Query psy6272
Match_columns 547
No_of_seqs 264 out of 1587
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 22:09:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6272.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6272hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00066 pyruvate kinase; Prov 100.0 1E-125 3E-130 1020.7 54.5 479 35-545 19-513 (513)
2 PLN02762 pyruvate kinase compl 100.0 5E-124 1E-128 1009.4 54.8 459 52-545 24-509 (509)
3 PLN02461 Probable pyruvate kin 100.0 4E-122 9E-127 994.7 54.7 469 46-545 14-511 (511)
4 PRK09206 pyruvate kinase; Prov 100.0 1E-121 2E-126 986.3 54.3 456 52-544 1-470 (470)
5 PRK06247 pyruvate kinase; Prov 100.0 9E-121 2E-125 978.5 54.1 455 51-545 3-471 (476)
6 PLN02765 pyruvate kinase 100.0 6E-120 1E-124 978.4 54.9 478 33-545 10-525 (526)
7 cd00288 Pyruvate_Kinase Pyruva 100.0 2E-119 4E-124 973.9 55.2 466 52-544 1-480 (480)
8 COG0469 PykF Pyruvate kinase [ 100.0 2E-119 5E-124 963.2 51.7 461 50-544 2-477 (477)
9 PRK06354 pyruvate kinase; Prov 100.0 3E-119 7E-124 991.0 54.4 458 50-545 5-479 (590)
10 PRK05826 pyruvate kinase; Prov 100.0 2E-116 4E-121 947.4 52.5 445 51-532 2-461 (465)
11 PLN02623 pyruvate kinase 100.0 4E-116 9E-121 954.9 55.3 476 22-544 88-579 (581)
12 KOG2323|consensus 100.0 4E-117 1E-121 940.5 44.3 485 35-544 2-501 (501)
13 PTZ00300 pyruvate kinase; Prov 100.0 5E-113 1E-117 915.8 52.1 440 79-545 1-454 (454)
14 TIGR01064 pyruv_kin pyruvate k 100.0 2E-110 4E-115 906.4 53.2 457 53-541 1-473 (473)
15 PF00224 PK: Pyruvate kinase, 100.0 1.5E-96 3E-101 771.4 34.4 334 52-409 1-348 (348)
16 PRK06739 pyruvate kinase; Vali 100.0 2.5E-92 5.5E-97 735.3 37.1 317 54-403 2-332 (352)
17 PRK14725 pyruvate kinase; Prov 100.0 9.1E-91 2E-95 756.2 40.5 363 14-403 109-597 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 8.5E-88 1.8E-92 727.5 38.3 355 14-403 103-480 (493)
19 PF02887 PK_C: Pyruvate kinase 100.0 8.4E-30 1.8E-34 227.9 13.3 116 423-543 1-117 (117)
20 TIGR03239 GarL 2-dehydro-3-deo 99.7 1.7E-17 3.6E-22 167.4 12.6 137 233-386 65-235 (249)
21 PRK10558 alpha-dehydro-beta-de 99.7 2.5E-17 5.5E-22 166.7 12.3 137 233-386 72-242 (256)
22 PRK10128 2-keto-3-deoxy-L-rham 99.7 7.4E-17 1.6E-21 164.1 13.7 136 234-386 72-242 (267)
23 COG3836 HpcH 2,4-dihydroxyhept 99.7 2.1E-16 4.6E-21 155.4 14.7 138 232-386 69-241 (255)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.6 1.1E-15 2.5E-20 154.1 11.2 136 234-386 66-236 (249)
25 PF03328 HpcH_HpaI: HpcH/HpaI 99.5 2.9E-14 6.3E-19 140.7 7.3 102 240-342 73-189 (221)
26 TIGR01418 PEP_synth phosphoeno 99.4 3.3E-12 7.2E-17 147.3 13.8 136 237-386 611-771 (782)
27 PRK06464 phosphoenolpyruvate s 99.4 5.6E-12 1.2E-16 145.5 14.4 147 237-401 618-789 (795)
28 TIGR01588 citE citrate lyase, 99.3 6.3E-11 1.4E-15 122.1 15.3 155 238-401 71-252 (288)
29 TIGR01417 PTS_I_fam phosphoeno 99.3 3.5E-11 7.6E-16 134.3 13.5 133 235-380 366-525 (565)
30 PRK11177 phosphoenolpyruvate-p 99.2 2.2E-10 4.7E-15 128.1 14.2 135 233-380 365-526 (575)
31 COG2301 CitE Citrate lyase bet 98.6 1.2E-07 2.6E-12 97.4 10.0 153 238-401 66-244 (283)
32 PF02896 PEP-utilizers_C: PEP- 98.5 1.4E-06 3.1E-11 90.2 12.1 135 235-383 119-280 (293)
33 cd00727 malate_synt_A Malate s 98.2 1.3E-05 2.8E-10 88.4 12.0 154 228-388 162-352 (511)
34 cd00480 malate_synt Malate syn 98.0 1.4E-05 3.1E-10 88.5 9.2 133 252-387 184-351 (511)
35 TIGR01344 malate_syn_A malate 98.0 4.1E-05 8.9E-10 84.5 12.4 157 228-389 163-354 (511)
36 PRK09255 malate synthase; Vali 98.0 2.8E-05 6.1E-10 86.1 9.9 141 242-386 194-371 (531)
37 PRK11061 fused phosphoenolpyru 97.7 0.00014 3.1E-09 84.4 9.8 128 240-380 537-692 (748)
38 PLN02626 malate synthase 97.4 0.0017 3.8E-08 72.0 12.7 145 242-389 198-380 (551)
39 TIGR01828 pyru_phos_dikin pyru 97.3 0.0021 4.6E-08 75.6 12.3 134 234-380 669-850 (856)
40 PRK08649 inosine 5-monophospha 97.2 0.0059 1.3E-07 65.5 13.9 122 240-380 142-285 (368)
41 PF00478 IMPDH: IMP dehydrogen 97.1 0.011 2.3E-07 63.1 15.0 125 238-380 106-240 (352)
42 COG1080 PtsA Phosphoenolpyruva 96.7 0.029 6.4E-07 62.7 14.6 135 233-380 366-527 (574)
43 cd00381 IMPDH IMPDH: The catal 96.6 0.042 9E-07 58.1 14.4 126 238-380 92-226 (325)
44 TIGR01305 GMP_reduct_1 guanosi 96.5 0.053 1.1E-06 57.4 14.4 127 236-380 103-241 (343)
45 PRK09279 pyruvate phosphate di 96.5 0.012 2.7E-07 69.4 10.8 135 233-380 674-856 (879)
46 PRK05096 guanosine 5'-monophos 96.4 0.069 1.5E-06 56.6 14.5 126 237-380 105-242 (346)
47 TIGR02751 PEPCase_arch phospho 96.2 0.021 4.6E-07 63.3 9.7 91 252-342 122-247 (506)
48 PTZ00314 inosine-5'-monophosph 96.2 0.088 1.9E-06 58.8 14.7 124 238-380 239-373 (495)
49 TIGR01304 IMP_DH_rel_2 IMP deh 96.2 0.07 1.5E-06 57.4 13.1 120 240-380 143-284 (369)
50 PRK07107 inosine 5-monophospha 95.8 0.15 3.2E-06 57.1 14.0 121 241-380 243-381 (502)
51 PRK06843 inosine 5-monophospha 95.8 0.2 4.4E-06 54.5 14.6 125 238-380 151-285 (404)
52 PLN02274 inosine-5'-monophosph 95.6 0.19 4.2E-06 56.2 13.8 125 238-380 246-380 (505)
53 TIGR01302 IMP_dehydrog inosine 95.4 0.41 8.8E-06 52.8 15.6 125 238-380 222-356 (450)
54 PRK13655 phosphoenolpyruvate c 95.4 0.084 1.8E-06 58.6 9.9 92 251-342 120-239 (494)
55 PRK07807 inosine 5-monophospha 95.3 0.36 7.8E-06 53.7 14.5 129 235-380 222-359 (479)
56 TIGR01306 GMP_reduct_2 guanosi 94.7 0.43 9.3E-06 50.5 12.7 124 236-380 90-227 (321)
57 COG3605 PtsP Signal transducti 94.7 0.21 4.7E-06 56.1 10.5 135 252-401 558-719 (756)
58 COG0574 PpsA Phosphoenolpyruva 94.6 0.15 3.2E-06 59.7 9.8 117 254-385 596-727 (740)
59 TIGR03151 enACPred_II putative 94.6 0.6 1.3E-05 49.0 13.4 114 240-380 75-190 (307)
60 PRK07565 dihydroorotate dehydr 94.4 0.91 2E-05 48.0 14.2 146 242-404 117-291 (334)
61 cd04730 NPD_like 2-Nitropropan 94.3 0.81 1.8E-05 45.2 13.1 116 240-380 68-185 (236)
62 PRK05458 guanosine 5'-monophos 94.1 1.3 2.9E-05 47.0 14.8 124 238-380 95-230 (326)
63 PRK00009 phosphoenolpyruvate c 94.1 0.29 6.3E-06 58.3 10.9 92 252-343 486-605 (911)
64 PTZ00398 phosphoenolpyruvate c 94.0 0.45 9.7E-06 57.2 12.2 111 233-343 523-662 (974)
65 cd04740 DHOD_1B_like Dihydroor 93.9 1.9 4.1E-05 44.5 15.2 122 242-380 105-260 (296)
66 PRK05286 dihydroorotate dehydr 93.8 1.4 3E-05 46.9 14.4 148 240-402 157-339 (344)
67 PRK13125 trpA tryptophan synth 93.8 1.2 2.7E-05 44.9 13.4 117 242-380 91-214 (244)
68 PRK05567 inosine 5'-monophosph 93.7 1.3 2.9E-05 49.2 14.5 123 240-380 228-360 (486)
69 PRK01130 N-acetylmannosamine-6 93.6 1.3 2.8E-05 43.8 12.9 119 241-380 77-202 (221)
70 cd02940 DHPD_FMN Dihydropyrimi 93.2 1.2 2.5E-05 46.5 12.3 124 240-380 113-281 (299)
71 PRK02290 3-dehydroquinate synt 93.1 1.4 3.1E-05 46.8 12.8 207 239-473 13-264 (344)
72 PRK15452 putative protease; Pr 93.1 1.7 3.7E-05 48.0 14.0 124 240-392 11-152 (443)
73 PRK08318 dihydropyrimidine deh 92.9 1.5 3.3E-05 47.7 13.2 147 240-404 113-305 (420)
74 TIGR01303 IMP_DH_rel_1 IMP deh 92.8 1.9 4.1E-05 48.1 14.0 126 235-380 220-357 (475)
75 COG0826 Collagenase and relate 92.6 0.89 1.9E-05 48.6 10.7 128 239-395 13-159 (347)
76 cd02810 DHOD_DHPD_FMN Dihydroo 92.5 3 6.6E-05 42.7 14.1 124 242-380 114-272 (289)
77 KOG2550|consensus 92.1 0.87 1.9E-05 49.4 9.7 126 238-380 249-383 (503)
78 PRK15447 putative protease; Pr 92.1 2.5 5.5E-05 44.2 13.2 125 240-393 15-150 (301)
79 cd04729 NanE N-acetylmannosami 92.0 3.5 7.6E-05 40.7 13.4 119 241-380 81-206 (219)
80 cd02809 alpha_hydroxyacid_oxid 91.8 6.3 0.00014 41.0 15.7 115 242-385 132-260 (299)
81 COG1751 Uncharacterized conser 91.8 1.4 3E-05 42.0 9.5 109 421-533 10-156 (186)
82 cd04722 TIM_phosphate_binding 91.6 2.9 6.2E-05 38.8 11.8 116 245-380 77-199 (200)
83 PRK08883 ribulose-phosphate 3- 91.4 6.1 0.00013 39.6 14.5 128 231-380 60-195 (220)
84 TIGR01163 rpe ribulose-phospha 90.9 7.3 0.00016 37.6 14.1 120 242-380 69-193 (210)
85 CHL00200 trpA tryptophan synth 90.5 8.2 0.00018 39.8 14.7 121 242-380 109-231 (263)
86 PLN02826 dihydroorotate dehydr 90.4 11 0.00024 41.3 16.4 109 279-402 261-391 (409)
87 PF14010 PEPcase_2: Phosphoeno 90.2 0.79 1.7E-05 50.9 7.4 91 251-341 119-244 (491)
88 PF01959 DHQS: 3-dehydroquinat 90.2 2.9 6.2E-05 44.8 11.3 209 241-473 14-274 (354)
89 cd04726 KGPDC_HPS 3-Keto-L-gul 90.0 5.3 0.00012 38.4 12.3 113 243-380 68-186 (202)
90 cd04738 DHOD_2_like Dihydrooro 89.7 9.5 0.00021 40.3 14.9 115 252-380 160-309 (327)
91 cd04739 DHOD_like Dihydroorota 89.6 8.7 0.00019 40.6 14.5 143 243-404 116-289 (325)
92 TIGR01037 pyrD_sub1_fam dihydr 89.4 15 0.00032 38.0 15.8 132 252-402 118-283 (300)
93 PLN02591 tryptophan synthase 89.0 5.4 0.00012 40.9 11.9 120 242-380 96-218 (250)
94 cd04732 HisA HisA. Phosphorib 88.9 9.9 0.00021 37.5 13.6 119 241-380 84-219 (234)
95 PRK05581 ribulose-phosphate 3- 88.8 17 0.00036 35.4 15.0 127 236-380 68-198 (220)
96 PRK07259 dihydroorotate dehydr 88.7 9.7 0.00021 39.4 13.9 141 242-401 107-282 (301)
97 cd03174 DRE_TIM_metallolyase D 88.7 27 0.00059 34.8 16.8 135 235-380 14-166 (265)
98 cd00429 RPE Ribulose-5-phospha 88.3 7.2 0.00016 37.5 11.9 119 243-380 71-194 (211)
99 cd00945 Aldolase_Class_I Class 88.3 4.6 9.9E-05 38.1 10.4 93 242-343 16-119 (201)
100 cd00958 DhnA Class I fructose- 88.2 2.5 5.4E-05 42.1 8.8 75 237-316 140-221 (235)
101 cd02922 FCB2_FMN Flavocytochro 88.2 17 0.00036 39.0 15.5 99 262-386 200-305 (344)
102 cd04742 NPD_FabD 2-Nitropropan 87.9 15 0.00032 40.6 15.0 125 241-380 84-248 (418)
103 COG1465 Predicted alternative 87.5 7.6 0.00016 40.7 11.8 132 242-401 18-194 (376)
104 TIGR02320 PEP_mutase phosphoen 87.5 22 0.00047 37.2 15.4 132 242-399 95-258 (285)
105 PTZ00170 D-ribulose-5-phosphat 87.0 10 0.00023 38.0 12.5 86 228-319 64-151 (228)
106 PLN02334 ribulose-phosphate 3- 86.8 21 0.00046 35.5 14.5 133 228-380 64-202 (229)
107 cd00452 KDPG_aldolase KDPG and 86.8 17 0.00036 35.2 13.4 105 241-380 18-124 (190)
108 TIGR01036 pyrD_sub2 dihydrooro 86.7 14 0.00031 39.3 13.9 87 280-380 210-317 (335)
109 PRK00694 4-hydroxy-3-methylbut 86.6 9.1 0.0002 43.5 12.7 124 218-345 24-166 (606)
110 PF03060 NMO: Nitronate monoox 86.6 9.7 0.00021 40.3 12.6 114 241-380 102-219 (330)
111 cd00377 ICL_PEPM Members of th 86.4 11 0.00023 38.3 12.3 128 242-395 87-240 (243)
112 TIGR01163 rpe ribulose-phospha 86.1 27 0.00059 33.6 14.5 112 242-379 14-132 (210)
113 PRK13307 bifunctional formalde 85.9 18 0.00039 39.5 14.3 114 245-380 243-358 (391)
114 PF00311 PEPcase: Phosphoenolp 85.7 3.3 7.1E-05 49.0 9.2 91 253-343 364-482 (794)
115 TIGR00262 trpA tryptophan synt 85.6 11 0.00024 38.5 12.1 125 237-380 100-227 (256)
116 PF00290 Trp_syntA: Tryptophan 85.6 27 0.00058 36.1 14.7 118 244-380 107-226 (259)
117 PLN02495 oxidoreductase, actin 85.4 25 0.00053 38.4 15.1 151 237-405 124-323 (385)
118 PF00478 IMPDH: IMP dehydrogen 85.2 1.8 3.8E-05 46.5 6.1 51 53-104 95-146 (352)
119 cd02803 OYE_like_FMN_family Ol 85.1 27 0.00059 36.3 14.9 129 235-380 129-311 (327)
120 COG0434 SgcQ Predicted TIM-bar 84.3 8.9 0.00019 39.2 10.2 158 338-533 8-190 (263)
121 TIGR00612 ispG_gcpE 1-hydroxy- 84.3 15 0.00033 39.3 12.4 93 241-344 36-128 (346)
122 PRK13398 3-deoxy-7-phosphohept 84.2 20 0.00043 37.1 13.1 132 232-384 90-235 (266)
123 TIGR02814 pfaD_fam PfaD family 83.8 26 0.00056 38.9 14.5 124 241-380 89-253 (444)
124 PRK08745 ribulose-phosphate 3- 83.6 52 0.0011 33.1 15.8 74 232-308 65-138 (223)
125 PRK02048 4-hydroxy-3-methylbut 83.3 11 0.00023 43.2 11.4 123 219-345 21-162 (611)
126 cd04737 LOX_like_FMN L-Lactate 83.1 14 0.00031 39.6 12.0 92 263-385 209-309 (351)
127 PRK13813 orotidine 5'-phosphat 83.0 7.2 0.00016 38.2 9.1 52 244-295 72-123 (215)
128 cd02811 IDI-2_FMN Isopentenyl- 82.7 45 0.00097 35.3 15.4 30 337-380 255-284 (326)
129 cd07945 DRE_TIM_CMS Leptospira 82.2 51 0.0011 34.2 15.3 193 236-451 15-228 (280)
130 cd00331 IGPS Indole-3-glycerol 82.1 32 0.0007 33.7 13.3 113 243-380 85-201 (217)
131 PF01180 DHO_dh: Dihydroorotat 82.0 24 0.00052 36.5 12.9 147 239-401 111-293 (295)
132 PRK14045 1-aminocyclopropane-1 82.0 29 0.00063 36.6 13.7 47 425-471 166-221 (329)
133 COG2352 Ppc Phosphoenolpyruvat 81.9 4.9 0.00011 47.3 8.3 122 219-342 447-601 (910)
134 PRK00915 2-isopropylmalate syn 81.9 90 0.002 35.2 18.2 138 236-386 22-173 (513)
135 TIGR00973 leuA_bact 2-isopropy 81.7 59 0.0013 36.5 16.6 137 236-386 19-170 (494)
136 TIGR00007 phosphoribosylformim 81.4 36 0.00077 33.6 13.4 119 240-380 82-218 (230)
137 cd04741 DHOD_1A_like Dihydroor 81.4 58 0.0013 33.9 15.5 146 240-401 104-292 (294)
138 PRK03620 5-dehydro-4-deoxygluc 81.3 17 0.00037 37.9 11.5 98 242-343 31-138 (303)
139 cd00954 NAL N-Acetylneuraminic 80.6 16 0.00035 37.6 11.1 98 242-343 24-134 (288)
140 PF01274 Malate_synthase: Mala 80.4 6.2 0.00014 44.6 8.3 127 252-386 203-369 (526)
141 COG2870 RfaE ADP-heptose synth 80.3 51 0.0011 36.3 14.7 98 245-355 57-183 (467)
142 PRK07028 bifunctional hexulose 80.2 36 0.00079 37.2 14.2 117 244-380 73-190 (430)
143 PRK09722 allulose-6-phosphate 80.1 72 0.0016 32.3 15.9 149 231-397 61-220 (229)
144 TIGR00674 dapA dihydrodipicoli 80.0 18 0.0004 37.2 11.2 98 242-343 22-130 (285)
145 cd00958 DhnA Class I fructose- 80.0 59 0.0013 32.2 14.5 130 235-384 16-166 (235)
146 PLN02925 4-hydroxy-3-methylbut 80.0 16 0.00034 42.6 11.3 124 218-345 89-231 (733)
147 TIGR01138 cysM cysteine syntha 79.7 39 0.00086 34.9 13.5 120 329-471 74-200 (290)
148 TIGR01275 ACC_deam_rel pyridox 79.7 60 0.0013 33.7 15.0 121 329-469 73-204 (311)
149 TIGR02090 LEU1_arch isopropylm 79.6 59 0.0013 34.9 15.2 138 236-386 18-165 (363)
150 cd00640 Trp-synth-beta_II Tryp 79.3 37 0.00081 33.7 12.9 118 328-469 64-188 (244)
151 PF04551 GcpE: GcpE protein; 79.1 11 0.00024 40.5 9.3 101 240-344 32-138 (359)
152 cd00950 DHDPS Dihydrodipicolin 78.8 21 0.00046 36.5 11.2 98 242-343 24-132 (284)
153 cd01561 CBS_like CBS_like: Thi 78.4 41 0.0009 34.5 13.2 120 329-471 68-197 (291)
154 PRK07695 transcriptional regul 78.4 36 0.00078 33.0 12.1 105 245-380 66-177 (201)
155 TIGR00736 nifR3_rel_arch TIM-b 78.0 36 0.00079 34.5 12.3 125 233-380 73-220 (231)
156 PRK05096 guanosine 5'-monophos 77.8 3.9 8.5E-05 43.7 5.4 49 55-104 97-148 (346)
157 TIGR01136 cysKM cysteine synth 77.6 28 0.0006 36.0 11.7 121 329-471 73-200 (299)
158 PRK12483 threonine dehydratase 77.3 26 0.00057 39.6 12.1 156 281-472 52-224 (521)
159 TIGR03128 RuMP_HxlA 3-hexulose 77.3 52 0.0011 31.8 12.9 113 244-380 68-186 (206)
160 PRK02083 imidazole glycerol ph 76.9 80 0.0017 31.8 14.5 117 241-380 85-227 (253)
161 cd00945 Aldolase_Class_I Class 76.9 54 0.0012 30.7 12.7 100 364-471 69-182 (201)
162 TIGR02660 nifV_homocitr homoci 76.6 85 0.0018 33.7 15.4 137 236-386 19-166 (365)
163 PRK00366 ispG 4-hydroxy-3-meth 76.1 41 0.00089 36.3 12.4 115 219-345 22-138 (360)
164 cd04726 KGPDC_HPS 3-Keto-L-gul 76.0 25 0.00054 33.7 10.2 117 237-380 10-133 (202)
165 PRK04302 triosephosphate isome 75.9 42 0.00091 33.3 12.0 117 245-380 78-202 (223)
166 TIGR02708 L_lactate_ox L-lacta 75.9 22 0.00048 38.5 10.6 93 263-386 216-317 (367)
167 cd02808 GltS_FMN Glutamate syn 75.7 80 0.0017 34.3 15.0 123 247-385 178-318 (392)
168 PLN02970 serine racemase 75.6 33 0.00072 36.1 11.8 118 329-471 90-212 (328)
169 PLN02321 2-isopropylmalate syn 75.4 1.1E+02 0.0023 35.7 16.5 150 236-398 104-281 (632)
170 TIGR01305 GMP_reduct_1 guanosi 75.4 5.2 0.00011 42.8 5.6 49 55-104 96-147 (343)
171 TIGR00343 pyridoxal 5'-phospha 75.2 1.1E+02 0.0025 32.1 15.0 122 245-402 23-166 (287)
172 PF00899 ThiF: ThiF family; I 75.2 13 0.00027 33.7 7.5 69 265-344 56-124 (135)
173 PLN02417 dihydrodipicolinate s 74.9 29 0.00063 35.8 10.9 96 242-343 25-131 (280)
174 PRK13397 3-deoxy-7-phosphohept 74.6 26 0.00056 36.0 10.2 108 247-380 37-156 (250)
175 COG0119 LeuA Isopropylmalate/h 74.2 55 0.0012 36.0 13.2 140 235-386 19-170 (409)
176 cd02932 OYE_YqiM_FMN Old yello 74.2 87 0.0019 33.0 14.5 127 236-380 143-320 (336)
177 PRK00043 thiE thiamine-phospha 73.9 40 0.00087 32.5 11.1 104 244-380 73-188 (212)
178 PRK05581 ribulose-phosphate 3- 73.6 22 0.00048 34.6 9.3 88 242-344 19-116 (220)
179 PRK13111 trpA tryptophan synth 73.6 36 0.00079 34.9 11.1 117 243-380 108-228 (258)
180 PRK11858 aksA trans-homoaconit 73.5 1.4E+02 0.003 32.3 16.9 138 236-386 22-169 (378)
181 TIGR01182 eda Entner-Doudoroff 73.5 34 0.00073 34.1 10.5 104 243-380 24-128 (204)
182 cd01562 Thr-dehyd Threonine de 73.4 37 0.00081 34.8 11.3 119 328-471 79-202 (304)
183 PLN03013 cysteine synthase 73.4 28 0.0006 38.5 10.8 122 329-472 190-318 (429)
184 cd00951 KDGDH 5-dehydro-4-deox 73.4 37 0.0008 35.1 11.3 96 242-343 24-131 (289)
185 PRK13585 1-(5-phosphoribosyl)- 73.4 61 0.0013 32.2 12.5 120 240-380 86-222 (241)
186 TIGR02311 HpaI 2,4-dihydroxyhe 73.2 23 0.0005 36.1 9.5 94 270-387 3-98 (249)
187 PF03437 BtpA: BtpA family; I 73.2 21 0.00046 36.7 9.3 85 239-327 157-250 (254)
188 PRK03170 dihydrodipicolinate s 72.9 32 0.0007 35.4 10.7 98 242-343 25-133 (292)
189 PRK06512 thiamine-phosphate py 72.8 40 0.00087 33.7 11.0 110 245-380 80-192 (221)
190 PRK10558 alpha-dehydro-beta-de 72.8 28 0.0006 35.7 10.0 94 269-386 9-104 (256)
191 PRK09140 2-dehydro-3-deoxy-6-p 72.5 56 0.0012 32.3 11.8 104 244-380 27-131 (206)
192 TIGR01949 AroFGH_arch predicte 72.5 19 0.00041 36.6 8.8 73 240-315 156-233 (258)
193 PRK04147 N-acetylneuraminate l 72.3 38 0.00081 35.1 11.0 98 242-343 27-136 (293)
194 PF00834 Ribul_P_3_epim: Ribul 71.9 8.9 0.00019 37.9 6.0 70 237-309 65-134 (201)
195 PRK00278 trpC indole-3-glycero 71.8 89 0.0019 32.0 13.5 113 244-380 125-240 (260)
196 TIGR03572 WbuZ glycosyl amidat 71.5 81 0.0018 31.2 12.9 119 241-380 85-227 (232)
197 cd00405 PRAI Phosphoribosylant 71.4 61 0.0013 31.5 11.7 113 240-380 7-127 (203)
198 TIGR01139 cysK cysteine syntha 71.1 46 0.001 34.3 11.4 122 329-471 72-200 (298)
199 PRK07334 threonine dehydratase 71.1 43 0.00093 36.4 11.6 118 329-471 86-208 (403)
200 cd00429 RPE Ribulose-5-phospha 70.9 92 0.002 29.8 12.8 88 243-345 16-113 (211)
201 PRK07695 transcriptional regul 70.9 19 0.0004 35.0 8.0 69 242-316 105-184 (201)
202 PRK05437 isopentenyl pyrophosp 70.8 1E+02 0.0022 33.1 14.1 32 337-383 261-292 (352)
203 PRK00278 trpC indole-3-glycero 70.7 78 0.0017 32.4 12.8 107 241-380 71-187 (260)
204 COG2070 Dioxygenases related t 70.5 60 0.0013 34.7 12.3 117 239-380 90-213 (336)
205 cd00408 DHDPS-like Dihydrodipi 70.4 54 0.0012 33.3 11.6 98 242-343 21-129 (281)
206 PRK08673 3-deoxy-7-phosphohept 70.3 64 0.0014 34.6 12.4 155 209-382 119-299 (335)
207 cd07939 DRE_TIM_NifV Streptomy 70.2 1.3E+02 0.0028 30.5 16.6 137 236-386 16-163 (259)
208 KOG4175|consensus 70.2 70 0.0015 32.2 11.5 141 234-402 105-248 (268)
209 PLN00011 cysteine synthase 70.1 53 0.0012 34.5 11.8 121 329-471 84-211 (323)
210 PRK08639 threonine dehydratase 70.1 43 0.00092 36.7 11.4 119 329-471 88-216 (420)
211 PRK08227 autoinducer 2 aldolas 69.9 1.4E+02 0.0031 30.9 16.5 133 296-456 48-189 (264)
212 TIGR02708 L_lactate_ox L-lacta 69.8 13 0.00029 40.1 7.2 94 242-339 239-348 (367)
213 cd04737 LOX_like_FMN L-Lactate 69.8 25 0.00053 37.9 9.2 94 242-339 232-341 (351)
214 TIGR00977 LeuA_rel 2-isopropyl 69.8 1E+02 0.0022 35.1 14.5 155 236-398 19-195 (526)
215 cd00564 TMP_TenI Thiamine mono 69.7 97 0.0021 28.9 12.5 106 245-380 65-178 (196)
216 cd04736 MDH_FMN Mandelate dehy 69.5 49 0.0011 35.8 11.4 37 335-386 287-323 (361)
217 PRK06381 threonine synthase; V 69.4 53 0.0011 34.2 11.5 120 329-471 78-209 (319)
218 PRK08638 threonine dehydratase 69.2 52 0.0011 34.9 11.5 118 329-471 90-212 (333)
219 TIGR01137 cysta_beta cystathio 69.2 43 0.00093 36.6 11.2 121 329-471 77-207 (454)
220 PRK06382 threonine dehydratase 69.1 48 0.001 36.0 11.5 119 329-472 88-211 (406)
221 PRK08385 nicotinate-nucleotide 69.1 20 0.00043 37.4 8.1 65 241-310 191-260 (278)
222 cd03332 LMO_FMN L-Lactate 2-mo 69.0 55 0.0012 35.7 11.7 95 263-386 241-342 (383)
223 cd00381 IMPDH IMPDH: The catal 68.5 8.9 0.00019 40.6 5.5 48 56-104 84-132 (325)
224 PRK02506 dihydroorotate dehydr 68.1 1.1E+02 0.0024 32.2 13.5 69 321-404 223-293 (310)
225 TIGR01302 IMP_dehydrog inosine 68.0 8.3 0.00018 42.6 5.4 46 57-103 215-261 (450)
226 cd00405 PRAI Phosphoribosylant 67.8 79 0.0017 30.7 11.7 109 245-380 66-181 (203)
227 PLN02565 cysteine synthase 67.7 44 0.00095 35.3 10.5 120 329-471 82-209 (322)
228 PRK00043 thiE thiamine-phospha 67.6 55 0.0012 31.5 10.5 103 241-380 23-131 (212)
229 TIGR01361 DAHP_synth_Bsub phos 67.5 33 0.00073 35.2 9.3 91 264-380 75-166 (260)
230 cd02808 GltS_FMN Glutamate syn 67.5 14 0.0003 40.2 6.8 99 241-355 226-348 (392)
231 PF00701 DHDPS: Dihydrodipicol 67.4 87 0.0019 32.1 12.4 98 242-343 25-133 (289)
232 PRK05718 keto-hydroxyglutarate 67.2 26 0.00056 35.0 8.2 38 327-380 98-135 (212)
233 PRK06852 aldolase; Validated 67.2 60 0.0013 34.4 11.2 73 364-442 119-205 (304)
234 TIGR00683 nanA N-acetylneurami 67.2 70 0.0015 33.1 11.7 98 242-343 24-134 (290)
235 cd04724 Tryptophan_synthase_al 67.0 97 0.0021 31.3 12.5 99 234-343 10-135 (242)
236 PLN02979 glycolate oxidase 67.0 60 0.0013 35.2 11.4 35 337-386 278-312 (366)
237 TIGR00735 hisF imidazoleglycer 66.6 1.5E+02 0.0033 30.0 14.1 118 240-380 84-229 (254)
238 PF03102 NeuB: NeuB family; I 66.5 46 0.00099 34.0 9.9 76 280-379 69-145 (241)
239 PRK13397 3-deoxy-7-phosphohept 66.5 46 0.001 34.2 10.0 133 232-380 78-219 (250)
240 TIGR03586 PseI pseudaminic aci 66.5 70 0.0015 34.1 11.7 75 280-379 90-167 (327)
241 PRK07226 fructose-bisphosphate 66.3 68 0.0015 32.8 11.3 112 220-342 17-144 (267)
242 cd01485 E1-1_like Ubiquitin ac 66.2 28 0.0006 34.1 8.1 68 267-344 77-145 (198)
243 PRK04180 pyridoxal biosynthesi 65.9 57 0.0012 34.3 10.6 108 259-402 58-173 (293)
244 cd04731 HisF The cyclase subun 65.9 1.5E+02 0.0031 29.6 13.4 118 241-380 82-223 (243)
245 COG1646 Predicted phosphate-bi 65.9 16 0.00035 37.2 6.4 85 284-396 19-119 (240)
246 TIGR03239 GarL 2-dehydro-3-deo 65.8 43 0.00094 34.2 9.7 93 270-386 3-97 (249)
247 PRK06552 keto-hydroxyglutarate 65.8 56 0.0012 32.6 10.3 40 325-380 97-136 (213)
248 cd04723 HisA_HisF Phosphoribos 65.7 1.2E+02 0.0026 30.4 12.7 117 241-380 89-218 (233)
249 PRK11761 cysM cysteine synthas 65.4 81 0.0018 32.8 11.8 120 329-471 78-204 (296)
250 cd00331 IGPS Indole-3-glycerol 65.0 1.1E+02 0.0024 29.9 12.1 113 238-384 29-151 (217)
251 TIGR03249 KdgD 5-dehydro-4-deo 64.9 68 0.0015 33.2 11.2 96 242-343 29-136 (296)
252 PRK13396 3-deoxy-7-phosphohept 64.9 31 0.00068 37.2 8.8 86 280-381 208-307 (352)
253 cd02801 DUS_like_FMN Dihydrour 64.9 1.4E+02 0.0031 29.1 13.8 118 244-380 72-213 (231)
254 PRK07476 eutB threonine dehydr 64.6 70 0.0015 33.6 11.3 119 328-471 81-204 (322)
255 TIGR00259 thylakoid_BtpA membr 64.5 1.1E+02 0.0024 31.6 12.3 115 241-380 91-227 (257)
256 TIGR02356 adenyl_thiF thiazole 64.4 28 0.00062 34.0 7.8 67 266-343 76-142 (202)
257 PRK15116 sulfur acceptor prote 64.3 21 0.00045 37.0 7.1 86 266-370 85-173 (268)
258 cd00952 CHBPH_aldolase Trans-o 64.1 72 0.0016 33.4 11.2 98 242-343 32-141 (309)
259 PRK10717 cysteine synthase A; 63.9 70 0.0015 33.6 11.1 123 329-471 79-213 (330)
260 cd04501 SGNH_hydrolase_like_4 63.5 28 0.00061 32.4 7.4 58 292-352 47-108 (183)
261 COG0821 gcpE 1-hydroxy-2-methy 63.1 1.2E+02 0.0027 32.5 12.5 90 242-343 39-129 (361)
262 TIGR01127 ilvA_1Cterm threonin 63.1 63 0.0014 34.6 10.8 119 329-472 63-186 (380)
263 PLN02535 glycolate oxidase 63.0 99 0.0021 33.6 12.1 99 262-386 210-312 (364)
264 PRK06815 hypothetical protein; 62.9 68 0.0015 33.5 10.8 119 329-472 83-206 (317)
265 cd00452 KDPG_aldolase KDPG and 62.8 84 0.0018 30.3 10.7 102 241-380 65-171 (190)
266 PRK09224 threonine dehydratase 62.7 72 0.0016 35.9 11.5 118 329-471 83-206 (504)
267 cd03174 DRE_TIM_metallolyase D 62.4 1.2E+02 0.0027 30.1 12.2 121 242-379 77-221 (265)
268 PRK06843 inosine 5-monophospha 62.3 11 0.00024 41.3 4.8 48 55-103 142-190 (404)
269 PRK05458 guanosine 5'-monophos 62.2 12 0.00026 39.8 5.0 47 56-103 85-136 (326)
270 PRK06015 keto-hydroxyglutarate 62.2 66 0.0014 32.0 9.9 103 245-380 22-124 (201)
271 PRK13587 1-(5-phosphoribosyl)- 62.1 1.6E+02 0.0034 29.7 12.8 119 240-380 86-221 (234)
272 PRK09389 (R)-citramalate synth 62.0 2.6E+02 0.0057 31.4 15.7 138 236-386 20-167 (488)
273 TIGR01306 GMP_reduct_2 guanosi 61.8 14 0.00031 39.3 5.5 47 56-103 84-133 (321)
274 PTZ00314 inosine-5'-monophosph 61.8 10 0.00022 42.5 4.7 44 60-104 235-279 (495)
275 PF00677 Lum_binding: Lumazine 61.7 30 0.00065 29.4 6.5 57 170-227 18-82 (85)
276 cd04733 OYE_like_2_FMN Old yel 61.5 2.2E+02 0.0048 30.1 14.6 32 335-380 290-322 (338)
277 PRK07998 gatY putative fructos 61.4 1.6E+02 0.0036 30.8 13.1 123 235-401 2-126 (283)
278 cd00953 KDG_aldolase KDG (2-ke 61.4 1.1E+02 0.0023 31.6 11.7 94 242-343 23-127 (279)
279 COG0159 TrpA Tryptophan syntha 61.2 1.6E+02 0.0035 30.6 12.8 115 244-380 114-233 (265)
280 cd05565 PTS_IIB_lactose PTS_II 61.0 41 0.00088 29.7 7.3 66 262-342 12-77 (99)
281 cd02809 alpha_hydroxyacid_oxid 60.8 37 0.00081 35.3 8.3 69 242-314 183-261 (299)
282 PRK11858 aksA trans-homoaconit 60.7 1.6E+02 0.0034 31.9 13.3 99 241-345 77-196 (378)
283 cd02922 FCB2_FMN Flavocytochro 60.7 40 0.00088 36.1 8.7 94 242-339 224-336 (344)
284 TIGR00737 nifR3_yhdG putative 60.5 1.7E+02 0.0037 30.6 13.3 118 245-380 81-222 (319)
285 COG0167 PyrD Dihydroorotate de 60.4 83 0.0018 33.4 10.8 146 238-403 107-292 (310)
286 cd01573 modD_like ModD; Quinol 59.9 23 0.0005 36.7 6.5 66 240-310 191-259 (272)
287 TIGR02079 THD1 threonine dehyd 59.9 84 0.0018 34.3 11.2 119 329-471 79-205 (409)
288 TIGR00259 thylakoid_BtpA membr 59.8 71 0.0015 33.0 9.9 88 237-327 154-250 (257)
289 PRK12595 bifunctional 3-deoxy- 59.7 53 0.0011 35.5 9.4 90 265-380 169-259 (360)
290 cd07947 DRE_TIM_Re_CS Clostrid 59.5 2.2E+02 0.0047 29.7 13.6 111 239-355 21-143 (279)
291 PF01645 Glu_synthase: Conserv 59.5 9.1 0.0002 41.4 3.6 101 239-355 213-337 (368)
292 PRK02083 imidazole glycerol ph 59.5 44 0.00096 33.7 8.4 161 333-516 70-249 (253)
293 PRK07428 nicotinate-nucleotide 59.3 44 0.00095 35.1 8.5 66 240-310 204-272 (288)
294 cd00755 YgdL_like Family of ac 59.3 33 0.00071 34.7 7.4 79 266-355 66-147 (231)
295 PLN02746 hydroxymethylglutaryl 59.2 2.2E+02 0.0047 30.7 13.9 137 237-386 65-221 (347)
296 PLN02274 inosine-5'-monophosph 59.0 15 0.00034 41.3 5.5 47 56-103 238-285 (505)
297 PF01081 Aldolase: KDPG and KH 58.9 72 0.0016 31.6 9.5 103 245-380 26-128 (196)
298 PRK09250 fructose-bisphosphate 58.9 75 0.0016 34.3 10.2 121 213-342 55-197 (348)
299 PRK08198 threonine dehydratase 58.9 1.3E+02 0.0027 32.6 12.3 119 329-472 85-208 (404)
300 cd00408 DHDPS-like Dihydrodipi 58.7 72 0.0016 32.5 9.9 84 303-400 32-123 (281)
301 PRK10737 FKBP-type peptidyl-pr 58.7 23 0.0005 35.1 6.0 62 149-210 50-118 (196)
302 PRK11197 lldD L-lactate dehydr 58.5 1.1E+02 0.0023 33.5 11.6 95 263-386 233-334 (381)
303 cd01492 Aos1_SUMO Ubiquitin ac 58.4 57 0.0012 31.9 8.7 66 267-344 77-142 (197)
304 cd01487 E1_ThiF_like E1_ThiF_l 58.1 44 0.00095 32.0 7.7 67 267-344 54-121 (174)
305 TIGR02991 ectoine_eutB ectoine 58.0 1.1E+02 0.0024 32.1 11.4 117 329-470 82-203 (317)
306 cd00564 TMP_TenI Thiamine mono 57.9 38 0.00082 31.8 7.2 65 243-313 106-182 (196)
307 PF01729 QRPTase_C: Quinolinat 57.1 19 0.00042 34.6 5.1 64 242-310 90-156 (169)
308 TIGR00739 yajC preprotein tran 57.1 18 0.00038 31.0 4.3 42 179-220 32-73 (84)
309 PF01645 Glu_synthase: Conserv 56.9 57 0.0012 35.4 9.1 150 207-380 136-303 (368)
310 cd04735 OYE_like_4_FMN Old yel 56.8 89 0.0019 33.3 10.6 130 235-380 132-313 (353)
311 PF00582 Usp: Universal stress 56.7 28 0.00062 29.6 5.7 43 424-467 88-139 (140)
312 TIGR01949 AroFGH_arch predicte 56.7 1.1E+02 0.0024 31.0 10.8 113 221-342 15-141 (258)
313 COG0826 Collagenase and relate 56.5 55 0.0012 35.2 8.8 87 292-386 15-104 (347)
314 PRK05848 nicotinate-nucleotide 56.3 47 0.001 34.5 8.1 67 241-310 191-258 (273)
315 TIGR00736 nifR3_rel_arch TIM-b 56.2 45 0.00099 33.8 7.8 73 242-318 151-229 (231)
316 TIGR02313 HpaI-NOT-DapA 2,4-di 56.2 1.3E+02 0.0028 31.2 11.4 98 242-343 24-133 (294)
317 cd00757 ThiF_MoeB_HesA_family 56.2 48 0.001 33.0 7.9 67 266-343 76-142 (228)
318 PRK13209 L-xylulose 5-phosphat 55.9 1.8E+02 0.0039 29.4 12.2 41 242-282 24-74 (283)
319 cd07944 DRE_TIM_HOA_like 4-hyd 55.9 2E+02 0.0043 29.5 12.5 99 240-345 83-191 (266)
320 PRK08246 threonine dehydratase 55.8 1.4E+02 0.0031 31.1 11.7 118 329-471 83-202 (310)
321 PRK00748 1-(5-phosphoribosyl)- 55.8 2.1E+02 0.0046 28.1 12.9 119 240-380 84-220 (233)
322 cd04727 pdxS PdxS is a subunit 55.7 2.4E+02 0.0053 29.6 13.0 128 242-403 18-165 (283)
323 TIGR02355 moeB molybdopterin s 55.4 51 0.0011 33.4 8.0 68 266-344 79-146 (240)
324 cd08567 GDPD_SpGDE_like Glycer 55.4 78 0.0017 31.6 9.4 42 324-380 218-259 (263)
325 TIGR00853 pts-lac PTS system, 54.9 66 0.0014 27.9 7.6 63 266-343 19-81 (95)
326 PRK11750 gltB glutamate syntha 54.9 41 0.00089 42.5 8.4 151 207-380 929-1096(1485)
327 PF05690 ThiG: Thiazole biosyn 54.9 30 0.00065 35.4 6.1 52 333-401 171-226 (247)
328 PLN02493 probable peroxisomal 54.7 1.3E+02 0.0029 32.7 11.4 35 337-386 279-313 (367)
329 PRK10128 2-keto-3-deoxy-L-rham 54.7 1.3E+02 0.0028 31.1 11.0 93 270-386 9-103 (267)
330 COG1440 CelA Phosphotransferas 54.6 75 0.0016 28.4 7.8 65 263-342 14-78 (102)
331 PRK07114 keto-hydroxyglutarate 54.2 94 0.002 31.3 9.6 39 326-380 101-139 (222)
332 PRK07084 fructose-bisphosphate 54.1 2.3E+02 0.005 30.3 12.8 126 234-400 7-136 (321)
333 PF01261 AP_endonuc_2: Xylose 54.0 53 0.0012 30.8 7.6 99 245-343 1-131 (213)
334 PF01791 DeoC: DeoC/LacD famil 53.9 1.3E+02 0.0028 29.9 10.6 156 235-400 13-189 (236)
335 cd07944 DRE_TIM_HOA_like 4-hyd 53.7 2.7E+02 0.0058 28.6 15.0 131 236-386 16-162 (266)
336 PRK12756 phospho-2-dehydro-3-d 53.4 89 0.0019 33.7 9.6 161 269-465 41-231 (348)
337 TIGR00010 hydrolase, TatD fami 53.3 1.4E+02 0.0031 29.1 10.7 101 241-345 16-129 (252)
338 cd08556 GDPD Glycerophosphodie 53.2 1.1E+02 0.0023 28.5 9.5 40 325-379 148-187 (189)
339 PLN02550 threonine dehydratase 53.1 1E+02 0.0022 35.6 10.7 119 329-472 172-296 (591)
340 KOG2550|consensus 53.1 20 0.00044 39.3 4.8 45 59-104 244-289 (503)
341 PRK08195 4-hyroxy-2-oxovalerat 52.8 2.7E+02 0.0059 29.7 13.4 98 242-345 91-197 (337)
342 PLN02535 glycolate oxidase 52.8 38 0.00081 36.7 6.9 69 242-314 234-312 (364)
343 TIGR00126 deoC deoxyribose-pho 52.7 1.2E+02 0.0026 30.2 10.1 145 235-398 13-174 (211)
344 PF00682 HMGL-like: HMGL-like 52.6 2.4E+02 0.0052 27.8 14.9 139 237-386 11-161 (237)
345 PRK09856 fructoselysine 3-epim 52.4 1.6E+02 0.0034 29.6 11.1 101 242-342 16-147 (275)
346 PRK13210 putative L-xylulose 5 52.4 1.2E+02 0.0026 30.4 10.3 101 242-342 19-151 (284)
347 PRK03910 D-cysteine desulfhydr 52.3 3E+02 0.0066 28.8 15.3 43 429-471 169-220 (331)
348 PRK08644 thiamine biosynthesis 52.2 61 0.0013 32.1 7.9 67 267-344 83-150 (212)
349 TIGR03528 2_3_DAP_am_ly diamin 52.1 1.5E+02 0.0032 32.4 11.4 120 329-470 128-263 (396)
350 cd01568 QPRTase_NadC Quinolina 51.9 50 0.0011 34.1 7.4 64 240-309 189-255 (269)
351 PRK07591 threonine synthase; V 51.8 2.1E+02 0.0046 31.3 12.7 119 329-471 152-284 (421)
352 PRK13802 bifunctional indole-3 51.7 3.6E+02 0.0078 31.9 15.0 74 240-318 168-249 (695)
353 COG1830 FbaB DhnA-type fructos 51.6 1.7E+02 0.0037 30.5 11.0 166 270-465 13-206 (265)
354 KOG2178|consensus 51.5 14 0.0003 40.2 3.4 78 436-529 283-375 (409)
355 PRK07048 serine/threonine dehy 51.5 1.3E+02 0.0028 31.5 10.6 118 329-471 87-209 (321)
356 PRK08526 threonine dehydratase 51.4 1.3E+02 0.0028 32.9 10.9 119 329-472 83-206 (403)
357 PF02599 CsrA: Global regulato 51.2 36 0.00077 26.9 4.8 30 185-214 6-35 (54)
358 PRK14024 phosphoribosyl isomer 51.2 2.4E+02 0.0051 28.4 12.1 119 240-380 85-222 (241)
359 cd02929 TMADH_HD_FMN Trimethyl 51.1 1.6E+02 0.0035 31.7 11.5 132 235-380 138-319 (370)
360 cd00959 DeoC 2-deoxyribose-5-p 51.1 1E+02 0.0022 30.2 9.1 143 235-397 12-172 (203)
361 PRK15005 universal stress prot 51.0 34 0.00074 30.5 5.4 41 426-467 95-143 (144)
362 PRK02615 thiamine-phosphate py 51.0 51 0.0011 35.4 7.6 72 237-314 245-327 (347)
363 PRK15447 putative protease; Pr 50.9 53 0.0012 34.3 7.6 67 303-380 29-95 (301)
364 PRK05690 molybdopterin biosynt 50.9 63 0.0014 32.7 7.9 67 266-343 87-153 (245)
365 PF10087 DUF2325: Uncharacteri 50.6 72 0.0016 27.4 7.2 70 265-343 10-81 (97)
366 cd07939 DRE_TIM_NifV Streptomy 50.5 2.8E+02 0.0061 28.0 12.6 121 241-378 71-212 (259)
367 COG0329 DapA Dihydrodipicolina 50.4 1.9E+02 0.004 30.3 11.5 98 242-343 28-136 (299)
368 PRK08255 salicylyl-CoA 5-hydro 50.4 89 0.0019 37.0 10.1 131 236-380 540-717 (765)
369 PRK12290 thiE thiamine-phospha 50.1 1.6E+02 0.0034 32.8 11.2 110 245-380 270-392 (437)
370 PF01070 FMN_dh: FMN-dependent 50.0 1.8E+02 0.0038 31.4 11.5 109 263-398 213-333 (356)
371 TIGR01362 KDO8P_synth 3-deoxy- 50.0 80 0.0017 32.7 8.4 134 231-379 71-220 (258)
372 PRK02615 thiamine-phosphate py 50.0 1.4E+02 0.003 32.2 10.6 103 245-380 210-322 (347)
373 cd02933 OYE_like_FMN Old yello 49.9 2E+02 0.0044 30.6 11.9 125 235-380 140-314 (338)
374 cd00947 TBP_aldolase_IIB Tagat 49.8 3.2E+02 0.007 28.5 13.1 116 243-400 3-120 (276)
375 PRK05638 threonine synthase; V 49.4 1E+02 0.0023 33.9 9.9 116 329-469 127-252 (442)
376 TIGR00693 thiE thiamine-phosph 49.3 2.4E+02 0.0052 26.8 11.5 102 241-380 15-123 (196)
377 cd04724 Tryptophan_synthase_al 49.2 2.9E+02 0.0064 27.8 14.1 118 242-380 94-215 (242)
378 cd02812 PcrB_like PcrB_like pr 49.1 42 0.0009 33.8 6.1 61 294-380 15-77 (219)
379 cd04728 ThiG Thiazole synthase 49.1 2.9E+02 0.0062 28.6 12.1 50 336-402 174-227 (248)
380 TIGR01361 DAHP_synth_Bsub phos 49.0 1.3E+02 0.0027 31.0 9.8 40 334-382 191-231 (260)
381 PRK04169 geranylgeranylglycery 48.8 66 0.0014 32.7 7.6 56 297-379 26-82 (232)
382 PLN02979 glycolate oxidase 48.8 95 0.0021 33.7 9.1 94 241-338 233-342 (366)
383 COG2022 ThiG Uncharacterized e 48.5 40 0.00086 34.5 5.8 51 334-401 179-233 (262)
384 cd02911 arch_FMN Archeal FMN-b 48.4 64 0.0014 32.5 7.4 63 242-311 155-222 (233)
385 cd06448 L-Ser-dehyd Serine deh 48.3 1.3E+02 0.0028 31.5 10.0 120 329-471 66-194 (316)
386 PRK05742 nicotinate-nucleotide 48.1 69 0.0015 33.4 7.7 62 240-309 197-261 (277)
387 cd02911 arch_FMN Archeal FMN-b 48.0 2E+02 0.0042 29.0 10.8 31 336-380 190-220 (233)
388 PRK09140 2-dehydro-3-deoxy-6-p 47.8 1.2E+02 0.0027 29.9 9.2 85 242-331 114-201 (206)
389 cd04743 NPD_PKS 2-Nitropropane 47.8 3.8E+02 0.0082 28.7 13.4 114 242-380 72-202 (320)
390 PRK05567 inosine 5'-monophosph 47.6 36 0.00078 38.0 6.0 49 54-103 216-265 (486)
391 PRK09195 gatY tagatose-bisphos 47.6 2.9E+02 0.0064 28.9 12.3 115 244-400 9-125 (284)
392 PRK05198 2-dehydro-3-deoxyphos 47.5 76 0.0017 32.9 7.8 134 231-379 79-228 (264)
393 PTZ00344 pyridoxal kinase; Pro 47.4 1.4E+02 0.0031 30.8 10.0 112 232-344 52-182 (296)
394 PRK13523 NADPH dehydrogenase N 47.4 93 0.002 33.2 8.8 126 236-380 131-305 (337)
395 cd01572 QPRTase Quinolinate ph 47.2 47 0.001 34.3 6.3 63 240-310 190-255 (268)
396 TIGR00674 dapA dihydrodipicoli 47.0 93 0.002 32.0 8.6 86 303-401 33-125 (285)
397 TIGR00196 yjeF_cterm yjeF C-te 47.0 1.1E+02 0.0025 31.0 9.1 88 238-342 37-124 (272)
398 TIGR01037 pyrD_sub1_fam dihydr 47.0 3.4E+02 0.0074 27.9 14.5 143 223-380 6-189 (300)
399 PRK07455 keto-hydroxyglutarate 47.0 1.7E+02 0.0038 28.3 10.0 105 242-380 27-132 (187)
400 PRK04885 ppnK inorganic polyph 46.9 22 0.00048 36.7 3.9 54 436-491 145-203 (265)
401 TIGR01303 IMP_DH_rel_1 IMP deh 46.7 28 0.00061 38.9 5.0 46 57-103 216-262 (475)
402 PF13407 Peripla_BP_4: Peripla 46.6 63 0.0014 31.5 7.0 66 270-345 20-88 (257)
403 COG0069 GltB Glutamate synthas 46.5 87 0.0019 35.2 8.6 151 207-380 236-403 (485)
404 PRK08999 hypothetical protein; 46.4 47 0.001 34.3 6.4 67 237-309 231-308 (312)
405 PLN02493 probable peroxisomal 46.4 1.1E+02 0.0023 33.4 9.1 94 241-338 234-343 (367)
406 PRK00208 thiG thiazole synthas 46.3 3.4E+02 0.0073 28.1 12.1 50 336-402 174-227 (250)
407 PRK07896 nicotinate-nucleotide 46.3 81 0.0018 33.1 8.0 65 241-310 208-275 (289)
408 PRK11197 lldD L-lactate dehydr 46.3 51 0.0011 35.9 6.7 95 241-339 255-365 (381)
409 PRK00507 deoxyribose-phosphate 46.2 2E+02 0.0042 29.0 10.4 142 235-396 17-176 (221)
410 PF01207 Dus: Dihydrouridine s 45.8 48 0.001 34.8 6.3 70 240-315 139-219 (309)
411 PF00701 DHDPS: Dihydrodipicol 45.8 96 0.0021 31.8 8.5 95 295-402 27-129 (289)
412 cd00954 NAL N-Acetylneuraminic 45.8 97 0.0021 31.9 8.5 91 295-399 26-126 (288)
413 PRK12475 thiamine/molybdopteri 45.8 80 0.0017 33.7 8.0 67 266-343 81-147 (338)
414 cd04731 HisF The cyclase subun 45.6 1E+02 0.0022 30.7 8.4 77 242-323 152-237 (243)
415 cd00952 CHBPH_aldolase Trans-o 45.4 1.2E+02 0.0027 31.7 9.3 91 297-400 36-134 (309)
416 TIGR00735 hisF imidazoleglycer 45.4 1E+02 0.0022 31.2 8.5 87 242-340 158-253 (254)
417 cd01563 Thr-synth_1 Threonine 45.4 2.5E+02 0.0055 29.1 11.6 117 329-471 85-214 (324)
418 PLN02556 cysteine synthase/L-3 45.3 1.4E+02 0.0029 32.3 9.8 122 329-472 126-254 (368)
419 cd00019 AP2Ec AP endonuclease 45.3 1.3E+02 0.0029 30.3 9.4 101 242-342 13-141 (279)
420 TIGR00034 aroFGH phospho-2-deh 45.2 1.1E+02 0.0025 32.9 9.0 94 269-373 37-158 (344)
421 PRK09289 riboflavin synthase s 45.2 1.3E+02 0.0027 29.8 8.7 77 150-227 74-180 (194)
422 PRK00568 carbon storage regula 44.9 48 0.001 28.1 4.9 29 185-213 6-34 (76)
423 COG2145 ThiM Hydroxyethylthiaz 44.8 42 0.00092 34.7 5.5 47 291-342 44-90 (265)
424 PRK01712 carbon storage regula 44.7 57 0.0012 26.8 5.1 30 184-213 5-34 (64)
425 PRK05692 hydroxymethylglutaryl 44.7 3.8E+02 0.0083 27.8 14.6 139 237-386 23-179 (287)
426 cd02931 ER_like_FMN Enoate red 44.6 3.5E+02 0.0076 29.3 12.8 26 235-260 138-171 (382)
427 COG0036 Rpe Pentose-5-phosphat 44.6 2.7E+02 0.0058 28.3 11.0 64 242-308 74-137 (220)
428 PRK05597 molybdopterin biosynt 44.6 88 0.0019 33.5 8.2 67 266-343 83-149 (355)
429 TIGR01768 GGGP-family geranylg 44.4 68 0.0015 32.4 6.8 63 291-380 15-78 (223)
430 PRK06110 hypothetical protein; 44.4 2.5E+02 0.0054 29.4 11.4 117 329-471 85-206 (322)
431 cd06449 ACCD Aminocyclopropane 44.3 2.8E+02 0.0061 28.7 11.7 45 427-471 158-211 (307)
432 PF01136 Peptidase_U32: Peptid 44.1 48 0.001 32.7 5.7 42 66-108 157-199 (233)
433 cd03332 LMO_FMN L-Lactate 2-mo 44.1 95 0.002 33.9 8.3 92 241-339 263-373 (383)
434 PRK09989 hypothetical protein; 43.9 3.1E+02 0.0068 27.3 11.7 56 222-283 3-58 (258)
435 PRK14057 epimerase; Provisiona 43.6 3.9E+02 0.0085 27.6 15.4 68 238-308 84-160 (254)
436 PRK13398 3-deoxy-7-phosphohept 43.5 1.6E+02 0.0034 30.5 9.5 108 246-379 48-167 (266)
437 TIGR03844 cysteate_syn cysteat 43.5 1.9E+02 0.004 31.7 10.6 89 420-517 98-190 (398)
438 PRK12737 gatY tagatose-bisphos 43.5 3.7E+02 0.008 28.1 12.3 115 244-400 9-125 (284)
439 cd00959 DeoC 2-deoxyribose-5-p 43.5 2.5E+02 0.0054 27.4 10.6 76 364-451 73-155 (203)
440 PRK01130 N-acetylmannosamine-6 43.4 72 0.0016 31.3 6.9 65 242-311 129-204 (221)
441 PRK07107 inosine 5-monophospha 43.3 38 0.00081 38.2 5.3 48 54-103 231-279 (502)
442 cd04729 NanE N-acetylmannosami 43.1 78 0.0017 31.1 7.0 64 243-311 134-208 (219)
443 TIGR01370 cysRS possible cyste 43.1 1.9E+02 0.0041 30.8 10.2 92 245-342 153-269 (315)
444 COG1892 Phosphoenolpyruvate ca 43.0 53 0.0011 36.5 6.1 91 251-341 123-246 (488)
445 KOG0538|consensus 43.0 79 0.0017 33.7 7.2 65 243-311 235-309 (363)
446 TIGR01747 diampropi_NH3ly diam 42.9 3E+02 0.0065 29.8 12.0 126 328-471 108-245 (376)
447 TIGR02317 prpB methylisocitrat 42.8 4.2E+02 0.0091 27.8 14.0 133 243-399 92-247 (285)
448 TIGR00187 ribE riboflavin synt 42.8 67 0.0015 31.9 6.4 57 171-228 21-85 (200)
449 PRK08223 hypothetical protein; 42.6 1.2E+02 0.0026 31.8 8.6 68 267-343 83-150 (287)
450 PRK01033 imidazole glycerol ph 42.6 3.8E+02 0.0083 27.2 12.5 119 241-380 85-226 (258)
451 PLN02741 riboflavin synthase 42.6 89 0.0019 30.9 7.2 56 172-228 23-85 (194)
452 PRK09261 phospho-2-dehydro-3-d 42.4 1.4E+02 0.0031 32.2 9.2 161 268-464 41-231 (349)
453 COG0061 nadF NAD kinase [Coenz 42.3 25 0.00054 36.5 3.5 36 436-471 163-202 (281)
454 COG1047 SlpA FKBP-type peptidy 42.3 54 0.0012 32.0 5.5 77 148-227 50-133 (174)
455 PRK14852 hypothetical protein; 42.0 1E+02 0.0022 37.8 8.8 71 266-345 387-457 (989)
456 PF00532 Peripla_BP_1: Peripla 42.0 3.9E+02 0.0084 27.1 13.4 80 255-346 5-88 (279)
457 PRK11840 bifunctional sulfur c 41.9 1.9E+02 0.0042 31.0 10.0 78 305-401 221-300 (326)
458 PRK06721 threonine synthase; R 41.8 4.2E+02 0.009 28.2 12.8 118 329-472 90-219 (352)
459 KOG0538|consensus 41.7 1.5E+02 0.0031 31.8 8.8 107 249-386 194-312 (363)
460 PRK13396 3-deoxy-7-phosphohept 41.2 1.8E+02 0.0039 31.5 9.8 89 266-380 153-242 (352)
461 PRK02412 aroD 3-dehydroquinate 41.1 2.9E+02 0.0064 28.0 11.0 137 227-380 15-172 (253)
462 cd01483 E1_enzyme_family Super 40.9 1.4E+02 0.0029 27.1 7.8 68 266-344 54-121 (143)
463 cd05017 SIS_PGI_PMI_1 The memb 40.8 35 0.00076 30.2 3.8 51 438-490 43-98 (119)
464 PRK14847 hypothetical protein; 40.7 4.9E+02 0.011 28.0 14.5 148 236-397 50-233 (333)
465 PRK09427 bifunctional indole-3 40.7 89 0.0019 34.9 7.6 111 240-379 167-283 (454)
466 cd01987 USP_OKCHK USP domain i 40.7 60 0.0013 28.1 5.3 43 425-467 72-123 (124)
467 PRK06552 keto-hydroxyglutarate 40.6 3.8E+02 0.0083 26.7 11.5 103 241-380 77-183 (213)
468 cd02930 DCR_FMN 2,4-dienoyl-Co 40.6 4.1E+02 0.009 28.2 12.5 131 236-380 126-306 (353)
469 PRK08328 hypothetical protein; 40.3 1.2E+02 0.0026 30.4 7.9 63 270-343 87-149 (231)
470 PF00682 HMGL-like: HMGL-like 40.3 3.7E+02 0.0081 26.4 11.6 128 237-380 64-213 (237)
471 PRK00286 xseA exodeoxyribonucl 40.2 5.3E+02 0.012 28.2 14.4 38 303-344 193-231 (438)
472 TIGR01769 GGGP geranylgeranylg 40.1 79 0.0017 31.5 6.5 51 303-380 25-76 (205)
473 PRK10017 colanic acid biosynth 40.1 1.7E+02 0.0037 32.3 9.7 85 293-392 108-194 (426)
474 TIGR02660 nifV_homocitr homoci 40.0 3.7E+02 0.008 28.8 12.1 99 241-345 74-193 (365)
475 TIGR01210 conserved hypothetic 40.0 1.6E+02 0.0034 31.0 9.1 27 55-81 104-130 (313)
476 PRK14040 oxaloacetate decarbox 40.0 5.7E+02 0.012 29.7 14.1 122 242-379 100-229 (593)
477 PRK05585 yajC preprotein trans 39.9 44 0.00096 29.9 4.2 42 179-220 47-88 (106)
478 PLN02826 dihydroorotate dehydr 39.8 1.5E+02 0.0033 32.6 9.2 98 235-338 271-397 (409)
479 PRK05886 yajC preprotein trans 39.7 45 0.00097 30.1 4.2 41 180-220 34-74 (109)
480 TIGR01108 oadA oxaloacetate de 39.7 5.4E+02 0.012 29.8 13.9 123 241-379 93-223 (582)
481 PRK07709 fructose-bisphosphate 39.6 4.7E+02 0.01 27.4 13.1 125 234-402 1-130 (285)
482 cd02801 DUS_like_FMN Dihydrour 39.6 87 0.0019 30.6 6.7 72 240-314 139-218 (231)
483 cd08579 GDPD_memb_like Glycero 39.5 1.5E+02 0.0033 28.8 8.5 40 325-379 178-217 (220)
484 PRK00125 pyrF orotidine 5'-pho 39.4 3.4E+02 0.0074 28.3 11.3 128 325-465 74-216 (278)
485 PF02219 MTHFR: Methylenetetra 39.3 73 0.0016 32.9 6.4 70 239-309 159-228 (287)
486 COG0352 ThiE Thiamine monophos 38.9 2.6E+02 0.0057 28.0 10.0 103 245-380 74-186 (211)
487 TIGR03217 4OH_2_O_val_ald 4-hy 38.9 5.1E+02 0.011 27.6 13.4 98 242-345 90-196 (333)
488 PRK07315 fructose-bisphosphate 38.7 4.9E+02 0.011 27.3 12.6 102 273-380 70-173 (293)
489 cd06557 KPHMT-like Ketopantoat 38.7 3.7E+02 0.008 27.7 11.3 145 236-399 16-192 (254)
490 PTZ00300 pyruvate kinase; Prov 38.6 4.2E+02 0.0092 29.7 12.5 237 187-490 76-378 (454)
491 KOG2335|consensus 38.5 94 0.002 33.6 7.1 71 240-315 156-239 (358)
492 cd04736 MDH_FMN Mandelate dehy 38.5 88 0.0019 33.9 7.0 67 241-313 246-322 (361)
493 PRK07878 molybdopterin biosynt 38.3 1.2E+02 0.0026 32.9 8.1 66 267-343 98-163 (392)
494 cd08582 GDPD_like_2 Glyceropho 38.2 4E+02 0.0086 26.2 11.3 41 325-380 189-229 (233)
495 PF03932 CutC: CutC family; I 38.2 4.2E+02 0.009 26.4 12.4 139 241-401 9-169 (201)
496 PF02310 B12-binding: B12 bind 38.1 1.1E+02 0.0024 26.4 6.6 72 242-315 41-117 (121)
497 PRK04452 acetyl-CoA decarbonyl 38.0 3.2E+02 0.0068 29.2 10.9 137 239-389 136-305 (319)
498 PRK00561 ppnK inorganic polyph 37.8 33 0.00072 35.4 3.5 36 436-471 134-173 (259)
499 PRK08206 diaminopropionate amm 37.8 2.1E+02 0.0045 31.2 9.8 125 329-471 131-266 (399)
500 TIGR03569 NeuB_NnaB N-acetylne 37.7 3E+02 0.0065 29.4 10.8 70 281-375 90-161 (329)
No 1
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=1.5e-125 Score=1020.69 Aligned_cols=479 Identities=27% Similarity=0.438 Sum_probs=443.4
Q ss_pred hHHHhhhhcCC-CCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhcccc
Q psy6272 35 RYLNHLEQLNL-DSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEE 112 (547)
Q Consensus 35 ~~l~h~~~l~i-~~~~~~~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~ 112 (547)
+.+.|.+.|++ ...+..+|+|||||||||+|+++|+|++|+++|||+|||| |||++|+|.+ +++++|+++++..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~rktKIi~TiGPas~~~e~l~~mi~aGm~v~RlN~SHg~~e~~~~-~i~~vR~~~~~~~--- 94 (513)
T PTZ00066 19 TNISLDKILEPISDNDLRQKKTHIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESHKK-TLNNVREAAKARP--- 94 (513)
T ss_pred cccchhhhccccccCcccCCCCeEEEeeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHH-HHHHHHHHHHhcC---
Confidence 44556666776 4455678999999999999999999999999999999999 9999999999 9999999998741
Q ss_pred ccceeeEEEEecCCCeeeeeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEE
Q psy6272 113 CKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVY 192 (547)
Q Consensus 113 ~~~~~i~I~~Dl~GpkiRtG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~ 192 (547)
+++++|++||+|||||+|.+. ++ .++.|++||.++|+.+.. ..++++.|+++|++|++.+++||+||
T Consensus 95 --~~~iaIl~Dl~GPkiR~g~~~-------~~--~~i~l~~G~~~~l~~~~~--~~~~~~~i~v~~~~l~~~v~~Gd~Il 161 (513)
T PTZ00066 95 --NANLGILLDTKGPEIRTGFLK-------NH--KPITLKEGQTLKITTDYT--FLGDETCISCSYKKLPQSVKVGNIIL 161 (513)
T ss_pred --CCceEEEeeCCCCceeecccC-------CC--CeEEeCCCCEEEEecCCc--cCCCCcEEecchHHHHhhccCCCEEE
Confidence 589999999999999999997 42 369999999999998743 35677899999999999999999999
Q ss_pred Eec-eeEEEEEEEeCCeEEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHH-HHHHHcCCcEEEEcccCChhhHHHH
Q psy6272 193 IDR-NIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVV-DLIVREAVDIIIMSSVTGANSIREM 270 (547)
Q Consensus 193 idD-~I~l~V~~v~~~~v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di-~~~~~~g~d~I~~sfV~sa~di~~~ 270 (547)
+|| +|.|+|.+++++.+.|+|.+||.|+++||+||||+.+++|++|++|++|| +|++++|+|+|++|||++++|++++
T Consensus 162 idDG~i~l~V~~~~~~~v~~~v~~gG~l~~~Kgvnlpg~~~~lp~ltekD~~dI~~f~~~~~vD~IalSFVr~a~DI~~~ 241 (513)
T PTZ00066 162 IADGSLSCKVLEVHDDYIITKVLNNATIGERKNMNLPGVKVELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLC 241 (513)
T ss_pred EeCCEEEEEEEEEECCEEEEEEEeCcEEcCCcccccCCCccCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 999 99999999999999999999999999999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC--
Q psy6272 271 RGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP-- 348 (547)
Q Consensus 271 r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le-- 348 (547)
|++|++.|.+++|||||||++|++|||||++++|||||||||||+|+|+|+||.+||+||++|+++|||||+||||||
T Consensus 242 r~~l~~~g~~~~IiAKIE~~~av~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSM 321 (513)
T PTZ00066 242 RQLLGERGRHIKIIPKIENIEGLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESM 321 (513)
T ss_pred HHHHHhCCCCceEEEEECCHHHHHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHH
Confidence 999999888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----CCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCC
Q psy6272 349 ----DHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQVFEDLCALACPP 419 (547)
Q Consensus 349 ----~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~ 419 (547)
+|||||+ +||||||+||+||+||| ||||. |||++|++||+++|+.++|..+|.........+
T Consensus 322 i~np~PTRAEv--------sDVaNAV~DG~DavMLS-gETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~ 392 (513)
T PTZ00066 322 IKNPRPTRAES--------TDVANAVLDGTDCVMLS-GETANGKFPVEAVNIMAKICFEAETCIDYRVLYHAIHLAVPTP 392 (513)
T ss_pred hhCCCCchHHH--------HHHHHHHHhCCcEEEec-chhcCCcCHHHHHHHHHHHHHHHhhccchHHhhhhhhccccCC
Confidence 9999999 99999999999999999 99999 999999999999998766655554332211122
Q ss_pred CChhhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecCCCCCCCCCC
Q psy6272 420 LDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMD 499 (547)
Q Consensus 420 ~~~~~~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d 499 (547)
.+..+++|.+|+++|.+++|++||+||.||+||+++|||||+|||||+|++++++|||+|+|||+|+++... .+
T Consensus 393 ~~~~~~ia~aa~~~A~~l~a~aIv~~T~SG~TAr~iSk~RP~~pIia~t~~~~~~R~L~L~wGV~p~~~~~~------~~ 466 (513)
T PTZ00066 393 VSVQEAVARSAVETAEDINAKLIIALTETGNTARLISKYRPSCTILALSASPSVVKSLSVARGVTTYVVNSF------QG 466 (513)
T ss_pred CchhhHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEecCC------CC
Confidence 345789999999999999999999999999999999999999999999999999999999999999987532 67
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEEecccCC-CCCCcEEEEEEee
Q psy6272 500 VDCRVQFAIQHGMEIGIISPGDPLVLINGWRKG-AGFTNIMRVVYAP 545 (547)
Q Consensus 500 ~d~~I~~a~~~~k~~g~~~~Gd~vvvv~g~~~g-~g~tntirv~~v~ 545 (547)
.+++++.|++++++.|++++||.||+++|++.+ .|+||++||+++|
T Consensus 467 ~~~~i~~a~~~~~~~g~~~~GD~vVv~~g~~~~~~g~tn~irv~~v~ 513 (513)
T PTZ00066 467 TDVVIRNAIALAKERGLVESGDSAIAVHGVKEEVAGSSNLMKVVKIP 513 (513)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCeEEEEEEcC
Confidence 899999999999999999999999999999976 7999999999987
No 2
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=4.6e-124 Score=1009.43 Aligned_cols=459 Identities=24% Similarity=0.358 Sum_probs=426.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCeee
Q psy6272 52 VNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLR 130 (547)
Q Consensus 52 ~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~GpkiR 130 (547)
+|+|||||||||||+++|+|++|+++|||+|||| |||++++|.+ +++++|++++++ +++++|++||+|||||
T Consensus 24 ~rrTKIV~TiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~-~i~~iR~~~~~~------~~~vaIl~Dl~GPkIR 96 (509)
T PLN02762 24 TRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWHRD-VIRRVRRLNEEK------GFAVAVMMDTEGSEIH 96 (509)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHH-HHHHHHHHHHHc------CCceEEEecCCCCceE
Confidence 6899999999999999999999999999999999 9999999999 999999999987 7899999999999999
Q ss_pred eeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCC--CccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEeCC
Q psy6272 131 TGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKG--TVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENN 207 (547)
Q Consensus 131 tG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~--~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~~ 207 (547)
||.+. +. .++.|++||.++|+.+. ..+ +.+.++++|++|++.+++||.||+|| +|.|+|.+++++
T Consensus 97 ~g~~~-------~~--~~i~l~~G~~v~lt~~~---~~g~~~~~~i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~~~~~ 164 (509)
T PLN02762 97 MGDLG-------GA--SSAKAEDGEEWTFTVRK---FDGSRPEFTIQVNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGP 164 (509)
T ss_pred EEecC-------CC--ccEEecCCCEEEEeCCc---cCCCCCCcEEeechHHHHHhcCCCCEEEEeCCEEEEEEEEEECC
Confidence 99997 42 36999999999999863 124 45789999999999999999999999 999999999999
Q ss_pred eEEEEEEeCcEeCCCceeee-------CCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCC-
Q psy6272 208 DVHCTVIRGGKLMDNQLVTV-------PRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVD- 279 (547)
Q Consensus 208 ~v~~~V~~gG~L~s~Kginl-------p~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~- 279 (547)
.+.|+|.+||.|+++||||| ||+.+++|+||++|++||+|++++|+|+|++|||++++|++++|++|.+.|.
