVEEPKW 66 (89)
Q Consensus 25 LMGWtss~D~~~qv~l~F~s~e~A-iayae~~G~~Y~V~~p~~ 66 (89)
|-||.||.+. .+-.+ .+||+++|..|.|..|.-
T Consensus 8 lHGf~ss~~s---------~k~~~l~~~~~~~~~~~~v~~pdl 41 (202)
T 4fle_A 8 IHGFNSSPSS---------AKATTFKSWLQQHHPHIEMQIPQL 41 (202)
T ss_dssp ECCTTCCTTC---------HHHHHHHHHHHHHCTTSEEECCCC
T ss_pred eCCCCCCCCc---------cHHHHHHHHHHHcCCCcEEEEeCC
Confidence 5699887652 12222 368899999999988754
No 26
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=55.65 E-value=6.6 Score=25.69 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=17.8
Q ss_pred CCceeeecCCHHHHHHHHHHc
Q psy627 35 LSNLALNFSSKEDAIQYCQKN 55 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~~ 55 (89)
.....|.|.|.+||-+|+++.
T Consensus 88 ~~~~GL~F~se~eA~~F~~~v 108 (118)
T 1xod_A 88 DKKFGLTFQSPADARAFDRGI 108 (118)
T ss_dssp TEEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEecCCHHHHHHHHHHH
Confidence 345789999999999998864
No 27
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=55.11 E-value=5.8 Score=24.92 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=13.2
Q ss_pred ecCCHHHHHHHHHHc
Q psy627 41 NFSSKEDAIQYCQKN 55 (89)
Q Consensus 41 ~F~s~e~Aiayae~~ 55 (89)
.|+|.++||+.|+.+
T Consensus 111 i~~s~~~Al~~~~~~ 125 (130)
T 4dgh_A 111 VYPVFEGALSAALTE 125 (130)
T ss_dssp EESSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH
Confidence 589999999999864
No 28
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=54.85 E-value=15 Score=21.44 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=24.7
Q ss_pred CceeeecCCHHHHHHHHHHcCccEEEec
Q psy627 36 SNLALNFSSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiayae~~G~~Y~V~~ 63 (89)
..|.+.....++-.++-+++|+.|+|.-
T Consensus 41 ~di~V~p~~~~~f~~~L~~~~i~~~v~i 68 (79)
T 1vjq_A 41 VVILIPSDMVEWFLEMLKAKGIPFTVYV 68 (79)
T ss_dssp EEEEECGGGHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECHHHHHHHHHHHHHCCCcEEEEe
Confidence 3578889999999999999999999964
No 29
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=54.37 E-value=13 Score=23.52 Aligned_cols=27 Identities=7% Similarity=0.161 Sum_probs=23.9
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
|.+..++.++..+|++++|++|.+...
T Consensus 67 v~vs~d~~~~~~~~~~~~~~~~~~~~d 93 (161)
T 3drn_A 67 IGVSSDDINSHKRFKEKYKLPFILVSD 93 (161)
T ss_dssp EEEESCCHHHHHHHHHHTTCCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHhCCCceEEEC
Confidence 467889999999999999999988764
No 30
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=54.02 E-value=7.5 Score=25.59 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.4
Q ss_pred CceeeecCCHHHHHHHHHHc
Q psy627 36 SNLALNFSSKEDAIQYCQKN 55 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiayae~~ 55 (89)
....|.|.|+|||-+|++..
T Consensus 84 ~~~GLnF~s~~eA~~F~~~~ 103 (120)
T 1ddw_A 84 TVYGLGFSSEHHLSKFAEKF 103 (120)
T ss_dssp EEEEEECSSHHHHHHHHHHH
T ss_pred EEEEeccCCHHHHHHHHHHH
Confidence 66789999999999998753
No 31
>2hw0_A Replicase; alpha+beta, hydrolase, replication; NMR {Porcine circovirus 2}
Probab=53.99 E-value=15 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=17.1
Q ss_pred CCHHHHHHHHHHcCcc-EEEeccC
Q psy627 43 SSKEDAIQYCQKNGWK-FFVEEPK 65 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~-Y~V~~p~ 65 (89)
.|.++|++||.|.|-- ++.-+|.
T Consensus 87 gs~~q~~~Yc~Keg~~i~e~G~~~ 110 (115)
T 2hw0_A 87 GTDQQNKEYCSKEGNLLMECGAPR 110 (115)
T ss_dssp SCHHHHHHHHHTTSCEEEEEECCC
T ss_pred CCHHHHHHHhccCCcEEEEecccc
Confidence 3789999999999943 3555554
No 32
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=51.66 E-value=14 Score=23.23 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=23.7
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
|-+..++.++..+|++++|++|.+...
T Consensus 72 v~is~d~~~~~~~~~~~~~~~~~~l~D 98 (159)
T 2a4v_A 72 FGLSADSVTSQKKFQSKQNLPYHLLSD 98 (159)
T ss_dssp EEEESCCHHHHHHHHHHHTCSSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHhCCCceEEEC
Confidence 568889999999999999999988664
No 33
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=51.26 E-value=17 Score=23.24 Aligned_cols=27 Identities=4% Similarity=-0.093 Sum_probs=23.3
Q ss_pred eeeecCCHHHHHHHHHHcCc--cEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGW--KFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~--~Y~V~~p 64 (89)
|.++.++.++.-+|++++|+ +|.+...
T Consensus 75 v~Is~d~~~~~~~~~~~~~~~~~~~~l~D 103 (162)
T 1tp9_A 75 LCISVNDPFVMKAWAKSYPENKHVKFLAD 103 (162)
T ss_dssp EEEESSCHHHHHHHHHTCTTCSSEEEEEC
T ss_pred EEEECCCHHHHHHHHHhcCCCCCeEEEEC
Confidence 46788999999999999999 8988654
No 34
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=50.68 E-value=11 Score=23.41 Aligned_cols=27 Identities=15% Similarity=0.299 Sum_probs=23.6
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
|.+..++.+++.+|++++|+.|.+...
T Consensus 74 v~is~d~~~~~~~~~~~~~~~~~~~~d 100 (160)
T 1xvw_A 74 LAISVGPPPTHKIWATQSGFTFPLLSD 100 (160)
T ss_dssp EEEESCCHHHHHHHHHHHTCCSCEEEC
T ss_pred EEEeCCCHHHHHHHHHhcCCCceEEec
Confidence 567889999999999999999987654
No 35
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=50.43 E-value=11 Score=23.57 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=23.4
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
|-+..++.++..+|++++|+.|.+...
T Consensus 73 v~vs~d~~~~~~~~~~~~~~~~~~~~d 99 (163)
T 3gkn_A 73 LGVSRDSVKSHDNFCAKQGFAFPLVSD 99 (163)
T ss_dssp EEEESSCHHHHHHHHHHHCCSSCEEEC
T ss_pred EEEeCCCHHHHHHHHHHhCCCceEEEC
Confidence 467889999999999999999988753
No 36
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=50.05 E-value=15 Score=23.36 Aligned_cols=27 Identities=11% Similarity=0.255 Sum_probs=23.0
Q ss_pred eeeecCCHHHHHHHHHHcCc-cEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGW-KFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~-~Y~V~~p 64 (89)
|-+..++.++..+|++++|+ .|.+...
T Consensus 78 v~is~d~~~~~~~~~~~~~~~~~~~l~D 105 (163)
T 1psq_A 78 LTVSMDLPFAQKRWCGAEGLDNAIMLSD 105 (163)
T ss_dssp EEEESSCHHHHHHHHHHHTCTTSEEEEC
T ss_pred EEEECCCHHHHHHHHHhcCCCCcEEecC
Confidence 46788999999999999999 8887654
No 37
>1tif_A IF3-N, translation initiation factor 3; IF3 N-terminal domain, ribosome binding factor; 1.80A {Geobacillus stearothermophilus} SCOP: d.15.8.1
Probab=49.75 E-value=11 Score=23.44 Aligned_cols=33 Identities=18% Similarity=0.403 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHcCccEEEeccCCCC--CCccccc
Q psy627 43 SSKEDAIQYCQKNGWKFFVEEPKWKT--PKVKSYA 75 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~p~~~~--~~~ksYa 75 (89)
-+..+|++-|++.|++.....|.... -+.-.||
T Consensus 29 ~~~~eAl~~A~e~~LDLVevsp~a~PPVCkImDyg 63 (78)
T 1tif_A 29 KSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDYG 63 (78)
T ss_dssp EEHHHHHHHHHHTTCEEEEEETTSSSCEEEEECHH
T ss_pred ccHHHHHHHHHHcCCCEEEECCCCCCCEEEEecch
Confidence 47889999999999999888876432 2444554
No 38
>1snn_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, isomerase; HET: 5RP; 1.55A {Methanocaldococcus jannaschii} SCOP: d.115.1.2 PDB: 1pvy_A* 1pvw_A
Probab=49.74 E-value=9.9 Score=27.95 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHcCccEEEec
Q psy627 43 SSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~ 63 (89)
..++++++||++||+++.-.+
T Consensus 194 ar~~~l~~fA~~h~l~~iti~ 214 (227)
T 1snn_A 194 MSKNETKRYAEKHNLIYLSGE 214 (227)
T ss_dssp CCHHHHHHHHHHHTCCEEEHH
T ss_pred CCHHHHHHHHHHcCCcEEEHH
Confidence 578999999999999986544
No 39
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=49.72 E-value=16 Score=23.72 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=23.6
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
+.++-++.++.-+|++++|++|.|...
T Consensus 71 v~is~d~~~~~~~~~~~~~~~fp~l~D 97 (164)
T 4gqc_A 71 LAISVDSPWCLKKFKDENRLAFNLLSD 97 (164)
T ss_dssp EEEESSCHHHHHHHHHHTTCCSEEEEC
T ss_pred EEecCCCHHHHHHHHHhcCcccceeec
Confidence 467889999999999999999988653
No 40
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=48.63 E-value=6.4 Score=24.70 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=13.5
Q ss_pred ecCCHHHHHHHHHHc
Q psy627 41 NFSSKEDAIQYCQKN 55 (89)
Q Consensus 41 ~F~s~e~Aiayae~~ 55 (89)
.|+|.++|++.|++.
T Consensus 110 i~~t~~~Al~~~~~~ 124 (130)
T 2kln_A 110 IFMTLPTAVQAFRRR 124 (130)
T ss_dssp EESCHHHHHHHHTTC
T ss_pred eECCHHHHHHHHHhh
Confidence 689999999999985
No 41
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=47.86 E-value=18 Score=23.70 Aligned_cols=27 Identities=4% Similarity=-0.054 Sum_probs=23.1
Q ss_pred eeeecCCHHHHHHHHHHcCcc--EEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGWK--FFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~--Y~V~~p 64 (89)
|.+..++.+++.+|++++|++ |.+...
T Consensus 71 v~Is~d~~~~~~~~~~~~~~~~~fp~l~D 99 (167)
T 2wfc_A 71 ACMAVNDSFVMDAWGKAHGADDKVQMLAD 99 (167)
T ss_dssp EEEESSCHHHHHHHHHHTTCTTTSEEEEC
T ss_pred EEEeCCCHHHHHHHHHhcCCCcceEEEEC
Confidence 467889999999999999999 887654
No 42
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=47.45 E-value=6.3 Score=28.40 Aligned_cols=41 Identities=17% Similarity=0.125 Sum_probs=28.2
Q ss_pred eecCCHHHHHHHHHHcCccEE-----EeccCCCCCCcccccccCCc
Q psy627 40 LNFSSKEDAIQYCQKNGWKFF-----VEEPKWKTPKVKSYAFNFSW 80 (89)
Q Consensus 40 l~F~s~e~Aiayae~~G~~Y~-----V~~p~~~~~~~ksYadNF~~ 80 (89)
|-|.|.++...||++.||..+ +...++...++|...++-.+
T Consensus 162 Lg~~s~~el~~fi~~~GW~vd~~g~I~~~n~e~~~k~~~~~E~i~~ 207 (226)
T 1rz4_A 162 LGDLSDSQLKVWMSKYGWSADESGQIFICSQEESIKPKNIVEKIDF 207 (226)
T ss_dssp TTSCCHHHHHHHHHHHTCEECC--CEECCCHHHHTSCCCSSCCCCH
T ss_pred HcCCCHHHHHHHHHHCCCEECCCccEEeCCCcccccceeeeecccH
Confidence 336789999999999999863 22234445566777666544
No 43
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=47.33 E-value=11 Score=18.78 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHcCc.
Q psy627 44 SKEDAIQYCQKNGW. 57 (89)
Q Consensus 44 s~e~Aiayae~~G~. 57 (89)
+..+...|+++||+
T Consensus 12 ~~~~Vk~fvR~~gi. 25 (25)
T 3ewt_E 12 TLSQVKGFVRKNGVx 26 (26)
T ss_pred hHHHHHHHHHHcCC.
Confidence 35688999999986
No 44
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=47.05 E-value=9.1 Score=29.58 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHcCccEEE
Q psy627 42 FSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 42 F~s~e~Aiayae~~G~~Y~V 61 (89)
|.++++-++||+++|+++.+
T Consensus 147 ~~tK~eI~~ya~~~gip~~~ 166 (400)
T 1kor_A 147 FQGRKEMIAYAEAHGIPVPV 166 (400)
T ss_dssp CCSHHHHHHHHHHTTCCCC-
T ss_pred cCCHHHHHHHHHHcCCCccc
Confidence 45999999999999999875
No 45
>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan degradation, hydrolase; HET: XYP; 1.90A {Clostridium thermocellum} PDB: 2wze_A* 2wys_A*
Probab=46.37 E-value=12 Score=29.72 Aligned_cols=23 Identities=9% Similarity=0.395 Sum_probs=20.7
Q ss_pred eeeecCCHHHHHHHHHHcCccEE
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~ 60 (89)
+++.|...+..|+||++||+...
T Consensus 241 ~~~~f~~aD~~v~~A~~ngi~vr 263 (540)
T 2w5f_A 241 IRVSLNRAASILNFCAQNNIAVR 263 (540)
T ss_dssp EEECCTTTHHHHHHHHHTTCEEE
T ss_pred ceechhHHHHHHHHHHHCCCEEE
Confidence 46899999999999999999973
No 46
>4dgf_A Sulfate transporter sulfate transporter family PR; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.60A {Wolinella succinogenes} PDB: 3oir_A*
Probab=45.65 E-value=10 Score=24.01 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=13.2
Q ss_pred ecCCHHHHHHHHHHc
Q psy627 41 NFSSKEDAIQYCQKN 55 (89)
Q Consensus 41 ~F~s~e~Aiayae~~ 55 (89)
.|+|.++||+.|+.+
T Consensus 114 i~~t~~~Al~~~~~~ 128 (135)
T 4dgf_A 114 VFDHIDKALAYAKLL 128 (135)
T ss_dssp BCSSHHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHH
Confidence 589999999999864
No 47
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=45.39 E-value=17 Score=22.42 Aligned_cols=26 Identities=0% Similarity=0.165 Sum_probs=23.0
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEec
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~ 63 (89)
+.+..++.++..+|++++|+.|.+..
T Consensus 61 v~v~~d~~~~~~~~~~~~~~~~~~~~ 86 (151)
T 3raz_A 61 VGIALDTSDNIGNFLKQTPVSYPIWR 86 (151)
T ss_dssp EEEESSCHHHHHHHHHHSCCSSCEEE
T ss_pred EEEECCChHHHHHHHHHcCCCCceEe
Confidence 56888999999999999999997764
No 48
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=43.81 E-value=23 Score=22.52 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=23.7
Q ss_pred eeeecCCHHHHHHHHHHcCc-cEEEeccC
Q psy627 38 LALNFSSKEDAIQYCQKNGW-KFFVEEPK 65 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~-~Y~V~~p~ 65 (89)
|-+..++.++..+||+++|+ .|.+....
T Consensus 81 v~is~d~~~~~~~~~~~~~~~~~~~l~D~ 109 (166)
T 3p7x_A 81 LTISADLPFAQKRWCASAGLDNVITLSDH 109 (166)
T ss_dssp EEEESSCHHHHHHHHHHHTCSSCEEEECT
T ss_pred EEEECCCHHHHHHHHHHcCCCceEEccCC
Confidence 46788999999999999999 89886643
No 49
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=41.94 E-value=17 Score=25.41 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=17.8
Q ss_pred CCceeeecCCHHHHHHHHHHc
Q psy627 35 LSNLALNFSSKEDAIQYCQKN 55 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~~ 55 (89)
.....|.|.|.|||-+|++..
T Consensus 88 ~~v~GLnF~Se~eA~~F~~~~ 108 (168)
T 1i2h_A 88 NTVYGLGFSSEHHLSKFAEKF 108 (168)
T ss_dssp TEEEEEEESSHHHHHHHHHHH
T ss_pred cEEEEeccCCHHHHHHHHHHH
Confidence 366789999999999998754
No 50
>1mwq_A Hypothetical protein HI0828; YCII_HAEIN, structural genomic structure 2 function project, S2F, unknown function; HET: MSE 1PE; 0.99A {Haemophilus influenzae} SCOP: d.58.4.7
Probab=41.90 E-value=17 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=19.9
Q ss_pred eeeecCCHHHHHHHHHH-----cCc--cEEEec
Q psy627 38 LALNFSSKEDAIQYCQK-----NGW--KFFVEE 63 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-----~G~--~Y~V~~ 63 (89)
+-+.++|+|+|+++|++ +|+ .|+|.+
T Consensus 64 ~i~~a~s~eea~~~~~~dP~~~~G~~~~~eVrp 96 (101)
T 1mwq_A 64 VIAQFENLQAAKDWAAQDPYVEAGVYADVIVKP 96 (101)
T ss_dssp EEEECSSHHHHHHHHHTCHHHHTTCEEEEEEEE
T ss_pred EEEEeCCHHHHHHHHHhCChhhcCCcceEEEEE
Confidence 46899999999999975 354 466653
No 51
>2p6w_A VP54, putative glycosyltransferase (mannosyltransferase in glycosylating the PBCV-1 major...; HET: FLC; 1.60A {Paramecium bursaria chlorella virus 1} PDB: 2p72_A* 2p73_A*
Probab=41.24 E-value=14 Score=27.15 Aligned_cols=20 Identities=40% Similarity=0.861 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHcCccEEEec
Q psy627 44 SKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~ 63 (89)
|.+-=++||++||++..+..
T Consensus 25 siKNK~DYArrHGYelfy~d 44 (213)
T 2p6w_A 25 TKELVEEYCSIHGYNFYYEE 44 (213)
T ss_dssp HHHHHHHHHHHHTCEEEEEC
T ss_pred HHHHHHHHHHHcCCeEEEee
Confidence 45556789999999999864
No 52
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=40.79 E-value=18 Score=25.81 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=27.9
Q ss_pred eeeecCCHHHHHHHHHHcCc-cEEEeccCCCCCCcccccc
Q psy627 38 LALNFSSKEDAIQYCQKNGW-KFFVEEPKWKTPKVKSYAF 76 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~-~Y~V~~p~~~~~~~ksYad 76 (89)
|.++.++.++.-+||+++|+ .|.+.........-+.||=
T Consensus 86 vgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~vak~yGv 125 (224)
T 3keb_A 86 IVITVDSPSSLARARHEHGLPNIALLSTLRGRDFHKRYGV 125 (224)
T ss_dssp EEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHHHHTTC
T ss_pred EEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHHHHhCC
Confidence 46888999999999999999 6888765321223345543
No 53
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=40.35 E-value=20 Score=23.38 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=23.5
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
|-+..++.++..+|++++|++|.+...
