RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy627
         (89 letters)



>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein
          3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
          Length = 60

 Score = 25.5 bits (56), Expect = 0.31
 Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 2/20 (10%)

Query: 46 EDAIQYCQKNGWKFFVEEPK 65
          ++   YC+K GW   V    
Sbjct: 32 QEVRDYCEKKGW--IVNITS 49


>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 188

 Score = 24.6 bits (52), Expect = 1.9
 Identities = 1/23 (4%), Positives = 8/23 (34%)

Query: 37  NLALNFSSKEDAIQYCQKNGWKF 59
           +       + +  ++    G+ +
Sbjct: 160 DFIDELGGRHEMSEFMIACGFDY 182


>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379
          {Pseudomonas syringae pv. tomato [TaxId: 323]}
          Length = 256

 Score = 24.4 bits (53), Expect = 1.9
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 24 PLMGWCSTGDPLSNLALNFSSKEDAIQYC 52
          P++     G P + LA     + D   Y 
Sbjct: 59 PILDVSDAGSPTTLLAEGSDLRTDIPMYR 87


>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}
          Length = 81

 Score = 23.6 bits (51), Expect = 2.9
 Identities = 6/32 (18%), Positives = 14/32 (43%)

Query: 32 GDPLSNLALNFSSKEDAIQYCQKNGWKFFVEE 63
          G+ L  +A + ++  D   +C     +   +E
Sbjct: 36 GETLLIIADDPATTRDIPGFCTFMEHELVAKE 67


>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal
           domain {Thermus thermophilus [TaxId: 274]}
          Length = 165

 Score = 23.6 bits (49), Expect = 3.9
 Identities = 4/17 (23%), Positives = 10/17 (58%)

Query: 40  LNFSSKEDAIQYCQKNG 56
            +F  +++ I Y + +G
Sbjct: 145 WSFQGRKEMIAYAEAHG 161


>d1pava_ d.68.3.3 (A:) Hypothetical protein Ta1170/Ta1414
          {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
          Length = 78

 Score = 22.8 bits (49), Expect = 4.2
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 32 GDPLSNLALNFSSKEDAIQYCQKNGWKFFVEEPK 65
          G+ +S  + +  +K+DA  + QK+G +      +
Sbjct: 33 GEVISVYSTDAGTKKDAPAWIQKSGQELVGVFDR 66


>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 22.4 bits (48), Expect = 7.5
 Identities = 8/36 (22%), Positives = 18/36 (50%)

Query: 40 LNFSSKEDAIQYCQKNGWKFFVEEPKWKTPKVKSYA 75
          +NF ++ED I +  +     F++    + P +  +A
Sbjct: 50 INFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFA 85


>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 168

 Score = 22.8 bits (47), Expect = 7.5
 Identities = 5/20 (25%), Positives = 7/20 (35%)

Query: 37  NLALNFSSKEDAIQYCQKNG 56
                F  + D I Y  + G
Sbjct: 146 EFLAKFKGRTDLINYAMEKG 165


>d1mwpa_ d.170.2.1 (A:) N-terminal domain of the amyloid precursor
          protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 96

 Score = 22.4 bits (48), Expect = 8.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 42 FSSKEDAIQYCQK 54
            +KE  +QYCQ+
Sbjct: 36 IDTKEGILQYCQE 48


>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein
           {Geminivirus (Tomato yellow leaf curl virus - sardinia)
           [TaxId: 123735]}
          Length = 118

 Score = 22.4 bits (48), Expect = 9.5
 Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 3/48 (6%)

Query: 12  FIQFDTRERWENPLMGWCSTGDPLSNLALNF---SSKEDAIQYCQKNG 56
            IQF+ +    N       +    ++   N     S  D   Y  K+G
Sbjct: 58  LIQFEGKYNCTNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYIDKDG 105


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.129    0.443 

Gapped
Lambda     K      H
   0.267   0.0652    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 360,347
Number of extensions: 13753
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 22
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)