T Consensus 165 ~v~~~v~~~G~l~~~KgvNl~~~g~~~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~a~Dv~~~r~~l~~~g~~ 244 (509)
T PLN02762 165 DVKCKCTDPGLLLPRANLTFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAARSRD 244 (509)
T ss_pred EEEEEEEeCcEEcCCCceeeccccCCCCCCccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999998765
Q ss_pred -CceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCc
Q psy6272 280 -RVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNV 352 (547)
Q Consensus 280 -~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~Ptr 352 (547)
+++||||||+++|++|||||++++|||||||||||+|+|+|+||.+||+||++||++|||||+|||||| +|||
T Consensus 245 ~~~~IiAKIE~~~av~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTR 324 (509)
T PLN02762 245 SDIGVIAKIESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTR 324 (509)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred ccccccCccchhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhH---HHHHHhhhcCCCCCChhh
Q psy6272 353 EEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEK---QVFEDLCALACPPLDPAH 424 (547)
Q Consensus 353 aE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~---~~f~~~~~~~~~~~~~~~ 424 (547)
||+ +||||||+||+||+||| ||||. |||++|++||+++|+++.+. ..|.........+.+..+
T Consensus 325 AEv--------sDVaNAVlDGtDavMLS-gETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (509)
T PLN02762 325 AEV--------ADVSEAVRQRADALMLS-GESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISE 395 (509)
T ss_pred hhH--------HHHHHHHHhCCCEEEEc-chhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHH
Confidence 999 99999999999999999 99999 99999999999999864321 112100000111135679
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecCCCCCCCCCCHHHHH
Q psy6272 425 SIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRV 504 (547)
Q Consensus 425 ~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d~d~~I 504 (547)
++|.+|+++|.+++|++||+||.||+||+++|||||.|||||+|++++++|+|+|+|||+|++... ..|.++++
T Consensus 396 aia~sa~~~A~~l~a~aIv~~T~sG~tA~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~------~~~~~~~~ 469 (509)
T PLN02762 396 EICNSAAKMANNLGVDAIFVYTKHGHMASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRLDF------SDDMESNL 469 (509)
T ss_pred HHHHHHHHHHhhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCC------CCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998743 37889999
Q ss_pred HHHHHHHHHcCCCCCCCeEEEEecccCCCCCCcEEEEEEee
Q psy6272 505 QFAIQHGMEIGIISPGDPLVLINGWRKGAGFTNIMRVVYAP 545 (547)
Q Consensus 505 ~~a~~~~k~~g~~~~Gd~vvvv~g~~~g~g~tntirv~~v~ 545 (547)
+.++++++++|++++||.||+++|++. +|+||+|||+++|
T Consensus 470 ~~~~~~~~~~g~~~~GD~VVv~~g~~~-~g~tn~i~v~~v~ 509 (509)
T PLN02762 470 NKTFSLLKARGMIKSGDLVIAVSDLTP-SSMLQSIQVRNVP 509 (509)
T ss_pred HHHHHHHHHcCCCCCCCEEEEEeCCCC-CCCceEEEEEEcC
Confidence 999999999999999999999999998 8999999999986
No 3
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=4.1e-122 Score=994.66 Aligned_cols=469 Identities=30% Similarity=0.482 Sum_probs=434.0
Q ss_pred CCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEec
Q psy6272 46 DSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIET 124 (547)
Q Consensus 46 ~~~~~~~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl 124 (547)
+.+..++|+|||||||||+|+++|+|++|+++|||+|||| |||++++|.+ +++++|++.+++ +++++|++||
T Consensus 14 ~~~~~~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~h~~-~i~~vr~~~~~~------g~~i~Il~Dl 86 (511)
T PLN02461 14 PADGLRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQE-TLDNLRQAMANT------GILCAVMLDT 86 (511)
T ss_pred cCccccCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHH-HHHHHHHHHHHc------CCCeEEEeeC
Confidence 4445578999999999999999999999999999999999 9999999999 999999999887 7899999999
Q ss_pred CCCeeeeeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEEEec-eeEEEEEE
Q psy6272 125 KGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVE 203 (547)
Q Consensus 125 ~GpkiRtG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~ 203 (547)
+|||||+|.+. ++ .++.|++||.++|+.+.. ..++.+.|+++|++|++.+++||.||+|| +|.|+|.+
T Consensus 87 ~GPkIR~g~~~-------~~--~~i~l~~G~~v~lt~~~~--~~~~~~~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~ 155 (511)
T PLN02461 87 KGPEIRTGFLK-------DG--KPVQLKQGQEITITTDYS--IKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLS 155 (511)
T ss_pred CCCceeccccC-------CC--CceecCCCCEEEEecCCc--cCCCCCEEEeccHHHHhhcCCCCEEEEeCCEEEEEEEE
Confidence 99999999997 32 369999999999998743 35677899999999999999999999999 99999999
Q ss_pred Ee--CCeEEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHH-HHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCC
Q psy6272 204 KE--NNDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVV-DLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDR 280 (547)
Q Consensus 204 v~--~~~v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di-~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~ 280 (547)
++ ++.++|+|.+||.|+|+|||||||..+++|+||++|++|| +|++++|+|+|++||||+++|++++|++|++.+.+
T Consensus 156 ~~~~~~~i~~~v~~gG~l~s~Kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~ 235 (511)
T PLN02461 156 CDVEAGTVRCRCENSAMLGERKNVNLPGVVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKS 235 (511)
T ss_pred EecCCCEEEEEEecCcEecCCceeeecccccCCCCCCHHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHHhCCCC
Confidence 87 6899999999999999999999999999999999999998 79999999999999999999999999999988889
Q ss_pred ceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCccc
Q psy6272 281 VLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEE 354 (547)
Q Consensus 281 i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE 354 (547)
++|||||||++|++|||||+.++|||||||||||+|+|+|+||.+||+||+.|+++|||||+|||||| +|||||
T Consensus 236 ~~IiAKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTRAE 315 (511)
T PLN02461 236 ILLISKVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTRAE 315 (511)
T ss_pred CCEEEEECCHHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred ccccCccchhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHH
Q psy6272 355 YSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIA 429 (547)
Q Consensus 355 ~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~a 429 (547)
+ +||||||+||+||+||| +|||. |||++|++||+++|+.++|..+|.........+.+..+++|.+
T Consensus 316 v--------sDVanAV~dG~D~vMLS-~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~s 386 (511)
T PLN02461 316 A--------TDVANAVLDGTDCVMLS-GETAAGAYPELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASS 386 (511)
T ss_pred H--------HHHHHHHHhCCcEEEEe-chhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhcccccccCChHHHHHHH
Confidence 9 99999999999999999 99999 9999999999999997666555644321111133577999999
Q ss_pred HHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEeCc-------------hhccccccccccceEEeecCCCCCCC
Q psy6272 430 CVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSL-------------GYVCRHLNVYRNIRPLHYIRNPQADW 496 (547)
Q Consensus 430 av~~a~~~~a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~-------------~~~ar~l~l~~GV~p~~~~~~~~~~~ 496 (547)
|+++|.+++|++||+||.||+||+++|||||+|||||+|++ ++++|||+|+|||+|+++.......|
T Consensus 387 av~~A~~l~a~aIiv~T~sG~tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~ 466 (511)
T PLN02461 387 AVRTANKVKASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATD 466 (511)
T ss_pred HHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccc
Confidence 99999999999999999999999999999999999999966 89999999999999998764322346
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCeEEEEecccCCCCCCcEEEEEEee
Q psy6272 497 SMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKGAGFTNIMRVVYAP 545 (547)
Q Consensus 497 ~~d~d~~I~~a~~~~k~~g~~~~Gd~vvvv~g~~~g~g~tntirv~~v~ 545 (547)
..+.+.+++.|++++++.|++++||.||+++|+ |.||++||+++.
T Consensus 467 ~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~~~----g~tn~i~v~~v~ 511 (511)
T PLN02461 467 SESTEEILEAAIEHAKKKGLCKPGDSVVALHRI----GGASVIKILTVK 511 (511)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCCcCEEEEEecC----CCCcEEEEEEeC
Confidence 789999999999999999999999999999884 689999999873
No 4
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=1e-121 Score=986.31 Aligned_cols=456 Identities=27% Similarity=0.423 Sum_probs=426.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCeee
Q psy6272 52 VNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLR 130 (547)
Q Consensus 52 ~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~GpkiR 130 (547)
+|+|||||||||+|+++|+|++|+++|||+|||| |||++++|.+ +|+++|++++++ +++++|++||+|||||
T Consensus 1 mr~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~sHg~~~~~~~-~i~~vr~~~~~~------~~~i~Il~Dl~GPkiR 73 (470)
T PRK09206 1 MKKTKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQ-RIKNLRNVMSKT------GKKAAILLDTKGPEIR 73 (470)
T ss_pred CCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHH-HHHHHHHHHHHh------CCCeEEEeeCCCCcee
Confidence 4899999999999999999999999999999999 9999999999 999999999987 7899999999999999
Q ss_pred eeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEeCCeE
Q psy6272 131 TGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENNDV 209 (547)
Q Consensus 131 tG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~~~v 209 (547)
||.+. ++ .++.|++||.++|+.+..+ .++.+.++++|++|++.+++||.|++|| +|.|+|.+++++.+
T Consensus 74 ~g~~~-------~~--~~i~l~~G~~~~l~~~~~~--~~~~~~i~~~~~~~~~~v~~G~~i~idDG~i~l~V~~~~~~~v 142 (470)
T PRK09206 74 TMKLE-------GG--NDVSLKAGQTFTFTTDKSV--VGNKERVAVTYEGFTADLSVGNTVLVDDGLIGMEVTAITGNEV 142 (470)
T ss_pred ccccC-------CC--CeeeecCCCEEEEEecCcc--CCCCCEEEechHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEE
Confidence 99997 43 2599999999999987532 4677889999999999999999999999 99999999999999
Q ss_pred EEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcC-CCceEEEEec
Q psy6272 210 HCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHV-DRVLILAKIE 288 (547)
Q Consensus 210 ~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~-~~i~IiakIE 288 (547)
.|+|++||.|+|+||||+||+.+++|+||++|++||+|++++|+|+|++||||+++|++++++++.+.| +++.||||||
T Consensus 143 ~~~v~~~G~l~s~Kgvn~p~~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIE 222 (470)
T PRK09206 143 ICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIE 222 (470)
T ss_pred EEEEEECCEecCCCceeccCcccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHcCCCCceEEEEEC
Confidence 999999999999999999999999999999999999999999999999999999999999999999887 5899999999
Q ss_pred CHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCcccccccCccc
Q psy6272 289 TLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDVSIGD 362 (547)
Q Consensus 289 t~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~~~~~ 362 (547)
|++|++|||||++++|||||||||||+|+|.++++.+||+|+++|+++|||||+|||||| .|||||+
T Consensus 223 t~eav~nldeIl~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTRAEv------- 295 (470)
T PRK09206 223 NQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTRAEA------- 295 (470)
T ss_pred CHHHHHhHHHHHHhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhh-------
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhc
Q psy6272 363 MNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKC 437 (547)
Q Consensus 363 ~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~~ 437 (547)
+||||||+||+||+||| ||||. |||++|++||+++|+.+.+. |..... ....+..+++|.+|+++|.++
T Consensus 296 -sDVanav~dG~DavMLS-~ETA~G~yPveaV~~m~~I~~~~E~~~~~~--~~~~~~--~~~~~~~~~ia~sa~~~A~~l 369 (470)
T PRK09206 296 -GDVANAILDGTDAVMLS-GESAKGKYPLEAVSIMATICERTDRVMNSR--LESNND--NRKLRITEAVCRGAVETAEKL 369 (470)
T ss_pred -HHHHHHhhhCCcEEEEe-chhcCCCCHHHHHHHHHHHHHHHHhhcchh--hhhhcc--ccCCChHHHHHHHHHHHHhcC
Confidence 99999999999999999 99999 99999999999999865432 211111 111356799999999999999
Q ss_pred CCcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecCCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q psy6272 438 QAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGII 517 (547)
Q Consensus 438 ~a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d~d~~I~~a~~~~k~~g~~ 517 (547)
+|++||+||.||+||+++|||||.|||||+|++++++|||+|+|||+|+++... .+.+.++..+++++++.|++
T Consensus 370 ~a~aIv~~T~sG~tA~~is~~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g~~ 443 (470)
T PRK09206 370 DAPLIVVATQGGKSARSVRKYFPDATILALTTNEKTARQLVLSKGVVPQLVKEI------ASTDDFYRLGKELALQSGLA 443 (470)
T ss_pred CCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999988543 57899999999999999999
Q ss_pred CCCCeEEEEecccCCCCCCcEEEEEEe
Q psy6272 518 SPGDPLVLINGWRKGAGFTNIMRVVYA 544 (547)
Q Consensus 518 ~~Gd~vvvv~g~~~g~g~tntirv~~v 544 (547)
++||.||+++|++..+|+||++||+.+
T Consensus 444 ~~Gd~vvv~~g~~~~~g~tn~i~v~~~ 470 (470)
T PRK09206 444 QKGDVVVMVSGALVPSGTTNTASVHVL 470 (470)
T ss_pred CCCCEEEEEeCCCCCCCCCeEEEEEEC
Confidence 999999999999755799999999863
No 5
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=8.7e-121 Score=978.47 Aligned_cols=455 Identities=25% Similarity=0.406 Sum_probs=427.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCee
Q psy6272 51 GVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQL 129 (547)
Q Consensus 51 ~~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~Gpki 129 (547)
++|+|||||||||+|+++++|++|+++|||+|||| |||++++|.+ +++++|++++++ +++++|++||+||||
T Consensus 3 ~~r~tKIi~TiGPas~~~e~l~~li~aGm~v~RlN~SHg~~e~~~~-~i~~vr~~~~~~------~~~i~Il~Dl~Gpki 75 (476)
T PRK06247 3 RNRRVKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDHDDHRE-LYKRIREVEDET------GRPIGILADLQGPKL 75 (476)
T ss_pred CCCCceEEEEECCCcCCHHHHHHHHHCCCCEEEEECCCCCHHHHHH-HHHHHHHHHHHc------CCCeeEEEeCCCCce
Confidence 46899999999999999999999999999999999 9999999999 999999999887 789999999999999
Q ss_pred eeeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEeCCe
Q psy6272 130 RTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENND 208 (547)
Q Consensus 130 RtG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~~~ 208 (547)
|+|.+. ++ ++.|++||+++|+.+. ..++++.|+++|++|++.+++||+|++|| +|.|+|.+++++.
T Consensus 76 R~g~~~-------~~---~i~l~~G~~~~l~~~~---~~~~~~~i~v~~~~l~~~v~~G~~I~idDG~i~l~V~~~~~~~ 142 (476)
T PRK06247 76 RLGRFA-------DG---KVQLANGQTFRLDVDD---APGDHDRVSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDD 142 (476)
T ss_pred eccccC-------CC---cEeccCCCEEEEEecc---cCCCCCEeecChhHhHhhcCCCCEEEEeCCeEEEEEEEEECCE
Confidence 999997 33 6999999999999873 35778899999999999999999999999 9999999999999
Q ss_pred EEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEec
Q psy6272 209 VHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIE 288 (547)
Q Consensus 209 v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIE 288 (547)
+.|+|.+||.|+++||+|+||..+++|++|++|++||+|++++|+|+|++|||++++|++++|++++ +++.||||||
T Consensus 143 i~~~v~~~G~l~~~Kgvn~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~a~Di~~~r~~l~---~~~~iiaKIE 219 (476)
T PRK06247 143 VVCRVVEGGPVSDRKGVSLPGTVLSVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKIIG---GRVPVMAKIE 219 (476)
T ss_pred EEEEEEeCcEEcCCCccccCCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhh---hcCeEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999999999999995 4789999999
Q ss_pred CHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCcccccccCccc
Q psy6272 289 TLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDVSIGD 362 (547)
Q Consensus 289 t~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~~~~~ 362 (547)
|++|++|||||++++|||||||||||+++|+++++.+||+|+++|+++|||||+|||||| .|||||+
T Consensus 220 t~eav~nldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTRAEv------- 292 (476)
T PRK06247 220 KPQAIDRLEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTRAEV------- 292 (476)
T ss_pred CHHHHHhHHHHHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCcchh-------
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhc
Q psy6272 363 MNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKC 437 (547)
Q Consensus 363 ~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~~ 437 (547)
+||||||+||+||+||| +|||. |||++|++||+++|++++|...|..... ....+..+++|.+|+++|.++
T Consensus 293 -tDVaNAV~dG~DavMLS-~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~--~~~~~~~~~ia~sa~~~A~~l 368 (476)
T PRK06247 293 -SDVATAVLDGADAVMLS-AETASGKYPVEAVRTMARIIRQVERDPTYPPLIHAQRP--QPEATKRDAISYAARDIAERL 368 (476)
T ss_pred -HHHHHHHHhCCcEEEEc-chhcCCCCHHHHHHHHHHHHHHHhhccchhhhhhhccc--ccCCCHHHHHHHHHHHHHHhC
Confidence 99999999999999999 99999 9999999999999987655433332211 112356789999999999999
Q ss_pred CCcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecCCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q psy6272 438 QAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGII 517 (547)
Q Consensus 438 ~a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d~d~~I~~a~~~~k~~g~~ 517 (547)
+|++||+||.||+||+++|||||+|||||+|++++++|+|+|+|||+|+++.. ..|.++++..+++++++.|++
T Consensus 369 ~a~~Iv~~T~sG~ta~~isk~RP~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~------~~~~~~~~~~a~~~~~~~g~~ 442 (476)
T PRK06247 369 DLAALVAYTSSGDTALRAARERPPLPILALTPNPETARRLALTWGVHCVVVDD------ARDTDDMVRRADRIALAEGFY 442 (476)
T ss_pred CCCEEEEEcCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCCeeEecCC------CCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999998754 367899999999999999999
Q ss_pred CCCCeEEEEecccCC-CCCCcEEEEEEee
Q psy6272 518 SPGDPLVLINGWRKG-AGFTNIMRVVYAP 545 (547)
Q Consensus 518 ~~Gd~vvvv~g~~~g-~g~tntirv~~v~ 545 (547)
++||.||+++|++.+ .|.||++||++|+
T Consensus 443 ~~Gd~vvv~~g~~~~~~g~tn~i~v~~v~ 471 (476)
T PRK06247 443 KRGDRVVIVAGVPPGTPGSTNMLRIAYIG 471 (476)
T ss_pred CCCCEEEEEeCCCCCCCCCCeEEEEEEeC
Confidence 999999999999976 6899999999984
No 6
>PLN02765 pyruvate kinase
Probab=100.00 E-value=5.7e-120 Score=978.43 Aligned_cols=478 Identities=28% Similarity=0.453 Sum_probs=429.9
Q ss_pred hhhHHHhhhhcCCCCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccc
Q psy6272 33 ADRYLNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLE 111 (547)
Q Consensus 33 ~~~~l~h~~~l~i~~~~~~~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~ 111 (547)
++..++|+ |+........|+|||||||||+|+++|+|++|+++|||||||| |||++|+|.+ +|+++|++++++
T Consensus 10 ~~~~~~~~--~~~~~~~~~~~~tKIVaTiGPas~~~e~l~~li~aGm~v~RlNfSHg~~e~h~~-~i~~vR~~~~~~--- 83 (526)
T PLN02765 10 EPIRLASI--LEPSKPSFFPALTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQE-TLENLKIAVKNT--- 83 (526)
T ss_pred cccchhhh--cccccccccCCCceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHH-HHHHHHHHHHHh---
Confidence 44556666 4433323233459999999999999999999999999999999 9999999999 999999999987
Q ss_pred cccceeeEEEEecCCCeeeeeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEE
Q psy6272 112 ECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIV 191 (547)
Q Consensus 112 ~~~~~~i~I~~Dl~GpkiRtG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I 191 (547)
+++++|++||+|||||+|.+. ++ ++.|++||+++|+.+.. ..++.+.|+++|++|++.+++||+|
T Consensus 84 ---~~~vaIl~Dl~GPkIR~g~~~-------~~---~i~l~~G~~~~l~~~~~--~~g~~~~i~v~~~~l~~~v~~Gd~I 148 (526)
T PLN02765 84 ---KKLCAVMLDTVGPELQVINKT-------EK---PISLKAGNTVTLTPDQS--KEASSEVLPINFPGLAKAVKPGDTI 148 (526)
T ss_pred ---CCCeEEEecCCCCceeeeecC-------CC---cEecCCCCEEEEecccc--cCCCCCEEeechHHHHhhcCCCCEE
Confidence 789999999999999999997 43 79999999999998742 2467789999999999999999999
Q ss_pred EEec---------eeEEEEEEEeCCeEEEEEEeCcEeCCC-ceeeeCCCCcCCCCCChhhHHHH-HHHHHcCCcEEEEcc
Q psy6272 192 YIDR---------NIKLKVVEKENNDVHCTVIRGGKLMDN-QLVTVPRVTFNLPVIADRDKHVV-DLIVREAVDIIIMSS 260 (547)
Q Consensus 192 ~idD---------~I~l~V~~v~~~~v~~~V~~gG~L~s~-Kginlp~~~~~lp~lt~~D~~di-~~~~~~g~d~I~~sf 260 (547)
++|| +|.|+|.+++++.+.|+|.+||.|+++ ||+|+||+.+++|++|++|++|| .|++++|+|||++||
T Consensus 149 lidDG~~~g~~dg~i~l~V~~~~~~~v~~~v~~gG~L~s~~kgvnlpg~~~~lp~ltekD~~di~~f~~~~~vD~ia~SF 228 (526)
T PLN02765 149 FVGQYLFTGSETTSVWLEVDEVKGDDVVCTVKNSATLAGSLFTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSY 228 (526)
T ss_pred EECCcccccccCceEEEEEEEEECCEEEEEEEeCcEECCCccceeCCCCcCCCCCCcHhHHHHHHHHHHHcCCCEEEECC
Confidence 9976 599999999999999999999999994 89999999999999999999999 699999999999999
Q ss_pred cCChhhHHHHHHHHHhcCC-CceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCc
Q psy6272 261 VTGANSIREMRGMLEDHVD-RVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKP 339 (547)
Q Consensus 261 V~sa~di~~~r~~l~~~~~-~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKP 339 (547)
|++++|+.++|++|.+.|. ++.|||||||++|++|||||+.++|||||||||||+|+|+|+||.+||+||++|+++|||
T Consensus 229 Vr~a~DI~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKP 308 (526)
T PLN02765 229 TRHAEDVREAREFLSSLGLSQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKP 308 (526)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCC
Confidence 9999999999999988775 899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC------CCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHH
Q psy6272 340 FLVVGDILP------DHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 340 vi~aTq~Le------~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
||+ ||||| .|||||+ +||||||+||+||+||| +|||. |||++|++||+++|+.++|...
T Consensus 309 VI~-TQmLeSMi~np~PTRAEv--------sDVaNAV~DGaDavMLS-gETA~G~yPveaV~~m~~I~~~aE~~~~~~~~ 378 (526)
T PLN02765 309 AVV-TRVVDSMTDNLRPTRAEA--------TDVANAVLDGADAILLG-AETLRGLYPVETISTVGRICAEAEKVFNQDLY 378 (526)
T ss_pred eEE-ehhhhHHhhCCCCChhhH--------HHHHHHHHhCCCEEEec-chhcCCCCHHHHHHHHHHHHHHHHhhcchhhh
Confidence 996 99999 9999999 99999999999999999 99999 9999999999999987655444
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEe-Cc------------hhccc
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVS-SL------------GYVCR 475 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk~RP~~pIiavt-~~------------~~~ar 475 (547)
|.........+.+..+++|.+|+++|.+++|++|||||.||+||+++|||||+|||||+| ++ ++++|
T Consensus 379 ~~~~~~~~~~~~~~~~aia~sav~~A~~l~a~aIvv~T~sG~tAr~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR 458 (526)
T PLN02765 379 FKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQAR 458 (526)
T ss_pred hhhhhcccccCCCHHHHHHHHHHHHHhhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCcHHHHH
Confidence 433211111233557899999999999999999999999999999999999999999999 76 79999
Q ss_pred cccccccceEEeecCCCC-CCCCCCHHHHHHHHHHHHHHcCCCCCCCeEEEEecccCCCCCCcEEEEEEee
Q psy6272 476 HLNVYRNIRPLHYIRNPQ-ADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKGAGFTNIMRVVYAP 545 (547)
Q Consensus 476 ~l~l~~GV~p~~~~~~~~-~~~~~d~d~~I~~a~~~~k~~g~~~~Gd~vvvv~g~~~g~g~tntirv~~v~ 545 (547)
||+|+|||+|+++..... ..|..+.+.++..|++++++.|++++||.||++++ .|+||++||+.++
T Consensus 459 ~L~L~~GV~P~~~~~~~~~e~~~~~~~~~~~~a~~~~~~~g~~~~GD~vvv~~~----~g~tn~i~v~~v~ 525 (526)
T PLN02765 459 QCLIVRGLFPMLADPRHSAESTSATNESVLKVALDHGKAAGVIKSHDRVVVCQK----VGDSSVVKIIELD 525 (526)
T ss_pred HhhcccCCEEEEeccccccccccccHHHHHHHHHHHHHHcCCCCCCCEEEEEec----CCCCceEEEEEcC
Confidence 999999999998864322 23445578999999999999999999999998873 4789999999885
No 7
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=1.8e-119 Score=973.87 Aligned_cols=466 Identities=33% Similarity=0.581 Sum_probs=435.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCeee
Q psy6272 52 VNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLR 130 (547)
Q Consensus 52 ~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~GpkiR 130 (547)
+|+|||||||||+|+++|.|++|+++|||+|||| |||++++|.+ +++++|++++++ +++|+|++||+|||||
T Consensus 1 ~~~tkIi~TiGp~s~~~e~l~~li~aG~~v~RiN~sHg~~~~~~~-~i~~vr~~~~~~------~~~i~il~Dl~GpkiR 73 (480)
T cd00288 1 LRRTKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQS-RIDNVREAAEKT------GGPVAIALDTKGPEIR 73 (480)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHH-HHHHHHHHHHHh------CCCeEEEEecCCCcee
Confidence 4899999999999999999999999999999999 9999999999 999999999987 7899999999999999
Q ss_pred eeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEeCC-e
Q psy6272 131 TGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENN-D 208 (547)
Q Consensus 131 tG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~~-~ 208 (547)
+|.+. ++ .++.|++||.++|+++.. ...++.+.|+++|++|++.+++||.||+|| +|.|+|.+++++ .
T Consensus 74 ~g~~~-------~~--~~i~l~~G~~~~lt~~~~-~~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~~~ 143 (480)
T cd00288 74 TGLFK-------GG--KDISLKAGDKFLVTTDPA-AKKGTKEKIYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKT 143 (480)
T ss_pred ecccC-------CC--CceecCCCCEEEEEeccc-ccCCCCcEEeechHHhHhhcCCCCEEEEeCCEEEEEEEEEcCCce
Confidence 99997 32 269999999999998753 235778899999999999999999999999 999999999999 9
Q ss_pred EEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEec
Q psy6272 209 VHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIE 288 (547)
Q Consensus 209 v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIE 288 (547)
++|+|.+||.|+++||||+||..+++|+||++|++||+|++++|+|+|++|||++++|++++|+++++.+.++.+|||||
T Consensus 144 i~~~v~~~G~l~~~kgin~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFV~~~~di~~~r~~l~~~~~~~~iiakIE 223 (480)
T cd00288 144 LVCEVLNGGVLGSRKGVNLPGTDVDLPALSEKDKADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIE 223 (480)
T ss_pred EEEEEEeCeEEcCCCceEeeCcccCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCcccccccCccc
Q psy6272 289 TLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDVSIGD 362 (547)
Q Consensus 289 t~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~~~~~ 362 (547)
|++|++|||||++++|||||||||||+++|.++++.+|++|+++|+++|||||+|||||| .|||||+
T Consensus 224 t~~av~nldeI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~PTRAEv------- 296 (480)
T cd00288 224 NQEGVNNFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRPTRAEV------- 296 (480)
T ss_pred CHHHHHhHHHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhh-------
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhc
Q psy6272 363 MNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKC 437 (547)
Q Consensus 363 ~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~~ 437 (547)
+||||||+||+||+||| +|||. |||++|++||+++|+.++|...|...........+..+++|.+|+++|.++
T Consensus 297 -tDVanav~dG~D~vmLS-~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~~l 374 (480)
T cd00288 297 -SDVANAVLDGTDCVMLS-GETAKGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFEL 374 (480)
T ss_pred -HHHHHHHHhCCcEEEEe-chhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHHhc
Confidence 99999999999999999 99999 999999999999998765544343221111112256899999999999999
Q ss_pred CCcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecCCCCCCCCCCHHHHHHHHHHHHHHcCCC
Q psy6272 438 QAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGII 517 (547)
Q Consensus 438 ~a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d~d~~I~~a~~~~k~~g~~ 517 (547)
++++||+||.||+||+++|||||.|||||+|++++++|+|+|+|||+|+++...+ ..|..+.+.+++.+.++++++|++
T Consensus 375 ~akaIVv~T~SG~TA~~lS~~RP~~pIiavT~~~~~~r~l~l~~GV~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~ 453 (480)
T cd00288 375 GAKAIVVLTTSGRTARLVSKYRPNAPIIAVTRNEQTARQLHLYRGVYPVLFEEPK-PGWQEDTDARLKAAVNVAKEKGLL 453 (480)
T ss_pred CCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHhhheeeccCcEEEEecccc-cccCCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999886543 379999999999999999999999
Q ss_pred CCCCeEEEEecccCCCCCCcEEEEEEe
Q psy6272 518 SPGDPLVLINGWRKGAGFTNIMRVVYA 544 (547)
Q Consensus 518 ~~Gd~vvvv~g~~~g~g~tntirv~~v 544 (547)
++||.||+++|++.+.|+||++||+++
T Consensus 454 ~~gd~vv~~~g~~~~~~~tn~i~v~~~ 480 (480)
T cd00288 454 KKGDLVVVVQGWPVGSGSTNTMRILTV 480 (480)
T ss_pred CCCCEEEEEeCCCCCCCCCeEEEEEEC
Confidence 999999999999877789999999875
No 8
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-119 Score=963.22 Aligned_cols=461 Identities=32% Similarity=0.495 Sum_probs=433.4
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCe
Q psy6272 50 RGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQ 128 (547)
Q Consensus 50 ~~~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~Gpk 128 (547)
..+|+|||||||||+++++++|++|+++||||+||| |||++++|.+ .++++|++++++ ++|++||+||||||
T Consensus 2 ~~~~kTKIVaTiGPas~s~e~l~~li~aG~nV~RlNfSHG~~e~h~~-~i~~vR~~~~~~------~~~vaIl~DlkGPk 74 (477)
T COG0469 2 RMMRKTKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGDHEEHKK-RIDNVREAAEKL------GRPVAILLDLKGPK 74 (477)
T ss_pred CCCccceEEEEECCCCCCHHHHHHHHHccCcEEEEecCCCChHHHHH-HHHHHHHHHHHh------CCceEEEEcCCCCc
Confidence 357999999999999999999999999999999999 9999999999 999999999987 89999999999999
Q ss_pred eeeeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEeCC
Q psy6272 129 LRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENN 207 (547)
Q Consensus 129 iRtG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~~ 207 (547)
||+|.+. ++ .+.|++|++++|+.+.... .++.+.++++|+.|+++|++|++||+|| +|+|+|.+++++
T Consensus 75 IR~g~~~-------~~---~~~l~~G~~~~~~~~~~~~-~~~~~~v~v~y~~l~~dV~~G~~iLlDDG~i~l~V~~v~~~ 143 (477)
T COG0469 75 IRTGKFK-------GG---AVELEKGEKFTLTTDDKVG-EGDEERVSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGD 143 (477)
T ss_pred ceeEecC-------CC---cEEeecCCEEEEecccccc-CCCCcEEeccHHHHHhhcCCCCEEEEeCCeeEEEEEEeeCC
Confidence 9999998 43 7999999999999987643 2356899999999999999999999999 999999999999
Q ss_pred eEEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCC-CceEEEE
Q psy6272 208 DVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVD-RVLILAK 286 (547)
Q Consensus 208 ~v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~-~i~Iiak 286 (547)
.+.|+|.|||.|+++||||+||+.+++|++|++|+.||+|++++|+|||++|||++++|++++|+.|.+.+. +++||||
T Consensus 144 ~v~~~v~n~G~l~~~KgvN~pg~~l~~palteKD~~dl~f~~~~gvD~vA~SFVr~~~Dv~~~R~~l~~~~~~~~~iiaK 223 (477)
T COG0469 144 AVITRVLNGGVLSSNKGVNLPGVDLSLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAK 223 (477)
T ss_pred EEEEEEEeCCCccCCCceecCCCCCCCCCCCccCHHHHHHHHhcCCCEEEEecCCCHHHHHHHHHHHHHhCCCCceEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999999987765 5999999
Q ss_pred ecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCcccccccCc
Q psy6272 287 IETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDVSI 360 (547)
Q Consensus 287 IEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~~~ 360 (547)
||+++|++|||||+++||||||||||||+|+|.++||.+||+||++||++|||||+|||||| +|||||+
T Consensus 224 IE~~eav~NldeIi~~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~PTRAEv----- 298 (477)
T COG0469 224 IENQEAVDNLDEIIEASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRPTRAEV----- 298 (477)
T ss_pred ecCHHHHhHHHHHHHhcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCCCchhh-----
Confidence 99999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cchhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHH
Q psy6272 361 GDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAAL 435 (547)
Q Consensus 361 ~~~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~ 435 (547)
+||||||+||+|++||| +|||. |||++|++||.++|+.+.+.+++... ......+..++++.+++++|.
T Consensus 299 ---sDVanAvlDGtDAvMLS-~ETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~--~~~~~~~~~e~ia~aa~~~a~ 372 (477)
T COG0469 299 ---SDVANAVLDGTDAVMLS-GETAAGKYPVEAVATMARIAKEAEKELPDNQLLRFR--VDPPDSSITEAIALAAVDIAE 372 (477)
T ss_pred ---hHHHHHHHhCCceeeec-hhhhcCCCHHHHHHHHHHHHHHHhcccchhhhhhhc--cccccccHHHHHHHHHHHHHH
Confidence 99999999999999999 99999 99999999999999987643333322 122345678999999999999
Q ss_pred hcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecCCCCCCCCCCHHHHHHHHHHHHHHcC
Q psy6272 436 KCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIG 515 (547)
Q Consensus 436 ~~~a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d~d~~I~~a~~~~k~~g 515 (547)
++++++||++|.||+||+++|||||.+||||+|++++++|+|+|+|||+|+++.. |..+.+.+++.+++.+.+.|
T Consensus 373 ~l~~k~iv~~T~sG~ta~~isk~Rp~~pIia~t~~~~v~r~l~l~~GV~p~~~~~-----~~~~~~~~~~~~~~~~~~~g 447 (477)
T COG0469 373 KLDAKAIVTLTESGRTARLLSKYRPEAPIIALTPNERVARRLALVWGVYPLLVEE-----KPTSTDEMVEEAVEKLLESG 447 (477)
T ss_pred hcCCcEEEEEcCCCHHHHHHhcCCCCCcEEEECCCHHHHhhhceeecceeEEecC-----CCCcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999964 45889999999999999999
Q ss_pred CCCCCCeEEEEecccCC-CCCCcEEEEEEe
Q psy6272 516 IISPGDPLVLINGWRKG-AGFTNIMRVVYA 544 (547)
Q Consensus 516 ~~~~Gd~vvvv~g~~~g-~g~tntirv~~v 544 (547)
+++.||.||++.|.+.+ .|.||++||+.+
T Consensus 448 ~~~~gD~vvit~G~~~~~~G~tn~ikv~~v 477 (477)
T COG0469 448 LVKKGDLVVITAGVPMGTVGTTNTIKVLTV 477 (477)
T ss_pred cccCCCEEEEecCcccccCCCceeEEEEeC
Confidence 99999999999998877 889999999875
No 9
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=3.3e-119 Score=991.05 Aligned_cols=458 Identities=28% Similarity=0.428 Sum_probs=431.2
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCe
Q psy6272 50 RGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQ 128 (547)
Q Consensus 50 ~~~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~Gpk 128 (547)
..+|+|||||||||+|+++|+|++|+++|||+|||| |||++++|.+ +++++|++++++ +++++|++||+|||
T Consensus 5 ~~~r~tKIi~TiGPas~~~e~l~~li~aG~~v~RlN~sHg~~e~~~~-~i~~ir~~~~~~------~~~i~i~~Dl~Gpk 77 (590)
T PRK06354 5 DLMRRTKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGA-RIKNIREASKKL------GKTVGILQDLQGPK 77 (590)
T ss_pred CCCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHH-HHHHHHHHHHHh------CCCEEEEeeCCCCc
Confidence 357999999999999999999999999999999999 9999999999 999999999987 78999999999999
Q ss_pred eeeeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEe--
Q psy6272 129 LRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKE-- 205 (547)
Q Consensus 129 iRtG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~-- 205 (547)
||||.+. ++ ++.|++||+++||.+. ..++++.|+|+|++|++.+++||.||+|| +|.|+|.+++
T Consensus 78 iR~g~~~-------~~---~i~l~~G~~~~l~~~~---~~~~~~~i~v~~~~l~~~v~~Gd~i~idDG~i~l~V~~~~~~ 144 (590)
T PRK06354 78 IRLGRFE-------DG---PIELKTGDEFILTSRE---VLGTQEKFSVTYDGLADEVPVGSRILLDDGLIELEVEEVDKA 144 (590)
T ss_pred eeccccC-------CC---cEEecCCCEEEEEecc---cCCCCCEEeechHHHHhhcCCCCEEEEeCCeEEEEEEEEEcC
Confidence 9999997 33 6999999999999874 34677899999999999999999999999 9999999988
Q ss_pred CCeEEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHh-cCCCceEE
Q psy6272 206 NNDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLED-HVDRVLIL 284 (547)
Q Consensus 206 ~~~v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~-~~~~i~Ii 284 (547)
++.+.|+|++||.|+++|||||||+.+++|++|++|++||+|++++|+|+|++|||++++|++++++++.+ .+.++.||
T Consensus 145 ~~~v~~~v~~~g~l~~~Kgvn~p~~~~~~p~ltekD~~di~f~~~~~vD~ia~SFVr~~~dv~~~r~~l~~~~~~~~~ii 224 (590)
T PRK06354 145 DGELHCKVLVGGVLSNKKGVNFPGVSLSLPAITEKDREDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPII 224 (590)
T ss_pred CCEEEEEEEeCeEECCCCcccccCCccCCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHHHHHhcCCCceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999999954 57899999
Q ss_pred EEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCccccccc
Q psy6272 285 AKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDV 358 (547)
Q Consensus 285 akIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~ 358 (547)
|||||++|++|||||++++|||||||||||+++|.++++.+||+|+++|+++|||||+|||||| +|||||+
T Consensus 225 aKIEt~eav~nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~PTRAEv--- 301 (590)
T PRK06354 225 AKIEKQEAIDNIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRPTRAEA--- 301 (590)
T ss_pred EEECCHHHHHhHHHHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCchhh---
Confidence 9999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CccchhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHH
Q psy6272 359 SIGDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNA 433 (547)
Q Consensus 359 ~~~~~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~ 433 (547)
+||||||+||+||+||| +|||. |||++|++||+++|+.++|..+|..... ...+..+++|.+|+++
T Consensus 302 -----sDVaNav~DG~DavMLS-~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~---~~~~~~~~ia~aa~~~ 372 (590)
T PRK06354 302 -----SDVANAILDGTDAVMLS-NETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPE---FTTTITNAISQAVSHI 372 (590)
T ss_pred -----HHHHHHhhhCCcEEEec-ccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhhccc---cCCCHHHHHHHHHHHH
Confidence 99999999999999999 99999 9999999999999997666544443321 1235678999999999
Q ss_pred HHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecCCCCCCCCCCHHHHHHHHHHHHHH
Q psy6272 434 ALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGME 513 (547)
Q Consensus 434 a~~~~a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d~d~~I~~a~~~~k~ 513 (547)
|.+++|++||+||.||+||+++|||||.|||||+|++++++|||+|+|||+|+++... .+.+.+++.+++++++
T Consensus 373 a~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~~~~~~~~ 446 (590)
T PRK06354 373 ALQLDAAAIVTLTKSGATARNVSKYRPKTPILAVTPNESVARRLQLVWGVTPLLVLDA------PSTDETFDAAINVAQE 446 (590)
T ss_pred HhhcCCCEEEEECCChHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998643 5789999999999999
Q ss_pred cCCCCCCCeEEEEecccCC-CCCCcEEEEEEee
Q psy6272 514 IGIISPGDPLVLINGWRKG-AGFTNIMRVVYAP 545 (547)
Q Consensus 514 ~g~~~~Gd~vvvv~g~~~g-~g~tntirv~~v~ 545 (547)
.|++++||.||+++|++.+ .|.||++||+++.
T Consensus 447 ~g~~~~gd~vv~~~g~~~~~~g~tn~~~v~~v~ 479 (590)
T PRK06354 447 SGLLKQGDLVVITAGTLVGESGSTDLMKVHVVG 479 (590)
T ss_pred cCCCCCCCEEEEEeCCCCCcCCCceeEEEEEec
Confidence 9999999999999999976 6899999999883
No 10
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=1.7e-116 Score=947.44 Aligned_cols=445 Identities=29% Similarity=0.430 Sum_probs=419.1
Q ss_pred CCCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCee
Q psy6272 51 GVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQL 129 (547)
Q Consensus 51 ~~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~Gpki 129 (547)
++|+|||||||||+|+++|+|++|+++|||+|||| |||++++|.+ +++++|++++++ ++|++|++||+||||
T Consensus 2 ~~~~tkIi~TiGp~s~~~e~l~~li~~G~~v~RiN~sHg~~~~~~~-~i~~ir~~~~~~------~~~i~I~~Dl~Gpki 74 (465)
T PRK05826 2 MLRRTKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGK-RAALVREIAAKL------GRPVAILLDLKGPKI 74 (465)
T ss_pred CCCCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEEcCCCCHHHHHH-HHHHHHHHHHHh------CCCeEEEEeCCCCce
Confidence 46899999999999999999999999999999999 9999999999 999999999887 789999999999999
Q ss_pred eeeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEeCCe
Q psy6272 130 RTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENND 208 (547)
Q Consensus 130 RtG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~~~ 208 (547)
|+|.+. ++ ++.|++||+++|+.+.. ..++++.|++||++|++.+++||.||+|| +|.|+|.+++++.
T Consensus 75 R~g~~~-------~~---~i~l~~G~~v~l~~~~~--~~~~~~~i~v~~~~l~~~v~~Gd~ilidDG~i~l~V~~~~~~~ 142 (465)
T PRK05826 75 RVGKFK-------EG---KITLKTGDKFTLDTDQK--EEGDKERVGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDE 142 (465)
T ss_pred eecccc-------CC---cEEecCCCEEEEEeccc--cCCCCCEEEechHHhHhhcCCCCEEEEeCCeEEEEEEEEeCCE
Confidence 999997 43 69999999999998743 35778899999999999999999999999 9999999999999
Q ss_pred EEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCC-CceEEEEe
Q psy6272 209 VHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVD-RVLILAKI 287 (547)
Q Consensus 209 v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~-~i~IiakI 287 (547)
+.|+|++||.|+|+||||+||+.+++|++|++|..+|+|++++|+|+|++|||++++|++++++++.+.|. ++.|||||
T Consensus 143 v~~~v~~~g~l~s~kgvnlp~~~~~lp~lte~D~~~i~~ald~g~d~I~~sfV~saedv~~l~~~l~~~~~~~~~iiakI 222 (465)
T PRK05826 143 VETEVKNGGPLSNNKGINIPGGGLSLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKI 222 (465)
T ss_pred EEEEEEeCcEecCCceeeccCcccCCCCCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHcCCcCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred cCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCcccccccCcc
Q psy6272 288 ETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDVSIG 361 (547)
Q Consensus 288 Et~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~~~~ 361 (547)
||++|++|||||++++|||||||||||+++|.++++.+|++|+++|+++|||+|+|||||| +|||||+
T Consensus 223 Et~eav~nldeI~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEv------ 296 (465)
T PRK05826 223 ERAEAVDNIDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPRPTRAEV------ 296 (465)
T ss_pred cCHHHHHhHHHHHHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhh------
Confidence 9999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHHh
Q psy6272 362 DMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALK 436 (547)
Q Consensus 362 ~~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~ 436 (547)
+||||||+||+||+||| ||||. |||++|++||+++|+++++...+..+. ....+..+++|.+|+++|.+
T Consensus 297 --sDVanav~dG~D~vmLS-~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~---~~~~~~~~~ia~aa~~~a~~ 370 (465)
T PRK05826 297 --SDVANAVLDGTDAVMLS-GETAAGKYPVEAVEAMARICKGAEKEFSINLSKHRLD---RQFDRIDEAIAMSAMYAANH 370 (465)
T ss_pred --hhHHHHHHcCCcEEEec-cccccCcCHHHHHHHHHHHHHHHHhccchhhhhhhcc---ccccchHHHHHHHHHHHHHh
Confidence 99999999999999999 99999 999999999999999766532222111 11135689999999999999
Q ss_pred cC-CcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecCCCCCCCCCCHHHHHHHHHHHHHHcC
Q psy6272 437 CQ-AVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIG 515 (547)
Q Consensus 437 ~~-a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d~d~~I~~a~~~~k~~g 515 (547)
++ |++|||||.||+||+++|||||.|||||+|++++++|||+|+|||+|++++.. .|.+.++++|+++++++|
T Consensus 371 l~~a~~Ivv~T~sG~ta~~isk~RP~~pI~~~t~~~~~~r~l~l~~GV~p~~~~~~------~~~~~~~~~a~~~~~~~g 444 (465)
T PRK05826 371 LKGVKAIVALTESGRTARLISRFRPGAPIFAVTRDEKTQRRLALYRGVYPVLFDSA------ADTDDAAEEALRLLLEKG 444 (465)
T ss_pred cCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHHHHhhcccCcEEEEeCCC------CCHHHHHHHHHHHHHHcC
Confidence 99 99999999999999999999999999999999999999999999999988542 578999999999999999
Q ss_pred CCCCCCeEEEEecccCC
Q psy6272 516 IISPGDPLVLINGWRKG 532 (547)
Q Consensus 516 ~~~~Gd~vvvv~g~~~g 532 (547)
++++||.||+++|++.+
T Consensus 445 ~~~~gd~vvvv~g~~~~ 461 (465)
T PRK05826 445 LVESGDLVVVTSGDPMG 461 (465)
T ss_pred CCCCCCEEEEEeCCCCC
Confidence 99999999999998854
No 11
>PLN02623 pyruvate kinase
Probab=100.00 E-value=4e-116 Score=954.95 Aligned_cols=476 Identities=24% Similarity=0.342 Sum_probs=440.2
Q ss_pred CCccccchhhhhhhHHHhhhhcCCCCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHH
Q psy6272 22 APPVNQVNAAFADRYLNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKN 100 (547)
Q Consensus 22 ~~~~~~~~~~~~~~~l~h~~~l~i~~~~~~~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ 100 (547)
|.++-|++..+.+.. ++.|..+|+|||||||||+|+++|+|++|+++|||||||| |||++++|.+ +|++
T Consensus 88 ~~~~~~~~~~~~~~~---------~~~~~~~rkTKIV~TiGPas~s~e~l~~li~aGmnv~RlNfSHg~~e~h~~-~i~~ 157 (581)
T PLN02623 88 VLLEIQQLGETAVGM---------WSKPSVRRKTKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQK-VIDL 157 (581)
T ss_pred ccchhhHHHhhhhhh---------cCCCCCCCCCeEEEEeCCCcCCHHHHHHHHHcCCCEEEEECCCCCHHHHHH-HHHH
Confidence 555666666666655 9999999999999999999999999999999999999999 9999999999 9999
Q ss_pred HHHHHHHhccccccceeeEEEEecCCCeeeeeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCC
Q psy6272 101 VKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSME 180 (547)
Q Consensus 101 ir~a~~~~~~~~~~~~~i~I~~Dl~GpkiRtG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~ 180 (547)
+|++.++.. +++++|++||+|||||+|.+. + ++.|++||.|+||.+. ..++.+.++++|++
T Consensus 158 vr~~~~~~~-----~~~iaIl~Dl~GPkIRig~~~-------~----~i~l~~G~~v~lt~~~---~~g~~~~i~v~y~~ 218 (581)
T PLN02623 158 VKEYNAQSK-----DNVIAIMLDTKGPEVRSGDLP-------Q----PIMLEEGQEFTFTIKR---GVSTEDCVSVNYDD 218 (581)
T ss_pred HHHHHHHcC-----CCceEEEecCCCCceecccCC-------C----CEEecCCCEEEEecCc---cCCCCCEEeechHH
Confidence 999988752 489999999999999999997 3 5999999999999874 24778899999999
Q ss_pred cccccCCCCEEEEec-eeEEEEEEEeCCeEEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEc
Q psy6272 181 LPKRVIPDDIVYIDR-NIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMS 259 (547)
Q Consensus 181 ~~~~v~~Gd~I~idD-~I~l~V~~v~~~~v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~s 259 (547)
|++.+++||.||+|| +|.|+|.+++++.+.|+|.+||.|+|+||||+||+.+++|+||++|++||+|++++|+|+|++|
T Consensus 219 l~~~v~~Gd~IlidDG~i~l~V~~~~~~~v~~~V~~gG~L~s~KgvNlpg~~~~lp~lTekD~~di~f~~~~~vD~ialS 298 (581)
T PLN02623 219 FVNDVEVGDMLLVDGGMMSLAVKSKTSDSVKCEVVDGGELKSRRHLNVRGKSATLPSITEKDWEDIKFGVENKVDFYAVS 298 (581)
T ss_pred HHhhCCCCCEEEEeCCeEEEEEEEEECCEEEEEEEeceEecCCCCCCCCCCcCCCCCCCHHHHHHHHHHHHcCCCEEEEC
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCc
Q psy6272 260 SVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKP 339 (547)
Q Consensus 260 fV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKP 339 (547)
||++++||+++++++++.|.++.||+||||++|++|||||++.+|||||||||||+++|+++++.+|++|+++|+++|||
T Consensus 299 FVr~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKp 378 (581)
T PLN02623 299 FVKDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKP 378 (581)
T ss_pred CCCCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCC------CCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHH
Q psy6272 340 FLVVGDILP------DHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 340 vi~aTq~Le------~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
||+|||||| .|||||+ +|++|++.+|+|++||+ +||+. |||++|++||+++|+.+++...
T Consensus 379 vivaTQMLESMi~~~~PTRAEv--------~Dva~av~dG~d~vmLs-~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~ 449 (581)
T PLN02623 379 VIVATNMLESMIVHPTPTRAEV--------SDIAIAVREGADAVMLS-GETAHGKFPLKAVKVMHTVALRTEATLPEGTT 449 (581)
T ss_pred EEEECchhhhcccCCCCCchhH--------HHHHHHHHcCCCEEEec-chhhcCcCHHHHHHHHHHHHHHHHhhcccchh
Confidence 999999999 9999999 99999999999999999 99999 9999999999999986544322
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEee
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHY 488 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~ 488 (547)
+..+... ...+..+++|.+|+++|++++|+ ||+||.||+||+++|||||.|||||+|++++++|+|+|+|||+|+++
T Consensus 450 ~~~~~~~--~~~~~~~~ia~sA~~~A~~l~a~-Ivv~T~sG~tA~~lSr~RP~~pI~avT~~~~~aR~L~L~~GV~P~~~ 526 (581)
T PLN02623 450 PPNLGQA--FKNHMSEMFAFHATMMANTLGTS-IIVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLALYQGVCPIYM 526 (581)
T ss_pred hhhhccc--cCCChHHHHHHHHHHHHHhcCCc-EEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccccEEEec
Confidence 2211111 12356789999999999999999 99999999999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCeEEEEeccc--CC-CCCCcEEEEEEe
Q psy6272 489 IRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWR--KG-AGFTNIMRVVYA 544 (547)
Q Consensus 489 ~~~~~~~~~~d~d~~I~~a~~~~k~~g~~~~Gd~vvvv~g~~--~g-~g~tntirv~~v 544 (547)
+ |..+.+++++.+++++++.|++++||.||+++|+. .+ .|.||++||+++
T Consensus 527 ~------~~~~~e~~i~~a~~~~~~~g~v~~GD~vviv~g~~~p~~~~g~tn~i~V~~v 579 (581)
T PLN02623 527 Q------FSDDAEETFARALSLLLNKGMVKEGEEVALVQSGRQPIWRSESTHHIQVRKV 579 (581)
T ss_pred C------CCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeccCCCCCCCCCCeEEEEEEe
Confidence 4 34788999999999999999999999999998743 33 689999999987
No 12
>KOG2323|consensus
Probab=100.00 E-value=4.4e-117 Score=940.55 Aligned_cols=485 Identities=35% Similarity=0.595 Sum_probs=469.7
Q ss_pred hHHHhhhhcCC-CCCCCCCCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhcccc
Q psy6272 35 RYLNHLEQLNL-DSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEE 112 (547)
Q Consensus 35 ~~l~h~~~l~i-~~~~~~~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~ 112 (547)
++++|.|.|+. .+.+...|+|+|+||+||+++++|+|++|+++|||++|+| |||+|++|++ ++.|+|++.+.++
T Consensus 2 s~~~~~~~L~~~~~~~~~~~~t~ivctigP~s~s~e~l~~m~~aGmniarlNfShGs~~~h~~-tidn~~~a~~~~~--- 77 (501)
T KOG2323|consen 2 SFLKHECLLSGSNGAPKKRRKTKIVCTIGPASRSVEMLRKLLKAGMNIARLNFSHGSHEYHQE-TIDNLRDAISNTG--- 77 (501)
T ss_pred chhhhhhhhcccccccccccceeeEeccCCccchHHHHHHHHHcCCcEEEEEcCCCChHHHHH-HHHHHHHHHhhcC---
Confidence 57899999998 6667778899999999999999999999999999999999 9999999999 9999999999884
Q ss_pred ccceeeEEEEecCCCeeeeeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEE
Q psy6272 113 CKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVY 192 (547)
Q Consensus 113 ~~~~~i~I~~Dl~GpkiRtG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~ 192 (547)
..|++|++|++||++|||.+. ++ ..++|++|+.++||+|..+... +.+.+++||+++.++|++||.||
T Consensus 78 --~~~~ai~LDtkGpEirtg~~~-------~~--~~i~L~~G~~i~~t~d~~~~~~-~~~~~~vdyk~~~~~V~~G~~i~ 145 (501)
T KOG2323|consen 78 --ALPCAIMLDTKGPEIRTGDLK-------NG--KPIKLKEGQEITITTDYSYEAK-LSETISVDYKKLAKDVKPGDIIY 145 (501)
T ss_pred --CcchhhhhccCCCeEeecccC-------CC--CceeecCCCEEEEEcChhhccc-cceEEEeehHHhhhccccCCEEE
Confidence 357999999999999999998 54 4899999999999999988766 68899999999999999999999
Q ss_pred Eec-eeEEEEEEEeCCeEEEEEEeCcEeCCCce-eeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHH
Q psy6272 193 IDR-NIKLKVVEKENNDVHCTVIRGGKLMDNQL-VTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREM 270 (547)
Q Consensus 193 idD-~I~l~V~~v~~~~v~~~V~~gG~L~s~Kg-inlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~ 270 (547)
+|| .+++.|.++..+.+.|+|+|+|.|+|+|| +|+||+..+||+||++|.+|++|++++++|+|++||||.++|+.++
T Consensus 146 vddgi~s~~V~~~~~~~~~c~v~n~g~l~s~k~~vnlpg~~vdlp~ltekd~~dl~fGven~vd~i~~SfIR~a~dv~~i 225 (501)
T KOG2323|consen 146 VDDGLISLIVKSVSKDEVTCRVENGGMLGSRKGNVNLPGTHVDLPALTEKDEKDLKFGVENKVDMIFASFIRKASDVREV 225 (501)
T ss_pred ECCceeeeEEEEeecCceEEEEecCcccccccCcccCCCccccCCccChhhHHHHhcCCCCCCCEEEeeeeeehHHHHHH
Confidence 999 99999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC--
Q psy6272 271 RGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP-- 348 (547)
Q Consensus 271 r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le-- 348 (547)
|++|++.+++++||+|||+++|+.|+|||+.++||+||+|||||+|+|+|+++.+||.||.+||++|||||+||||||
T Consensus 226 R~~Lg~~g~~ikiisKIEn~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm 305 (501)
T KOG2323|consen 226 RKVLGESGKNIKLISKIENQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESM 305 (501)
T ss_pred HHHhCccCCcceEEEEechhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ----CCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCC
Q psy6272 349 ----DHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQVFEDLCALACPP 419 (547)
Q Consensus 349 ----~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~ 419 (547)
+|||||. +||+|||+||+||+||| ||||. +||++|+.||.++|+.+||..+|+.+....+.+
T Consensus 306 ~~kprPtRaE~--------SDVanAVLdg~D~vmLs-gEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~~~v~~~ 376 (501)
T KOG2323|consen 306 IVKPRPTRAEA--------SDVANAVLDGADCVMLS-GETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELGTAVSFP 376 (501)
T ss_pred ccCCCCCccch--------HHHHHHHhccCceEEec-cchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhcCCC
Confidence 9999999 99999999999999999 99999 999999999999999999999999998888889
Q ss_pred CChhhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecCCCCCCCCCC
Q psy6272 420 LDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMD 499 (547)
Q Consensus 420 ~~~~~~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d 499 (547)
.++.+++|.+|+.+|.++.|.+|+|+|+||++|+++|+|||.|||++||+..+.|||++|||||+|++|...+..+|.+|
T Consensus 377 ~~~ie~~a~~Av~~a~~~~a~aIvv~T~sg~~a~lvskyrP~~PIi~vt~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~ 456 (501)
T KOG2323|consen 377 MSTIESLAASAVRAATKCLASAIVVLTKSGYTAILVSKYRPSVPIISVTRPVLAARQSHLYRGIIPVLYARSPVEDWSED 456 (501)
T ss_pred CchhHHHHHHHHHHHHhhcceEEEEEecCcccHHHHhccCCCCCEEEEeccHHHHHHHHhhccceeeeecccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCeEEEEecccCCCCCCcEEEEEEe
Q psy6272 500 VDCRVQFAIQHGMEIGIISPGDPLVLINGWRKGAGFTNIMRVVYA 544 (547)
Q Consensus 500 ~d~~I~~a~~~~k~~g~~~~Gd~vvvv~g~~~g~g~tntirv~~v 544 (547)
.|.++++|+++++++|+++.||.+|++++|.++.|++|+|++.++
T Consensus 457 ~e~~i~~g~~~~k~~g~~k~gd~~vvv~~~~~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 457 VESRIKFGLDFGKKKGILKKGDVVVVVNKGKGGASVTNTIRVEKV 501 (501)
T ss_pred HHHHHHHHHHHHHhcchhhcCCEEEEEecccCCccceeeEEEeeC
Confidence 999999999999999999999999999999999999999999864
No 13
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=5.1e-113 Score=915.79 Aligned_cols=440 Identities=29% Similarity=0.507 Sum_probs=407.9
Q ss_pred CcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCeeeeeccCCCCccCCCCCcccEEEecCCEE
Q psy6272 79 VNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANI 157 (547)
Q Consensus 79 m~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~GpkiRtG~l~~p~~~~~~~~~~~i~L~~G~~v 157 (547)
||||||| |||++|+|.+ +++++|++++++ +++++|++||+|||||||.+. ++ ++.|++||++
T Consensus 1 ~~v~RlN~sHg~~e~h~~-~i~~vr~~~~~~------~~~i~il~Dl~GPkiR~g~~~-------~~---~~~l~~G~~~ 63 (454)
T PTZ00300 1 MSVARMNFSHGSHEYHQT-TINNVRQAAAEL------GVNIAIALDTKGPEIRTGLFV-------GG---EAVMERGATC 63 (454)
T ss_pred CCEEEEECCCCCHHHHHH-HHHHHHHHHHHh------CCCeEEEEecCCCceeccccC-------CC---cEEecCCCEE
Confidence 8999999 9999999999 999999999987 789999999999999999997 43 6999999999
Q ss_pred EEeeccccccCCCccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEeC-CeEEEEEEeCcEeCCCceeeeCCCCcCCC
Q psy6272 158 VLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKEN-NDVHCTVIRGGKLMDNQLVTVPRVTFNLP 235 (547)
Q Consensus 158 ~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~-~~v~~~V~~gG~L~s~Kginlp~~~~~lp 235 (547)
+|+.+..+...++.+.|+++|++|++.+++||.||+|| +|.|+|.++++ +.+.|+|.+||.|+++|||||||+.+++|
T Consensus 64 ~l~~~~~~~~~~~~~~i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~v~~~v~~gG~l~~~kgvnlp~~~~~l~ 143 (454)
T PTZ00300 64 YVTTDPAFADKGTKDKFYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVTNAHTISDRRGVNLPGCDVDLP 143 (454)
T ss_pred EEEeccccccCCCCCEEEecCcccccccCCCCEEEEeCCeEEEEEEEEcCCceEEEEEecCcEecCCCccccCCCccCCC
Confidence 99988655456788899999999999999999999999 99999999986 69999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccc
Q psy6272 236 VIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAV 315 (547)
Q Consensus 236 ~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~ 315 (547)
++|++|.++|+|++++|+|+|++|||++++|++++++++++.|.++.|||||||++|++|||||+..+|||||||||||+
T Consensus 144 ~ltekD~~dI~~ald~gvd~I~~SfVrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgv 223 (454)
T PTZ00300 144 AVSAKDCADLQFGVEQGVDMIFASFIRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGV 223 (454)
T ss_pred CCChhhHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhh
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH---
Q psy6272 316 ATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH--- 386 (547)
Q Consensus 316 e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~--- 386 (547)
++|.++|+.+||+|+++|+++|||||+|||||| +|||||+ +||||||+||+||+||| +|||.