T Consensus 89 v~Vs~D~~~~~~~~~~~~~~~f~~l~D 115 (179)
T 3ixr_A 89 LGVSRDSVKSHDSFCAKQGFTFPLVSD 115 (179)
T ss_dssp EEEESCCHHHHHHHHHHHTCCSCEEEC
T ss_pred EEEcCCCHHHHHHHHHHcCCceEEEEC
Confidence 467889999999999999999988763
No 54
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=40.29 E-value=13 Score=27.49 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=27.7
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEeccCCCCCCccccc
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYA 75 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~p~~~~~~~ksYa 75 (89)
|.++-++.++..+||+++|++|.|..... ...-+.||
T Consensus 58 ~gis~D~~~~~~~f~~~~~l~fp~l~D~~-~~v~~~yg 94 (322)
T 4eo3_A 58 VGISRDSVEALKRFKEKNDLKVTLLSDPE-GILHEFFN 94 (322)
T ss_dssp EEEESCCHHHHHHHHHHHTCCSEEEECTT-CHHHHHTT
T ss_pred EEEeCCCHHHHHHHHHhhCCceEEEEcCc-hHHHHhcC
Confidence 46788999999999999999999876532 22334454
No 55
>3mio_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin, ribulose-5-phosphate, FAD, FMN; 1.80A {Mycobacterium tuberculosis} SCOP: d.115.1.0 PDB: 3mgz_A 3mk5_A
Probab=40.25 E-value=17 Score=26.34 Aligned_cols=21 Identities=5% Similarity=0.281 Sum_probs=17.4
Q ss_pred cCCHHHHHHHHHHcCccEEEe
Q psy627 42 FSSKEDAIQYCQKNGWKFFVE 62 (89)
Q Consensus 42 F~s~e~Aiayae~~G~~Y~V~ 62 (89)
-..++++++||++||+++.-.
T Consensus 175 mar~~~l~~fA~~h~l~~iti 195 (206)
T 3mio_A 175 MAHTDELRVFADEHGLALITI 195 (206)
T ss_dssp BCCHHHHHHHHHHHTCEEEEH
T ss_pred cCCHHHHHHHHHHcCCcEEEH
Confidence 356899999999999997543
No 56
>3llo_A Prestin; STAS domain, cell shape, glycoprotein, membrane, motor prote transmembrane; HET: BOG; 1.57A {Rattus norvegicus}
Probab=39.66 E-value=7 Score=24.80 Aligned_cols=16 Identities=38% Similarity=0.299 Sum_probs=13.3
Q ss_pred eecCCHHHHHHHHHHc
Q psy627 40 LNFSSKEDAIQYCQKN 55 (89)
Q Consensus 40 l~F~s~e~Aiayae~~ 55 (89)
-.|+|.++||++|+.+
T Consensus 126 ~if~s~~~Al~~~~~~ 141 (143)
T 3llo_A 126 LLFHSIHDAVLGSQVR 141 (143)
T ss_dssp GEESSHHHHHHHTSSC
T ss_pred eEECcHHHHHHHHHhc
Confidence 3689999999998754
No 57
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Probab=38.58 E-value=16 Score=31.05 Aligned_cols=23 Identities=13% Similarity=0.275 Sum_probs=20.0
Q ss_pred eecCCHHHHHHHHHHcCccEEEe
Q psy627 40 LNFSSKEDAIQYCQKNGWKFFVE 62 (89)
Q Consensus 40 l~F~s~e~Aiayae~~G~~Y~V~ 62 (89)
+..++-..=|+||.+|||+|.++
T Consensus 368 ~nte~~K~YIDFAA~~G~eyvLv 390 (738)
T 2d73_A 368 ANTANVKRYIDFAAAHGFDAVLV 390 (738)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE
Confidence 46667778899999999999998
No 58
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.41 E-value=30 Score=20.13 Aligned_cols=24 Identities=13% Similarity=0.385 Sum_probs=20.1
Q ss_pred ecCCHHHHHHHHHHcCccEEEecc
Q psy627 41 NFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 41 ~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
.+.+.+++.+++++.|+++.|-..
T Consensus 30 ~~~~~~~~~~~~~~~~~P~vvKp~ 53 (108)
T 2cqy_A 30 VVKDAEEAVRIAREIGYPVMIKAS 53 (108)
T ss_dssp CBSSHHHHHHHHHHHCSSEEEEET
T ss_pred ccCCHHHHHHHHHhcCCCEEEEEC
Confidence 567899999999999999877554
No 59
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=37.16 E-value=19 Score=24.14 Aligned_cols=19 Identities=5% Similarity=-0.060 Sum_probs=15.7
Q ss_pred CCCceeeecCCHHHHHHHH
Q psy627 34 PLSNLALNFSSKEDAIQYC 52 (89)
Q Consensus 34 ~~~qv~l~F~s~e~Aiaya 52 (89)
+-.-|-+.|+|.++|+++.
T Consensus 87 ~~~~viieFPS~~aa~a~y 105 (143)
T 3hhl_A 87 WDHVFIAEYPSVAAFVEMI 105 (143)
T ss_dssp CSEEEEEEESCHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHH
Confidence 3456899999999999874
No 60
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=36.69 E-value=11 Score=20.25 Aligned_cols=19 Identities=5% Similarity=0.139 Sum_probs=16.6
Q ss_pred eeecCCHHHHHHHHHHcCc
Q psy627 39 ALNFSSKEDAIQYCQKNGW 57 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~ 57 (89)
+|...+..+++++|.++|+
T Consensus 40 kl~~~~~~~l~~~~~~~g~ 58 (61)
T 2jpc_A 40 KLQVHKVTELLNCARRMRL 58 (61)
T ss_dssp HHTCSSHHHHHHHHHCSCC
T ss_pred HHCCCCHHHHHHHHHHcCC
Confidence 4677899999999999987
No 61
>3tbi_A RNA polymerase-associated protein GP33; transcription accessory protein, transcription; 3.00A {Enterobacteria phage T4}
Probab=35.94 E-value=15 Score=24.64 Aligned_cols=15 Identities=13% Similarity=0.122 Sum_probs=13.5
Q ss_pred HHHHHHHHHHcCccE
Q psy627 45 KEDAIQYCQKNGWKF 59 (89)
Q Consensus 45 ~e~Aiayae~~G~~Y 59 (89)
.|+++.|||.++|++
T Consensus 59 LEA~~~w~EEnsIe~ 73 (115)
T 3tbi_A 59 LEATTAFLEENSIPE 73 (115)
T ss_dssp HHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHcCCCH
Confidence 689999999999985
No 62
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=35.72 E-value=26 Score=23.65 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=21.3
Q ss_pred ceeeecCCHHHHHHHHHHcCccEEE
Q psy627 37 NLALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 37 qv~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
++.+.+.+.+++++.|.+.|++.++
T Consensus 4 ~~~~p~~~l~~~l~~~~~~G~~vEl 28 (254)
T 3ayv_A 4 RLAFPLSRAEEALPRLQALGLGAEV 28 (254)
T ss_dssp EEEEEGGGHHHHHHHHHHHTCEEEE
T ss_pred cccCCHHHHHHHHHHHHhcCCCEEE
Confidence 4567788999999999999999666
No 63
>1tks_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesis, 3,4-dihydroxy-2-B 4-phosphate synthase, synthetic gene, ISO; 1.60A {Candida albicans} SCOP: d.115.1.2 PDB: 1tku_A* 2ris_A 2riu_A*
Probab=35.53 E-value=20 Score=25.86 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHcCccEEEe
Q psy627 42 FSSKEDAIQYCQKNGWKFFVE 62 (89)
Q Consensus 42 F~s~e~Aiayae~~G~~Y~V~ 62 (89)
-..++++++||++||++..-.
T Consensus 175 mar~~~l~~fA~~h~l~iiti 195 (204)
T 1tks_A 175 MMRLDDCIQFGKKHGIKIINI 195 (204)
T ss_dssp BCBHHHHHHHHHHHTCCEEEH
T ss_pred cCCHHHHHHHHHHcCCcEEEH
Confidence 356899999999999987543
No 64
>3vwc_A Serine protease inhibitor 1; sulphur SAD phasing, beta trefoil, serine proteas hydrolase inhibitor; 1.50A {Coprinopsis cinerea} PDB: 3n0k_A
Probab=35.32 E-value=28 Score=24.01 Aligned_cols=36 Identities=14% Similarity=0.518 Sum_probs=25.8
Q ss_pred CCCCceEEEecCC-CC--cc--C--CCCCCCCC--CCCCCceeee
Q psy627 6 HNANNWFIQFDTR-ER--WE--N--PLMGWCST--GDPLSNLALN 41 (89)
Q Consensus 6 ~~t~~W~lefe~~-~~--~~--d--PLMGWtss--~D~~~qv~l~ 41 (89)
.....|+|+..|+ .+ +. + -=+||+-. +++.+||..+
T Consensus 79 ~~~~kW~it~~pq~g~~~y~I~~~s~~~GWv~P~~~e~~~QV~v~ 123 (149)
T 3vwc_A 79 MEDKKWIVTHQPQHGENVFTVVNASTEHGWVVPADAEELQQVEVR 123 (149)
T ss_dssp CCCCCEEEEECGGGCTTEEEEEETTTCCEEECCTTCCTTCBCEEE
T ss_pred CCCcEEEEEeCcccCCceEEEEcCCcCCceEccCCCCCceeEEEE
Confidence 3467899999986 22 22 3 34999995 6799998755
No 65
>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B
Probab=35.08 E-value=63 Score=21.58 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.4
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEec
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~ 63 (89)
..+.-++.+|=.+-|++.|+++.|+.
T Consensus 39 ~aVenPt~~EI~~a~~~Lgl~~~vE~ 64 (128)
T 1jid_A 39 KAVENPTATEIQDVCSAVGLNVFLEK 64 (128)
T ss_dssp TCBSSCCHHHHHHHHHHTTCCEEEET
T ss_pred HhccCCCHHHHHHHHHHcCCCeEEec
Confidence 45678999999999999999998853
No 66
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=34.73 E-value=29 Score=21.59 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=21.4
Q ss_pred CCCceeeecC----CHHHHHHHHHHcCccEEEec
Q psy627 34 PLSNLALNFS----SKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 34 ~~~qv~l~F~----s~e~Aiayae~~G~~Y~V~~ 63 (89)
++..+.+.+. ..++|++|.+.+|+..+|..
T Consensus 63 ~~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl~ 96 (106)
T 3dhx_A 63 KFGIMLTEMHGTQQDTQAAIAWLQEHHVKVEVLG 96 (106)
T ss_dssp EEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEEEEeCCHHHHHHHHHHHHHCCCEEEEee
Confidence 3444455553 35789999999999988754
No 67
>1k4i_A 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavin biosynthesi antimicrobial target, structure-based design, isomerase; 0.98A {Magnaporthe grisea} SCOP: d.115.1.2 PDB: 1k49_A 1k4l_A 1k4o_A 1k4p_A
Probab=34.45 E-value=25 Score=25.96 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHcCccEEEec
Q psy627 42 FSSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 42 F~s~e~Aiayae~~G~~Y~V~~ 63 (89)
-..++++++||++||++..-.+
T Consensus 193 mar~~~l~~fA~~h~L~iitI~ 214 (233)
T 1k4i_A 193 MLRGDECVAFARRWGLKVCTIE 214 (233)
T ss_dssp ECCHHHHHHHHHHTTCEEEEHH
T ss_pred cCCHHHHHHHHHHcCCcEEEHH
Confidence 3578999999999999876543
No 68
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=34.34 E-value=19 Score=23.84 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=20.4
Q ss_pred CCCCCCCCCc-eeeecCCHHHHHHHHHHc
Q psy627 28 WCSTGDPLSN-LALNFSSKEDAIQYCQKN 55 (89)
Q Consensus 28 Wtss~D~~~q-v~l~F~s~e~Aiayae~~ 55 (89)
||-+-|+..- =-.-|+|+++|.+|.+.|
T Consensus 48 Wte~e~t~~aGGiYLFes~~~AeaY~~~h 76 (113)
T 2hiq_A 48 WTESEKNHEAGGIYLFTDEKSALAYLEKH 76 (113)
T ss_dssp EEEETTTTEEEEEEEESSHHHHHHHHHHH
T ss_pred EEEcCCCCeeeEEEEeCCHHHHHHHHHHH
Confidence 6666666432 235589999999999876
No 69
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=33.63 E-value=40 Score=21.88 Aligned_cols=27 Identities=4% Similarity=-0.050 Sum_probs=22.1
Q ss_pred eeeecCCHHHHHHHHHHcCc--cEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGW--KFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~--~Y~V~~p 64 (89)
+.+..++.+++.+|++++|+ +|.|...
T Consensus 83 v~Is~d~~~~~~~~~~~~~~~~~fp~l~D 111 (171)
T 2pwj_A 83 ICVAINDPYTVNAWAEKIQAKDAIEFYGD 111 (171)
T ss_dssp EEEESSCHHHHHHHHHHTTCTTTSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHhCCCCceEEEEC
Confidence 35778999999999999996 6877654
No 70
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=33.12 E-value=36 Score=22.26 Aligned_cols=27 Identities=4% Similarity=0.023 Sum_probs=22.6
Q ss_pred eeeecCCHHHHHHHHHHc----CccEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKN----GWKFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~----G~~Y~V~~p 64 (89)
|-+..++.++..+|++++ |+.|.+...
T Consensus 68 v~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D 98 (186)
T 1n8j_A 68 YSVSTDTHFTHKAWHSSSETIAKIKYAMIGD 98 (186)
T ss_dssp EEEESSCHHHHHHHHHHCTTGGGCCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHcCcccCCceeEEEC
Confidence 467889999999999999 898877654
No 71
>1vjf_A DNA-binding protein, putative; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.62A {Caulobacter crescentus CB15} SCOP: d.116.1.1
Probab=32.94 E-value=28 Score=23.50 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=20.4
Q ss_pred CCCCceeeecCCHHHHHHHHHHcCccEEEec
Q psy627 33 DPLSNLALNFSSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 33 D~~~qv~l~F~s~e~Aiayae~~G~~Y~V~~ 63 (89)
|-...-.-...+++.+.+|-+++||+|++.+
T Consensus 4 ~~~~~~~~~~~~~~~v~~~L~~~~i~~~~~~ 34 (180)
T 1vjf_A 4 DKIHHHHHHMKTRADLFAFFDAHGVDHKTLD 34 (180)
T ss_dssp ---------CCCHHHHHHHHHHHTCCCEEEE
T ss_pred cccchhhcccchHHHHHHHHHHCCCCEEEEe
Confidence 4444445667899999999999999999865
No 72
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=32.82 E-value=19 Score=28.63 Aligned_cols=20 Identities=5% Similarity=0.368 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHHHcCccEEE
Q psy627 42 FSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 42 F~s~e~Aiayae~~G~~Y~V 61 (89)
|-|+++-++||+++|++|..
T Consensus 165 ~lsK~EI~~yA~~~GIp~~~ 184 (455)
T 1k92_A 165 LGGRHEMSEFMIACGFDYKM 184 (455)
T ss_dssp SSSHHHHHHHHHHTTCCCCC
T ss_pred CCCHHHHHHHHHHcCCCccc
Confidence 36999999999999999864
No 73
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=32.55 E-value=36 Score=20.68 Aligned_cols=28 Identities=18% Similarity=0.226 Sum_probs=23.4
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEeccC
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEEPK 65 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~p~ 65 (89)
+.+.-++.+++++-+++.|+.+.+.+|.
T Consensus 70 l~f~v~dvd~~~~~l~~~G~~~~~~~p~ 97 (128)
T 3g12_A 70 LGFQITDLEKTVQELVKIPGAMCILDPT 97 (128)
T ss_dssp EEEEESCHHHHHHHHTTSTTCEEEEEEE
T ss_pred EEEEeCCHHHHHHHHHHCCCceeccCce
Confidence 6778899999999999999996555554
No 74
>2zib_A Type II antifreeze protein; thermal hysteresis, lectin; 1.34A {Brachyopsis rostratus}
Probab=32.43 E-value=20 Score=22.24 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=25.0
Q ss_pred cCCCCCCCCCCCCCCceeeecCCHHHHHHHHHHcCccE
Q psy627 22 ENPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKF 59 (89)
Q Consensus 22 ~dPLMGWtss~D~~~qv~l~F~s~e~Aiayae~~G~~Y 59 (89)
..|..||..-++--=.+.-.-.|-++|..+|+.+|=.-
T Consensus 8 ~~~~~~~~~~~~~CY~~~~~~~~w~~A~~~C~~~g~~L 45 (133)
T 2zib_A 8 LVCPAGWTLHGQRCFYSEATAMTWDLAEANCVNKGGHL 45 (133)
T ss_dssp CCCCTTCEEETTEEEEEEEEEECHHHHHHHHHHTTSEE
T ss_pred eeCCCCEEEeCCEEEEEECCccCHHHHHHHHHHCCCEE
Confidence 36778887776642222222257899999999988554
No 75
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=32.25 E-value=28 Score=17.32 Aligned_cols=12 Identities=50% Similarity=0.670 Sum_probs=9.6
Q ss_pred HHHHHHHHHHcC
Q psy627 45 KEDAIQYCQKNG 56 (89)
Q Consensus 45 ~e~Aiayae~~G 56 (89)
-|.-|+||-+||
T Consensus 15 wekriayalkng 26 (26)
T 1hji_B 15 WEKRIAYALKNG 26 (26)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhcC
Confidence 366799999987
No 76
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=32.21 E-value=39 Score=22.62 Aligned_cols=28 Identities=4% Similarity=-0.076 Sum_probs=23.6
Q ss_pred eeeecCCHHHHHHHHHHcCcc--EEEeccC
Q psy627 38 LALNFSSKEDAIQYCQKNGWK--FFVEEPK 65 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~--Y~V~~p~ 65 (89)
+.+.-++.++..+|++++|++ |.+....
T Consensus 96 v~Is~d~~~~~~~f~~~~~~~~~fp~l~D~ 125 (184)
T 3uma_A 96 AVVAVNDLHVMGAWATHSGGMGKIHFLSDW 125 (184)
T ss_dssp EEEESSCHHHHHHHHHHHTCTTTSEEEECT
T ss_pred EEEECCCHHHHHHHHHHhCCCCceEEEEcC
Confidence 467889999999999999999 8887643
No 77
>3ro8_A Endo-1,4-beta-xylanase; glycosyl hydrolase family 10, GH10, (beta/alpha)8 fold, XYLA hydrolase; 1.34A {Paenibacillus SP} PDB: 3rdk_A 4e4p_A
Probab=32.07 E-value=29 Score=26.18 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=19.8
Q ss_pred eeecCCHHHHHHHHHHcCccEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~ 60 (89)
+..|...+..|+||++||+...
T Consensus 58 ~~~f~~aD~~v~~a~~ngi~vr 79 (341)
T 3ro8_A 58 NFTFTAADAMIDKVLAEGMKMH 79 (341)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE
T ss_pred ccchHHHHHHHHHHHhCCCEEE
Confidence 5789999999999999999974
No 78
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A
Probab=31.98 E-value=12 Score=28.07 Aligned_cols=22 Identities=14% Similarity=0.415 Sum_probs=19.8
Q ss_pred eecCCHHHHHHHHHHcCccEEE
Q psy627 40 LNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 40 l~F~s~e~Aiayae~~G~~Y~V 61 (89)
..|...+..|+||++||+....