T Consensus 224 ei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~PTRAEv--------sDVanAv~dG~DavMLS-~ETA~G~y 294 (454)
T PTZ00300 224 EIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRPTRAEV--------SDVANAVFNGADCVMLS-GETAKGKY 294 (454)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCCCchhH--------HHHHHHHHhCCcEEEEe-chhcCCCC
Confidence 999999999999999999999999999999999 9999999 99999999999999999 99999
Q ss_pred --HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCE
Q psy6272 387 --HRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPI 464 (547)
Q Consensus 387 --eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk~RP~~pI 464 (547)
|||++|++||+++|+..++...|.........+.+..+++|.+|+++|.+++|++||+||.||+||+++|||||.|||
T Consensus 295 P~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pI 374 (454)
T PTZ00300 295 PNEVVQYMARICLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPI 374 (454)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCE
Confidence 999999999999998754444444332111223356799999999999999999999999999999999999999999
Q ss_pred EEEeCchhccccccccccceEEeecCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCeEEEEecccCCCCCCcEEEEEEe
Q psy6272 465 LAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKGAGFTNIMRVVYA 544 (547)
Q Consensus 465 iavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d~d~~I~~a~~~~k~~g~~~~Gd~vvvv~g~~~g~g~tntirv~~v 544 (547)
||+|++++++|||+|+|||+|++++.. ...+..+.+++++.+++++++.|++++||.||+++|++.++|+||++||+.+
T Consensus 375 ia~t~~~~~ar~l~l~~GV~p~~~~~~-~~~~~~~~~~~~~~a~~~~~~~g~~~~gd~vvi~~g~~~~~g~tn~i~v~~~ 453 (454)
T PTZ00300 375 VCVTTRLQTCRQLNITQGVESVFFDAE-RLGHDEGKEQRVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYANQTRIILV 453 (454)
T ss_pred EEECCCHHHHHHhhcccCcEEEEeccc-cccccCCHHHHHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEe
Confidence 999999999999999999999987541 1122367889999999999999999999999999999988899999999987
Q ss_pred e
Q psy6272 545 P 545 (547)
Q Consensus 545 ~ 545 (547)
+
T Consensus 454 ~ 454 (454)
T PTZ00300 454 S 454 (454)
T ss_pred C
Confidence 4
No 14
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=1.6e-110 Score=906.43 Aligned_cols=457 Identities=33% Similarity=0.510 Sum_probs=425.5
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCeeee
Q psy6272 53 NLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRT 131 (547)
Q Consensus 53 r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~GpkiRt 131 (547)
|+|||||||||+|+++|+|++|+++|||+|||| |||++++|.+ +|+++|++++++ +++++|++||+|||||+
T Consensus 1 ~~tkii~Tigp~~~~~e~l~~l~~~G~~~~R~N~shg~~~~~~~-~i~~ir~~~~~~------~~~~~i~~Dl~GpkiR~ 73 (473)
T TIGR01064 1 RRTKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEHGK-RIENVREAAEKL------GRPVAILLDTKGPEIRT 73 (473)
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHcCCCEEEEECCCCCHHHHHH-HHHHHHHHHHHh------CCCeEEEEeCCCCceec
Confidence 689999999999999999999999999999999 9999999999 999999999887 78999999999999999
Q ss_pred eccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEeCCeEE
Q psy6272 132 GKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENNDVH 210 (547)
Q Consensus 132 G~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~~~v~ 210 (547)
|.+. ++ ++.|++||.|+|+.+..+ ..++.+.|+++|++|++.+++||.|++|| +|.|+|.+++++.+.
T Consensus 74 g~~~-------~~---~~~l~~g~~v~l~~~~~~-~~~~~~~i~~~~~~~~~~~~~g~~i~iddG~i~l~V~~~~~~~~~ 142 (473)
T TIGR01064 74 GEIK-------GG---PVKLKKGDKVIITTDDIK-GEGDEEDVSVDYKGLTKDVSEGDKILVDDGKISLVVVSVEGDKVI 142 (473)
T ss_pred cccC-------CC---ceecCCCCEEEEeccccc-CCCCCCEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEE
Confidence 9997 43 699999999999987422 34677899999999999999999999999 999999999999999
Q ss_pred EEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcC-CCceEEEEecC
Q psy6272 211 CTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHV-DRVLILAKIET 289 (547)
Q Consensus 211 ~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~-~~i~IiakIEt 289 (547)
|+|.+||.|+++||||+||+.+++|++|++|.+||.+++++|+|+|++|||++++|++.+++++.+.+ .++.|+|||||
T Consensus 143 ~~v~~~g~l~~~kgvn~p~~~~~~~~ltekD~~Dl~~~~~~~~d~I~lskV~sa~dv~~l~~~l~~~~~~~~~Iia~IEt 222 (473)
T TIGR01064 143 CEVLNGGTLKSKKGVNLPGADVDLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIEN 222 (473)
T ss_pred EEEEeCcEEcCCceeecCCCccCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHhcCCCCceEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999998877 58999999999
Q ss_pred HHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCcccccccCccch
Q psy6272 290 LLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDVSIGDM 363 (547)
Q Consensus 290 ~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~~~~~~ 363 (547)
++|++|++||++++||+|+|||||++++|.++++.+|++|+.+|+++|||+|+|||||| .|||||+
T Consensus 223 ~~av~nl~eI~~~~dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~-------- 294 (473)
T TIGR01064 223 QEGVDNIDEIAEASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEV-------- 294 (473)
T ss_pred HHHHHhHHHHHhhCCcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccH--------
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhcC
Q psy6272 364 NDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQ 438 (547)
Q Consensus 364 ~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~ 438 (547)
+|++|++++|+|++||| +||+. |||++|++||+++|++++|...|...........+..+++|.+|+++|.+++
T Consensus 295 ~dv~~~v~~G~d~v~ls-~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~ 373 (473)
T TIGR01064 295 SDVANAILDGTDAVMLS-GETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLD 373 (473)
T ss_pred HHHHHHHHcCCCEEEEc-chhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcC
Confidence 99999999999999999 99999 9999999999999987655444433211011123567999999999999999
Q ss_pred CcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecCCCCCCCCCCHHHHHHHHHHHHHHcCCCC
Q psy6272 439 AVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIIS 518 (547)
Q Consensus 439 a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d~d~~I~~a~~~~k~~g~~~ 518 (547)
|++||+||.||+||+++|||||.|||||+|++++++|+|+|+|||+|+++.. |..+.++++..++++++++|+++
T Consensus 374 akaIVv~T~SG~TA~~vSr~rp~~PIiAvT~~~~v~R~L~L~wGV~Pil~~~-----~~~~~~~~i~~a~~~l~~~gl~~ 448 (473)
T TIGR01064 374 AKAIVVLTESGRTARLLSKYRPNAPIIAVTPNERVARQLALYWGVFPFLVDE-----EPSDTEARVNKALELLKEKGILK 448 (473)
T ss_pred CCEEEEEcCChHHHHHHHhhCCCCCEEEEcCCHHHHHHhhccCCcEEEEeCC-----CCCCHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999998763 44788999999999999999999
Q ss_pred CCCeEEEEecc-cCC-CCCCcEEEE
Q psy6272 519 PGDPLVLINGW-RKG-AGFTNIMRV 541 (547)
Q Consensus 519 ~Gd~vvvv~g~-~~g-~g~tntirv 541 (547)
+||.||+++|| +.+ .|.||+|||
T Consensus 449 ~GD~VVvv~g~~~~~~~~~~n~i~v 473 (473)
T TIGR01064 449 KGDLVVVIQGGAPIGGVGGTNTIRV 473 (473)
T ss_pred CCCEEEEEecCCCCCCCCCCeEEeC
Confidence 99999999996 544 789999985
No 15
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=1.5e-96 Score=771.44 Aligned_cols=334 Identities=33% Similarity=0.554 Sum_probs=303.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCeee
Q psy6272 52 VNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLR 130 (547)
Q Consensus 52 ~r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~GpkiR 130 (547)
||+|||||||||+|+++++|++|+++|||||||| |||++++|.+ +++++|++++++ +++++|++||+|||||
T Consensus 1 mRkTKIi~TiGPas~~~e~l~~li~aGm~v~RiN~SHg~~e~~~~-~i~~iR~a~~~~------~~~i~IllDl~GPkIR 73 (348)
T PF00224_consen 1 MRKTKIIATIGPASESVEVLRKLIEAGMNVARINFSHGTHEEHKE-IIENIREAEKEL------GKPIAILLDLKGPKIR 73 (348)
T ss_dssp -SSSEEEEEESTTTCSHHHHHHHHHHTEEEEEEETTSS-HHHHHH-HHHHHHHHHHHT------TTS-EEEEEE-TS-EB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccEEEEEeeecCCHHHHHH-HHHHHHHHHhcc------CCceEEEeccCCCcce
Confidence 6999999999999999999999999999999999 9999999999 999999999997 6789999999999999
Q ss_pred eeccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEeCCe-
Q psy6272 131 TGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENND- 208 (547)
Q Consensus 131 tG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~~~- 208 (547)
||.+. ++ ..++.|++||+|+||.+..+...++...|+|||+++++.|++||+||||| +|.|+|.+++++.
T Consensus 74 tg~l~-------~g-~~~i~L~~G~~v~lt~d~~~~~~g~~~~I~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~~ 145 (348)
T PF00224_consen 74 TGRLK-------DG-KKEIELKKGDTVTLTTDDSYEESGDSNRIPVNYPELFEDVKPGDKILIDDGKIELEVTEVDGDSS 145 (348)
T ss_dssp B-BBT-------TS-SSSEEE-TTSEEEEESSCTGTTCBBSSEEEBSSTTHHHHS-TTEEEEETTTTEEEEEEEEESTEE
T ss_pred eeeec-------cc-cccccccCCCEEEEEeccccccccCcccccCCchhhhhhcCCCCEEEEcCCCcEEEEEEEcCCcc
Confidence 99998 42 24799999999999999988777788999999999999999999999999 9999999999999
Q ss_pred EEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEec
Q psy6272 209 VHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIE 288 (547)
Q Consensus 209 v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIE 288 (547)
+.|+|.+||.|+++||||+|+..+++|+||++|++||+|++++|+|+|++|||++++|++++|++|.+.+.+++||||||
T Consensus 146 i~~~v~~~G~L~~~KgVnlp~~~~~lp~LtekD~~di~fa~~~~vD~IalSFVrsa~dV~~lr~~l~~~~~~~~iiaKIE 225 (348)
T PF00224_consen 146 IKCEVLNGGKLKSRKGVNLPGVDLDLPALTEKDKEDIKFAVENGVDFIALSFVRSAEDVKELRKILGEKGKDIKIIAKIE 225 (348)
T ss_dssp EEEEESS-EEEESSEBEEETTS---S-SS-HHHHHHHHHHHHTT-SEEEETTE-SHHHHHHHHHHHTCTTTTSEEEEEE-
T ss_pred eeEEeCCCCCccCCccceecccccccccCCHHHHHHHHHHHHcCCCEEEecCCCchHHHHHHHHHhhhcCcccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred CHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCcccccccCccc
Q psy6272 289 TLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDVSIGD 362 (547)
Q Consensus 289 t~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~~~~~ 362 (547)
|++|++|||||+.+||||||||||||+|+|+++|+.+||+|+++|+++|||||+|||||| .|||||+
T Consensus 226 ~~~~v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTRaEv------- 298 (348)
T PF00224_consen 226 TKEAVENLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTRAEV------- 298 (348)
T ss_dssp SHHHHHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--HHHH-------
T ss_pred cHHHHhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCchHHH-------
Confidence 999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhhhhHHHH
Q psy6272 363 MNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEKQVF 409 (547)
Q Consensus 363 ~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f 409 (547)
+||||||+||+||+||| +|||. |||++|++|++++|+.++|+++|
T Consensus 299 -~Dv~nav~dg~d~vmLs-~ETa~G~~p~~~v~~~~~i~~~~E~~~~~~~~~ 348 (348)
T PF00224_consen 299 -SDVANAVLDGADAVMLS-GETAIGKYPVEAVKTMARIIREAEKYLDYRNVF 348 (348)
T ss_dssp -HHHHHHHHHT-SEEEES-HHHHTSSSHHHHHHHHHHHHHHHHHTS-HHHHH
T ss_pred -hhHHHHHHcCCCEEEec-CCcCCCCCHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 99999999999999999 99999 99999999999999999988776
No 16
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=2.5e-92 Score=735.34 Aligned_cols=317 Identities=24% Similarity=0.418 Sum_probs=305.0
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCeeeee
Q psy6272 54 LTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTG 132 (547)
Q Consensus 54 ~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~GpkiRtG 132 (547)
+++|||||||+|++++.|++|+++|||+|||| |||++|+|.+ +++++|++.+ +++|++||+|||||||
T Consensus 2 ~~~~V~TiGPas~~~e~l~~Li~aGm~v~RlNfSHGs~e~h~~-~i~~vR~~~~----------~vaIl~Dl~GPkIR~G 70 (352)
T PRK06739 2 TIDRICTIGPASNNKETLAQLINNGMKIVRLNLSHGTHESHKD-IIRLVKSLDD----------SIKILGDVQGPKIRLG 70 (352)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHH-HHHHHHHhhh----------hcceeecCCCCcceec
Confidence 58999999999999999999999999999999 9999999999 9999999753 4799999999999999
Q ss_pred ccCCCCccCCCCCcccEEEecCCEEEEeeccccccCCCccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEeCCeEEE
Q psy6272 133 KLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENNDVHC 211 (547)
Q Consensus 133 ~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~~~~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~~~v~~ 211 (547)
.+. ++ ++.|++|+.++|+.+. ..++.+.++++|++|++.+++||.||+|| +|.|+|.+++++.+.|
T Consensus 71 ~~~-------~~---~i~l~~G~~v~lt~~~---~~g~~~~i~v~~~~l~~~v~~Gd~IlidDG~i~l~V~~v~~~~v~~ 137 (352)
T PRK06739 71 EIK-------GE---QITLQAGDSFILHTQP---VTGSSTEASVDYEGIANDVKVGSRILMNDGEVELIVEKVSTDKIET 137 (352)
T ss_pred ccC-------CC---cEEecCCCEEEEecCc---cCCCCCEEecchHHHHhhcCCCCEEEEeCCEEEEEEEEEeCCEEEE
Confidence 997 43 6999999999999874 34677889999999999999999999999 9999999999999999
Q ss_pred EEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcC-CCceEEEEecCH
Q psy6272 212 TVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHV-DRVLILAKIETL 290 (547)
Q Consensus 212 ~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~-~~i~IiakIEt~ 290 (547)
+|.+||.|+|+||||+||+.+++|++|++|++||+|++++|+|+|++|||++++||+++|++|.+.| .+++|||||||+
T Consensus 138 ~v~~gG~L~s~Kgvn~pg~~~~lp~ltekD~~di~f~~~~~vD~ia~SFVr~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~ 217 (352)
T PRK06739 138 KVKTGGNISSHKGVNLPGAIVRLPAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETM 217 (352)
T ss_pred EEeeCcEEcCCCCeecccccCCCCCCCHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999875 589999999999
Q ss_pred HHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCcccccccCccchh
Q psy6272 291 LGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDVSIGDMN 364 (547)
Q Consensus 291 ~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~~~~~~~ 364 (547)
+|++||+||++++|||||||||||+|+|+|+||.+||+|++.|+++|||||+|||||| .|||||+ +
T Consensus 218 ~av~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTRAEv--------s 289 (352)
T PRK06739 218 EAIENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTRAEV--------T 289 (352)
T ss_pred HHHHHHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCChHHH--------H
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999 9
Q ss_pred hHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhhh
Q psy6272 365 DVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVL 403 (547)
Q Consensus 365 Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~~ 403 (547)
||||||+||+||+||| +|||. |||++|++||+++|+.+
T Consensus 290 DVanaV~dG~D~vMLS-~ETA~G~yPveaV~~m~~I~~~aE~~~ 332 (352)
T PRK06739 290 DVFQAVLDGTNAVMLS-AESASGEHPIESVSTLRLVSEFAEHVK 332 (352)
T ss_pred HHHHHHHhCCcEEEEc-ccccCCCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999 99999 99999999999999653
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=9.1e-91 Score=756.16 Aligned_cols=363 Identities=25% Similarity=0.346 Sum_probs=336.5
Q ss_pred CCCCCCCCCCccccchhhhhhhHHHhhhhcCCCCCCCCCCCceEEEecC-CCCCCHHHHHHHHHhCCcEEeec-cCCCHH
Q psy6272 14 PWRKPDPLAPPVNQVNAAFADRYLNHLEQLNLDSPVRGVNLTNIMATVG-ENNNSVDLIKLMLRSGVNILRIP-THSSKL 91 (547)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~h~~~l~i~~~~~~~r~tkIi~TiG-pas~~~e~l~~li~aGm~v~RiN-sHg~~e 91 (547)
|+.++...|..++++++.|++.+ +|+++..|+|||||||| |+++++++|++|+++|||||||| |||+++
T Consensus 109 ~~~~~~~~~~~g~~lL~~~~~~l---------~G~~~~~R~tkImvTlg~~Aa~d~e~i~~Li~aGmdvaRINcAHg~~e 179 (608)
T PRK14725 109 PPEDTAVTFEEGDELLDEHAEAL---------LGPPPSGRPTRIMVTLPTEAADDPDLVRRLLAAGMDIARINCAHDDPE 179 (608)
T ss_pred CCCCchhhhhhHHHHHHHHHHHh---------cCCCCCCCCceEEEeCCCcccCCHHHHHHHHHcCCCEeeeECCCCCHH
Confidence 46678889999999999999999 99999999999999999 79999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCeeeeeccCCCCcc---C---------------------------
Q psy6272 92 YQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNV---G--------------------------- 141 (547)
Q Consensus 92 ~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~GpkiRtG~l~~p~~~---~--------------------------- 141 (547)
+|.+ ||+++|++++++ +++|+|+|||+|||||||.+.+..++ .
T Consensus 180 ~w~~-mi~~vR~a~~~~------gr~~~I~mDL~GPKiRtG~l~~g~~v~~~~p~rd~~G~v~~pa~~~l~~~~~~~~~~ 252 (608)
T PRK14725 180 AWRA-MIANVRTAEEEL------GRRCRIAMDLAGPKLRTGPIAPGPRVIKLRPTRDALGRVLTPARLWLTASESPPPSP 252 (608)
T ss_pred HHHH-HHHHHHHHHHHc------CCCEEEEEeCCCCcceEEecCCCccccccccccccccccccchhheeecccCCCCCC
Confidence 9999 999999999987 79999999999999999999741000 0
Q ss_pred ------------------C----------------------------------------------------C---CCccc
Q psy6272 142 ------------------H----------------------------------------------------G---DNSYS 148 (547)
Q Consensus 142 ------------------~----------------------------------------------------~---~~~~~ 148 (547)
. + ..+..
T Consensus 253 ~~~~~~~~v~~~~~~~l~~Gd~i~~~DaRg~~R~l~V~~~~~~~~~~~~~~~~Y~~~G~~l~~~~~~~~~v~~~p~~~~~ 332 (608)
T PRK14725 253 PPGPVGLPVDPEWLARLEPGDELRFTDARGKKRKLTVTEVDDEGVLAEGSQTAYLANGTLLRLGRHDSTRVGGLPPVEQK 332 (608)
T ss_pred CccccccccChhhhhhcCCCceeeeeeccccceeeeEEeecCceeEEeecceeeeccCceeeeccccccccccccccCcc
Confidence 0 0 00125
Q ss_pred EEEecCCEEEEeecccccc--CCCcc--EEEecCCCcccccCCCCEEEEec-eeEEEEEEEeCCeEEEEEEe----CcEe
Q psy6272 149 VEIAQGANIVLTANQLIET--KGTVK--RLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENNDVHCTVIR----GGKL 219 (547)
Q Consensus 149 i~L~~G~~v~lt~~~~~~~--~~~~~--~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~~~v~~~V~~----gG~L 219 (547)
+.|++||.++|+.+..... .++.. .|+|+|+++++.+++||.||||| +|.++|++++++.+.|+|++ ||+|
T Consensus 333 i~L~~Gd~l~lt~~~~~~~~~~~~~~~~~i~~t~p~l~~~v~~G~~VlidDG~I~l~V~~~~~~~v~~~V~~a~~~gg~L 412 (608)
T PRK14725 333 LRLKVGDRLVLTRDDAPGDPAQGDAPPARISCTLPEAFRAARVGERVWFDDGKIGAVVVKVEADEVELRITHARPGGSKL 412 (608)
T ss_pred eEecCCCEEEEecCCcCCccccCCCCccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEECCEEEEEEEEecCCCCEe
Confidence 8999999999998853321 12344 89999999999999999999999 99999999999999999999 9999
Q ss_pred CCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcC-CCceEEEEecCHHHHhhHHH
Q psy6272 220 MDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHV-DRVLILAKIETLLGMEYMDE 298 (547)
Q Consensus 220 ~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~-~~i~IiakIEt~~av~nlde 298 (547)
+++|||||||+.+++|+||++|++||+|++++ +|+|++|||++++||+.+|++|.+.| .++.|||||||++|++||+|
T Consensus 413 ~s~KGiNlP~~~l~lp~LTekD~~dl~f~~~~-vD~ValSFVrs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~e 491 (608)
T PRK14725 413 KAGKGINLPDSHLPLPALTDKDLEDLAFVAKH-ADIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPR 491 (608)
T ss_pred cCCCceecCCCCCCCCCCCHHHHHHHHHHHHh-CCEEEECCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999999999999998875 48999999999999999999
Q ss_pred HHhhc-----CEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCcccccccCccchhhHH
Q psy6272 299 IIMES-----DGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDVSIGDMNDVN 367 (547)
Q Consensus 299 Il~~~-----DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~~~~~~~Dv~ 367 (547)
|+.++ |||||||||||+|+|+++|+.+||+||++|+++|||||||||||| .|||||+ +|||
T Consensus 492 Il~~am~~~~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~p~PTRAEv--------tDVA 563 (608)
T PRK14725 492 ILLEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKKGLPSRAEI--------TDAA 563 (608)
T ss_pred HHHhhccCCCcEEEEECCccccccCHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccCCCCCchhH--------HHHH
Confidence 99997 999999999999999999999999999999999999999999999 9999999 9999
Q ss_pred HHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhh
Q psy6272 368 SIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVL 403 (547)
Q Consensus 368 nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~ 403 (547)
||+ |+||||||||..-.|||++|++||+++|++.
T Consensus 564 nAv--gaD~VMLS~G~yPveAV~~l~~I~~r~e~~~ 597 (608)
T PRK14725 564 MAL--RAECVMLNKGPHIVEAVRVLDDILRRMEEHQ 597 (608)
T ss_pred hhh--cCCEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999 9999999999999999999999999999874
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=8.5e-88 Score=727.47 Aligned_cols=355 Identities=20% Similarity=0.282 Sum_probs=334.2
Q ss_pred CCCCCCCCCCccccchhhhhhhHHHhhhhcCCCCCCCCCCCceEEEec-CCCCCCHHHHHHHHHhCCcEEeec-cCCCHH
Q psy6272 14 PWRKPDPLAPPVNQVNAAFADRYLNHLEQLNLDSPVRGVNLTNIMATV-GENNNSVDLIKLMLRSGVNILRIP-THSSKL 91 (547)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~h~~~l~i~~~~~~~r~tkIi~Ti-Gpas~~~e~l~~li~aGm~v~RiN-sHg~~e 91 (547)
|..|+...|+.++++++.|++.+ +|+++.+|+||||||| ||+++++++|++|+++|||||||| |||+++
T Consensus 103 ~~~~~~~~~~~g~~~l~~~~~~l---------~g~~~~~r~tkIv~Tlg~pa~~~~e~i~~Li~aGmdvaRiN~SHg~~e 173 (493)
T PRK08187 103 PPRPSPEQFFAGERLLAAHTEEL---------FGPRPAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPA 173 (493)
T ss_pred CCCCchhhhhhHHHHHHHHHHHH---------cCCCcCCCCceEEEECCCCccCCHHHHHHHHHCCCCEEEEECCCCCHH
Confidence 45677889999999999999999 9999999999999999 599999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccceeeEEEEecCCCeeeeeccCCCCccCCCCCcccEEEecCCEEEEeeccccccC-CC
Q psy6272 92 YQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETK-GT 170 (547)
Q Consensus 92 ~~~~~~i~~ir~a~~~~~~~~~~~~~i~I~~Dl~GpkiRtG~l~~p~~~~~~~~~~~i~L~~G~~v~lt~~~~~~~~-~~ 170 (547)
+|.+ +|+++|++++++ +++|+|++||+|||||||.+. ++ ...+.|++||.|+|+.+...... ++
T Consensus 174 ~~~~-~i~~vR~a~~~~------g~~i~Il~DL~GPKIRtG~l~-------~~-~~~~~l~~Gd~i~l~~~~~~~~~~~~ 238 (493)
T PRK08187 174 AWQA-MIGHLRQAERAT------GRRCKILMDLAGPKIRTGAVA-------GP-LGKTRLYTGDRLALVAQGPPRRIDEE 238 (493)
T ss_pred HHHH-HHHHHHHHHHHc------CCCeEEEEeCCCCceeecccC-------CC-CccEEecCCCEEEEeccccccCCCCC
Confidence 9999 999999999987 789999999999999999997 32 23589999999999987543211 24
Q ss_pred ccEEEecCCCcccccCCCCEEEEec-eeEEEEEEEeCCeEEEEEE----eCcEeCCCceeeeCCCCcCCCCCChhhHHHH
Q psy6272 171 VKRLFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENNDVHCTVI----RGGKLMDNQLVTVPRVTFNLPVIADRDKHVV 245 (547)
Q Consensus 171 ~~~i~v~~~~~~~~v~~Gd~I~idD-~I~l~V~~v~~~~v~~~V~----~gG~L~s~Kginlp~~~~~lp~lt~~D~~di 245 (547)
...|+|+|+++++.+++||.||||| +|.++|.+++++.+.|+|+ +||+|+++|||||||+.+++|++|++|.+||
T Consensus 239 ~~~i~~~~~~l~~~v~~Gd~IlidDG~I~l~V~~v~~~~v~~~V~~~~~~gg~L~~~KgiNlP~~~vrin~LtekD~~DL 318 (493)
T PRK08187 239 HFQVTCTLPEILARLAVGARVWIDDGKLGARVERVGPGGALLEVTHARPKGLKLKPEKGLNFPDTALDLPALTEKDRADL 318 (493)
T ss_pred ccEEEechHHHHHhcCCCCEEEEeCCeEEEEEEEEeCCEEEEEEEEecCCCeEecCCCcccccCceecCCCCCHhHHHHH
Confidence 5789999999999999999999999 9999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEcccCChhhHHHHHHHHHhcC----CCceEEEEecCHHHHhhHHHHHhhcC-----EEEEcCCccccc
Q psy6272 246 DLIVREAVDIIIMSSVTGANSIREMRGMLEDHV----DRVLILAKIETLLGMEYMDEIIMESD-----GVVLNRIQLAVA 316 (547)
Q Consensus 246 ~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~----~~i~IiakIEt~~av~nldeIl~~~D-----gImIargDLg~e 316 (547)
.|+++ ++|+|++|||++++||+.++++|.+.+ .++.||+||||++|++|++||+.++| ||||||||||+|
T Consensus 319 ~f~~~-~vD~I~lSfV~saeDV~~l~~~L~~~~~~~~~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvE 397 (493)
T PRK08187 319 DFVAR-HADLVGYSFVQSPGDVEALQAALAARRPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVE 397 (493)
T ss_pred HHHHh-cCCEEEECCCCCHHHHHHHHHHHHHhCCCCCCCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhh
Confidence 99999 599999999999999999999998765 58999999999999999999999888 999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC------CCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHH
Q psy6272 317 TSVEVTFLAQKMIAARCNKQGKPFLVVGDILP------DHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVD 390 (547)
Q Consensus 317 ~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le------~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~ 390 (547)
+|+++++.+|++|+++|+++|||||||||||| .|||||+ +||||+ ||+||||||||.+-.|||+
T Consensus 398 ig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~p~PTRAEv--------tDvAna--dgaDavMLs~G~ypveaV~ 467 (493)
T PRK08187 398 IGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKKGLPSRAEM--------TDAAMA--ARAECVMLNKGPYLVEAVT 467 (493)
T ss_pred cCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccCCCCchHHH--------HHHHhh--cCCCEEeecCCCCHHHHHH
Confidence 99999999999999999999999999999999 9999999 999998 9999999999999999999
Q ss_pred HHHHHHHHhhhhh
Q psy6272 391 ILKEILKKTESVL 403 (547)
Q Consensus 391 ~m~~I~~~aE~~~ 403 (547)
+|++|+.++|+++
T Consensus 468 ~l~~I~~~~e~~~ 480 (493)
T PRK08187 468 FLDDLLARMDGHQ 480 (493)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999873
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.96 E-value=8.4e-30 Score=227.95 Aligned_cols=116 Identities=37% Similarity=0.536 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecCCCCCCCCCCHHH
Q psy6272 423 AHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDC 502 (547)
Q Consensus 423 ~~~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~d~d~ 502 (547)
+|+++.+|+++|.+++|++||++|.||+||+++|||||.|||||+|++++++|||+|+|||+|+++... ..|.++
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~-----~~~~~~ 75 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEF-----DKDTEE 75 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSH-----SHSHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEeccc-----cccHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999998765 237999
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEEecccCC-CCCCcEEEEEE
Q psy6272 503 RVQFAIQHGMEIGIISPGDPLVLINGWRKG-AGFTNIMRVVY 543 (547)
Q Consensus 503 ~I~~a~~~~k~~g~~~~Gd~vvvv~g~~~g-~g~tntirv~~ 543 (547)
+++.++++++++|++++||.||++.|++.+ .|.||+|||++
T Consensus 76 ~~~~a~~~~~~~g~~~~gd~vVv~~g~~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 76 LIAEALEYAKERGLLKPGDKVVVVAGMPFGTPGGTNTIRVVR 117 (117)
T ss_dssp HHHHHHHHHHHTTSS-TTSEEEEEEESSTTTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEC
Confidence 999999999999999999999999999987 79999999985
No 20
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.73 E-value=1.7e-17 Score=167.37 Aligned_cols=137 Identities=19% Similarity=0.217 Sum_probs=119.9
Q ss_pred CCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHH--------------------------HHHhcCCCceEEEE
Q psy6272 233 NLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRG--------------------------MLEDHVDRVLILAK 286 (547)
Q Consensus 233 ~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~--------------------------~l~~~~~~i~Iiak 286 (547)
.+.++...|...|++++|.|+++|++|+|+|++|++++.+ |++..|.++.++++
T Consensus 65 ~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~ 144 (249)
T TIGR03239 65 PVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQ 144 (249)
T ss_pred cEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEE
Confidence 3556677889999999999999999999999999999863 55667889999999
Q ss_pred ecCHHHHhhHHHHHhh--cCEEEEcCCcccccCCh------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCccccccc
Q psy6272 287 IETLLGMEYMDEIIME--SDGVVLNRIQLAVATSV------EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDV 358 (547)
Q Consensus 287 IEt~~av~nldeIl~~--~DgImIargDLg~e~~~------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~ 358 (547)
|||++|++|++||+++ .|++++|++||+.++|. +++..+..+++.+|+++|||+++.+. + -
T Consensus 145 IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~~~-----~---~--- 213 (249)
T TIGR03239 145 IESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGILAP-----V---E--- 213 (249)
T ss_pred ECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEcCC-----C---H---
Confidence 9999999999999988 79999999999999996 57888999999999999999997432 2 1
Q ss_pred CccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 359 SIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 359 ~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
.++..++..|++.++++ .|+..
T Consensus 214 -----~~~~~~~~~G~~~~~~~-~D~~~ 235 (249)
T TIGR03239 214 -----ADARRYLEWGATFVAVG-SDLGV 235 (249)
T ss_pred -----HHHHHHHHcCCCEEEEh-HHHHH
Confidence 45567899999999999 88776
No 21
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.72 E-value=2.5e-17 Score=166.67 Aligned_cols=137 Identities=19% Similarity=0.244 Sum_probs=119.7
Q ss_pred CCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHH--------------------------HHHHhcCCCceEEEE
Q psy6272 233 NLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMR--------------------------GMLEDHVDRVLILAK 286 (547)
Q Consensus 233 ~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r--------------------------~~l~~~~~~i~Iiak 286 (547)
.+.+++..|...|++++|.|+++|++|+|+|+++++++. +|++..|.++.++++
T Consensus 72 ~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~ 151 (256)
T PRK10558 72 PVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQ 151 (256)
T ss_pred cEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEE
Confidence 455667788999999999999999999999999999984 356667889999999
Q ss_pred ecCHHHHhhHHHHHhh--cCEEEEcCCcccccCCh------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCccccccc
Q psy6272 287 IETLLGMEYMDEIIME--SDGVVLNRIQLAVATSV------EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDV 358 (547)
Q Consensus 287 IEt~~av~nldeIl~~--~DgImIargDLg~e~~~------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~ 358 (547)
|||++|++|++||+++ .|++|+|++||+.++|. +++..+..+++.+|+++|||+++... + -
T Consensus 152 IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~~~-----~---~--- 220 (256)
T PRK10558 152 IESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGILAP-----V---E--- 220 (256)
T ss_pred ECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEcCC-----C---H---
Confidence 9999999999999987 69999999999999986 57888999999999999999986422 2 2
Q ss_pred CccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 359 SIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 359 ~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
.++..++..|++.++++ .|+..
T Consensus 221 -----~~~~~~~~~G~~~v~~~-~D~~~ 242 (256)
T PRK10558 221 -----ADARRYLEWGATFVAVG-SDLGV 242 (256)
T ss_pred -----HHHHHHHHcCCCEEEEc-hHHHH
Confidence 44567889999999999 88776
No 22
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.71 E-value=7.4e-17 Score=164.09 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=118.0
Q ss_pred CCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHH---------------------------HHhcCCCceEEEE
Q psy6272 234 LPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGM---------------------------LEDHVDRVLILAK 286 (547)
Q Consensus 234 lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~---------------------------l~~~~~~i~Iiak 286 (547)
+.++...|...|++++|.|+++|++|+|+|+++++++.+. ++..|.++.++++
T Consensus 72 lVRvp~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~q 151 (267)
T PRK10128 72 VIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQ 151 (267)
T ss_pred EEECCCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEE
Confidence 4455667788999999999999999999999999998653 3445678999999
Q ss_pred ecCHHHHhhHHHHHhh--cCEEEEcCCcccccCCh------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCccccccc
Q psy6272 287 IETLLGMEYMDEIIME--SDGVVLNRIQLAVATSV------EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDV 358 (547)
Q Consensus 287 IEt~~av~nldeIl~~--~DgImIargDLg~e~~~------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~ 358 (547)
|||++|++|++||+++ .|++++|++||+.++|. +++..+.++++++|+++|||+++.+. + -
T Consensus 152 iEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~~~-----~---~--- 220 (267)
T PRK10128 152 VESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAV-----D---P--- 220 (267)
T ss_pred ECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEcCC-----C---H---
Confidence 9999999999999998 69999999999999996 68999999999999999999997422 1 2
Q ss_pred CccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 359 SIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 359 ~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
.++..++..|++.+.++ .|+..
T Consensus 221 -----~~a~~~~~~G~~~v~~g-~D~~~ 242 (267)
T PRK10128 221 -----DMAQKCLAWGANFVAVG-VDTML 242 (267)
T ss_pred -----HHHHHHHHcCCcEEEEC-hHHHH
Confidence 55677899999999999 88776
No 23
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.1e-16 Score=155.39 Aligned_cols=138 Identities=21% Similarity=0.254 Sum_probs=123.3
Q ss_pred cCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHH---------------------------HHHhcCCCceEE
Q psy6272 232 FNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRG---------------------------MLEDHVDRVLIL 284 (547)
Q Consensus 232 ~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~---------------------------~l~~~~~~i~Ii 284 (547)
.++.+++..+...|+.++|.|+..+.+|+|+|+|+.+.+.+ ||.+.|+++.++
T Consensus 69 ~pvVR~p~g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~l 148 (255)
T COG3836 69 PPVVRPPVGDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLL 148 (255)
T ss_pred CCeeeCCCCCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEE
Confidence 34556677899999999999999999999999999999853 778889999999
Q ss_pred EEecCHHHHhhHHHHHhh--cCEEEEcCCcccccCCh------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCccccc
Q psy6272 285 AKIETLLGMEYMDEIIME--SDGVVLNRIQLAVATSV------EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYS 356 (547)
Q Consensus 285 akIEt~~av~nldeIl~~--~DgImIargDLg~e~~~------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~ 356 (547)
+||||++|++|||+|+.+ .|||||||+||+.++|. ++|..+...++.+.+++||..++-+. +-
T Consensus 149 vqiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagil~~--------~p- 219 (255)
T COG3836 149 VQIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGILAA--------DP- 219 (255)
T ss_pred EEEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCccccccC--------CH-
Confidence 999999999999999999 69999999999999997 68999999999999999999987533 22
Q ss_pred ccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 357 DVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 357 ~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
.++..++..|+..+.+. .+|..
T Consensus 220 -------~~a~~yl~lGa~fvavG-~D~~l 241 (255)
T COG3836 220 -------ADARRYLALGATFVAVG-SDTGL 241 (255)
T ss_pred -------HHHHHHHHhCCeEEEEe-ccHHH
Confidence 56677899999999999 89877
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.63 E-value=1.1e-15 Score=154.09 Aligned_cols=136 Identities=15% Similarity=0.161 Sum_probs=114.2
Q ss_pred CCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHh---------------------------cCCCceEEEE
Q psy6272 234 LPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLED---------------------------HVDRVLILAK 286 (547)
Q Consensus 234 lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~---------------------------~~~~i~Iiak 286 (547)
+.++...|..+|+.++|.|+|+|++|+|+|+++++++.+++.. .|.++.++++
T Consensus 66 ~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~ 145 (249)
T TIGR02311 66 VVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQ 145 (249)
T ss_pred EEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEE
Confidence 3344555667899999999999999999999999999887631 1236889999
Q ss_pred ecCHHHHhhHHHHHhh--cCEEEEcCCcccccCCh------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCccccccc
Q psy6272 287 IETLLGMEYMDEIIME--SDGVVLNRIQLAVATSV------EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDV 358 (547)
Q Consensus 287 IEt~~av~nldeIl~~--~DgImIargDLg~e~~~------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~ 358 (547)
|||++|++|++||+++ .|++|+|++||+.++|. +++..+.+++.++|+++||+.++... .|
T Consensus 146 IEt~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~~---~~-------- 214 (249)
T TIGR02311 146 VETREALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILTA---DP-------- 214 (249)
T ss_pred ecCHHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecCC---CH--------
Confidence 9999999999999987 59999999999999997 46777888899999999999997432 22
Q ss_pred CccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 359 SIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 359 ~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
.+...++..|++.++++ .|+..
T Consensus 215 -----~~~~~~~~~G~~~~~~~-~D~~~ 236 (249)
T TIGR02311 215 -----KLARQYLKLGALFVAVG-VDTTL 236 (249)
T ss_pred -----HHHHHHHHcCCCEEEEc-hHHHH
Confidence 44566899999999999 88776
No 25
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.50 E-value=2.9e-14 Score=140.74 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=86.5
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhc-------CCCceEEEEecCHHHHhhHHHHHhh--cCEEEEcC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDH-------VDRVLILAKIETLLGMEYMDEIIME--SDGVVLNR 310 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~-------~~~i~IiakIEt~~av~nldeIl~~--~DgImIar 310 (547)
.-.+||+ +++.|+|+|++|+|+|+++++++.+++... +.++.++++|||++|++|++||++. .|++++|+
T Consensus 73 ~~~~Dl~-~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~ 151 (221)
T PF03328_consen 73 HIERDLE-ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGP 151 (221)
T ss_dssp HHHHHHH-HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-H
T ss_pred hhhhhhh-hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCc
Confidence 3355677 999999999999999999999999998654 3578999999999999999999965 39999999
Q ss_pred CcccccCCh------HHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 311 IQLAVATSV------EVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 311 gDLg~e~~~------e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
+||+.++|. +++..+..+++.+|+++|||++-
T Consensus 152 ~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~ 189 (221)
T PF03328_consen 152 ADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAID 189 (221)
T ss_dssp HHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEE
Confidence 999999997 47889999999999999997654
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.37 E-value=3.3e-12 Score=147.26 Aligned_cols=136 Identities=13% Similarity=0.163 Sum_probs=113.2
Q ss_pred CChhhHHHHHHHH-HcCCcE--EEEcccCChhhHHHHHHHHHhcC-----CCceEEEEecCHHHHhhHHHHHhhcCEEEE
Q psy6272 237 IADRDKHVVDLIV-REAVDI--IIMSSVTGANSIREMRGMLEDHV-----DRVLILAKIETLLGMEYMDEIIMESDGVVL 308 (547)
Q Consensus 237 lt~~D~~di~~~~-~~g~d~--I~~sfV~sa~di~~~r~~l~~~~-----~~i~IiakIEt~~av~nldeIl~~~DgImI 308 (547)
+=......|.+++ +.|+.. |++|||+|+++++++++.+...+ .++.++++||+++|+.|+|+|+++.|+++|
T Consensus 611 lf~~qlraI~ral~d~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisI 690 (782)
T TIGR01418 611 AFRLECRAIKRVREEMGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSI 690 (782)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEE
Confidence 3345677788888 899999 99999999999999999886532 348999999999999999999999999999
Q ss_pred cCCcccc-cCCh---------------HHHHHHHHHHHHHHHHcCCcEEEEcCCCC-CCCcccccccCccchhhHHHHHH
Q psy6272 309 NRIQLAV-ATSV---------------EVTFLAQKMIAARCNKQGKPFLVVGDILP-DHNVEEYSDVSIGDMNDVNSIVQ 371 (547)
Q Consensus 309 argDLg~-e~~~---------------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le-~PtraE~~~~~~~~~~Dv~nav~ 371 (547)
|++||+. .++. +.|..+.++++++|+++|||+++++++-. +| ..+...+.
T Consensus 691 GtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~p-------------~~~~~l~~ 757 (782)
T TIGR01418 691 GSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYP-------------EVVEFLVE 757 (782)
T ss_pred CchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCH-------------HHHHHHHH
Confidence 9999997 4432 67888999999999999999999776431 22 33455788
Q ss_pred hCccEEeeCCcchHH
Q psy6272 372 DGADVVVLTQSEQAH 386 (547)
Q Consensus 372 ~g~D~vmLsk~Eta~ 386 (547)
.|++.+.++ .++..
T Consensus 758 ~G~~~ls~~-~d~~~ 771 (782)
T TIGR01418 758 EGIDSISLN-PDAVL 771 (782)
T ss_pred cCCCEEEEC-cchHH
Confidence 899999999 77544
No 27
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.36 E-value=5.6e-12 Score=145.46 Aligned_cols=147 Identities=12% Similarity=0.133 Sum_probs=118.2
Q ss_pred CChhhHHHHHHHHH-cCCcE--EEEcccCChhhHHHHHHHHHhc-----CCCceEEEEecCHHHHhhHHHHHhhcCEEEE
Q psy6272 237 IADRDKHVVDLIVR-EAVDI--IIMSSVTGANSIREMRGMLEDH-----VDRVLILAKIETLLGMEYMDEIIMESDGVVL 308 (547)
Q Consensus 237 lt~~D~~di~~~~~-~g~d~--I~~sfV~sa~di~~~r~~l~~~-----~~~i~IiakIEt~~av~nldeIl~~~DgImI 308 (547)
+=......|.++++ .|++. |++|||+++++++++++++... +.+++++++|||++|+.|+|+|++++|+++|
T Consensus 618 lf~~qlraI~rald~~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~I 697 (795)
T PRK06464 618 AFALECEAIKRVREEMGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSI 697 (795)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEE
Confidence 33456778889999 79999 9999999999999999988544 2478999999999999999999999999999
Q ss_pred cCCcccc-cCCh---------------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCC-CCcccccccCccchhhHHHHHH
Q psy6272 309 NRIQLAV-ATSV---------------EVTFLAQKMIAARCNKQGKPFLVVGDILPD-HNVEEYSDVSIGDMNDVNSIVQ 371 (547)
Q Consensus 309 argDLg~-e~~~---------------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~-PtraE~~~~~~~~~~Dv~nav~ 371 (547)
|++||+. .+|. +.|..+.++++++|+++|||++++.++..+ |. .+...+.
T Consensus 698 GtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~~p~-------------~~~~l~~ 764 (795)
T PRK06464 698 GSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSDHPD-------------FAEWLVE 764 (795)
T ss_pred CchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCCcHH-------------HHHHHHH
Confidence 9999997 3442 688889999999999999999998765422 32 2344788
Q ss_pred hCccEEeeCCcchHHHHHHHHHHHHHHhhh
Q psy6272 372 DGADVVVLTQSEQAHHRVDILKEILKKTES 401 (547)
Q Consensus 372 ~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~ 401 (547)
.|++.+.++ .++.. .+...++++|+
T Consensus 765 ~G~~~ls~~-~d~~~----~~k~~i~~~~~ 789 (795)
T PRK06464 765 EGIDSISLN-PDAVV----DTWLAVAEVEK 789 (795)
T ss_pred CCCCEEEEc-chhHH----HHHHHHHHhHH
Confidence 899999999 76544 33334444444
No 28
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=99.28 E-value=6.3e-11 Score=122.10 Aligned_cols=155 Identities=19% Similarity=0.212 Sum_probs=115.1
Q ss_pred ChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhc-------CCCceEEEEecCHHHHhhHHHHHhh---cCEEE
Q psy6272 238 ADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDH-------VDRVLILAKIETLLGMEYMDEIIME---SDGVV 307 (547)
Q Consensus 238 t~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~-------~~~i~IiakIEt~~av~nldeIl~~---~DgIm 307 (547)
|.....||+..++.|+++|++|+|+++++++.+.+++... +.++.+++.|||++|+.|+++|+.. .||++
T Consensus 71 ~~~~~~di~~~l~~g~~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~ 150 (288)
T TIGR01588 71 TPFGLADIKAVVKAGVDVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIA 150 (288)
T ss_pred ChhHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEE
Confidence 3455788999999999999999999999999998877542 2468899999999999999999965 47999
Q ss_pred EcCCcccccCCh------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCC
Q psy6272 308 LNRIQLAVATSV------EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQ 381 (547)
Q Consensus 308 IargDLg~e~~~------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk 381 (547)
+|+.||+.++|. +.+..+..+++.+|+++|+|+|- +...+ +.|. .+-..+...+...|.++-+.=
T Consensus 151 ~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~id-~v~~~------~~d~-~~l~~~~~~~~~~Gf~Gk~~I- 221 (288)
T TIGR01588 151 LGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAFD-TVYSD------VNNE-EGFLAEAQLIKQLGFDGKSLI- 221 (288)
T ss_pred eCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCccc-CCccC------cCCH-HHHHHHHHHHHHcCCCceecc-
Confidence 999999999996 36888889999999999999864 33222 2000 011234457778898776664
Q ss_pred cchHH-----------HHHHHHHHHHHHhhh
Q psy6272 382 SEQAH-----------HRVDILKEILKKTES 401 (547)
Q Consensus 382 ~Eta~-----------eaV~~m~~I~~~aE~ 401 (547)
.+.=+ +-+++-.+|+...|+
T Consensus 222 HP~Qi~~in~~f~Ps~~ei~~A~~i~~a~~~ 252 (288)
T TIGR01588 222 NPRQIELVHKVYAPTEKEIDKAIEVIAAAEE 252 (288)
T ss_pred CHHHHHHHHHhcCcCHHHHHHHHHHHHHHHH
Confidence 33221 555555566555443
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=99.26 E-value=3.5e-11 Score=134.34 Aligned_cols=133 Identities=14% Similarity=0.114 Sum_probs=112.0
Q ss_pred CCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHh-----------cCCCceEEEEecCHHHHhhHHHHHhhc
Q psy6272 235 PVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLED-----------HVDRVLILAKIETLLGMEYMDEIIMES 303 (547)
Q Consensus 235 p~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~-----------~~~~i~IiakIEt~~av~nldeIl~~~ 303 (547)
|.+-......|.++++.|...|++|||+++++++++++++.. .+.++.+.++|||+.|+.++|+|++.+
T Consensus 366 ~~lf~~QlrAI~ra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~v 445 (565)
T TIGR01417 366 EEILRTQLRAILRASAYGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEV 445 (565)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhC
Confidence 444455677888999999999999999999999999987753 245789999999999999999999999
Q ss_pred CEEEEcCCccccc----------CCh------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH
Q psy6272 304 DGVVLNRIQLAVA----------TSV------EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN 367 (547)
Q Consensus 304 DgImIargDLg~e----------~~~------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~ 367 (547)
|+++||+.||+.. ++. +.|..+.++++++|+++||||.++..|--+| ..+.
T Consensus 446 Df~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p-------------~~~~ 512 (565)
T TIGR01417 446 DFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDE-------------RAIP 512 (565)
T ss_pred CEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCH-------------HHHH
Confidence 9999999999983 552 6888899999999999999999866532122 4556
Q ss_pred HHHHhCccEEeeC
Q psy6272 368 SIVQDGADVVVLT 380 (547)
Q Consensus 368 nav~~g~D~vmLs 380 (547)
.++..|++.+.++
T Consensus 513 ~l~~~G~~~lsv~ 525 (565)
T TIGR01417 513 LLLGLGLRELSMS 525 (565)
T ss_pred HHHHCCCCEEEEC
Confidence 7889999999998
No 30
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=99.18 E-value=2.2e-10 Score=128.10 Aligned_cols=135 Identities=14% Similarity=0.102 Sum_probs=113.1
Q ss_pred CCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHh-----------cCCCceEEEEecCHHHHhhHHHHHh
Q psy6272 233 NLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLED-----------HVDRVLILAKIETLLGMEYMDEIIM 301 (547)
Q Consensus 233 ~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~-----------~~~~i~IiakIEt~~av~nldeIl~ 301 (547)
+-|.+-...+..|.++.++|...|++|||.++++++++++.+.. .+.++.+.++|||+.|+.|+|+|++
T Consensus 365 ~~~~~f~~QlrAilra~~~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~ 444 (575)
T PRK11177 365 DRKEILHDQLRAILRASAFGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAK 444 (575)
T ss_pred CCHHHHHHHHHHHHHHHcCCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHh
Confidence 33444455677788999999999999999999999999887643 2467899999999999999999999
Q ss_pred hcCEEEEcCCcccccC-----C-----------hHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhh
Q psy6272 302 ESDGVVLNRIQLAVAT-----S-----------VEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMND 365 (547)
Q Consensus 302 ~~DgImIargDLg~e~-----~-----------~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~D 365 (547)
.+|+++||+.||+..+ + .+.|..+.++++++|+++||||.++.+|=.+|....
T Consensus 445 ~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A~dp~~~~----------- 513 (575)
T PRK11177 445 EVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGDERATL----------- 513 (575)
T ss_pred hCCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCHHHHH-----------
Confidence 9999999999999833 2 268888999999999999999999988755554333
Q ss_pred HHHHHHhCccEEeeC
Q psy6272 366 VNSIVQDGADVVVLT 380 (547)
Q Consensus 366 v~nav~~g~D~vmLs 380 (547)
-.+..|.|-+-.+
T Consensus 514 --lLlglGi~~lSm~ 526 (575)
T PRK11177 514 --LLLGMGLDEFSMS 526 (575)
T ss_pred --HHHHCCCCeEEEC
Confidence 3788899998887
No 31
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=98.64 E-value=1.2e-07 Score=97.40 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=119.5
Q ss_pred ChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCce---EEEEecCHHHHhhHHHHHhhc---CEEEEcCC
Q psy6272 238 ADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVL---ILAKIETLLGMEYMDEIIMES---DGVVLNRI 311 (547)
Q Consensus 238 t~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~---IiakIEt~~av~nldeIl~~~---DgImIarg 311 (547)
|+.-..|+...+..++|+|.+|+|+++.++..+...+.+...... +++.|||++|+.|..+|...+ .|+.+|-.
T Consensus 66 t~~g~~Dl~av~~~~~d~v~LPK~e~~~~v~~~~~~l~~~~~~~~~~~l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~ 145 (283)
T COG2301 66 TPWGADDLAAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVLNAEEIAAASGRLVGLAFGAN 145 (283)
T ss_pred ChhhHHHHHHHHhcCCCEEEccCcCchHHHHHHHHHhhhhhccccchhhHHhhhcHHHHhCHHHHhcCccceeeeEecHH
Confidence 446788899999999999999999999999999999976654444 999999999999999999997 89999999
Q ss_pred cccccCCh-------HHHHHHHHHHHHHHHHcCCcEEEEcCCCC--CCCcccccccCccchhhHHHHHHhCccEEeeCCc
Q psy6272 312 QLAVATSV-------EVTFLAQKMIAARCNKQGKPFLVVGDILP--DHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQS 382 (547)
Q Consensus 312 DLg~e~~~-------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le--~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~ 382 (547)
||..++|. +.+..+..+|+.+|+.+|++.+. +-.-+ +|.. -..+..++...|.|+-++= .
T Consensus 146 Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D-~V~~d~~d~~g---------~~~e~~~a~~~Gf~GK~~I-H 214 (283)
T COG2301 146 DLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAID-GVYTDINDPEG---------FAREAAQAAALGFDGKTCI-H 214 (283)
T ss_pred HHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCccc-ccccccCCHHH---------HHHHHHHHHHcCCCccccc-C
Confidence 99999986 26777999999999999999864 22211 3332 1256778889998887774 3
Q ss_pred chHH-----------HHHHHHHHHHHHhhh
Q psy6272 383 EQAH-----------HRVDILKEILKKTES 401 (547)
Q Consensus 383 Eta~-----------eaV~~m~~I~~~aE~ 401 (547)
+.=+ +-|.+-.+|+..+++
T Consensus 215 P~QI~~vn~af~Ps~~ev~~Ar~Il~a~~~ 244 (283)
T COG2301 215 PSQIEVVNRAFSPSEEEVAWARRVLEAAAA 244 (283)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 3222 555555566555554
No 32
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=98.46 E-value=1.4e-06 Score=90.22 Aligned_cols=135 Identities=18% Similarity=0.209 Sum_probs=103.4
Q ss_pred CCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhc-----------CCCceEEEEecCHHHHhhHHHHHhhc
Q psy6272 235 PVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDH-----------VDRVLILAKIETLLGMEYMDEIIMES 303 (547)
Q Consensus 235 p~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~-----------~~~i~IiakIEt~~av~nldeIl~~~ 303 (547)
|.+-......|.+|..+|==.|++|||++.+++.++++++++. +.++++-++||++.++--+|++++.+
T Consensus 119 p~~f~~QlrAilra~~~g~l~Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal~~~~~~~~~ 198 (293)
T PF02896_consen 119 PELFRTQLRAILRAAAEGNLRIMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAALMADEFAKEV 198 (293)
T ss_dssp HHHHHHHHHHHHHHHHHSEEEEEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHHTHHHHHTTS
T ss_pred hhhHHHHHHHHHHHHhhcCCEEEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHHHHHHHHHHC
Confidence 5555567777888888887789999999999999999987554 35689999999999999999999999
Q ss_pred CEEEEcCCcccc-----cCC-----------hHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH
Q psy6272 304 DGVVLNRIQLAV-----ATS-----------VEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN 367 (547)
Q Consensus 304 DgImIargDLg~-----e~~-----------~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~ 367 (547)
|.+-||-.||.. +=. .+-+....++++++|+++||||.++.+|-.+|.. +.
T Consensus 199 DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a~~p~~-------------~~ 265 (293)
T PF02896_consen 199 DFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMASDPEA-------------IP 265 (293)
T ss_dssp SEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGGGSHHH-------------HH
T ss_pred CEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCCCCHHH-------------HH
Confidence 999999999732 111 1567778889999999999999999986543333 34
Q ss_pred HHHHhCccEEeeCCcc
Q psy6272 368 SIVQDGADVVVLTQSE 383 (547)
Q Consensus 368 nav~~g~D~vmLsk~E 383 (547)
-.+..|.|.+-.+ ..
T Consensus 266 ~Ll~lGi~~lSv~-p~ 280 (293)
T PF02896_consen 266 LLLGLGIRSLSVS-PD 280 (293)
T ss_dssp HHHHHT-SEEEE--GG
T ss_pred HHHHcCCCEEEEC-HH
Confidence 4788999999998 54
No 33
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.17 E-value=1.3e-05 Score=88.40 Aligned_cols=154 Identities=12% Similarity=0.055 Sum_probs=108.2
Q ss_pred CCCCcCCCCCChhhHHHHHHHHHcC--CcEEEEcccCChhhHHHHHHHHHhcC-------CCceEEEEecCHHHHhhHHH
Q psy6272 228 PRVTFNLPVIADRDKHVVDLIVREA--VDIIIMSSVTGANSIREMRGMLEDHV-------DRVLILAKIETLLGMEYMDE 298 (547)
Q Consensus 228 p~~~~~lp~lt~~D~~di~~~~~~g--~d~I~~sfV~sa~di~~~r~~l~~~~-------~~i~IiakIEt~~av~nlde 298 (547)
|+.-+|.-. --.+|++..++.| + +|.+|++++++|++.+.+.+.... ..+++.+.|||..|+-|++|
T Consensus 162 ~~~l~Dfgl---~~fhd~~~l~~~g~gp-yi~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~E 237 (511)
T cd00727 162 SGSLFDFGL---YFFHNAKALLARGSGP-YFYLPKMESHLEARLWNDVFVFAQDYLGLPRGTIKATVLIETLPAAFEMDE 237 (511)
T ss_pred cchhhhHHH---HHHhhHHHHHhcCCCc-EEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCHHHHHHHHH
Confidence 444455422 3345566666665 7 999999999999999998885422 46899999999999999999
Q ss_pred HHhhc----CEEEEcCCcccccCCh--------------------HHHHHHHHHHHHHHHHcCCcEEEEcCCCC-CCCc-
Q psy6272 299 IIMES----DGVVLNRIQLAVATSV--------------------EVTFLAQKMIAARCNKQGKPFLVVGDILP-DHNV- 352 (547)
Q Consensus 299 Il~~~----DgImIargDLg~e~~~--------------------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le-~Ptr- 352 (547)
|+..+ .|+..||.|+..+++. +-+...++.++.+|+++|+..|-. |-- .|.+
T Consensus 238 Ia~alr~Rl~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~a~G~~AIdG--m~a~ip~kd 315 (511)
T cd00727 238 ILYELRDHSAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCHRRGAHAMGG--MAAQIPIKD 315 (511)
T ss_pred HHHhccCceEEEEcChHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHHHcCCCcccc--hhhcCCccc
Confidence 99774 6999999999988821 233344777999999999998763 211 3322
Q ss_pred cc-cccc-CccchhhHHHHHHhCccEEeeCCcchHHHH
Q psy6272 353 EE-YSDV-SIGDMNDVNSIVQDGADVVVLTQSEQAHHR 388 (547)
Q Consensus 353 aE-~~~~-~~~~~~Dv~nav~~g~D~vmLsk~Eta~ea 388 (547)
.+ ...- =.+-..|......+|.|+-++- .++.++.
T Consensus 316 d~~~n~~~l~~~r~dk~~~~~lGfDGkwvi-HP~qV~i 352 (511)
T cd00727 316 DPAANEAALAKVRADKLREATAGHDGTWVA-HPGLVPV 352 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHhCCCCccccc-CHHHHHH
Confidence 11 0000 0001256668889999999998 7777633
No 34
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=98.04 E-value=1.4e-05 Score=88.50 Aligned_cols=133 Identities=16% Similarity=0.120 Sum_probs=96.7
Q ss_pred CCcEEEEcccCChhhHHHHHHHHHhcC-------CCceEEEEecCHHHHhhHHHHHhhc----CEEEEcCCcccccCCh-
Q psy6272 252 AVDIIIMSSVTGANSIREMRGMLEDHV-------DRVLILAKIETLLGMEYMDEIIMES----DGVVLNRIQLAVATSV- 319 (547)
Q Consensus 252 g~d~I~~sfV~sa~di~~~r~~l~~~~-------~~i~IiakIEt~~av~nldeIl~~~----DgImIargDLg~e~~~- 319 (547)
+-=+|.+|+++++++++.+.+.+.... ..+++++.|||..|+-|++||+... .|+..|+.|+..+++.
T Consensus 184 ~gpyi~LPKves~~Ev~~~~~~~~~~E~~~gl~~gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~ 263 (511)
T cd00480 184 SGPYFYLPKMESPLEARLWNDVFSRAEDYLGLPRGTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKT 263 (511)
T ss_pred CCcEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccc
Confidence 344899999999999999998875432 3589999999999999999999873 4999999999998852
Q ss_pred -------------------HHHHHHHHHHHHHHHHcCCcEEEE--cCCC-C-CCCcccccccCccchhhHHHHHHhCccE
Q psy6272 320 -------------------EVTFLAQKMIAARCNKQGKPFLVV--GDIL-P-DHNVEEYSDVSIGDMNDVNSIVQDGADV 376 (547)
Q Consensus 320 -------------------e~v~~~qk~ii~~c~~~gKPvi~a--Tq~L-e-~PtraE~~~~~~~~~~Dv~nav~~g~D~ 376 (547)
+-+..+++.++.+|+++|.+.|-. .++- . +|..-+. | -.+-..|...+...|+|+
T Consensus 264 ~~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~a~G~~AIdg~~a~i~~k~d~~~~~~-d-~~gl~~dk~~~~~~GfdG 341 (511)
T cd00480 264 FRNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCHRRGAHAMGGMAAQIPIKGDPAANEA-A-MAKVRADKLREAKAGHDG 341 (511)
T ss_pred cccCccccCCcccccccccHHHHHHHHHHHHHHHHcCCCccccchhhccccCCcccchh-H-HHHHHHHHHHHHhCCCCc
Confidence 125567888999999999987532 2211 0 1111000 0 001124556888899999
Q ss_pred EeeCCcchHHH
Q psy6272 377 VVLTQSEQAHH 387 (547)
Q Consensus 377 vmLsk~Eta~e 387 (547)
-+.- .++.++
T Consensus 342 kwvi-HP~qV~ 351 (511)
T cd00480 342 TWVA-HPGLAP 351 (511)
T ss_pred cccc-CHHHHH
Confidence 9988 776663
No 35
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=98.03 E-value=4.1e-05 Score=84.47 Aligned_cols=157 Identities=13% Similarity=0.094 Sum_probs=107.2
Q ss_pred CCCCcCCCCCChhhHHHHHHHHHcC-CcEEEEcccCChhhHHHHHHHHHhcC-------CCceEEEEecCHHHHhhHHHH
Q psy6272 228 PRVTFNLPVIADRDKHVVDLIVREA-VDIIIMSSVTGANSIREMRGMLEDHV-------DRVLILAKIETLLGMEYMDEI 299 (547)
Q Consensus 228 p~~~~~lp~lt~~D~~di~~~~~~g-~d~I~~sfV~sa~di~~~r~~l~~~~-------~~i~IiakIEt~~av~nldeI 299 (547)
|+.-+|.-.. -..|++..++.| --+|.+|+|++++|++.+.+.+.... ..+++.+.|||..|+-|++||
T Consensus 163 ~~~l~Dfgl~---~~hd~~~l~~~g~Gp~i~LPKves~~Ev~~~~~vf~~aE~~lglp~gtIk~~vlIET~~A~~nm~EI 239 (511)
T TIGR01344 163 PGSLFDFGLY---FFHNARALLKKGKGPYFYLPKLESHQEARLWNDVFHFAQDFLGLPRGTIKATVLIETLPAAFEMDEI 239 (511)
T ss_pred chHHHHHHHH---HHhhHHHHHhCCCCCEEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCceeEEEEecCHHHHHhHHHH
Confidence 3444454332 344555556663 35999999999999999988875421 458899999999999999999
Q ss_pred Hhh----cCEEEEcCCcccccCC----h----------------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCc-c-
Q psy6272 300 IME----SDGVVLNRIQLAVATS----V----------------EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNV-E- 353 (547)
Q Consensus 300 l~~----~DgImIargDLg~e~~----~----------------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~Ptr-a- 353 (547)
+.. ..|+..||.|+..++. . +-+..+++.++.+|+++|+.+|-.---+ .|.+ .
T Consensus 240 a~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aara~G~~AIdGm~a~-ip~k~D~ 318 (511)
T TIGR01344 240 LYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCHRRGAHAMGGMAAF-IPIKGDP 318 (511)
T ss_pred HHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHHHcCCCccCchhcc-CCcccCh
Confidence 976 3699999999994444 1 3444568888899999999998632001 2332 1
Q ss_pred ccccc-CccchhhHHHHHHhCccEEeeCCcchHHHHH
Q psy6272 354 EYSDV-SIGDMNDVNSIVQDGADVVVLTQSEQAHHRV 389 (547)
Q Consensus 354 E~~~~-~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV 389 (547)
|..+. =.+...|-.....+|.|+-++- .++.++.+
T Consensus 319 ~~n~~al~~vr~dk~re~~lGfDGkwvi-HP~qV~ia 354 (511)
T TIGR01344 319 AANEAAMNKVRADKIREAKNGHDGTWVA-HPDLVPIA 354 (511)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCCccccC-CHHHHHHH
Confidence 11000 0001255567889999999998 88776333
No 36
>PRK09255 malate synthase; Validated
Probab=97.97 E-value=2.8e-05 Score=86.14 Aligned_cols=141 Identities=15% Similarity=0.088 Sum_probs=100.6
Q ss_pred HHHHHHHH--HcCCcEEEEcccCChhhHHHHHHHHHhc----C---CCceEEEEecCHHHHhhHHHHHhhc----CEEEE
Q psy6272 242 KHVVDLIV--REAVDIIIMSSVTGANSIREMRGMLEDH----V---DRVLILAKIETLLGMEYMDEIIMES----DGVVL 308 (547)
Q Consensus 242 ~~di~~~~--~~g~d~I~~sfV~sa~di~~~r~~l~~~----~---~~i~IiakIEt~~av~nldeIl~~~----DgImI 308 (547)
..|++..+ ..|+ +|.+|++++++|++.+.+.+... | ..+++.+.|||..|+-|++||+..+ .|+..
T Consensus 194 fhd~~~l~~~g~gp-~i~LPKves~~Ev~~~~~vf~~~E~~lGlp~GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~ 272 (531)
T PRK09255 194 FHNAKELLAKGSGP-YFYLPKLESHLEARLWNDVFVFAEDRLGLPRGTIKATVLIETLPAAFEMDEILYELREHIAGLNC 272 (531)
T ss_pred HhhHHHHHhCCCCc-EEeccCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecCHHHHHHHHHHHHhccCceEEEEc
Confidence 34444444 4567 99999999999999999988542 2 4689999999999999999999774 59999
Q ss_pred cCCccccc----CCh----------------HHHHHHHHHHHHHHHHcCCcEEEEcCCCC-CCCc--cccccc-Cccchh
Q psy6272 309 NRIQLAVA----TSV----------------EVTFLAQKMIAARCNKQGKPFLVVGDILP-DHNV--EEYSDV-SIGDMN 364 (547)
Q Consensus 309 argDLg~e----~~~----------------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le-~Ptr--aE~~~~-~~~~~~ 364 (547)
||.|+..+ ++. +-+...++.++.+|+++|+..|-. |.- .|.+ .|.... =.+-..
T Consensus 273 G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aara~G~~AIdG--m~a~ip~k~D~~~n~~a~~g~r~ 350 (531)
T PRK09255 273 GRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCHKRGAHAMGG--MAAFIPIKNDPEANEAALAKVRA 350 (531)
T ss_pred ChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHHHcCCCccCc--hhhcCCcccChhhhHHHHHHHHH
Confidence 99999965 221 334445888889999999998762 311 3422 010000 001124
Q ss_pred hHHHHHHhCccEEeeCCcchHH
Q psy6272 365 DVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 365 Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
|......+|.|+-++- .++.+
T Consensus 351 dk~r~~~lGfDGkwvi-HP~qV 371 (531)
T PRK09255 351 DKEREANDGHDGTWVA-HPGLV 371 (531)
T ss_pred HHHHHHhCCCCcceec-CHHHH
Confidence 5568889999999998 77766
No 37
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=97.68 E-value=0.00014 Score=84.38 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=101.4
Q ss_pred hhHHHHHHHHH-cCCcEEEEcccCChhhHHHHHHHHHh--------cC---CCceEEEEecCHHHHhhHHHHHhhcCEEE
Q psy6272 240 RDKHVVDLIVR-EAVDIIIMSSVTGANSIREMRGMLED--------HV---DRVLILAKIETLLGMEYMDEIIMESDGVV 307 (547)
Q Consensus 240 ~D~~di~~~~~-~g~d~I~~sfV~sa~di~~~r~~l~~--------~~---~~i~IiakIEt~~av~nldeIl~~~DgIm 307 (547)
.....|.+|.. +|-=.|++|||.+.+++.++|+.+++ .| .++.+=++||+|.|+--+|++++.+|.+=
T Consensus 537 ~QlrAilra~~~~g~l~im~Pmv~~~~E~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~MiE~Paa~~~~~~~a~~~DF~S 616 (748)
T PRK11061 537 IQVRAMLRANAATGNLSILLPMVTSIDEVDEARRLIDRAGREVEEMLGYEIPKPRIGIMIEVPSMVFMLPHLASRVDFIS 616 (748)
T ss_pred HHHHHHHHHHhhCCCeEEEhhcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEEehHHHHHHHHHHHHhCCEEE
Confidence 34455555554 56668999999999999999988753 12 24779999999999999999999999999
Q ss_pred EcCCcccc-----cCC-----------hHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHH
Q psy6272 308 LNRIQLAV-----ATS-----------VEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQ 371 (547)
Q Consensus 308 IargDLg~-----e~~-----------~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~ 371 (547)
||-.||.. +=+ .+-|-.+.++++++|+++||||.++.+|=.+|....+ .+.
T Consensus 617 IGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vCGe~a~dp~~~~~-------------L~g 683 (748)
T PRK11061 617 VGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLCGEMAGDPMGALL-------------LIG 683 (748)
T ss_pred ECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEcCCcccCHHHHHH-------------HHH
Confidence 99999753 211 1567778889999999999999999987655554444 788
Q ss_pred hCccEEeeC
Q psy6272 372 DGADVVVLT 380 (547)
Q Consensus 372 ~g~D~vmLs 380 (547)
.|.|.+-.+
T Consensus 684 lGi~~lS~~ 692 (748)
T PRK11061 684 LGYRHLSMN 692 (748)
T ss_pred CCCcEEccC
Confidence 899988777
No 38
>PLN02626 malate synthase
Probab=97.38 E-value=0.0017 Score=72.04 Aligned_cols=145 Identities=14% Similarity=0.066 Sum_probs=101.4
Q ss_pred HHHHHHHHHc--CC-cEEEEcccCChhhHHHHHHHHHhc-------CCCceEEEEecCHHHHhhHHHHHhhc----CEEE
Q psy6272 242 KHVVDLIVRE--AV-DIIIMSSVTGANSIREMRGMLEDH-------VDRVLILAKIETLLGMEYMDEIIMES----DGVV 307 (547)
Q Consensus 242 ~~di~~~~~~--g~-d~I~~sfV~sa~di~~~r~~l~~~-------~~~i~IiakIEt~~av~nldeIl~~~----DgIm 307 (547)
..+.+..++. |- -||.+|+++++++++...+.+... ...+++.+.|||..|+-|++||+..+ -|+.
T Consensus 198 fhn~~~l~~~~~GsgpYfyLPKles~~Ear~w~dvf~~~E~~lGlp~GTIK~~vLIET~~A~f~meEIl~elr~r~agLn 277 (551)
T PLN02626 198 FHNYAAFRAKQGGFGPFFYLPKMEHSREARLWNDVFEAAEKMAGIPRGSIRATVLIETLPAVFQMEEILYELRDHSAGLN 277 (551)
T ss_pred HhhHHHHHhccCCCCceEeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEEeccHHHHHHHHHHHHHhhhheeeee
Confidence 3334444555 43 599999999999999998877432 24689999999999999999999775 5999
Q ss_pred EcCCcc----cccC----------------ChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC-CCCcc--ccc-ccCccch
Q psy6272 308 LNRIQL----AVAT----------------SVEVTFLAQKMIAARCNKQGKPFLVVGDILP-DHNVE--EYS-DVSIGDM 363 (547)
Q Consensus 308 IargDL----g~e~----------------~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le-~Ptra--E~~-~~~~~~~ 363 (547)
.||-|+ ...+ ..+-+..+.+.++..|+++|...|-. |-- .|.+. +.. +--.+-.
T Consensus 278 ~GrwDyifS~ik~l~~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach~rG~~AIgG--M~a~iP~kdd~~~n~~al~~vr 355 (551)
T PLN02626 278 CGRWDYIFSFVKTFRAHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCHKRGVHAMGG--MAAQIPIKDDPAANEAALALVR 355 (551)
T ss_pred cChHHHHhHHHHHhccCCCCCCCCccccchhhHHHHHHHHHHHHHHHhcCCccccc--ccccccCCCChhhhHHHHHHHH
Confidence 999999 2222 22334456669999999999997652 222 44321 110 0001112
Q ss_pred hhHHHHHHhCccEEeeCCcchHHHHH
Q psy6272 364 NDVNSIVQDGADVVVLTQSEQAHHRV 389 (547)
Q Consensus 364 ~Dv~nav~~g~D~vmLsk~Eta~eaV 389 (547)
.|-.....+|+|+-++. .++.++.+
T Consensus 356 ~dk~re~~~GfDG~wVi-HP~~V~~~ 380 (551)
T PLN02626 356 KDKLREVRAGHDGTWAA-HPGLIPLA 380 (551)
T ss_pred HHHHHHHhcCCCceeec-ChhHHHHH
Confidence 45568889999999999 88877443
No 39
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=97.25 E-value=0.0021 Score=75.61 Aligned_cols=134 Identities=16% Similarity=0.102 Sum_probs=100.7
Q ss_pred CCCCChhhHHHHHHHHHc----CCc---EEEEcccCChhhHHHHHHHHHhc--------C--CCceEEEEecCHHHHhhH
Q psy6272 234 LPVIADRDKHVVDLIVRE----AVD---IIIMSSVTGANSIREMRGMLEDH--------V--DRVLILAKIETLLGMEYM 296 (547)
Q Consensus 234 lp~lt~~D~~di~~~~~~----g~d---~I~~sfV~sa~di~~~r~~l~~~--------~--~~i~IiakIEt~~av~nl 296 (547)
-|.+-+-....|-.|... |.. -|++|||.+.++++.+|+.+.+. | .++.|=++||++.|.-.+
T Consensus 669 ~pei~~~QlrAil~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~k~~i~~~~~~l~~~~g~~~~~~iG~MiE~P~aal~a 748 (856)
T TIGR01828 669 YPEIYEMQVRAIMEAAVEVKKEGIDVHPEIMIPLVGEKNELKILKDVLEEVAAEVFKEYGVTVPYEIGTMIEIPRAALTA 748 (856)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhcCCccCCeEEEEEehHHHHHHH
Confidence 344445556666555444 643 79999999999999999877532 2 247899999999999999
Q ss_pred HHHHhhcCEEEEcCCccccc------------C------------C-----hHHHHHHHHHHHHHHHH--cCCcEEEEcC
Q psy6272 297 DEIIMESDGVVLNRIQLAVA------------T------------S-----VEVTFLAQKMIAARCNK--QGKPFLVVGD 345 (547)
Q Consensus 297 deIl~~~DgImIargDLg~e------------~------------~-----~e~v~~~qk~ii~~c~~--~gKPvi~aTq 345 (547)
|+|++.+|.+-||-.||..- + | .+-|....+++++.|++ +|+||.++.+
T Consensus 749 d~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i~~a~~~~~~~~vgvCGE 828 (856)
T TIGR01828 749 DKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAVEKGRQTRPNLKVGICGE 828 (856)
T ss_pred HHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHHHHHhhcCCCCEEEeCCC
Confidence 99999999999998887421 1 1 13466677889999998 8999999887
Q ss_pred CCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 346 ILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 346 ~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+--+|.- +.-.+..|.|-+-.|
T Consensus 829 ~a~dp~~-------------i~~l~~~Gi~~~S~s 850 (856)
T TIGR01828 829 HGGDPSS-------------IEFCHKIGLNYVSCS 850 (856)
T ss_pred CcCCHHH-------------HHHHHHCCCCEEEEC
Confidence 5334433 334777899999887
No 40
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.19 E-value=0.0059 Score=65.52 Aligned_cols=122 Identities=17% Similarity=0.192 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHcCCcEEEEcc-------cCChhhHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhhcCEEEEcCC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSS-------VTGANSIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIMESDGVVLNRI 311 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sf-------V~sa~di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~~DgImIarg 311 (547)
...+.++.+++.|+|+|.+.. ..++.+...+.+.+.+. ++.||+ .|-|.+....+-+ .=+|+||+|+|
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~--~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G 217 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL--DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIG 217 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCC
Confidence 346667888999999999954 33333556666666653 578887 8888888877754 45899999988
Q ss_pred ccccc-------CChHHHHHHHHHHHHHHHHc-------CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEE
Q psy6272 312 QLAVA-------TSVEVTFLAQKMIAARCNKQ-------GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVV 377 (547)
Q Consensus 312 DLg~e-------~~~e~v~~~qk~ii~~c~~~-------gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~v 377 (547)
-=+.. ++.+.+..+. ...+.++++ ++|||.+..+- .- .|++.|+..|||++
T Consensus 218 ~Gs~~~t~~~~g~g~p~~~ai~-~~~~a~~~~l~~~~~~~vpVIAdGGI~------~~--------~diakAlalGAd~V 282 (368)
T PRK08649 218 PGAACTSRGVLGIGVPMATAIA-DVAAARRDYLDETGGRYVHVIADGGIG------TS--------GDIAKAIACGADAV 282 (368)
T ss_pred CCcCCCCcccCCCCcCHHHHHH-HHHHHHHHhhhhhcCCCCeEEEeCCCC------CH--------HHHHHHHHcCCCee
Confidence 52111 1222222111 122233332 68999887642 24 89999999999999
Q ss_pred eeC
Q psy6272 378 VLT 380 (547)
Q Consensus 378 mLs 380 (547)
|+.
T Consensus 283 m~G 285 (368)
T PRK08649 283 MLG 285 (368)
T ss_pred ccc
Confidence 998
No 41
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=97.13 E-value=0.011 Score=63.10 Aligned_cols=125 Identities=21% Similarity=0.267 Sum_probs=86.1
Q ss_pred ChhhHHHHHHHHHcCCcEEEE--cccCChhhHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhhcCEEEEcCCccc
Q psy6272 238 ADRDKHVVDLIVREAVDIIIM--SSVTGANSIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIMESDGVVLNRIQLA 314 (547)
Q Consensus 238 t~~D~~di~~~~~~g~d~I~~--sfV~sa~di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~~DgImIargDLg 314 (547)
.+.+.+.++..++.|+|+|++ +...+...+..++.+ .+...++.||+ -|-|.++.++|- -.-+|+|-||=|==+
T Consensus 106 ~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~i-k~~~~~~~viaGNV~T~e~a~~L~--~aGad~vkVGiGpGs 182 (352)
T PF00478_consen 106 RDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKI-KKKFPDVPVIAGNVVTYEGAKDLI--DAGADAVKVGIGPGS 182 (352)
T ss_dssp STCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHH-HHHSTTSEEEEEEE-SHHHHHHHH--HTT-SEEEESSSSST
T ss_pred CHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHH-HHhCCCceEEecccCCHHHHHHHH--HcCCCEEEEeccCCc
Confidence 446788888899999999988 577777777666654 44444666665 799999999973 334899999865322
Q ss_pred cc-------CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 315 VA-------TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 315 ~e-------~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+- +|.+.+- +.-++.+.|+++++|+|--..+ --- .|++.|+..|||+||+.
T Consensus 183 iCtTr~v~GvG~PQ~t-Av~~~a~~a~~~~v~iIADGGi------~~s--------GDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 183 ICTTREVTGVGVPQLT-AVYECAEAARDYGVPIIADGGI------RTS--------GDIVKALAAGADAVMLG 240 (352)
T ss_dssp TBHHHHHHSBSCTHHH-HHHHHHHHHHCTTSEEEEESS-------SSH--------HHHHHHHHTT-SEEEES
T ss_pred ccccccccccCCcHHH-HHHHHHHHhhhccCceeecCCc------Ccc--------cceeeeeeecccceeec
Confidence 11 1233333 4445888889999999975442 134 99999999999999997
No 42
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=96.72 E-value=0.029 Score=62.75 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=105.2
Q ss_pred CCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHh-------c----CCCceEEEEecCHHHHhhHHHHHh
Q psy6272 233 NLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLED-------H----VDRVLILAKIETLLGMEYMDEIIM 301 (547)
Q Consensus 233 ~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~-------~----~~~i~IiakIEt~~av~nldeIl~ 301 (547)
+-|.+-......|.+|-.+|-=.|++|+|-+.++++.+++.+.+ . ++++.+=.+||+|.|.-..|.+++
T Consensus 366 ~~~~if~tQLRAilRAS~~G~l~IM~PMI~~~~Ei~~~k~~~~~~k~~Lr~eg~~~~~~i~lGiMIEvPsAa~~a~~lak 445 (574)
T COG1080 366 ERPEIFRTQLRAILRASAHGNLRIMFPMIASLEEIRWAKALLEEAKQELRAEGLAFDEKIELGIMIEVPSAALIADQLAK 445 (574)
T ss_pred ccHHHHHHHHHHHHHhhccCCeEEEEeccccHHHHHHHHHHHHHHHHHHHhcCCccccccceeEEEehhHHHHHHHHHHH
Confidence 33444445566777888899999999999999999999988742 1 236788889999999999999999
Q ss_pred hcCEEEEcCCccc-----ccCCh-----------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhh
Q psy6272 302 ESDGVVLNRIQLA-----VATSV-----------EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMND 365 (547)
Q Consensus 302 ~~DgImIargDLg-----~e~~~-----------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~D 365 (547)
.+|-+=||-.||. ++=+- +-|-...++++..++++||||+++..|=-+|.-
T Consensus 446 evDFfSIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgmCGElAgD~~a------------- 512 (574)
T COG1080 446 EVDFFSIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGMCGELAGDPAA------------- 512 (574)
T ss_pred hCCEeeecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeeechhhccChhh-------------
Confidence 9999999999975 32222 456667788999999999999998775433332
Q ss_pred HHHHHHhCccEEeeC
Q psy6272 366 VNSIVQDGADVVVLT 380 (547)
Q Consensus 366 v~nav~~g~D~vmLs 380 (547)
+--.+-.|.|=+-+|
T Consensus 513 ~plLlGlGldElSms 527 (574)
T COG1080 513 TPLLLGLGLDELSMS 527 (574)
T ss_pred HHHHHhcCcchhccC
Confidence 234677888887777
No 43
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=96.62 E-value=0.042 Score=58.05 Aligned_cols=126 Identities=23% Similarity=0.316 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHHcCCcEEEEcccC-ChhhHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhhcCEEEEc--CCcc
Q psy6272 238 ADRDKHVVDLIVREAVDIIIMSSVT-GANSIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIMESDGVVLN--RIQL 313 (547)
Q Consensus 238 t~~D~~di~~~~~~g~d~I~~sfV~-sa~di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~~DgImIa--rgDL 313 (547)
++.+.+.+...++.|+|+|.+++-. +.+...++.+.+.+...++.|++ .+.|.+...++.+ .=+|+|.++ +|--
T Consensus 92 ~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~--aGaD~I~vg~g~G~~ 169 (325)
T cd00381 92 REDDKERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLID--AGADGVKVGIGPGSI 169 (325)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHh--cCCCEEEECCCCCcC
Confidence 3567888899999999999986632 22334444444544444677776 7777776665532 238999984 3221
Q ss_pred c-----ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 314 A-----VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 314 g-----~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
. ...+.+.+. +-..+.+.|+..++|||.+..+- .- .|++.++..|||++|+.
T Consensus 170 ~~t~~~~g~g~p~~~-~i~~v~~~~~~~~vpVIA~GGI~------~~--------~di~kAla~GA~~VmiG 226 (325)
T cd00381 170 CTTRIVTGVGVPQAT-AVADVAAAARDYGVPVIADGGIR------TS--------GDIVKALAAGADAVMLG 226 (325)
T ss_pred cccceeCCCCCCHHH-HHHHHHHHHhhcCCcEEecCCCC------CH--------HHHHHHHHcCCCEEEec
Confidence 1 011223332 33346667777899999766532 23 89999999999999997
No 44
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=96.55 E-value=0.053 Score=57.45 Aligned_cols=127 Identities=17% Similarity=0.125 Sum_probs=83.7
Q ss_pred CCChhhHHHHHHHHHcC--CcEEEEcccC--ChhhHHHHHHHHHhcCCCceEEEE-ecCHHHHhhHHHHHhhcCEEEEc-
Q psy6272 236 VIADRDKHVVDLIVREA--VDIIIMSSVT--GANSIREMRGMLEDHVDRVLILAK-IETLLGMEYMDEIIMESDGVVLN- 309 (547)
Q Consensus 236 ~lt~~D~~di~~~~~~g--~d~I~~sfV~--sa~di~~~r~~l~~~~~~i~Iiak-IEt~~av~nldeIl~~~DgImIa- 309 (547)
..++.|.+-++..++.| +|+|.+---. |...++.+ +++.+...+..||+- |-|+++.++| |..=+|+|.|+
T Consensus 103 G~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~~i-k~ir~~~p~~~viaGNV~T~e~a~~L--i~aGAD~ikVgi 179 (343)
T TIGR01305 103 GSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVEFV-KLVREAFPEHTIMAGNVVTGEMVEEL--ILSGADIVKVGI 179 (343)
T ss_pred ccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHH-HHHHhhCCCCeEEEecccCHHHHHHH--HHcCCCEEEEcc
Confidence 34778888899888875 9999875332 22223333 334434456788888 9999999977 33458999987
Q ss_pred -CCcccc-----cCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 310 -RIQLAV-----ATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 310 -rgDLg~-----e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+|=-.. -.|.+.+. +-..+.++++..++|+|.-..+ -.- .|++.|+..|||++|+.
T Consensus 180 GpGSicttR~~~Gvg~pqlt-Av~~~a~aa~~~~v~VIaDGGI------r~~--------gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 180 GPGSVCTTRTKTGVGYPQLS-AVIECADAAHGLKGHIISDGGC------TCP--------GDVAKAFGAGADFVMLG 241 (343)
T ss_pred cCCCcccCceeCCCCcCHHH-HHHHHHHHhccCCCeEEEcCCc------Cch--------hHHHHHHHcCCCEEEEC
Confidence 332211 11222222 3334666667778899974442 234 99999999999999997
No 45
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=96.54 E-value=0.012 Score=69.39 Aligned_cols=135 Identities=15% Similarity=0.108 Sum_probs=100.4
Q ss_pred CCCCCChhhHHHHHHHHH----cCCc---EEEEcccCChhhHHHHHHHH--------HhcCC--CceEEEEecCHHHHhh
Q psy6272 233 NLPVIADRDKHVVDLIVR----EAVD---IIIMSSVTGANSIREMRGML--------EDHVD--RVLILAKIETLLGMEY 295 (547)
Q Consensus 233 ~lp~lt~~D~~di~~~~~----~g~d---~I~~sfV~sa~di~~~r~~l--------~~~~~--~i~IiakIEt~~av~n 295 (547)
.-|.+.+-....|-.|.. .|.+ -|++|+|.+.++++.+|+.+ .+.|. ++.+=.+||++.|.--
T Consensus 674 ~~pei~~~QlrAI~~Aa~~~~~~G~~~~~~IMiPmV~~~~E~~~~r~~i~~~~~~~~~e~g~~~~~~vG~MIEvP~Aal~ 753 (879)
T PRK09279 674 TYPEIYEMQARAIFEAAVELKKEGIDVVPEIMIPLVGTVKELKLVKAIIDAVAEEVFAEKGVKLDYKVGTMIELPRAALT 753 (879)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEEEehHHHHHh
Confidence 335555556666655443 3643 49999999999999999865 22232 5789999999999999
Q ss_pred HHHHHhhcCEEEEcCCccccc------------C------------Ch-----HHHHHHHHHHHHHHHH--cCCcEEEEc
Q psy6272 296 MDEIIMESDGVVLNRIQLAVA------------T------------SV-----EVTFLAQKMIAARCNK--QGKPFLVVG 344 (547)
Q Consensus 296 ldeIl~~~DgImIargDLg~e------------~------------~~-----e~v~~~qk~ii~~c~~--~gKPvi~aT 344 (547)
.|+|++.+|.+-||-.||..- + |+ +-|-...+..+++|++ .|+||+++.
T Consensus 754 ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v~~~r~~~~~~~vgICG 833 (879)
T PRK09279 754 ADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAVERGRATRPDLKLGICG 833 (879)
T ss_pred HHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHHHHHHhcCCCCEEEECC
Confidence 999999999999999887531 1 11 2466677889999998 799999987
Q ss_pred CCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 345 DILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 345 q~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
++=-+|. -+.-.+..|.|-+-.|
T Consensus 834 E~ggdp~-------------~i~~l~~lGld~vS~s 856 (879)
T PRK09279 834 EHGGDPA-------------SIEFCHKVGLDYVSCS 856 (879)
T ss_pred CCccCHH-------------HHHHHHHCCCCEEEEC
Confidence 7532443 3445788899999998
No 46
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=96.45 E-value=0.069 Score=56.60 Aligned_cols=126 Identities=18% Similarity=0.128 Sum_probs=83.8
Q ss_pred CChhhHHHHHHHHH--cCCcEEEEccc--CChhhHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhhcCEEEEc--
Q psy6272 237 IADRDKHVVDLIVR--EAVDIIIMSSV--TGANSIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIMESDGVVLN-- 309 (547)
Q Consensus 237 lt~~D~~di~~~~~--~g~d~I~~sfV--~sa~di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~~DgImIa-- 309 (547)
.++.|.+-++..++ .|+|+|.+--- .|...++.++. +.+...++.||| -+-|+++.++| |..=+|++-||
T Consensus 105 ~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~-ik~~~P~~~vIaGNV~T~e~a~~L--i~aGAD~vKVGIG 181 (346)
T PRK05096 105 TSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAK-AREAWPDKTICAGNVVTGEMVEEL--ILSGADIVKVGIG 181 (346)
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHH-HHHhCCCCcEEEecccCHHHHHHH--HHcCCCEEEEccc
Confidence 46788888888888 49999987432 33333444433 443444555555 69999999987 44558998765
Q ss_pred CCccc-----ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 310 RIQLA-----VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 310 rgDLg-----~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+|=.. .-+|.+.+. +..+..+.|++.|+|+|--.. ---- .|++.|+..|||+|||.
T Consensus 182 pGSiCtTr~vtGvG~PQlt-AV~~~a~~a~~~gvpiIADGG------i~~s--------GDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 182 PGSVCTTRVKTGVGYPQLS-AVIECADAAHGLGGQIVSDGG------CTVP--------GDVAKAFGGGADFVMLG 242 (346)
T ss_pred CCccccCccccccChhHHH-HHHHHHHHHHHcCCCEEecCC------cccc--------cHHHHHHHcCCCEEEeC
Confidence 33322 222334443 344578888999999997433 1234 99999999999999998
No 47
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=96.23 E-value=0.021 Score=63.32 Aligned_cols=91 Identities=20% Similarity=0.207 Sum_probs=78.2
Q ss_pred CCcEEEEcccCChhhHHHHHHHHHhcC-----------------------CCceEEEEecCHHHHhhHHHHHhh-c----
Q psy6272 252 AVDIIIMSSVTGANSIREMRGMLEDHV-----------------------DRVLILAKIETLLGMEYMDEIIME-S---- 303 (547)
Q Consensus 252 g~d~I~~sfV~sa~di~~~r~~l~~~~-----------------------~~i~IiakIEt~~av~nldeIl~~-~---- 303 (547)
.+--|++||.++++|+.++..+..+.+ ..+.||.-+||.+++.|.++|+.. .
T Consensus 122 pIfEvIisMT~s~sdil~V~~l~~~a~~~~~~~~~~~~~~~~e~~~~~~~~~i~VIPLFEt~~dL~~a~~Il~~~l~~~~ 201 (506)
T TIGR02751 122 PIFEVILPMTTSADEILNVHQYYEKAVAGKQSIELYDEVTVKEWLGEFKPKKIRVIPLIEDKDSLLNADEIVKEYAEAHE 201 (506)
T ss_pred ceEEEEeeCCCCHHHHHHHHHHHHHhcccccccccccccchhcccccCCCCCcCeecCcCCHHHHHhHHHHHHHHHHhcC
Confidence 445799999999999999988776653 145799999999999999999988 1
Q ss_pred ---CEEEEcCCcccccCCh----HHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 304 ---DGVVLNRIQLAVATSV----EVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 304 ---DgImIargDLg~e~~~----e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
--||+||.|=+.+.|+ -.+..+|.++.+.|+++|.++..
T Consensus 202 ~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 202 PEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred cCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 2799999999999998 36778999999999999999764
No 48
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.22 E-value=0.088 Score=58.77 Aligned_cols=124 Identities=20% Similarity=0.256 Sum_probs=83.4
Q ss_pred ChhhHHHHHHHHHcCCcEEEEccc--CChhhHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhh-cCEEEEc--CC
Q psy6272 238 ADRDKHVVDLIVREAVDIIIMSSV--TGANSIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIME-SDGVVLN--RI 311 (547)
Q Consensus 238 t~~D~~di~~~~~~g~d~I~~sfV--~sa~di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~-~DgImIa--rg 311 (547)
++.+.+.+...++.|+|.|.+..- ++...++.++.+- +...++.|+| -+-|.+..+++ +++ +|+|.+| +|
T Consensus 239 ~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik-~~~~~~~v~aG~V~t~~~a~~~---~~aGad~I~vg~g~G 314 (495)
T PTZ00314 239 RPEDIERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLK-SNYPHVDIIAGNVVTADQAKNL---IDAGADGLRIGMGSG 314 (495)
T ss_pred CHHHHHHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHH-hhCCCceEEECCcCCHHHHHHH---HHcCCCEEEECCcCC
Confidence 456688888999999999998764 3443333333332 2234678888 57777666655 334 8999864 65
Q ss_pred c-----ccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 312 Q-----LAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 312 D-----Lg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
= .-...|.+.+. +-..+.+.|++.|.|+|....+. -- .|++.|+..|||++|+.
T Consensus 315 s~~~t~~~~~~g~p~~~-ai~~~~~~~~~~~v~vIadGGi~------~~--------~di~kAla~GA~~Vm~G 373 (495)
T PTZ00314 315 SICITQEVCAVGRPQAS-AVYHVARYARERGVPCIADGGIK------NS--------GDICKALALGADCVMLG 373 (495)
T ss_pred cccccchhccCCCChHH-HHHHHHHHHhhcCCeEEecCCCC------CH--------HHHHHHHHcCCCEEEEC
Confidence 2 12223444432 33457778999999999865533 23 89999999999999998
No 49
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.17 E-value=0.07 Score=57.41 Aligned_cols=120 Identities=17% Similarity=0.267 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHcCCcEEEEc-------ccCChhhHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhhcCEEEEcCC
Q psy6272 240 RDKHVVDLIVREAVDIIIMS-------SVTGANSIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIMESDGVVLNRI 311 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~s-------fV~sa~di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~~DgImIarg 311 (547)
...+..+.+++.|+|+|++. |+....+-..+.+++.+. ++.||+ .+-|.+....+-+ .=+|+||+|||
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~--~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~g 218 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGEL--DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPG 218 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHC--CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCC
Confidence 34556678889999999975 333333445555555543 577777 7777776665544 34899999985
Q ss_pred c-------ccccCChHHHHHHHHHHHHHHH----Hc---CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEE
Q psy6272 312 Q-------LAVATSVEVTFLAQKMIAARCN----KQ---GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVV 377 (547)
Q Consensus 312 D-------Lg~e~~~e~v~~~qk~ii~~c~----~~---gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~v 377 (547)
= |+..+|.. .+-..+..+++ +. .+|||.+..|- -- .|++.|+..|||++
T Consensus 219 g~~~~~~~lg~~~p~~---~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~------tg--------~di~kAlAlGAdaV 281 (369)
T TIGR01304 219 GANTTRLVLGIEVPMA---TAIADVAAARRDYLDETGGRYVHVIADGGIE------TS--------GDLVKAIACGADAV 281 (369)
T ss_pred CCcccccccCCCCCHH---HHHHHHHHHHHHHHHhcCCCCceEEEeCCCC------CH--------HHHHHHHHcCCCEe
Confidence 4 22222311 11111222222 22 38999877642 23 89999999999999
Q ss_pred eeC
Q psy6272 378 VLT 380 (547)
Q Consensus 378 mLs 380 (547)
|+.
T Consensus 282 ~iG 284 (369)
T TIGR01304 282 VLG 284 (369)
T ss_pred eeH
Confidence 998
No 50
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.82 E-value=0.15 Score=57.13 Aligned_cols=121 Identities=20% Similarity=0.185 Sum_probs=74.2
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChh--hHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhhcCEEEEcCC------
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGAN--SIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIMESDGVVLNRI------ 311 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~--di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~~DgImIarg------ 311 (547)
+.+.++..++.|+|.|.+.-..... .++.++.+-...+..+.|+| -|.|+++.+.+- -.=+|+|.||.|
T Consensus 243 ~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li--~aGAd~I~vg~g~Gs~c~ 320 (502)
T PRK07107 243 YAERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLA--EAGADFVKVGIGGGSICI 320 (502)
T ss_pred HHHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHH--HcCCCEEEECCCCCcCcc
Confidence 4667778889999999987211111 13333333333333466666 688999888773 234899998543
Q ss_pred ---cccccCChHHHHHHHHHHHHHHHH----cC--CcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 312 ---QLAVATSVEVTFLAQKMIAARCNK----QG--KPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 312 ---DLg~e~~~e~v~~~qk~ii~~c~~----~g--KPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
-+++ |.+.+..+. .+.+++++ .| +|+|.-..+ --- .|++.|+..|||++|+.
T Consensus 321 tr~~~~~--g~~~~~ai~-~~~~a~~~~~~~~g~~~~viadgGi------r~~--------gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 321 TREQKGI--GRGQATALI-EVAKARDEYFEETGVYIPICSDGGI------VYD--------YHMTLALAMGADFIMLG 381 (502)
T ss_pred cccccCC--CccHHHHHH-HHHHHHHHHHhhcCCcceEEEcCCC------Cch--------hHHHHHHHcCCCeeeeC
Confidence 3333 333332222 23444433 37 898874442 134 99999999999999998
No 51
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.78 E-value=0.2 Score=54.48 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=82.2
Q ss_pred ChhhHHHHHHHHHcCCcEEEE--cccCChhhHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhhcCEEEEcCCccc
Q psy6272 238 ADRDKHVVDLIVREAVDIIIM--SSVTGANSIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIMESDGVVLNRIQLA 314 (547)
Q Consensus 238 t~~D~~di~~~~~~g~d~I~~--sfV~sa~di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~~DgImIargDLg 314 (547)
++.+.+.++..++.|+|+|++ +.=. .+.+.++-+.+.+...+..+++ -|-|.+...++.+. =+|+|.+|-|-=+
T Consensus 151 ~~~~~~~v~~lv~aGvDvI~iD~a~g~-~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a--GaD~I~vG~g~Gs 227 (404)
T PRK06843 151 DIDTIERVEELVKAHVDILVIDSAHGH-STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV--GADCLKVGIGPGS 227 (404)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCC-ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc--CCCEEEECCCCCc
Confidence 456778899999999999994 3311 3445455555555544565655 78898888887552 4899998743211
Q ss_pred c-------cCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 315 V-------ATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 315 ~-------e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+ ..|.+.+..+ ..+-+.+++.+.|||....+- .- .|++.|+..|||+||+.
T Consensus 228 ~c~tr~~~g~g~p~ltai-~~v~~~~~~~~vpVIAdGGI~------~~--------~Di~KALalGA~aVmvG 285 (404)
T PRK06843 228 ICTTRIVAGVGVPQITAI-CDVYEVCKNTNICIIADGGIR------FS--------GDVVKAIAAGADSVMIG 285 (404)
T ss_pred CCcceeecCCCCChHHHH-HHHHHHHhhcCCeEEEeCCCC------CH--------HHHHHHHHcCCCEEEEc
Confidence 1 1233333222 223455667899999866532 23 89999999999999998
No 52
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=95.58 E-value=0.19 Score=56.22 Aligned_cols=125 Identities=16% Similarity=0.278 Sum_probs=81.6
Q ss_pred ChhhHHHHHHHHHcCCcEEEEcccC--ChhhHHHHHHHHHhcCCCceEEEE-ecCHHHHhhHHHHHhhcCEEEEc--CCc
Q psy6272 238 ADRDKHVVDLIVREAVDIIIMSSVT--GANSIREMRGMLEDHVDRVLILAK-IETLLGMEYMDEIIMESDGVVLN--RIQ 312 (547)
Q Consensus 238 t~~D~~di~~~~~~g~d~I~~sfV~--sa~di~~~r~~l~~~~~~i~Iiak-IEt~~av~nldeIl~~~DgImIa--rgD 312 (547)
.+.+.+.++..++.|+|+|++---. +...+ ...+.+.+...+..||++ |-|.+...++.+ .=+|+|.++ +|=
T Consensus 246 ~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~-~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~ 322 (505)
T PLN02274 246 RESDKERLEHLVKAGVDVVVLDSSQGDSIYQL-EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGS 322 (505)
T ss_pred CccHHHHHHHHHHcCCCEEEEeCCCCCcHHHH-HHHHHHHHhCCCCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCc
Confidence 4567888999999999999986432 22211 223334334456788775 999998888754 348999886 442
Q ss_pred cccc-----CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 313 LAVA-----TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 313 Lg~e-----~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
-... .|.+.+. +-..+-+.+++.++|||....+- -- .|++.|+..|||++|+.
T Consensus 323 ~~~t~~~~~~g~~~~~-~i~~~~~~~~~~~vpVIadGGI~------~~--------~di~kAla~GA~~V~vG 380 (505)
T PLN02274 323 ICTTQEVCAVGRGQAT-AVYKVASIAAQHGVPVIADGGIS------NS--------GHIVKALTLGASTVMMG 380 (505)
T ss_pred cccCccccccCCCccc-HHHHHHHHHHhcCCeEEEeCCCC------CH--------HHHHHHHHcCCCEEEEc
Confidence 1111 1222211 22225555677899999877632 23 89999999999999998
No 53
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=95.42 E-value=0.41 Score=52.81 Aligned_cols=125 Identities=20% Similarity=0.271 Sum_probs=84.3
Q ss_pred ChhhHHHHHHHHHcCCcEEEEcccC--ChhhHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhhcCEEEEc--CCc
Q psy6272 238 ADRDKHVVDLIVREAVDIIIMSSVT--GANSIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIMESDGVVLN--RIQ 312 (547)
Q Consensus 238 t~~D~~di~~~~~~g~d~I~~sfV~--sa~di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~~DgImIa--rgD 312 (547)
.+.+.+.....++.|+|+|.+-... +.. +.+..+.+.+...++.|++ -+-|.++..++-+ .=+|+|-+| +|=
T Consensus 222 ~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~-~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~--aGad~i~vg~g~G~ 298 (450)
T TIGR01302 222 REFDKERAEALVKAGVDVIVIDSSHGHSIY-VIDSIKEIKKTYPDLDIIAGNVATAEQAKALID--AGADGLRVGIGPGS 298 (450)
T ss_pred chhHHHHHHHHHHhCCCEEEEECCCCcHhH-HHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHH--hCCCEEEECCCCCc
Confidence 5677888889999999999986542 222 2222333333334677777 7888888877743 348999865 552
Q ss_pred cc-----ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 313 LA-----VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 313 Lg-----~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
-. ...|.+.+ .+...+.+.|++.++|+|....+- -- .|++.|+..|||++|+.
T Consensus 299 ~~~t~~~~~~g~p~~-~~i~~~~~~~~~~~vpviadGGi~------~~--------~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 299 ICTTRIVAGVGVPQI-TAVYDVAEYAAQSGIPVIADGGIR------YS--------GDIVKALAAGADAVMLG 356 (450)
T ss_pred CCccceecCCCccHH-HHHHHHHHHHhhcCCeEEEeCCCC------CH--------HHHHHHHHcCCCEEEEC
Confidence 11 12344444 344557788889999999866532 23 89999999999999998
No 54
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=95.36 E-value=0.084 Score=58.58 Aligned_cols=92 Identities=18% Similarity=0.140 Sum_probs=79.5
Q ss_pred cCCcEEEEcccCChhhHHHHHHHHHhcC--------------CCceEEEEecCHHHHhhHHHHHhhc----------CEE
Q psy6272 251 EAVDIIIMSSVTGANSIREMRGMLEDHV--------------DRVLILAKIETLLGMEYMDEIIMES----------DGV 306 (547)
Q Consensus 251 ~g~d~I~~sfV~sa~di~~~r~~l~~~~--------------~~i~IiakIEt~~av~nldeIl~~~----------DgI 306 (547)
..+-.+++||.++++|+.++..++.+.+ ..+.|+.-+||.+.+.|.++|+..- --|
T Consensus 120 ~ai~~~IisMt~s~sdll~V~~l~k~~g~~l~~~e~~~~~~~~~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qeV 199 (494)
T PRK13655 120 QPIFEVILPMTTSAEELIEVQRYYEKVVAGVKVKEWIGEFEPKEIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLRV 199 (494)
T ss_pred hhhceEEecCCCCHHHHHHHHHHHHHHhHhhccccccCCCCcCCcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeEE
Confidence 4567799999999999999988775554 2578999999999999999999761 389
Q ss_pred EEcCCcccccCCh----HHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 307 VLNRIQLAVATSV----EVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 307 mIargDLg~e~~~----e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
|+|+.|=+.+-|+ -.+..+|.++.+.|+++|+++..
T Consensus 200 mlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 200 FLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred EEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 9999999999998 46788999999999999999765
No 55
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.25 E-value=0.36 Score=53.73 Aligned_cols=129 Identities=18% Similarity=0.151 Sum_probs=88.8
Q ss_pred CCCChhhHHHHHHHHHcCCcEEEEcccCC-hhhHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhhcCEEEEc--C
Q psy6272 235 PVIADRDKHVVDLIVREAVDIIIMSSVTG-ANSIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIMESDGVVLN--R 310 (547)
Q Consensus 235 p~lt~~D~~di~~~~~~g~d~I~~sfV~s-a~di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~~DgImIa--r 310 (547)
-.+++++.+.+...++.|+|.|++---.. ...+.++.+.+.+...++.||| -|-|.++.+++.+ .=+|+|=|| +
T Consensus 222 v~~~~~~~~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~ 299 (479)
T PRK07807 222 VGINGDVAAKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGP 299 (479)
T ss_pred hccChhHHHHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHH--cCCCEEEECccC
Confidence 34466778888899999999988753322 2334444445555556789999 9999999999865 348988744 4
Q ss_pred Cccccc-----CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 311 IQLAVA-----TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 311 gDLg~e-----~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
|=.... .|.+.+. +-.++.+.|++.|+|||....+- + - .|++.|+..|||++|+.
T Consensus 300 gsictt~~~~~~~~p~~~-av~~~~~~~~~~~~~via~ggi~---~---~--------~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 300 GAMCTTRMMTGVGRPQFS-AVLECAAAARELGAHVWADGGVR---H---P--------RDVALALAAGASNVMIG 359 (479)
T ss_pred CcccccccccCCchhHHH-HHHHHHHHHHhcCCcEEecCCCC---C---H--------HHHHHHHHcCCCeeecc
Confidence 332221 2234443 33447777788899999865521 2 3 89999999999999998
No 56
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=94.75 E-value=0.43 Score=50.51 Aligned_cols=124 Identities=15% Similarity=0.205 Sum_probs=80.0
Q ss_pred CCChhhHHHHHHHHHcC--CcEEEEccc--CChhhHHHHHHHHHhcCCCceEEEE-ecCHHHHhhHHHHHhhcCEEEEc-
Q psy6272 236 VIADRDKHVVDLIVREA--VDIIIMSSV--TGANSIREMRGMLEDHVDRVLILAK-IETLLGMEYMDEIIMESDGVVLN- 309 (547)
Q Consensus 236 ~lt~~D~~di~~~~~~g--~d~I~~sfV--~sa~di~~~r~~l~~~~~~i~Iiak-IEt~~av~nldeIl~~~DgImIa- 309 (547)
..+++|.+.+...++.| +|+|.+-.- .|..-++.++. +.+.-..+.+|++ +-|.+..+.+.+ .=+|+|.++
T Consensus 90 G~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~-i~~~~p~~~vi~GnV~t~e~a~~l~~--aGad~I~V~~ 166 (321)
T TIGR01306 90 GVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVINMIKH-IKTHLPDSFVIAGNVGTPEAVRELEN--AGADATKVGI 166 (321)
T ss_pred CCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHH-HHHhCCCCEEEEecCCCHHHHHHHHH--cCcCEEEECC
Confidence 44788999999999988 799887542 22333333433 3333355678888 999988888743 347999987
Q ss_pred -CCc-------ccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 310 -RIQ-------LAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 310 -rgD-------Lg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+|= .|+..+...+ ..|.+.+....+|||.-..+- -- .|++.|+..|||++|+.
T Consensus 167 G~G~~~~tr~~~g~g~~~~~l----~ai~ev~~a~~~pVIadGGIr------~~--------~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 167 GPGKVCITKIKTGFGTGGWQL----AALRWCAKAARKPIIADGGIR------TH--------GDIAKSIRFGASMVMIG 227 (321)
T ss_pred CCCccccceeeeccCCCchHH----HHHHHHHHhcCCeEEEECCcC------cH--------HHHHHHHHcCCCEEeec
Confidence 232 1122221122 123333344578988765532 34 99999999999999998
No 57
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=94.66 E-value=0.21 Score=56.09 Aligned_cols=135 Identities=21% Similarity=0.223 Sum_probs=105.1
Q ss_pred CCcEEEEcccCChhhHHHHHHHHHhcC-----------CCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCccc-----c
Q psy6272 252 AVDIIIMSSVTGANSIREMRGMLEDHV-----------DRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLA-----V 315 (547)
Q Consensus 252 g~d~I~~sfV~sa~di~~~r~~l~~~~-----------~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg-----~ 315 (547)
|-=-|++|+|.+.+++++.|+++.+.. ..++|=+++|-+..+=.+|+++...|-|=||-.||. +
T Consensus 558 g~L~imLPMVt~v~E~~~Ar~li~ra~~~v~~~~~~~~~~~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAv 637 (756)
T COG3605 558 GNLRILLPMVTEVDEVDEARRLIERAVREVSEMGGYLPPKPRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAV 637 (756)
T ss_pred cCceeeeecccchHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHH
Confidence 344699999999999999999885432 245688899999999999999999999999999974 3
Q ss_pred cCCh-----------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcch
Q psy6272 316 ATSV-----------EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQ 384 (547)
Q Consensus 316 e~~~-----------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Et 384 (547)
+-+- +.+-.+-|+|...|.++|+||-++..|--+|-- ..--+..|.+.+-.| .+
T Consensus 638 DR~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCGEMAg~Pl~-------------A~~LigLGfrslSMn--~~ 702 (756)
T COG3605 638 DRNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCGEMAGDPLS-------------AMALIGLGFRSLSMN--PR 702 (756)
T ss_pred hcCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehhhhcCChHH-------------HHHHHhcCcCccccC--cc
Confidence 3332 345568899999999999999998876544432 234677899988887 77
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy6272 385 AHHRVDILKEILKKTES 401 (547)
Q Consensus 385 a~eaV~~m~~I~~~aE~ 401 (547)
++--|++|-.=+...+.
T Consensus 703 ~v~~VK~ml~~ld~~~~ 719 (756)
T COG3605 703 SVGPVKYLLRHLDLAEA 719 (756)
T ss_pred ccccHHHHHHhccHHHH
Confidence 77778877665555554
No 58
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=94.62 E-value=0.15 Score=59.71 Aligned_cols=117 Identities=17% Similarity=0.136 Sum_probs=92.4
Q ss_pred cEEEEcccCChhhHHHHHHHHH---hcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCccccc------------CC
Q psy6272 254 DIIIMSSVTGANSIREMRGMLE---DHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVA------------TS 318 (547)
Q Consensus 254 d~I~~sfV~sa~di~~~r~~l~---~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e------------~~ 318 (547)
-.+++||+++..+..+.. .+. ..+++.++..+||.+.++-..|||++.+|++=+|.+||..- ..
T Consensus 596 ~~~mip~~~~~~e~~~~~-~~~~~~~~~~~~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~ 674 (740)
T COG0574 596 VEIMIPFVRTEEEREKVI-ILEEGLKRGKNYKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDER 674 (740)
T ss_pred cEEEccccccHHHHHHHH-HHhhhhcccceEEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeeccccccccc
Confidence 358899999999988888 443 11233889999999999999999999999999999997631 22
Q ss_pred hHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchH
Q psy6272 319 VEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQA 385 (547)
Q Consensus 319 ~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta 385 (547)
.+.+-..-+..+..|+..++.+++++|.-++|.-|++ ++..|.|+|.+| .+..
T Consensus 675 ~~~v~~li~~a~~~~~~~~~~~~icG~~~~~p~~a~~-------------~~e~Gi~~Vs~n-p~~v 727 (740)
T COG0574 675 DPAVLKLIIIAIKAADSGGLLVGICGQAPSDPHGAIF-------------LVELGIDSVSLN-PDSV 727 (740)
T ss_pred cccHHHHHHHHHhcccccCcEEEEeccCCCCcHHHHH-------------HHHcCCCeEecC-chhh
Confidence 2567788888999999999999999995444333333 889999999987 4433
No 59
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=94.61 E-value=0.6 Score=48.97 Aligned_cols=114 Identities=14% Similarity=0.223 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATS 318 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~ 318 (547)
...+.++.++++|+++|.++|-...+.++++++ . .+++++.+=|.+-.+ ...+. +|+|.+--.+-+-..+
T Consensus 75 ~~~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~----~--g~~v~~~v~s~~~a~---~a~~~GaD~Ivv~g~eagGh~g 145 (307)
T TIGR03151 75 FVDELVDLVIEEKVPVVTTGAGNPGKYIPRLKE----N--GVKVIPVVASVALAK---RMEKAGADAVIAEGMESGGHIG 145 (307)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCcHHHHHHHHH----c--CCEEEEEcCCHHHHH---HHHHcCCCEEEEECcccCCCCC
Confidence 345567888999999999988654433444433 3 478888886654333 33333 7999873223333222
Q ss_pred hH-HHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 319 VE-VTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 319 ~e-~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.. .+..+ +++. +..++|||.+..+- .- .|++.+...|+|+|++.
T Consensus 146 ~~~~~~ll-~~v~---~~~~iPviaaGGI~------~~--------~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 146 ELTTMALV-PQVV---DAVSIPVIAAGGIA------DG--------RGMAAAFALGAEAVQMG 190 (307)
T ss_pred CCcHHHHH-HHHH---HHhCCCEEEECCCC------CH--------HHHHHHHHcCCCEeecc
Confidence 21 22222 2232 34479999988743 23 78888999999999998
No 60
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.36 E-value=0.91 Score=47.96 Aligned_cols=146 Identities=17% Similarity=0.212 Sum_probs=84.9
Q ss_pred HHHHHHHHHcCCcEEEEcc----cCC---hhhH-HHHHHHHHhc--CCCceEEEEecCHHHHhhHHHHHhh-----cCEE
Q psy6272 242 KHVVDLIVREAVDIIIMSS----VTG---ANSI-REMRGMLEDH--VDRVLILAKIETLLGMEYMDEIIME-----SDGV 306 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf----V~s---a~di-~~~r~~l~~~--~~~i~IiakIEt~~av~nldeIl~~-----~DgI 306 (547)
.+..+.+.+.|+|+|-+.+ ... ..+. ..+.+.+.+. .-++.|++|+ ++ .+.++.++++. +|||
T Consensus 117 ~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl-~p-~~~~~~~~a~~l~~~G~dgI 194 (334)
T PRK07565 117 VDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKL-SP-YFSNLANMAKRLDAAGADGL 194 (334)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEe-CC-CchhHHHHHHHHHHcCCCeE
Confidence 3444556677999998843 111 1111 1233333221 1358899997 33 33345555543 5887
Q ss_pred EEcCCcccccCCh--------------HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHh
Q psy6272 307 VLNRIQLAVATSV--------------EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQD 372 (547)
Q Consensus 307 mIargDLg~e~~~--------------e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~ 372 (547)
.+.-.=.+..+.. ...+.+.+.+-...+..+.|+|-...+- -. .|+..++..
T Consensus 195 ~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~------s~--------~Da~e~l~a 260 (334)
T PRK07565 195 VLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVH------DA--------EDVIKMLLA 260 (334)
T ss_pred EEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCC------CH--------HHHHHHHHc
Confidence 6632212222211 1234445544444455589998877643 24 889999999
Q ss_pred CccEEeeCCcchHHHHHHHHHHHHHHhhhhhh
Q psy6272 373 GADVVVLTQSEQAHHRVDILKEILKKTESVLW 404 (547)
Q Consensus 373 g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~ 404 (547)
|||+|++. ..-..+.-+.+.+|+++.+..+.
T Consensus 261 GA~~V~v~-t~~~~~g~~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 261 GADVVMIA-SALLRHGPDYIGTILRGLEDWME 291 (334)
T ss_pred CCCceeee-hHHhhhCcHHHHHHHHHHHHHHH
Confidence 99999998 44444667788888888887654
No 61
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.34 E-value=0.81 Score=45.24 Aligned_cols=116 Identities=11% Similarity=0.183 Sum_probs=69.7
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATS 318 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~ 318 (547)
...+.++.+.+.|+|+|.++.-.+.+.++.+++ ..+.++..+.+.+- +..+.+. +|+|.+....-+-..+
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~~~~~~~~~~~~------~~i~~i~~v~~~~~---~~~~~~~gad~i~~~~~~~~G~~~ 138 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFGPPAEVVERLKA------AGIKVIPTVTSVEE---ARKAEAAGADALVAQGAEAGGHRG 138 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCCCCHHHHHHHHH------cCCEEEEeCCCHHH---HHHHHHcCCCEEEEeCcCCCCCCC
Confidence 445678888999999999997755444443332 25778888876533 3344433 6888763322111111
Q ss_pred hHHHHHHHHHHHHHHHH-cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 319 VEVTFLAQKMIAARCNK-QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 319 ~e~v~~~qk~ii~~c~~-~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
... ......+..+++ .++|++.+..+= .. .|+..++..|+|+|+++
T Consensus 139 ~~~--~~~~~~i~~i~~~~~~Pvi~~GGI~------~~--------~~v~~~l~~GadgV~vg 185 (236)
T cd04730 139 TFD--IGTFALVPEVRDAVDIPVIAAGGIA------DG--------RGIAAALALGADGVQMG 185 (236)
T ss_pred ccc--cCHHHHHHHHHHHhCCCEEEECCCC------CH--------HHHHHHHHcCCcEEEEc
Confidence 100 011223333333 379999876632 23 77888889999999998
No 62
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=94.14 E-value=1.3 Score=46.96 Aligned_cols=124 Identities=18% Similarity=0.256 Sum_probs=78.2
Q ss_pred ChhhHHHHHHHHHcCC--cEEEEcccC-ChhhHHHHHHHHHhcCCCceEEEE-ecCHHHHhhHHHHHhhcCEEEEcCCcc
Q psy6272 238 ADRDKHVVDLIVREAV--DIIIMSSVT-GANSIREMRGMLEDHVDRVLILAK-IETLLGMEYMDEIIMESDGVVLNRIQL 313 (547)
Q Consensus 238 t~~D~~di~~~~~~g~--d~I~~sfV~-sa~di~~~r~~l~~~~~~i~Iiak-IEt~~av~nldeIl~~~DgImIargDL 313 (547)
++++.+-+...++.|+ |+|.+---. ..+.+.++-+.+.+...++.||++ +-|.+...++.+ .=+|++.+|=|-=
T Consensus 95 ~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~--aGad~i~vg~~~G 172 (326)
T PRK05458 95 KDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN--AGADATKVGIGPG 172 (326)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH--cCcCEEEECCCCC
Confidence 5677888888899855 999983222 123444444455555566889997 999998887754 2389998772211
Q ss_pred cc-------cCChHHHHHHHHHHHHHH-HHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 314 AV-------ATSVEVTFLAQKMIAARC-NKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 314 g~-------e~~~e~v~~~qk~ii~~c-~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+. -.+.+.+ |-..+..| +...+|+|....+- -- .|++.++..|||++|+.
T Consensus 173 ~~~~t~~~~g~~~~~w---~l~ai~~~~~~~~ipVIAdGGI~------~~--------~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 173 KVCITKIKTGFGTGGW---QLAALRWCAKAARKPIIADGGIR------TH--------GDIAKSIRFGATMVMIG 230 (326)
T ss_pred cccccccccCCCCCcc---HHHHHHHHHHHcCCCEEEeCCCC------CH--------HHHHHHHHhCCCEEEec
Confidence 11 1122211 21112222 33579988766632 23 89999999999999998
No 63
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=94.14 E-value=0.29 Score=58.34 Aligned_cols=92 Identities=14% Similarity=0.188 Sum_probs=80.6
Q ss_pred CCcEEEEcccCChhhHHHHHHHHHhcC--------CCceEEEEecCHHHHhhHHHHHhhc----------------CEEE
Q psy6272 252 AVDIIIMSSVTGANSIREMRGMLEDHV--------DRVLILAKIETLLGMEYMDEIIMES----------------DGVV 307 (547)
Q Consensus 252 g~d~I~~sfV~sa~di~~~r~~l~~~~--------~~i~IiakIEt~~av~nldeIl~~~----------------DgIm 307 (547)
.+..+++||.++++|+-++.-++.+.| ..+.|+.-+||.+.++|.++|+..- --||
T Consensus 486 ~i~~yIiSmt~~~sdvL~v~~l~k~~gl~~~~~~~~~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeVM 565 (911)
T PRK00009 486 AIGAYIISMAETVSDVLEVLLLLKEAGLLDPAAARAPLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEVM 565 (911)
T ss_pred hhceEeecCCCCHHHHHHHHHHHHHcCCCccCCCCCCcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEEE
Confidence 566789999999999999998887754 2578999999999999999999871 1799
Q ss_pred EcCCcccccCCh----HHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 308 LNRIQLAVATSV----EVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 308 IargDLg~e~~~----e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
+|..|=+.+-|+ -.+..+|+++.+.|+++|+++...
T Consensus 566 lGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~l~~F 605 (911)
T PRK00009 566 LGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVRLTLF 605 (911)
T ss_pred eecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 999999999997 478889999999999999998763
No 64
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=94.02 E-value=0.45 Score=57.18 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=88.6
Q ss_pred CCCCCChhhHHHHHHHHHcCCc---EEEEcccCChhhHHHHHHHHHhcC-----CCceEEEEecCHHHHhhHHHHHhh--
Q psy6272 233 NLPVIADRDKHVVDLIVREAVD---IIIMSSVTGANSIREMRGMLEDHV-----DRVLILAKIETLLGMEYMDEIIME-- 302 (547)
Q Consensus 233 ~lp~lt~~D~~di~~~~~~g~d---~I~~sfV~sa~di~~~r~~l~~~~-----~~i~IiakIEt~~av~nldeIl~~-- 302 (547)
+++.-+.+-.+-+..+.+.|.+ ..++|+.+++.|+-++.-+..+.| ..+.|+.-.||.+.++|.++|+..
T Consensus 523 ~~s~~~~evl~~f~~ia~~~~~alg~yIISmt~~~sdiL~V~~l~k~~g~~~~~~~l~VvPLFETi~dL~~a~~il~~ll 602 (974)
T PTZ00398 523 NWPSEVNEVLDTFKVCSELENEALGAYIISMCRNPSDILLVHVFQKEILKSGASKRQRVVPLLETIESLNSSSKTLEELF 602 (974)
T ss_pred CCCHHHHHHHHHHHHHHHccccccceeeeCCCCCHHHHHHHHHHHHHhCCcCCCCCcCeeCCcCCHHHHHhHHHHHHHHH
Confidence 3444444445555555555444 578999999999999988887643 357899999999999999999977
Q ss_pred c---------------CEEEEcCCcccccCCh----HHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 303 S---------------DGVVLNRIQLAVATSV----EVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 303 ~---------------DgImIargDLg~e~~~----e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
+ --||+|+.|=+.+-|+ -.+..+|.++.+.|+++|+.+...
T Consensus 603 ~~p~Yr~~l~~~~~~~qeVMlGYSDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~gV~l~~F 662 (974)
T PTZ00398 603 SNPWYLKHLKTVDNGIQEIMIGYSDSGKDGGRLTSAWELYKAQERLSNIARQYGVEIRFF 662 (974)
T ss_pred cCHHHHHHHhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHHHHHHHHcCCcEEEe
Confidence 1 2799999999999998 478889999999999999998763
No 65
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.88 E-value=1.9 Score=44.48 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=69.4
Q ss_pred HHHHHHHHHcCCcEEEEcc------------cCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-----cC
Q psy6272 242 KHVVDLIVREAVDIIIMSS------------VTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-----SD 304 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf------------V~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-----~D 304 (547)
....+.+.+.|+|+|-+.| -.+++.+.++-+.+.+.- ++.|++||= + ..+++.+|++. +|
T Consensus 105 ~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~-~-~~~~~~~~a~~~~~~G~d 181 (296)
T cd04740 105 VEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLT-P-NVTDIVEIARAAEEAGAD 181 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeC-C-CchhHHHHHHHHHHcCCC
Confidence 3344566678999997743 344555555555554332 678999983 2 22345555543 48
Q ss_pred EEEEc-----CC-ccc-----------ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH
Q psy6272 305 GVVLN-----RI-QLA-----------VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN 367 (547)
Q Consensus 305 gImIa-----rg-DLg-----------~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~ 367 (547)
+|.+- +. |+. .--|....+...+.+-...+..++|+|....+- .. .|+.
T Consensus 182 ~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~------~~--------~da~ 247 (296)
T cd04740 182 GLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIA------SG--------EDAL 247 (296)
T ss_pred EEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCC------CH--------HHHH
Confidence 87651 11 220 001111112223333333344589999877643 23 7888
Q ss_pred HHHHhCccEEeeC
Q psy6272 368 SIVQDGADVVVLT 380 (547)
Q Consensus 368 nav~~g~D~vmLs 380 (547)
.++..|||+|++.
T Consensus 248 ~~l~~GAd~V~ig 260 (296)
T cd04740 248 EFLMAGASAVQVG 260 (296)
T ss_pred HHHHcCCCEEEEc
Confidence 8999999999998
No 66
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.84 E-value=1.4 Score=46.93 Aligned_cols=148 Identities=20% Similarity=0.193 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHcCCcEEEEccc----------CChhhHHHHHHHHHhcCC----CceEEEEecCHHHHhhHHHHHhh---
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSV----------TGANSIREMRGMLEDHVD----RVLILAKIETLLGMEYMDEIIME--- 302 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV----------~sa~di~~~r~~l~~~~~----~i~IiakIEt~~av~nldeIl~~--- 302 (547)
.|...+..-+..++|++-+.|- +..+.+.++-+.+.+.-. ++.|++||----..+++.++++.
T Consensus 157 ~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~ 236 (344)
T PRK05286 157 DDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALE 236 (344)
T ss_pred HHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 3433333333346999887651 123344444333332212 48999999733222345555554
Q ss_pred --cCEEEEcCCc-----ccc-----cC----ChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchh
Q psy6272 303 --SDGVVLNRIQ-----LAV-----AT----SVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMN 364 (547)
Q Consensus 303 --~DgImIargD-----Lg~-----e~----~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~ 364 (547)
+|||.+.=+- +.- .. |...-+...+.+-...+.. +.|++..+.+. .. .
T Consensus 237 ~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~------s~--------e 302 (344)
T PRK05286 237 HGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGID------SA--------E 302 (344)
T ss_pred hCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCC------CH--------H
Confidence 5888775321 100 00 1222333444444444444 58999888754 24 8
Q ss_pred hHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhh
Q psy6272 365 DVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESV 402 (547)
Q Consensus 365 Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~ 402 (547)
|+..++..|||+|++. .....+--.+..+|+++.++.
T Consensus 303 da~e~l~aGAd~V~v~-~~~~~~gP~~~~~i~~~L~~~ 339 (344)
T PRK05286 303 DAYEKIRAGASLVQIY-SGLIYEGPGLVKEIVRGLARL 339 (344)
T ss_pred HHHHHHHcCCCHHHHH-HHHHHhCchHHHHHHHHHHHH
Confidence 8888999999999998 433334455556666666654
No 67
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.82 E-value=1.2 Score=44.92 Aligned_cols=117 Identities=10% Similarity=0.100 Sum_probs=80.3
Q ss_pred HHHHHHHHHcCCcEEEEcc--cCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEE---EcCCccccc
Q psy6272 242 KHVVDLIVREAVDIIIMSS--VTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVV---LNRIQLAVA 316 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf--V~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgIm---IargDLg~e 316 (547)
.+.++.+.+.|+|+|.++- +++.++..++.+.+.+.|-+..+...=+| -.+.+..+++.+|+++ +.+|..+ .
T Consensus 91 ~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T--~~e~l~~~~~~~~~~l~msv~~~~g~-~ 167 (244)
T PRK13125 91 DNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKF--PDLLIHRLSKLSPLFIYYGLRPATGV-P 167 (244)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCEEEEEeCCCCCC-C
Confidence 3448888999999999985 56678888999999888877777766655 3577888999999886 3445532 2
Q ss_pred CChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 317 TSVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 317 ~~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+..-...-++..++. .+|+.+-..+ -+ - .++......|+|+++..
T Consensus 168 -----~~~~~~~~i~~lr~~~~~~~i~v~gGI---~~---~--------e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 168 -----LPVSVERNIKRVRNLVGNKYLVVGFGL---DS---P--------EDARDALSAGADGVVVG 214 (244)
T ss_pred -----chHHHHHHHHHHHHhcCCCCEEEeCCc---CC---H--------HHHHHHHHcCCCEEEEC
Confidence 222223344444544 4677664432 11 2 66777788999999986
No 68
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=93.65 E-value=1.3 Score=49.25 Aligned_cols=123 Identities=18% Similarity=0.206 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHcCCcEEEEc--ccCChhhHHHHHHHHHhcCCCce-EEEEecCHHHHhhHHHHHhhcCEEEEcCCccc--
Q psy6272 240 RDKHVVDLIVREAVDIIIMS--SVTGANSIREMRGMLEDHVDRVL-ILAKIETLLGMEYMDEIIMESDGVVLNRIQLA-- 314 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~s--fV~sa~di~~~r~~l~~~~~~i~-IiakIEt~~av~nldeIl~~~DgImIargDLg-- 314 (547)
.+.+.++..++.|+|.|.+- +-++ ..+....+.+.+...++. |+.-+-|.+...++-+ .=+|+|-+|=|--+
T Consensus 228 ~~~e~a~~L~~agvdvivvD~a~g~~-~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~--aGad~i~vg~g~gs~~ 304 (486)
T PRK05567 228 DNEERAEALVEAGVDVLVVDTAHGHS-EGVLDRVREIKAKYPDVQIIAGNVATAEAARALIE--AGADAVKVGIGPGSIC 304 (486)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCcc-hhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHH--cCCCEEEECCCCCccc
Confidence 44777888899999987653 2222 334444444544443444 5577888888887754 24799977533211
Q ss_pred -----ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 315 -----VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 315 -----~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
...|.+.+. +-.++.+.|++.|+|+|.-..+- -- .|++.|+..|||++|+.
T Consensus 305 ~~r~~~~~g~p~~~-~~~~~~~~~~~~~~~viadGGi~------~~--------~di~kAla~GA~~v~~G 360 (486)
T PRK05567 305 TTRIVAGVGVPQIT-AIADAAEAAKKYGIPVIADGGIR------YS--------GDIAKALAAGASAVMLG 360 (486)
T ss_pred cceeecCCCcCHHH-HHHHHHHHhccCCCeEEEcCCCC------CH--------HHHHHHHHhCCCEEEEC
Confidence 122233332 33335667777899998755532 23 89999999999999998
No 69
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=93.59 E-value=1.3 Score=43.77 Aligned_cols=119 Identities=19% Similarity=0.160 Sum_probs=69.1
Q ss_pred hHHHHHHHHHcCCcEEEEc--ccCCh--hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccc
Q psy6272 241 DKHVVDLIVREAVDIIIMS--SVTGA--NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAV 315 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~s--fV~sa--~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~ 315 (547)
+.+.++.+.+.|+|+|.+- ...++ +++.++.+.+.+. ..+.+++..-|.+-+ ...... +|.+.+..+++..
T Consensus 77 ~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~---~~a~~~G~d~i~~~~~g~t~ 152 (221)
T PRK01130 77 TLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLEEG---LAAQKLGFDFIGTTLSGYTE 152 (221)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHH---HHHHHcCCCEEEcCCceeec
Confidence 4566899999999977653 33233 6777777777654 566777655443322 222222 5888775544422
Q ss_pred cC--ChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 316 AT--SVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 316 e~--~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.- ........-+++. ...++|++.+..+- .. .|+..+...|+|++++.
T Consensus 153 ~~~~~~~~~~~~i~~i~---~~~~iPvia~GGI~------t~--------~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 153 ETKKPEEPDFALLKELL---KAVGCPVIAEGRIN------TP--------EQAKKALELGAHAVVVG 202 (221)
T ss_pred CCCCCCCcCHHHHHHHH---HhCCCCEEEECCCC------CH--------HHHHHHHHCCCCEEEEc
Confidence 11 0111111112222 22389999876632 12 67778888999999997
No 70
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=93.21 E-value=1.2 Score=46.46 Aligned_cols=124 Identities=18% Similarity=0.260 Sum_probs=74.1
Q ss_pred hhHHHH-HHHHHcCCcEEEE----ccc-----------CChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-
Q psy6272 240 RDKHVV-DLIVREAVDIIIM----SSV-----------TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME- 302 (547)
Q Consensus 240 ~D~~di-~~~~~~g~d~I~~----sfV-----------~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~- 302 (547)
.|.... +.+.+.|+|+|-+ |.. ++++.+.++.+.+.+. -++.+++||- ..+.++.++++.
T Consensus 113 ~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~-~~~Pv~vKl~--~~~~~~~~~a~~~ 189 (299)
T cd02940 113 EDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA-VKIPVIAKLT--PNITDIREIARAA 189 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh-cCCCeEEECC--CCchhHHHHHHHH
Confidence 444443 4444568998876 333 3344455555555432 3578999994 244566677664
Q ss_pred ----cCEEEEc-----CCcc-----------------cccCChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCccc
Q psy6272 303 ----SDGVVLN-----RIQL-----------------AVATSVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEE 354 (547)
Q Consensus 303 ----~DgImIa-----rgDL-----------------g~e~~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE 354 (547)
+|||.+. |-++ +.=-|....+.+.+.+-...+.. ..|+|-.+.+. .
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~~~~~ipIig~GGI~------~ 263 (299)
T cd02940 190 KEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARAPEPGLPISGIGGIE------S 263 (299)
T ss_pred HHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHhcCCCCcEEEECCCC------C
Confidence 4888741 1111 11111223344555555555556 68999877743 2
Q ss_pred ccccCccchhhHHHHHHhCccEEeeC
Q psy6272 355 YSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 355 ~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
. .|+..++..|||+||+.
T Consensus 264 ~--------~da~~~l~aGA~~V~i~ 281 (299)
T cd02940 264 W--------EDAAEFLLLGASVVQVC 281 (299)
T ss_pred H--------HHHHHHHHcCCChheEc
Confidence 4 89999999999999997
No 71
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=93.13 E-value=1.4 Score=46.83 Aligned_cols=207 Identities=17% Similarity=0.262 Sum_probs=122.8
Q ss_pred hhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHH----------------HHhcCCCceEEEEecCHHHHhhHHHHHhh
Q psy6272 239 DRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGM----------------LEDHVDRVLILAKIETLLGMEYMDEIIME 302 (547)
Q Consensus 239 ~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~----------------l~~~~~~i~IiakIEt~~av~nldeIl~~ 302 (547)
+.+++.+..|++.|+|.|+++- +++..++++ +...+.....+.+|.+++..+...+....
T Consensus 13 ~~~k~~vt~AlEsGv~~vvv~~----~~~~~v~~lg~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~e~~a~~~~~~ 88 (344)
T PRK02290 13 EERKEVVTTALESGVDGVVVDE----EDVERVRELGRIKVAADDPDADAVVISGSAGEDGAYVEIRDKEDEEFAAELAKE 88 (344)
T ss_pred hhHHHHHHHHHHcCCCEEEECH----HHhHHHHhhCCeeEEEEcCCcchhhhcccCCceEEEEEECCHHHHHHHHHhhcc
Confidence 7889999999999999998864 555555442 12234567788899999999999999998
Q ss_pred cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCc
Q psy6272 303 SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQS 382 (547)
Q Consensus 303 ~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~ 382 (547)
+|-++|--.|.. -+|+|.+ |++..+..+ ++..-. ++. |. .=.......|+|+|+|. .