T Consensus 58 ~~f~~~D~~v~~a~~~gi~v~g 79 (348)
T 1w32_A 58 FSFTNSDRLVSWAAQNGQTVHG 79 (348)
T ss_dssp ECCHHHHHHHHHHHHTTCEEEE
T ss_pred CCchHHHHHHHHHHHCCCEEEE
Confidence 6799999999999999999763
No 79
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron}
Probab=31.87 E-value=23 Score=29.45 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=21.6
Q ss_pred eecCCHHHHHHHHHHcCccEEEecc
Q psy627 40 LNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 40 l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
+..++-..=|+||.++||+|.+...
T Consensus 306 ~n~~~~k~yIDfAa~~G~~yvlvD~ 330 (641)
T 3a24_A 306 VNNPTYKAYIDFASANGIEYVILDE 330 (641)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECT
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEec
Confidence 4677788899999999999999854
No 80
>1t0f_A Transposon TN7 transposition protein TNSA; protein-protein complex, mixed alpha-beta, DNA binding protein; 1.85A {Escherichia coli} SCOP: a.4.5.27 c.52.1.16 PDB: 1f1z_A
Probab=31.69 E-value=31 Score=25.13 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCccEEEeccCC
Q psy627 45 KEDAIQYCQKNGWKFFVEEPKW 66 (89)
Q Consensus 45 ~e~Aiayae~~G~~Y~V~~p~~ 66 (89)
.|.+-+||+.+||+|.|.....
T Consensus 149 ~eier~y~~~~Gi~~~IvTe~e 170 (276)
T 1t0f_A 149 LELERRYWQQKQIPWFIFTDKE 170 (276)
T ss_dssp HHHHHHHHHHHTCCEEEECGGG
T ss_pred HHHHHHHHHHcCCEEEEECccc
Confidence 4567799999999999987543
No 81
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=31.47 E-value=23 Score=27.66 Aligned_cols=16 Identities=19% Similarity=0.455 Sum_probs=13.9
Q ss_pred HHHHHHcCccEEEecc
Q psy627 49 IQYCQKNGWKFFVEEP 64 (89)
Q Consensus 49 iayae~~G~~Y~V~~p 64 (89)
..||+++||.++|.+-
T Consensus 153 ~r~Ae~~g~k~evl~~ 168 (365)
T 1gqe_A 153 LRWAESRGFKTEIIEE 168 (365)
T ss_dssp HHHHHHTTCEEEEEEE
T ss_pred HHHHHHCCCeEEEEec
Confidence 4799999999999874
No 82
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=31.44 E-value=38 Score=20.69 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHcCccEEEecc
Q psy627 43 SSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~p 64 (89)
++.+++.+|++++|++|.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~d 101 (160)
T 3lor_A 80 MTPEALKVFIDEFGIKFPVAVD 101 (160)
T ss_dssp SCHHHHHHHHHHTTCCSCEEEE
T ss_pred CCHHHHHHHHHHcCCCCcEEEC
Confidence 7999999999999999977553
No 83
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=31.28 E-value=31 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=17.0
Q ss_pred CceeeecCCHHHHHHHHHH
Q psy627 36 SNLALNFSSKEDAIQYCQK 54 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiayae~ 54 (89)
-++.|.|.+.+||-.|.++
T Consensus 117 c~~GLnFade~EA~~F~~~ 135 (152)
T 1mke_A 117 CQVALNFANEEEAKKFRKA 135 (152)
T ss_dssp SEEEEEESSHHHHHHHHHH
T ss_pred cEEEEeeCCHHHHHHHHHH
Confidence 5689999999999999876
No 84
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=30.37 E-value=30 Score=22.54 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHcCccEEEec
Q psy627 44 SKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~ 63 (89)
+.+.+.+|.+++|++|++.+
T Consensus 3 ~~~~v~~~L~~~~i~~~~~~ 22 (152)
T 3op6_A 3 PVKKLKQFLDSHKIKYLSIA 22 (152)
T ss_dssp HHHHHHHHHHHTTCCEEEEE
T ss_pred cHHHHHHHHHHcCCceEEEE
Confidence 35789999999999999865
No 85
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=30.28 E-value=43 Score=19.11 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=17.0
Q ss_pred eeeecCCHHHHHHHHHH-cCccE
Q psy627 38 LALNFSSKEDAIQYCQK-NGWKF 59 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~Y 59 (89)
--+.|.+.|+|.+-.+. ||..+
T Consensus 60 afV~f~~~~~a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 60 AMVAFESRDEATAAVIDLNDRPI 82 (95)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEECCHHHHHHHHHHhCCCeE
Confidence 35899999999988874 77543
No 86
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A
Probab=30.15 E-value=19 Score=26.66 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.2
Q ss_pred eeecCCHHHHHHHHHHcCccEEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
+..|...+..|+||++||+....
T Consensus 58 ~~~f~~~D~~v~~a~~~gi~v~g 80 (313)
T 1v0l_A 58 QFNFSSADRVYNWAVQNGKQVRG 80 (313)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccCchHHHHHHHHHHHCCCEEEE
Confidence 57888999999999999999754
No 87
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3
Probab=29.96 E-value=21 Score=26.21 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=21.1
Q ss_pred eeecCCHHHHHHHHHHcCccEEEec
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V~~ 63 (89)
+..|...+..|++|++||+......
T Consensus 59 ~~~f~~~D~~v~~a~~~gi~v~ght 83 (303)
T 1ta3_B 59 NFGWSGADYLVDYATQHNKKVRGHT 83 (303)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccCchHHHHHHHHHHHCCCEEEEee
Confidence 5678999999999999999975433
No 88
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=29.79 E-value=49 Score=22.37 Aligned_cols=27 Identities=4% Similarity=-0.078 Sum_probs=22.8
Q ss_pred eeeecCCHHHHHHHHHHcCcc-EEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGWK-FFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~-Y~V~~p 64 (89)
+.++.++.+++-+|++++|+. |.+...
T Consensus 73 v~is~d~~~~~~~~~~~~~~~~~~~l~D 100 (241)
T 1nm3_A 73 LVVSVNDTFVMNAWKEDEKSENISFIPD 100 (241)
T ss_dssp EEEESSCHHHHHHHHHHTTCTTSEEEEC
T ss_pred EEEEcCCHHHHHHHHHhcCCCceEEEEC
Confidence 467889999999999999997 887654
No 89
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=29.62 E-value=41 Score=20.70 Aligned_cols=29 Identities=14% Similarity=-0.064 Sum_probs=21.7
Q ss_pred CCCceeeecCC-----HHHHHHHHHHcCccEEEe
Q psy627 34 PLSNLALNFSS-----KEDAIQYCQKNGWKFFVE 62 (89)
Q Consensus 34 ~~~qv~l~F~s-----~e~Aiayae~~G~~Y~V~ 62 (89)
+...+.|.+.- .++|++|.+.+|+..+|.
T Consensus 62 ~~G~L~v~l~G~~~~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 62 TVGFLVLHIPYISSVDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp EEEEEEEEESCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEEEEEeCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 34455666653 578999999999998886
No 90
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A*
Probab=29.43 E-value=18 Score=27.30 Aligned_cols=25 Identities=8% Similarity=0.340 Sum_probs=21.2
Q ss_pred eeecCCHHHHHHHHHHcCccEEEec
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V~~ 63 (89)
+..|...+..|++|++||+....-.
T Consensus 62 ~~~f~~~D~~v~~a~~~gi~v~ght 86 (356)
T 2uwf_A 62 EWNWEGADKIVEFARKHNMELRFHT 86 (356)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEEECC
T ss_pred ccCchHHHHHHHHHHHCCCEEEEee
Confidence 5678999999999999999976443
No 91
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=29.26 E-value=16 Score=23.27 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=22.4
Q ss_pred eeeecCCHHHHHHHHHHcCc-cEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGW-KFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~-~Y~V~~p 64 (89)
|-+..++.++..+|++++|+ +|.+...
T Consensus 79 v~Is~d~~~~~~~~~~~~~~~~~~~l~D 106 (165)
T 1q98_A 79 LCISADLPFAQARFCGAEGIENAKTVST 106 (165)
T ss_dssp EEEESSCHHHHTTCTTTTTCTTEEEEEC
T ss_pred EEEeCCCHHHHHHHHHHcCCCceEEeec
Confidence 46778999999999999999 7987654
No 92
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=29.24 E-value=36 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=17.0
Q ss_pred CceeeecCCHHHHHHHHHH
Q psy627 36 SNLALNFSSKEDAIQYCQK 54 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiayae~ 54 (89)
.++.|.|.+.+||-.|.++
T Consensus 134 c~~GLnFade~EA~~F~~~ 152 (169)
T 2ifs_A 134 CQVALNFANEEEAKKFRKA 152 (169)
T ss_dssp SEEEEECSCHHHHHHHHHH
T ss_pred cEEEEeeCCHHHHHHHHHH
Confidence 5689999999999999876
No 93
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=29.02 E-value=47 Score=18.49 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=17.1
Q ss_pred eeeecCCHHHHHHHHHH-cCccE
Q psy627 38 LALNFSSKEDAIQYCQK-NGWKF 59 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~Y 59 (89)
--+.|.+.|+|.+-++. +|..+
T Consensus 50 afV~f~~~~~a~~A~~~l~g~~~ 72 (88)
T 4a8x_A 50 AYVEFENPDEAEKALKHMDGGQI 72 (88)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEEecHHHHHHHHHHcCCCeE
Confidence 45899999999988875 76543
No 94
>3gm5_A Lactoylglutathione lyase and related lyases; sheet-helix-sheet-sheet-sheet motif, isomerase; HET: CIT; 2.00A {Thermoanaerobacter tengcongensis}
Probab=28.85 E-value=52 Score=20.27 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=23.2
Q ss_pred CCceeeecCCHHHHHHHHHHcCccEEEe
Q psy627 35 LSNLALNFSSKEDAIQYCQKNGWKFFVE 62 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~~G~~Y~V~ 62 (89)
+..+.+..++.+++++.++++|+.+.-.
T Consensus 105 ~~Hiaf~v~di~~~~~~l~~~G~~~~~~ 132 (159)
T 3gm5_A 105 IHHIAFVVKDMDRKVEELYRKGMKVIQK 132 (159)
T ss_dssp EEEEEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEEEcCCHHHHHHHHHHCCCcEeec
Confidence 3467788899999999999999998443
No 95
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A
Probab=28.76 E-value=26 Score=26.71 Aligned_cols=26 Identities=15% Similarity=0.400 Sum_probs=22.4
Q ss_pred eeecCCHHHHHHHHHHcCccEEEecc
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
+..|...+..|+||++|||......+
T Consensus 72 ~~~f~~~D~~v~~a~~~gi~vrghtl 97 (379)
T 1r85_A 72 KFNFEQADRIVKFAKANGMDIRFHTL 97 (379)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred ccCchhHHHHHHHHHHCCCEEEEecc
Confidence 57789999999999999999876554
No 96
>3ebr_A Uncharacterized RMLC-like cupin; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.60A {Ralstonia eutropha JMP134}
Probab=28.75 E-value=30 Score=23.22 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHcCcc
Q psy627 42 FSSKEDAIQYCQKNGWK 58 (89)
Q Consensus 42 F~s~e~Aiayae~~G~~ 58 (89)
|.-.+...+||+++||.
T Consensus 134 ~~~~~~~~~~~~~~g~~ 150 (159)
T 3ebr_A 134 KTSMDRYLNYCKAHGIR 150 (159)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 34567889999999997
No 97
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=28.71 E-value=80 Score=24.36 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=26.1
Q ss_pred CCCCCCCCCceeeecCCHH---HHHHHHHHcCccEEEec
Q psy627 28 WCSTGDPLSNLALNFSSKE---DAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 28 Wtss~D~~~qv~l~F~s~e---~Aiayae~~G~~Y~V~~ 63 (89)
|....++.-...+.=.|.| +||+||.++|+.+.|..
T Consensus 45 w~~~~~~~P~~vv~p~~~~~v~~~v~~a~~~~~~~~~r~ 83 (500)
T 3tsh_A 45 WSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRS 83 (500)
T ss_dssp TTSTTSCCCSEEECCSSHHHHHHHHHHHHHTTCEEEEES
T ss_pred ccCCCCCCceEEEEcCCHHHHHHHHHHHHHCCCcEEEEc
Confidence 7766666555555545544 58999999999998865
No 98
>1g57_A DHBP synthase, 3,4-dihydroxy-2-butanone 4-phosphate synthase; riboflavine biosynthesis, skeletal rearrangement, antimicrobial target; 1.40A {Escherichia coli} SCOP: d.115.1.2 PDB: 1g58_A 1iez_A 3ls6_A 3lrj_A 3lqu_A 3h07_A
Probab=28.71 E-value=36 Score=24.69 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=17.6
Q ss_pred cCCHHHHHHHHHHcCccEEEec
Q psy627 42 FSSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 42 F~s~e~Aiayae~~G~~Y~V~~ 63 (89)
-...+++++||++||++..-.+
T Consensus 182 mar~~~l~~fA~~h~l~~iti~ 203 (217)
T 1g57_A 182 MARAPECIEFANKHNMALVTIE 203 (217)
T ss_dssp BCCHHHHHHHHHHTTCEEEEHH
T ss_pred ccCHHHHHHHHHHcCCCEEEHH
Confidence 4578999999999999875443
No 99
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12
Probab=28.56 E-value=26 Score=21.73 Aligned_cols=20 Identities=5% Similarity=0.125 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHcCccEEEec
Q psy627 44 SKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~ 63 (89)
+...|.++.+.+|++|++..
T Consensus 12 ~C~kak~~L~~~gi~~~~~d 31 (114)
T 1rw1_A 12 TMKKARTWLDEHKVAYDFHD 31 (114)
T ss_dssp HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCceEEEe
Confidence 45789999999999998765
No 100
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=28.46 E-value=79 Score=18.78 Aligned_cols=27 Identities=15% Similarity=-0.017 Sum_probs=21.2
Q ss_pred eeecC-CHHHHHHHHHHcCccEEEeccC
Q psy627 39 ALNFS-SKEDAIQYCQKNGWKFFVEEPK 65 (89)
Q Consensus 39 ~l~F~-s~e~Aiayae~~G~~Y~V~~p~ 65 (89)
.+..+ +.++..+|++++|+.|.+....
T Consensus 68 ~v~~d~~~~~~~~~~~~~~~~~~~~~d~ 95 (142)
T 3ewl_A 68 AIYPDENREEWATKAVYMPQGWIVGWNK 95 (142)
T ss_dssp EEECSSCHHHHHHHHTTSCTTCEEEECT
T ss_pred EEEecCCHHHHHHHHHHcCCCcceeeCC
Confidence 34444 7889999999999999887644
No 101
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=28.42 E-value=35 Score=23.38 Aligned_cols=18 Identities=17% Similarity=0.135 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHcCccEE
Q psy627 43 SSKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~ 60 (89)
-+.++|.+||+++|+.|.
T Consensus 136 V~~~e~~~~a~~~~~~~~ 153 (216)
T 4dkx_A 136 VSIEEGERKAKELNVMFI 153 (216)
T ss_dssp SCHHHHHHHHHHHTCEEE
T ss_pred ccHHHHhhHHHHhCCeeE
Confidence 378999999999999875
No 102
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=28.28 E-value=44 Score=20.34 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=20.6
Q ss_pred CCceeeecC----CHHHHHHHHHHcCccEEEe
Q psy627 35 LSNLALNFS----SKEDAIQYCQKNGWKFFVE 62 (89)
Q Consensus 35 ~~qv~l~F~----s~e~Aiayae~~G~~Y~V~ 62 (89)
...+.+.+. ..++|++|.+.+|+..+|.
T Consensus 66 ~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 66 FGMMVAELFGNEQDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEEEEeCCHHHHHHHHHHHHHcCCEEEEe
Confidence 344555554 3478999999999998886
No 103
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=28.20 E-value=41 Score=19.25 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=20.1
Q ss_pred CCCCCceee-ecCCHHHHHHHHHHc---CccEEEe
Q psy627 32 GDPLSNLAL-NFSSKEDAIQYCQKN---GWKFFVE 62 (89)
Q Consensus 32 ~D~~~qv~l-~F~s~e~Aiayae~~---G~~Y~V~ 62 (89)
++++-.|++ -|.|+++|.+.|++. |++..|.
T Consensus 42 ~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~~iv 76 (79)
T 1x60_A 42 KDGLYKVQIGAFSSKDNADTLAARAKNAGFDAIVI 76 (79)
T ss_dssp ETTEEEEEEEEESSHHHHHHHHHHHHHHTSCCEEE
T ss_pred CCcEEEEEECCcCCHHHHHHHHHHHHHcCCceEEE
Confidence 344445554 588888888888753 6665554
No 104
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=28.07 E-value=26 Score=27.23 Aligned_cols=16 Identities=13% Similarity=0.410 Sum_probs=14.1
Q ss_pred HHHHHHcCccEEEecc
Q psy627 49 IQYCQKNGWKFFVEEP 64 (89)
Q Consensus 49 iayae~~G~~Y~V~~p 64 (89)
..||+++||.++|.+-
T Consensus 132 ~r~ae~~g~k~ev~~~ 147 (354)
T 3d5a_X 132 LRFAEEMGFETEVLDS 147 (354)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEeC
Confidence 5799999999999874
No 105
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=28.02 E-value=52 Score=18.13 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=17.2
Q ss_pred eeeecCCHHHHHHHHHH-cCccE
Q psy627 38 LALNFSSKEDAIQYCQK-NGWKF 59 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~Y 59 (89)
--+.|.+.|+|.+-.+. +|..+
T Consensus 46 afV~f~~~~~a~~a~~~l~g~~~ 68 (83)
T 3md1_A 46 GFVSFTSQDDAQNAMDSMQGQDL 68 (83)
T ss_dssp EEEEESCHHHHHHHHHHHTTCEE
T ss_pred EEEEECCHHHHHHHHHHhcCCee
Confidence 45889999999988875 66653
No 106
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=27.96 E-value=28 Score=22.90 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=17.3
Q ss_pred CCceeeecCCHHHHHHHHHH
Q psy627 35 LSNLALNFSSKEDAIQYCQK 54 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~ 54 (89)
..+.-|+|.|.|+|-.|.+.
T Consensus 95 ~~~~~lrfks~e~A~~f~~~ 114 (130)
T 3n7c_A 95 LETFIIKVKQKADGRRLVGA 114 (130)
T ss_dssp EEEEEEECSSHHHHHHHHHH
T ss_pred eEEEEEEECCHHHHHHHHHH
Confidence 46789999999999999764
No 107
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=27.85 E-value=26 Score=27.40 Aligned_cols=16 Identities=44% Similarity=0.906 Sum_probs=14.1
Q ss_pred HHHHHHcCccEEEecc
Q psy627 49 IQYCQKNGWKFFVEEP 64 (89)
Q Consensus 49 iayae~~G~~Y~V~~p 64 (89)
..||+++||.++|.+-
T Consensus 150 ~r~Ae~~g~kvevl~~ 165 (371)
T 1zbt_A 150 QKYAENQGWKFEVMEA 165 (371)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEec
Confidence 5899999999999874
No 108
>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase, enzyme, ultra HIG resolution, cryo temperature, 1; HET: PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A* 1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A* 1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A
Probab=27.83 E-value=22 Score=25.92 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.6
Q ss_pred eeecCCHHHHHHHHHHcCccEEEe
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFVE 62 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V~ 62 (89)
+..|...++.|++|++||+.....