T Consensus 89 ~~~viv~~~dW~-iIPlEnl-------IA~~~~~~~-l~a~v~---~~~--eA--------~~a~~~LE~G~dGVvl~-~ 145 (344)
T PRK02290 89 VDYVIVEGRDWT-IIPLENL-------IADLGQSGK-IIAGVA---DAE--EA--------KLALEILEKGVDGVLLD-P 145 (344)
T ss_pred CCEEEEECCCCc-EecHHHH-------HhhhcCCce-EEEEeC---CHH--HH--------HHHHHHhccCCCeEEEC-C
Confidence 898888655554 3777765 333333333 333222 333 33 33568899999999999 6
Q ss_pred chHHHHHHHHHHHHHH-hhhhhhh---------HHHHHHhhhcCCCCCChhh-----------HHHHHHH-------HHH
Q psy6272 383 EQAHHRVDILKEILKK-TESVLWE---------KQVFEDLCALACPPLDPAH-----------SIVIACV-------NAA 434 (547)
Q Consensus 383 Eta~eaV~~m~~I~~~-aE~~~~~---------~~~f~~~~~~~~~~~~~~~-----------~ia~aav-------~~a 434 (547)
+...+ ++-+...+.+ .|..... -.+=+.-+--+.....+-| .+..|-. ..-
T Consensus 146 ~d~~e-i~~~~~~~~~~~~~l~L~~a~Vt~V~~vG~GdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pYva~RP 224 (344)
T PRK02290 146 DDPNE-IKAIVALIEEAREKLELVPATVTRVEPVGMGDRVCVDTCSLMEEGEGMLVGSSSRGMFLVHAETEENPYVASRP 224 (344)
T ss_pred CCHHH-HHHHHHHHhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCceEEEcccCCcEEEEecccccCCCccCCC
Confidence 65553 3333333333 1211000 0000000000000000000 0111111 123
Q ss_pred HhcCCcEEEEEcCC-chHHHHHHhcCCCCCEEEEeCchhc
Q psy6272 435 LKCQAVAIIVITCS-GYSAKLVSKYRPQCPILAVSSLGYV 473 (547)
Q Consensus 435 ~~~~a~aIvv~T~s-G~tA~~isk~RP~~pIiavt~~~~~ 473 (547)
++.||.+.=.|+.. |..+++||-.|..-.|++|-.+.++
T Consensus 225 FRVNAGaVhaYv~~pgg~T~YLsEL~sG~eVlvVd~~G~t 264 (344)
T PRK02290 225 FRVNAGAVHAYVRVPGDKTRYLSELRSGDEVLVVDADGNT 264 (344)
T ss_pred eeEecCcceeEEEcCCCcchhhHhhcCCCEEEEEeCCCCE
Confidence 46788877777766 6666899999999999999987654
No 72
>PRK15452 putative protease; Provisional
Probab=93.12 E-value=1.7 Score=48.05 Aligned_cols=124 Identities=8% Similarity=0.039 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHcCCcEEEEccc----------CChhhHHHHHHHHHhcCCCceEEEE-ecCHHHHhhHHHHH----hh-c
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSV----------TGANSIREMRGMLEDHVDRVLILAK-IETLLGMEYMDEII----ME-S 303 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV----------~sa~di~~~r~~l~~~~~~i~Iiak-IEt~~av~nldeIl----~~-~ 303 (547)
.+.+.++.|++.|||.|.+..- -+.++++++.++..+.|.++.+..- |=..+-++.+.+.+ .. .
T Consensus 11 g~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~~gv 90 (443)
T PRK15452 11 GTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIAMKP 90 (443)
T ss_pred CCHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHhCCC
Confidence 6788899999999999999321 1447888888888777765443211 22223344444444 33 6
Q ss_pred CEEEEcCCcccccCChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCC
Q psy6272 304 DGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQ 381 (547)
Q Consensus 304 DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk 381 (547)
|||+|+ |+| ++..+++. +.|+...||+- .-+ . ..+--+-..|++.+.||
T Consensus 91 DgvIV~--d~G--------------~l~~~ke~~p~l~ih~stqln-i~N-~----------~a~~f~~~lG~~rvvLS- 141 (443)
T PRK15452 91 DALIMS--DPG--------------LIMMVREHFPEMPIHLSVQAN-AVN-W----------ATVKFWQQMGLTRVILS- 141 (443)
T ss_pred CEEEEc--CHH--------------HHHHHHHhCCCCeEEEEeccc-CCC-H----------HHHHHHHHCCCcEEEEC-
Confidence 999997 555 33444443 78999999964 111 1 12223445699999999
Q ss_pred cchHHHHHHHH
Q psy6272 382 SEQAHHRVDIL 392 (547)
Q Consensus 382 ~Eta~eaV~~m 392 (547)
-|-..+=++.|
T Consensus 142 rELsl~EI~~i 152 (443)
T PRK15452 142 RELSLEEIEEI 152 (443)
T ss_pred CcCCHHHHHHH
Confidence 88766444444
No 73
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=92.86 E-value=1.5 Score=47.68 Aligned_cols=147 Identities=15% Similarity=0.195 Sum_probs=88.8
Q ss_pred hhHHHH-HHHHHcCCcEEEEcc-----c----------CChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-
Q psy6272 240 RDKHVV-DLIVREAVDIIIMSS-----V----------TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME- 302 (547)
Q Consensus 240 ~D~~di-~~~~~~g~d~I~~sf-----V----------~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~- 302 (547)
.+..+. +.+-+.|+|+|-+.+ + ++++.+.++.+.+.+. -++.|++||= + .+.++.+|++.
T Consensus 113 ~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl~-p-~~~~~~~~a~~~ 189 (420)
T PRK08318 113 EEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKLT-P-NITDIREPARAA 189 (420)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEcC-C-CcccHHHHHHHH
Confidence 444444 344557899987642 2 2334444444444432 3589999994 3 45567777664
Q ss_pred ----cCEEEE-----cCCc-----------c------cccCChHHHHHHHHHHHHHHHHc---CCcEEEEcCCCCCCCcc
Q psy6272 303 ----SDGVVL-----NRIQ-----------L------AVATSVEVTFLAQKMIAARCNKQ---GKPFLVVGDILPDHNVE 353 (547)
Q Consensus 303 ----~DgImI-----argD-----------L------g~e~~~e~v~~~qk~ii~~c~~~---gKPvi~aTq~Le~Ptra 353 (547)
+|||.+ +|-. | |.=-|....+.+.+.|-...++. +.|+|-.+.+.
T Consensus 190 ~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~GGI~------ 263 (420)
T PRK08318 190 KRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGIGGIE------ 263 (420)
T ss_pred HHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEeecCcC------
Confidence 588882 2211 1 11113344555666555555544 67998877644
Q ss_pred cccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhh
Q psy6272 354 EYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLW 404 (547)
Q Consensus 354 E~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~ 404 (547)
.. .|+..+++.|||+||+. .-...+--..+.+|.++.+..+.
T Consensus 264 s~--------~da~e~i~aGA~~Vqi~-ta~~~~gp~ii~~I~~~L~~~l~ 305 (420)
T PRK08318 264 TW--------RDAAEFILLGAGTVQVC-TAAMQYGFRIVEDMISGLSHYMD 305 (420)
T ss_pred CH--------HHHHHHHHhCCChheee-eeeccCCchhHHHHHHHHHHHHH
Confidence 24 89999999999999998 44444556677777777766543
No 74
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.82 E-value=1.9 Score=48.05 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=83.7
Q ss_pred CCCChhhHHHHHHHHHcCCcEEEEc--ccCChhhHHHHHHHHHhcCCCceEEEE-ecCHHHHhhHHHHHhhcCEEEEc--
Q psy6272 235 PVIADRDKHVVDLIVREAVDIIIMS--SVTGANSIREMRGMLEDHVDRVLILAK-IETLLGMEYMDEIIMESDGVVLN-- 309 (547)
Q Consensus 235 p~lt~~D~~di~~~~~~g~d~I~~s--fV~sa~di~~~r~~l~~~~~~i~Iiak-IEt~~av~nldeIl~~~DgImIa-- 309 (547)
-.+.+.+.+-+...++.|+|.|++- .-++ +.+..+.+.+.+...++.||+- +-|.++..+|-+ .=+|+|=||
T Consensus 220 v~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~-~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~--~G~d~i~vg~g 296 (475)
T TIGR01303 220 VGINGDVGGKAKALLDAGVDVLVIDTAHGHQ-VKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLE--AGANIIKVGVG 296 (475)
T ss_pred eeeCccHHHHHHHHHHhCCCEEEEeCCCCCc-HHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHH--hCCCEEEECCc
Confidence 3445677788889999999998863 3233 3344444455554457888887 888888888754 237887644
Q ss_pred -------CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 310 -------RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 310 -------rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
|+--++ |.+.+ .+--...+.++++|+|+|.-..+ . .- .|++.|+..|||++|+.
T Consensus 297 ~Gs~~ttr~~~~~--g~~~~-~a~~~~~~~~~~~~~~viadGgi---~---~~--------~di~kala~GA~~vm~g 357 (475)
T TIGR01303 297 PGAMCTTRMMTGV--GRPQF-SAVLECAAEARKLGGHVWADGGV---R---HP--------RDVALALAAGASNVMVG 357 (475)
T ss_pred CCccccCccccCC--CCchH-HHHHHHHHHHHHcCCcEEEeCCC---C---CH--------HHHHHHHHcCCCEEeec
Confidence 322222 22322 23334666678889998875442 1 23 89999999999999998
No 75
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.89 Score=48.64 Aligned_cols=128 Identities=15% Similarity=0.172 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHcCCcEEEEccc----------CChhhHHHHHHHHHhcCCCceEEEE----ecCHH-HHhhHHHHHhh-
Q psy6272 239 DRDKHVVDLIVREAVDIIIMSSV----------TGANSIREMRGMLEDHVDRVLILAK----IETLL-GMEYMDEIIME- 302 (547)
Q Consensus 239 ~~D~~di~~~~~~g~d~I~~sfV----------~sa~di~~~r~~l~~~~~~i~Iiak----IEt~~-av~nldeIl~~- 302 (547)
..+.++++.+++.|||.|.+.+= -+-+++++..+++.+.|+++.+..- =+..+ ..+-++...+.
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e~G 92 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVELG 92 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHHcC
Confidence 35788999999999999999844 4668899999999998886554331 11112 23445555555
Q ss_pred cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcC--CcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 303 SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQG--KPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 303 ~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~g--KPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.|+|+++ |+| ++..|++.+ .|+.++||+. -+-++- +.-+-..|+.-++|+
T Consensus 93 vDaviv~--Dpg--------------~i~l~~e~~p~l~ih~S~q~~--v~N~~~----------~~f~~~~G~~rvVl~ 144 (347)
T COG0826 93 VDAVIVA--DPG--------------LIMLARERGPDLPIHVSTQAN--VTNAET----------AKFWKELGAKRVVLP 144 (347)
T ss_pred CCEEEEc--CHH--------------HHHHHHHhCCCCcEEEeeeEe--cCCHHH----------HHHHHHcCCEEEEeC
Confidence 6999986 777 677888888 9999999964 121111 222445599999999
Q ss_pred CcchHH-HHHHHHHHH
Q psy6272 381 QSEQAH-HRVDILKEI 395 (547)
Q Consensus 381 k~Eta~-eaV~~m~~I 395 (547)
-|-.. |..++..+.
T Consensus 145 -rEls~~ei~~i~~~~ 159 (347)
T COG0826 145 -RELSLEEIKEIKEQT 159 (347)
T ss_pred -ccCCHHHHHHHHHhC
Confidence 88777 544444444
No 76
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=92.49 E-value=3 Score=42.70 Aligned_cols=124 Identities=18% Similarity=0.257 Sum_probs=73.5
Q ss_pred HHHHHHHHHcCCcEEEEcc----c-------CChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-----cCE
Q psy6272 242 KHVVDLIVREAVDIIIMSS----V-------TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-----SDG 305 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf----V-------~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-----~Dg 305 (547)
.+..+.+.+.|+|+|-+.+ + ++++.+.++.+.+.+.- ++.+++|+-.....+++.++++. +|+
T Consensus 114 ~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~ 192 (289)
T cd02810 114 VELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADG 192 (289)
T ss_pred HHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCE
Confidence 4456677788999998753 2 23344545444444322 57899998765544455555544 588
Q ss_pred EEEcCCcccc--------------c---CChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhH
Q psy6272 306 VVLNRIQLAV--------------A---TSVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDV 366 (547)
Q Consensus 306 ImIargDLg~--------------e---~~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv 366 (547)
|.+.-+-.+. . -|....+...+.+-+..+.. ++|++....+- .. .|+
T Consensus 193 i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~------~~--------~da 258 (289)
T cd02810 193 LTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGID------SG--------EDV 258 (289)
T ss_pred EEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCC------CH--------HHH
Confidence 8875221110 0 01112223333344444445 79999877743 23 788
Q ss_pred HHHHHhCccEEeeC
Q psy6272 367 NSIVQDGADVVVLT 380 (547)
Q Consensus 367 ~nav~~g~D~vmLs 380 (547)
..++..|+|+||+.
T Consensus 259 ~~~l~~GAd~V~vg 272 (289)
T cd02810 259 LEMLMAGASAVQVA 272 (289)
T ss_pred HHHHHcCccHheEc
Confidence 88999999999998
No 77
>KOG2550|consensus
Probab=92.14 E-value=0.87 Score=49.44 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=88.4
Q ss_pred ChhhHHHHHHHHHcCCcEEEEcc--cCChhhHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhhcCEEEEcCCccc
Q psy6272 238 ADRDKHVVDLIVREAVDIIIMSS--VTGANSIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIMESDGVVLNRIQLA 314 (547)
Q Consensus 238 t~~D~~di~~~~~~g~d~I~~sf--V~sa~di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~~DgImIargDLg 314 (547)
.+.|+..+....+.|+|+|++-- =+|--+++. .+|+.+...++.||+ -+=|.+=.+|| |.+-+||+=||=|-=+
T Consensus 249 re~dK~rl~ll~~aGvdvviLDSSqGnS~~qiem-ik~iK~~yP~l~ViaGNVVT~~qa~nL--I~aGaDgLrVGMGsGS 325 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEM-IKYIKETYPDLQIIAGNVVTKEQAANL--IAAGADGLRVGMGSGS 325 (503)
T ss_pred ccchhHHHHHhhhcCCcEEEEecCCCcchhHHHH-HHHHHhhCCCceeeccceeeHHHHHHH--HHccCceeEeccccCc
Confidence 46788889999999999999853 233333433 356777777888877 46666777777 7777999988866544
Q ss_pred ccCChHHHH------HHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 315 VATSVEVTF------LAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 315 ~e~~~e~v~------~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+=+--+.+. .+--++.+.|++.|.|||--.. -.-+ .+++.|+..||+.||+.
T Consensus 326 iCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGG------iq~~--------Ghi~KAl~lGAstVMmG 383 (503)
T KOG2550|consen 326 ICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGG------IQNV--------GHVVKALGLGASTVMMG 383 (503)
T ss_pred eeeeceeeeccCCcccchhhHHHHHHhcCCceeecCC------cCcc--------chhHhhhhcCchhheec
Confidence 333322211 1333488899999999996332 2234 99999999999999997
No 78
>PRK15447 putative protease; Provisional
Probab=92.12 E-value=2.5 Score=44.15 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=83.0
Q ss_pred hhHHHHHHHH-HcCCcEEEEcccC-------ChhhHHHHHHHHHhcCCCceE-EEEe-cCHHHHhhHHHHHhh-cCEEEE
Q psy6272 240 RDKHVVDLIV-REAVDIIIMSSVT-------GANSIREMRGMLEDHVDRVLI-LAKI-ETLLGMEYMDEIIME-SDGVVL 308 (547)
Q Consensus 240 ~D~~di~~~~-~~g~d~I~~sfV~-------sa~di~~~r~~l~~~~~~i~I-iakI-Et~~av~nldeIl~~-~DgImI 308 (547)
...+++-.++ +.|||.|.+.... +.+++.++.+.+.+.|+++.+ +..| -..+-++.+.++++. .|+|++
T Consensus 15 ~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v 94 (301)
T PRK15447 15 ETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA 94 (301)
T ss_pred CCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE
Confidence 4566666666 6699999997432 568899999999888887665 3354 445566777787776 377776
Q ss_pred cCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHH
Q psy6272 309 NRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR 388 (547)
Q Consensus 309 argDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ea 388 (547)
+|+| .+..+++.|+|+...||+= .-+ ... +.-+-..|++-+.|| -|-..+-
T Consensus 95 --~d~g--------------~l~~~~e~~~~l~~d~~ln-i~N-~~a----------~~~l~~~G~~rv~ls-~ELsl~e 145 (301)
T PRK15447 95 --NDLG--------------AVRLLAERGLPFVAGPALN-CYN-AAT----------LALLARLGATRWCMP-VELSRDW 145 (301)
T ss_pred --eCHH--------------HHHHHHhcCCCEEEecccc-cCC-HHH----------HHHHHHcCCcEEEEC-CcCCHHH
Confidence 4665 2233344599999998863 111 111 122445699999999 8877755
Q ss_pred HHHHH
Q psy6272 389 VDILK 393 (547)
Q Consensus 389 V~~m~ 393 (547)
++.|.
T Consensus 146 I~~i~ 150 (301)
T PRK15447 146 LANLL 150 (301)
T ss_pred HHHHH
Confidence 55443
No 79
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=91.95 E-value=3.5 Score=40.66 Aligned_cols=119 Identities=19% Similarity=0.190 Sum_probs=70.5
Q ss_pred hHHHHHHHHHcCCcEEEEc--ccCChh--hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccc-
Q psy6272 241 DKHVVDLIVREAVDIIIMS--SVTGAN--SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAV- 315 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~s--fV~sa~--di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~- 315 (547)
+.+.++.+.+.|+|+|.+- ..+.++ .+.++.+.+.+.+ ++.+++.+.|.+-.....+ .-+|.+.+...++.-
T Consensus 81 ~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~--~G~d~i~~~~~g~t~~ 157 (219)
T cd04729 81 TIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAK--LGFDIIGTTLSGYTEE 157 (219)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHH--cCCCEEEccCcccccc
Confidence 4567899999999987662 222233 6777777676666 6788887766554322221 115888664322211
Q ss_pred --cCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 316 --ATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 316 --e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
......+ ..-+++ ....++|++....+- .. .|+..++..|+|++++.
T Consensus 158 ~~~~~~~~~-~~l~~i---~~~~~ipvia~GGI~------~~--------~~~~~~l~~GadgV~vG 206 (219)
T cd04729 158 TAKTEDPDF-ELLKEL---RKALGIPVIAEGRIN------SP--------EQAAKALELGADAVVVG 206 (219)
T ss_pred ccCCCCCCH-HHHHHH---HHhcCCCEEEeCCCC------CH--------HHHHHHHHCCCCEEEEc
Confidence 1111111 112222 223479999876632 12 78888899999999997
No 80
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=91.85 E-value=6.3 Score=41.01 Aligned_cols=115 Identities=14% Similarity=0.109 Sum_probs=66.3
Q ss_pred HHHHHHHHHcCCcEEEEcccCCh--------hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEc-CC
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGA--------NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLN-RI 311 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa--------~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIa-rg 311 (547)
.+.++.+.+.|+|.|.+.+ ..+ +.++++++.+ ++.+++|.- ...+......+. +|+|.+. +|
T Consensus 132 ~~~i~~~~~~g~~~i~l~~-~~p~~~~~~~~~~i~~l~~~~-----~~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g 203 (299)
T cd02809 132 EDLLRRAEAAGYKALVLTV-DTPVLGRRLTWDDLAWLRSQW-----KGPLILKGI--LTPEDALRAVDAGADGIVVSNHG 203 (299)
T ss_pred HHHHHHHHHcCCCEEEEec-CCCCCCCCCCHHHHHHHHHhc-----CCCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC
Confidence 4456777888999988754 222 4555555433 367888831 222333333333 6998883 22
Q ss_pred ccccc--CChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchH
Q psy6272 312 QLAVA--TSVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQA 385 (547)
Q Consensus 312 DLg~e--~~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta 385 (547)
|.. .+...+.. +.+.++.. ..|+|.+..+- .- .|++.++..|||+||+. ....
T Consensus 204 --G~~~~~g~~~~~~----l~~i~~~~~~~ipvia~GGI~------~~--------~d~~kal~lGAd~V~ig-~~~l 260 (299)
T cd02809 204 --GRQLDGAPATIDA----LPEIVAAVGGRIEVLLDGGIR------RG--------TDVLKALALGADAVLIG-RPFL 260 (299)
T ss_pred --CCCCCCCcCHHHH----HHHHHHHhcCCCeEEEeCCCC------CH--------HHHHHHHHcCCCEEEEc-HHHH
Confidence 222 12222211 11112223 48999887743 24 89999999999999998 5433
No 81
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=91.81 E-value=1.4 Score=42.01 Aligned_cols=109 Identities=14% Similarity=0.170 Sum_probs=77.1
Q ss_pred ChhhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCC-CCEEEEeCc-----------------------hhcccc
Q psy6272 421 DPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQ-CPILAVSSL-----------------------GYVCRH 476 (547)
Q Consensus 421 ~~~~~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk~RP~-~pIiavt~~-----------------------~~~ar~ 476 (547)
..++..-..|++.|.+++.+-|+|.|.||+||.+++.+-+. ..++.||+. ..+.+|
T Consensus 10 eNT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~erGa~v~~~ 89 (186)
T COG1751 10 ENTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELKERGAKVLTQ 89 (186)
T ss_pred cchHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHHHcCceeeee
Confidence 44677888899999999999999999999999999999888 899999985 245556
Q ss_pred ccccccceEEeecCCCCCCCCCCHHHHHHHHHHH--------------HHHcCCCCCCCeEEEEecccCCC
Q psy6272 477 LNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQH--------------GMEIGIISPGDPLVLINGWRKGA 533 (547)
Q Consensus 477 l~l~~GV~p~~~~~~~~~~~~~d~d~~I~~a~~~--------------~k~~g~~~~Gd~vvvv~g~~~g~ 533 (547)
-|.+-|+.--+.... .. -..-+.|...+.. +.+.|++..-+.||-+-|..+|.
T Consensus 90 sHalSg~eRsis~kf--GG--~~p~eiiAetLR~fg~G~KVcvEItiMAaDaGlIp~~eeViAiGGt~~Ga 156 (186)
T COG1751 90 SHALSGVERSISRKF--GG--YSPLEIIAETLRMFGQGVKVCVEITIMAADAGLIPVSEEVIAIGGTERGA 156 (186)
T ss_pred hhhhhcchhhhhhhc--CC--cchHHHHHHHHHHhcCCcEEEEEEEEEeccCCCcccceeEEEecccccCC
Confidence 666666544333221 11 1223445555542 34667788788888887777663
No 82
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=91.60 E-value=2.9 Score=38.80 Aligned_cols=116 Identities=18% Similarity=0.143 Sum_probs=70.0
Q ss_pred HHHHHHcCCcEEEEcccCC------hhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccC
Q psy6272 245 VDLIVREAVDIIIMSSVTG------ANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVAT 317 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~s------a~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~ 317 (547)
.+++.+.|+|+|.++.-.. .+-++++++.+ .+..++.++.......... .... +|.+.+..+.-+-..
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~ 151 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYLAREDLELIRELREAV----PDVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGG 151 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhc----CCceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCC
Confidence 5688899999999987763 33344444333 3678888887654433210 1222 699999877654332
Q ss_pred ChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 318 SVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 318 ~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.... ......+....+..++|++.+..+- .- .++..++..|+|+++++
T Consensus 152 ~~~~-~~~~~~~~~~~~~~~~pi~~~GGi~------~~--------~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 152 RDAV-PIADLLLILAKRGSKVPVIAGGGIN------DP--------EDAAEALALGADGVIVG 199 (200)
T ss_pred ccCc-hhHHHHHHHHHhcCCCCEEEECCCC------CH--------HHHHHHHHhCCCEEEec
Confidence 2111 1011112223355789999987642 12 56677888899999986
No 83
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=91.44 E-value=6.1 Score=39.56 Aligned_cols=128 Identities=11% Similarity=0.216 Sum_probs=83.1
Q ss_pred CcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEE--
Q psy6272 231 TFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVL-- 308 (547)
Q Consensus 231 ~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImI-- 308 (547)
.++.--+.+.=...+..-.+.|+|.|.+- +++..++.++-+++.+.|....+...=.| -++.++.++...|.|++
T Consensus 60 ~~dvHLMv~~p~~~i~~~~~~gad~i~~H-~Ea~~~~~~~l~~ik~~g~k~GlalnP~T--p~~~i~~~l~~~D~vlvMt 136 (220)
T PRK08883 60 PIDVHLMVKPVDRIIPDFAKAGASMITFH-VEASEHVDRTLQLIKEHGCQAGVVLNPAT--PLHHLEYIMDKVDLILLMS 136 (220)
T ss_pred CEEEEeccCCHHHHHHHHHHhCCCEEEEc-ccCcccHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHHhCCeEEEEE
Confidence 34444455544556778888999988775 56667888888888888888888888777 67889999999998887
Q ss_pred -cCCccc---ccCChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 309 -NRIQLA---VATSVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 309 -argDLg---~e~~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
-||-=| .+.+++++..+. +...++ +.|+.+...+ + . ..+...+..|+|++.+.
T Consensus 137 V~PGfgGq~fi~~~lekI~~l~----~~~~~~~~~~~I~vdGGI----~---~--------eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 137 VNPGFGGQSFIPHTLDKLRAVR----KMIDESGRDIRLEIDGGV----K---V--------DNIREIAEAGADMFVAG 195 (220)
T ss_pred ecCCCCCceecHhHHHHHHHHH----HHHHhcCCCeeEEEECCC----C---H--------HHHHHHHHcCCCEEEEe
Confidence 222211 122223333332 222333 3666554442 1 1 45556677899999886
No 84
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=90.85 E-value=7.3 Score=37.58 Aligned_cols=120 Identities=13% Similarity=0.243 Sum_probs=73.0
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccc---cCC
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAV---ATS 318 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~---e~~ 318 (547)
.+.++.+.+.|+|+|.++--.+ ++.....+.+.+.+.+..+. ++.....+.+.++...+|++.+..-+-|. ...
T Consensus 69 ~~~~~~~~~~gadgv~vh~~~~-~~~~~~~~~~~~~g~~~~~~--~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~ 145 (210)
T TIGR01163 69 DRYIEDFAEAGADIITVHPEAS-EHIHRLLQLIKDLGAKAGIV--LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFI 145 (210)
T ss_pred HHHHHHHHHcCCCEEEEccCCc-hhHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCccccc
Confidence 3457888899999999975443 44555555665555554443 44444577788888778998875433222 222
Q ss_pred hHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 319 VEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 319 ~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
...+. .-+++.+.+++. ++|+.++..+ . . .++..++..|+|++.+.
T Consensus 146 ~~~~~-~i~~i~~~~~~~~~~~~i~v~GGI--~-----~--------env~~l~~~gad~iivg 193 (210)
T TIGR01163 146 PDTLE-KIREVRKMIDENGLSILIEVDGGV--N-----D--------DNARELAEAGADILVAG 193 (210)
T ss_pred HHHHH-HHHHHHHHHHhcCCCceEEEECCc--C-----H--------HHHHHHHHcCCCEEEEC
Confidence 22222 222343444433 3688776653 1 2 55677788899999998
No 85
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=90.52 E-value=8.2 Score=39.77 Aligned_cols=121 Identities=12% Similarity=0.112 Sum_probs=80.2
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCCh-H
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSV-E 320 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~-e 320 (547)
..-++.+.+.|+|+|++|-.- .++..++.+.+.+.|-+.-.+..=.| -.+.+..|++.++|.+--=+-.|+ .|. .
T Consensus 109 e~F~~~~~~aGvdgviipDLP-~ee~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a~gFIY~vS~~Gv-TG~~~ 184 (263)
T CHL00200 109 NKFIKKISQAGVKGLIIPDLP-YEESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAAPGCIYLVSTTGV-TGLKT 184 (263)
T ss_pred HHHHHHHHHcCCeEEEecCCC-HHHHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhCCCcEEEEcCCCC-CCCCc
Confidence 445788899999999999874 57888888888887755444443333 467899999999965543111222 122 3
Q ss_pred HHHHHHHHHHHHHHHc-CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 321 VTFLAQKMIAARCNKQ-GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 321 ~v~~~qk~ii~~c~~~-gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.+..-.+..++..+++ ++|+.+.-.+ -+ - .++......|||+++..
T Consensus 185 ~~~~~~~~~i~~ir~~t~~Pi~vGFGI---~~---~--------e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 185 ELDKKLKKLIETIKKMTNKPIILGFGI---ST---S--------EQIKQIKGWNINGIVIG 231 (263)
T ss_pred cccHHHHHHHHHHHHhcCCCEEEECCc---CC---H--------HHHHHHHhcCCCEEEEC
Confidence 4444445566666654 8888875431 11 1 56677777899999998
No 86
>PLN02826 dihydroorotate dehydrogenase
Probab=90.45 E-value=11 Score=41.35 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=63.9
Q ss_pred CCceEEEEecCHHHHhhHHHHHhh-----cCEEEEc-----C-Cccc-----ccCC----hHHHHHHHHHHHHHHHHc--
Q psy6272 279 DRVLILAKIETLLGMEYMDEIIME-----SDGVVLN-----R-IQLA-----VATS----VEVTFLAQKMIAARCNKQ-- 336 (547)
Q Consensus 279 ~~i~IiakIEt~~av~nldeIl~~-----~DgImIa-----r-gDLg-----~e~~----~e~v~~~qk~ii~~c~~~-- 336 (547)
.++.|++||=--..-+++++|+.. +|||++. | +|+- .+.| .+-.+.+.+.+-...++.
T Consensus 261 ~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~ 340 (409)
T PLN02826 261 GPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRG 340 (409)
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCC
Confidence 358899999422233345555553 5999775 3 2221 1111 122233444333334444
Q ss_pred CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhh
Q psy6272 337 GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESV 402 (547)
Q Consensus 337 gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~ 402 (547)
..|+|-.+.+. .. .|++.++..||++|.+. .--..+--..+.+|.++.++.
T Consensus 341 ~ipIIgvGGI~------sg--------~Da~e~i~AGAs~VQv~-Ta~~~~Gp~~i~~I~~eL~~~ 391 (409)
T PLN02826 341 KIPLVGCGGVS------SG--------EDAYKKIRAGASLVQLY-TAFAYEGPALIPRIKAELAAC 391 (409)
T ss_pred CCcEEEECCCC------CH--------HHHHHHHHhCCCeeeec-HHHHhcCHHHHHHHHHHHHHH
Confidence 47888888754 35 89999999999999997 322224445666666666643
No 87
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=90.17 E-value=0.79 Score=50.93 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=64.8
Q ss_pred cCCcEEEEcccCChhhHHHHHHHHH----------------hc-----CCCceEEEEecCHHHHhhHHHHHhhc------
Q psy6272 251 EAVDIIIMSSVTGANSIREMRGMLE----------------DH-----VDRVLILAKIETLLGMEYMDEIIMES------ 303 (547)
Q Consensus 251 ~g~d~I~~sfV~sa~di~~~r~~l~----------------~~-----~~~i~IiakIEt~~av~nldeIl~~~------ 303 (547)
..+-.|++||++|++++..+..++. +. -+.+.||.-||+..++-|.++|+..-
T Consensus 119 ~pIfEVILPMtts~~~l~~v~~~y~~~v~~k~~~~~~~~~~E~~g~~~p~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~ 198 (491)
T PF14010_consen 119 QPIFEVILPMTTSAEELIRVYRYYRKFVAGKQEKLYDITVKEWIGEFDPEEIEVIPLFEDVDSLLNADEILEEYLKDKGR 198 (491)
T ss_dssp -S-SEEEESS--SHHHHHHHHHHHHHHHH--------HHHHH-SS---TTSSEEEEEE-SHHHHHTHHHHHHHHHHHTT-
T ss_pred cchheeeccccCCHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhccccCcCcceEeeccccHHHHhcHHHHHHHHHHHhcC
Confidence 3567899999999999998866541 11 14689999999999999999999872
Q ss_pred C----EEEEcCCcccccCChHH----HHHHHHHHHHHHHHcCCcEE
Q psy6272 304 D----GVVLNRIQLAVATSVEV----TFLAQKMIAARCNKQGKPFL 341 (547)
Q Consensus 304 D----gImIargDLg~e~~~e~----v~~~qk~ii~~c~~~gKPvi 341 (547)
+ -||+||.|-++..|+=. +..|-.++-+.-.+.|.|+.
T Consensus 199 ~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~Iy 244 (491)
T PF14010_consen 199 DPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIY 244 (491)
T ss_dssp --SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred CchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 2 79999999999999832 23344556666688899975
No 88
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=90.16 E-value=2.9 Score=44.81 Aligned_cols=209 Identities=19% Similarity=0.244 Sum_probs=120.3
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHH----------------------HHHhcCCCceEEEEecCHHHHhhHHH
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRG----------------------MLEDHVDRVLILAKIETLLGMEYMDE 298 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~----------------------~l~~~~~~i~IiakIEt~~av~nlde 298 (547)
.++.+..|++.|+|.|+++- .+++.++++-+ .+...+..+..+..|.+.+.++.+-+
T Consensus 14 ~k~~vt~AlEsGvd~vv~~~-~~~~~~~~lg~~~vi~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~i~~~~~~~~a~~ 92 (354)
T PF01959_consen 14 RKEVVTAALESGVDGVVVDD-EDVEKVRELGRIKVIAFDSDGEGDGTDDLPDLKALKAEGKEVGVYVEITDKEDEEEACE 92 (354)
T ss_pred HHHHHHHHHHcCCCEEEECH-hHhhhhhccceEEEEeccccccCCccccchhhhhhhccCceEEEEEEECCHHHHHHHHH
Confidence 37889999999999999885 22333332211 11233556668899999999999999
Q ss_pred HHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEe
Q psy6272 299 IIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVV 378 (547)
Q Consensus 299 Il~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vm 378 (547)
.....|-+++--.|..+ +|+|.+-. +....+.-++.. ..+-.|. .=...+...|+|+|+
T Consensus 93 ~~~~~~~~iv~~~Dw~i-IPlEnliA-------~~~~~~~~i~a~-----v~~~~eA--------~~~~~~LE~G~dGVl 151 (354)
T PF01959_consen 93 LAKRADYVIVEFRDWTI-IPLENLIA-------ALQGSSTKIIAV-----VADAEEA--------RVALEVLEKGVDGVL 151 (354)
T ss_pred HhccCCeEEEEcCCCcE-ecHHHHHH-------HhcCCCceEEEE-----eCCHHHH--------HHHHHHHhcCCCeEE
Confidence 99888988887667664 78776532 222233334432 2222333 335688999999999
Q ss_pred eCCcchHHHHHHHHHHHHHHhhh-hhhhH----------HHHHHhhhcCCCCCChhh-----------HHHHHHH-----
Q psy6272 379 LTQSEQAHHRVDILKEILKKTES-VLWEK----------QVFEDLCALACPPLDPAH-----------SIVIACV----- 431 (547)
Q Consensus 379 Lsk~Eta~eaV~~m~~I~~~aE~-~~~~~----------~~f~~~~~~~~~~~~~~~-----------~ia~aav----- 431 (547)
|. .+...+ ++-+...+.+++. .+... .+=+.-+--+.....+-| .+..+-.
T Consensus 152 l~-~~d~~e-i~~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gEGmLVGs~s~glfLVhsEt~~~pY 229 (354)
T PF01959_consen 152 LD-PDDPAE-IKALVALLKERSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGEGMLVGSSSSGLFLVHSETHESPY 229 (354)
T ss_pred EC-CCCHHH-HHHHHHHHhhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCCeEEEcccCceEEEEEeccccCCC
Confidence 99 665553 3334444444221 11000 000000000000000000 0000000
Q ss_pred --HHHHhcCCcEEEEEcCC-chHHHHHHhcCCCCCEEEEeCchhc
Q psy6272 432 --NAALKCQAVAIIVITCS-GYSAKLVSKYRPQCPILAVSSLGYV 473 (547)
Q Consensus 432 --~~a~~~~a~aIvv~T~s-G~tA~~isk~RP~~pIiavt~~~~~ 473 (547)
..-++.||.++=.|+.. |...++||-.|..-.|++|..+.++
T Consensus 230 va~RPFRVNAGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~t 274 (354)
T PF01959_consen 230 VASRPFRVNAGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRT 274 (354)
T ss_pred CCCCCceEecCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCE
Confidence 01256788877777666 6666899999999999999987543
No 89
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.97 E-value=5.3 Score=38.41 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceE-EEEecCHHHHhhHHHHHh-hcCEEEEcCCcccc----c
Q psy6272 243 HVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLI-LAKIETLLGMEYMDEIIM-ESDGVVLNRIQLAV----A 316 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~I-iakIEt~~av~nldeIl~-~~DgImIargDLg~----e 316 (547)
..++.+.+.|+|+|.++.-...+.+.++.+++.+.|..+.+ +..-.|++-+.. ++. -+|.+.+.++--+. .
T Consensus 68 ~~~~~~~~aGad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~---~~~~~~d~v~~~~~~~~~~~~~~ 144 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK---LLKLGVDIVILHRGIDAQAAGGW 144 (202)
T ss_pred HHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH---HHHCCCCEEEEcCcccccccCCC
Confidence 34678899999999998876666677777777765543322 235555544432 444 47998887642222 2
Q ss_pred CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 317 TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 317 ~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.+.+.+..+. +..+.|+.+...+ + . .++..+...|+|++.+.
T Consensus 145 ~~~~~i~~~~-------~~~~~~i~~~GGI----~---~--------~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 145 WPEDDLKKVK-------KLLGVKVAVAGGI----T---P--------DTLPEFKKAGADIVIVG 186 (202)
T ss_pred CCHHHHHHHH-------hhcCCCEEEECCc----C---H--------HHHHHHHhcCCCEEEEe
Confidence 2222322222 2257888775442 1 2 56677888899999997
No 90
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=89.75 E-value=9.5 Score=40.28 Aligned_cols=115 Identities=22% Similarity=0.307 Sum_probs=64.0
Q ss_pred CCcEEEEcc----c------CChhhHHHHHHHH----HhcCCCceEEEEecCHHHHhhHHHHHhh-----cCEEEE-cCC
Q psy6272 252 AVDIIIMSS----V------TGANSIREMRGML----EDHVDRVLILAKIETLLGMEYMDEIIME-----SDGVVL-NRI 311 (547)
Q Consensus 252 g~d~I~~sf----V------~sa~di~~~r~~l----~~~~~~i~IiakIEt~~av~nldeIl~~-----~DgImI-arg 311 (547)
++|+|-+.| + ++.+.+.++-+.+ .+.+.++.+++|+---...+++.++++. +|||-+ +|-
T Consensus 160 ~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~ 239 (327)
T cd04738 160 YADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTT 239 (327)
T ss_pred hCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 489988765 1 1223444443333 2223468899999422222344444443 488874 421
Q ss_pred ---------ccccc----CChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccE
Q psy6272 312 ---------QLAVA----TSVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADV 376 (547)
Q Consensus 312 ---------DLg~e----~~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~ 376 (547)
.+... -|....+.+.+.+-...+.. +.|++....+. .. .|+..++..|||+
T Consensus 240 ~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~------t~--------~da~e~l~aGAd~ 305 (327)
T cd04738 240 ISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGIS------SG--------EDAYEKIRAGASL 305 (327)
T ss_pred ccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCC------CH--------HHHHHHHHcCCCH
Confidence 00000 12223334444444444444 58999877743 24 8888899999999
Q ss_pred EeeC
Q psy6272 377 VVLT 380 (547)
Q Consensus 377 vmLs 380 (547)
||+.
T Consensus 306 V~vg 309 (327)
T cd04738 306 VQLY 309 (327)
T ss_pred Hhcc
Confidence 9998
No 91
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=89.61 E-value=8.7 Score=40.57 Aligned_cols=143 Identities=18% Similarity=0.211 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCcEEEEccc--CC-h--------hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-----cCEE
Q psy6272 243 HVVDLIVREAVDIIIMSSV--TG-A--------NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-----SDGV 306 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~sfV--~s-a--------~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-----~DgI 306 (547)
+..+.+.+.|+|+|-+.+= .. . +.+.++-+.+.+. -++.+++|+- + .+.++.++++. +|||
T Consensus 116 ~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~-~~iPv~vKl~-p-~~~~~~~~a~~l~~~Gadgi 192 (325)
T cd04739 116 DYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSA-VTIPVAVKLS-P-FFSALAHMAKQLDAAGADGL 192 (325)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhc-cCCCEEEEcC-C-CccCHHHHHHHHHHcCCCeE
Confidence 3344555679999977552 21 1 1122222222221 2589999984 2 24466666655 4877
Q ss_pred EE-cCCcccccCC--------------hHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHH
Q psy6272 307 VL-NRIQLAVATS--------------VEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQ 371 (547)
Q Consensus 307 mI-argDLg~e~~--------------~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~ 371 (547)
.+ +|. .+..+. ....+.+.+.+-..++..+.|++-...+. .. .|+..+++
T Consensus 193 ~~~nt~-~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~------s~--------~Da~e~l~ 257 (325)
T cd04739 193 VLFNRF-YQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVH------DA--------EDVVKYLL 257 (325)
T ss_pred EEEcCc-CCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCC------CH--------HHHHHHHH
Confidence 65 332 111111 11223444444444555689998877744 24 89999999
Q ss_pred hCccEEeeCCcchHHHHHHHHHHHHHHhhhhhh
Q psy6272 372 DGADVVVLTQSEQAHHRVDILKEILKKTESVLW 404 (547)
Q Consensus 372 ~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~ 404 (547)
.|||+|++. ..-..+.-....+|+++.+..+.
T Consensus 258 aGA~~Vqv~-ta~~~~gp~~~~~i~~~L~~~l~ 289 (325)
T cd04739 258 AGADVVMTT-SALLRHGPDYIGTLLAGLEAWME 289 (325)
T ss_pred cCCCeeEEe-hhhhhcCchHHHHHHHHHHHHHH
Confidence 999999998 44333556677788888876543
No 92
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=89.37 E-value=15 Score=38.00 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=73.0
Q ss_pred CCcEEEEccc------------CChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-----cCEEEEc-----
Q psy6272 252 AVDIIIMSSV------------TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-----SDGVVLN----- 309 (547)
Q Consensus 252 g~d~I~~sfV------------~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-----~DgImIa----- 309 (547)
++|+|-+.+= .+++.+.++-+.+.+.- ++.|++||- ..+++..++++. +|+|.+.
T Consensus 118 ~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~--~~~~~~~~~a~~l~~~G~d~i~v~nt~~~ 194 (300)
T TIGR01037 118 YVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-DVPVFAKLS--PNVTDITEIAKAAEEAGADGLTLINTLRG 194 (300)
T ss_pred ccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEECC--CChhhHHHHHHHHHHcCCCEEEEEccCCc
Confidence 3888876422 34444444444444322 578999994 123344444433 5999873
Q ss_pred CC-ccc-------cc----CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEE
Q psy6272 310 RI-QLA-------VA----TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVV 377 (547)
Q Consensus 310 rg-DLg-------~e----~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~v 377 (547)
+. |+. .. .|....+...+.+-+..+..++|+|....+. .. .|+..++..|+|+|
T Consensus 195 ~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ipvi~~GGI~------s~--------~da~~~l~~GAd~V 260 (300)
T TIGR01037 195 MKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDIPIIGVGGIT------SF--------EDALEFLMAGASAV 260 (300)
T ss_pred cccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCCCEEEECCCC------CH--------HHHHHHHHcCCCce
Confidence 11 111 00 1122223334444444455689999877644 23 77788889999999
Q ss_pred eeCCcchHHHHHHHHHHHHHHhhhh
Q psy6272 378 VLTQSEQAHHRVDILKEILKKTESV 402 (547)
Q Consensus 378 mLsk~Eta~eaV~~m~~I~~~aE~~ 402 (547)
|+. .....+- .+.++|.++.++.
T Consensus 261 ~ig-r~~l~~p-~~~~~i~~~l~~~ 283 (300)
T TIGR01037 261 QVG-TAVYYRG-FAFKKIIEGLIAF 283 (300)
T ss_pred eec-HHHhcCc-hHHHHHHHHHHHH
Confidence 998 3333322 4455555555544
No 93
>PLN02591 tryptophan synthase
Probab=88.96 E-value=5.4 Score=40.86 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=77.1
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEE--EcCCcccccCCh
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVV--LNRIQLAVATSV 319 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgIm--IargDLg~e~~~ 319 (547)
..-++.+.+.|+|++++|=.- .++..++++.+.+.|- ..|.-+--...-+.+..|++.++|.+ |+| .|+.=.-
T Consensus 96 ~~F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~gl--~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~--~GvTG~~ 170 (250)
T PLN02591 96 DKFMATIKEAGVHGLVVPDLP-LEETEALRAEAAKNGI--ELVLLTTPTTPTERMKAIAEASEGFVYLVSS--TGVTGAR 170 (250)
T ss_pred HHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCC--eEEEEeCCCCCHHHHHHHHHhCCCcEEEeeC--CCCcCCC
Confidence 345788889999999999653 4777778877776553 33333311222457888998887665 233 2222111
Q ss_pred HHHHHHHHHHHHHHHH-cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 320 EVTFLAQKMIAARCNK-QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 320 e~v~~~qk~ii~~c~~-~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
..++...+..++.+++ .++|+++...+ -+ - .|+......|+|++...
T Consensus 171 ~~~~~~~~~~i~~vk~~~~~Pv~vGFGI---~~---~--------e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 171 ASVSGRVESLLQELKEVTDKPVAVGFGI---SK---P--------EHAKQIAGWGADGVIVG 218 (250)
T ss_pred cCCchhHHHHHHHHHhcCCCceEEeCCC---CC---H--------HHHHHHHhcCCCEEEEC
Confidence 2334444566667776 49999987652 12 1 67788888899999998
No 94
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=88.94 E-value=9.9 Score=37.49 Aligned_cols=119 Identities=8% Similarity=0.164 Sum_probs=66.6
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEec---------------CHHHHhhHHHHHhh-cC
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIE---------------TLLGMEYMDEIIME-SD 304 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIE---------------t~~av~nldeIl~~-~D 304 (547)
+.++++..++.|+|.|++..- ..++...++++.+..+.+-.+++ |. ....++.+..+.+. +|
T Consensus 84 ~~e~~~~~~~~Gad~vvigs~-~l~dp~~~~~i~~~~g~~~i~~s-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~ 161 (234)
T cd04732 84 SLEDIERLLDLGVSRVIIGTA-AVKNPELVKELLKEYGGERIVVG-LDAKDGKVATKGWLETSEVSLEELAKRFEELGVK 161 (234)
T ss_pred CHHHHHHHHHcCCCEEEECch-HHhChHHHHHHHHHcCCceEEEE-EEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCC
Confidence 467788888999999987643 23445555555555444222222 11 11222333333333 68
Q ss_pred EEEEc-CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 305 GVVLN-RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 305 gImIa-rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
++++. +.--+..-| ..+. .+-+.++....|++.+..+- .. .|+..+...|+|++|+.
T Consensus 162 ~iii~~~~~~g~~~g-~~~~----~i~~i~~~~~ipvi~~GGi~------~~--------~di~~~~~~Ga~gv~vg 219 (234)
T cd04732 162 AIIYTDISRDGTLSG-PNFE----LYKELAAATGIPVIASGGVS------SL--------DDIKALKELGVAGVIVG 219 (234)
T ss_pred EEEEEeecCCCccCC-CCHH----HHHHHHHhcCCCEEEecCCC------CH--------HHHHHHHHCCCCEEEEe
Confidence 88765 222222222 1221 12223445689999987743 23 67777777899999997
No 95
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=88.75 E-value=17 Score=35.44 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=69.0
Q ss_pred CCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccc
Q psy6272 236 VIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAV 315 (547)
Q Consensus 236 ~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~ 315 (547)
-++....+.+..+.+.|+|+|.++--.+. +.....+.+...+. .+..-+......+.+.++...+|.+.+...+-|.
T Consensus 68 l~v~d~~~~i~~~~~~g~d~v~vh~~~~~-~~~~~~~~~~~~~~--~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~ 144 (220)
T PRK05581 68 LMVENPDRYVPDFAKAGADIITFHVEASE-HIHRLLQLIKSAGI--KAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGF 144 (220)
T ss_pred eeeCCHHHHHHHHHHcCCCEEEEeeccch-hHHHHHHHHHHcCC--EEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCC
Confidence 34444455677778999999999887663 33344444444443 3333443223466677888788988776433332
Q ss_pred cCC-h-HHHHHHHHHHHHHHHHcCC-c-EEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 316 ATS-V-EVTFLAQKMIAARCNKQGK-P-FLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 316 e~~-~-e~v~~~qk~ii~~c~~~gK-P-vi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.-. . +......+++...+..++. | +.++..+ .| .++..+...|+|++.+.
T Consensus 145 tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI--~~-------------~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 145 GGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGI--NA-------------DNIKECAEAGADVFVAG 198 (220)
T ss_pred CcccccHHHHHHHHHHHHHHHhcCCCceEEEECCC--CH-------------HHHHHHHHcCCCEEEEC
Confidence 211 1 1222222233333443333 3 4354442 11 34455666899999997
No 96
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=88.73 E-value=9.7 Score=39.44 Aligned_cols=141 Identities=18% Similarity=0.255 Sum_probs=74.2
Q ss_pred HHHHHHHHHcC-CcEEEEc----c--------cCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-----c
Q psy6272 242 KHVVDLIVREA-VDIIIMS----S--------VTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-----S 303 (547)
Q Consensus 242 ~~di~~~~~~g-~d~I~~s----f--------V~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-----~ 303 (547)
.+..+.+.+.| +|+|-+. . -++.+.+.++-+.+.+.- ++.|++||=- .++++.++++. +
T Consensus 107 ~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~--~~~~~~~~a~~l~~~G~ 183 (301)
T PRK07259 107 AEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTP--NVTDIVEIAKAAEEAGA 183 (301)
T ss_pred HHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCC--CchhHHHHHHHHHHcCC
Confidence 33345666778 9999652 2 223344444444444332 6789999851 23344444443 4
Q ss_pred CEEEE-----cCC-ccc-------cc----CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhH
Q psy6272 304 DGVVL-----NRI-QLA-------VA----TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDV 366 (547)
Q Consensus 304 DgImI-----arg-DLg-------~e----~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv 366 (547)
|+|.+ ++. |+- .. -|....+...+.+-+..+..++|++....+. .. .|+
T Consensus 184 d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~------~~--------~da 249 (301)
T PRK07259 184 DGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGIS------SA--------EDA 249 (301)
T ss_pred CEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCC------CH--------HHH
Confidence 88765 211 221 01 1111112223333333344589999877643 23 778
Q ss_pred HHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhh
Q psy6272 367 NSIVQDGADVVVLTQSEQAHHRVDILKEILKKTES 401 (547)
Q Consensus 367 ~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~ 401 (547)
..++..|+|+|++. ..-.. --.+..+|.+..+.
T Consensus 250 ~~~l~aGAd~V~ig-r~ll~-~P~~~~~i~~~l~~ 282 (301)
T PRK07259 250 IEFIMAGASAVQVG-TANFY-DPYAFPKIIEGLEA 282 (301)
T ss_pred HHHHHcCCCceeEc-HHHhc-CcHHHHHHHHHHHH
Confidence 88899999999998 22222 23344455444443
No 97
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=88.71 E-value=27 Score=34.80 Aligned_cols=135 Identities=16% Similarity=0.102 Sum_probs=81.5
Q ss_pred CCCChhhHHH-HHHHHHcCCcEEEEcccCCh------hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEE
Q psy6272 235 PVIADRDKHV-VDLIVREAVDIIIMSSVTGA------NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGV 306 (547)
Q Consensus 235 p~lt~~D~~d-i~~~~~~g~d~I~~sfV~sa------~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgI 306 (547)
..++..++.. ++...+.|+|.|-+.+-.+. ++..++-+.+.+.+.+..+.+..=+ +.+.++...+. .|.|
T Consensus 14 ~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~--~~~~i~~a~~~g~~~i 91 (265)
T cd03174 14 ATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN--REKGIERALEAGVDEV 91 (265)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC--chhhHHHHHhCCcCEE
Confidence 3445565444 66777889999999988887 7777766667666655565555433 24444444444 3655
Q ss_pred EEcCCccc-------ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCC--CCcccccccCccchhhHH-HHHHhCccE
Q psy6272 307 VLNRIQLA-------VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPD--HNVEEYSDVSIGDMNDVN-SIVQDGADV 376 (547)
Q Consensus 307 mIargDLg-------~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~--PtraE~~~~~~~~~~Dv~-nav~~g~D~ 376 (547)
-+. .+.+ ...+.+.....-...++.++++|.++.+.+...-. -+..++ .+++ .+...|+|.
T Consensus 92 ~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l--------~~~~~~~~~~g~~~ 162 (265)
T cd03174 92 RIF-DSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYV--------LEVAKALEEAGADE 162 (265)
T ss_pred EEE-EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHH--------HHHHHHHHHcCCCE
Confidence 544 1111 00233334555556888999999999887531112 222233 5555 356679999
Q ss_pred EeeC
Q psy6272 377 VVLT 380 (547)
Q Consensus 377 vmLs 380 (547)
+.|.
T Consensus 163 i~l~ 166 (265)
T cd03174 163 ISLK 166 (265)
T ss_pred EEec
Confidence 9996
No 98
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=88.32 E-value=7.2 Score=37.50 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccc---cCCh
Q psy6272 243 HVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAV---ATSV 319 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~---e~~~ 319 (547)
+.++.+.+.|+|+|.++--.+. +..+..+.+...+ +.+..-+......+.+.++...+|.+.++.-+.|. ..+.
T Consensus 71 ~~~~~~~~~g~dgv~vh~~~~~-~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~ 147 (211)
T cd00429 71 RYIEAFAKAGADIITFHAEATD-HLHRTIQLIKELG--MKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIP 147 (211)
T ss_pred HHHHHHHHcCCCEEEECccchh-hHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCH
Confidence 3578888999999999876663 3333444444333 33333343223456677777778988776544332 2222
Q ss_pred HHHHHHHHHHHHHHH--HcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 320 EVTFLAQKMIAARCN--KQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 320 e~v~~~qk~ii~~c~--~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
..+..+ +++.+... ..++|+.++..+= . .++..++..|+|++...
T Consensus 148 ~~~~~i-~~~~~~~~~~~~~~pi~v~GGI~-------~--------env~~~~~~gad~iivg 194 (211)
T cd00429 148 EVLEKI-RKLRELIPENNLNLLIEVDGGIN-------L--------ETIPLLAEAGADVLVAG 194 (211)
T ss_pred HHHHHH-HHHHHHHHhcCCCeEEEEECCCC-------H--------HHHHHHHHcCCCEEEEC
Confidence 212111 11222221 2247988876531 2 55677788899999998
No 99
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.32 E-value=4.6 Score=38.05 Aligned_cols=93 Identities=12% Similarity=0.126 Sum_probs=59.5
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCC-CceEEEEecCH-------HHHhhHHHHHhh-cCEEEEcCCc
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVD-RVLILAKIETL-------LGMEYMDEIIME-SDGVVLNRIQ 312 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~-~i~IiakIEt~-------~av~nldeIl~~-~DgImIargD 312 (547)
.+.++++++.|+|+|.+.. +-++.+++.. .. ++.+++++=.. +.++..++-.+. +|++++...-
T Consensus 16 ~~~~~~~~~~gv~gi~~~g----~~i~~~~~~~---~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 16 AKLCDEAIEYGFAAVCVNP----GYVRLAADAL---AGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI 88 (201)
T ss_pred HHHHHHHHHhCCcEEEECH----HHHHHHHHHh---CCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH
Confidence 3445788899999999986 4444444443 34 68899998654 466666666655 7999986321
Q ss_pred ccccCC--hHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 313 LAVATS--VEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 313 Lg~e~~--~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
..... .+.+...-+++.+.| +.+.|+++-
T Consensus 89 -~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy 119 (201)
T cd00945 89 -GSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVI 119 (201)
T ss_pred -HHHhCCCHHHHHHHHHHHHHHh-cCCceEEEE
Confidence 11111 345555556666666 569998873
No 100
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=88.23 E-value=2.5 Score=42.05 Aligned_cols=75 Identities=11% Similarity=0.080 Sum_probs=49.9
Q ss_pred CChhhHHH-HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEE----EecCHH-HHhhHHHHHhh-cCEEEEc
Q psy6272 237 IADRDKHV-VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILA----KIETLL-GMEYMDEIIME-SDGVVLN 309 (547)
Q Consensus 237 lt~~D~~d-i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~Iia----kIEt~~-av~nldeIl~~-~DgImIa 309 (547)
++...+.. ...+.+.|+|+|.++|..+ ++.+++..+.. .+.+++ ++.|.+ .++|+.+.++. ++|+.+|
T Consensus 140 ~~~~~i~~~~~~a~~~GaD~Ik~~~~~~---~~~~~~i~~~~--~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 140 KDPDLIAYAARIGAELGADIVKTKYTGD---AESFKEVVEGC--PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred cCHHHHHHHHHHHHHHCCCEEEecCCCC---HHHHHHHHhcC--CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 45555554 5668899999999998664 44444444322 233433 233333 67889999988 8999999
Q ss_pred CCccccc
Q psy6272 310 RIQLAVA 316 (547)
Q Consensus 310 rgDLg~e 316 (547)
|.=+..+
T Consensus 215 ~~i~~~~ 221 (235)
T cd00958 215 RNIFQRP 221 (235)
T ss_pred hhhhcCC
Confidence 9876554
No 101
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=88.17 E-value=17 Score=38.99 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=58.5
Q ss_pred CChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCCcccccCCh-HHHHHHHHHHHHHHHHc
Q psy6272 262 TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRIQLAVATSV-EVTFLAQKMIAARCNKQ 336 (547)
Q Consensus 262 ~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIargDLg~e~~~-e~v~~~qk~ii~~c~~~ 336 (547)
-+.++++.+++.. +..|+.| ++.+.++...+ +|+|.|. +--|..+.. .....+...+....++.
T Consensus 200 ~~~~~i~~l~~~~-----~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~~ 268 (344)
T cd02922 200 LTWDDIKWLRKHT-----KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPEV 268 (344)
T ss_pred CCHHHHHHHHHhc-----CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 3445566665543 4678888 33455555444 5998876 433443321 11122333344433333
Q ss_pred --CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 337 --GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 337 --gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
..|+|.+..+- -- .|++.++..|||++++. .....
T Consensus 269 ~~~~~vi~~GGIr------~G--------~Dv~kalaLGA~aV~iG-~~~l~ 305 (344)
T cd02922 269 FDKIEVYVDGGVR------RG--------TDVLKALCLGAKAVGLG-RPFLY 305 (344)
T ss_pred CCCceEEEeCCCC------CH--------HHHHHHHHcCCCEEEEC-HHHHH
Confidence 47999877643 35 89999999999999998 44333
No 102
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=87.89 E-value=15 Score=40.55 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=72.6
Q ss_pred hHHHHHHHHHcCCcEEEEcc-cCChhhHHHHHHH-H--HhcC---CCceEEEEecCHHHHh---------hHHHHHhh--
Q psy6272 241 DKHVVDLIVREAVDIIIMSS-VTGANSIREMRGM-L--EDHV---DRVLILAKIETLLGME---------YMDEIIME-- 302 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sf-V~sa~di~~~r~~-l--~~~~---~~i~IiakIEt~~av~---------nldeIl~~-- 302 (547)
+.+.++..+++|+..|..|. ..-...+...|.. + ...+ ....|++|+-+++-.. -++.+.+.
T Consensus 84 e~~~v~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~ 163 (418)
T cd04742 84 EEGLVDLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGK 163 (418)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCC
Confidence 45568899999999998884 3322233222221 0 0000 1246999987654441 11222222
Q ss_pred --------------cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHc--------CCcEEEEcCCCCCCCcccccccCc
Q psy6272 303 --------------SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQ--------GKPFLVVGDILPDHNVEEYSDVSI 360 (547)
Q Consensus 303 --------------~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~--------gKPvi~aTq~Le~PtraE~~~~~~ 360 (547)
+|.|.+. .|=|-+.+-......--.|.+.+.+. .+|||.|..+- | -
T Consensus 164 it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~---t---g----- 231 (418)
T cd04742 164 ITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG---T---P----- 231 (418)
T ss_pred CCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC---C---H-----
Confidence 5888888 77776655321222222233333222 58999998743 1 2
Q ss_pred cchhhHHHHHHhCccEEeeC
Q psy6272 361 GDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 361 ~~~~Dv~nav~~g~D~vmLs 380 (547)
.+++.|...|||+|.+.
T Consensus 232 ---~~vaAA~alGAd~V~~G 248 (418)
T cd04742 232 ---EAAAAAFALGADFIVTG 248 (418)
T ss_pred ---HHHHHHHHcCCcEEeec
Confidence 78899999999999997
No 103
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=87.54 E-value=7.6 Score=40.72 Aligned_cols=132 Identities=20% Similarity=0.287 Sum_probs=86.0
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHH--------------------------------------------HHhc
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGM--------------------------------------------LEDH 277 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~--------------------------------------------l~~~ 277 (547)
+..|..+++.|+|.|.+. ++|+.+++++ +.+.
T Consensus 18 K~~it~alEaG~d~vvv~----~~dvervkeLGni~vaa~~~daDiv~vgk~gegdgt~~lp~~~~~s~di~~~~~~~~~ 93 (376)
T COG1465 18 KKRITAALEAGVDVVVVR----PADVERVKELGNIKVAAPSDDADIVVVGKDGEGDGTVDLPADISGSADIEALRELMDR 93 (376)
T ss_pred hHHHHHHHhcCCCEEEEC----HHHHHHHHhhCceEEecccCCCceEEeccCCCCCCcccCcccccccccHHHHHHhhhc
Confidence 456889999999998875 3566665541 1234
Q ss_pred CCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHH-HHHHHHHHHHHcCCcEEEEcCCCCCCCccccc
Q psy6272 278 VDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFL-AQKMIAARCNKQGKPFLVVGDILPDHNVEEYS 356 (547)
Q Consensus 278 ~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~-~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~ 356 (547)
|........|.+.+--+-.-++...+|.+++---|..+ +|+|.+-. .| +-+--++|. .-+.+|.
T Consensus 94 G~~~~~yV~I~~ke~EefA~~~~~~~d~~i~~g~DWki-IPLENlIA~l~---------~e~~kliA~----V~saeEA- 158 (376)
T COG1465 94 GHEVAAYVEIRSKEDEEFAAERAKVADYVIVVGEDWKI-IPLENLIADLQ---------HEKVKLIAG----VKSAEEA- 158 (376)
T ss_pred CcceEEEEEEcCccchHHHHhhccccceEEEEcCcceE-eeHHHHHHHhh---------ccceEEEEE----eccHHHH-
Confidence 56677888999998888888888888977766556554 67776531 22 122223321 2233333
Q ss_pred ccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhh
Q psy6272 357 DVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTES 401 (547)
Q Consensus 357 ~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~ 401 (547)
.=.......|+|+++|+ ++- .+-++-..++.+++|+
T Consensus 159 -------~vA~eTLE~GaDgVll~-~~d-~~eIk~~~~~~~e~~~ 194 (376)
T COG1465 159 -------RVALETLEKGADGVLLD-SDD-PEEIKKTAEVVEEAES 194 (376)
T ss_pred -------HHHHHHHhccCceEEeC-CCC-HHHHHHHHHHHHHhcc
Confidence 33457888999999999 662 3556666667777774
No 104
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=87.47 E-value=22 Score=37.18 Aligned_cols=132 Identities=11% Similarity=0.221 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCcEEEE------------------cccCChhhHHHHHHHHHh-cCCCceEEEEecCH-------HHHhh
Q psy6272 242 KHVVDLIVREAVDIIIM------------------SSVTGANSIREMRGMLED-HVDRVLILAKIETL-------LGMEY 295 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~------------------sfV~sa~di~~~r~~l~~-~~~~i~IiakIEt~-------~av~n 295 (547)
.+.++...+.|+.+|.+ +.+...+-+++++..... .+.++.|+|..+.. ++++.
T Consensus 95 ~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~R 174 (285)
T TIGR02320 95 RRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKR 174 (285)
T ss_pred HHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHH
Confidence 34466778899999999 334444556666666654 36679999997765 44444
Q ss_pred HHHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHc-----CCcEEEEcCCCCCCCcccccccCccchhhHHHH
Q psy6272 296 MDEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQ-----GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSI 369 (547)
Q Consensus 296 ldeIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~-----gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~na 369 (547)
...-.++ +|+||+- + .....+++ .+.+++. .+|+.+ .|+.-.. ..+...
T Consensus 175 a~ay~eAGAD~ifv~-~---~~~~~~ei-------~~~~~~~~~~~p~~pl~~------~~~~~~~--------~~~~eL 229 (285)
T TIGR02320 175 AEAYAEAGADGIMIH-S---RKKDPDEI-------LEFARRFRNHYPRTPLVI------VPTSYYT--------TPTDEF 229 (285)
T ss_pred HHHHHHcCCCEEEec-C---CCCCHHHH-------HHHHHHhhhhCCCCCEEE------ecCCCCC--------CCHHHH
Confidence 4444444 6999995 1 01112222 2333333 358754 2221111 223334
Q ss_pred HHhCccEEeeCCcchHHHHHHHHHHHHHHh
Q psy6272 370 VQDGADVVVLTQSEQAHHRVDILKEILKKT 399 (547)
Q Consensus 370 v~~g~D~vmLsk~Eta~eaV~~m~~I~~~a 399 (547)
-..|+..+... .-...-+.+.|....++.
T Consensus 230 ~~lG~~~v~~~-~~~~~aa~~a~~~~~~~~ 258 (285)
T TIGR02320 230 RDAGISVVIYA-NHLLRAAYAAMQQVAERI 258 (285)
T ss_pred HHcCCCEEEEh-HHHHHHHHHHHHHHHHHH
Confidence 55699999987 444446666666665554
No 105
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=87.04 E-value=10 Score=37.97 Aligned_cols=86 Identities=12% Similarity=0.136 Sum_probs=57.5
Q ss_pred CCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHH--hhcCE
Q psy6272 228 PRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEII--MESDG 305 (547)
Q Consensus 228 p~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl--~~~Dg 305 (547)
|+..+++-.++..=...++...+.|+|+|.+-+--+...+.+..+.+.+.|..+.+-.. +...++.+.+++ ...|.
T Consensus 64 ~~~~lDvHLm~~~p~~~i~~~~~~Gad~itvH~ea~~~~~~~~l~~ik~~G~~~gval~--p~t~~e~l~~~l~~~~vD~ 141 (228)
T PTZ00170 64 PNTFLDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPKAVARKIREAGMKVGVAIK--PKTPVEVLFPLIDTDLVDM 141 (228)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHCCCeEEEEEC--CCCCHHHHHHHHccchhhh
Confidence 34444544454444556788889999999886554433377888888877766555444 444789999998 66788
Q ss_pred EEEcCCcccccCCh
Q psy6272 306 VVLNRIQLAVATSV 319 (547)
Q Consensus 306 ImIargDLg~e~~~ 319 (547)
|++ ++++.|.
T Consensus 142 Vl~----m~v~pG~ 151 (228)
T PTZ00170 142 VLV----MTVEPGF 151 (228)
T ss_pred HHh----hhcccCC
Confidence 864 5666554
No 106
>PLN02334 ribulose-phosphate 3-epimerase
Probab=86.81 E-value=21 Score=35.53 Aligned_cols=133 Identities=10% Similarity=0.130 Sum_probs=70.8
Q ss_pred CCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccC-ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh--cC
Q psy6272 228 PRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVT-GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--SD 304 (547)
Q Consensus 228 p~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~-sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--~D 304 (547)
++..++.+.+...=-..++.+.+.|+|+|.+..-+ ..+......+.+.+.|..+.+...=.| -++.+.+++.. +|
T Consensus 64 ~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q~~~d~~~~~~~~i~~~g~~iGls~~~~t--~~~~~~~~~~~~~~D 141 (229)
T PLN02334 64 TDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGVVLNPGT--PVEAVEPVVEKGLVD 141 (229)
T ss_pred CCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeeccccchhHHHHHHHHHHCCCeEEEEECCCC--CHHHHHHHHhccCCC
Confidence 44444555555422234677789999999776653 222333333333334544444443122 35567778888 99
Q ss_pred EEEEcCCcccccCChHHH-HHHHHHHHHHHHH--cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 305 GVVLNRIQLAVATSVEVT-FLAQKMIAARCNK--QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 305 gImIargDLg~e~~~e~v-~~~qk~ii~~c~~--~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.|.+++-.-+..- +.. +.....+ ...++ .++|+.+...+ + . .++......|+|++.+.
T Consensus 142 yi~~~~v~pg~~~--~~~~~~~~~~i-~~~~~~~~~~~I~a~GGI----~---~--------e~i~~l~~aGad~vvvg 202 (229)
T PLN02334 142 MVLVMSVEPGFGG--QSFIPSMMDKV-RALRKKYPELDIEVDGGV----G---P--------STIDKAAEAGANVIVAG 202 (229)
T ss_pred EEEEEEEecCCCc--cccCHHHHHHH-HHHHHhCCCCcEEEeCCC----C---H--------HHHHHHHHcCCCEEEEC
Confidence 9987654432211 111 1111112 22222 25677665443 1 2 45566677799999987
No 107
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=86.77 E-value=17 Score=35.16 Aligned_cols=105 Identities=18% Similarity=0.257 Sum_probs=70.1
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEE-EecCHHHHhhHHHHHhh-cCEEEEcCCcccccCC
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILA-KIETLLGMEYMDEIIME-SDGVVLNRIQLAVATS 318 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~Iia-kIEt~~av~nldeIl~~-~DgImIargDLg~e~~ 318 (547)
....++.+++.|++.|-+.+ ++......++.+-.... ++.|-+ -|=|. +++++.+.. +|+|+.+-.|
T Consensus 18 ~~~~~~~l~~~G~~~vev~~-~~~~~~~~i~~l~~~~~-~~~iGag~v~~~---~~~~~a~~~Ga~~i~~p~~~------ 86 (190)
T cd00452 18 ALALAEALIEGGIRAIEITL-RTPGALEAIRALRKEFP-EALIGAGTVLTP---EQADAAIAAGAQFIVSPGLD------ 86 (190)
T ss_pred HHHHHHHHHHCCCCEEEEeC-CChhHHHHHHHHHHHCC-CCEEEEEeCCCH---HHHHHHHHcCCCEEEcCCCC------
Confidence 34556778889999999995 67767776666655433 343333 22223 455666666 7899755333
Q ss_pred hHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 319 VEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 319 ~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
..++..|+..|.|++.. .-| . +++..|...|+|.+.+-
T Consensus 87 --------~~~~~~~~~~~~~~i~g-----v~t---~--------~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 --------PEVVKAANRAGIPLLPG-----VAT---P--------TEIMQALELGADIVKLF 124 (190)
T ss_pred --------HHHHHHHHHcCCcEECC-----cCC---H--------HHHHHHHHCCCCEEEEc
Confidence 24788899999998752 112 2 67788889999999997
No 108
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=86.72 E-value=14 Score=39.28 Aligned_cols=87 Identities=22% Similarity=0.252 Sum_probs=52.7
Q ss_pred CceEEEEecCHHHHhhHHHHHhh-----cCEEEEcC----------CcccccC----ChHHHHHHHHHHHHHHHHc--CC
Q psy6272 280 RVLILAKIETLLGMEYMDEIIME-----SDGVVLNR----------IQLAVAT----SVEVTFLAQKMIAARCNKQ--GK 338 (547)
Q Consensus 280 ~i~IiakIEt~~av~nldeIl~~-----~DgImIar----------gDLg~e~----~~e~v~~~qk~ii~~c~~~--gK 338 (547)
++.|++|+=---.-+++.++++. +|||.+.= ..++... |...-+.+.+.+-...+.. ..
T Consensus 210 ~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~~~i 289 (335)
T TIGR01036 210 RVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQGRL 289 (335)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhCCCC
Confidence 38899999533333356666654 48887521 0001011 2334445555444444444 47
Q ss_pred cEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 339 PFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 339 Pvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
|+|-++.+. .. .|+..++..|||+|.+.
T Consensus 290 piig~GGI~------~~--------~da~e~l~aGA~~Vqv~ 317 (335)
T TIGR01036 290 PIIGVGGIS------SA--------QDALEKIRAGASLLQIY 317 (335)
T ss_pred CEEEECCCC------CH--------HHHHHHHHcCCcHHHhh
Confidence 888877754 24 88999999999999997
No 109
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=86.61 E-value=9.1 Score=43.53 Aligned_cols=124 Identities=13% Similarity=0.094 Sum_probs=84.9
Q ss_pred EeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEE--cccCChhhHHHHHHHHHhcCCCceEEEEec--CHHHH
Q psy6272 218 KLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIM--SSVTGANSIREMRGMLEDHVDRVLILAKIE--TLLGM 293 (547)
Q Consensus 218 ~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~--sfV~sa~di~~~r~~l~~~~~~i~IiakIE--t~~av 293 (547)
.++++.+|.+-.-.-.-..=++.-.+.|....+.|+|.|-+ |-.+.|+.+..+++.|.+.|.++.++|-|= -..|+
T Consensus 24 ~iGG~~PI~VQSMt~t~T~D~~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~A~ 103 (606)
T PRK00694 24 FVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERLIQQGISIPLVADIHFFPQAAM 103 (606)
T ss_pred eECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhccCCCCCEEeecCCChHHHH
Confidence 35666666665433222222344566677888899998755 555666667777777877888999999873 23333
Q ss_pred hhHHHHHhhcCEEEEcCCccccc---------------CChHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 294 EYMDEIIMESDGVVLNRIQLAVA---------------TSVEVTFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 294 ~nldeIl~~~DgImIargDLg~e---------------~~~e~v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
.-+ +.+|.|=|.||.++-. -.++++..--+.++.+|+++|+|+=+.+.
T Consensus 104 ~a~----~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN 166 (606)
T PRK00694 104 HVA----DFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVN 166 (606)
T ss_pred HHH----HhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC
Confidence 322 3389999999999851 12346667778899999999999877665
No 110
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=86.60 E-value=9.7 Score=40.26 Aligned_cols=114 Identities=12% Similarity=0.174 Sum_probs=69.7
Q ss_pred hHHHHHHHHHcCCcEEEEcccCC-hhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCC
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTG-ANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATS 318 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~s-a~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~ 318 (547)
....+..+++.++++|.++|=.- .+-++++++ ..++++.++-|.+....+ ++. +|+|++-=.+=|-+.|
T Consensus 102 ~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~------~gi~v~~~v~s~~~A~~a---~~~G~D~iv~qG~eAGGH~g 172 (330)
T PF03060_consen 102 FEEQLDVALEAKPDVVSFGFGLPPPEVIERLHA------AGIKVIPQVTSVREARKA---AKAGADAIVAQGPEAGGHRG 172 (330)
T ss_dssp HHHHHHHHHHS--SEEEEESSSC-HHHHHHHHH------TT-EEEEEESSHHHHHHH---HHTT-SEEEEE-TTSSEE--
T ss_pred cccccccccccceEEEEeecccchHHHHHHHHH------cCCccccccCCHHHHHHh---hhcCCCEEEEeccccCCCCC
Confidence 56668899999999999998766 444444433 358999998877665543 333 7998876445444444
Q ss_pred h--HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 319 V--EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 319 ~--e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
. +.+.....++.+ ...+|||.|..+- .- .+++.++..|||+|.+.
T Consensus 173 ~~~~~~~~L~~~v~~---~~~iPViaAGGI~------dg--------~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 173 FEVGSTFSLLPQVRD---AVDIPVIAAGGIA------DG--------RGIAAALALGADGVQMG 219 (330)
T ss_dssp -SSG-HHHHHHHHHH---H-SS-EEEESS--------SH--------HHHHHHHHCT-SEEEES
T ss_pred ccccceeeHHHHHhh---hcCCcEEEecCcC------CH--------HHHHHHHHcCCCEeecC
Confidence 1 223333333433 3449999998843 23 78899999999999998
No 111
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=86.41 E-value=11 Score=38.28 Aligned_cols=128 Identities=14% Similarity=0.169 Sum_probs=78.9
Q ss_pred HHHHHHHHHcCCcEEEE---------------cccCChhhHHHHHHHHHhcCC--CceEEEEecCH--------HHHhhH
Q psy6272 242 KHVVDLIVREAVDIIIM---------------SSVTGANSIREMRGMLEDHVD--RVLILAKIETL--------LGMEYM 296 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~---------------sfV~sa~di~~~r~~l~~~~~--~i~IiakIEt~--------~av~nl 296 (547)
.+.++...+.|+++|.+ +.+...+.+++++........ ++.|+|..++. ++++..
T Consensus 87 ~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra 166 (243)
T cd00377 87 ARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERA 166 (243)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHH
Confidence 44467778899999999 556666777777777766554 89999996664 344444
Q ss_pred HHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCcc
Q psy6272 297 DEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGAD 375 (547)
Q Consensus 297 deIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D 375 (547)
..-.+. +|++|+-... -.+++-..+++...|+.+- + .|... . -.....-..|+.
T Consensus 167 ~ay~~AGAD~v~v~~~~------------~~~~~~~~~~~~~~Pl~~~--~--~~~~~-~--------~~~~~l~~lG~~ 221 (243)
T cd00377 167 KAYAEAGADGIFVEGLK------------DPEEIRAFAEAPDVPLNVN--M--TPGGN-L--------LTVAELAELGVR 221 (243)
T ss_pred HHHHHcCCCEEEeCCCC------------CHHHHHHHHhcCCCCEEEE--e--cCCCC-C--------CCHHHHHHCCCe
Confidence 444444 7999996332 1134555666788998873 1 22110 0 112222445999
Q ss_pred EEeeCCcchHHHHHHHHHHH
Q psy6272 376 VVVLTQSEQAHHRVDILKEI 395 (547)
Q Consensus 376 ~vmLsk~Eta~eaV~~m~~I 395 (547)
.+.+. .-...-+.+.|.+.
T Consensus 222 ~v~~~-~~~~~~a~~a~~~~ 240 (243)
T cd00377 222 RVSYG-LALLRAAAKAMREA 240 (243)
T ss_pred EEEEC-hHHHHHHHHHHHHH
Confidence 99997 44444555544443
No 112
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=86.11 E-value=27 Score=33.59 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCcEEEE-----cccCC-hhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCccc
Q psy6272 242 KHVVDLIVREAVDIIIM-----SSVTG-ANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLA 314 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~-----sfV~s-a~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg 314 (547)
.++++.+.+.|+|.|.+ +|+.+ ....+.++++-......+.+..+.... .+.++.+... +|||.+--+.
T Consensus 14 ~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~--~~~~~~~~~~gadgv~vh~~~-- 89 (210)
T TIGR01163 14 GEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENP--DRYIEDFAEAGADIITVHPEA-- 89 (210)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCH--HHHHHHHHHcCCCEEEEccCC--
Confidence 46678888999999999 47644 444444444433222233344566543 3456666655 6998884211
Q ss_pred ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEee
Q psy6272 315 VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVL 379 (547)
Q Consensus 315 ~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmL 379 (547)
.+. ....+..++++|..+++... ..|. .+....+..++|.+++
T Consensus 90 ----~~~----~~~~~~~~~~~g~~~~~~~~---~~t~-----------~e~~~~~~~~~d~i~~ 132 (210)
T TIGR01163 90 ----SEH----IHRLLQLIKDLGAKAGIVLN---PATP-----------LEFLEYVLPDVDLVLL 132 (210)
T ss_pred ----chh----HHHHHHHHHHcCCcEEEEEC---CCCC-----------HHHHHHHHhhCCEEEE
Confidence 111 14466888899988777422 1122 2224556678999887
No 113
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=85.86 E-value=18 Score=39.46 Aligned_cols=114 Identities=14% Similarity=0.183 Sum_probs=72.5
Q ss_pred HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcC-Cccc-ccCChHHH
Q psy6272 245 VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNR-IQLA-VATSVEVT 322 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIar-gDLg-~e~~~e~v 322 (547)
++.+.++|+|++.+..--+.+.+.++.+.+.+.|..+.+ -.+.....++.+.++....|.|.+.+ -|-+ ..-+++++
T Consensus 243 v~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~GikvgV-D~lnp~tp~e~i~~l~~~vD~Vllht~vdp~~~~~~~~kI 321 (391)
T PRK13307 243 ARMAADATADAVVISGLAPISTIEKAIHEAQKTGIYSIL-DMLNVEDPVKLLESLKVKPDVVELHRGIDEEGTEHAWGNI 321 (391)
T ss_pred HHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEE-EEcCCCCHHHHHHHhhCCCCEEEEccccCCCcccchHHHH
Confidence 667889999999999877777788888888877644433 03333345567777766689888886 3322 22222222
Q ss_pred HHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 323 FLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 323 ~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
..+.+. ..+.++.++..+= . .++..++..|+|.+.+.
T Consensus 322 ~~ikk~------~~~~~I~VdGGI~-------~--------eti~~l~~aGADivVVG 358 (391)
T PRK13307 322 KEIKKA------GGKILVAVAGGVR-------V--------ENVEEALKAGADILVVG 358 (391)
T ss_pred HHHHHh------CCCCcEEEECCcC-------H--------HHHHHHHHcCCCEEEEe
Confidence 222211 2356777765531 2 55667788899999886
No 114
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion []. This reaction is harnessed by C4 plants to capture and concentrate carbon dioxide into the photosynthetic bundle sheath cells. It also plays a key role in the nitrogen fixation pathway in legume root nodules: here it functions in concert with glutamine, glutamate and asparagine synthetases and aspartate amido transferase, to synthesise aspartate and asparagine, the major nitrogen transport compounds in various amine-transporting plant species []. PEPCase also plays an antipleurotic role in bacteria and plant cells, supplying oxaloacetate to the TCA cycle, which requires continuous input of C4 molecules in order to replenish the intermediates removed for amino acid biosynthesis []. The C terminus of the enzyme contains the active site that includes a conserved lysine residue, involved in substrate binding, and other conserved residues important for the catalytic mechanism []. Based on sequence similarity, PEPCase enzymes can be grouped into two distinct families, one found primarily in bacteria and plants, and another found primarily in archaea.; GO: 0008964 phosphoenolpyruvate carboxylase activity, 0006099 tricarboxylic acid cycle, 0015977 carbon fixation; PDB: 1JQO_A 1QB4_A 1JQN_A 1FIY_A.
Probab=85.71 E-value=3.3 Score=49.04 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=71.0
Q ss_pred CcEEEEcccCChhhHHHHHHHHHhcCC--------CceEEEEecCHHHHhhHHHHHhhc----------------CEEEE
Q psy6272 253 VDIIIMSSVTGANSIREMRGMLEDHVD--------RVLILAKIETLLGMEYMDEIIMES----------------DGVVL 308 (547)
Q Consensus 253 ~d~I~~sfV~sa~di~~~r~~l~~~~~--------~i~IiakIEt~~av~nldeIl~~~----------------DgImI 308 (547)
+.-.++|+.+++.|+-++--++.+.|- .+.|+.-.||.+.++|.++|+..- --||+
T Consensus 364 ~~~yIISmt~~~sdvL~v~~L~k~~gl~~~~~~~~~l~vvPLFETi~DL~~a~~im~~ll~~p~yr~~l~~~~~~QeVMl 443 (794)
T PF00311_consen 364 IGRYIISMTESASDVLEVLLLAKEAGLADGGDGGCRLDVVPLFETIDDLENAPDIMEELLSNPAYRAHLKARGNRQEVML 443 (794)
T ss_dssp EEEEEECT--SCHHHHHHHHHHHCTT---SS---S---EEEEE-SHHHHHCHHHHHHHHCCSHHHHHHCTT---EEEEEE
T ss_pred HHHheeeCCCChHHHHHHHHHHHHhCCCcccccccccCCCCCCCCHHHHHhHHHHHHHHHcCHHHHHHHhcCcceEEEEe
Confidence 445789999999999999888776552 478999999999999999999872 27999
Q ss_pred cCCcccccCCh----HHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 309 NRIQLAVATSV----EVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 309 argDLg~e~~~----e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
|-.|=+=+-|+ -.+..+|+++.+.|+++|+.+.+.
T Consensus 444 GYSDS~KDgG~laa~w~ly~Aq~~L~~v~~~~gV~l~~F 482 (794)
T PF00311_consen 444 GYSDSNKDGGYLAANWALYKAQEALVAVARKHGVKLRFF 482 (794)
T ss_dssp ECCCHHHHC-HHHHHHHHHHHHHHHHHHHHCCT-EEEEE
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 99998888786 478899999999999999998764
No 115
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=85.64 E-value=11 Score=38.51 Aligned_cols=125 Identities=19% Similarity=0.210 Sum_probs=77.1
Q ss_pred CChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCE-EEE-cCCccc
Q psy6272 237 IADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDG-VVL-NRIQLA 314 (547)
Q Consensus 237 lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~Dg-ImI-argDLg 314 (547)
+...-...++.+.+.|+|+|+++.. ..++..++.+.+.+.|-....+..=.| ..+.+.+|++.+|| |++ ++...+
T Consensus 100 ~~~G~e~f~~~~~~aGvdgviipDl-p~ee~~~~~~~~~~~gl~~i~lv~P~T--~~eri~~i~~~~~gfiy~vs~~G~T 176 (256)
T TIGR00262 100 FRKGVEEFYAKCKEVGVDGVLVADL-PLEESGDLVEAAKKHGVKPIFLVAPNA--DDERLKQIAEKSQGFVYLVSRAGVT 176 (256)
T ss_pred hhhhHHHHHHHHHHcCCCEEEECCC-ChHHHHHHHHHHHHCCCcEEEEECCCC--CHHHHHHHHHhCCCCEEEEECCCCC
Confidence 3334455688899999999999976 447788888888877765443333233 36788899999983 333 442222
Q ss_pred ccCChHHHHHHHHHHHHHHHH-cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 315 VATSVEVTFLAQKMIAARCNK-QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 315 ~e~~~e~v~~~qk~ii~~c~~-~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
-+- ..+..-....++..++ .++|+++...+ -| - .++..+...|+|+++..
T Consensus 177 G~~--~~~~~~~~~~i~~lr~~~~~pi~vgfGI---~~---~--------e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 177 GAR--NRAASALNELVKRLKAYSAKPVLVGFGI---SK---P--------EQVKQAIDAGADGVIVG 227 (256)
T ss_pred CCc--ccCChhHHHHHHHHHhhcCCCEEEeCCC---CC---H--------HHHHHHHHcCCCEEEEC
Confidence 110 0111112233444444 37788876542 11 1 56777888899999997
No 116
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=85.60 E-value=27 Score=36.06 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=74.8
Q ss_pred HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCCh-HHH
Q psy6272 244 VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSV-EVT 322 (547)
Q Consensus 244 di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~-e~v 322 (547)
-++.+.+.|+|++++|=.- .++-..+++.+.+.| +..|.-|--...-+.+..|.+.++|.+=.-+=.|+ .|. ..+
T Consensus 107 F~~~~~~aGvdGlIipDLP-~ee~~~~~~~~~~~g--l~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~Gv-TG~~~~~ 182 (259)
T PF00290_consen 107 FFKEAKEAGVDGLIIPDLP-PEESEELREAAKKHG--LDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGV-TGSRTEL 182 (259)
T ss_dssp HHHHHHHHTEEEEEETTSB-GGGHHHHHHHHHHTT---EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSS-SSTTSSC
T ss_pred HHHHHHHcCCCEEEEcCCC-hHHHHHHHHHHHHcC--CeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCC-CCCcccc
Confidence 4677888999999999764 466778888887665 34444443446677899999998877654344444 222 234
Q ss_pred HHHHHHHHHHHHHc-CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 323 FLAQKMIAARCNKQ-GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 323 ~~~qk~ii~~c~~~-gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+.-.+..++..+++ ++|+.+.=.+ -++ .++.... .|+|+++..
T Consensus 183 ~~~l~~~i~~ik~~~~~Pv~vGFGI---~~~-----------e~~~~~~-~~aDGvIVG 226 (259)
T PF00290_consen 183 PDELKEFIKRIKKHTDLPVAVGFGI---STP-----------EQAKKLA-AGADGVIVG 226 (259)
T ss_dssp HHHHHHHHHHHHHTTSS-EEEESSS----SH-----------HHHHHHH-TTSSEEEES
T ss_pred hHHHHHHHHHHHhhcCcceEEecCC---CCH-----------HHHHHHH-ccCCEEEEC
Confidence 44445566777765 5998886442 222 4445544 999999998
No 117
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=85.41 E-value=25 Score=38.37 Aligned_cols=151 Identities=13% Similarity=0.163 Sum_probs=89.3
Q ss_pred CChhhHHHHH-HHHHcCCcEEEEcc----c-----------CChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHH
Q psy6272 237 IADRDKHVVD-LIVREAVDIIIMSS----V-----------TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEII 300 (547)
Q Consensus 237 lt~~D~~di~-~~~~~g~d~I~~sf----V-----------~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl 300 (547)
.+..|..++. ..-+.|+|+|-+.+ . ++++-++++-+.+.+. .++.+++||= + -+.++.+++
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~-~~iPv~vKLs-P-n~t~i~~ia 200 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAK-ATVPVWAKMT-P-NITDITQPA 200 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHh-hcCceEEEeC-C-ChhhHHHHH
Confidence 3556665554 55567899988765 2 3444555554444332 3589999995 2 234566666
Q ss_pred hh-----cCEEEEc-----CCccccc-------------CC----hHHHHHHHHHHHHHHHHc------CCcEEEEcCCC
Q psy6272 301 ME-----SDGVVLN-----RIQLAVA-------------TS----VEVTFLAQKMIAARCNKQ------GKPFLVVGDIL 347 (547)
Q Consensus 301 ~~-----~DgImIa-----rgDLg~e-------------~~----~e~v~~~qk~ii~~c~~~------gKPvi~aTq~L 347 (547)
+. +|||.+- +-++-++ .| ..--+.+...+-+.+++. +.|++-.+.+-
T Consensus 201 ~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~ 280 (385)
T PLN02495 201 RVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVE 280 (385)
T ss_pred HHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCC
Confidence 64 4877542 1111001 11 112234444333333332 58888877743
Q ss_pred CCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhh
Q psy6272 348 PDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWE 405 (547)
Q Consensus 348 e~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~ 405 (547)
.. .|++.+++.|||+|.+. .-...+--+...+|+++.++.+..
T Consensus 281 ------s~--------~Da~e~i~aGAs~VQv~-Ta~~~~Gp~vi~~i~~~L~~~m~~ 323 (385)
T PLN02495 281 ------TG--------GDAAEFILLGADTVQVC-TGVMMHGYPLVKNLCAELQDFMKK 323 (385)
T ss_pred ------CH--------HHHHHHHHhCCCceeEe-eeeeecCcHHHHHHHHHHHHHHHH
Confidence 35 89999999999999998 444346667777888888775543
No 118
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=85.17 E-value=1.8 Score=46.53 Aligned_cols=51 Identities=18% Similarity=0.387 Sum_probs=43.3
Q ss_pred CCceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHH
Q psy6272 53 NLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLA 104 (547)
Q Consensus 53 r~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a 104 (547)
.+-.+-+.+|+..++.+.++.|+++|+|++=|. |||..+...+ +++++|+.
T Consensus 95 ~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~-~ik~ik~~ 146 (352)
T PF00478_consen 95 GRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHSEHVID-MIKKIKKK 146 (352)
T ss_dssp SCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHH-HHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccHHHHHH-HHHHHHHh
Confidence 356678888999999999999999999999999 9999888877 87777763
No 119
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=85.06 E-value=27 Score=36.34 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=72.6
Q ss_pred CCCChhhHHHH--------HHHHHcCCcEEEEccc-------------CChhh----------------HHHHHHHHHhc
Q psy6272 235 PVIADRDKHVV--------DLIVREAVDIIIMSSV-------------TGANS----------------IREMRGMLEDH 277 (547)
Q Consensus 235 p~lt~~D~~di--------~~~~~~g~d~I~~sfV-------------~sa~d----------------i~~~r~~l~~~ 277 (547)
..||..|++.+ +.+.+.|+|+|=+..- +...| ++++|+. .
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~---~ 205 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREA---V 205 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHH---c
Confidence 46788887776 4778899999877543 22222 2333332 3
Q ss_pred CCCceEEEEecCH----------HHHhhHHHHHhh-cCEEEEcCCcccccCCh----HHHHHHHHHHHHH-HHHcCCcEE
Q psy6272 278 VDRVLILAKIETL----------LGMEYMDEIIME-SDGVVLNRIQLAVATSV----EVTFLAQKMIAAR-CNKQGKPFL 341 (547)
Q Consensus 278 ~~~i~IiakIEt~----------~av~nldeIl~~-~DgImIargDLg~e~~~----e~v~~~qk~ii~~-c~~~gKPvi 341 (547)
+.+..|..||--. ++++-+..+.+. .|.|-+..|+..-.... ..-.......++. .+..++|++
T Consensus 206 g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi 285 (327)
T cd02803 206 GPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPVI 285 (327)
T ss_pred CCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCEE
Confidence 5678888888632 222223333333 58998887765321110 0000111112222 233589999
Q ss_pred EEcCCCCCCCcccccccCccchhhHHHHHHh-CccEEeeC
Q psy6272 342 VVGDILPDHNVEEYSDVSIGDMNDVNSIVQD-GADVVVLT 380 (547)
Q Consensus 342 ~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~-g~D~vmLs 380 (547)
....+- .. .|+..++.. |+|.|++.
T Consensus 286 ~~Ggi~------t~--------~~a~~~l~~g~aD~V~ig 311 (327)
T cd02803 286 AVGGIR------DP--------EVAEEILAEGKADLVALG 311 (327)
T ss_pred EeCCCC------CH--------HHHHHHHHCCCCCeeeec
Confidence 876643 12 566778887 79999998
No 120
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=84.35 E-value=8.9 Score=39.17 Aligned_cols=158 Identities=20% Similarity=0.293 Sum_probs=88.2
Q ss_pred CcEEEEcCCCC---CC----CcccccccCccchhhHHHHHHhCccEEeeCCcchHH--------HHHHHHHHHHHHhhhh
Q psy6272 338 KPFLVVGDILP---DH----NVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH--------HRVDILKEILKKTESV 402 (547)
Q Consensus 338 KPvi~aTq~Le---~P----traE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~--------eaV~~m~~I~~~aE~~ 402 (547)
||+|--.+++- .| +..|++|. -+.|....-.-|+|++|+. ..--. ++|..|..|.++.-..
T Consensus 8 k~vIGvvHL~PLPGsp~~~~~~~~vid~---A~~dA~~leegG~DavivE-N~gD~Pf~k~v~~~tvaaMa~iv~~v~r~ 83 (263)
T COG0434 8 KPVIGVVHLLPLPGSPYDAGSLEAVIDR---AVRDAAALEEGGVDAVIVE-NYGDAPFLKDVGPETVAAMAVIVREVVRE 83 (263)
T ss_pred CceEEEEecCCCCCCccccCCHHHHHHH---HHHHHHHHHhCCCcEEEEe-ccCCCCCCCCCChHHHHHHHHHHHHHHHh
Confidence 57887667666 44 22244332 2345556667799999996 33222 9999999999888654
Q ss_pred hhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhcCCcEEE-------EEcCCch---HHHHHHhcCCCCCEEEEeCchh
Q psy6272 403 LWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAII-------VITCSGY---SAKLVSKYRPQCPILAVSSLGY 472 (547)
Q Consensus 403 ~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~a~aIv-------v~T~sG~---tA~~isk~RP~~pIiavt~~~~ 472 (547)
..-. .-.+..--=+.+|..+|...+|+-|= .+|..|- -|..+.|||++.+ ..
T Consensus 84 v~iP-----------vGvNVLrNd~vaA~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~-----~~-- 145 (263)
T COG0434 84 VSIP-----------VGVNVLRNDAVAALAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG-----SR-- 145 (263)
T ss_pred cccc-----------ceeeeeccccHHHHHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc-----CC--
Confidence 2211 00111111234566677777887664 4666653 4677788887765 11
Q ss_pred ccccccccccceEEeecCCCCCCCCCCHHHHHHHHHHHHHHcCCCCCCCeEEEEecccCCC
Q psy6272 473 VCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKGA 533 (547)
Q Consensus 473 ~ar~l~l~~GV~p~~~~~~~~~~~~~d~d~~I~~a~~~~k~~g~~~~Gd~vvvv~g~~~g~ 533 (547)
..++--|++=+-.+.. .. -+..+.+-..++|.. |-| ++|||..|+
T Consensus 146 ----v~vlADv~VKHa~~l~----~~----~~~~~v~dtver~~a---DaV-I~tG~~TG~ 190 (263)
T COG0434 146 ----VKVLADVHVKHAVHLG----NR----SLEEAVKDTVERGLA---DAV-IVTGSRTGS 190 (263)
T ss_pred ----cEEEeecchhcccccC----Cc----CHHHHHHHHHHccCC---CEE-EEecccCCC
Confidence 1111111111111000 01 245566667778876 666 688998773
No 121
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=84.28 E-value=15 Score=39.25 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=70.2
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChH
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVE 320 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e 320 (547)
-.+.|....+.|+|.|-+. |.+.++++.+...-. +.++.++|-|- ..--..+.++..-+|.|=|.||.+|-
T Consensus 36 tv~QI~~L~~aGceiVRva-vp~~~~A~al~~I~~--~~~iPlVADIH-Fd~~lAl~a~~~g~dkiRINPGNig~----- 106 (346)
T TIGR00612 36 TVAQIRALEEAGCDIVRVT-VPDRESAAAFEAIKE--GTNVPLVADIH-FDYRLAALAMAKGVAKVRINPGNIGF----- 106 (346)
T ss_pred HHHHHHHHHHcCCCEEEEc-CCCHHHHHhHHHHHh--CCCCCEEEeeC-CCcHHHHHHHHhccCeEEECCCCCCC-----
Confidence 3455667778999999887 678888888877665 46799999884 33333455666678999999999985
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 321 VTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 321 ~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
..--+.++++|+++|+|+=+..
T Consensus 107 --~e~v~~vv~~ak~~~ipIRIGV 128 (346)
T TIGR00612 107 --RERVRDVVEKARDHGKAMRIGV 128 (346)
T ss_pred --HHHHHHHHHHHHHCCCCEEEec
Confidence 3445678999999999976543
No 122
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=84.17 E-value=20 Score=37.08 Aligned_cols=132 Identities=19% Similarity=0.267 Sum_probs=68.1
Q ss_pred cCCCCCCh-hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHh-hHHHHHhhc------
Q psy6272 232 FNLPVIAD-RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGME-YMDEIIMES------ 303 (547)
Q Consensus 232 ~~lp~lt~-~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~-nldeIl~~~------ 303 (547)
+.+|.+|+ .|...++++.+. +|++-++- ++..+...++.. +. ....|+.| .|.. +++|++.++
T Consensus 90 ~Gl~~~te~~d~~~~~~l~~~-vd~~kIga-~~~~n~~LL~~~-a~--~gkPV~lk----~G~~~s~~e~~~A~e~i~~~ 160 (266)
T PRK13398 90 YNLPVVTEVMDTRDVEEVADY-ADMLQIGS-RNMQNFELLKEV-GK--TKKPILLK----RGMSATLEEWLYAAEYIMSE 160 (266)
T ss_pred cCCCEEEeeCChhhHHHHHHh-CCEEEECc-ccccCHHHHHHH-hc--CCCcEEEe----CCCCCCHHHHHHHHHHHHhc
Confidence 34444444 255566666666 66666652 333333333332 32 23455554 2333 444444432
Q ss_pred ---CEEEEcCCcccc-cCChHHHHHHHHHHHHHH-HHcCCcEEE-EcCCCCCCCcccccccCccchhhHHHHHHhCccEE
Q psy6272 304 ---DGVVLNRIQLAV-ATSVEVTFLAQKMIAARC-NKQGKPFLV-VGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVV 377 (547)
Q Consensus 304 ---DgImIargDLg~-e~~~e~v~~~qk~ii~~c-~~~gKPvi~-aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~v 377 (547)
+.+++=||--+. .++.+.+... .+..- +..+.||++ +++- ..+.|. -......|+..|+|++
T Consensus 161 Gn~~i~L~~rG~~t~~~Y~~~~vdl~---~i~~lk~~~~~pV~~D~sHs---~G~~~~------v~~~~~aAva~Ga~Gl 228 (266)
T PRK13398 161 GNENVVLCERGIRTFETYTRNTLDLA---AVAVIKELSHLPIIVDPSHA---TGRREL------VIPMAKAAIAAGADGL 228 (266)
T ss_pred CCCeEEEEECCCCCCCCCCHHHHHHH---HHHHHHhccCCCEEEeCCCc---ccchhh------HHHHHHHHHHcCCCEE
Confidence 688888886444 3443333322 22223 345999998 4441 111111 1244568899999999
Q ss_pred eeCCcch
Q psy6272 378 VLTQSEQ 384 (547)
Q Consensus 378 mLsk~Et 384 (547)
|+-|..|
T Consensus 229 ~iE~H~~ 235 (266)
T PRK13398 229 MIEVHPE 235 (266)
T ss_pred EEeccCC
Confidence 9964433
No 123
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=83.81 E-value=26 Score=38.95 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=71.8
Q ss_pred hHHHHHHHHHcCCcEEEEccc-C-ChhhHHHHHHH-H--HhcC---CCceEEEEecCHHHHhh---------HHHHHhh-
Q psy6272 241 DKHVVDLIVREAVDIIIMSSV-T-GANSIREMRGM-L--EDHV---DRVLILAKIETLLGMEY---------MDEIIME- 302 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV-~-sa~di~~~r~~-l--~~~~---~~i~IiakIEt~~av~n---------ldeIl~~- 302 (547)
+.+.++..+++|+..|..|.- . ++. +...|.. + ...+ ....|++|+-+++-... ++.+.+.
T Consensus 89 e~~~v~l~l~~~V~~veasa~~~~~p~-~v~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G 167 (444)
T TIGR02814 89 EWGLVDLLLRHGVRIVEASAFMQLTPA-LVRYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEG 167 (444)
T ss_pred HHHHHHHHHHcCCCEEEeccccCCCcc-hhhhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcC
Confidence 455678889999999888732 2 222 2222211 1 1001 12489999887775544 2222222
Q ss_pred ---------------cCEEEEcCCcccccCChHHHHHHHHHHHHHHHH------c--CCcEEEEcCCCCCCCcccccccC
Q psy6272 303 ---------------SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNK------Q--GKPFLVVGDILPDHNVEEYSDVS 359 (547)
Q Consensus 303 ---------------~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~------~--gKPvi~aTq~Le~PtraE~~~~~ 359 (547)
+|.|.+. +|=|-+.+---....--.|++.+.+ + .+|||.|..+- | -
T Consensus 168 ~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~---t---~---- 236 (444)
T TIGR02814 168 RITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIG---T---P---- 236 (444)
T ss_pred CCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCC---C---H----
Confidence 5888887 7777665532122222233322222 2 46799998743 1 2
Q ss_pred ccchhhHHHHHHhCccEEeeC
Q psy6272 360 IGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 360 ~~~~~Dv~nav~~g~D~vmLs 380 (547)
.+++.+...|||+|.+.
T Consensus 237 ----~~vaAAlaLGAdgV~~G 253 (444)
T TIGR02814 237 ----EAAAAAFMLGADFIVTG 253 (444)
T ss_pred ----HHHHHHHHcCCcEEEec
Confidence 77889999999999997
No 124
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=83.56 E-value=52 Score=33.11 Aligned_cols=74 Identities=11% Similarity=0.192 Sum_probs=55.5
Q ss_pred cCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEE
Q psy6272 232 FNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVL 308 (547)
Q Consensus 232 ~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImI 308 (547)
++.--+.+.=...+..-.+.|+|.|.+-+ ++..++.++-+++.+.|....+.-+=+| -++.+..++...|.|+|
T Consensus 65 ~dvHLMv~~P~~~i~~~~~~gad~I~~H~-Ea~~~~~~~l~~Ir~~g~k~GlalnP~T--~~~~i~~~l~~vD~Vlv 138 (223)
T PRK08745 65 IDVHLMVEPVDRIVPDFADAGATTISFHP-EASRHVHRTIQLIKSHGCQAGLVLNPAT--PVDILDWVLPELDLVLV 138 (223)
T ss_pred EEEEeccCCHHHHHHHHHHhCCCEEEEcc-cCcccHHHHHHHHHHCCCceeEEeCCCC--CHHHHHHHHhhcCEEEE
Confidence 33333444444567777889999888764 5556787888888888888888888777 67788999999998876
No 125
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=83.29 E-value=11 Score=43.22 Aligned_cols=123 Identities=9% Similarity=0.022 Sum_probs=83.6
Q ss_pred eCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEE--cccCChhhHHHHHHHHHhcCCCceEEEEec--CHHHHh
Q psy6272 219 LMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIM--SSVTGANSIREMRGMLEDHVDRVLILAKIE--TLLGME 294 (547)
Q Consensus 219 L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~--sfV~sa~di~~~r~~l~~~~~~i~IiakIE--t~~av~ 294 (547)
++++.+|.+-.-.-.-..=++.-.+.|....+.|+|.|-+ |-.+.|+.+..+++.+.+.|.++.++|-|= -..|+.
T Consensus 21 iGg~~PI~vQSMt~t~T~D~~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~ 100 (611)
T PRK02048 21 LGGPNPIRIQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQGYMVPLVADVHFNPKVADV 100 (611)
T ss_pred ECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHH
Confidence 5666666654333222222344566677888999999765 445556666666777777788999999763 333433
Q ss_pred hHHHHHhhcCEEEEcCCccccc---------------CChHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 295 YMDEIIMESDGVVLNRIQLAVA---------------TSVEVTFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 295 nldeIl~~~DgImIargDLg~e---------------~~~e~v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
.+ +.+|.|=|.||.++-. -.++++..--+.++.+|+++|+|+=+.+.
T Consensus 101 a~----~~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN 162 (611)
T PRK02048 101 AA----QYAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVN 162 (611)
T ss_pred HH----HhhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC
Confidence 32 3389999999999863 12245666667899999999999877665
No 126
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=83.14 E-value=14 Score=39.63 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHhcCCCceEEEE-ecCHHHHhhHHHHHhh-cCEEEEcCCcccccC--C---hHHHHHHHHHHHHHHHH
Q psy6272 263 GANSIREMRGMLEDHVDRVLILAK-IETLLGMEYMDEIIME-SDGVVLNRIQLAVAT--S---VEVTFLAQKMIAARCNK 335 (547)
Q Consensus 263 sa~di~~~r~~l~~~~~~i~Iiak-IEt~~av~nldeIl~~-~DgImIargDLg~e~--~---~e~v~~~qk~ii~~c~~ 335 (547)
+.++++.+++.. +..|++| |-++ +......+. +|+|.+. +--|..+ + ++.++++ +++
T Consensus 209 ~~~~l~~lr~~~-----~~PvivKgv~~~---~dA~~a~~~G~d~I~vs-nhGGr~ld~~~~~~~~l~~i-------~~a 272 (351)
T cd04737 209 SPADIEFIAKIS-----GLPVIVKGIQSP---EDADVAINAGADGIWVS-NHGGRQLDGGPASFDSLPEI-------AEA 272 (351)
T ss_pred CHHHHHHHHHHh-----CCcEEEecCCCH---HHHHHHHHcCCCEEEEe-CCCCccCCCCchHHHHHHHH-------HHH
Confidence 778888888765 3688889 3222 222222223 6999983 1112221 1 2223222 222
Q ss_pred c--CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchH
Q psy6272 336 Q--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQA 385 (547)
Q Consensus 336 ~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta 385 (547)
. ..|+|....+- .- .|+..++..|||+||+. ....
T Consensus 273 ~~~~i~vi~dGGIr------~g--------~Di~kaLalGA~~V~iG-r~~l 309 (351)
T cd04737 273 VNHRVPIIFDSGVR------RG--------EHVFKALASGADAVAVG-RPVL 309 (351)
T ss_pred hCCCCeEEEECCCC------CH--------HHHHHHHHcCCCEEEEC-HHHH
Confidence 3 48999977743 35 99999999999999998 5433
No 127
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=83.01 E-value=7.2 Score=38.22 Aligned_cols=52 Identities=13% Similarity=0.294 Sum_probs=38.9
Q ss_pred HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhh
Q psy6272 244 VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEY 295 (547)
Q Consensus 244 di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~n 295 (547)
.++.+.+.|+|+|.+..--..+.+..+.+.+.+.|..+.+..+-++..+++.
T Consensus 72 ~~~~~~~~gad~vtvh~e~g~~~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~ 123 (215)
T PRK13813 72 ICEAVFEAGAWGIIVHGFTGRDSLKAVVEAAAESGGKVFVVVEMSHPGALEF 123 (215)
T ss_pred HHHHHHhCCCCEEEEcCcCCHHHHHHHHHHHHhcCCeEEEEEeCCCCCCCCC
Confidence 3467788999999999875556688888888877777777777776655553
No 128
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=82.70 E-value=45 Score=35.30 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=25.8
Q ss_pred CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 337 GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 337 gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
..|+|.++.+- .. .|++.++..|||+++++
T Consensus 255 ~ipIiasGGIr------~~--------~dv~kal~lGAd~V~i~ 284 (326)
T cd02811 255 DLPLIASGGIR------NG--------LDIAKALALGADLVGMA 284 (326)
T ss_pred CCcEEEECCCC------CH--------HHHHHHHHhCCCEEEEc
Confidence 79999987743 34 89999999999999998
No 129
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=82.17 E-value=51 Score=34.18 Aligned_cols=193 Identities=12% Similarity=0.120 Sum_probs=106.8
Q ss_pred CCChhhHHHHHHHH-Hc-CCcEEEEc-ccCChhhHHHHHHHHHhcC-----CCceEEEEecCHHHHhhHHHHHhh-cCEE
Q psy6272 236 VIADRDKHVVDLIV-RE-AVDIIIMS-SVTGANSIREMRGMLEDHV-----DRVLILAKIETLLGMEYMDEIIME-SDGV 306 (547)
Q Consensus 236 ~lt~~D~~di~~~~-~~-g~d~I~~s-fV~sa~di~~~r~~l~~~~-----~~i~IiakIEt~~av~nldeIl~~-~DgI 306 (547)
.+|.+++..|...+ +. |++.|=+. |.-++++.+.++++..... .+..+++-+.+..+++. .++. .|.|
T Consensus 15 ~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---A~~~g~~~i 91 (280)
T cd07945 15 SFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFVDGDKSVDW---IKSAGAKVL 91 (280)
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccccCcEEEEecCcHHHHHH---HHHCCCCEE
Confidence 35667777777664 55 99999885 5589977777777664221 14667666665554443 3333 4544
Q ss_pred EEc--CCccccc----CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH-HHHHhCccEEee
Q psy6272 307 VLN--RIQLAVA----TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN-SIVQDGADVVVL 379 (547)
Q Consensus 307 mIa--rgDLg~e----~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~-nav~~g~D~vmL 379 (547)
-+. =.|.-.. ...++.....+++++.|+.+|..|.+.-..+-.|.|.+. .++-+++ .+...|+|.+-|
T Consensus 92 ~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~-----~~~~~~~~~~~~~G~~~i~l 166 (280)
T cd07945 92 NLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSP-----DYVFQLVDFLSDLPIKRIML 166 (280)
T ss_pred EEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCH-----HHHHHHHHHHHHcCCCEEEe
Confidence 333 2222111 234666666778999999999887764332213444333 2335555 455679999999
Q ss_pred CCcchHH-----HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhcCCcEEEEEcCCchH
Q psy6272 380 TQSEQAH-----HRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYS 451 (547)
Q Consensus 380 sk~Eta~-----eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~a~aIvv~T~sG~t 451 (547)
. +|.= +.-+.+..+.++....... -+++ . .--+|.+-.-+|.+.+|+ .|=-|-.|-.
T Consensus 167 ~--DT~G~~~P~~v~~l~~~l~~~~~~~~i~-~H~H---------n--d~Gla~AN~laA~~aGa~-~vd~s~~GlG 228 (280)
T cd07945 167 P--DTLGILSPFETYTYISDMVKRYPNLHFD-FHAH---------N--DYDLAVANVLAAVKAGIK-GLHTTVNGLG 228 (280)
T ss_pred c--CCCCCCCHHHHHHHHHHHHhhCCCCeEE-EEeC---------C--CCCHHHHHHHHHHHhCCC-EEEEeccccc
Confidence 7 5554 4444444443322110000 0010 1 123555666667777888 3544555443
No 130
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=82.13 E-value=32 Score=33.67 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCcEEEEcccCC-hhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCChH
Q psy6272 243 HVVDLIVREAVDIIIMSSVTG-ANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSVE 320 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~sfV~s-a~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~~e 320 (547)
..++.+.+.|+|+|.+.-..- .++++.+.+.....| +..++-+-+.+ .+.++.+. +|.+.+..-|.... +.
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g--~~~~v~v~~~~---e~~~~~~~g~~~i~~t~~~~~~~-~~- 157 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDDEQLKELYELARELG--MEVLVEVHDEE---ELERALALGAKIIGINNRDLKTF-EV- 157 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcC--CeEEEEECCHH---HHHHHHHcCCCEEEEeCCCcccc-Cc-
Confidence 358899999999998643222 244444444443333 33344444443 34444444 68888886664322 21
Q ss_pred HHHHHHHHHHHHHHH--cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 321 VTFLAQKMIAARCNK--QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 321 ~v~~~qk~ii~~c~~--~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.+ ..+.+.++. .++|++....+- .. .|+..+...|+|++++.
T Consensus 158 ~~----~~~~~l~~~~~~~~pvia~gGI~------s~--------edi~~~~~~Ga~gvivG 201 (217)
T cd00331 158 DL----NTTERLAPLIPKDVILVSESGIS------TP--------EDVKRLAEAGADAVLIG 201 (217)
T ss_pred CH----HHHHHHHHhCCCCCEEEEEcCCC------CH--------HHHHHHHHcCCCEEEEC
Confidence 12 112222333 468998766632 12 67788888899999997
No 131
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=82.01 E-value=24 Score=36.48 Aligned_cols=147 Identities=16% Similarity=0.216 Sum_probs=86.0
Q ss_pred hhhHHHHHHHHHcCCcEEEEcc----cC---ChhhHHH----HHHHHHhcCCCceEEEEecC----HHHHhhHHHHHhh-
Q psy6272 239 DRDKHVVDLIVREAVDIIIMSS----VT---GANSIRE----MRGMLEDHVDRVLILAKIET----LLGMEYMDEIIME- 302 (547)
Q Consensus 239 ~~D~~di~~~~~~g~d~I~~sf----V~---sa~di~~----~r~~l~~~~~~i~IiakIEt----~~av~nldeIl~~- 302 (547)
.+|.......++.|+|++-+.+ +. ...+..+ +.+.+.+ -.++.+++|+=- ..-+.-+.+..+.
T Consensus 111 ~~d~~~~a~~~~~~ad~lElN~ScPn~~~~~~~~~~~~~~~~i~~~v~~-~~~~Pv~vKL~p~~~~~~~~~~~~~~~~~g 189 (295)
T PF01180_consen 111 IEDWAELAKRLEAGADALELNLSCPNVPGGRPFGQDPELVAEIVRAVRE-AVDIPVFVKLSPNFTDIEPFAIAAELAADG 189 (295)
T ss_dssp HHHHHHHHHHHHHHCSEEEEESTSTTSTTSGGGGGHHHHHHHHHHHHHH-HHSSEEEEEE-STSSCHHHHHHHHHHHTHT
T ss_pred HHHHHHHHHHhcCcCCceEEEeeccCCCCccccccCHHHHHHHHHHHHh-ccCCCEEEEecCCCCchHHHHHHHHhhccc
Confidence 3444444445558899987753 21 1122222 2222222 136889999843 1122222222222
Q ss_pred cCEEE----EcCCc-ccccC-------------ChHHHHHHHHHHHHHHHHcC--CcEEEEcCCCCCCCcccccccCccc
Q psy6272 303 SDGVV----LNRIQ-LAVAT-------------SVEVTFLAQKMIAARCNKQG--KPFLVVGDILPDHNVEEYSDVSIGD 362 (547)
Q Consensus 303 ~DgIm----IargD-Lg~e~-------------~~e~v~~~qk~ii~~c~~~g--KPvi~aTq~Le~PtraE~~~~~~~~ 362 (547)
+|||. +..++ +-.+. |..--+.+.+.+-..+++.+ .|+|-.+.+. ..
T Consensus 190 ~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~------s~------- 256 (295)
T PF01180_consen 190 ADGIVAINTFGQGDAIDLETRRPVLGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGVGGIH------SG------- 256 (295)
T ss_dssp ECEEEE---EEEEE-EETTTTEESSSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEESS--------SH-------
T ss_pred eeEEEEecCccCcccccchhcceeeccccCCcCchhhhhHHHHHHHHHHhccccceEEEEeCCcC------CH-------
Confidence 58887 55554 22221 22455677777777777777 9999888854 24
Q ss_pred hhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhh
Q psy6272 363 MNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTES 401 (547)
Q Consensus 363 ~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~ 401 (547)
.|+..+++.|||+|.+. +-...+-.....+|+++.++
T Consensus 257 -~da~e~l~aGA~~Vqv~-Sal~~~Gp~~~~~i~~~L~~ 293 (295)
T PF01180_consen 257 -EDAIEFLMAGASAVQVC-SALIYRGPGVIRRINRELEE 293 (295)
T ss_dssp -HHHHHHHHHTESEEEES-HHHHHHGTTHHHHHHHHHHH
T ss_pred -HHHHHHHHhCCCHheec-hhhhhcCcHHHHHHHHHHHh
Confidence 89999999999999998 44334666677777777765
No 132
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=81.97 E-value=29 Score=36.57 Aligned_cols=47 Identities=17% Similarity=0.079 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhc-----CCcEEEEEcCCchHHHHHHhc----CCCCCEEEEeCch
Q psy6272 425 SIVIACVNAALKC-----QAVAIIVITCSGYSAKLVSKY----RPQCPILAVSSLG 471 (547)
Q Consensus 425 ~ia~aav~~a~~~-----~a~aIvv~T~sG~tA~~isk~----RP~~pIiavt~~~ 471 (547)
.....+.|+..++ ..++||+.+-||.|+--++++ .|.+.|++|.+..
T Consensus 166 g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 166 GYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 3444455777665 478999999999998866654 5999999999965
No 133
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion]
Probab=81.95 E-value=4.9 Score=47.32 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=90.5
Q ss_pred eCCCceeeeCCCCcCCCCCChhhHHHHHHHHH----cCCc---EEEEcccCChhhHHHHHHHHHhcCC------CceEEE
Q psy6272 219 LMDNQLVTVPRVTFNLPVIADRDKHVVDLIVR----EAVD---IIIMSSVTGANSIREMRGMLEDHVD------RVLILA 285 (547)
Q Consensus 219 L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~----~g~d---~I~~sfV~sa~di~~~r~~l~~~~~------~i~Iia 285 (547)
|.++..+--|+... ...|.+.+.-++.+.+ .|.| -.++|+.+++.|+-++.=++++.|- ++.|+.
T Consensus 447 L~s~RPL~p~~~~~--Se~t~~~L~t~r~a~~~~~~~G~~~i~~yIISma~s~SDvLev~lLlKE~Gl~~~~~~~v~VvP 524 (910)
T COG2352 447 LSSRRPLLPPFWQP--SEETREELATFRVAAEAKDEFGEDAIGAYIISMAESVSDVLEVLLLLKEAGLVDPERARVPVVP 524 (910)
T ss_pred hcCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCHHHHHHHHHHHHHhCCCCccCCcccccc
Confidence 45555555555332 3456665555554433 2333 2579999999999999999988874 488999
Q ss_pred EecCHHHHhhHHHHHhhc-----------C-----EEEEcCCcccccCCh----HHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 286 KIETLLGMEYMDEIIMES-----------D-----GVVLNRIQLAVATSV----EVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 286 kIEt~~av~nldeIl~~~-----------D-----gImIargDLg~e~~~----e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
--||.+-++|-+.|+..- + -||+|-.|=.-+=|+ -.+..+|+.+++.|+++|+-.=.
T Consensus 525 LFETieDL~na~~vm~~ll~l~~yR~~l~~~~n~QEVMlGYSDSnKDgG~laa~Wa~y~Aq~aLv~~~~~~gV~Lrl 601 (910)
T COG2352 525 LFETIEDLDNAPDVMTQLLNLPLYRALLAGRGNVQEVMLGYSDSNKDGGYLAANWALYKAQLALVELCEKAGVELRL 601 (910)
T ss_pred ccccHHHHhccHHHHHHHHcChHHHHHHcCCCCceEEEecccccccccchhhhHHHHHHHHHHHHHHHHHhCceEEE
Confidence 999999999999998761 1 588888887776666 47888999999999999987644
No 134
>PRK00915 2-isopropylmalate synthase; Validated
Probab=81.87 E-value=90 Score=35.24 Aligned_cols=138 Identities=9% Similarity=0.109 Sum_probs=87.8
Q ss_pred CCChhhHHHH-HHHHHcCCcEEEEcc-cCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh---c--C--EE
Q psy6272 236 VIADRDKHVV-DLIVREAVDIIIMSS-VTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME---S--D--GV 306 (547)
Q Consensus 236 ~lt~~D~~di-~~~~~~g~d~I~~sf-V~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~---~--D--gI 306 (547)
.+|..++..| +...+.|+|.|=+-| .-++.|.+.++.+... ..+..|.+-.-.. .+.+|..++. + + .+
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~~d~~~v~~i~~~-~~~~~i~a~~r~~--~~did~a~~a~~~~~~~~v~i 98 (513)
T PRK00915 22 SLTVEEKLQIAKQLERLGVDVIEAGFPASSPGDFEAVKRIART-VKNSTVCGLARAV--KKDIDAAAEALKPAEAPRIHT 98 (513)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEcCCCCChHHHHHHHHHHhh-CCCCEEEEEccCC--HHHHHHHHHHhhcCCCCEEEE
Confidence 4666776655 456669999998866 5677888888776543 4556666554221 2334444422 2 2 46
Q ss_pred EEcCCcccc----cCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHH-HHHhCccEEeeCC
Q psy6272 307 VLNRIQLAV----ATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNS-IVQDGADVVVLTQ 381 (547)
Q Consensus 307 mIargDLg~----e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~n-av~~g~D~vmLsk 381 (547)
+++-.|+-+ -...+++.......++.|+++|.-|.+... +-+|++. .++.+++. +...|+|.+.|.
T Consensus 99 ~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~e---d~~r~d~-----~~l~~~~~~~~~~Ga~~i~l~- 169 (513)
T PRK00915 99 FIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAE---DATRTDL-----DFLCRVVEAAIDAGATTINIP- 169 (513)
T ss_pred EECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeC---CCCCCCH-----HHHHHHHHHHHHcCCCEEEEc-
Confidence 666666532 234566676777899999999999887654 6666554 22255553 455699999996
Q ss_pred cchHH
Q psy6272 382 SEQAH 386 (547)
Q Consensus 382 ~Eta~ 386 (547)
+|.=
T Consensus 170 -DTvG 173 (513)
T PRK00915 170 -DTVG 173 (513)
T ss_pred -cCCC
Confidence 6554
No 135
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=81.72 E-value=59 Score=36.54 Aligned_cols=137 Identities=9% Similarity=0.077 Sum_probs=85.6
Q ss_pred CCChhhHHHHH-HHHHcCCcEEEEcc-cCChhhHHHHHHHHHhcCCCceEEEEec-CHHHHhhHHHHHhh-----cC--E
Q psy6272 236 VIADRDKHVVD-LIVREAVDIIIMSS-VTGANSIREMRGMLEDHVDRVLILAKIE-TLLGMEYMDEIIME-----SD--G 305 (547)
Q Consensus 236 ~lt~~D~~di~-~~~~~g~d~I~~sf-V~sa~di~~~r~~l~~~~~~i~IiakIE-t~~av~nldeIl~~-----~D--g 305 (547)
.+|..++..|. ...+.|+|.|=+-| +.+..|.+.++.+.. ...+..+.+-.- ..+ .+|.-++. .+ .
T Consensus 19 ~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~d~e~v~~i~~-~~~~~~i~al~r~~~~---did~a~~al~~~~~~~v~ 94 (494)
T TIGR00973 19 SLTVEEKLQIALALERLGVDIIEAGFPVSSPGDFEAVQRIAR-TVKNPRVCGLARCVEK---DIDAAAEALKPAEKFRIH 94 (494)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHH-hCCCCEEEEEcCCCHH---hHHHHHHhccccCCCEEE
Confidence 45667766665 55569999998755 567788888877654 334455555533 233 33333332 23 3
Q ss_pred EEEcCCccccc----CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHH-HHHhCccEEeeC
Q psy6272 306 VVLNRIQLAVA----TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNS-IVQDGADVVVLT 380 (547)
Q Consensus 306 ImIargDLg~e----~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~n-av~~g~D~vmLs 380 (547)
+++.-.|+-++ ...+++......+++.|+.+|.-|.+... +.+|++. .++-+++. +...|+|.+.|.
T Consensus 95 i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~E---d~~r~d~-----~~l~~~~~~~~~~Ga~~i~l~ 166 (494)
T TIGR00973 95 TFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCE---DAGRTEI-----PFLARIVEAAINAGATTINIP 166 (494)
T ss_pred EEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcC---CCCCCCH-----HHHHHHHHHHHHcCCCEEEeC
Confidence 44444454332 23466677777899999999999888755 7777665 22244443 456699999997
Q ss_pred CcchHH
Q psy6272 381 QSEQAH 386 (547)
Q Consensus 381 k~Eta~ 386 (547)
+|.=
T Consensus 167 --DTvG 170 (494)
T TIGR00973 167 --DTVG 170 (494)
T ss_pred --CCCC
Confidence 5554
No 136
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=81.43 E-value=36 Score=33.59 Aligned_cols=119 Identities=13% Similarity=0.186 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHcCCcEEEEcc--cCChhhHHHHHHHHHhcC-CCceEEEE-----ecCH--------HHHhhHHHHHhh-
Q psy6272 240 RDKHVVDLIVREAVDIIIMSS--VTGANSIREMRGMLEDHV-DRVLILAK-----IETL--------LGMEYMDEIIME- 302 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sf--V~sa~di~~~r~~l~~~~-~~i~Iiak-----IEt~--------~av~nldeIl~~- 302 (547)
.+.++++.+++.|+|.|+++- .+++ ..+.++..+.+ +.+.+-.. +++. ..++-+....+.
T Consensus 82 ~~~ed~~~~~~~Ga~~vvlgs~~l~d~---~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g 158 (230)
T TIGR00007 82 RSLEDVEKLLDLGVDRVIIGTAAVENP---DLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELG 158 (230)
T ss_pred CCHHHHHHHHHcCCCEEEEChHHhhCH---HHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCC
Confidence 568889999999999988762 2444 44445454444 22221111 1111 111122222222
Q ss_pred cCEEEEc-CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 303 SDGVVLN-RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 303 ~DgImIa-rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+|++++. +.-=+..-|. .+..+ -..++..+.|++.+..+- .. .|+..+...|+|++|+.
T Consensus 159 ~~~ii~~~~~~~g~~~g~-~~~~i----~~i~~~~~ipvia~GGi~------~~--------~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 159 LEGIIYTDISRDGTLSGP-NFELT----KELVKAVNVPVIASGGVS------SI--------DDLIALKKLGVYGVIVG 218 (230)
T ss_pred CCEEEEEeecCCCCcCCC-CHHHH----HHHHHhCCCCEEEeCCCC------CH--------HHHHHHHHCCCCEEEEe
Confidence 5877754 2111222232 22222 222344689999987743 23 77777778899999997
No 137
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=81.42 E-value=58 Score=33.86 Aligned_cols=146 Identities=12% Similarity=0.039 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHc---CCcEEEEccc-----------CChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh---
Q psy6272 240 RDKHVVDLIVRE---AVDIIIMSSV-----------TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--- 302 (547)
Q Consensus 240 ~D~~di~~~~~~---g~d~I~~sfV-----------~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--- 302 (547)
...+..+...+. |+|+|-+.+= .+.+.+.++-+.+.+. -++.+++||=--...+++.+++..
T Consensus 104 ~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~-~~iPv~vKl~p~~~~~~~~~~a~~l~~ 182 (294)
T cd04741 104 DIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAA-YSIPVGVKTPPYTDPAQFDTLAEALNA 182 (294)
T ss_pred HHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHhc
Confidence 334445555554 6898776432 1334444444444332 358899999422222344455442
Q ss_pred ----cCEEEE----------c--CCc--cc--cc----CChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCccccc
Q psy6272 303 ----SDGVVL----------N--RIQ--LA--VA----TSVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYS 356 (547)
Q Consensus 303 ----~DgImI----------a--rgD--Lg--~e----~~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~ 356 (547)
+|||.+ . |.- |. .. -|...-+.+.+.+-...++. +.|+|-.+.+. ..
T Consensus 183 ~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~------s~- 255 (294)
T cd04741 183 FACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVL------DG- 255 (294)
T ss_pred cccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCC------CH-
Confidence 245653 1 222 11 11 11223445555555555555 38999887754 24
Q ss_pred ccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhh
Q psy6272 357 DVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTES 401 (547)
Q Consensus 357 ~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~ 401 (547)
.|+..+++.|||+||+. .-...+--....+|+++.+.
T Consensus 256 -------~da~e~l~aGA~~Vqv~-ta~~~~gp~~~~~i~~~L~~ 292 (294)
T cd04741 256 -------RGAFRMRLAGASAVQVG-TALGKEGPKVFARIEKELED 292 (294)
T ss_pred -------HHHHHHHHcCCCceeEc-hhhhhcCchHHHHHHHHHHh
Confidence 88899999999999998 33222445555666666554
No 138
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=81.31 E-value=17 Score=37.93 Aligned_cols=98 Identities=17% Similarity=0.237 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCcEEEEc-------ccCChhhHHHHHHHHHhcCCCceEEEEec--CHHHHhhHHHHHhh-cCEEEEcCC
Q psy6272 242 KHVVDLIVREAVDIIIMS-------SVTGANSIREMRGMLEDHVDRVLILAKIE--TLLGMEYMDEIIME-SDGVVLNRI 311 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~s-------fV~sa~di~~~r~~l~~~~~~i~IiakIE--t~~av~nldeIl~~-~DgImIarg 311 (547)
...+++.++.|+|+|++. .....|-.+-++...+..+.++.+|+.+- |.++++.....-+. +|++|+.+-
T Consensus 31 ~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gadav~~~pP 110 (303)
T PRK03620 31 REHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGADGILLLPP 110 (303)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCCEEEECCC
Confidence 455689999999999874 23333444444455565667788888873 22333333333322 599999887
Q ss_pred cccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 312 QLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 312 DLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
.+. ....+.+...-+.+ |.+.+.|+++-
T Consensus 111 ~y~-~~~~~~i~~~f~~v---a~~~~lpi~lY 138 (303)
T PRK03620 111 YLT-EAPQEGLAAHVEAV---CKSTDLGVIVY 138 (303)
T ss_pred CCC-CCCHHHHHHHHHHH---HHhCCCCEEEE
Confidence 654 23345566666655 44568998874
No 139
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=80.60 E-value=16 Score=37.63 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=61.3
Q ss_pred HHHHHHHHHc-CCcEEEEcc-------cCChhhHHHHHHHHHhcCCCceEEEEec---CHHHHhhHHHHHhh-cCEEEEc
Q psy6272 242 KHVVDLIVRE-AVDIIIMSS-------VTGANSIREMRGMLEDHVDRVLILAKIE---TLLGMEYMDEIIME-SDGVVLN 309 (547)
Q Consensus 242 ~~di~~~~~~-g~d~I~~sf-------V~sa~di~~~r~~l~~~~~~i~IiakIE---t~~av~nldeIl~~-~DgImIa 309 (547)
...+++.++. |+++|++.= -...|-.+-++...+..+.++.||+.+- +.++++.....-+. +|++|+.
T Consensus 24 ~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~ 103 (288)
T cd00954 24 RAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAI 103 (288)
T ss_pred HHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4557899999 999987642 2222333334445555566889999885 45556555555444 6999986
Q ss_pred CCcccccCChHHHHHHHHHHHHHHHHc-CCcEEEE
Q psy6272 310 RIQLAVATSVEVTFLAQKMIAARCNKQ-GKPFLVV 343 (547)
Q Consensus 310 rgDLg~e~~~e~v~~~qk~ii~~c~~~-gKPvi~a 343 (547)
+-...- ...+.+...-+.| |.+. +.|+++-
T Consensus 104 ~P~y~~-~~~~~i~~~~~~v---~~a~~~lpi~iY 134 (288)
T cd00954 104 TPFYYK-FSFEEIKDYYREI---IAAAASLPMIIY 134 (288)
T ss_pred CCCCCC-CCHHHHHHHHHHH---HHhcCCCCEEEE
Confidence 544322 3445666655555 4456 7999874
No 140
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=80.38 E-value=6.2 Score=44.57 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=82.3
Q ss_pred CCcEEEEcccCChhhHHHHHHHH-------HhcCCCceEEEEecCHHHHhhHHHHHhhc----CEEEEc-----------
Q psy6272 252 AVDIIIMSSVTGANSIREMRGML-------EDHVDRVLILAKIETLLGMEYMDEIIMES----DGVVLN----------- 309 (547)
Q Consensus 252 g~d~I~~sfV~sa~di~~~r~~l-------~~~~~~i~IiakIEt~~av~nldeIl~~~----DgImIa----------- 309 (547)
+-=|+.+|+.++.++++--.+.+ +-....+++-..|||..|.-|++||+-.. =|+=-|
T Consensus 203 ~gpYfylPKme~~~EA~lwn~vF~~~E~~Lglp~gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~ 282 (526)
T PF01274_consen 203 SGPYFYLPKMESHEEARLWNDVFSFAEDLLGLPRGTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKT 282 (526)
T ss_dssp SSEEEEE-S-SSHHHHHHHHHHHHHHHHHHTSSTTSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHH
T ss_pred CCeEEEeCCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHH
Confidence 34588999999999998876654 22234699999999999999999999873 233333
Q ss_pred -----------CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC-CCCc--ccccccCccchhhHH----HHHH
Q psy6272 310 -----------RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP-DHNV--EEYSDVSIGDMNDVN----SIVQ 371 (547)
Q Consensus 310 -----------rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le-~Ptr--aE~~~~~~~~~~Dv~----nav~ 371 (547)
|..++++ .+-+..+.+..+..|.+.|...+. .|=. .|.+ .+. +...|..|. .-+.
T Consensus 283 ~~~~~~~vlPdR~~v~m~--~pfm~aY~~llv~tch~Rga~a~g--Gmaa~ip~~~d~~~---~~~a~~~v~~dK~rE~~ 355 (526)
T PF01274_consen 283 FRNRPDFVLPDRKQVTMT--QPFMRAYEDLLVRTCHRRGAHAMG--GMAAFIPIGKDPWA---NPDAMAKVRADKEREAK 355 (526)
T ss_dssp TCCGCCBB---GGGGGCG--SHHHHHHHHHHHHHHHHTT-HHHT--TCTTTSEEEEEEHH---BTTCHHHHHHHTHHHHH
T ss_pred hhhCCCcccccccccccc--CHHHHHHHHHHHHHHhhcCCcccc--CCccccCCCCChhh---hHHHHHHHHHHHHHHHh
Confidence 3443333 346788999999999999977543 2222 4443 122 111113332 5678
Q ss_pred hCccEEeeCCcchHH
Q psy6272 372 DGADVVVLTQSEQAH 386 (547)
Q Consensus 372 ~g~D~vmLsk~Eta~ 386 (547)
+|+||.+.. .++++
T Consensus 356 ~G~dg~WVa-hP~lv 369 (526)
T PF01274_consen 356 AGFDGAWVA-HPGLV 369 (526)
T ss_dssp TT-SEEEES-SHHHH
T ss_pred cCCCccccc-ChhHH
Confidence 999999999 99888
No 141
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=80.29 E-value=51 Score=36.34 Aligned_cols=98 Identities=18% Similarity=0.240 Sum_probs=66.8
Q ss_pred HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCC--------------CceEEEE--------------ecCH-HHHhh
Q psy6272 245 VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVD--------------RVLILAK--------------IETL-LGMEY 295 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~--------------~i~Iiak--------------IEt~-~av~n 295 (547)
..-....|+....+.+|-.-+.-+.+++.|...+- .+.|++. ++.. .=+++
T Consensus 57 a~NiasLGa~a~l~GvvG~Deag~~L~~~l~~~~i~~~l~~~~~r~T~~K~Rv~s~nQQllRvD~Ee~~~~~~~~~ll~~ 136 (467)
T COG2870 57 AKNIASLGANAYLVGVVGKDEAGKALIELLKANGIDSDLLRDKNRPTIVKLRVLSRNQQLLRLDFEEKFPIEDENKLLEK 136 (467)
T ss_pred HHHHHHcCCCEEEEEeeccchhHHHHHHHHHhcCcccceEeecCCCceeeeeeecccceEEEecccccCcchhHHHHHHH
Confidence 34556789999999999999888888888855321 1223331 1222 23457
Q ss_pred HHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccc
Q psy6272 296 MDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEY 355 (547)
Q Consensus 296 ldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~ 355 (547)
+++.++..|++++.-+-=| -+...|+ ||+.||++|+||.+ +|.--.+
T Consensus 137 ~~~~l~~~~~vVLSDY~KG------~L~~~q~-~I~~ar~~~~pVLv------DPKg~Df 183 (467)
T COG2870 137 IKNALKSFDALVLSDYAKG------VLTNVQK-MIDLAREAGIPVLV------DPKGKDF 183 (467)
T ss_pred HHHHhhcCCEEEEeccccc------cchhHHH-HHHHHHHcCCcEEE------CCCCcch
Confidence 7888888899998733333 2333565 99999999999999 8875333
No 142
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=80.23 E-value=36 Score=37.21 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=68.2
Q ss_pred HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCChHHH
Q psy6272 244 VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSVEVT 322 (547)
Q Consensus 244 di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~~e~v 322 (547)
+++.+.+.|+|+|.++.-.+...+.++.++..+.|..+.+ .-+-....++.+.+..+. +|.|.+++|--+...+...+
T Consensus 73 ~v~~a~~aGAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~-g~~s~~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~ 151 (430)
T PRK07028 73 EVEMAAKAGADIVCILGLADDSTIEDAVRAARKYGVRLMA-DLINVPDPVKRAVELEELGVDYINVHVGIDQQMLGKDPL 151 (430)
T ss_pred HHHHHHHcCCCEEEEecCCChHHHHHHHHHHHHcCCEEEE-EecCCCCHHHHHHHHHhcCCCEEEEEeccchhhcCCChH
Confidence 7888999999999976433333456666666655443322 112112234555666665 79998887643222222111
Q ss_pred HHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 323 FLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 323 ~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
...+++. ...+.|+.+...+ + . ..+..++..|+|++.+.