T Consensus 60 ~~~f~~~D~~v~~a~~~gi~v~gh 83 (303)
T 1i1w_A 60 NFNFAGADYLVNWAQQNGKLIRGH 83 (303)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEEEE
T ss_pred ccChhhHHHHHHHHHHCCCEEEEe
Confidence 567889999999999999997543
No 109
>3ln3_A Dihydrodiol dehydrogenase; putative reductase, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MLY MSE NAD; 1.18A {Mus musculus} SCOP: c.1.7.1
Probab=27.82 E-value=38 Score=24.51 Aligned_cols=24 Identities=8% Similarity=0.227 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHcCccEEEeccCCC
Q psy627 44 SKEDAIQYCQKNGWKFFVEEPKWK 67 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~p~~~ 67 (89)
..++-+.||+++||.+..-.|-..
T Consensus 199 ~~~~l~~~~~~~gi~v~a~spL~~ 222 (324)
T 3ln3_A 199 NQRXLLDYCESXDIVLVAYGALGT 222 (324)
T ss_dssp CCHHHHHHHHHTTCEEEEESTTSC
T ss_pred chHHHHHHHHHcCCEEEEecCCCC
Confidence 357899999999999999888654
No 110
>2ebb_A Pterin-4-alpha-carbinolamine dehydratase; coenzyme biosyntheses, GK1984, structural genomics, NPPSFA; 1.60A {Geobacillus kaustophilus}
Probab=27.74 E-value=34 Score=21.58 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCCCceeeecCCHHHHHHHHHHcC
Q psy627 23 NPLMGWCSTGDPLSNLALNFSSKEDAIQYCQKNG 56 (89)
Q Consensus 23 dPLMGWtss~D~~~qv~l~F~s~e~Aiayae~~G 56 (89)
..|-||.-.++..-.-...|.+-.+|++|..+-+
T Consensus 13 ~~l~gW~~~~~~~i~r~f~F~~f~~a~~F~~~Va 46 (101)
T 2ebb_A 13 EKADGWKLADERWIVKKYRFQDYLQGIEFVRRIA 46 (101)
T ss_dssp HTSTTCEEETTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred hcCCCCeECCCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 4677998877762223688999999999876543
No 111
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=27.74 E-value=25 Score=27.42 Aligned_cols=16 Identities=13% Similarity=0.447 Sum_probs=14.1
Q ss_pred HHHHHHcCccEEEecc
Q psy627 49 IQYCQKNGWKFFVEEP 64 (89)
Q Consensus 49 iayae~~G~~Y~V~~p 64 (89)
..||+++||.++|.+-
T Consensus 141 ~r~Ae~~g~k~evl~~ 156 (365)
T 2ihr_1 141 TRFAERQGFQVEVVDL 156 (365)
T ss_dssp HHHHHTTTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEec
Confidence 5799999999999874
No 112
>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan degradation, family 10, structural genomics, NPPSFA; 1.80A {Clostridium stercorarium}
Probab=27.67 E-value=22 Score=26.73 Aligned_cols=23 Identities=13% Similarity=0.471 Sum_probs=20.3
Q ss_pred eeecCCHHHHHHHHHHcCccEEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
+..|...+..|++|++||+....
T Consensus 59 ~~~f~~~D~~v~~a~~~gi~v~g 81 (356)
T 2dep_A 59 NFQWADADRIVQFAKENGMELRF 81 (356)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccCchHHHHHHHHHHHCCCEEEE
Confidence 56789999999999999999754
No 113
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens}
Probab=27.27 E-value=26 Score=26.45 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.9
Q ss_pred eeecCCHHHHHHHHHHcCccEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~ 60 (89)
+..|...+..|+||++||+...
T Consensus 61 ~~~f~~aD~~v~~a~~~gi~vr 82 (335)
T 4f8x_A 61 VFNFTEGEQFLEVAERFGSKVR 82 (335)
T ss_dssp EECCHHHHHHHHHHHHTTCEEE
T ss_pred ccCcchhHHHHHHHHHCCCEEE
Confidence 6789999999999999999875
No 114
>1s7i_A Hypothetical protein PA1349; structural genomics, protein structure initiative, pseudomon aeruginosa, MCSG, PSI; 1.80A {Pseudomonas aeruginosa} SCOP: d.58.4.9
Probab=27.27 E-value=30 Score=22.37 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=15.6
Q ss_pred eeecCCHHHHHHHHHHc
Q psy627 39 ALNFSSKEDAIQYCQKN 55 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~ 55 (89)
-|..+|+|+||+.|++.
T Consensus 89 iie~~s~deA~e~A~~~ 105 (124)
T 1s7i_A 89 LIEARDLNQALQIAAKI 105 (124)
T ss_dssp EEEESSHHHHHHHHTTC
T ss_pred EEEeCCHHHHHHHHHhC
Confidence 68999999999999875
No 115
>2p25_A Glyoxalase family protein; structural genomics, MCSG, PSI-2, protein struct initiative, midwest center for structural genomics, oxidore; 1.70A {Enterococcus faecalis}
Probab=27.12 E-value=86 Score=17.79 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.8
Q ss_pred CCceeeecCCHHHHHHHHHHcCccE
Q psy627 35 LSNLALNFSSKEDAIQYCQKNGWKF 59 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~~G~~Y 59 (89)
...+.+..++.+++++.++++|+.+
T Consensus 74 ~~~~~~~v~d~~~~~~~l~~~G~~~ 98 (126)
T 2p25_A 74 LRHLAFKVEHIEEVIAFLNEQGIET 98 (126)
T ss_dssp CCCEEEECSCHHHHHHHHHHTTCCC
T ss_pred ceEEEEEeCCHHHHHHHHHHcCCcc
Confidence 3467888899999999999999985
No 116
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=26.83 E-value=52 Score=19.23 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=16.4
Q ss_pred eeeecCCHHHHHHHHHH-cCcc
Q psy627 38 LALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~ 58 (89)
.-+.|.+.|+|.+-.+. +|..
T Consensus 73 afV~f~~~~~a~~A~~~l~g~~ 94 (107)
T 3ulh_A 73 ADVHFERKADALKAMKQYNGVP 94 (107)
T ss_dssp EEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEECCHHHHHHHHHHhCCCE
Confidence 35789999999988775 7754
No 117
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A*
Probab=26.82 E-value=22 Score=25.94 Aligned_cols=23 Identities=13% Similarity=0.443 Sum_probs=19.8
Q ss_pred eeecCCHHHHHHHHHHcCccEEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
+..|...++.|++|++||+....
T Consensus 57 ~~~~~~~D~~~~~a~~~gi~v~g 79 (315)
T 3cui_A 57 SFSFGAGDRVASYAADTGKELYG 79 (315)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEEE
T ss_pred cCChHHHHHHHHHHHHCCCEEEE
Confidence 45689999999999999999754
No 118
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase, family F/10 of glycosyl hydrolases, glycosyltransferase; 1.40A {Clostridium thermocellum} SCOP: c.1.8.3
Probab=26.53 E-value=24 Score=26.35 Aligned_cols=22 Identities=18% Similarity=0.558 Sum_probs=19.5
Q ss_pred eeecCCHHHHHHHHHHcCccEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~ 60 (89)
+..|...++.|++|++||+...
T Consensus 83 ~~~f~~~D~~v~~a~~~gi~v~ 104 (347)
T 1xyz_A 83 VFDFSKGDQLLAFAERNGMQMR 104 (347)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEE
T ss_pred cCChHHHHHHHHHHHHCCCEEE
Confidence 4568899999999999999975
No 119
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A* 3msd_A* 3msg_A* 3mui_A* 3ms8_A
Probab=26.47 E-value=24 Score=26.10 Aligned_cols=23 Identities=4% Similarity=0.153 Sum_probs=20.2
Q ss_pred eeecCCHHHHHHHHHHcCccEEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
+..|...+..|++|++||+....
T Consensus 58 ~~~f~~~D~~v~~a~~~gi~v~g 80 (331)
T 1n82_A 58 KFTFQEADRIVDFACSHRMAVRG 80 (331)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccChHHHHHHHHHHHHCCCEEEE
Confidence 56788999999999999999754
No 120
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=26.44 E-value=29 Score=26.87 Aligned_cols=16 Identities=31% Similarity=0.802 Sum_probs=14.1
Q ss_pred HHHHHHcCccEEEecc
Q psy627 49 IQYCQKNGWKFFVEEP 64 (89)
Q Consensus 49 iayae~~G~~Y~V~~p 64 (89)
..||+++||.++|.+-
T Consensus 113 ~r~ae~~g~kvevl~~ 128 (342)
T 1rq0_A 113 TRYAERKGWNLEVAEI 128 (342)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHcCCeEEEEec
Confidence 5799999999999874
No 121
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=26.24 E-value=32 Score=21.43 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=16.4
Q ss_pred ceeeecCC----HHHHHHHHHHcCcc
Q psy627 37 NLALNFSS----KEDAIQYCQKNGWK 58 (89)
Q Consensus 37 qv~l~F~s----~e~Aiayae~~G~~ 58 (89)
.+.|-|.- -+.|-.||++|+++
T Consensus 30 ~lkLpyN~~dnP~~aAqkFi~~n~Lp 55 (80)
T 2k89_A 30 SYKLPYNTSDDPWLTAYNFLQKNDLN 55 (80)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred ccccCccCCCCHHHHHHHHHHHcCCC
Confidence 35555543 47899999999987
No 122
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.22 E-value=48 Score=19.86 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=17.8
Q ss_pred eeeecCCHHHHHHHHHH-cCccE
Q psy627 38 LALNFSSKEDAIQYCQK-NGWKF 59 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~Y 59 (89)
--+.|.+.|+|.+-.+. ||..+
T Consensus 66 afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 66 AYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp EEEEESSHHHHHHHHHHHTTEEE
T ss_pred EEEEECcHHHHHHHHHHhCCCEE
Confidence 45899999999998887 77654
No 123
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=26.16 E-value=57 Score=18.14 Aligned_cols=21 Identities=29% Similarity=0.110 Sum_probs=16.3
Q ss_pred eeeecCCHHHHHHHHHH-cCcc
Q psy627 38 LALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~ 58 (89)
--+.|.+.|+|.+-.+. +|..
T Consensus 51 afV~f~~~~~A~~A~~~l~g~~ 72 (87)
T 3bs9_A 51 GFVSFFNKWDAENAIQQMGGQW 72 (87)
T ss_dssp EEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEECCHHHHHHHHHHcCCCE
Confidence 35889999999988875 6643
No 124
>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}
Probab=26.11 E-value=28 Score=21.80 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHcCccEEEec
Q psy627 43 SSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~ 63 (89)
++...|.++.+.+|++|++..
T Consensus 16 ~~C~ka~~~L~~~gi~y~~~d 36 (120)
T 2kok_A 16 DTMKKARIWLEDHGIDYTFHD 36 (120)
T ss_dssp HHHHHHHHHHHHHTCCEEEEE
T ss_pred hHHHHHHHHHHHcCCcEEEEe
Confidence 356899999999999998765
No 125
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.10 E-value=57 Score=19.31 Aligned_cols=23 Identities=13% Similarity=0.261 Sum_probs=17.7
Q ss_pred ceeeecCCHHHHHHHHHH-cCccE
Q psy627 37 NLALNFSSKEDAIQYCQK-NGWKF 59 (89)
Q Consensus 37 qv~l~F~s~e~Aiayae~-~G~~Y 59 (89)
-.-+.|.+.|+|.+-.+. +|..+
T Consensus 67 ~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 67 DATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp EEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCcc
Confidence 346899999999988875 66543
No 126
>3jst_A Putative pterin-4-alpha-carbinolamine dehydratase; lyase, structural genomics, seattle structural genomics CENT infectious disease, ssgcid; 2.10A {Brucella melitensis} SCOP: d.74.1.0
Probab=26.05 E-value=56 Score=20.25 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=24.6
Q ss_pred CCCCCCCCCCCCC-CceeeecCCHHHHHHHHHHcC
Q psy627 23 NPLMGWCSTGDPL-SNLALNFSSKEDAIQYCQKNG 56 (89)
Q Consensus 23 dPLMGWtss~D~~-~qv~l~F~s~e~Aiayae~~G 56 (89)
..|-||+-..+.. -.-...|++-.+|++|..+-+
T Consensus 16 ~~l~gW~~~~~~~~l~r~f~f~~f~~a~~f~~~Va 50 (97)
T 3jst_A 16 RALDGWQKVDGREAITRSFKFKDFSTAFGFMAQAA 50 (97)
T ss_dssp HTSTTCEECTTSSCEEEEEECSSHHHHHHHHHHHH
T ss_pred hcCCCCeEeCCCCeEEEEEEeCCHHHHHHHHHHHH
Confidence 4678998875542 234689999999999876543
No 127
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=25.93 E-value=45 Score=20.26 Aligned_cols=28 Identities=18% Similarity=0.008 Sum_probs=21.0
Q ss_pred CCceeeecC----CHHHHHHHHHHcCccEEEe
Q psy627 35 LSNLALNFS----SKEDAIQYCQKNGWKFFVE 62 (89)
Q Consensus 35 ~~qv~l~F~----s~e~Aiayae~~G~~Y~V~ 62 (89)
...+.|.+. ..++|++|.+.+|+..+|.
T Consensus 66 ~G~L~v~l~G~~~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 66 VGSLYIQLLGEEQNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHTTCEEEES
T ss_pred EEEEEEEEECCHHHHHHHHHHHHHcCCEEEEc
Confidence 344555554 3678999999999998886
No 128
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=25.87 E-value=37 Score=21.31 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=26.3
Q ss_pred eeecCCHHHHHHHHHHcCcc---EEEeccCCCCCCccccc
Q psy627 39 ALNFSSKEDAIQYCQKNGWK---FFVEEPKWKTPKVKSYA 75 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~---Y~V~~p~~~~~~~ksYa 75 (89)
...|+|..+=|+|-.++-+. ..+..|-.+...+.+||
T Consensus 80 ~~~F~sl~eLV~~y~~~~l~~~~~~L~~P~~~~~p~~~~~ 119 (119)
T 2cs0_A 80 KVAHTSLDALVTFHQQKPIEPRRELLTQPCRQKDSGPSSG 119 (119)
T ss_dssp SCCBSSHHHHHHHHTTSCCSSCCCCCCSBCCCSSCCSSCC
T ss_pred CCcCCCHHHHHHHHhhCcCCCCCCEeCccCCCCCCCCCCC
Confidence 46799999999999988764 33445655555555664
No 129
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=25.81 E-value=38 Score=20.69 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHcCccEEEecc
Q psy627 43 SSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~p 64 (89)
++.++..+|++++|+.|.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~d 99 (158)
T 3eyt_A 78 MTPISLKAFLHEYRIKFPVGVD 99 (158)
T ss_dssp SCHHHHHHHHHHTTCCSCEEEE
T ss_pred CCHHHHHHHHHHcCCCceEEEc
Confidence 5999999999999999977553
No 130
>1usm_A DCOH, hepatocyte nuclear factor 1-alpha; transcriptional stimulator, dimerization cofactor, dehydratase, 4A-carbinolamine dehydratase; 1.2A {Thermus thermophilus} SCOP: d.74.1.1 PDB: 1uso_A
Probab=25.79 E-value=44 Score=20.00 Aligned_cols=31 Identities=16% Similarity=0.410 Sum_probs=20.5
Q ss_pred CCCCCCCCCCC-ceeeecCCHHHHHHHHHHcC
Q psy627 26 MGWCSTGDPLS-NLALNFSSKEDAIQYCQKNG 56 (89)
Q Consensus 26 MGWtss~D~~~-qv~l~F~s~e~Aiayae~~G 56 (89)
+||.-.+++.. .-...|.+-.+|++|..+-+
T Consensus 1 ~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va 32 (80)
T 1usm_A 1 MDWEERENLKRLVKTFAFPNFREALDFANRVG 32 (80)
T ss_dssp CCCEEC---CCEEEEEECSSHHHHHHHHHHHH
T ss_pred CCCeEeCCccEEEEEEEeCCHHHHHHHHHHHH
Confidence 58887766532 34688999999999876543
No 131
>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}
Probab=25.37 E-value=29 Score=21.99 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHcCccEEEec
Q psy627 44 SKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~ 63 (89)
+...|.++.+.+|++|++..
T Consensus 16 ~c~ka~~~L~~~gi~~~~~d 35 (119)
T 3f0i_A 16 KSRETLALLENQGIAPQVIK 35 (119)
T ss_dssp HHHHHHHHHHHTTCCCEEEC
T ss_pred HHHHHHHHHHHcCCceEEEE
Confidence 45789999999999999764
No 132
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=25.34 E-value=30 Score=20.15 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=16.0
Q ss_pred eeecCCHHHHHHHHHHcCc
Q psy627 39 ALNFSSKEDAIQYCQKNGW 57 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~ 57 (89)
+|.-.+..+++++|.++||
T Consensus 63 kL~~~~~~~l~~~a~~~gl 81 (82)
T 1je8_A 63 KMKLKSRVEAAVWVHQERI 81 (82)
T ss_dssp HTTCSSHHHHHHHHHHTTC
T ss_pred HHcCCCHHHHHHHHHHcCC
Confidence 3566789999999999997
No 133
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=25.25 E-value=59 Score=18.54 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=17.0
Q ss_pred eeeecCCHHHHHHHHHH-cCccE
Q psy627 38 LALNFSSKEDAIQYCQK-NGWKF 59 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~Y 59 (89)
.-+.|.+.++|..-.+. +|..+
T Consensus 54 afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 54 AFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEE
T ss_pred EEEEeCCHHHHHHHHHHhCCCEE
Confidence 45889999999988875 77543
No 134
>2zfh_A CUTA; human brain, trimeric structure, structural genomics; 2.05A {Homo sapiens} SCOP: d.58.5.2 PDB: 1xk8_A
Probab=25.07 E-value=64 Score=22.91 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=16.7
Q ss_pred CCCCCCCCCCCCC----CceeeecCCHHHHHHHHHH
Q psy627 23 NPLMGWCSTGDPL----SNLALNFSSKEDAIQYCQK 54 (89)
Q Consensus 23 dPLMGWtss~D~~----~qv~l~F~s~e~Aiayae~ 54 (89)
.|.|| |.+... .-|-.++++.|+|.+.|+.
T Consensus 54 ~~~~~--s~~~~~~~~~ilV~tT~pd~e~A~~IAr~ 87 (179)
T 2zfh_A 54 SPASD--SGSGYVPGSVSAAFVTCPNEKVAKEIARA 87 (179)
T ss_dssp ---------CCCCTTSEEEEEEEESSHHHHHHHHHH
T ss_pred Ccccc--cccccCCCCeEEEEEecCCHHHHHHHHHH
Confidence 78999 333332 2367899999999999874
No 135
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A
Probab=25.04 E-value=33 Score=25.88 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=20.4
Q ss_pred eeecCCHHHHHHHHHHcCccEEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
+..|...+..|+||++||+....
T Consensus 78 ~~~f~~~D~~v~~a~~~gi~vrg 100 (341)
T 3niy_A 78 RYNFTPAEKHVEFAEENNMIVHG 100 (341)
T ss_dssp EEECHHHHHHHHHHHHTTCEEEE
T ss_pred ccChHHHHHHHHHHHHCCCeEEe
Confidence 57789999999999999999753
No 136
>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,, hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3
Probab=24.95 E-value=25 Score=25.41 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.6
Q ss_pred eeecCCHHHHHHHHHHcCccEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~ 60 (89)
+..|...++.|++|++||+...
T Consensus 57 ~~~~~~~D~~v~~a~~~gi~v~ 78 (302)
T 1nq6_A 57 SFSFSAADRIVSHAQSKGMKVR 78 (302)
T ss_dssp BCCCHHHHHHHHHHHHHTCEEE
T ss_pred cCCcHHHHHHHHHHHHCCCEEE
Confidence 5668889999999999999985
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=24.91 E-value=29 Score=19.01 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=15.9
Q ss_pred eeeecCCHHHHHHHHHHcCcc
Q psy627 38 LALNFSSKEDAIQYCQKNGWK 58 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~ 58 (89)
--+.|.+.|+|.+-.+.+|..
T Consensus 44 afV~f~~~~~a~~a~~~~~~~ 64 (75)
T 2mss_A 44 GFVTFESEDIVEKVCEIHFHE 64 (75)
T ss_dssp EEEECSCHHHHHHHHSSSCCC
T ss_pred EEEEECCHHHHHHHHHCCCCE
Confidence 468999999998876655543
No 138
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=24.86 E-value=63 Score=22.53 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=20.6
Q ss_pred eeeecCCHHHHHHHHHHcCccEEEec
Q psy627 38 LALNFSSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y~V~~ 63 (89)
+.|+ +.-.++|++|+++|+...|..
T Consensus 140 i~l~-~g~~e~i~~l~~~gi~v~ivS 164 (297)
T 4fe3_A 140 VMLK-EGYENFFGKLQQHGIPVFIFS 164 (297)
T ss_dssp CCBC-BTHHHHHHHHHHTTCCEEEEE
T ss_pred CCCC-CcHHHHHHHHHHcCCeEEEEe
Confidence 3444 678999999999999998865
No 139
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.83 E-value=57 Score=18.59 Aligned_cols=20 Identities=15% Similarity=0.249 Sum_probs=15.6
Q ss_pred eeecCCHHHHHHHHHH-cCcc
Q psy627 39 ALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~-~G~~ 58 (89)
-+.|.+.++|.+-.+. +|..
T Consensus 48 fV~f~~~~~a~~A~~~l~g~~ 68 (92)
T 2dgt_A 48 FVHMERAEDAVEAIRGLDNTE 68 (92)
T ss_dssp EEEESCHHHHHHHHHHHTTEE
T ss_pred EEEECCHHHHHHHHHHhCCCe
Confidence 4789999999988765 6654
No 140
>2b9s_B DNA topoisomerase I-like protein; vanadate complex, isomerase/DNA complex; HET: DNA; 2.27A {Leishmania donovani}
Probab=24.79 E-value=34 Score=20.54 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=15.1
Q ss_pred eecCCHHHHHHHHHHcCccEE
Q psy627 40 LNFSSKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 40 l~F~s~e~Aiayae~~G~~Y~ 60 (89)
|..-..-=.||+|++++++.+
T Consensus 20 iNYlDPRItvaWcKr~~VPie 40 (62)
T 2b9s_B 20 INYIDPRIICSWAKAQDVPIN 40 (62)
T ss_dssp HHTSCHHHHHHHHHHTTCCGG
T ss_pred hhccCchhhhhhhhhcCCCHH
Confidence 334455668999999998744
No 141
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN; 1.94A {Fusarium oxysporum}
Probab=24.70 E-value=24 Score=26.48 Aligned_cols=23 Identities=9% Similarity=0.303 Sum_probs=19.9
Q ss_pred eeecCCHHHHHHHHHHcCccEEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
+..|...+..|+||++||+...-
T Consensus 59 ~~~f~~~D~~v~~a~~~gi~vrG 81 (327)
T 3u7b_A 59 QFNWGPADQHAAAATSRGYELRC 81 (327)
T ss_dssp BCCCHHHHHHHHHHHTTTCEEEE
T ss_pred ccChHHHHHHHHHHHHCCCEEEE
Confidence 56788899999999999999753
No 142
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1
Probab=24.60 E-value=38 Score=21.83 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=18.4
Q ss_pred eeecCCHHHHHHHHHHcCccEEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
.--|.++++.++||++.--+.+|
T Consensus 33 ~~C~~~k~eIL~YCrkvYP~l~I 55 (96)
T 1mwp_A 33 KTCIDTKEGILQYCQEVYPELQI 55 (96)
T ss_dssp CBCCCSHHHHHHHHHHHSTTSCE
T ss_pred ccccCChHHHHHHHHHHCCCCcc
Confidence 45667999999999998766654
No 143
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=24.55 E-value=25 Score=27.43 Aligned_cols=16 Identities=13% Similarity=0.486 Sum_probs=13.9
Q ss_pred HHHHHHcCccEEEecc
Q psy627 49 IQYCQKNGWKFFVEEP 64 (89)
Q Consensus 49 iayae~~G~~Y~V~~p 64 (89)
..||+++||.++|.+-
T Consensus 136 ~r~ae~~g~k~ev~~~ 151 (360)
T 2b3t_B 136 SRYAEARRWRVEIMSA 151 (360)
T ss_dssp HHHHHHTTCCCCEEEE
T ss_pred HHHHHHcCCeEEEEec
Confidence 5799999999999873
No 144
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A*
Probab=24.51 E-value=24 Score=26.54 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=20.3
Q ss_pred eeecCCHHHHHHHHHHcCccEEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
+..|...+..|+||++||+....
T Consensus 57 ~~~f~~~D~~v~~a~~~gi~vrg 79 (331)
T 3emz_A 57 EYTFEAADEIVDFAVARGIGVRG 79 (331)
T ss_dssp BCCCHHHHHHHHHHHTTTCEEEE
T ss_pred ccChhHHHHHHHHHHHCCCEEee
Confidence 56788999999999999999765
No 145
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=24.49 E-value=17 Score=22.05 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=13.8
Q ss_pred eeecCCHHHHHHHHHHcCc
Q psy627 39 ALNFSSKEDAIQYCQKNGW 57 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~ 57 (89)
+|...|+.++|.+|.++||
T Consensus 71 Klgv~~r~~lv~~a~~~gl 89 (90)
T 3ulq_B 71 KLNVGSRTEAVLIAKSDGV 89 (90)
T ss_dssp HTTCSSHHHHHHHHTC---
T ss_pred HHCCCCHHHHHHHHHHcCC
Confidence 4667899999999999886
No 146
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=24.31 E-value=95 Score=18.51 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=16.4
Q ss_pred eeeecCCHHHHHHHHHHcC
Q psy627 38 LALNFSSKEDAIQYCQKNG 56 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G 56 (89)
--+.|.+.|+|.+-.+.+|
T Consensus 70 afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 70 GFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp EEEEESSHHHHHHHHHSSC
T ss_pred EEEEECCHHHHHHHHHHCC
Confidence 4688999999999988876
No 147
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=24.27 E-value=35 Score=21.50 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHcCccEEEec
Q psy627 44 SKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~ 63 (89)
+...|.++.+.+|++|++..
T Consensus 12 ~c~ka~~~L~~~gi~~~~~d 31 (120)
T 3l78_A 12 SCRKARAWLNRHDVVFQEHN 31 (120)
T ss_dssp HHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEe
Confidence 45689999999999998865
No 148
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=24.22 E-value=60 Score=19.54 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHHHcCccEEEecc
Q psy627 42 FSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 42 F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
.++.++..+|++++|++|.+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~d 93 (153)
T 2l5o_A 71 IDPIESVRQYVKDYGLPFTVMYD 93 (153)
T ss_dssp TSCHHHHHHHHHHTTCCSEEEEC
T ss_pred CCCHHHHHHHHHHcCCCceEEcC
Confidence 57899999999999999988654
No 149
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.16 E-value=51 Score=19.01 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=17.0
Q ss_pred eeeecCCHHHHHHHHHHcCcc
Q psy627 38 LALNFSSKEDAIQYCQKNGWK 58 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~ 58 (89)
--+.|.+.|+|.+-.+.+|..
T Consensus 55 afV~f~~~~~a~~A~~~~~~~ 75 (99)
T 2dgs_A 55 GFITFEDEQSVDQAVNMHFHD 75 (99)
T ss_dssp EEEEESSHHHHHHHHHHCCCB
T ss_pred EEEEECCHHHHHHHHHhCCCE
Confidence 458999999999888777654
No 150
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=23.91 E-value=79 Score=20.82 Aligned_cols=37 Identities=5% Similarity=-0.161 Sum_probs=27.0
Q ss_pred eecCCHHHHHHHHHHcCcc--EEEeccCCCCCCccccccc
Q psy627 40 LNFSSKEDAIQYCQKNGWK--FFVEEPKWKTPKVKSYAFN 77 (89)
Q Consensus 40 l~F~s~e~Aiayae~~G~~--Y~V~~p~~~~~~~ksYadN 77 (89)
++-++.+.+-+|++++|++ |.+...... ...+.||-.
T Consensus 85 iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~-~va~~yGv~ 123 (173)
T 3mng_A 85 LSVNDAFVTGEWGRAHKAEGKVRLLADPTG-AFGKETDLL 123 (173)
T ss_dssp EESSCHHHHHHHHHHTTCTTTCEEEECTTC-HHHHHHTCB
T ss_pred EcCCCHHHHHHHHHHhCCCCceEEEECCCh-HHHHHhCCC
Confidence 7889999999999999998 888765322 233455543
No 151
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase, hemicellulose, xylan degradation; HET: XYS AHR; 1.43A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A* 1ur2_A* 2cnc_A*
Probab=23.85 E-value=29 Score=26.50 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=20.2
Q ss_pred eeecCCHHHHHHHHHHcCccEEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
+..|...+..|+||++||+....
T Consensus 81 ~~~f~~~D~~v~~a~~~gi~vrg 103 (378)
T 1ur1_A 81 QWNWKDADAFVAFGTKHNLHMVG 103 (378)
T ss_dssp CBCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccCchHHHHHHHHHHHCCCEEEe
Confidence 56789999999999999999753
No 152
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=23.81 E-value=31 Score=27.13 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=15.0
Q ss_pred cCCHHHHHHHHHHcCccEE
Q psy627 42 FSSKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 42 F~s~e~Aiayae~~G~~Y~ 60 (89)
|-||++-++||+++|+++.
T Consensus 164 ~lsK~Eir~~A~e~Glp~~ 182 (421)
T 1vl2_A 164 FKGRTDLINYAMEKGIPIK 182 (421)
T ss_dssp TC--CHHHHHHHHHTCCCC
T ss_pred cCCHHHHHHHHHHcCCCcc
Confidence 3699999999999999874
No 153
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=23.74 E-value=33 Score=21.77 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHcCccEEEec
Q psy627 44 SKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~ 63 (89)
+.-.|.++.+.+|++|++..
T Consensus 15 ~c~ka~~~L~~~gi~~~~~d 34 (120)
T 3fz4_A 15 TCRRAKAELDDLAWDYDAID 34 (120)
T ss_dssp HHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHcCCceEEEE
Confidence 45789999999999998764
No 154
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=23.51 E-value=17 Score=23.47 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=17.9
Q ss_pred eeeecCCHHHHHHHHHHcCc-cEEEecc
Q psy627 38 LALNFSSKEDAIQYCQKNGW-KFFVEEP 64 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~-~Y~V~~p 64 (89)
|.+..++.+++.+|++++|+ .|.+...
T Consensus 79 v~Is~D~~~~~~~~~~~~~~~~~~~l~D 106 (175)
T 1xvq_A 79 LCVSKDLPFAQKRFCGAEGTENVMPASA 106 (175)
T ss_dssp EEEESSCHHHHTTCC------CEEEEEC
T ss_pred EEEECCCHHHHHHHHHHcCCCCceEeeC
Confidence 46788999999999999999 7877654
No 155
>1ecs_A Bleomycin resistance protein; arm-exchange, antibiotic inhibitor; HET: PG4; 1.70A {Klebsiella pneumoniae} SCOP: d.32.1.2 PDB: 1ewj_A* 1niq_B* 1mh6_A
Probab=23.46 E-value=94 Score=18.24 Aligned_cols=24 Identities=13% Similarity=0.211 Sum_probs=20.6
Q ss_pred CceeeecCCHHHHHHHHHHcCccE
Q psy627 36 SNLALNFSSKEDAIQYCQKNGWKF 59 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiayae~~G~~Y 59 (89)
..+.+..++.+++.+.++++|+.+
T Consensus 60 ~~~~~~v~dv~~~~~~l~~~G~~~ 83 (126)
T 1ecs_A 60 FSCCLRLDDLAEFYRQCKSVGIQE 83 (126)
T ss_dssp CEEEEEESCHHHHHHHHHHTTCCB
T ss_pred eEEEEEECCHHHHHHHHHHCCCcc
Confidence 346677789999999999999986
No 156
>1ta3_A XIP-1, xylanase inhibitor protein I; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Triticum aestivum} SCOP: c.1.8.5 PDB: 1om0_A* 1te1_A*
Probab=23.40 E-value=44 Score=24.44 Aligned_cols=31 Identities=19% Similarity=0.426 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCceeeecCCHHHHHHHHHH----------------------cCccEEEecc
Q psy627 26 MGWCSTGDPLSNLALNFSSKEDAIQYCQK----------------------NGWKFFVEEP 64 (89)
Q Consensus 26 MGWtss~D~~~qv~l~F~s~e~Aiayae~----------------------~G~~Y~V~~p 64 (89)
-||+++ ..|+|.++|.+||+- .||++.++.|
T Consensus 78 GG~~gs--------~~l~s~~~a~~fa~~l~~~f~~g~~~~~~r~~g~~~lDGiDiD~E~~ 130 (274)
T 1ta3_A 78 GGYGTG--------YSLPSNRSALDLFDHLWNSYFGGSKPSVPRPFGDAWLDGVDLFLEHG 130 (274)
T ss_dssp EESSSC--------BCCCSHHHHHHHHHHHHHHHSSCCCTTSCCTTTTCCCSEEEEEESSC
T ss_pred CCCcCc--------cccCCHHHHHHHHHHHHHHhcCcccccccccHhhcCcCeEEEeccCC
Confidence 477654 348999999999873 4678888887
No 157
>2anu_A Hypothetical protein TM0559; predicted metal-dependent phosphoesterase (PHP famil structural genomics, joint center for structural genomics; 2.40A {Thermotoga maritima} SCOP: c.6.3.1
Probab=23.37 E-value=54 Score=22.73 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHcCccEEEeccCC
Q psy627 43 SSKEDAIQYCQKNGWKFFVEEPKW 66 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~p~~ 66 (89)
.|.|+.|+.|++.|+++.+..++.
T Consensus 35 ~t~ee~v~~A~~~Gl~~i~iTDH~ 58 (255)
T 2anu_A 35 LPLGEVVDLFGKHGVDVVSITDHI 58 (255)
T ss_dssp SCHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCCEEEEcCCC
Confidence 578999999999999999988874
No 158
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=23.27 E-value=61 Score=17.85 Aligned_cols=18 Identities=22% Similarity=0.621 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHcCccEE
Q psy627 43 SSKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~ 60 (89)
+..+.|+.|-+.++|+++
T Consensus 19 ~d~~~A~~~Lea~nWDLe 36 (45)
T 3e21_A 19 ENIDEAITLLEQNNWDLV 36 (45)
T ss_dssp CCHHHHHHHHHHTTTCHH
T ss_pred CCHHHHHHHHHHcCCcHH
Confidence 346999999999999864
No 159
>1vki_A Hypothetical protein ATU3699; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.60A {Agrobacterium tumefaciens str} SCOP: d.116.1.1
Probab=23.21 E-value=53 Score=22.15 Aligned_cols=21 Identities=5% Similarity=0.180 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHcCccEEEec
Q psy627 43 SSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~ 63 (89)
.+.+.+.+|-+++||+|++.+
T Consensus 19 ~~~~~~~~~L~~~~i~~~~~~ 39 (181)
T 1vki_A 19 KTATELFEFLDGLGISHTTKQ 39 (181)
T ss_dssp CCHHHHHHHHHHHTCCCEEEE
T ss_pred hHHHHHHHHHHHCCCCeEEEE
Confidence 578899999999999999865
No 160
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=23.15 E-value=66 Score=20.51 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHcCccEEEec
Q psy627 43 SSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~ 63 (89)
++.++..+|++++|++|.|..
T Consensus 97 ~~~~~~~~~~~~~~~~~p~~~ 117 (183)
T 2obi_A 97 GSNEEIKEFAAGYNVKFDMFS 117 (183)
T ss_dssp SCHHHHHHHHHTTTCCSEEBC
T ss_pred CCHHHHHHHHHHcCCCceEEe
Confidence 378999999999999999874
No 161
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=23.14 E-value=71 Score=17.64 Aligned_cols=21 Identities=24% Similarity=0.207 Sum_probs=16.3
Q ss_pred eeeecCCHHHHHHHHHH-cCcc
Q psy627 38 LALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~ 58 (89)
.-+.|.+.|+|.+-.+. +|..
T Consensus 52 afV~f~~~~~a~~A~~~l~g~~ 73 (85)
T 3mdf_A 52 AFVEFELAEDAAAAIDNMNESE 73 (85)
T ss_dssp EEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEECCHHHHHHHHHHhCCCE
Confidence 46899999999988754 6654
No 162
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.12 E-value=36 Score=20.88 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=15.5
Q ss_pred HHHHHHHHcCccEEEec
Q psy627 47 DAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 47 ~Aiayae~~G~~Y~V~~ 63 (89)
.|.++.+.+|++|++..
T Consensus 29 ~ak~~L~~~gi~y~~vd 45 (111)
T 2ct6_A 29 DVVRFLEANKIEFEEVD 45 (111)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHcCCCEEEEE
Confidence 79999999999998765
No 163
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=23.07 E-value=63 Score=20.42 Aligned_cols=26 Identities=15% Similarity=0.265 Sum_probs=21.0
Q ss_pred eeecCC--HHHHHHHHHHcCccEEEecc
Q psy627 39 ALNFSS--KEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 39 ~l~F~s--~e~Aiayae~~G~~Y~V~~p 64 (89)
.+..+. .+.+.+|++++|++|.+...
T Consensus 103 ~v~~d~~~~~~~~~~~~~~~~~~~~~~d 130 (183)
T 3lwa_A 103 GINVRDYSRDIAQDFVTDNGLDYPSIYD 130 (183)
T ss_dssp EEECSCCCHHHHHHHHHHTTCCSCEEEC
T ss_pred EEECCCCCHHHHHHHHHHcCCCccEEEC
Confidence 455555 99999999999999988654
No 164
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=23.02 E-value=53 Score=21.14 Aligned_cols=20 Identities=20% Similarity=0.208 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHcCccEEEec
Q psy627 44 SKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~ 63 (89)
+.+++.+|++++|+.|.|..