T Consensus 152 -~~l~~l~---~~~~iPI~a~GGI----~---~--------~n~~~~l~aGAdgv~vG 190 (430)
T PRK07028 152 -ELLKEVS---EEVSIPIAVAGGL----D---A--------ETAAKAVAAGADIVIVG 190 (430)
T ss_pred -HHHHHHH---hhCCCcEEEECCC----C---H--------HHHHHHHHcCCCEEEEC
Confidence 1222222 2356898886653 1 2 45567788899999886
No 143
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=80.09 E-value=72 Score=32.34 Aligned_cols=149 Identities=14% Similarity=0.184 Sum_probs=87.6
Q ss_pred CcCCCCCChhhHHHHHHHHHcCCcEEEEcccCC-hhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEE-
Q psy6272 231 TFNLPVIADRDKHVVDLIVREAVDIIIMSSVTG-ANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVL- 308 (547)
Q Consensus 231 ~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~s-a~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImI- 308 (547)
.++.--+.+.=...++.-.+.|+|+|.+-+ +. ..+..++-+.+.+.|.+..+..+-.| .++.++.++...|.|+|
T Consensus 61 ~~DvHLMv~~P~~~i~~~~~aGad~it~H~-Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T--~~~~l~~~l~~vD~VLvM 137 (229)
T PRK09722 61 PLDVHLMVTDPQDYIDQLADAGADFITLHP-ETINGQAFRLIDEIRRAGMKVGLVLNPET--PVESIKYYIHLLDKITVM 137 (229)
T ss_pred CeEEEEEecCHHHHHHHHHHcCCCEEEECc-cCCcchHHHHHHHHHHcCCCEEEEeCCCC--CHHHHHHHHHhcCEEEEE
Confidence 344444555545578888899999988865 53 35677777888888988888888887 56889999999998776
Q ss_pred --cCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCc----
Q psy6272 309 --NRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQS---- 382 (547)
Q Consensus 309 --argDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~---- 382 (547)
-||-=|..+-.+-+..+. ++-+...++|..+.+.- +-.-- . .-+......|||.+++. +
T Consensus 138 sV~PGf~GQ~fi~~~l~KI~-~lr~~~~~~~~~~~IeV----DGGI~-~--------~~i~~~~~aGad~~V~G-ss~iF 202 (229)
T PRK09722 138 TVDPGFAGQPFIPEMLDKIA-ELKALRERNGLEYLIEV----DGSCN-Q--------KTYEKLMEAGADVFIVG-TSGLF 202 (229)
T ss_pred EEcCCCcchhccHHHHHHHH-HHHHHHHhcCCCeEEEE----ECCCC-H--------HHHHHHHHcCCCEEEEC-hHHHc
Confidence 333333222222222222 23233345554443310 11100 0 22334566799999876 2
Q ss_pred ---chHHHHHHHHHHHHH
Q psy6272 383 ---EQAHHRVDILKEILK 397 (547)
Q Consensus 383 ---Eta~eaV~~m~~I~~ 397 (547)
+.-.++++.|++...
T Consensus 203 ~~~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 203 NLDEDIDEAWDIMTAQIE 220 (229)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 222266666665543
No 144
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=80.04 E-value=18 Score=37.18 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=59.8
Q ss_pred HHHHHHHHHcCCcEEEEc------ccCChhh-HHHHHHHHHhcCCCceEEEEec---CHHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMS------SVTGANS-IREMRGMLEDHVDRVLILAKIE---TLLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~s------fV~sa~d-i~~~r~~l~~~~~~i~IiakIE---t~~av~nldeIl~~-~DgImIar 310 (547)
...+++.++.|+|+|++. +-=|.++ .+-++...+..+.++.|++.+- +.++++.....-+. +|++|+.+
T Consensus 22 ~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad~v~v~p 101 (285)
T TIGR00674 22 EKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVGADGFLVVT 101 (285)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 445678899999999974 2223333 3333444555566788999874 23444444333333 59999987
Q ss_pred CcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 311 IQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 311 gDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-... ..+.+.+...-+.|.+ +.+.|+++-
T Consensus 102 P~y~-~~~~~~i~~~~~~i~~---~~~~pi~lY 130 (285)
T TIGR00674 102 PYYN-KPTQEGLYQHFKAIAE---EVDLPIILY 130 (285)
T ss_pred CcCC-CCCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 5543 2344566666665644 458998874
No 145
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=79.96 E-value=59 Score=32.21 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=76.6
Q ss_pred CCCChhhHHH-HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEe-----------cCHHHHhhHHHHHhh
Q psy6272 235 PVIADRDKHV-VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKI-----------ETLLGMEYMDEIIME 302 (547)
Q Consensus 235 p~lt~~D~~d-i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakI-----------Et~~av~nldeIl~~ 302 (547)
|..+..|.+. ++.+.+.|+|.|+++ +--+...+..+. + +..++.++ .+..-+..+++.++.
T Consensus 16 p~~~~~d~~~~~~~~~~~g~~av~v~----~~~~~~~~~~~~--~-~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~ 88 (235)
T cd00958 16 PNPGLEDPEETVKLAAEGGADAVALT----KGIARAYGREYA--G-DIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL 88 (235)
T ss_pred CCccccCHHHHHHHHHhcCCCEEEeC----hHHHHhcccccC--C-CCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence 5556777664 578888899999998 333444443331 1 22233222 112223346666665
Q ss_pred -cCEE--EEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC--C---CCcccccccCccchhh-HHHHHHhC
Q psy6272 303 -SDGV--VLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP--D---HNVEEYSDVSIGDMND-VNSIVQDG 373 (547)
Q Consensus 303 -~DgI--mIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le--~---PtraE~~~~~~~~~~D-v~nav~~g 373 (547)
+|++ ++-.+++. ..++...-+++.+.|+++|.|+++-+.... . -+..++ .. +..+...|
T Consensus 89 Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i--------~~~~~~a~~~G 156 (235)
T cd00958 89 GADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLI--------AYAARIGAELG 156 (235)
T ss_pred CCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHH--------HHHHHHHHHHC
Confidence 6877 66656553 456666777899999999999998332100 0 011222 33 33477789
Q ss_pred ccEEeeCCcch
Q psy6272 374 ADVVVLTQSEQ 384 (547)
Q Consensus 374 ~D~vmLsk~Et 384 (547)
+|.+-++ ..+
T Consensus 157 aD~Ik~~-~~~ 166 (235)
T cd00958 157 ADIVKTK-YTG 166 (235)
T ss_pred CCEEEec-CCC
Confidence 9999998 543
No 146
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=79.96 E-value=16 Score=42.64 Aligned_cols=124 Identities=15% Similarity=0.158 Sum_probs=83.4
Q ss_pred EeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEE--cccCChhhHHHHHHHHHhcCCCceEEEEec--CHHHH
Q psy6272 218 KLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIM--SSVTGANSIREMRGMLEDHVDRVLILAKIE--TLLGM 293 (547)
Q Consensus 218 ~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~--sfV~sa~di~~~r~~l~~~~~~i~IiakIE--t~~av 293 (547)
.++++-.|.+-...-.-..=++.-.+.|....+.|+|.|-+ +-.+.|+.+..+++.|.+.+-++.++|-|= -..|+
T Consensus 89 ~iGG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al 168 (733)
T PLN02925 89 ALGSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGYNIPLVADIHFAPSVAL 168 (733)
T ss_pred eECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHH
Confidence 35666666654433222222344566677888899998765 445556666667777777788999999773 33344
Q ss_pred hhHHHHHhhcCEEEEcCCcccccC---------------ChHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 294 EYMDEIIMESDGVVLNRIQLAVAT---------------SVEVTFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 294 ~nldeIl~~~DgImIargDLg~e~---------------~~e~v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
+ -++.+|.|=|.||.++-.- .++++..--..++.+|+++|+|+=+.+.
T Consensus 169 ~----a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN 231 (733)
T PLN02925 169 R----VAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTN 231 (733)
T ss_pred H----HHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 3 3334899999999998752 1234555556799999999999877765
No 147
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=79.70 E-value=39 Score=34.93 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=74.6
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+.+|.|+++. .|..+.. .-....-..|++.+.....++..++.+...++.++-... |..+
T Consensus 74 lA~~a~~~G~~~~i~-----~p~~~~~--------~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~~~-~~~~- 138 (290)
T TIGR01138 74 LAMIAALKGYRMKLL-----MPDNMSQ--------ERKAAMRAYGAELILVTKEEGMEGARDLALELANRGEGK-LLDQ- 138 (290)
T ss_pred HHHHHHHcCCeEEEE-----ECCCCCH--------HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCC-CCCc-
Confidence 556799999999986 4444333 444556668999999872234346666555555443222 2111
Q ss_pred HHHhhhcCCCCCCh-hhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDP-AHSIVIACVNAALKCQ--AVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~-~~~ia~aav~~a~~~~--a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~ 471 (547)
|.. +..+ .+ ...-+.|+..+++ .++||+-+-+|.++.-++ .++|...|++|-+..
T Consensus 139 ~~~-------~~~~~~~-~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~ 200 (290)
T TIGR01138 139 FNN-------PDNPYAH-YTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEE 200 (290)
T ss_pred cCC-------cccHHHH-hHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 111 1111 12 2345567777664 789999999998876444 468999999999964
No 148
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=79.67 E-value=60 Score=33.65 Aligned_cols=121 Identities=17% Similarity=0.070 Sum_probs=68.7
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcc-cccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVE-EYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~Ptra-E~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
+...|+.+|.++.+.. |... .. ......-..|++.++.. .+.-.++.+...++.++.++... ..
T Consensus 73 lA~~a~~~G~~~~ivv-----p~~~~~~--------~~~~~~~~~Ga~v~~v~-~~~~~~~~~~~~~~~~~~~~~~~-~~ 137 (311)
T TIGR01275 73 TALAAKKLGLDAVLVL-----REKEELN--------GNLLLDKLMGAETRVYS-AEEYFEIMKYAEELAEELEKEGR-KP 137 (311)
T ss_pred HHHHHHHhCCceEEEe-----cCCccCC--------CCHHHHHHcCCEEEEEC-chhhhhhHHHHHHHHHHHHhcCC-Ce
Confidence 5668999999988863 3321 11 11222346899999887 53322334444455444332110 00
Q ss_pred HHHHhhhcCCCCCCh--hhHHHHHHHHHHHhc----CCcEEEEEcCCchHHHHHHh----cCCCCCEEEEeC
Q psy6272 408 VFEDLCALACPPLDP--AHSIVIACVNAALKC----QAVAIIVITCSGYSAKLVSK----YRPQCPILAVSS 469 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~--~~~ia~aav~~a~~~----~a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~ 469 (547)
++. . ....++ .+.....+.|+..++ ..++||+-.-||.|+--+++ ++|+++|++|-+
T Consensus 138 ~~~-p----~~~~~~~~~~g~~~~~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~ 204 (311)
T TIGR01275 138 YVI-P----VGGSNSLGTLGYVEAVLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAV 204 (311)
T ss_pred EEE-C----CCCCcHHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 000 0 001111 222223466777766 47999999999999876655 489999998864
No 149
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=79.63 E-value=59 Score=34.93 Aligned_cols=138 Identities=11% Similarity=0.078 Sum_probs=83.0
Q ss_pred CCChhhHHHH-HHHHHcCCcEEEEcc-cCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEE--cC
Q psy6272 236 VIADRDKHVV-DLIVREAVDIIIMSS-VTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVL--NR 310 (547)
Q Consensus 236 ~lt~~D~~di-~~~~~~g~d~I~~sf-V~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImI--ar 310 (547)
.+|..++..| +...+.|+|.|=+.| +.+.++.+.++.+.+ .+.+..+.+-+-. -.+.++..++. .|.|-+ +=
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~~-~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~ 94 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQ-EGLNAEICSLARA--LKKDIDKAIDCGVDSIHTFIAT 94 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHh-cCCCcEEEEEccc--CHHHHHHHHHcCcCEEEEEEcC
Confidence 4566666655 456669999998754 566777766666654 3556666665531 12334443433 464433 44
Q ss_pred Ccccc----cCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH-HHHHhCccEEeeCCcchH
Q psy6272 311 IQLAV----ATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN-SIVQDGADVVVLTQSEQA 385 (547)
Q Consensus 311 gDLg~----e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~-nav~~g~D~vmLsk~Eta 385 (547)
.|+-. -.+.++....-...++.|+++|..|.+... +.+|++. .++.+++ .+...|+|.+.|. +|.
T Consensus 95 Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e---da~r~~~-----~~l~~~~~~~~~~g~~~i~l~--DT~ 164 (363)
T TIGR02090 95 SPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE---DATRTDI-----DFLIKVFKRAEEAGADRINIA--DTV 164 (363)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe---ecCCCCH-----HHHHHHHHHHHhCCCCEEEEe--CCC
Confidence 44321 234455666667789999999998877533 5555554 1124444 3466799999997 554
Q ss_pred H
Q psy6272 386 H 386 (547)
Q Consensus 386 ~ 386 (547)
=
T Consensus 165 G 165 (363)
T TIGR02090 165 G 165 (363)
T ss_pred C
Confidence 3
No 150
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=79.35 E-value=37 Score=33.66 Aligned_cols=118 Identities=15% Similarity=0.186 Sum_probs=75.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHH
Q psy6272 328 MIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 328 ~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
.+...|+..|.|+++. .|..... ......-..|++.+... +. -.++.+...+++++-...++-.+
T Consensus 64 alA~~a~~~g~~~~v~-----~p~~~~~--------~~~~~~~~~Ga~v~~~~-~~-~~~~~~~a~~~~~~~~~~~~~~~ 128 (244)
T cd00640 64 ALAAAAARLGLKCTIV-----MPEGASP--------EKVAQMRALGAEVVLVP-GD-FDDAIALAKELAEEDPGAYYVNQ 128 (244)
T ss_pred HHHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHHCCCEEEEEC-CC-HHHHHHHHHHHHHhCCCCEecCC
Confidence 3567899999999886 4544444 55666777899998887 55 23566655555544211111111
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHH----hcCCCCCEEEEeC
Q psy6272 408 VFEDLCALACPPLDPAHSIVIACVNAALKCQ---AVAIIVITCSGYSAKLVS----KYRPQCPILAVSS 469 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~---a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~ 469 (547)
| ......+.-...+.|+.++++ .+.|++.+-+|.++.-++ .++|...|+++.+
T Consensus 129 -~--------~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 129 -F--------DNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred -C--------CCHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 0 011223334455667777765 689999999999887554 4568899999987
No 151
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=79.13 E-value=11 Score=40.51 Aligned_cols=101 Identities=13% Similarity=0.182 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHcCCcEEE--EcccCChhhHHHHHHHHHhcCCCceEEEEe--cCHHHHhhHHHHHhhcCEEEEcCCcccc
Q psy6272 240 RDKHVVDLIVREAVDIII--MSSVTGANSIREMRGMLEDHVDRVLILAKI--ETLLGMEYMDEIIMESDGVVLNRIQLAV 315 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~--~sfV~sa~di~~~r~~l~~~~~~i~IiakI--Et~~av~nldeIl~~~DgImIargDLg~ 315 (547)
.-.+.|....+.|+|.|- +|-.+.|+.+.++++.|.+.|.++.++|-| .-+.|++-+ - .+|.|=|.||.++-
T Consensus 32 atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~---~-~v~kiRINPGNi~~ 107 (359)
T PF04551_consen 32 ATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAI---E-AVDKIRINPGNIVD 107 (359)
T ss_dssp HHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHH---H-C-SEEEE-TTTSS-
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHH---H-HhCeEEECCCcccc
Confidence 345567778889999865 455556666777777788888999999977 445555543 2 38999999999952
Q ss_pred cC--ChHHHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 316 AT--SVEVTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 316 e~--~~e~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
++ +...+..--+.++++|+++|+|+=+..
T Consensus 108 ~~~~~~g~~~~~~~~vv~~ake~~ipIRIGv 138 (359)
T PF04551_consen 108 EFQEELGSIREKVKEVVEAAKERGIPIRIGV 138 (359)
T ss_dssp ---SS-SS-HHHHHHHHHHHHHHT-EEEEEE
T ss_pred cccccccchHHHHHHHHHHHHHCCCCEEEec
Confidence 11 112345566779999999999976543
No 152
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=78.79 E-value=21 Score=36.50 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=61.5
Q ss_pred HHHHHHHHHcCCcEEEEccc------CChhhHHHHH-HHHHhcCCCceEEEEecC---HHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMSSV------TGANSIREMR-GMLEDHVDRVLILAKIET---LLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV------~sa~di~~~r-~~l~~~~~~i~IiakIEt---~~av~nldeIl~~-~DgImIar 310 (547)
...+++.++.|+++|++.=- -|.++-+++- ...+..+.++.|++.+-. .++++......+. +|+||+.+
T Consensus 24 ~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d~v~~~~ 103 (284)
T cd00950 24 ERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVT 103 (284)
T ss_pred HHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCCEEEEcc
Confidence 55678999999999987621 1233333333 334444567889998853 3555555444444 69999997
Q ss_pred CcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 311 IQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 311 gDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-... ..+-+.+...-+.|.+ +.+.|+++-
T Consensus 104 P~~~-~~~~~~l~~~~~~ia~---~~~~pi~lY 132 (284)
T cd00950 104 PYYN-KPSQEGLYAHFKAIAE---ATDLPVILY 132 (284)
T ss_pred cccC-CCCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 6542 2234566666666655 468999975
No 153
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=78.38 E-value=41 Score=34.50 Aligned_cols=120 Identities=18% Similarity=0.258 Sum_probs=76.0
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcch---HHHHHHHHHHHHHHhhhhhhh
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQ---AHHRVDILKEILKKTESVLWE 405 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Et---a~eaV~~m~~I~~~aE~~~~~ 405 (547)
+...|+++|.|+.+. .|..+.. .-+...-..|++.+... +.. ..++++...++.++-+..++.
T Consensus 68 lA~~a~~~G~~~~i~-----vp~~~~~--------~k~~~~~~~Ga~v~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~ 133 (291)
T cd01561 68 LAMVAAAKGYRFIIV-----MPETMSE--------EKRKLLRALGAEVILTP-EAEADGMKGAIAKARELAAETPNAFWL 133 (291)
T ss_pred HHHHHHHcCCeEEEE-----ECCCCCH--------HHHHHHHHcCCEEEEeC-CCCcCCHHHHHHHHHHHHhhCCCcEEe
Confidence 567899999999886 4544434 44556667899999887 543 346666666655432111111
Q ss_pred HHHHHHhhhcCCCCCChhhHHH-HHHHHHHHhcC--CcEEEEEcCCchHHHHH----HhcCCCCCEEEEeCch
Q psy6272 406 KQVFEDLCALACPPLDPAHSIV-IACVNAALKCQ--AVAIIVITCSGYSAKLV----SKYRPQCPILAVSSLG 471 (547)
Q Consensus 406 ~~~f~~~~~~~~~~~~~~~~ia-~aav~~a~~~~--a~aIvv~T~sG~tA~~i----sk~RP~~pIiavt~~~ 471 (547)
.+ |+ .+ ...+.-. .-+.|+.++++ .++||+-+-+|.++.-+ ..++|...|++|.+..
T Consensus 134 ~~-~~-------~p-~~~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 197 (291)
T cd01561 134 NQ-FE-------NP-ANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVG 197 (291)
T ss_pred cC-CC-------Cc-hHHHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 10 10 01 1112222 44667777765 79999999999887644 4567999999999874
No 154
>PRK07695 transcriptional regulator TenI; Provisional
Probab=78.37 E-value=36 Score=33.02 Aligned_cols=105 Identities=13% Similarity=0.185 Sum_probs=62.3
Q ss_pred HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccC------
Q psy6272 245 VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVAT------ 317 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~------ 317 (547)
.+.+.+.|+|+|.++.- ...+..+|+.+ .+..|-+.+.|.+- +.+..+. +|.+++++-..+..-
T Consensus 66 ~~la~~~~~~gvHl~~~--~~~~~~~r~~~----~~~~ig~s~~s~e~---a~~a~~~Gadyi~~g~v~~t~~k~~~~~~ 136 (201)
T PRK07695 66 VDIALLLNIHRVQLGYR--SFSVRSVREKF----PYLHVGYSVHSLEE---AIQAEKNGADYVVYGHVFPTDCKKGVPAR 136 (201)
T ss_pred HHHHHHcCCCEEEeCcc--cCCHHHHHHhC----CCCEEEEeCCCHHH---HHHHHHcCCCEEEECCCCCCCCCCCCCCC
Confidence 45778889999999863 23355666543 23455555554432 2222222 699998874433211
Q ss_pred ChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 318 SVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 318 ~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+++.+ -+.+...++||+....+ + . .++..+...|+|++.+.
T Consensus 137 g~~~l-------~~~~~~~~ipvia~GGI----~---~--------~~~~~~~~~Ga~gvav~ 177 (201)
T PRK07695 137 GLEEL-------SDIARALSIPVIAIGGI----T---P--------ENTRDVLAAGVSGIAVM 177 (201)
T ss_pred CHHHH-------HHHHHhCCCCEEEEcCC----C---H--------HHHHHHHHcCCCEEEEE
Confidence 22222 22234458999987764 1 2 56677778899999886
No 155
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=78.00 E-value=36 Score=34.49 Aligned_cols=125 Identities=16% Similarity=0.128 Sum_probs=73.7
Q ss_pred CCCCCChhhHHHHHHHHHcCCcEEEEc----------------ccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhH
Q psy6272 233 NLPVIADRDKHVVDLIVREAVDIIIMS----------------SVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYM 296 (547)
Q Consensus 233 ~lp~lt~~D~~di~~~~~~g~d~I~~s----------------fV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nl 296 (547)
++-.-+.++...+...+..++|+|=+. ..++++-+.++.+.+.+ .++.|.+||=-----.+.
T Consensus 73 nv~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~--~~~PVsvKiR~~~~~~~~ 150 (231)
T TIGR00736 73 NVRFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE--LNKPIFVKIRGNCIPLDE 150 (231)
T ss_pred EEecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc--CCCcEEEEeCCCCCcchH
Confidence 333445566666655566789998775 23456666666665653 367899998531111122
Q ss_pred HHHHhh-----cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhHHHH
Q psy6272 297 DEIIME-----SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSI 369 (547)
Q Consensus 297 deIl~~-----~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~na 369 (547)
.++++. +|+|-|..+.-| . +.+.-+.|+..+++ .+|+|--..+. .. .|+...
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~~g----~---~~a~~~~I~~i~~~~~~ipIIgNGgI~------s~--------eda~e~ 209 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMYPG----K---PYADMDLLKILSEEFNDKIIIGNNSID------DI--------ESAKEM 209 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCCCC----C---chhhHHHHHHHHHhcCCCcEEEECCcC------CH--------HHHHHH
Confidence 244333 599988532211 1 11233344444444 48988765533 23 788888
Q ss_pred HHhCccEEeeC
Q psy6272 370 VQDGADVVVLT 380 (547)
Q Consensus 370 v~~g~D~vmLs 380 (547)
+..|+|+||+.
T Consensus 210 l~~GAd~Vmvg 220 (231)
T TIGR00736 210 LKAGADFVSVA 220 (231)
T ss_pred HHhCCCeEEEc
Confidence 88999999997
No 156
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=77.76 E-value=3.9 Score=43.66 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=43.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHHh--CCcEEeec-cCCCHHHHHHHHHHHHHHH
Q psy6272 55 TNIMATVGENNNSVDLIKLMLRS--GVNILRIP-THSSKLYQVEKILKNVKLA 104 (547)
Q Consensus 55 tkIi~TiGpas~~~e~l~~li~a--Gm~v~RiN-sHg~~e~~~~~~i~~ir~a 104 (547)
-++.+++|-..++.+.+++|+++ |+|+.=|+ |||..+...+ +|+.||+.
T Consensus 97 ~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~-~ik~ik~~ 148 (346)
T PRK05096 97 KHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQ-FVAKAREA 148 (346)
T ss_pred ceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHH-HHHHHHHh
Confidence 45666899888999999999995 99999999 9999998888 88888874
No 157
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=77.61 E-value=28 Score=36.02 Aligned_cols=121 Identities=15% Similarity=0.187 Sum_probs=74.9
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcch-HHHHHHHHHHHHHHhhhhhhhHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQ-AHHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Et-a~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
+...|+++|.|+.+. .|..+.. .-+...-..|++.+... ++. -.++++...++.++-..+++..+
T Consensus 73 lA~~a~~~G~~~~i~-----vp~~~~~--------~k~~~~~~~GA~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~ 138 (299)
T TIGR01136 73 LAMVAAAKGYKLILT-----MPETMSL--------ERRKLLRAYGAELILTP-AEEGMKGAIDKAEELAAETNKYVMLDQ 138 (299)
T ss_pred HHHHHHHcCCcEEEE-----ECCCCCH--------HHHHHHHHcCCEEEEeC-CCCChHHHHHHHHHHHhhCCCeEecCC
Confidence 566899999998886 5554444 44555666899999887 542 34666655555443211111111
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHH----HHhcCCCCCEEEEeCch
Q psy6272 408 VFEDLCALACPPLDPAHSIVIACVNAALKCQ--AVAIIVITCSGYSAKL----VSKYRPQCPILAVSSLG 471 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~--a~aIvv~T~sG~tA~~----isk~RP~~pIiavt~~~ 471 (547)
|+ .+..+..-....+.|+.++++ .+.||+-+-+|.++-- +..++|...|++|.+..
T Consensus 139 -~~-------~~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~ 200 (299)
T TIGR01136 139 -FE-------NPANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAE 200 (299)
T ss_pred -CC-------CchhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 11 011111113345567777774 8999998889988854 44567999999999964
No 158
>PRK12483 threonine dehydratase; Reviewed
Probab=77.28 E-value=26 Score=39.64 Aligned_cols=156 Identities=17% Similarity=0.165 Sum_probs=96.0
Q ss_pred ceEEEEecCHHHHh---------hHHHHHhh--cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q psy6272 281 VLILAKIETLLGME---------YMDEIIME--SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPD 349 (547)
Q Consensus 281 i~IiakIEt~~av~---------nldeIl~~--~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~ 349 (547)
..|+.|.|+.+-.- .+..+... ..||+-+ +-| -.+|- +...|+.+|.|+.+. .
T Consensus 52 ~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~a------SaG----Nha~g-vA~aA~~lGi~~~Iv-----m 115 (521)
T PRK12483 52 NQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITA------SAG----NHAQG-VALAAARLGVKAVIV-----M 115 (521)
T ss_pred CEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEE------CCC----HHHHH-HHHHHHHhCCCEEEE-----E
Confidence 36899999876442 22222211 2455433 222 22343 667899999999886 4
Q ss_pred CCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHH
Q psy6272 350 HNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIA 429 (547)
Q Consensus 350 PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~a 429 (547)
|..+.. .-+...-..||+.++. +++..++++...+++++- ...+..+ |+ .......-..-
T Consensus 116 P~~tp~--------~Kv~~~r~~GAeVil~--g~~~d~a~~~A~~la~e~-g~~~v~p-fd--------d~~viaGqgTi 175 (521)
T PRK12483 116 PRTTPQ--------LKVDGVRAHGGEVVLH--GESFPDALAHALKLAEEE-GLTFVPP-FD--------DPDVIAGQGTV 175 (521)
T ss_pred CCCCCH--------HHHHHHHHCCCEEEEE--CCCHHHHHHHHHHHHHhc-CCeeeCC-CC--------ChHHHHHHHHH
Confidence 554444 5566677789987765 566667877777665542 2111100 11 01122222344
Q ss_pred HHHHHHhcC--CcEEEEEcCCchHHHHHHh----cCCCCCEEEEeCchh
Q psy6272 430 CVNAALKCQ--AVAIIVITCSGYSAKLVSK----YRPQCPILAVSSLGY 472 (547)
Q Consensus 430 av~~a~~~~--a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~~~~ 472 (547)
+.|+..+++ .++||+..-+|.+..-+++ ++|.+.|++|-+...
T Consensus 176 g~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a 224 (521)
T PRK12483 176 AMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDS 224 (521)
T ss_pred HHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 777777774 7999999999998876665 489999999998643
No 159
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=77.27 E-value=52 Score=31.77 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=66.1
Q ss_pred HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCH-HHHhhHHHHHh-hcCEEEEcCCccccc---CC
Q psy6272 244 VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETL-LGMEYMDEIIM-ESDGVVLNRIQLAVA---TS 318 (547)
Q Consensus 244 di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~-~av~nldeIl~-~~DgImIargDLg~e---~~ 318 (547)
.++.+.+.|+|+|.+++..+...+.++.+++.+.| +++++-+-++ .-.+.+..... -+|.+-+.+|-=+.. .+
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~~~~~~~~i~~~~~~g--~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~ 145 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVADDATIKGAVKAAKKHG--KEVQVDLINVKDKVKRAKELKELGADYIGVHTGLDEQAKGQNP 145 (206)
T ss_pred HHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHHcC--CEEEEEecCCCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCC
Confidence 67889999999999888766666777777777654 5555443222 12333344444 479998877532222 23
Q ss_pred hHHHHHHHHHHHHHHHHcCCcEEE-EcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 319 VEVTFLAQKMIAARCNKQGKPFLV-VGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 319 ~e~v~~~qk~ii~~c~~~gKPvi~-aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
++++..+.+ ....+.+. ...+ + . .++..+...|+|++.+.
T Consensus 146 ~~~i~~l~~-------~~~~~~i~v~GGI----~---~--------~n~~~~~~~Ga~~v~vG 186 (206)
T TIGR03128 146 FEDLQTILK-------LVKEARVAVAGGI----N---L--------DTIPDVIKLGPDIVIVG 186 (206)
T ss_pred HHHHHHHHH-------hcCCCcEEEECCc----C---H--------HHHHHHHHcCCCEEEEe
Confidence 333332222 22234443 3321 2 1 45566778899999985
No 160
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=76.90 E-value=80 Score=31.83 Aligned_cols=117 Identities=15% Similarity=0.196 Sum_probs=65.3
Q ss_pred hHHHHHHHHHcCCcEEEEcc--cCChhhHHHHHHHHHhcCCCceEEEEec---------------------CHHHHhhHH
Q psy6272 241 DKHVVDLIVREAVDIIIMSS--VTGANSIREMRGMLEDHVDRVLILAKIE---------------------TLLGMEYMD 297 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sf--V~sa~di~~~r~~l~~~~~~i~IiakIE---------------------t~~av~nld 297 (547)
+.++++..++.|+|.|++.- .++++.+.++.+.. +++ +|++-+. ....++-+.
T Consensus 85 s~~~~~~~l~~Ga~~Viigt~~l~~p~~~~ei~~~~---g~~-~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 160 (253)
T PRK02083 85 SVEDARRLLRAGADKVSINSAAVANPELISEAADRF---GSQ-CIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAK 160 (253)
T ss_pred CHHHHHHHHHcCCCEEEEChhHhhCcHHHHHHHHHc---CCC-CEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHH
Confidence 57778888889999998864 34556666655544 221 2222221 111122223
Q ss_pred HHHhh-cCEEEEcCCc-ccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHH-hCc
Q psy6272 298 EIIME-SDGVVLNRIQ-LAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQ-DGA 374 (547)
Q Consensus 298 eIl~~-~DgImIargD-Lg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~-~g~ 374 (547)
++... +|++++-.-+ =|..-|+ .+. .+-+.++..+.|++.+..+. .. .|+..+.. .|+
T Consensus 161 ~~~~~g~~~ii~~~i~~~g~~~g~-d~~----~i~~~~~~~~ipvia~GGv~------s~--------~d~~~~~~~~G~ 221 (253)
T PRK02083 161 EVEELGAGEILLTSMDRDGTKNGY-DLE----LTRAVSDAVNVPVIASGGAG------NL--------EHFVEAFTEGGA 221 (253)
T ss_pred HHHHcCCCEEEEcCCcCCCCCCCc-CHH----HHHHHHhhCCCCEEEECCCC------CH--------HHHHHHHHhCCc
Confidence 33333 5777653211 1222233 121 12233455789999998754 24 78888776 599
Q ss_pred cEEeeC
Q psy6272 375 DVVVLT 380 (547)
Q Consensus 375 D~vmLs 380 (547)
|++|.+
T Consensus 222 ~gvivg 227 (253)
T PRK02083 222 DAALAA 227 (253)
T ss_pred cEEeEh
Confidence 999997
No 161
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=76.89 E-value=54 Score=30.66 Aligned_cols=100 Identities=17% Similarity=0.161 Sum_probs=49.4
Q ss_pred hhHHHHHHhCccEEeeCCcchH-------HHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHHh
Q psy6272 364 NDVNSIVQDGADVVVLTQSEQA-------HHRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALK 436 (547)
Q Consensus 364 ~Dv~nav~~g~D~vmLsk~Eta-------~eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~ 436 (547)
..+-.+...|+|++++. ...- .+.++....|+.+++..+.- -.+ ..+...-..+.+. ..++++..
T Consensus 69 ~~a~~a~~~Gad~i~v~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv-~iy-----~~p~~~~~~~~~~-~~~~~~~~ 140 (201)
T cd00945 69 AEVEEAIDLGADEIDVV-INIGSLKEGDWEEVLEEIAAVVEAADGGLPL-KVI-----LETRGLKTADEIA-KAARIAAE 140 (201)
T ss_pred HHHHHHHHcCCCEEEEe-ccHHHHhCCCHHHHHHHHHHHHHHhcCCceE-EEE-----EECCCCCCHHHHH-HHHHHHHH
Confidence 55567888899999996 4432 24456666666554111100 000 0011110223333 33555667
Q ss_pred cCCcEEEEEcC------CchHHHHH-HhcCCCCCEEEEeCch
Q psy6272 437 CQAVAIIVITC------SGYSAKLV-SKYRPQCPILAVSSLG 471 (547)
Q Consensus 437 ~~a~aIvv~T~------sG~tA~~i-sk~RP~~pIiavt~~~ 471 (547)
.++++|=..+. +-...+.+ ..+.+++||++.....
T Consensus 141 ~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~ 182 (201)
T cd00945 141 AGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK 182 (201)
T ss_pred hCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC
Confidence 78886655443 11222233 3333367887777544
No 162
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=76.56 E-value=85 Score=33.69 Aligned_cols=137 Identities=10% Similarity=0.082 Sum_probs=76.7
Q ss_pred CCChhhHHHH-HHHHHcCCcEEEEcccCCh-hhHHHHHHHHHhcCCCceEEEEe-cCHHHHhhHHHHHhh-cCE--EEEc
Q psy6272 236 VIADRDKHVV-DLIVREAVDIIIMSSVTGA-NSIREMRGMLEDHVDRVLILAKI-ETLLGMEYMDEIIME-SDG--VVLN 309 (547)
Q Consensus 236 ~lt~~D~~di-~~~~~~g~d~I~~sfV~sa-~di~~~r~~l~~~~~~i~IiakI-Et~~av~nldeIl~~-~Dg--ImIa 309 (547)
.+|..++..| +...+.|+|.|=+.|-... .+.+.++.+. +.+.+..+.+-. -+.+. ++..+.. .|. ++++
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~~~~e~i~~i~-~~~~~~~i~~~~r~~~~d---i~~a~~~g~~~i~i~~~ 94 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVGIPAMGEEERAVIRAIV-ALGLPARLMAWCRARDAD---IEAAARCGVDAVHISIP 94 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHH-HcCCCcEEEEEcCCCHHH---HHHHHcCCcCEEEEEEc
Confidence 4566666555 5666799999977654433 3445555544 333445555543 23333 3333433 353 4444
Q ss_pred CCccccc----CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH-HHHHhCccEEeeCCcch
Q psy6272 310 RIQLAVA----TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN-SIVQDGADVVVLTQSEQ 384 (547)
Q Consensus 310 rgDLg~e----~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~-nav~~g~D~vmLsk~Et 384 (547)
-.|+-.+ ...++.....++.++.++++|..|-+... +-+|++. ..+-+++ .+...|+|.+.|. +|
T Consensus 95 ~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e---d~~r~~~-----~~l~~~~~~~~~~Ga~~i~l~--DT 164 (365)
T TIGR02660 95 VSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE---DASRADP-----DFLVELAEVAAEAGADRFRFA--DT 164 (365)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec---CCCCCCH-----HHHHHHHHHHHHcCcCEEEEc--cc
Confidence 4442221 22345455556688999999998877543 5555544 1124444 3455799999997 55
Q ss_pred HH
Q psy6272 385 AH 386 (547)
Q Consensus 385 a~ 386 (547)
.=
T Consensus 165 ~G 166 (365)
T TIGR02660 165 VG 166 (365)
T ss_pred CC
Confidence 54
No 163
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=76.07 E-value=41 Score=36.29 Aligned_cols=115 Identities=11% Similarity=0.140 Sum_probs=76.0
Q ss_pred eCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEe--cCHHHHhhH
Q psy6272 219 LMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKI--ETLLGMEYM 296 (547)
Q Consensus 219 L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakI--Et~~av~nl 296 (547)
++++-+|.+-.-.-.-..=.+.-.+.|....+.|+|.|-+. |.+.++++.++..-++. ++.++|-| .-+.|++
T Consensus 22 iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRva-v~~~~~a~al~~I~~~~--~iPlvADIHFd~~lAl~-- 96 (360)
T PRK00366 22 IGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVA-VPDMEAAAALPEIKKQL--PVPLVADIHFDYRLALA-- 96 (360)
T ss_pred ECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEc-cCCHHHHHhHHHHHHcC--CCCEEEecCCCHHHHHH--
Confidence 45555555443222111112334555677788999999887 67888888887776544 68999976 3333333
Q ss_pred HHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 297 DEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 297 deIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
.+=.-+|+|=|.||.++ ....--+.++++|+++|+|+=+...
T Consensus 97 -a~~~G~~~iRINPGNig------~~~~~v~~vv~~ak~~~ipIRIGvN 138 (360)
T PRK00366 97 -AAEAGADALRINPGNIG------KRDERVREVVEAAKDYGIPIRIGVN 138 (360)
T ss_pred -HHHhCCCEEEECCCCCC------chHHHHHHHHHHHHHCCCCEEEecC
Confidence 33334799999999995 3345567799999999999766543
No 164
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=75.98 E-value=25 Score=33.75 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=67.1
Q ss_pred CChhhHHHHHHHHHcCCcEEEE--cccCC--hhhHHHHHHHHHhcCCCceEEE--EecCHHHHhhHHHHHhh-cCEEEEc
Q psy6272 237 IADRDKHVVDLIVREAVDIIIM--SSVTG--ANSIREMRGMLEDHVDRVLILA--KIETLLGMEYMDEIIME-SDGVVLN 309 (547)
Q Consensus 237 lt~~D~~di~~~~~~g~d~I~~--sfV~s--a~di~~~r~~l~~~~~~i~Iia--kIEt~~av~nldeIl~~-~DgImIa 309 (547)
.+..+...+..++..++++|=+ ||+.+ .+.++.+++. ..+..+++ |+.+.. -..+++..+. +|++.+-
T Consensus 10 ~~~~~~~~~~~~l~~~i~~ieig~~~~~~~g~~~i~~i~~~----~~~~~i~~~~~v~~~~-~~~~~~~~~aGad~i~~h 84 (202)
T cd04726 10 LDLEEALELAKKVPDGVDIIEAGTPLIKSEGMEAVRALREA----FPDKIIVADLKTADAG-ALEAEMAFKAGADIVTVL 84 (202)
T ss_pred CCHHHHHHHHHHhhhcCCEEEcCCHHHHHhCHHHHHHHHHH----CCCCEEEEEEEecccc-HHHHHHHHhcCCCEEEEE
Confidence 4445555555555555998877 67543 2334444432 23456666 665542 1123555554 6888764
Q ss_pred CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 310 RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 310 rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
- +-+ +..-+++++.|+++|++++++. |+.... .++..+...|+|.+.+.
T Consensus 85 ~-----~~~----~~~~~~~i~~~~~~g~~~~v~~-----~~~~t~--------~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 85 G-----AAP----LSTIKKAVKAAKKYGKEVQVDL-----IGVEDP--------EKRAKLLKLGVDIVILH 133 (202)
T ss_pred e-----eCC----HHHHHHHHHHHHHcCCeEEEEE-----eCCCCH--------HHHHHHHHCCCCEEEEc
Confidence 1 111 1234568889999999999741 211223 55566777899998884
No 165
>PRK04302 triosephosphate isomerase; Provisional
Probab=75.93 E-value=42 Score=33.29 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=67.2
Q ss_pred HHHHHHcCCcEEEEcccCCh---hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCc-ccccCCh
Q psy6272 245 VDLIVREAVDIIIMSSVTGA---NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQ-LAVATSV 319 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa---~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargD-Lg~e~~~ 319 (547)
++.+.+.|+|+|+++.-+.. +++.+......+. .+..|.-+-+ .+.+..+... .|.|-+.+-+ .|...+.
T Consensus 78 ~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~--Gl~~I~~v~~---~~~~~~~~~~~~~~I~~~p~~~igt~~~~ 152 (223)
T PRK04302 78 PEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKL--GLESVVCVNN---PETSAAAAALGPDYVAVEPPELIGTGIPV 152 (223)
T ss_pred HHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHC--CCeEEEEcCC---HHHHHHHhcCCCCEEEEeCccccccCCCC
Confidence 67778899999999986333 4444444444433 4555544444 3344444444 3666555543 3433331
Q ss_pred H-HHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 320 E-VTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 320 e-~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
. ..+..-.++++..++. ++|++....+ ....|+..+...|+|+++..
T Consensus 153 ~~~~~~~i~~~~~~ir~~~~~~pvi~GggI--------------~~~e~~~~~~~~gadGvlVG 202 (223)
T PRK04302 153 SKAKPEVVEDAVEAVKKVNPDVKVLCGAGI--------------STGEDVKAALELGADGVLLA 202 (223)
T ss_pred CcCCHHHHHHHHHHHHhccCCCEEEEECCC--------------CCHHHHHHHHcCCCCEEEEe
Confidence 1 1122333455666653 6788875442 11267777788999999997
No 166
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=75.92 E-value=22 Score=38.48 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=55.6
Q ss_pred ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCCcccccC-----ChHHHHHHHHHHHHHH
Q psy6272 263 GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRIQLAVAT-----SVEVTFLAQKMIAARC 333 (547)
Q Consensus 263 sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIargDLg~e~-----~~e~v~~~qk~ii~~c 333 (547)
+-++++.+++.. +++|++| ++.+.++...+ +|+|+|+- -=|-.+ .++.++++++ ..
T Consensus 216 ~w~~i~~l~~~~-----~~PvivK-----Gv~~~eda~~a~~~Gvd~I~VS~-HGGrq~~~~~a~~~~L~ei~~----av 280 (367)
T TIGR02708 216 SPRDIEEIAGYS-----GLPVYVK-----GPQCPEDADRALKAGASGIWVTN-HGGRQLDGGPAAFDSLQEVAE----AV 280 (367)
T ss_pred CHHHHHHHHHhc-----CCCEEEe-----CCCCHHHHHHHHHcCcCEEEECC-cCccCCCCCCcHHHHHHHHHH----Hh
Confidence 447777777755 4678888 34444333333 58988763 112222 1233333221 11
Q ss_pred HHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 334 NKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 334 ~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
.-.+|+|....+- .- .|+..++..|||++|+. .....
T Consensus 281 -~~~i~vi~dGGIr------~g--------~Dv~KaLalGAd~V~ig-R~~l~ 317 (367)
T TIGR02708 281 -DKRVPIVFDSGVR------RG--------QHVFKALASGADLVALG-RPVIY 317 (367)
T ss_pred -CCCCcEEeeCCcC------CH--------HHHHHHHHcCCCEEEEc-HHHHH
Confidence 1238999876643 35 99999999999999998 66444
No 167
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=75.70 E-value=80 Score=34.34 Aligned_cols=123 Identities=14% Similarity=0.107 Sum_probs=76.9
Q ss_pred HHHHcCCcEEEE---cccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh--cCEEEEcCCcccc------
Q psy6272 247 LIVREAVDIIIM---SSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--SDGVVLNRIQLAV------ 315 (547)
Q Consensus 247 ~~~~~g~d~I~~---sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--~DgImIargDLg~------ 315 (547)
+.+..|.|.+.- +.+.+++++.+..+.|.+......|+.|+=..-..+.+...++. +|+|.|.=++=+.
T Consensus 178 r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~ 257 (392)
T cd02808 178 RGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLT 257 (392)
T ss_pred hCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCccc
Confidence 344556666553 34677788888877787766557888887543233344444444 5999987554222
Q ss_pred ---cCChHHHHHHHHHHHHHHHHc----CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchH
Q psy6272 316 ---ATSVEVTFLAQKMIAARCNKQ----GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQA 385 (547)
Q Consensus 316 ---e~~~e~v~~~qk~ii~~c~~~----gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta 385 (547)
+.|++.+ .+..++.+.+++. ..|++.+..+- -- .|++.++..|||+|.+. ....
T Consensus 258 ~~~~~g~pt~-~~L~~v~~~~~~~~~~~~i~viasGGI~------~g--------~Dv~kalaLGAd~V~ig-~~~l 318 (392)
T cd02808 258 FIDHVGLPTE-LGLARAHQALVKNGLRDRVSLIASGGLR------TG--------ADVAKALALGADAVGIG-TAAL 318 (392)
T ss_pred ccccCCccHH-HHHHHHHHHHHHcCCCCCCeEEEECCCC------CH--------HHHHHHHHcCCCeeeec-hHHH
Confidence 2233222 2333455555544 47888877743 24 89999999999999998 4433
No 168
>PLN02970 serine racemase
Probab=75.62 E-value=33 Score=36.15 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=74.2
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+.+|.|+.+. .|..+.. .-+.+.-..|++.+... + ...++.+...++.++ ...+|..+
T Consensus 90 lA~~a~~~G~~~~iv-----vp~~~~~--------~k~~~~~~~GA~Vi~~~-~-~~~~~~~~a~~la~~-~g~~~~~~- 152 (328)
T PLN02970 90 LALAAKLRGIPAYIV-----VPKNAPA--------CKVDAVIRYGGIITWCE-P-TVESREAVAARVQQE-TGAVLIHP- 152 (328)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHhcCCEEEEeC-C-CHHHHHHHHHHHHHh-cCCEEeCC-
Confidence 556799999999886 4443333 33455666799998876 4 333555555555443 11111111
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhc----CCCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVSKY----RPQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~isk~----RP~~pIiavt~~~ 471 (547)
|+ .+ ...+.-..-+.|+..++ ..++||+..-+|.+..-++++ .|...|++|-+..
T Consensus 153 ~~-------n~-~~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~ 212 (328)
T PLN02970 153 YN-------DG-RVISGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKG 212 (328)
T ss_pred CC-------Cc-chhhehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECC
Confidence 11 01 11222233466666666 479999999999998877765 8999999998854
No 169
>PLN02321 2-isopropylmalate synthase
Probab=75.44 E-value=1.1e+02 Score=35.70 Aligned_cols=150 Identities=8% Similarity=0.129 Sum_probs=88.8
Q ss_pred CCChhhHHHH-HHHHHcCCcEEEEcc-cCChhhHHHHHHHHHhcCCCc---eEEEEec-----CHHHHhhHHHHHhh---
Q psy6272 236 VIADRDKHVV-DLIVREAVDIIIMSS-VTGANSIREMRGMLEDHVDRV---LILAKIE-----TLLGMEYMDEIIME--- 302 (547)
Q Consensus 236 ~lt~~D~~di-~~~~~~g~d~I~~sf-V~sa~di~~~r~~l~~~~~~i---~IiakIE-----t~~av~nldeIl~~--- 302 (547)
.+|.+++..| +...+.|+|.|=+.| .-|+.|.+.++.+.......+ ..+++|- +.+.++ ..++.
T Consensus 104 ~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~dId---~A~~al~~ 180 (632)
T PLN02321 104 TLTSKEKLDIARQLAKLGVDIIEAGFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKKDID---AAWEAVKH 180 (632)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHHhHH---HHHHHhcC
Confidence 3566666555 566679999998866 677778888777654321111 1112221 233333 33332
Q ss_pred c----CEEEEcCCcccc----cCChHHHHHHHHHHHHHHHHcCCc-EEEEcCCCCCCCcccccccCccchhhHH-HHHHh
Q psy6272 303 S----DGVVLNRIQLAV----ATSVEVTFLAQKMIAARCNKQGKP-FLVVGDILPDHNVEEYSDVSIGDMNDVN-SIVQD 372 (547)
Q Consensus 303 ~----DgImIargDLg~----e~~~e~v~~~qk~ii~~c~~~gKP-vi~aTq~Le~PtraE~~~~~~~~~~Dv~-nav~~ 372 (547)
+ =.++++-.|+-+ -+..+++...-+.+++.|+.+|.. |.+..+ +-+|++. .++-.++ .++..
T Consensus 181 a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~E---Da~rtd~-----d~l~~~~~~a~~a 252 (632)
T PLN02321 181 AKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPE---DAGRSDP-----EFLYRILGEVIKA 252 (632)
T ss_pred CCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecc---cCCCCCH-----HHHHHHHHHHHHc
Confidence 1 246666666532 234577777778899999999985 666544 5556554 1123344 35667
Q ss_pred CccEEeeCCcchHH-----HHHHHHHHHHHH
Q psy6272 373 GADVVVLTQSEQAH-----HRVDILKEILKK 398 (547)
Q Consensus 373 g~D~vmLsk~Eta~-----eaV~~m~~I~~~ 398 (547)
|+|.+.|. +|.= +.-+++..+.++
T Consensus 253 Ga~~I~L~--DTvG~~~P~~v~~li~~l~~~ 281 (632)
T PLN02321 253 GATTLNIP--DTVGYTLPSEFGQLIADIKAN 281 (632)
T ss_pred CCCEEEec--ccccCCCHHHHHHHHHHHHHh
Confidence 99999997 6654 554555555443
No 170
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=75.44 E-value=5.2 Score=42.76 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=43.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhC--CcEEeec-cCCCHHHHHHHHHHHHHHH
Q psy6272 55 TNIMATVGENNNSVDLIKLMLRSG--VNILRIP-THSSKLYQVEKILKNVKLA 104 (547)
Q Consensus 55 tkIi~TiGpas~~~e~l~~li~aG--m~v~RiN-sHg~~e~~~~~~i~~ir~a 104 (547)
-.+.+++|-..++.|.+++|+++| .|+.=|+ |||..+...+ +|+.||+.
T Consensus 96 ~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~~~i~-~ik~ir~~ 147 (343)
T TIGR01305 96 QNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSEHFVE-FVKLVREA 147 (343)
T ss_pred ceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHH-HHHHHHhh
Confidence 456668999999999999999996 9999999 9999998888 88888873
No 171
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=75.16 E-value=1.1e+02 Score=32.08 Aligned_cols=122 Identities=14% Similarity=0.264 Sum_probs=76.0
Q ss_pred HHHHHHcCCcEEEE--------------cccCChhhHHHHHHHHHhcCCCceEEEEecCHHH-HhhHHHHHhh-cCEEEE
Q psy6272 245 VDLIVREAVDIIIM--------------SSVTGANSIREMRGMLEDHVDRVLILAKIETLLG-MEYMDEIIME-SDGVVL 308 (547)
Q Consensus 245 i~~~~~~g~d~I~~--------------sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a-v~nldeIl~~-~DgImI 308 (547)
-+.|-+.|+-.|+. .=.+++++|+++++.. +++||+|+- .+ +...+.+.+. +|.|
T Consensus 23 a~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V-----~iPVig~~k--igh~~Ea~~L~~~GvDiI-- 93 (287)
T TIGR00343 23 AKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAV-----SIPVMAKVR--IGHFVEAQILEALGVDYI-- 93 (287)
T ss_pred HHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhC-----CCCEEEEee--ccHHHHHHHHHHcCCCEE--
Confidence 45566777777766 3345666666666654 688888763 23 5555555555 6877
Q ss_pred cCCcccccC--ChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 309 NRIQLAVAT--SVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 309 argDLg~e~--~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
| ..+. |.+++...-| ++++.|+.+-.- .+ .+.-+++..|+|.+--. +|--.
T Consensus 94 ---D-eTe~lrPade~~~~~K------~~f~vpfmad~~--------~l--------~EAlrai~~GadmI~Tt-~e~gT 146 (287)
T TIGR00343 94 ---D-ESEVLTPADWTFHIDK------KKFKVPFVCGAR--------DL--------GEALRRINEGAAMIRTK-GEAGT 146 (287)
T ss_pred ---E-ccCCCCcHHHHHHHHH------HHcCCCEEccCC--------CH--------HHHHHHHHCCCCEEecc-ccCCC
Confidence 4 2221 2233322222 235888775211 23 77789999999999776 65322
Q ss_pred ----HHHHHHHHHHHHhhhh
Q psy6272 387 ----HRVDILKEILKKTESV 402 (547)
Q Consensus 387 ----eaV~~m~~I~~~aE~~ 402 (547)
|||+-|+.+-.++...
T Consensus 147 g~v~~av~hlr~~~~~~~~~ 166 (287)
T TIGR00343 147 GNIVEAVRHMRKINEEIRQI 166 (287)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 9999999998887654
No 172
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=75.15 E-value=13 Score=33.73 Aligned_cols=69 Identities=25% Similarity=0.322 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 265 NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 265 ~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
.-++.+++.|.+.+....+.+.-+ .-.-++++++++-+|.|+.+-.++. ....+-+.|+++++|+|.++
T Consensus 56 ~Ka~~~~~~l~~~np~~~v~~~~~-~~~~~~~~~~~~~~d~vi~~~d~~~----------~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 56 NKAEAAKERLQEINPDVEVEAIPE-KIDEENIEELLKDYDIVIDCVDSLA----------ARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp BHHHHHHHHHHHHSTTSEEEEEES-HCSHHHHHHHHHTSSEEEEESSSHH----------HHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHhcCceeeeeeec-ccccccccccccCCCEEEEecCCHH----------HHHHHHHHHHHcCCCEEEEE
Confidence 456778888888888888776433 3355788999988999988865533 45567779999999999864
No 173
>PLN02417 dihydrodipicolinate synthase
Probab=74.88 E-value=29 Score=35.76 Aligned_cols=96 Identities=9% Similarity=0.097 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCcEEEEccc------CChhh-HHHHHHHHHhcCCCceEEEEec---CHHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMSSV------TGANS-IREMRGMLEDHVDRVLILAKIE---TLLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV------~sa~d-i~~~r~~l~~~~~~i~IiakIE---t~~av~nldeIl~~-~DgImIar 310 (547)
.+.+++.++.|+++|++.=- -|.++ .+-++...+..+.++.|++.+= |.++++....--+. +|++|+.+
T Consensus 25 ~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~Gadav~~~~ 104 (280)
T PLN02417 25 DSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHAALHIN 104 (280)
T ss_pred HHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcCCCEEEEcC
Confidence 45578999999999987422 22333 3333444555567789999875 45666655554444 69999998
Q ss_pred CcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 311 IQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 311 gDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-...- .+.+.+...-+.+.+. . |+++-
T Consensus 105 P~y~~-~~~~~i~~~f~~va~~----~-pi~lY 131 (280)
T PLN02417 105 PYYGK-TSQEGLIKHFETVLDM----G-PTIIY 131 (280)
T ss_pred CccCC-CCHHHHHHHHHHHHhh----C-CEEEE
Confidence 87642 3456666666666553 3 98764
No 174
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=74.62 E-value=26 Score=36.01 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=70.8
Q ss_pred HHHHcCCcEEEEcccC-----------ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccc
Q psy6272 247 LIVREAVDIIIMSSVT-----------GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAV 315 (547)
Q Consensus 247 ~~~~~g~d~I~~sfV~-----------sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~ 315 (547)
..-+.|+.++.-+--. ..+.++.++++.++ ..+.+++-+-+.+.++-+.+ .+|.+-||-+++.-
T Consensus 37 ~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~--~Gl~~~Tev~d~~~v~~~~e---~vdilqIgs~~~~n 111 (250)
T PRK13397 37 SAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQE--FGLLSVSEIMSERQLEEAYD---YLDVIQVGARNMQN 111 (250)
T ss_pred HHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHH--cCCCEEEeeCCHHHHHHHHh---cCCEEEECcccccC
Confidence 4455777776643221 12345555555544 35788888877777766655 69999999777653
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHH-hCccEEeeC
Q psy6272 316 ATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQ-DGADVVVLT 380 (547)
Q Consensus 316 e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~-~g~D~vmLs 380 (547)
..++.++-+.||||++.|.++ +|-.|+ -.++..+. .|..-++|-
T Consensus 112 -----------~~LL~~va~tgkPVilk~G~~--~t~~e~--------~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 112 -----------FEFLKTLSHIDKPILFKRGLM--ATIEEY--------LGALSYLQDTGKSNIILC 156 (250)
T ss_pred -----------HHHHHHHHccCCeEEEeCCCC--CCHHHH--------HHHHHHHHHcCCCeEEEE
Confidence 446677778899999999853 344455 66666665 466556665
No 175
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=74.20 E-value=55 Score=36.03 Aligned_cols=140 Identities=13% Similarity=0.100 Sum_probs=86.9
Q ss_pred CCCChhhHHHHHHHHH-cCCcEEEEcccCChhhHHHHHHHHH-hcCCCceEEEEecC-HHHHh-hHHHHHhh-cC--EEE
Q psy6272 235 PVIADRDKHVVDLIVR-EAVDIIIMSSVTGANSIREMRGMLE-DHVDRVLILAKIET-LLGME-YMDEIIME-SD--GVV 307 (547)
Q Consensus 235 p~lt~~D~~di~~~~~-~g~d~I~~sfV~sa~di~~~r~~l~-~~~~~i~IiakIEt-~~av~-nldeIl~~-~D--gIm 307 (547)
-.+|-+++..|...|+ .|+|+|=+.|-.+.+...+..+.+. ..+. .+-+++-. ...++ .++.++.. .| .++
T Consensus 19 ~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if 96 (409)
T COG0119 19 VSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEKAGL--FICALIAALARAIKRDIEALLEAGVDRIHIF 96 (409)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHHHHHHHHhcCc--ccchhhhhhHHhHHhhHHHHHhCCCCEEEEE
Confidence 3456677777765554 9999998887765554444444443 2222 22233221 12223 45566655 46 589
Q ss_pred EcCCcccccCCh----HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHH-HhCccEEeeCCc
Q psy6272 308 LNRIQLAVATSV----EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIV-QDGADVVVLTQS 382 (547)
Q Consensus 308 IargDLg~e~~~----e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav-~~g~D~vmLsk~ 382 (547)
++-.|+-++..+ +++...-+..++.++.+|.++..... +-+|.+. ...-+++.++ ..|++.+-|.
T Consensus 97 ~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~E---d~~rt~~-----~~l~~~~~~~~~~ga~~i~l~-- 166 (409)
T COG0119 97 IATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAE---DATRTDP-----EFLAEVVKAAIEAGADRINLP-- 166 (409)
T ss_pred EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEee---ccccCCH-----HHHHHHHHHHHHcCCcEEEEC--
Confidence 998988776655 67777778899999999988876333 5666665 1224445444 4559999996
Q ss_pred chHH
Q psy6272 383 EQAH 386 (547)
Q Consensus 383 Eta~ 386 (547)
+|.=
T Consensus 167 DTvG 170 (409)
T COG0119 167 DTVG 170 (409)
T ss_pred CCcC
Confidence 5543
No 176
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=74.17 E-value=87 Score=33.04 Aligned_cols=127 Identities=17% Similarity=0.179 Sum_probs=67.8
Q ss_pred CCChhhHHHH--------HHHHHcCCcEEEEcc-------------cCChhh-------------HHHHHHHHHhcCCCc
Q psy6272 236 VIADRDKHVV--------DLIVREAVDIIIMSS-------------VTGANS-------------IREMRGMLEDHVDRV 281 (547)
Q Consensus 236 ~lt~~D~~di--------~~~~~~g~d~I~~sf-------------V~sa~d-------------i~~~r~~l~~~~~~i 281 (547)
.+|+.|++.+ +.+.+.|+|+|=+.. .+...| ++-++..-+..|.+.
T Consensus 143 ~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~ 222 (336)
T cd02932 143 ELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDK 222 (336)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 5788887766 477889999996642 333332 222222222335677
Q ss_pred eEEEEecC----------HHHHhhHHHHHhh-cCEEEEcCCcccccC--Ch---HHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 282 LILAKIET----------LLGMEYMDEIIME-SDGVVLNRIQLAVAT--SV---EVTFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 282 ~IiakIEt----------~~av~nldeIl~~-~DgImIargDLg~e~--~~---e~v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
.|..||=- .++++-+..+-+. .|.|=|..|...... +. ..+..+ + ...+..++||+....
T Consensus 223 ~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~-~---~ir~~~~iPVi~~G~ 298 (336)
T cd02932 223 PLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFA-E---RIRQEAGIPVIAVGL 298 (336)
T ss_pred eEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHH-H---HHHhhCCCCEEEeCC
Confidence 78888541 1222222222222 466766655432211 11 111111 1 223445899998655
Q ss_pred CCCCCCcccccccCccchhhHHHHHHhC-ccEEeeC
Q psy6272 346 ILPDHNVEEYSDVSIGDMNDVNSIVQDG-ADVVVLT 380 (547)
Q Consensus 346 ~Le~PtraE~~~~~~~~~~Dv~nav~~g-~D~vmLs 380 (547)
+. + . .|+..++..| +|.|++.
T Consensus 299 i~---t---~--------~~a~~~l~~g~aD~V~~g 320 (336)
T cd02932 299 IT---D---P--------EQAEAILESGRADLVALG 320 (336)
T ss_pred CC---C---H--------HHHHHHHHcCCCCeehhh
Confidence 32 1 2 5566678888 9999997
No 177
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=73.88 E-value=40 Score=32.46 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=59.0
Q ss_pred HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHh----hcCEEEEcCCcccc----
Q psy6272 244 VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIM----ESDGVVLNRIQLAV---- 315 (547)
Q Consensus 244 di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~----~~DgImIargDLg~---- 315 (547)
+++.+.+.|+|+|.++.-. .....++... +....+-+-.- +.+|+.. -+|.|.+++-.-+.
T Consensus 73 ~~~~a~~~gad~vh~~~~~--~~~~~~~~~~---~~~~~~g~~~~------t~~e~~~a~~~gaD~v~~~~~~~~~~~~~ 141 (212)
T PRK00043 73 RVDLALAVGADGVHLGQDD--LPVADARALL---GPDAIIGLSTH------TLEEAAAALAAGADYVGVGPIFPTPTKKD 141 (212)
T ss_pred hHHHHHHcCCCEEecCccc--CCHHHHHHHc---CCCCEEEEeCC------CHHHHHHHhHcCCCEEEECCccCCCCCCC
Confidence 4678899999999987532 2234444332 22333333222 3333333 36999987543332
Q ss_pred ---cCChHHHHHHHHHHHHHHHHcC-CcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 316 ---ATSVEVTFLAQKMIAARCNKQG-KPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 316 ---e~~~e~v~~~qk~ii~~c~~~g-KPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
..|++.+..+. .... .|++....+ + . .++..+...|+|++.+.
T Consensus 142 ~~~~~g~~~~~~~~-------~~~~~~~v~a~GGI----~---~--------~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 142 AKAPQGLEGLREIR-------AAVGDIPIVAIGGI----T---P--------ENAPEVLEAGADGVAVV 188 (212)
T ss_pred CCCCCCHHHHHHHH-------HhcCCCCEEEECCc----C---H--------HHHHHHHHcCCCEEEEe
Confidence 12233333322 2223 899887663 1 2 56677788899999986
No 178
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=73.62 E-value=22 Score=34.59 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCcEEEE-----cccCC----hhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCC
Q psy6272 242 KHVVDLIVREAVDIIIM-----SSVTG----ANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRI 311 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~-----sfV~s----a~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIarg 311 (547)
.+.++.+.+.|+|+|.+ +|+.+ .+.++++++.. .....+-.++- ...+.++.+.+. +||+.+--+
T Consensus 19 ~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~v~--d~~~~i~~~~~~g~d~v~vh~~ 93 (220)
T PRK05581 19 GEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVT---KLPLDVHLMVE--NPDRYVPDFAKAGADIITFHVE 93 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcC---CCcEEEEeeeC--CHHHHHHHHHHcCCCEEEEeec
Confidence 45678899999999999 98854 34444444322 11222323443 334456666655 699666532
Q ss_pred cccccCChHHHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 312 QLAVATSVEVTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 312 DLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
. .+ .....++.+++.|..+++++
T Consensus 94 ~------~~----~~~~~~~~~~~~~~~~g~~~ 116 (220)
T PRK05581 94 A------SE----HIHRLLQLIKSAGIKAGLVL 116 (220)
T ss_pred c------ch----hHHHHHHHHHHcCCEEEEEE
Confidence 1 11 12345788899999888865
No 179
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=73.58 E-value=36 Score=34.94 Aligned_cols=117 Identities=19% Similarity=0.207 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEE--EcCCcccccCCh-
Q psy6272 243 HVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVV--LNRIQLAVATSV- 319 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgIm--IargDLg~e~~~- 319 (547)
.-++.+.+.|+|++++|=.- .++.+.+.+.+.+.|-.. |.-+=...--+.+..|.+.+.|.+ +++ .|+ .|.
T Consensus 108 ~f~~~~~~aGvdGviipDLp-~ee~~~~~~~~~~~gl~~--I~lvap~t~~eri~~i~~~s~gfIY~vs~--~Gv-TG~~ 181 (258)
T PRK13111 108 RFAADAAEAGVDGLIIPDLP-PEEAEELRAAAKKHGLDL--IFLVAPTTTDERLKKIASHASGFVYYVSR--AGV-TGAR 181 (258)
T ss_pred HHHHHHHHcCCcEEEECCCC-HHHHHHHHHHHHHcCCcE--EEEeCCCCCHHHHHHHHHhCCCcEEEEeC--CCC-CCcc
Confidence 44778889999999998653 467777777777665432 222212222567888888887755 444 332 222
Q ss_pred HHHHHHHHHHHHHHHHc-CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 320 EVTFLAQKMIAARCNKQ-GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 320 e~v~~~qk~ii~~c~~~-gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
...+......++.++++ ++|+++...+ -++ .|+..+.. +||++...
T Consensus 182 ~~~~~~~~~~i~~vk~~~~~pv~vGfGI---~~~-----------e~v~~~~~-~ADGviVG 228 (258)
T PRK13111 182 SADAADLAELVARLKAHTDLPVAVGFGI---STP-----------EQAAAIAA-VADGVIVG 228 (258)
T ss_pred cCCCccHHHHHHHHHhcCCCcEEEEccc---CCH-----------HHHHHHHH-hCCEEEEc
Confidence 12223334455556554 8999997662 222 55666654 59999997
No 180
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=73.50 E-value=1.4e+02 Score=32.29 Aligned_cols=138 Identities=13% Similarity=0.113 Sum_probs=79.4
Q ss_pred CCChhhHHHH-HHHHHcCCcEEEEcccCCh-hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCE--EEEcC
Q psy6272 236 VIADRDKHVV-DLIVREAVDIIIMSSVTGA-NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDG--VVLNR 310 (547)
Q Consensus 236 ~lt~~D~~di-~~~~~~g~d~I~~sfV~sa-~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~Dg--ImIar 310 (547)
.+|.+++..| +...+.|+|.|=+.|-... ++.+.++.+.. .+.+..+++-.-. -.+.++..++. .|. +++.-
T Consensus 22 ~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~~~~e~i~~i~~-~~~~~~i~~~~r~--~~~di~~a~~~g~~~i~i~~~~ 98 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAGFPAVSEDEKEAIKAIAK-LGLNASILALNRA--VKSDIDASIDCGVDAVHIFIAT 98 (378)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEeCCCcChHHHHHHHHHHh-cCCCeEEEEEccc--CHHHHHHHHhCCcCEEEEEEcC
Confidence 4556666555 4556699999877654433 44455555443 4555556555322 13344444444 453 44444
Q ss_pred Cccc----ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH-HHHHhCccEEeeCCcchH
Q psy6272 311 IQLA----VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN-SIVQDGADVVVLTQSEQA 385 (547)
Q Consensus 311 gDLg----~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~-nav~~g~D~vmLsk~Eta 385 (547)
.|+- .....++.....+..++.|++.|..|.+... +-+|++. .++.+++ .+...|+|.+.|. +|.