T Consensus 100 ~~~~~~~~~~~~~~~~p~~~ 119 (185)
T 2gs3_A 100 SNEEIKEFAAGYNVKFDMFS 119 (185)
T ss_dssp CHHHHHHHHHHTTCCSEEBC
T ss_pred CHHHHHHHHHHcCCCCeeee
Confidence 68899999999999998874
No 165
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemica hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A
Probab=22.96 E-value=33 Score=26.05 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=20.5
Q ss_pred eeecCCHHHHHHHHHHcCccEEEe
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFFVE 62 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~V~ 62 (89)
+..|...++.|++|++||+.....
T Consensus 58 ~~~f~~~D~~~~~a~~~gi~v~gh 81 (436)
T 2d1z_A 58 QFNFSAGDRVYNWAVQNGKQVRGH 81 (436)
T ss_dssp BCCCHHHHHHHHHHHHTTCEEEEE
T ss_pred ccChHHHHHHHHHHHHCCCEEEEE
Confidence 567889999999999999997543
No 166
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.96 E-value=58 Score=18.92 Aligned_cols=22 Identities=27% Similarity=0.067 Sum_probs=17.2
Q ss_pred ceeeecCCHHHHHHHHHH-cCcc
Q psy627 37 NLALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 37 qv~l~F~s~e~Aiayae~-~G~~ 58 (89)
-.-+.|.+.|+|.+-.+. +|..
T Consensus 59 ~afV~f~~~~~a~~A~~~l~g~~ 81 (105)
T 1x5u_A 59 YGFVEFLSEEDADYAIKIMDMIK 81 (105)
T ss_dssp CEEEEESSHHHHHHHHHHSSSCB
T ss_pred EEEEEECCHHHHHHHHHHhCCCe
Confidence 356899999999998886 5543
No 167
>1us0_A Aldose reductase; oxidoreductase, NADP, IDD594; HET: NDP LDT CIT; 0.66A {Homo sapiens} SCOP: c.1.7.1 PDB: 1pwl_A* 1t41_A* 1pwm_A* 1x96_A* 1x97_A* 1x98_A* 1z89_A* 1z8a_A* 2dux_A* 2duz_A* 2dv0_A* 2fz8_A* 2fz9_A* 2fzb_A* 2fzd_A* 2hv5_A* 2hvn_A* 2hvo_A* 2i16_A* 2i17_A* ...
Probab=22.90 E-value=53 Score=23.67 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCccEEEeccCCC
Q psy627 45 KEDAIQYCQKNGWKFFVEEPKWK 67 (89)
Q Consensus 45 ~e~Aiayae~~G~~Y~V~~p~~~ 67 (89)
.++-+.||+++||.+..-.|-..
T Consensus 193 ~~~l~~~~~~~gI~v~a~spL~~ 215 (316)
T 1us0_A 193 QEKLIQYCQSKGIVVTAYSPLGS 215 (316)
T ss_dssp CHHHHHHHHHTTCEEEEESTTCC
T ss_pred CHHHHHHHHHcCCEEEEeccccc
Confidence 36799999999999999888654
No 168
>3l7t_A SMU.1112C, putative uncharacterized protein; metal binding protein; 1.80A {Streptococcus mutans}
Probab=22.83 E-value=1.1e+02 Score=17.30 Aligned_cols=25 Identities=24% Similarity=0.187 Sum_probs=21.6
Q ss_pred CCceeeecCCHHHHHHHHHHcCccE
Q psy627 35 LSNLALNFSSKEDAIQYCQKNGWKF 59 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~~G~~Y 59 (89)
...+.+..++.+++++.++++|+..
T Consensus 82 ~~~~~~~v~d~~~~~~~l~~~G~~~ 106 (134)
T 3l7t_A 82 LRHLAFYVEDVEASRQELIALGIRV 106 (134)
T ss_dssp EEEEEEECSCHHHHHHHHHHHTCCC
T ss_pred eEEEEEEECCHHHHHHHHHhCCCcc
Confidence 3457788899999999999999985
No 169
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei; transcription, gene regulation; 1.90A {Moorella thermoacetica} PDB: 2vy9_A 3ztb_A*
Probab=22.81 E-value=44 Score=20.99 Aligned_cols=16 Identities=0% Similarity=-0.049 Sum_probs=13.8
Q ss_pred ecCCHHHHHHHHHHcC
Q psy627 41 NFSSKEDAIQYCQKNG 56 (89)
Q Consensus 41 ~F~s~e~Aiayae~~G 56 (89)
.|+|.++|++++.+++
T Consensus 103 ~~~~l~~Al~~l~~~~ 118 (123)
T 3zxn_A 103 TALNLQKGLDKLKNLA 118 (123)
T ss_dssp EESSHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHhh
Confidence 6899999999998753
No 170
>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A
Probab=22.76 E-value=43 Score=23.40 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=19.4
Q ss_pred CCceeeecCCHHHHHHHHHHcC
Q psy627 35 LSNLALNFSSKEDAIQYCQKNG 56 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~~G 56 (89)
.-+|-|-|.++++|++++++-|
T Consensus 7 ~livAlD~~~~~~a~~~~~~~~ 28 (221)
T 3exr_A 7 NLQVALDHSNLKGAITAAVSVG 28 (221)
T ss_dssp EEEEEECCSSHHHHHHHHHHHG
T ss_pred CEEEEeCCCCHHHHHHHHHhhC
Confidence 3468899999999999999977
No 171
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.76 E-value=65 Score=18.22 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=16.2
Q ss_pred eeeecCCHHHHHHHHHH-cCcc
Q psy627 38 LALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~ 58 (89)
.-+.|.+.|+|.+-.+. +|..
T Consensus 60 afV~f~~~~~A~~A~~~l~g~~ 81 (95)
T 2cqc_A 60 AFVYFENVDDAKEAKERANGME 81 (95)
T ss_dssp EEEEESSHHHHHHHHHHHTTEE
T ss_pred EEEEECCHHHHHHHHHHhCCCE
Confidence 35899999999988775 6643
No 172
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase, structural genomics, structural genomics CONS SGC, oxidoreductase; 2.25A {Homo sapiens}
Probab=22.73 E-value=47 Score=25.75 Aligned_cols=19 Identities=26% Similarity=0.190 Sum_probs=17.4
Q ss_pred eeecCCHHHHHHHHHHcCc
Q psy627 39 ALNFSSKEDAIQYCQKNGW 57 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~ 57 (89)
.+.|++.||||++|...|.
T Consensus 343 v~~~~~~deAi~~aN~~~~ 361 (463)
T 2h5g_A 343 IEVVDNVQDAIDHIHKYGS 361 (463)
T ss_dssp EEEESSHHHHHHHHHHHCC
T ss_pred EEEeCCHHHHHHHHHcCCC
Confidence 5789999999999999887
No 173
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=22.72 E-value=76 Score=19.47 Aligned_cols=22 Identities=18% Similarity=0.042 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHcCccEEEecc
Q psy627 43 SSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~p 64 (89)
++.+..-+|++++|++|.+...
T Consensus 85 d~~~~~~~~~~~~~~~~~~l~d 106 (172)
T 2k6v_A 85 DPPEVADRYAKAFHPSFLGLSG 106 (172)
T ss_dssp CCHHHHHHHHHHHCTTEEEECC
T ss_pred CCHHHHHHHHHHhCCCcEEEeC
Confidence 3789999999999999988764
No 174
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=22.71 E-value=66 Score=24.22 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=20.8
Q ss_pred eecCCHHHHHHHHHHcCccEEEecc
Q psy627 40 LNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 40 l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
..|.+.++|.+|+++.|+++.|-..
T Consensus 126 ~~~~~~~ea~~~~~~~g~PvVvKp~ 150 (431)
T 3mjf_A 126 QNFTDVEAALAYVRQKGAPIVIKAD 150 (431)
T ss_dssp EEESCHHHHHHHHHHHCSSEEEEES
T ss_pred EeeCCHHHHHHHHHHcCCeEEEEEC
Confidence 4678999999999999999877543
No 175
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.71 E-value=39 Score=20.41 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=17.8
Q ss_pred ceeeecCCHHHHHHHHHHcCcc
Q psy627 37 NLALNFSSKEDAIQYCQKNGWK 58 (89)
Q Consensus 37 qv~l~F~s~e~Aiayae~~G~~ 58 (89)
---+.|.+.|+|.+-.+.+|..
T Consensus 59 ~afV~F~~~~~a~~Al~~~~~~ 80 (114)
T 2cpy_A 59 QALVQFKNEDDARKSERLHRKK 80 (114)
T ss_dssp CEEEECSSHHHHHHHGGGCSEE
T ss_pred EEEEEECCHHHHHHHHHhCCCc
Confidence 3468999999999988887754
No 176
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8
Probab=22.69 E-value=1.3e+02 Score=17.87 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=22.0
Q ss_pred CCceeeecCCH---HHHHHHHHHcCccEE
Q psy627 35 LSNLALNFSSK---EDAIQYCQKNGWKFF 60 (89)
Q Consensus 35 ~~qv~l~F~s~---e~Aiayae~~G~~Y~ 60 (89)
...+.+..++. +++++.++++|+...
T Consensus 78 ~~hi~~~v~d~~~l~~~~~~l~~~G~~~~ 106 (139)
T 1twu_A 78 DSLLVFYVPNAVELAAITSKLKHMGYQEV 106 (139)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCCEE
T ss_pred ccEEEEEeCCcchHHHHHHHHHHcCCcCc
Confidence 45678888999 999999999999854
No 177
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=22.64 E-value=83 Score=18.25 Aligned_cols=26 Identities=8% Similarity=0.055 Sum_probs=20.7
Q ss_pred eeecCC-HHHHHHHHHHcCccEEEecc
Q psy627 39 ALNFSS-KEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 39 ~l~F~s-~e~Aiayae~~G~~Y~V~~p 64 (89)
.+..++ .++..+|++++|+.|.+...
T Consensus 60 ~v~~~~~~~~~~~~~~~~~~~~~~~~d 86 (136)
T 1lu4_A 60 GIATRADVGAMQSFVSKYNLNFTNLND 86 (136)
T ss_dssp EEECSSCHHHHHHHHHHHTCCSEEEEC
T ss_pred EEEcCCCHHHHHHHHHHcCCCceEEEC
Confidence 455544 99999999999999987654
No 178
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.53 E-value=72 Score=18.48 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=16.5
Q ss_pred eeeecCCHHHHHHHHHH-cCcc
Q psy627 38 LALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~ 58 (89)
.-+.|.+.|+|.+-.+. +|..
T Consensus 58 afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cq3_A 58 GFVTFENSADADRAREKLHGTV 79 (103)
T ss_dssp EEEEESCHHHHHHHHHHHTTCE
T ss_pred EEEEECCHHHHHHHHHHhCCCE
Confidence 46889999999988875 6654
No 179
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=22.47 E-value=27 Score=25.95 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=24.6
Q ss_pred CceeeecCCHHHHHHHHHHcCccEEEecc
Q psy627 36 SNLALNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
.+|.+-+.++++|-.+|+++||++.+..+
T Consensus 123 ~~i~~Visn~~~~~~~A~~~gIp~~~~~~ 151 (292)
T 3lou_A 123 MDIVGIVSNHPDFAPLAAQHGLPFRHFPI 151 (292)
T ss_dssp CEEEEEEESSSTTHHHHHHTTCCEEECCC
T ss_pred cEEEEEEeCcHHHHHHHHHcCCCEEEeCC
Confidence 46788888999999999999999987643
No 180
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=22.47 E-value=71 Score=18.83 Aligned_cols=21 Identities=0% Similarity=-0.190 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHcCccEEEecc
Q psy627 44 SKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~p 64 (89)
+.++..+|++++|++|.+...
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~d 97 (148)
T 2b5x_A 77 DPGKIKETAAEHDITQPIFVD 97 (148)
T ss_dssp SHHHHHHHHHHTTCCSCEEEC
T ss_pred CHHHHHHHHHHcCCCcceEEC
Confidence 799999999999999877543
No 181
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=22.45 E-value=73 Score=22.30 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHcCccEEEec
Q psy627 44 SKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~ 63 (89)
..+++|+.|.++|+-..|.-
T Consensus 66 ~ld~~v~~a~~~Gi~Vild~ 85 (302)
T 1bqc_A 66 DVANVISLCKQNRLICMLEV 85 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEe
Confidence 47999999999999766543
No 182
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=22.43 E-value=33 Score=21.80 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHcCccEEEec
Q psy627 44 SKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~ 63 (89)
+...|.++.+.+|++|++..
T Consensus 16 ~c~ka~~~L~~~gi~~~~~d 35 (120)
T 3gkx_A 16 TCQKAKKWLIENNIEYTNRL 35 (120)
T ss_dssp HHHHHHHHHHHTTCCCEEEE
T ss_pred HHHHHHHHHHHcCCceEEEe
Confidence 45789999999999999764
No 183
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=22.40 E-value=65 Score=18.16 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=16.4
Q ss_pred eeeecCCHHHHHHHHHH-cCcc
Q psy627 38 LALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~ 58 (89)
.-+.|.+.++|.+-.+. +|..
T Consensus 51 afV~f~~~~~a~~a~~~l~g~~ 72 (92)
T 2dgv_A 51 GVVKFESPEVAERACRMMNGMK 72 (92)
T ss_dssp EEEEESSHHHHHHHHHHHTTCC
T ss_pred EEEEECCHHHHHHHHHHhCCCE
Confidence 35789999999988775 6654
No 184
>2gsj_A Protein PPL-2; mimosoideae, chimerolectin, endochitinase, glycosyl hydrolase family 18, equilibrium sedimentation, X-RAY; 1.73A {Parkia platycephala}
Probab=22.33 E-value=56 Score=23.63 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCceeeecCCHHHHHHHHHH--------------------cCccEEEeccC
Q psy627 25 LMGWCSTGDPLSNLALNFSSKEDAIQYCQK--------------------NGWKFFVEEPK 65 (89)
Q Consensus 25 LMGWtss~D~~~qv~l~F~s~e~Aiayae~--------------------~G~~Y~V~~p~ 65 (89)
+-||+++ . .|.|.++|.+||+- .||++.++.|.
T Consensus 78 iGG~~gs---~-----~~~s~~~~~~fa~s~~~~f~~~~s~~~~~~~~~~DGiDiDwE~p~ 130 (271)
T 2gsj_A 78 IGGGAGS---Y-----SLSSVQDARSVADYIWNNFLGGRSSSRPLGDAVLDGVDFDIEHGG 130 (271)
T ss_dssp EECSSSC---B-----CCCSHHHHHHHHHHHHHHHSSSCCTTCTTCSCCCSEEEEECCSCC
T ss_pred eCCCCCc---e-----ecCCHHHHHHHHHHHHHHhcCCcchhhhHHHcCCceEEEeecCch
Confidence 4588754 2 37899999999976 46777887774
No 185
>2v6u_A Pterin-4A-carbinolamine dehydratase; lyase, enzyme; 1.6A {Toxoplasma gondii} PDB: 2v6s_A 2v6t_A*
Probab=22.26 E-value=54 Score=20.63 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=25.3
Q ss_pred CCCCCCCCCCCCC-CceeeecCCHHHHHHHHHHcC
Q psy627 23 NPLMGWCSTGDPL-SNLALNFSSKEDAIQYCQKNG 56 (89)
Q Consensus 23 dPLMGWtss~D~~-~qv~l~F~s~e~Aiayae~~G 56 (89)
..|-||.-..|+. -.-...|.+-.+|++|..+-+
T Consensus 19 ~~l~gW~~~~~~~~i~r~f~F~~f~~a~~F~~~Va 53 (104)
T 2v6u_A 19 KTVPQWHLTDGHLSIKRKFQFSDFNEAWGFMSRVA 53 (104)
T ss_dssp TTSTTSEECGGGCCEEEEEECSSHHHHHHHHHHHH
T ss_pred hcCCCCeEeCCcCeEEEEEEeCCHHHHHHHHHHHH
Confidence 5688999887763 234689999999999876543
No 186
>3buv_A 3-OXO-5-beta-steroid 4-dehydrogenase; 5-beta-reductase, catalytic tetrad, hepes, NADP, bIle catabolism, disease mutation, lipid metabolism; HET: NAP EPE; 1.35A {Homo sapiens} PDB: 3bur_A* 3bv7_A* 3caq_A* 3cas_A* 3cav_A* 3g1r_A* 3cot_A* 3dop_A* 3cmf_A* 3uzx_A* 3uzw_A* 3uzy_A* 3uzz_A*
Probab=22.25 E-value=55 Score=23.73 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCccEEEeccCCCC
Q psy627 45 KEDAIQYCQKNGWKFFVEEPKWKT 68 (89)
Q Consensus 45 ~e~Aiayae~~G~~Y~V~~p~~~~ 68 (89)
.++-+.||+++||.+..-.|-...
T Consensus 202 ~~~l~~~~~~~gI~v~a~spL~~G 225 (326)
T 3buv_A 202 QPKLLKFCQQHDIVITAYSPLGTS 225 (326)
T ss_dssp CHHHHHHHHHTTCEEEEESTTCCC
T ss_pred cHHHHHHHHHcCCEEEEeccccCC
Confidence 367999999999999998886543
No 187
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=22.22 E-value=40 Score=22.20 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=17.4
Q ss_pred eeecCCHHHHHHHHHHcCcc
Q psy627 39 ALNFSSKEDAIQYCQKNGWK 58 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~ 58 (89)
+|...++.++|.||.++|+-
T Consensus 201 KL~~~~~~~l~~~a~~~~~~ 220 (225)
T 3klo_A 201 KINAKNRLQALIWAKNNIGI 220 (225)
T ss_dssp TSCCSSHHHHHHHHHHHCCC
T ss_pred HhCCCCHHHHHHHHHHhccc
Confidence 57788999999999999874
No 188
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.17 E-value=1e+02 Score=18.46 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=20.1
Q ss_pred eeeecCCHHHHHHHHHH----cCccEEEec
Q psy627 38 LALNFSSKEDAIQYCQK----NGWKFFVEE 63 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~----~G~~Y~V~~ 63 (89)
--+.|.+.|+|.+-.+. +|-.+.|..
T Consensus 55 aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~ 84 (114)
T 2dnl_A 55 AFLLFQEESSVQALIDACLEEDGKLYLCVS 84 (114)
T ss_dssp EEECCSSHHHHHHHHHHSEEETTEEEEEEC
T ss_pred EEEEECCHHHHHHHHHhhhhcCCcEEEecc
Confidence 45899999999887776 677776654
No 189
>1afs_A 3-alpha-HSD, 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, NAD; HET: NAP TES; 2.50A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 1lwi_A*
Probab=22.16 E-value=51 Score=23.87 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCccEEEeccCCCC
Q psy627 45 KEDAIQYCQKNGWKFFVEEPKWKT 68 (89)
Q Consensus 45 ~e~Aiayae~~G~~Y~V~~p~~~~ 68 (89)
.++-+.||+++||.+..-.|-...
T Consensus 199 ~~~l~~~~~~~gI~v~a~spL~~G 222 (323)
T 1afs_A 199 QSKMLDYCKSKDIILVSYCTLGSS 222 (323)
T ss_dssp CHHHHHHHHHHTCEEEEESTTSCC
T ss_pred hHHHHHHHHHcCCEEEEecCccCC
Confidence 367999999999999998886543
No 190
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=22.15 E-value=75 Score=18.34 Aligned_cols=20 Identities=10% Similarity=0.222 Sum_probs=15.4
Q ss_pred eeecCCHHHHHHHHHH-cCcc
Q psy627 39 ALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~-~G~~ 58 (89)
-+.|.+.++|..-.+. +|..
T Consensus 67 fV~f~~~~~A~~Ai~~l~g~~ 87 (101)
T 2la4_A 67 FIKYDTHEQAAVCIVALANFP 87 (101)
T ss_dssp EEECSSHHHHHHHHHHHTTCE
T ss_pred EEEECCHHHHHHHHHHhCCCe
Confidence 4789999999887765 6654
No 191
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.12 E-value=75 Score=18.31 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=16.3
Q ss_pred eeeecCCHHHHHHHHHH-cCcc
Q psy627 38 LALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~ 58 (89)
--+.|.+.|+|.+-.+. +|..
T Consensus 57 afV~f~~~~~A~~A~~~l~g~~ 78 (102)
T 2fc8_A 57 GFVDFNSEEDAKAAKEAMEDGE 78 (102)
T ss_dssp EEEECSSHHHHHHHHHHHTTCE
T ss_pred EEEEECCHHHHHHHHHHhCCCe
Confidence 35889999999988774 6654
No 192
>1egg_A Macrophage mannose receptor; C-type lectin, sugar binding protein; 2.30A {Homo sapiens} SCOP: d.169.1.1 PDB: 1egi_A
Probab=22.07 E-value=53 Score=19.97 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHcCccEEE
Q psy627 43 SSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V 61 (89)
.|-++|..+|+.+|-...+
T Consensus 30 ~~w~~A~~~C~~~g~~La~ 48 (147)
T 1egg_A 30 KTWFESRDFCRALGGDLAS 48 (147)
T ss_dssp BCHHHHHHHHHTTTCEECC
T ss_pred cCHHHHHHHHHHcCCEECc
Confidence 4678999999998755433
No 193
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=22.04 E-value=61 Score=20.06 Aligned_cols=27 Identities=4% Similarity=0.100 Sum_probs=20.6
Q ss_pred eeeecC----CHHHHHHHHHHcCccE---EEecc
Q psy627 38 LALNFS----SKEDAIQYCQKNGWKF---FVEEP 64 (89)
Q Consensus 38 v~l~F~----s~e~Aiayae~~G~~Y---~V~~p 64 (89)
|.+..+ +.++..+|++++|+.| .+...
T Consensus 73 v~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d 106 (174)
T 1xzo_A 73 ISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTG 106 (174)
T ss_dssp EEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBC
T ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeC
Confidence 345554 8899999999999998 66543
No 194
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=22.01 E-value=53 Score=20.89 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHcCccEEEecc
Q psy627 43 SSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~p 64 (89)
++.++..+|++++|+.|.+...
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~d 103 (188)
T 2cvb_A 82 DAPEKMAAFAEEHGIFFPYLLD 103 (188)
T ss_dssp GSHHHHHHHHHHHTCCSCEEEC
T ss_pred cCHHHHHHHHHHhCCCceEEEC
Confidence 6899999999999999877654
No 195
>2afp_A Protein (SEA raven type II antifreeze protein); recombinant SEA raven protein, solution backbone fold, C- type lectin; NMR {Hemitripterus americanus} SCOP: d.169.1.1
Probab=22.00 E-value=67 Score=19.15 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCceeeecCCHHHHHHHHHHcCccEEE
Q psy627 26 MGWCSTGDPLSNLALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 26 MGWtss~D~~~qv~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
.||+.-.+--=.+...-.|-++|..+|+.+|=...+
T Consensus 9 ~gw~~~~~~CY~~~~~~~~w~~A~~~C~~~g~~La~ 44 (129)
T 2afp_A 9 AGWQPLGDRCIYYETTAMTWALAETNCMKLGGHLAS 44 (129)
T ss_dssp SSSCCCSSSEECCCCSCCCHHHHHHHHHHHSCEECC
T ss_pred cCcEEcCCEEEEEECCcCCHHHHHHHHHHcCCEECC
Confidence 477766543111111226789999999998855433
No 196
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=21.93 E-value=53 Score=20.90 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHcCccEEEecc
Q psy627 43 SSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~p 64 (89)
++.++..+|++++|+.|.+...
T Consensus 96 d~~~~~~~~~~~~~~~~~~~~d 117 (196)
T 2ywi_A 96 DSPENMKKVAEELGYPFPYLYD 117 (196)
T ss_dssp GSHHHHHHHHHHHTCCSCEEEC
T ss_pred cCHHHHHHHHHHcCCCceEEEC
Confidence 7899999999999999877654
No 197
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.93 E-value=65 Score=20.89 Aligned_cols=20 Identities=15% Similarity=0.175 Sum_probs=17.1
Q ss_pred CCceeeecCCHHHHHHHHHH
Q psy627 35 LSNLALNFSSKEDAIQYCQK 54 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~ 54 (89)
..++-|+|.|.|+|-.|.+.
T Consensus 99 ~~~~~lrfk~~e~a~~f~~~ 118 (125)
T 2ec1_A 99 PVTMLIRVKTSEDADELHKI 118 (125)
T ss_dssp CEEEEEECSSHHHHHHHHHH
T ss_pred eEEEEEEECCHHHHHHHHHH
Confidence 45789999999999999764
No 198
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=21.80 E-value=61 Score=21.02 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=16.8
Q ss_pred CCceeeecCCHHHHHHHHHH
Q psy627 35 LSNLALNFSSKEDAIQYCQK 54 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~ 54 (89)
..+.-|+|.|.|+|-.|.+.
T Consensus 94 ~~~~~irfks~e~a~~f~~~ 113 (130)
T 1xke_A 94 LEQLAAKFKTPELAEEFKQK 113 (130)
T ss_dssp EEEEEEECSSHHHHHHHHHH
T ss_pred eEEEEEEECCHHHHHHHHHH
Confidence 45679999999999998764
No 199
>4a56_A PULS, pullulanase secretion protein PULS; protein transport, T2SS; 1.24A {Klebsiella oxytoca}
Probab=21.78 E-value=39 Score=21.53 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=11.9
Q ss_pred HHHHHHHHcCccE
Q psy627 47 DAIQYCQKNGWKF 59 (89)
Q Consensus 47 ~Aiayae~~G~~Y 59 (89)
.||.+|..+||+-
T Consensus 38 ~a~~~A~~~~Wd~ 50 (93)
T 4a56_A 38 AAINVGKKRGWAN 50 (93)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHcCCCh
Confidence 7999999999985
No 200
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.75 E-value=40 Score=19.73 Aligned_cols=21 Identities=5% Similarity=-0.031 Sum_probs=16.8
Q ss_pred eeecCCHHHHHHHHHHcCccE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKF 59 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y 59 (89)
-+.|.+.++|.+-.+.+|..+
T Consensus 62 fV~f~~~~~a~~a~~~~~~~~ 82 (105)
T 2dh8_A 62 FVKFKDPNCVGTVLASRPHTL 82 (105)
T ss_dssp EEEESSTTHHHHHHHHCSEEE
T ss_pred EEEECCHHHHHHHHHhCCCeE
Confidence 488999999998888776543
No 201
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=21.70 E-value=76 Score=18.14 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=16.6
Q ss_pred eeeecCCHHHHHHHHHH-cCcc
Q psy627 38 LALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~-~G~~ 58 (89)
.-+.|.+.++|.+-.+. +|..
T Consensus 53 afV~f~~~~~a~~A~~~l~g~~ 74 (98)
T 2cpf_A 53 GFVEYKKPEQAQKALKQLQGHT 74 (98)
T ss_dssp EEEEESSHHHHHHHHHHSTTCE
T ss_pred EEEEECCHHHHHHHHHHhCCCe
Confidence 35889999999988886 6653
No 202
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=21.60 E-value=56 Score=21.99 Aligned_cols=23 Identities=9% Similarity=-0.172 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHcCccEEEeccCC
Q psy627 44 SKEDAIQYCQKNGWKFFVEEPKW 66 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~p~~ 66 (89)
+.+-+.++|++.|++++|..+..
T Consensus 85 ~~~~v~~~~~~~gi~~~v~~~~~ 107 (215)
T 1sur_A 85 TYRFIDELTDKLKLNLKVYRATE 107 (215)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSS
T ss_pred HHHHHHHHHHHhCCcEEEEeCCC
Confidence 34567778899999999988753
No 203
>2xwp_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; HET: SIR; 1.90A {Salmonella enterica} PDB: 1qgo_A*
Probab=21.49 E-value=96 Score=21.85 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHcCccEEEeccC
Q psy627 43 SSKEDAIQYCQKNGWKFFVEEPK 65 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~p~ 65 (89)
+|.++|++-+...|+.=.|..|-
T Consensus 60 psi~~aL~~l~~~G~~~vvV~Pl 82 (264)
T 2xwp_A 60 DTPLQALQKLAAQGYQDVAIQSL 82 (264)
T ss_dssp CCHHHHHHHHHHHTCCEEEEEEC
T ss_pred CCHHHHHHHHHhCCCCEEEEEeC
Confidence 89999999999999988777774
No 204
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=21.43 E-value=36 Score=17.79 Aligned_cols=17 Identities=18% Similarity=0.530 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHcCccEE
Q psy627 44 SKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~ 60 (89)
+.+.|+.|-+.++|+.+
T Consensus 19 ~~~~A~~~L~~~~wdle 35 (46)
T 1v92_A 19 EEDRARFFLESAGWDLQ 35 (46)
T ss_dssp CHHHHHHHHHHTTSCSH
T ss_pred CHHHHHHHHHHcCCCHH
Confidence 68999999999999864
No 205
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=21.37 E-value=28 Score=23.36 Aligned_cols=28 Identities=11% Similarity=0.214 Sum_probs=23.5
Q ss_pred eeeecCCHHHHHHHHHHcCc-cEEEeccC
Q psy627 38 LALNFSSKEDAIQYCQKNGW-KFFVEEPK 65 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~-~Y~V~~p~ 65 (89)
|.+..++.++..+||+++|+ .|.+....
T Consensus 114 v~Is~D~~~~~~~~~~~~~~~~f~~l~D~ 142 (200)
T 3zrd_A 114 LCISSDLPFAQSRFCGAEGLSNVITLSTL 142 (200)
T ss_dssp EEEESSCHHHHTTCTTTTTCTTEEEEETT
T ss_pred EEEECCCHHHHHHHHHHcCCCCceEEecC
Confidence 45788999999999999999 99887643
No 206
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=21.33 E-value=33 Score=18.68 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=17.4
Q ss_pred ceeeecCCHHHHHHHHHHcCcc
Q psy627 37 NLALNFSSKEDAIQYCQKNGWK 58 (89)
Q Consensus 37 qv~l~F~s~e~Aiayae~~G~~ 58 (89)
---+.|.+.++|.+-.+.+|..
T Consensus 43 ~afV~f~~~~~a~~Ai~~~~~~ 64 (75)
T 1iqt_A 43 FCFITFKEEEPVKKIMEKKYHN 64 (75)
T ss_dssp CEEEECSSSHHHHHHHTTSSCC
T ss_pred EEEEEECCHHHHHHHHHhCCCe
Confidence 3468999999999988876643
No 207
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=21.32 E-value=52 Score=25.23 Aligned_cols=20 Identities=15% Similarity=0.082 Sum_probs=16.9
Q ss_pred eeecCCHHHHHHHHHHcCcc
Q psy627 39 ALNFSSKEDAIQYCQKNGWK 58 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~ 58 (89)
-+.|++.||||++|...+..
T Consensus 347 v~~~~~~deAi~~aN~~~~g 366 (444)
T 4ghk_A 347 IKIVDGIDAAIEHINEYGSH 366 (444)
T ss_dssp EEEESSHHHHHHHHHHHSCS
T ss_pred EEEeCCHHHHHHHHHhCCCC
Confidence 57899999999999876543
No 208
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=21.29 E-value=82 Score=21.09 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHcCccEEEecc
Q psy627 43 SSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~p 64 (89)
...+.|++=-+++||+|.|++-
T Consensus 38 ~~~~~~~~rL~~~~I~Y~iq~v 59 (120)
T 2guk_A 38 DDIPYAEERLRSRQIPYFAQPT 59 (120)
T ss_dssp GGHHHHHHHHHHTTCCEEEECC
T ss_pred hhHHHHHHHHHhCCCCEEEEEc
Confidence 3456788888999999999884
No 209
>1mi3_A Xylose reductase, XR; aldo-keto reductase, beta-alpha barrel, dimer, oxidoreductase; HET: NAD; 1.80A {Candida tenuis} SCOP: c.1.7.1 PDB: 1jez_A* 1k8c_A* 1ye6_A* 1ye4_A* 1sm9_A* 1r38_A* 1z9a_A*
Probab=21.25 E-value=60 Score=23.46 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCccEEEeccCCC
Q psy627 45 KEDAIQYCQKNGWKFFVEEPKWK 67 (89)
Q Consensus 45 ~e~Aiayae~~G~~Y~V~~p~~~ 67 (89)
..+-+.||+++||.+..-.|-..
T Consensus 200 ~~~l~~~~~~~gi~v~a~spL~~ 222 (322)
T 1mi3_A 200 QPKLIEFAQKAGVTITAYSSFGP 222 (322)
T ss_dssp CHHHHHHHHHTTCEEEEECTTTT
T ss_pred cHHHHHHHHHcCCEEEEECCCCC
Confidence 36799999999999998888654
No 210
>2qbu_A Precorrin-2 methyltransferase; HET: SAH; 2.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=21.19 E-value=87 Score=21.15 Aligned_cols=30 Identities=23% Similarity=0.210 Sum_probs=23.2
Q ss_pred CCCCCCCceeeecCCHHHHHHHHHHcCccEEEecc
Q psy627 30 STGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 30 ss~D~~~qv~l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
++|||. -|++-..-++.|.++|++++|..-
T Consensus 101 ~~GDP~-----i~~~~~~l~~~~~~~gi~v~viPG 130 (232)
T 2qbu_A 101 TLGDPS-----IYSTFSYLQQRIEDMGFKTEMVPG 130 (232)
T ss_dssp ESBCTT-----BSCSHHHHHHHHHHTTCCEEEECC
T ss_pred eCCCCc-----cchhHHHHHHHHHHCCCcEEEeCC
Confidence 346663 477777788999999999999763
No 211
>1f9z_A Glyoxalase I; beta-alpha-beta-BETA-beta motif, protein-NI(II) complex, homodimer, lyase; 1.50A {Escherichia coli} SCOP: d.32.1.1 PDB: 1fa5_A 1fa6_A 1fa7_A 1fa8_A
Probab=21.16 E-value=1.1e+02 Score=17.69 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=21.6
Q ss_pred CceeeecCCHHHHHHHHHHcCccEEE
Q psy627 36 SNLALNFSSKEDAIQYCQKNGWKFFV 61 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiayae~~G~~Y~V 61 (89)
..+.+..++.+++++.++++|+....
T Consensus 73 ~~~~~~v~d~~~~~~~l~~~G~~~~~ 98 (135)
T 1f9z_A 73 GHIALSVDNAAEACEKIRQNGGNVTR 98 (135)
T ss_dssp EEEEEECSCHHHHHHHHHHTTCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHCCCEEec
Confidence 34677889999999999999998643
No 212
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=21.15 E-value=57 Score=18.90 Aligned_cols=22 Identities=27% Similarity=0.273 Sum_probs=17.3
Q ss_pred eeeecCCHHHHHHHHHHcCccE
Q psy627 38 LALNFSSKEDAIQYCQKNGWKF 59 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~~G~~Y 59 (89)
--+.|.+.|+|.+-.+-+|..+
T Consensus 61 afV~f~~~~~a~~A~~l~g~~~ 82 (101)
T 1fj7_A 61 GYVDFESAEDLEKALELTGLKV 82 (101)
T ss_dssp EEEEESSHHHHHHHHHGGGCCB
T ss_pred EEEEECCHHHHHHHHhcCCcEE
Confidence 3588999999999888776553
No 213
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=21.12 E-value=1.2e+02 Score=17.03 Aligned_cols=21 Identities=10% Similarity=-0.056 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHcCccEEEecc
Q psy627 44 SKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 44 s~e~Aiayae~~G~~Y~V~~p 64 (89)
....|.++.+++|++|++.+-
T Consensus 16 ~C~~ak~~L~~~gi~y~~idI 36 (87)
T 1aba_A 16 PCDNAKRLLTVKKQPFEFINI 36 (87)
T ss_dssp HHHHHHHHHHHTTCCEEEEES
T ss_pred cHHHHHHHHHHcCCCEEEEEe
Confidence 367899999999999987653
No 214
>3sza_A Aldehyde dehydrogenase, dimeric NADP-preferring; ALDH, rossmann fold, oxidoreductase; 1.48A {Homo sapiens} SCOP: c.82.1.1 PDB: 3szb_A* 1ad3_A*
Probab=21.11 E-value=59 Score=25.19 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.4
Q ss_pred eeecCCHHHHHHHHHHcCc
Q psy627 39 ALNFSSKEDAIQYCQKNGW 57 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~ 57 (89)
.+.|+|.||||++|.....
T Consensus 358 v~~~~~~deAi~~aN~~~~ 376 (469)
T 3sza_A 358 IVCVRSLEEAIQFINQREK 376 (469)
T ss_dssp EEECSSHHHHHHHHHHSCC
T ss_pred EEecCCHHHHHHHHHcCCC
Confidence 5899999999999987643
No 215
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=21.10 E-value=1.3e+02 Score=18.09 Aligned_cols=35 Identities=14% Similarity=0.356 Sum_probs=23.6
Q ss_pred CCCCCCCCceeeecCCHHHHHHHHHHcCc---cEEEec
Q psy627 29 CSTGDPLSNLALNFSSKEDAIQYCQKNGW---KFFVEE 63 (89)
Q Consensus 29 tss~D~~~qv~l~F~s~e~Aiayae~~G~---~Y~V~~ 63 (89)
.+|.||..+-.-.-+-+-.=..||.++++ .|+++.
T Consensus 3 ~~~~~~~~~~~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~ 40 (89)
T 2cpn_A 3 SGSSGPVSPQQSECNPVGALQELVVQKGWRLPEYTVTQ 40 (89)
T ss_dssp CCCCCCCCCCCCCCCHHHHHHHHHHHHTCCCCEEEEEE
T ss_pred CCCCCCccCCCCCCCHHHHHHHHHHHcCCCCCeEEEEe
Confidence 46677765444344556666789999996 588754
No 216
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.02 E-value=78 Score=18.66 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=15.7
Q ss_pred eeecCCHHHHHHHHHH-cCcc
Q psy627 39 ALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~-~G~~ 58 (89)
-+.|.+.++|.+-.+. +|..
T Consensus 65 fV~f~~~~~a~~A~~~l~g~~ 85 (109)
T 1x4g_A 65 FVRFSTHESAAHAIVSVNGTT 85 (109)
T ss_dssp EEEESSHHHHHHHHHHHTTCE
T ss_pred EEEECCHHHHHHHHHHcCCCE
Confidence 4789999999988855 6654
No 217
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.93 E-value=71 Score=17.99 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=11.4
Q ss_pred eeeecCCHHHHHHH
Q psy627 38 LALNFSSKEDAIQY 51 (89)
Q Consensus 38 v~l~F~s~e~Aiay 51 (89)
--+.|.+.++|.+.
T Consensus 45 afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 45 AFVTFADDQIAQSL 58 (88)
T ss_dssp CEEECSCHHHHHHT
T ss_pred EEEEECCHHHHHHH
Confidence 46899999999764
No 218
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=20.92 E-value=56 Score=21.88 Aligned_cols=22 Identities=14% Similarity=0.074 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHcCccEEEecc
Q psy627 43 SSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~p 64 (89)
++.++..+|++++|+.|.+...
T Consensus 109 d~~~~~~~~~~~~~~~~~~l~D 130 (218)
T 3u5r_E 109 ETLERVGAEVKAYGYGFPYLKD 130 (218)
T ss_dssp GSHHHHHHHHHHHTCCSCEEEC
T ss_pred CCHHHHHHHHHHhCCCccEEEC
Confidence 7999999999999999988654
No 219
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.91 E-value=71 Score=17.70 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=15.5
Q ss_pred eeeecCCHHHHHHHHHH--cCc
Q psy627 38 LALNFSSKEDAIQYCQK--NGW 57 (89)
Q Consensus 38 v~l~F~s~e~Aiayae~--~G~ 57 (89)
--+.|.+.++|.+-.+. +|.
T Consensus 51 afV~f~~~~~A~~a~~~l~~~~ 72 (85)
T 2ytc_A 51 AFIQFATRQAAEVAAEKSFNKL 72 (85)
T ss_dssp EEEEESSHHHHHHHHHTTTTTC
T ss_pred EEEEECCHHHHHHHHHHhcCCe
Confidence 35789999999988875 554
No 220
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=20.74 E-value=42 Score=23.81 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=22.0
Q ss_pred CceeeecCCHHH--HHHHHHHcCccEEEecc
Q psy627 36 SNLALNFSSKED--AIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 36 ~qv~l~F~s~e~--Aiayae~~G~~Y~V~~p 64 (89)
.+|.+-+.++.+ ++++|+++||++.+..+
T Consensus 36 ~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~ 66 (215)
T 3kcq_A 36 VVISCVISNNAEARGLLIAQSYGIPTFVVKR 66 (215)
T ss_dssp EEEEEEEESCTTCTHHHHHHHTTCCEEECCB
T ss_pred cEEEEEEeCCcchHHHHHHHHcCCCEEEeCc
Confidence 467777776655 57799999999988655
No 221
>3sol_A Type II secretion pathway related protein; general secretory pathway, protein transport, pilotin; 1.90A {Escherichia coli}
Probab=20.74 E-value=47 Score=21.24 Aligned_cols=13 Identities=23% Similarity=0.394 Sum_probs=11.8
Q ss_pred HHHHHHHHcCccE
Q psy627 47 DAIQYCQKNGWKF 59 (89)
Q Consensus 47 ~Aiayae~~G~~Y 59 (89)
.||.+|..+||+-
T Consensus 38 ~a~~~A~~~gWD~ 50 (94)
T 3sol_A 38 VANRIAIGKGWQS 50 (94)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHcCCCh
Confidence 7999999999984
No 222
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.72 E-value=36 Score=21.00 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=16.5
Q ss_pred eeecCCHHHHHHHHHHcCc
Q psy627 39 ALNFSSKEDAIQYCQKNGW 57 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~ 57 (89)
+|...++.++|++|.++||
T Consensus 76 KLgv~~r~elv~~a~~~gl 94 (99)
T 1p4w_A 76 KLGVDNDIALLNYLSSVSM 94 (99)
T ss_dssp HHTCSSHHHHHHHHHHHTC
T ss_pred HHCCCCHHHHHHHHHHcCC
Confidence 4667899999999999997
No 223
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc, PSI-biology, structural genomics; 1.96A {Sinorhizobium meliloti}
Probab=20.68 E-value=57 Score=23.68 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCccEEEeccCC
Q psy627 45 KEDAIQYCQKNGWKFFVEEPKW 66 (89)
Q Consensus 45 ~e~Aiayae~~G~~Y~V~~p~~ 66 (89)
..+-+.||+++||.+..-.|-.
T Consensus 189 ~~~l~~~~~~~gi~v~a~spL~ 210 (298)
T 3up8_A 189 QTKVLQTARRLGMSLTSYYAMA 210 (298)
T ss_dssp CHHHHHHHHHHTCEEEEECTTG
T ss_pred cHHHHHHHHHCCCEEEEECCCc
Confidence 4689999999999999887764
No 224
>3ndc_A Precorrin-4 C(11)-methyltransferase; SAH; HET: SAH; 2.00A {Rhodobacter capsulatus} PDB: 3nei_A
Probab=20.66 E-value=71 Score=22.71 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=18.5
Q ss_pred ecCCHHHHHHHHHHcCccEEEecc
Q psy627 41 NFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 41 ~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
-|..--+-++.|.+.|++++|..-
T Consensus 89 iyg~~~~l~~~l~~~gi~veviPG 112 (264)
T 3ndc_A 89 IWSAMGEQLRRLRALNIPYDVTPG 112 (264)
T ss_dssp SSCSHHHHHHHHHHTTCCEEEECC
T ss_pred cccHHHHHHHHHHhCCCCEEEeCC
Confidence 466666777888888999998764
No 225
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=20.51 E-value=36 Score=22.01 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=16.2
Q ss_pred eeecCCHHHHHHHHHHcCc
Q psy627 39 ALNFSSKEDAIQYCQKNGW 57 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~ 57 (89)
+|...++-+|+.+|.++|+
T Consensus 196 Kl~~~~r~~l~~~a~~~g~ 214 (215)
T 1a04_A 196 KMKLKSRVEAAVWVHQERI 214 (215)
T ss_dssp HHTCCSHHHHHHHHHHHTC
T ss_pred HcCCCCHHHHHHHHHHcCC
Confidence 4667899999999999986
No 226
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=20.50 E-value=1.3e+02 Score=23.62 Aligned_cols=46 Identities=7% Similarity=-0.127 Sum_probs=33.8
Q ss_pred CCccCCCCCCCCCCCCCCceeeecCCHH---HHHHHHHHcCccEEEecc
Q psy627 19 ERWENPLMGWCSTGDPLSNLALNFSSKE---DAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 19 ~~~~dPLMGWtss~D~~~qv~l~F~s~e---~Aiayae~~G~~Y~V~~p 64 (89)
+.+.+-+.+|...-+....+.+.=.|.| +||++|.++|+++.|.--
T Consensus 18 ~~y~~~~~~~n~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrgg 66 (501)
T 3pop_A 18 PRYIELSHSDNHRFVVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSG 66 (501)
T ss_dssp TTHHHHTCCSCTTSCCCCSEEEECSSHHHHHHHHHHHHHTTCCEEEESS
T ss_pred cchHHHHHHHhhccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5666777888777666666655555554 578999999999998763
No 227
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=20.45 E-value=36 Score=21.61 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=20.4
Q ss_pred CCCCceeeec----CCHHHHHHHHHHcCccEEEec
Q psy627 33 DPLSNLALNF----SSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 33 D~~~qv~l~F----~s~e~Aiayae~~G~~Y~V~~ 63 (89)
|+++.|.|+- ++...|.++.+.+|++|++..
T Consensus 2 ~~M~~i~iY~~p~C~~c~ka~~~L~~~gi~~~~~d 36 (121)
T 3rdw_A 2 NAMKDVTIYHNPRCSKSRETLALVEQQGITPQVVL 36 (121)
T ss_dssp ----CCEEECCTTCHHHHHHHHHHHTTTCCCEEEC
T ss_pred CCCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEe
Confidence 4455554432 345789999999999999875
No 228
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.43 E-value=43 Score=18.27 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.7
Q ss_pred eeecCCHHHHHHHHHHcCc
Q psy627 39 ALNFSSKEDAIQYCQKNGW 57 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~ 57 (89)
+|.-.+..+++.+|.++|+
T Consensus 53 kl~~~~~~~~~~~~~~~g~ 71 (74)
T 1fse_A 53 KLGVKGRSQAVVELLRMGE 71 (74)
T ss_dssp HHTCSSHHHHHHHHHHTTS
T ss_pred HHCCCCHHHHHHHHHHhCC
Confidence 3556788999999999986
No 229
>3hdp_A Glyoxalase-I; glutathione,lyase, methylglyoxal,11003P,PSI2, structural GENOMIC,NYSGXRC., structural genomics; 2.06A {Clostridium acetobutylicum} PDB: 2qh0_A
Probab=20.41 E-value=52 Score=19.32 Aligned_cols=29 Identities=10% Similarity=0.273 Sum_probs=23.5
Q ss_pred CCCceeeecCCHHHHHHHHHHcCccEEEe
Q psy627 34 PLSNLALNFSSKEDAIQYCQKNGWKFFVE 62 (89)
Q Consensus 34 ~~~qv~l~F~s~e~Aiayae~~G~~Y~V~ 62 (89)
....+.+.-++.+++++.++++|+.+...
T Consensus 77 g~~hiaf~v~di~~~~~~l~~~G~~~~~~ 105 (133)
T 3hdp_A 77 TPYHICYEVEDIQKSIEEMSQIGYTLFKK 105 (133)
T ss_dssp EEEEEEEEESCHHHHHHHHTTTTEEEEEE
T ss_pred ceEEEEEEcCCHHHHHHHHHHcCCccccC
Confidence 34467788899999999999999987543
No 230
>1s1p_A Aldo-keto reductase family 1 member C3; TIM-barrel, oxidoreductase; HET: NAP; 1.20A {Homo sapiens} SCOP: c.1.7.1 PDB: 1s1r_A* 1s2a_A* 1s2c_A* 3uwe_A* 3r58_A* 3r43_A* 3r7m_A* 3r6i_A* 3r8h_A* 3r94_A* 3r8g_A* 1zq5_A* 1ry8_A* 1xf0_A* 1ry0_A* 2f38_A* 2fgb_A* 4dbs_A* 4dbu_A* 3gug_A* ...
Probab=20.38 E-value=64 Score=23.51 Aligned_cols=24 Identities=4% Similarity=0.217 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCccEEEeccCCCC
Q psy627 45 KEDAIQYCQKNGWKFFVEEPKWKT 68 (89)
Q Consensus 45 ~e~Aiayae~~G~~Y~V~~p~~~~ 68 (89)
.++-+.||+++||.+..-.|-...
T Consensus 199 ~~~l~~~~~~~gI~v~a~spL~~G 222 (331)
T 1s1p_A 199 RSKLLDFCKSKDIVLVAYSALGSQ 222 (331)
T ss_dssp CHHHHHHHHHTTCEEEEESTTSCC
T ss_pred hHHHHHHHHHcCCEEEEeccccCC
Confidence 367999999999999998886543
No 231
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.36 E-value=33 Score=22.23 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.5
Q ss_pred CceeeecCCHHHHHHH
Q psy627 36 SNLALNFSSKEDAIQY 51 (89)
Q Consensus 36 ~qv~l~F~s~e~Aiay 51 (89)
.-|++.|.+.|+|++-
T Consensus 47 RRirv~F~~~~~A~~A 62 (104)
T 1wey_A 47 KRVRINFSNPLSAADA 62 (104)
T ss_dssp TEEEEECSSTTHHHHH
T ss_pred eEEEEEeCChHHHHHH
Confidence 3589999999999874
No 232
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=20.32 E-value=69 Score=20.84 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.2
Q ss_pred CCceeeecCCHHHHHHHHHH
Q psy627 35 LSNLALNFSSKEDAIQYCQK 54 (89)
Q Consensus 35 ~~qv~l~F~s~e~Aiayae~ 54 (89)
..+.-|+|.|.|+|-.|.+.
T Consensus 108 ~~~~~irfk~~e~A~~f~~~ 127 (134)
T 1rrp_B 108 PEQLAIRFKTPEEAALFKCK 127 (134)
T ss_dssp EEEEEEECSSHHHHHHHHHH
T ss_pred eEEEEEEECCHHHHHHHHHH
Confidence 45689999999999999765
No 233
>4ggi_A UDP-2,3-diacylglucosamine pyrophosphatase LPXI; structural genomics, PSI-biology; HET: UDG; 2.52A {Caulobacter crescentus} PDB: 4ggm_X*
Probab=20.30 E-value=80 Score=22.96 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=8.3
Q ss_pred HHHHHHHHHcCccEEEec
Q psy627 46 EDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 46 e~Aiayae~~G~~Y~V~~ 63 (89)
-+.|.-|.+.|+...|.+
T Consensus 234 ~dti~~~~~ag~~~ivi~ 251 (283)
T 4ggi_A 234 VATIHRAARAGLAGIVGE 251 (283)
T ss_dssp HHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHcCCeEEEEc
Confidence 344444444555544433
No 234
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=20.30 E-value=84 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=20.8
Q ss_pred eecCCHHHHHHHHHHcCccEEEecc
Q psy627 40 LNFSSKEDAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 40 l~F~s~e~Aiayae~~G~~Y~V~~p 64 (89)
..|.+.++|.+++++.|+++.|-..
T Consensus 142 ~~~~~~~ea~~~~~~~g~PvVvKp~ 166 (442)
T 3lp8_A 142 GYFVDTNSAYKFIDKHKLPLVVKAD 166 (442)
T ss_dssp EEESSHHHHHHHHHHSCSSEEEEES
T ss_pred EEECCHHHHHHHHHHcCCcEEEeEC
Confidence 4578999999999999999877543
No 235
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=20.26 E-value=80 Score=22.00 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=23.4
Q ss_pred CCCCCCceeeecCCHHHHHHHHHHcCccEEEeccC
Q psy627 31 TGDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPK 65 (89)
Q Consensus 31 s~D~~~qv~l~F~s~e~Aiayae~~G~~Y~V~~p~ 65 (89)
+|||. .|.+-..-++.|.+.|++++|..-.
T Consensus 104 ~GDP~-----~~~~~~~l~~~l~~~gi~v~viPGi 133 (259)
T 2e0n_A 104 VGDGG-----FYSTASAIIERARRDGLDCSMTPGI 133 (259)
T ss_dssp SBCTT-----BSCTHHHHHHHHHTTTCCEEEECCC
T ss_pred CCCCc-----ccccHHHHHHHHHHCCCCEEEeCCh
Confidence 56663 4788878889999999999998643
No 236
>3ghj_A Putative integron gene cassette protein; integron cassette protein, mobIle metagenome, structural genomics, PSI-2; 1.47A {Uncultured bacterium}
Probab=20.26 E-value=1.1e+02 Score=18.56 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=22.2
Q ss_pred CCceeeecC--CHHHHHHHHHHcCccEE
Q psy627 35 LSNLALNFS--SKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 35 ~~qv~l~F~--s~e~Aiayae~~G~~Y~ 60 (89)
...+.+.++ +.+++++.+++.|+.+.
T Consensus 86 ~~h~~~~v~~~dld~~~~~l~~~G~~~~ 113 (141)
T 3ghj_A 86 QQHFSFRVEKSEIEPLKKALESKGVSVH 113 (141)
T ss_dssp CCEEEEEECGGGHHHHHHHHHHTTCCCE
T ss_pred CceEEEEEeHHHHHHHHHHHHHCCCeEe
Confidence 456778887 99999999999999976
No 237
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=20.26 E-value=85 Score=17.96 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=16.7
Q ss_pred ceeeecCCHHHHHHHHHH-cCcc
Q psy627 37 NLALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 37 qv~l~F~s~e~Aiayae~-~G~~ 58 (89)
-.-+.|.+.++|.+-.+. +|..
T Consensus 46 ~afV~f~~~~~A~~Ai~~l~g~~ 68 (96)
T 2x1f_A 46 YAFIEFRDLESSASAVRNLNGYQ 68 (96)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCE
T ss_pred EEEEEECCHHHHHHHHHHhCCCe
Confidence 346899999999987754 6654
No 238
>3u02_A Putative transcription-associated protein TFIIS; structural genomics, PSI-biology; HET: TPO MSE CIT MES; 2.40A {Pyrococcus furiosus dsm 3638}
Probab=20.26 E-value=64 Score=23.77 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=17.9
Q ss_pred eeecCCHHHHHHHHHHcCccEE
Q psy627 39 ALNFSSKEDAIQYCQKNGWKFF 60 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~Y~ 60 (89)
.-.+-|+|+|.+.|++.|+.+.
T Consensus 114 ~~~vvt~~~A~~~a~~~gi~~~ 135 (252)
T 3u02_A 114 LREHVTIEEAEHVARKVNAEVY 135 (252)
T ss_dssp HHSCCCHHHHHHHHHHTTCEEE
T ss_pred HHcccCHHHHHHHHHHCCcEEE
Confidence 3456789999999999999654
No 239
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=20.24 E-value=1.2e+02 Score=23.74 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=28.7
Q ss_pred CCCCCCCCCCceeeecCCHH---HHHHHHHHcCccEEEecc
Q psy627 27 GWCSTGDPLSNLALNFSSKE---DAIQYCQKNGWKFFVEEP 64 (89)
Q Consensus 27 GWtss~D~~~qv~l~F~s~e---~Aiayae~~G~~Y~V~~p 64 (89)
-|.++.++...+.+.=.|.| +||++|.++|+++.|.--
T Consensus 37 r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrGg 77 (495)
T 3fw9_A 37 LFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSG 77 (495)
T ss_dssp GGCSTTSCCCSEEECCCSHHHHHHHHHHHHTSSCEEEEESS
T ss_pred ccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEECC
Confidence 47777777767666656665 479999999999998764
No 240
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=20.24 E-value=78 Score=19.95 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.1
Q ss_pred eeecCCHHHHHHHHHH-cCcc
Q psy627 39 ALNFSSKEDAIQYCQK-NGWK 58 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~-~G~~ 58 (89)
-+.|.+.|+|.+-++. +|..
T Consensus 85 fV~f~~~~~A~~Ai~~l~g~~ 105 (156)
T 1h2v_Z 85 FVEYYSRADAENAMRYINGTR 105 (156)
T ss_dssp EEEESSHHHHHHHHHHTTTSE
T ss_pred EEEECCHHHHHHHHHHhCCCE
Confidence 5789999999998886 5544
No 241
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=20.07 E-value=68 Score=22.60 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHcCccEEEec
Q psy627 43 SSKEDAIQYCQKNGWKFFVEE 63 (89)
Q Consensus 43 ~s~e~Aiayae~~G~~Y~V~~ 63 (89)
+..|+|...++..|++|+|.-
T Consensus 26 ~v~~~a~~~l~~~gi~~ev~V 46 (173)
T 4grd_A 26 DVMKHAVAILQEFGVPYEAKV 46 (173)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEE
Confidence 557999999999999998865
No 242
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=20.06 E-value=54 Score=18.25 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=16.0
Q ss_pred eeecCCHHHHHHHHHHcCcc
Q psy627 39 ALNFSSKEDAIQYCQKNGWK 58 (89)
Q Consensus 39 ~l~F~s~e~Aiayae~~G~~ 58 (89)
-+.|.+.|+|.+-.+-+|..
T Consensus 57 fV~f~~~~~a~~A~~l~g~~ 76 (87)
T 2hzc_A 57 FLEFRSVDETTQAMAFDGII 76 (87)
T ss_dssp EEEESSHHHHHHHGGGTTCE
T ss_pred EEEcCCHHHHHHHHhcCCCE
Confidence 47899999999887666654
Done!