T Consensus 99 Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e---d~~r~~~-----~~l~~~~~~~~~~Ga~~I~l~--DT~ 168 (378)
T PRK11858 99 SDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE---DASRTDL-----DFLIEFAKAAEEAGADRVRFC--DTV 168 (378)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec---cCCCCCH-----HHHHHHHHHHHhCCCCEEEEe--ccC
Confidence 4531 1233456666667799999999998887533 4455443 1124444 3455799999997 555
Q ss_pred H
Q psy6272 386 H 386 (547)
Q Consensus 386 ~ 386 (547)
=
T Consensus 169 G 169 (378)
T PRK11858 169 G 169 (378)
T ss_pred C
Confidence 4
No 181
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=73.48 E-value=34 Score=34.09 Aligned_cols=104 Identities=12% Similarity=0.155 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCChHH
Q psy6272 243 HVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSVEV 321 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~~e~ 321 (547)
...+..++.|+..|-+++ ++++-.+.++++.++. .++.|=| =|..-.+..++.+.. ++-| |+|+-
T Consensus 24 ~~~~al~~~Gi~~iEit~-~t~~a~~~i~~l~~~~-~~~~vGA--GTVl~~~~a~~a~~aGA~Fi-vsP~~--------- 89 (204)
T TIGR01182 24 PLAKALIEGGLRVLEVTL-RTPVALDAIRLLRKEV-PDALIGA--GTVLNPEQLRQAVDAGAQFI-VSPGL--------- 89 (204)
T ss_pred HHHHHHHHcCCCEEEEeC-CCccHHHHHHHHHHHC-CCCEEEE--EeCCCHHHHHHHHHcCCCEE-ECCCC---------
Confidence 445677788999999998 7777777676665543 3444333 244444445555555 4444 55442
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 322 TFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 322 v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
...+++.|+++|+|++-..- . - +++..|...|+|.+=+-
T Consensus 90 ----~~~v~~~~~~~~i~~iPG~~---T-----p--------tEi~~A~~~Ga~~vKlF 128 (204)
T TIGR01182 90 ----TPELAKHAQDHGIPIIPGVA---T-----P--------SEIMLALELGITALKLF 128 (204)
T ss_pred ----CHHHHHHHHHcCCcEECCCC---C-----H--------HHHHHHHHCCCCEEEEC
Confidence 34689999999999885311 1 2 67789999999999876
No 182
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=73.45 E-value=37 Score=34.81 Aligned_cols=119 Identities=16% Similarity=0.175 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHH
Q psy6272 328 MIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 328 ~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
.+...|+..|.++++. .|..... .-+...-..|++.+... ++ -.++++...++.++-. .+|..+
T Consensus 79 alA~~a~~~G~~~~iv-----vp~~~~~--------~k~~~l~~~Ga~vi~~~-~~-~~~~~~~a~~la~~~~-~~~~~~ 142 (304)
T cd01562 79 GVAYAAKLLGIPATIV-----MPETAPA--------AKVDATRAYGAEVVLYG-ED-FDEAEAKARELAEEEG-LTFIHP 142 (304)
T ss_pred HHHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHHcCCEEEEeC-CC-HHHHHHHHHHHHHhcC-CEEeCC
Confidence 3667899999999886 3332222 33445666799988887 54 3356555555544421 111111
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHhc----CCCCCEEEEeCch
Q psy6272 408 VFEDLCALACPPLDPAHSIVIACVNAALKCQ-AVAIIVITCSGYSAKLVSKY----RPQCPILAVSSLG 471 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~-a~aIvv~T~sG~tA~~isk~----RP~~pIiavt~~~ 471 (547)
|. .+ .....-...+.|+..+++ .+.||+.+-||.|..-++++ .|...|+++.+..
T Consensus 143 -~~-------n~-~~~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~ 202 (304)
T cd01562 143 -FD-------DP-DVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEG 202 (304)
T ss_pred -CC-------Cc-chhccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 11 111222344667777664 79999999999988766554 7889999999953
No 183
>PLN03013 cysteine synthase
Probab=73.40 E-value=28 Score=38.53 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=72.6
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcch-HHHHHHHHHHHHHHhhhhhhhHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQ-AHHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Et-a~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
+...|+.+|.|+++. .|..+.. .-+...-..||+.++.. +.. ..++++...+++++....++-.+
T Consensus 190 LA~~a~~~G~~~~Vv-----vP~~~s~--------~K~~~ira~GAeVi~v~-~~~~~~~a~~~A~ela~~~~g~~~~~q 255 (429)
T PLN03013 190 LAFIAASRGYRLILT-----MPASMSM--------ERRVLLKAFGAELVLTD-PAKGMTGAVQKAEEILKNTPDAYMLQQ 255 (429)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCcH--------HHHHHHHHcCCEEEEEC-CCCChHHHHHHHHHHHhhcCCeEeCCC
Confidence 445789999999986 4544333 34445556799999886 432 22566666666554322222111
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCchh
Q psy6272 408 VFEDLCALACPPLDPAHSIVIACVNAALKC--QAVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLGY 472 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~ia~aav~~a~~~--~a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~~ 472 (547)
|+ .+..+..-...-+-|+.+++ +.++||+-.-+|.+..-++ +++|++.|++|-+...
T Consensus 256 -y~-------Np~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs 318 (429)
T PLN03013 256 -FD-------NPANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTES 318 (429)
T ss_pred -CC-------CHHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCC
Confidence 10 01111101122345565555 5899999999997765444 4579999999999653
No 184
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=73.39 E-value=37 Score=35.12 Aligned_cols=96 Identities=15% Similarity=0.185 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCcEEEEc------ccCChhhHHHH-HHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-----cCEEEEc
Q psy6272 242 KHVVDLIVREAVDIIIMS------SVTGANSIREM-RGMLEDHVDRVLILAKIETLLGMEYMDEIIME-----SDGVVLN 309 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~s------fV~sa~di~~~-r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-----~DgImIa 309 (547)
...+++.++.|+|+|++. +--|.++-.++ +...+..+.++.||+.+- . +.+..-+.++. +|++|+.
T Consensus 24 ~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~-~-~t~~~i~~a~~a~~~Gad~v~~~ 101 (289)
T cd00951 24 RAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG-Y-GTATAIAYAQAAEKAGADGILLL 101 (289)
T ss_pred HHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC-C-CHHHHHHHHHHHHHhCCCEEEEC
Confidence 445789999999999875 22334444444 444555566788999884 2 44433333333 5999998
Q ss_pred CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 310 RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 310 rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
+--..- .+.+.+...-+.+.+ +.+.|+++-
T Consensus 102 pP~y~~-~~~~~i~~~f~~v~~---~~~~pi~lY 131 (289)
T cd00951 102 PPYLTE-APQEGLYAHVEAVCK---STDLGVIVY 131 (289)
T ss_pred CCCCCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 766532 344666666665644 568999885
No 185
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=73.36 E-value=61 Score=32.20 Aligned_cols=120 Identities=13% Similarity=0.227 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCH------HHH-----hhHHHHHhh-----c
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETL------LGM-----EYMDEIIME-----S 303 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~------~av-----~nldeIl~~-----~ 303 (547)
.+.++++.+++.|+|.|++.--- .++...+.++....+.+ .|+.-|... .|. .+..+++.. +
T Consensus 86 ~~~~~~~~~~~~Ga~~v~iGs~~-~~~~~~~~~i~~~~g~~-~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~ 163 (241)
T PRK13585 86 RSAEDAASLLDLGVDRVILGTAA-VENPEIVRELSEEFGSE-RVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGA 163 (241)
T ss_pred CCHHHHHHHHHcCCCEEEEChHH-hhChHHHHHHHHHhCCC-cEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCC
Confidence 46788899999999998886432 22233344444333322 233322210 010 022233322 4
Q ss_pred CEEEEcCCcc-cccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 304 DGVVLNRIQL-AVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 304 DgImIargDL-g~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
|.|++---+- +..-| ..+. .+-+.++....|++.+..+- .. .|+......|+|++++.
T Consensus 164 ~~i~~~~~~~~g~~~g-~~~~----~i~~i~~~~~iPvia~GGI~------~~--------~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 164 GSILFTNVDVEGLLEG-VNTE----PVKELVDSVDIPVIASGGVT------TL--------DDLRALKEAGAAGVVVG 222 (241)
T ss_pred CEEEEEeecCCCCcCC-CCHH----HHHHHHHhCCCCEEEeCCCC------CH--------HHHHHHHHcCCCEEEEE
Confidence 7777632211 11111 1111 12334555689999988743 12 66667777899999997
No 186
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=73.23 E-value=23 Score=36.07 Aligned_cols=94 Identities=9% Similarity=0.049 Sum_probs=62.4
Q ss_pred HHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh--cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCC
Q psy6272 270 MRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDIL 347 (547)
Q Consensus 270 ~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~L 347 (547)
+++.|.+...-...+.++=++..++- +.. .|.|+|. +|=+.-....++. ++..|+..|..+++
T Consensus 3 lk~~l~~g~~~~g~~~~~~~p~~~e~----~~~~g~D~v~iD-----lEH~~~~~~~~~~-~~~a~~~~g~~~~V----- 67 (249)
T TIGR02311 3 FKQALKEGQPQIGLWLGLADPYAAEI----CAGAGFDWLLID-----GEHAPNDVRTILS-QLQALAPYPSSPVV----- 67 (249)
T ss_pred HHHHHHCCCceEEEEEeCCCcHHHHH----HHhcCCCEEEEe-----ccCCCCCHHHHHH-HHHHHHhcCCCcEE-----
Confidence 55566542222446667666655543 333 6999987 3333334444444 77888888988887
Q ss_pred CCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHH
Q psy6272 348 PDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHH 387 (547)
Q Consensus 348 e~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~e 387 (547)
+....+- .++..++..|+|+||+.|-+|+-+
T Consensus 68 -Rv~~~~~--------~~i~~~Ld~Ga~gIivP~v~s~e~ 98 (249)
T TIGR02311 68 -RPAIGDP--------VLIKQLLDIGAQTLLVPMIETAEQ 98 (249)
T ss_pred -ECCCCCH--------HHHHHHhCCCCCEEEecCcCCHHH
Confidence 4443444 788999999999999998887764
No 187
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=73.20 E-value=21 Score=36.70 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=54.9
Q ss_pred hhhHHHH-HHH-HHcCCcEEEEcccCC--hhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcC----
Q psy6272 239 DRDKHVV-DLI-VREAVDIIIMSSVTG--ANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNR---- 310 (547)
Q Consensus 239 ~~D~~di-~~~-~~~g~d~I~~sfV~s--a~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIar---- 310 (547)
+.+.++. +.+ -..++|+|++|=-.+ +.+...+++.-+... +.++. =|---.+|+.++++.+||++||-
T Consensus 157 ~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~--~PVlv--GSGvt~~Ni~~~l~~ADG~IVGS~~K~ 232 (254)
T PF03437_consen 157 TRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVP--VPVLV--GSGVTPENIAEYLSYADGAIVGSYFKK 232 (254)
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC--CCEEE--ecCCCHHHHHHHHHhCCEEEEeeeeee
Confidence 3344333 334 357899999998876 335554444333222 55653 34445689999999999999995
Q ss_pred -CcccccCChHHHHHHHH
Q psy6272 311 -IQLAVATSVEVTFLAQK 327 (547)
Q Consensus 311 -gDLg~e~~~e~v~~~qk 327 (547)
|+..-.+..+++....+
T Consensus 233 ~G~~~n~VD~~Rv~~fm~ 250 (254)
T PF03437_consen 233 DGKWENPVDPERVRRFME 250 (254)
T ss_pred CCEeCCcCCHHHHHHHHH
Confidence 66666677777655443
No 188
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=72.94 E-value=32 Score=35.39 Aligned_cols=98 Identities=18% Similarity=0.236 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCcEEEEcc-------cCChhhHHHHHHHHHhcCCCceEEEEec---CHHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMSS-------VTGANSIREMRGMLEDHVDRVLILAKIE---TLLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf-------V~sa~di~~~r~~l~~~~~~i~IiakIE---t~~av~nldeIl~~-~DgImIar 310 (547)
...+++.++.|+++|++.- ....|-.+-++...+....++.|++.+= +.++++.....-+. +|++|+.+
T Consensus 25 ~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d~v~~~p 104 (292)
T PRK03170 25 RKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGADGALVVT 104 (292)
T ss_pred HHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCCEEEECC
Confidence 4557899999999998642 2222333333444454556788888874 34455544444443 69999977
Q ss_pred CcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 311 IQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 311 gDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-.+.. .+.+.+...-+.|++ +.+.|+++-
T Consensus 105 P~~~~-~~~~~i~~~~~~ia~---~~~~pv~lY 133 (292)
T PRK03170 105 PYYNK-PTQEGLYQHFKAIAE---ATDLPIILY 133 (292)
T ss_pred CcCCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 66532 344566666665654 457999875
No 189
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=72.78 E-value=40 Score=33.74 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=63.5
Q ss_pred HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEE--ecCHHHHhhHHHHH-hhcCEEEEcCCcccccCChHH
Q psy6272 245 VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAK--IETLLGMEYMDEII-MESDGVVLNRIQLAVATSVEV 321 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~Iiak--IEt~~av~nldeIl-~~~DgImIargDLg~e~~~e~ 321 (547)
++.|++.|+|+|.++- +-.++..+|+.+. .+ .+|.- .-+.+ ...+-. .-+|.|.+|+- +. ......
T Consensus 80 ~dlA~~~~adGVHLg~--~d~~~~~~r~~~~---~~-~iiG~s~~~s~~---~a~~A~~~gaDYv~~Gpv-~t-~tK~~~ 148 (221)
T PRK06512 80 SRIAGRVKADGLHIEG--NLAALAEAIEKHA---PK-MIVGFGNLRDRH---GAMEIGELRPDYLFFGKL-GA-DNKPEA 148 (221)
T ss_pred HHHHHHhCCCEEEECc--cccCHHHHHHhcC---CC-CEEEecCCCCHH---HHHHhhhcCCCEEEECCC-CC-CCCCCC
Confidence 6778889999999983 3345777777664 22 23332 22222 222211 22699999986 32 111110
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 322 TFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 322 v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
-+.--..+-+.|+..++||+.-..|- . .++......|+|++-+.
T Consensus 149 ~p~gl~~l~~~~~~~~iPvvAIGGI~-------~--------~n~~~~~~~GA~giAvi 192 (221)
T PRK06512 149 HPRNLSLAEWWAEMIEIPCIVQAGSD-------L--------ASAVEVAETGAEFVALE 192 (221)
T ss_pred CCCChHHHHHHHHhCCCCEEEEeCCC-------H--------HHHHHHHHhCCCEEEEh
Confidence 00001112245677899998766542 2 66677788899999987
No 190
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=72.77 E-value=28 Score=35.74 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=63.8
Q ss_pred HHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh--cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCC
Q psy6272 269 EMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDI 346 (547)
Q Consensus 269 ~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~ 346 (547)
.+++.|.+...-+..+.++-++... ||+.. .|.|+|. +|-+.-.+..++ .++.+|+..|.+.++
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~----e~~a~~G~D~v~iD-----~EHg~~~~~~~~-~~i~a~~~~g~~~lV---- 74 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITT----EVLGLAGFDWLVLD-----GEHAPNDVSTFI-PQLMALKGSASAPVV---- 74 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHH----HHHHhcCCCEEEEc-----cccCCCCHHHHH-HHHHHHhhcCCCcEE----
Confidence 3566665432334566676666554 45555 4999987 455544455554 488899999999998
Q ss_pred CCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 347 LPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 347 Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
+....+- ..+..++..|+++||+.--+|+-
T Consensus 75 --Rvp~~~~--------~~i~r~LD~Ga~giivP~v~tae 104 (256)
T PRK10558 75 --RVPTNEP--------VIIKRLLDIGFYNFLIPFVETAE 104 (256)
T ss_pred --ECCCCCH--------HHHHHHhCCCCCeeeecCcCCHH
Confidence 4444455 78888999999999998445444
No 191
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=72.51 E-value=56 Score=32.34 Aligned_cols=104 Identities=14% Similarity=0.154 Sum_probs=73.0
Q ss_pred HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCChHHH
Q psy6272 244 VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSVEVT 322 (547)
Q Consensus 244 di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~~e~v 322 (547)
..+.+++.|+..+-+.+ +++...+.++.+..+.+.. ++.-.=|.--.+.++..++. +|+++.+--|.
T Consensus 27 ~~~a~~~gGi~~iEvt~-~~~~~~~~i~~l~~~~~~~--~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~--------- 94 (206)
T PRK09140 27 HVGALIEAGFRAIEIPL-NSPDPFDSIAALVKALGDR--ALIGAGTVLSPEQVDRLADAGGRLIVTPNTDP--------- 94 (206)
T ss_pred HHHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHcCCC--cEEeEEecCCHHHHHHHHHcCCCEEECCCCCH---------
Confidence 34678889999999995 7887777777776665433 22233344445567777766 78888753333
Q ss_pred HHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 323 FLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 323 ~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.+++.|+..|.|++..+. . . +++..+...|+|.+.+-
T Consensus 95 -----~v~~~~~~~~~~~~~G~~---t-----~--------~E~~~A~~~Gad~vk~F 131 (206)
T PRK09140 95 -----EVIRRAVALGMVVMPGVA---T-----P--------TEAFAALRAGAQALKLF 131 (206)
T ss_pred -----HHHHHHHHCCCcEEcccC---C-----H--------HHHHHHHHcCCCEEEEC
Confidence 377889999999998644 2 2 55678888999999874
No 192
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=72.50 E-value=19 Score=36.56 Aligned_cols=73 Identities=12% Similarity=0.122 Sum_probs=49.0
Q ss_pred hhHHH-HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEec--C-HHHHhhHHHHHhh-cCEEEEcCCccc
Q psy6272 240 RDKHV-VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIE--T-LLGMEYMDEIIME-SDGVVLNRIQLA 314 (547)
Q Consensus 240 ~D~~d-i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIE--t-~~av~nldeIl~~-~DgImIargDLg 314 (547)
..... ...+.+.|+|||..||.. +++.+++......-.+..+.-|= | .++++|+.++++. ++|+-++|.=+.
T Consensus 156 ~~~~~~~~~a~~~GADyikt~~~~---~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 156 ELVAHAARLGAELGADIVKTPYTG---DIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred HHHHHHHHHHHHHCCCEEeccCCC---CHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 34444 467788999999999864 55666665543322333333443 2 4568899999988 799999987664
Q ss_pred c
Q psy6272 315 V 315 (547)
Q Consensus 315 ~ 315 (547)
.
T Consensus 233 ~ 233 (258)
T TIGR01949 233 H 233 (258)
T ss_pred C
Confidence 4
No 193
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=72.26 E-value=38 Score=35.07 Aligned_cols=98 Identities=13% Similarity=0.149 Sum_probs=62.1
Q ss_pred HHHHHHHHH-cCCcEEEEcc------cCChhhHHH-HHHHHHhcCCCceEEEEec---CHHHHhhHHHHHhh-cCEEEEc
Q psy6272 242 KHVVDLIVR-EAVDIIIMSS------VTGANSIRE-MRGMLEDHVDRVLILAKIE---TLLGMEYMDEIIME-SDGVVLN 309 (547)
Q Consensus 242 ~~di~~~~~-~g~d~I~~sf------V~sa~di~~-~r~~l~~~~~~i~IiakIE---t~~av~nldeIl~~-~DgImIa 309 (547)
.+.+++.++ .|+++|++.= -=|.++-.+ ++..++..+.++.||+.+- |.++++.....-+. +|++|+.
T Consensus 27 ~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~ 106 (293)
T PRK04147 27 RRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATELGYDAISAV 106 (293)
T ss_pred HHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 456789999 9999998752 222333333 3444555567789999984 45666655555544 6999998
Q ss_pred CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 310 RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 310 rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
+..+.- ...+.+...-+.+ |.+.+.|+++-
T Consensus 107 ~P~y~~-~~~~~l~~~f~~v---a~a~~lPv~iY 136 (293)
T PRK04147 107 TPFYYP-FSFEEICDYYREI---IDSADNPMIVY 136 (293)
T ss_pred CCcCCC-CCHHHHHHHHHHH---HHhCCCCEEEE
Confidence 766522 2334555555545 44567899885
No 194
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=71.88 E-value=8.9 Score=37.93 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=53.4
Q ss_pred CChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEc
Q psy6272 237 IADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLN 309 (547)
Q Consensus 237 lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIa 309 (547)
+.+.=...++.-.+.|+|+|.+. +++.+++.++.+++.+.|.+..|..+-+| .++.+++++...|.|++=
T Consensus 65 Mv~~P~~~i~~~~~~g~~~i~~H-~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~~~~~~~l~~vD~VlvM 134 (201)
T PF00834_consen 65 MVENPERYIEEFAEAGADYITFH-AEATEDPKETIKYIKEAGIKAGIALNPET--PVEELEPYLDQVDMVLVM 134 (201)
T ss_dssp ESSSGGGHHHHHHHHT-SEEEEE-GGGTTTHHHHHHHHHHTTSEEEEEE-TTS---GGGGTTTGCCSSEEEEE
T ss_pred eeccHHHHHHHHHhcCCCEEEEc-ccchhCHHHHHHHHHHhCCCEEEEEECCC--CchHHHHHhhhcCEEEEE
Confidence 33333446788889999988776 56778999999999999988888888777 668899999999988873
No 195
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=71.79 E-value=89 Score=32.00 Aligned_cols=113 Identities=14% Similarity=0.185 Sum_probs=68.7
Q ss_pred HHHHHHHcCCcEEEEcccC-ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCccccc-CChH
Q psy6272 244 VVDLIVREAVDIIIMSSVT-GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVA-TSVE 320 (547)
Q Consensus 244 di~~~~~~g~d~I~~sfV~-sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e-~~~e 320 (547)
.+..+.+.|+|+|.+---- +.++++++.+...+.| ..+++-+-|.+-++. .... +|.|.+..-||... ..++
T Consensus 125 qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lG--l~~lvevh~~~E~~~---A~~~gadiIgin~rdl~~~~~d~~ 199 (260)
T PRK00278 125 QIYEARAAGADAILLIVAALDDEQLKELLDYAHSLG--LDVLVEVHDEEELER---ALKLGAPLIGINNRNLKTFEVDLE 199 (260)
T ss_pred HHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcC--CeEEEEeCCHHHHHH---HHHcCCCEEEECCCCcccccCCHH
Confidence 5889999999998876433 5567777777776554 455555556554433 2222 68888887777533 2222
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 321 VTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 321 ~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.+ .+++.... ...|++.-..+- | - .|+..+...|+|++++.
T Consensus 200 ~~----~~l~~~~p-~~~~vIaegGI~---t---~--------ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 200 TT----ERLAPLIP-SDRLVVSESGIF---T---P--------EDLKRLAKAGADAVLVG 240 (260)
T ss_pred HH----HHHHHhCC-CCCEEEEEeCCC---C---H--------HHHHHHHHcCCCEEEEC
Confidence 22 22322221 134666544432 1 2 67777888899999986
No 196
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=71.46 E-value=81 Score=31.19 Aligned_cols=119 Identities=13% Similarity=0.162 Sum_probs=63.4
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHH---------------------HHhhHHHH
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLL---------------------GMEYMDEI 299 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~---------------------av~nldeI 299 (547)
..++++..++.|++.|++.- ...++...++++.+..+.+. |+.-+..+. .++-+...
T Consensus 85 ~~~d~~~~~~~G~~~vilg~-~~l~~~~~~~~~~~~~~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 162 (232)
T TIGR03572 85 SLEDAKKLLSLGADKVSINT-AALENPDLIEEAARRFGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREA 162 (232)
T ss_pred CHHHHHHHHHcCCCEEEECh-hHhcCHHHHHHHHHHcCCce-EEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHH
Confidence 46677777888999998862 22344455555555444332 333333222 12222222
Q ss_pred Hhh-cCEEEEcCC-cccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHH-HHHhCccE
Q psy6272 300 IME-SDGVVLNRI-QLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNS-IVQDGADV 376 (547)
Q Consensus 300 l~~-~DgImIarg-DLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~n-av~~g~D~ 376 (547)
.+. +|.|.+.-- .=+..-|+ .+.. +-+.++..++|++.+..+- .. .|+.. .-..|+|+
T Consensus 163 ~~~G~d~i~i~~i~~~g~~~g~-~~~~----~~~i~~~~~ipvia~GGi~------s~--------~di~~~l~~~gadg 223 (232)
T TIGR03572 163 EQLGAGEILLNSIDRDGTMKGY-DLEL----IKTVSDAVSIPVIALGGAG------SL--------DDLVEVALEAGASA 223 (232)
T ss_pred HHcCCCEEEEeCCCccCCcCCC-CHHH----HHHHHhhCCCCEEEECCCC------CH--------HHHHHHHHHcCCCE
Confidence 222 477777631 11111121 2222 2233445689999988742 23 66666 44579999
Q ss_pred EeeC
Q psy6272 377 VVLT 380 (547)
Q Consensus 377 vmLs 380 (547)
++++
T Consensus 224 V~vg 227 (232)
T TIGR03572 224 VAAA 227 (232)
T ss_pred EEEe
Confidence 9997
No 197
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=71.37 E-value=61 Score=31.46 Aligned_cols=113 Identities=17% Similarity=0.125 Sum_probs=61.4
Q ss_pred hhHHHHHHHHHcCCcEEEEcccC-ChhhH--HHHHHHHHhcCC---CceEEEEecCHHHHhhHHHHHhh--cCEEEEcCC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVT-GANSI--REMRGMLEDHVD---RVLILAKIETLLGMEYMDEIIME--SDGVVLNRI 311 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~-sa~di--~~~r~~l~~~~~---~i~IiakIEt~~av~nldeIl~~--~DgImIarg 311 (547)
++.++++.+++.|+|+|.+=|.. |+..+ +.++++...... .+.++. + +-++++.+++.. .|+|=++-.
T Consensus 7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~v---n-~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 7 TTLEDALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPPFVKRVGVFV---N-EDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred CCHHHHHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCCCCcEEEEEe---C-CCHHHHHHHHHhcCCCEEEECCC
Confidence 35678999999999999998864 45444 223333322222 334433 2 225555566655 489988844
Q ss_pred cccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 312 QLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 312 DLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
| +.+.+..+. +..|++++.+-.+ .+. .- .+...+...|+|.+++.
T Consensus 83 e-----~~~~~~~l~-------~~~~~~~i~~i~~---~~~-~~--------~~~~~~~~~~aD~il~d 127 (203)
T cd00405 83 E-----SPEYCAQLR-------ARLGLPVIKAIRV---KDE-ED--------LEKAAAYAGEVDAILLD 127 (203)
T ss_pred C-----CHHHHHHHH-------hhcCCcEEEEEec---CCh-hh--------HHHhhhccccCCEEEEc
Confidence 3 222222221 2247777743221 111 11 22235556799999886
No 198
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=71.12 E-value=46 Score=34.31 Aligned_cols=122 Identities=16% Similarity=0.168 Sum_probs=71.9
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcch-HHHHHHHHHHHHHHhhhhhhhHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQ-AHHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Et-a~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
+...|+++|.|+.+. .|..... .-+...-..|++.+... +.. ..++++...++.++-...+++-.
T Consensus 72 lA~~a~~~Gl~~~i~-----vp~~~~~--------~k~~~~~~~GA~v~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~ 137 (298)
T TIGR01139 72 LAMVAAARGYKLILT-----MPETMSI--------ERRKLLKAYGAELVLTP-GAEGMKGAIAKAEEIAASTPNSYFMLQ 137 (298)
T ss_pred HHHHHHHcCCeEEEE-----eCCccCH--------HHHHHHHHcCCEEEEEC-CCCCHHHHHHHHHHHHHhCCCcEEccc
Confidence 556799999999886 4443322 22344556799999887 653 23666655554433211110111
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHH----HhcCCCCCEEEEeCch
Q psy6272 408 VFEDLCALACPPLDPAHSIVIACVNAALKCQ--AVAIIVITCSGYSAKLV----SKYRPQCPILAVSSLG 471 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~--a~aIvv~T~sG~tA~~i----sk~RP~~pIiavt~~~ 471 (547)
-|+ .+..+..-....+-|+..+++ .++||+-+-+|.++--+ ..++|...|++|-+..
T Consensus 138 ~~~-------n~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 200 (298)
T TIGR01139 138 QFE-------NPANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAE 200 (298)
T ss_pred ccC-------CcccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCC
Confidence 111 111111112234456666654 79999999999877644 4567999999999964
No 199
>PRK07334 threonine dehydratase; Provisional
Probab=71.07 E-value=43 Score=36.36 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=75.7
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+.+|.|+++. .|..+.- .-+...-..|++.++.. ++..++++...++.++-.. +|..+
T Consensus 86 lA~~a~~~G~~~~iv-----~p~~~~~--------~k~~~~~~~GA~v~~~~--~~~~~~~~~a~~l~~~~~~-~~~~~- 148 (403)
T PRK07334 86 VAYHAQRLGIPATIV-----MPRFTPT--------VKVERTRGFGAEVVLHG--ETLDEARAHARELAEEEGL-TFVHP- 148 (403)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHHcCCEEEEEC--cCHHHHHHHHHHHHHhcCC-EecCC-
Confidence 567899999999986 4443333 44455666899999775 3445777766666554221 11111
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----cCCCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVSK----YRPQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~~~ 471 (547)
|. .+ ...+.-..-+.|+..++ ..++||+-.-+|.++--+++ ++|.+.|++|-+..
T Consensus 149 ~~-------~~-~~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~ 208 (403)
T PRK07334 149 YD-------DP-AVIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTEL 208 (403)
T ss_pred CC-------CH-HHHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 01 12233344566666666 46899999999988776555 58999999999964
No 200
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=70.87 E-value=92 Score=29.79 Aligned_cols=88 Identities=10% Similarity=0.061 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCcEEEE-----cccCCh----hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCc
Q psy6272 243 HVVDLIVREAVDIIIM-----SSVTGA----NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQ 312 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~-----sfV~sa----~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargD 312 (547)
+.++.+.+.|+|+|.+ +|+.+. +.++++++.. +..+.+-.++.+. .+.++.+... +||+.+-=+.
T Consensus 16 ~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~---~~~~~v~l~~~d~--~~~~~~~~~~g~dgv~vh~~~ 90 (211)
T cd00429 16 EELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHT---DLPLDVHLMVENP--ERYIEAFAKAGADIITFHAEA 90 (211)
T ss_pred HHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhC---CCcEEEEeeeCCH--HHHHHHHHHcCCCEEEECccc
Confidence 4578899999999999 776444 4444454432 2223344566554 3346666655 6998764211
Q ss_pred ccccCChHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 313 LAVATSVEVTFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 313 Lg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
.+. ....++.+++.|+-+++.+.
T Consensus 91 ------~~~----~~~~~~~~~~~~~~~g~~~~ 113 (211)
T cd00429 91 ------TDH----LHRTIQLIKELGMKAGVALN 113 (211)
T ss_pred ------hhh----HHHHHHHHHHCCCeEEEEec
Confidence 011 12347888899998888653
No 201
>PRK07695 transcriptional regulator TenI; Provisional
Probab=70.85 E-value=19 Score=35.03 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCcEEEEcccCC--------hhhHHHHHHHHHhcCCCceEEE--EecCHHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTG--------ANSIREMRGMLEDHVDRVLILA--KIETLLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~s--------a~di~~~r~~l~~~~~~i~Iia--kIEt~~av~nldeIl~~-~DgImIar 310 (547)
.+.+..+.+.|+|+|+++.+.. ..++..+++..... ++.++| -| ++ +|+.++++. +|||.+++
T Consensus 105 ~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~--~ipvia~GGI-~~---~~~~~~~~~Ga~gvav~s 178 (201)
T PRK07695 105 LEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL--SIPVIAIGGI-TP---ENTRDVLAAGVSGIAVMS 178 (201)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEEcCC-CH---HHHHHHHHcCCCEEEEEH
Confidence 4557788899999999876521 22445555555433 345544 45 33 567777766 69999997
Q ss_pred Cccccc
Q psy6272 311 IQLAVA 316 (547)
Q Consensus 311 gDLg~e 316 (547)
+=...+
T Consensus 179 ~i~~~~ 184 (201)
T PRK07695 179 GIFSSA 184 (201)
T ss_pred HHhcCC
Confidence 655433
No 202
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=70.80 E-value=1e+02 Score=33.12 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcc
Q psy6272 337 GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSE 383 (547)
Q Consensus 337 gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~E 383 (547)
+.|++....+- .. .|+..++..|||+++++ ..
T Consensus 261 ~ipvia~GGI~------~~--------~dv~k~l~~GAd~v~ig-~~ 292 (352)
T PRK05437 261 DLPIIASGGIR------NG--------LDIAKALALGADAVGMA-GP 292 (352)
T ss_pred CCeEEEECCCC------CH--------HHHHHHHHcCCCEEEEh-HH
Confidence 78999877643 24 89999999999999998 44
No 203
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=70.67 E-value=78 Score=32.39 Aligned_cols=107 Identities=14% Similarity=0.094 Sum_probs=72.7
Q ss_pred hHHHHH-HHHHcCCcEEEE-----cccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHh---hHHHHHhh-cCEEEEcC
Q psy6272 241 DKHVVD-LIVREAVDIIIM-----SSVTGANSIREMRGMLEDHVDRVLILAKIETLLGME---YMDEIIME-SDGVVLNR 310 (547)
Q Consensus 241 D~~di~-~~~~~g~d~I~~-----sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~---nldeIl~~-~DgImIar 310 (547)
|..++. ...+.||++|.+ -|=.+.++++.+++.. ++.|+.| .=+- .+++.... +|+|.+.=
T Consensus 71 ~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v-----~iPvl~k----dfi~~~~qi~~a~~~GAD~VlLi~ 141 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAV-----SLPVLRK----DFIIDPYQIYEARAAGADAILLIV 141 (260)
T ss_pred CHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhc-----CCCEEee----eecCCHHHHHHHHHcCCCEEEEEe
Confidence 444544 456689999977 5668899999999864 4677754 1111 24444433 69998886
Q ss_pred CcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 311 IQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 311 gDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.+|. +.--++++..|+..|.-+++-++ +. .|+..+...|+|.+.++
T Consensus 142 ~~l~--------~~~l~~li~~a~~lGl~~lvevh-----~~-----------~E~~~A~~~gadiIgin 187 (260)
T PRK00278 142 AALD--------DEQLKELLDYAHSLGLDVLVEVH-----DE-----------EELERALKLGAPLIGIN 187 (260)
T ss_pred ccCC--------HHHHHHHHHHHHHcCCeEEEEeC-----CH-----------HHHHHHHHcCCCEEEEC
Confidence 6664 13445688899999999887322 22 55567788899999988
No 204
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=70.53 E-value=60 Score=34.70 Aligned_cols=117 Identities=15% Similarity=0.174 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHHc-CCcEEEEcccC-ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccc
Q psy6272 239 DRDKHVVDLIVRE-AVDIIIMSSVT-GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAV 315 (547)
Q Consensus 239 ~~D~~di~~~~~~-g~d~I~~sfV~-sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~ 315 (547)
....+..+..++. |+-.+..+|-. ..+++..+++ ..++++.++=|..--... .+. .|+|+....+=|-
T Consensus 90 ~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~------~g~~v~~~v~~~~~A~~~---~~~G~d~vI~~g~eAGG 160 (336)
T COG2070 90 NAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKA------AGIKVIHSVITVREALKA---ERAGADAVIAQGAEAGG 160 (336)
T ss_pred cchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHH------cCCeEEEEeCCHHHHHHH---HhCCCCEEEecCCcCCC
Confidence 4455666777777 99999999994 7778877776 245777776554432222 122 6999998877777
Q ss_pred cCC----hHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 316 ATS----VEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 316 e~~----~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+.| ...+...-.+|.+.++. +|||.|..+- .- .+++.|...|||+|-+.
T Consensus 161 H~g~~~~~~~t~~Lv~ev~~~~~~--iPViAAGGI~------dg--------~~i~AAlalGA~gVq~G 213 (336)
T COG2070 161 HRGGVDLEVSTFALVPEVVDAVDG--IPVIAAGGIA------DG--------RGIAAALALGADGVQMG 213 (336)
T ss_pred cCCCCCCCccHHHHHHHHHHHhcC--CCEEEecCcc------Ch--------HHHHHHHHhccHHHHhh
Confidence 766 23334444556555543 8999998853 23 78899999999998876
No 205
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=70.35 E-value=54 Score=33.34 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCCcEEEEccc------CChhhHHHH-HHHHHhcCCCceEEEEecC---HHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMSSV------TGANSIREM-RGMLEDHVDRVLILAKIET---LLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV------~sa~di~~~-r~~l~~~~~~i~IiakIEt---~~av~nldeIl~~-~DgImIar 310 (547)
.+.+++.++.|+++|++.=- -|.++-+++ +...+..+.++.|++.+=+ .++++.....-+. +|++|+.+
T Consensus 21 ~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~p 100 (281)
T cd00408 21 RRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVP 100 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEECC
Confidence 55678999999999986432 223333333 3444545567899998743 2333333333333 69999988
Q ss_pred CcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 311 IQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 311 gDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-.+.- .+.+.+...-+.|++ +.+.|+++-
T Consensus 101 P~y~~-~~~~~~~~~~~~ia~---~~~~pi~iY 129 (281)
T cd00408 101 PYYNK-PSQEGIVAHFKAVAD---ASDLPVILY 129 (281)
T ss_pred CcCCC-CCHHHHHHHHHHHHh---cCCCCEEEE
Confidence 76544 445666666666655 468999874
No 206
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=70.30 E-value=64 Score=34.56 Aligned_cols=155 Identities=17% Similarity=0.225 Sum_probs=71.6
Q ss_pred EEEEEEeCcEeCCCce-eeeCCC-------------CcCCCCCChh-hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHH
Q psy6272 209 VHCTVIRGGKLMDNQL-VTVPRV-------------TFNLPVIADR-DKHVVDLIVREAVDIIIMSSVTGANSIREMRGM 273 (547)
Q Consensus 209 v~~~V~~gG~L~s~Kg-inlp~~-------------~~~lp~lt~~-D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~ 273 (547)
+-+.+.+||..++|-. ..+.|- .+.+|.+|+- |..+++++.+. +|++-++ -++..+...++.
T Consensus 119 ~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lqIg-Ar~~~N~~LL~~- 195 (335)
T PRK08673 119 AGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQIG-ARNMQNFDLLKE- 195 (335)
T ss_pred hchhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEEEC-cccccCHHHHHH-
Confidence 4455777887775544 122221 2333443332 44444444444 4444443 122222222222
Q ss_pred HHhcCCCceEEEEecCHHHHh-hHHHHHhhc---------CEEEEcCCccccc-CChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 274 LEDHVDRVLILAKIETLLGME-YMDEIIMES---------DGVVLNRIQLAVA-TSVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 274 l~~~~~~i~IiakIEt~~av~-nldeIl~~~---------DgImIargDLg~e-~~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
++. .+..|+.| .|+. +++|++.++ +.++.-||=-..+ .+.+.+.... |...-+..+-||++
T Consensus 196 va~--~~kPViLk----~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~a--i~~lk~~~~lPVi~ 267 (335)
T PRK08673 196 VGK--TNKPVLLK----RGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSA--VPVIKKLTHLPVIV 267 (335)
T ss_pred HHc--CCCcEEEe----CCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHH--HHHHHHhcCCCEEE
Confidence 222 23455554 3444 455555553 5677777654442 2233332222 22222446899976
Q ss_pred EcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCc
Q psy6272 343 VGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQS 382 (547)
Q Consensus 343 aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~ 382 (547)
+|+.+--. +--...-.-.|+..|||++|+-|.
T Consensus 268 ------d~sH~~G~--~~~v~~~a~AAvA~GAdGliIE~H 299 (335)
T PRK08673 268 ------DPSHATGK--RDLVEPLALAAVAAGADGLIVEVH 299 (335)
T ss_pred ------eCCCCCcc--ccchHHHHHHHHHhCCCEEEEEec
Confidence 55543220 000001123678899999999643
No 207
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=70.22 E-value=1.3e+02 Score=30.52 Aligned_cols=137 Identities=9% Similarity=0.082 Sum_probs=74.9
Q ss_pred CCChhhHHH-HHHHHHcCCcEEEEcccCCh-hhHHHHHHHHHhcCCCceEEEEe-cCHHHHhhHHHHHhh-cCEEEE--c
Q psy6272 236 VIADRDKHV-VDLIVREAVDIIIMSSVTGA-NSIREMRGMLEDHVDRVLILAKI-ETLLGMEYMDEIIME-SDGVVL--N 309 (547)
Q Consensus 236 ~lt~~D~~d-i~~~~~~g~d~I~~sfV~sa-~di~~~r~~l~~~~~~i~IiakI-Et~~av~nldeIl~~-~DgImI--a 309 (547)
.+|..++.. ++...+.|+|.|=+.|-... .+.+.++.+.. .+.+..+.+-. -+.+++ +..... .|.|-+ .
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~~~~~~e~~~~l~~-~~~~~~~~~~~r~~~~~v---~~a~~~g~~~i~i~~~ 91 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVGIPAMGEEEREAIRAIVA-LGLPARLIVWCRAVKEDI---EAALRCGVTAVHISIP 91 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHh-cCCCCEEEEeccCCHHHH---HHHHhCCcCEEEEEEe
Confidence 455566555 45677799999977654443 33345554443 33455555543 234444 333333 354333 2
Q ss_pred CCcc----cccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHH-HHHhCccEEeeCCcch
Q psy6272 310 RIQL----AVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNS-IVQDGADVVVLTQSEQ 384 (547)
Q Consensus 310 rgDL----g~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~n-av~~g~D~vmLsk~Et 384 (547)
-.|. -.....++.....+.+++.|++.|..|.+... +-+|.+. ..+.+++. +...|+|.+.|. +|
T Consensus 92 ~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~---~~~~~~~-----~~~~~~~~~~~~~G~~~i~l~--DT 161 (259)
T cd07939 92 VSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAE---DASRADP-----DFLIEFAEVAQEAGADRLRFA--DT 161 (259)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeec---cCCCCCH-----HHHHHHHHHHHHCCCCEEEeC--CC
Confidence 2222 11123345555666799999999998776443 3333322 12255553 346799999997 55
Q ss_pred HH
Q psy6272 385 AH 386 (547)
Q Consensus 385 a~ 386 (547)
.=
T Consensus 162 ~G 163 (259)
T cd07939 162 VG 163 (259)
T ss_pred CC
Confidence 44
No 208
>KOG4175|consensus
Probab=70.21 E-value=70 Score=32.19 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=92.7
Q ss_pred CCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCC-ceEEEEecCHHHHhhHHHHHhhcCEEEEcCCc
Q psy6272 234 LPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDR-VLILAKIETLLGMEYMDEIIMESDGVVLNRIQ 312 (547)
Q Consensus 234 lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~-i~IiakIEt~~av~nldeIl~~~DgImIargD 312 (547)
-|-+...+...|..+.+.|+++++++-+ -+|+...+|++....+-. +.++|-=-|. +.++-|..++|+++---.-
T Consensus 105 NPIl~yG~e~~iq~ak~aGanGfiivDl-PpEEa~~~Rne~~k~gislvpLvaPsTtd---eRmell~~~adsFiYvVSr 180 (268)
T KOG4175|consen 105 NPILRYGVENYIQVAKNAGANGFIIVDL-PPEEAETLRNEARKHGISLVPLVAPSTTD---ERMELLVEAADSFIYVVSR 180 (268)
T ss_pred cHHHhhhHHHHHHHHHhcCCCceEeccC-ChHHHHHHHHHHHhcCceEEEeeCCCChH---HHHHHHHHhhcceEEEEEe
Confidence 4778888999999999999999998866 578899999999776543 3344433333 3455567777866532222
Q ss_pred ccccCChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHH
Q psy6272 313 LAVATSVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVD 390 (547)
Q Consensus 313 Lg~e~~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~ 390 (547)
.|+.=.-+.+...-.+.+++.|++ .+|+-+.-. .-|+..+ .-|+.+ +|+++.. .
T Consensus 181 mG~TG~~~svn~~l~~L~qrvrk~t~dtPlAVGFG---vst~EHf--------~qVgsv----aDGVvvG---------S 236 (268)
T KOG4175|consen 181 MGVTGTRESVNEKLQSLLQRVRKATGDTPLAVGFG---VSTPEHF--------KQVGSV----ADGVVVG---------S 236 (268)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCCCceeEeec---cCCHHHH--------Hhhhhh----ccceEec---------H
Confidence 333223355666666677777776 477655433 4455555 545444 7888887 3
Q ss_pred HHHHHHHHhhhh
Q psy6272 391 ILKEILKKTESV 402 (547)
Q Consensus 391 ~m~~I~~~aE~~ 402 (547)
.|-++|-++|.-
T Consensus 237 kiv~l~g~ae~g 248 (268)
T KOG4175|consen 237 KIVKLLGEAESG 248 (268)
T ss_pred HHHHHhccCCCc
Confidence 477888888853
No 209
>PLN00011 cysteine synthase
Probab=70.11 E-value=53 Score=34.51 Aligned_cols=121 Identities=17% Similarity=0.131 Sum_probs=71.1
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH-HHHHHHHHHHHHhhhhhhhHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-HRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~-eaV~~m~~I~~~aE~~~~~~~ 407 (547)
+...|+.+|.|+.+. .|....- .-+...-..|++.++.. ++.-. ++++...++.++....++..+
T Consensus 84 lA~~a~~~G~~~~iv-----vp~~~~~--------~k~~~i~~~GA~V~~~~-~~~~~~~~~~~a~~l~~~~~~~~~~~~ 149 (323)
T PLN00011 84 LACIGAARGYKVILV-----MPSTMSL--------ERRIILRALGAEVHLTD-QSIGLKGMLEKAEEILSKTPGGYIPQQ 149 (323)
T ss_pred HHHHHHHcCCeEEEE-----eCCCCCH--------HHHHHHHHcCCEEEEEC-CCcChHHHHHHHHHHHHhCCCeEEecc
Confidence 556799999999886 4443333 33445556799999876 43211 344444444432111111111
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHH----HhcCCCCCEEEEeCch
Q psy6272 408 VFEDLCALACPPLDPAHSIVIACVNAALKC--QAVAIIVITCSGYSAKLV----SKYRPQCPILAVSSLG 471 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~ia~aav~~a~~~--~a~aIvv~T~sG~tA~~i----sk~RP~~pIiavt~~~ 471 (547)
|+ .+.++.--....+.|+..++ ..++||+-+-+|.|.--+ ..++|...|++|-+..
T Consensus 150 -~~-------n~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~ 211 (323)
T PLN00011 150 -FE-------NPANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVE 211 (323)
T ss_pred -cc-------CCccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCC
Confidence 11 11122111334566666664 589999999999876544 4568999999999964
No 210
>PRK08639 threonine dehydratase; Validated
Probab=70.11 E-value=43 Score=36.66 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=73.5
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccE--EeeCCcchHHHHHHHHHHHHHHhhhhhhhH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADV--VVLTQSEQAHHRVDILKEILKKTESVLWEK 406 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~--vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~ 406 (547)
+...|+..|.|+.+. .|..+-. .-+...-..||+. +.+. +++..++++.-.+++++- ..+|..
T Consensus 88 lA~~a~~~G~~~~Iv-----mP~~~~~--------~k~~~~r~~GA~vv~v~~~-g~~~~~a~~~a~~~a~~~-g~~~~~ 152 (420)
T PRK08639 88 VAYACRHLGIPGVIF-----MPVTTPQ--------QKIDQVRFFGGEFVEIVLV-GDTFDDSAAAAQEYAEET-GATFIP 152 (420)
T ss_pred HHHHHHHcCCCEEEE-----ECCCChH--------HHHHHHHHcCCCeeEEEEe-CcCHHHHHHHHHHHHHhc-CCcccC
Confidence 667899999999886 4444333 3345556679984 4556 666667776666655442 211111
Q ss_pred HHHHHhhhcCCCCCChhhHHHHHHHHHHHhcC----CcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCch
Q psy6272 407 QVFEDLCALACPPLDPAHSIVIACVNAALKCQ----AVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLG 471 (547)
Q Consensus 407 ~~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~----a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~ 471 (547)
-|++ + +....-..-+.|+..+++ .++||+..-+|.++.-++ .++|.+.|++|-+..
T Consensus 153 -~~~~-------~-~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~ 216 (420)
T PRK08639 153 -PFDD-------P-DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAG 216 (420)
T ss_pred -CCCC-------h-hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1111 0 111112233666777664 699999999997766554 457999999998864
No 211
>PRK08227 autoinducer 2 aldolase; Validated
Probab=69.92 E-value=1.4e+02 Score=30.91 Aligned_cols=133 Identities=15% Similarity=0.086 Sum_probs=72.7
Q ss_pred HHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE----cCCCCCCC-cccccccCccchhhHHHHH
Q psy6272 296 MDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV----GDILPDHN-VEEYSDVSIGDMNDVNSIV 370 (547)
Q Consensus 296 ldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a----Tq~Le~Pt-raE~~~~~~~~~~Dv~nav 370 (547)
+..++.-+|+++.-+|=+.-.. -...++|.|+- |.+...|. ..-+ ++|-.|+
T Consensus 48 ~~~i~~~~da~~~~~G~~~~~~---------------~~~~~~~lil~ls~~t~~~~~~~~~~l~--------~sVeeAv 104 (264)
T PRK08227 48 IAPLFPYADVLMCTRGILRSVV---------------PPATNKPVVLRASGGNSILKELSNEAVA--------VDMEDAV 104 (264)
T ss_pred HHHHhhcCCEEEeChhHHHhcc---------------cccCCCcEEEEEcCCCCCCCCCCcccce--------ecHHHHH
Confidence 5555555789988765332100 02245776663 22222232 2333 7888999
Q ss_pred HhCccEEeeCC---cchHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhcCCcEEEEEcC
Q psy6272 371 QDGADVVVLTQ---SEQAHHRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITC 447 (547)
Q Consensus 371 ~~g~D~vmLsk---~Eta~eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~a~aIvv~T~ 447 (547)
..|+|+|...= +++-.+.++-+.+++++++++=- .+.-... ..+...+..+ +...|+++|.+++|+ ||=...
T Consensus 105 rlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~--Plla~~p-rG~~~~~~~~-~ia~aaRiaaELGAD-iVK~~y 179 (264)
T PRK08227 105 RLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGM--PVMAVTA-VGKDMVRDAR-YFSLATRIAAEMGAQ-IIKTYY 179 (264)
T ss_pred HCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCC--cEEEEec-CCCCcCchHH-HHHHHHHHHHHHcCC-EEecCC
Confidence 99999987720 34434777778888888876410 0000000 0111123344 555667788899999 555555
Q ss_pred Cc-hHHHHHH
Q psy6272 448 SG-YSAKLVS 456 (547)
Q Consensus 448 sG-~tA~~is 456 (547)
+| .-++.++
T Consensus 180 ~~~~f~~vv~ 189 (264)
T PRK08227 180 VEEGFERITA 189 (264)
T ss_pred CHHHHHHHHH
Confidence 66 3333444
No 212
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=69.85 E-value=13 Score=40.14 Aligned_cols=94 Identities=15% Similarity=0.112 Sum_probs=59.4
Q ss_pred HHHHHHHHHcCCcEEEEcccC------ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCC
Q psy6272 242 KHVVDLIVREAVDIIIMSSVT------GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRI 311 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~------sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIarg 311 (547)
.+|.+.+.+.|+|+|.+|.-- ....+..+.+.....+.++.||+- -|+.+-.+|++. +|++||||.
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av~~~i~vi~d----GGIr~g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAVDKRVPIVFD----SGVRRGQHVFKALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHhCCCCcEEee----CCcCCHHHHHHHHHcCCCEEEEcHH
Confidence 678899999999999988632 223455555554444456788874 566666666665 799999997
Q ss_pred cccc--cCCh---HH-HHHHHHHHHHHHHHcCCc
Q psy6272 312 QLAV--ATSV---EV-TFLAQKMIAARCNKQGKP 339 (547)
Q Consensus 312 DLg~--e~~~---e~-v~~~qk~ii~~c~~~gKP 339 (547)
=|-. .-|. +. +...+.++-......|..
T Consensus 315 ~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~ 348 (367)
T TIGR02708 315 VIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQ 348 (367)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5432 1233 23 234555555555555544
No 213
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=69.84 E-value=25 Score=37.88 Aligned_cols=94 Identities=21% Similarity=0.205 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCCcEEEEccc------CChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCC
Q psy6272 242 KHVVDLIVREAVDIIIMSSV------TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRI 311 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV------~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIarg 311 (547)
.+|.+.+.+.|+|+|.+|.- ..+..+..+.+.....+.++.||+- -|+.+-.+|++. +|+|||||.
T Consensus 232 ~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr~ 307 (351)
T cd04737 232 PEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGRP 307 (351)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECHH
Confidence 36778999999999999731 1222344444443333456788874 566666666665 799999996
Q ss_pred cccc-----cCChH-HHHHHHHHHHHHHHHcCCc
Q psy6272 312 QLAV-----ATSVE-VTFLAQKMIAARCNKQGKP 339 (547)
Q Consensus 312 DLg~-----e~~~e-~v~~~qk~ii~~c~~~gKP 339 (547)
=|-. +-|.+ .+...++++-..-...|..
T Consensus 308 ~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 341 (351)
T cd04737 308 VLYGLALGGAQGVASVLEHLNKELKIVMQLAGTR 341 (351)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 6531 11222 3445666666666666654
No 214
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=69.81 E-value=1e+02 Score=35.06 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=88.6
Q ss_pred CCChhhHHHHH-HHHHcCCcEEEEcc-cCChhhHHHHHHHHHhcCCCceEEEEec-CHHHH-----hhHHHHHhh-cCE-
Q psy6272 236 VIADRDKHVVD-LIVREAVDIIIMSS-VTGANSIREMRGMLEDHVDRVLILAKIE-TLLGM-----EYMDEIIME-SDG- 305 (547)
Q Consensus 236 ~lt~~D~~di~-~~~~~g~d~I~~sf-V~sa~di~~~r~~l~~~~~~i~IiakIE-t~~av-----~nldeIl~~-~Dg- 305 (547)
.+|..++..|. ...+.|+|.|=+-| .-|+.|...++.+.+..-++..|.+-.= .+..+ ..++..+.. .+.
T Consensus 19 ~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v 98 (526)
T TIGR00977 19 SFSLEDKIRIAERLDDLGIHYIEGGWPGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVV 98 (526)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeCCCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEE
Confidence 45667766654 56669999997753 3468888888887653323455555441 12221 124444433 343
Q ss_pred -EEEcCCccccc----CChHHHHHHHHHHHHHHHHcCCcEEE-EcCCCCCCCcccccccCccchhhHHH-HHHhCccEEe
Q psy6272 306 -VVLNRIQLAVA----TSVEVTFLAQKMIAARCNKQGKPFLV-VGDILPDHNVEEYSDVSIGDMNDVNS-IVQDGADVVV 378 (547)
Q Consensus 306 -ImIargDLg~e----~~~e~v~~~qk~ii~~c~~~gKPvi~-aTq~Le~PtraE~~~~~~~~~~Dv~n-av~~g~D~vm 378 (547)
+++.-.|+-++ ...+++...-...++.++.+|..|.+ ++.++ +.+|++. ..+-+++. +...|+|.+.
T Consensus 99 ~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~-D~~r~~~-----~~l~~~~~~a~~aGad~i~ 172 (526)
T TIGR00977 99 TIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFF-DGYKANP-----EYALATLATAQQAGADWLV 172 (526)
T ss_pred EEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeee-ecccCCH-----HHHHHHHHHHHhCCCCeEE
Confidence 44443444332 23466776677789999999998854 34333 3344433 22245554 3556999999
Q ss_pred eCCcchHH-----HHHHHHHHHHHH
Q psy6272 379 LTQSEQAH-----HRVDILKEILKK 398 (547)
Q Consensus 379 Lsk~Eta~-----eaV~~m~~I~~~ 398 (547)
|. +|.= +.-+.+..+.++
T Consensus 173 i~--DTvG~~~P~~v~~li~~l~~~ 195 (526)
T TIGR00977 173 LC--DTNGGTLPHEISEITTKVKRS 195 (526)
T ss_pred Ee--cCCCCcCHHHHHHHHHHHHHh
Confidence 97 5543 444444444433
No 215
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=69.74 E-value=97 Score=28.93 Aligned_cols=106 Identities=18% Similarity=0.166 Sum_probs=60.0
Q ss_pred HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCccc-------cc
Q psy6272 245 VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLA-------VA 316 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg-------~e 316 (547)
++.+.+.|+|+|.++.-.. ....++... +....+-+-+.|.+- +.+.... +|.|++++..-+ ..
T Consensus 65 ~~~a~~~g~~~vh~~~~~~--~~~~~~~~~---~~~~~~g~~~~t~~~---~~~~~~~g~d~i~~~~~~~~~~~~~~~~~ 136 (196)
T cd00564 65 VDLALAVGADGVHLGQDDL--PVAEARALL---GPDLIIGVSTHSLEE---ALRAEELGADYVGFGPVFPTPTKPGAGPP 136 (196)
T ss_pred HHHHHHcCCCEEecCcccC--CHHHHHHHc---CCCCEEEeeCCCHHH---HHHHhhcCCCEEEECCccCCCCCCCCCCC
Confidence 5668899999998886322 334444433 223344444444422 2233332 799999854221 22
Q ss_pred CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 317 TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 317 ~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.+++.+..+ +....+|++.+..+- . .++..+...|+|++.+.
T Consensus 137 ~~~~~~~~~-------~~~~~~pv~a~GGi~----~-----------~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 137 LGLELLREI-------AELVEIPVVAIGGIT----P-----------ENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCHHHHHHH-------HHhCCCCEEEECCCC----H-----------HHHHHHHHcCCCEEEEe
Confidence 333443332 223679999877631 1 34556667799999997
No 216
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=69.54 E-value=49 Score=35.79 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=28.7
Q ss_pred HcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 335 KQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 335 ~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
..+.|||....+= -- .||+.|+..|||++|+. .....
T Consensus 287 ~~~~~vi~dGGIr------~g--------~Dv~KALaLGA~aV~iG-r~~l~ 323 (361)
T cd04736 287 ATYKPVLIDSGIR------RG--------SDIVKALALGANAVLLG-RATLY 323 (361)
T ss_pred HhCCeEEEeCCCC------CH--------HHHHHHHHcCCCEEEEC-HHHHH
Confidence 3469999876532 24 89999999999999998 66554
No 217
>PRK06381 threonine synthase; Validated
Probab=69.42 E-value=53 Score=34.25 Aligned_cols=120 Identities=12% Similarity=0.060 Sum_probs=76.3
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+..|.|+++. .|..... .-+...-..|++.+... ++ -.++++...+.+++ +..++..+
T Consensus 78 lA~~aa~~G~~~~iv-----vp~~~~~--------~~~~~l~~~GA~V~~~~-~~-~~~~~~~a~~~~~~-~~~~~~~~- 140 (319)
T PRK06381 78 IAYFARLYGLKAVIF-----IPRSYSN--------SRVKEMEKYGAEIIYVD-GK-YEEAVERSRKFAKE-NGIYDANP- 140 (319)
T ss_pred HHHHHHHcCCcEEEE-----ECCCCCH--------HHHHHHHHcCCEEEEcC-CC-HHHHHHHHHHHHHH-cCcEecCC-
Confidence 566799999999886 4444333 44555667899999998 54 34666666666543 22111000
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHHhc----------CCCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKCQ--AVAIIVITCSGYSAKLVSKY----------RPQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~~--a~aIvv~T~sG~tA~~isk~----------RP~~pIiavt~~~ 471 (547)
+ ...+....+.....+.|+..+++ .++||+-+-+|.+.--++++ +|.+.|++|.+..
T Consensus 141 ~------~~n~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~ 209 (319)
T PRK06381 141 G------SVNSVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSG 209 (319)
T ss_pred C------CCCcchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCC
Confidence 0 00110112334556666666664 69999999999998877764 6888999999854
No 218
>PRK08638 threonine dehydratase; Validated
Probab=69.23 E-value=52 Score=34.92 Aligned_cols=118 Identities=17% Similarity=0.156 Sum_probs=75.3
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+..|.|+.+. .|...-. ..+...-..||+.++.. +...++++.+.+++++.. .++..+
T Consensus 90 lA~~aa~~G~~~~iv-----~p~~~~~--------~k~~~~~~~GA~V~~~~--~~~~~~~~~a~~~a~~~g-~~~~~~- 152 (333)
T PRK08638 90 VALSCALLGIDGKVV-----MPKGAPK--------SKVAATCGYGAEVVLHG--DNFNDTIAKVEEIVEEEG-RTFIPP- 152 (333)
T ss_pred HHHHHHHcCCCEEEE-----eCCCCcH--------HHHHHHHHcCCEEEEEC--cCHHHHHHHHHHHHHhcC-CEEcCc-
Confidence 556899999999986 4443333 44445566799998765 445577777777766532 221111
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhc----CCCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVSKY----RPQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~isk~----RP~~pIiavt~~~ 471 (547)
|+ .+ ...+.-..-+-|+..++ +.++||+-.-+|.+..-++++ +|.+.|++|=|..
T Consensus 153 ~~-------~~-~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g 212 (333)
T PRK08638 153 YD-------DP-KVIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSEN 212 (333)
T ss_pred CC-------Cc-chhccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 01 11122233444555554 579999999999998877765 8999999998853
No 219
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=69.23 E-value=43 Score=36.57 Aligned_cols=121 Identities=14% Similarity=0.239 Sum_probs=72.4
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcch----HHHHHHHHHHHHHHhhhhhh
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQ----AHHRVDILKEILKKTESVLW 404 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Et----a~eaV~~m~~I~~~aE~~~~ 404 (547)
+...|+++|.|+.+. .|..... .-+...-..||+.+... +.. +...++...++.++.+..++
T Consensus 77 lA~~a~~~G~~~~iv-----~p~~~~~--------~k~~~~~~~GA~v~~~~-~~~~~~~~~~~~~~a~~l~~~~~~~~~ 142 (454)
T TIGR01137 77 LALVAAIKGYKCIIV-----LPEKMSN--------EKVDVLKALGAEIVRTP-TAAAFDSPESHIGVAKRLVREIPGAHI 142 (454)
T ss_pred HHHHHHHcCCeEEEE-----eCCCcCH--------HHHHHHHHCCCEEEEcC-CccCCCchHHHHHHHHHHHHhCCCcEe
Confidence 567899999999885 4443333 34445566799998886 431 11234444455444332211
Q ss_pred hHHHHHHhhhcCCCCCChhhHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHHHh----cCCCCCEEEEeCch
Q psy6272 405 EKQVFEDLCALACPPLDPAHSIVIACVNAALKC--QAVAIIVITCSGYSAKLVSK----YRPQCPILAVSSLG 471 (547)
Q Consensus 405 ~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~~--~a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~~~ 471 (547)
..+ |. .+..+..-....+.|+..++ ..++||+..-+|.|+.-+++ ++|.+.|++|.+..
T Consensus 143 ~~~-~~-------~~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~ 207 (454)
T TIGR01137 143 LDQ-YN-------NPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEG 207 (454)
T ss_pred ccc-CC-------ChhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCC
Confidence 111 11 01111111234456677666 47999999999998875554 67999999998854
No 220
>PRK06382 threonine dehydratase; Provisional
Probab=69.06 E-value=48 Score=36.04 Aligned_cols=119 Identities=14% Similarity=0.054 Sum_probs=74.9
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+..|.|+.+. .|..+-. ..+...-..|++.+... ++--++.+...++.++- ..+|.. -
T Consensus 88 ~A~aa~~~G~~~~iv-----mp~~~~~--------~k~~~~~~~GA~Vv~~~--~~~~~a~~~a~~la~~~-~~~~v~-~ 150 (406)
T PRK06382 88 VAYAASINGIDAKIV-----MPEYTIP--------QKVNAVEAYGAHVILTG--RDYDEAHRYADKIAMDE-NRTFIE-A 150 (406)
T ss_pred HHHHHHHcCCCEEEE-----EcCCCHH--------HHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEecC-c
Confidence 567899999999886 4444333 34444556899987554 44456666666665442 111111 1
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----cCCCCCEEEEeCchh
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVSK----YRPQCPILAVSSLGY 472 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~~~~ 472 (547)
|+ .....+.-...+.|+..++ ..++||+..-+|.++.-+++ ..|.+.|++|-+...
T Consensus 151 ~~--------~~~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~ 211 (406)
T PRK06382 151 FN--------DRWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELS 211 (406)
T ss_pred cC--------ChHHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 11 0112223344566666666 47999999999988876655 489999999999643
No 221
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.06 E-value=20 Score=37.36 Aligned_cols=65 Identities=25% Similarity=0.265 Sum_probs=50.7
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcC--CCceEEEEecCHHH--HhhHHHHHhh-cCEEEEcC
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHV--DRVLILAKIETLLG--MEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~--~~i~IiakIEt~~a--v~nldeIl~~-~DgImIar 310 (547)
..+.+..+++.|+|+|.+=.. ++++++++.+.+.+.+ .++. ||---| ++|+.++++. +|+|.+|.
T Consensus 191 ~leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~~----leaSGGI~~~ni~~yA~tGvD~Is~ga 260 (278)
T PRK08385 191 SLEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERVK----IEVSGGITPENIEEYAKLDVDVISLGA 260 (278)
T ss_pred CHHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCEE----EEEECCCCHHHHHHHHHcCCCEEEeCh
Confidence 577789999999999999887 8999999999987765 3443 443334 4688888888 79998874
No 222
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=68.98 E-value=55 Score=35.74 Aligned_cols=95 Identities=16% Similarity=0.074 Sum_probs=55.9
Q ss_pred ChhhHHHHHHHHHhcCCCceEEEE-ecCHHHHhhHHHHHhh-cCEEEEcCCccccc--CCh---HHHHHHHHHHHHHHHH
Q psy6272 263 GANSIREMRGMLEDHVDRVLILAK-IETLLGMEYMDEIIME-SDGVVLNRIQLAVA--TSV---EVTFLAQKMIAARCNK 335 (547)
Q Consensus 263 sa~di~~~r~~l~~~~~~i~Iiak-IEt~~av~nldeIl~~-~DgImIargDLg~e--~~~---e~v~~~qk~ii~~c~~ 335 (547)
+-++++.+++.. +.+|+.| |-+.+ .....++. +|||+|.-. =|-. -++ +-++++++ .+.
T Consensus 241 tW~~i~~lr~~~-----~~pvivKgV~~~~---dA~~a~~~G~d~I~vsnh-GGr~~d~~~~t~~~L~ei~~----~~~- 306 (383)
T cd03332 241 TWEDLAFLREWT-----DLPIVLKGILHPD---DARRAVEAGVDGVVVSNH-GGRQVDGSIAALDALPEIVE----AVG- 306 (383)
T ss_pred CHHHHHHHHHhc-----CCCEEEecCCCHH---HHHHHHHCCCCEEEEcCC-CCcCCCCCcCHHHHHHHHHH----Hhc-
Confidence 557777777744 4678887 42222 22222222 699998621 1111 122 33333332 221
Q ss_pred cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 336 QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 336 ~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
-.+|++....+- .- .|++.|+..|||++++. .....
T Consensus 307 ~~~~vi~dGGIr------~G--------~Dv~KALaLGA~~v~iG-r~~l~ 342 (383)
T cd03332 307 DRLTVLFDSGVR------TG--------ADIMKALALGAKAVLIG-RPYAY 342 (383)
T ss_pred CCCeEEEeCCcC------cH--------HHHHHHHHcCCCEEEEc-HHHHH
Confidence 248999987743 35 99999999999999998 55443
No 223
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=68.48 E-value=8.9 Score=40.59 Aligned_cols=48 Identities=23% Similarity=0.472 Sum_probs=39.3
Q ss_pred eEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHH
Q psy6272 56 NIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLA 104 (547)
Q Consensus 56 kIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a 104 (547)
.+.+.+|......+.++.++++|+++.=+| +||+.+.+.+ +++.+|+.
T Consensus 84 ~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~~~~~~-~i~~ik~~ 132 (325)
T cd00381 84 LVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHSVYVIE-MIKFIKKK 132 (325)
T ss_pred eEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHHHHH
Confidence 345566765567899999999999999999 9999887877 88888764
No 224
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=68.10 E-value=1.1e+02 Score=32.17 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHH
Q psy6272 321 VTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKK 398 (547)
Q Consensus 321 ~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~ 398 (547)
--+.+.+.+-...++. ..|+|-.+.+. .. .|++.+++.|||+|++. +....+--..+.+|.++
T Consensus 223 i~p~al~~v~~~~~~~~~~ipIig~GGI~------s~--------~da~e~i~aGA~~Vqv~-ta~~~~gp~~~~~i~~~ 287 (310)
T PRK02506 223 IKPTALANVRAFYQRLNPSIQIIGTGGVK------TG--------RDAFEHILCGASMVQVG-TALHKEGPAVFERLTKE 287 (310)
T ss_pred ccHHHHHHHHHHHHhcCCCCCEEEECCCC------CH--------HHHHHHHHcCCCHHhhh-HHHHHhChHHHHHHHHH
Confidence 3445555555555555 58988887753 25 89999999999999998 44444567778888888
Q ss_pred hhhhhh
Q psy6272 399 TESVLW 404 (547)
Q Consensus 399 aE~~~~ 404 (547)
.+..+.
T Consensus 288 L~~~l~ 293 (310)
T PRK02506 288 LKAIMA 293 (310)
T ss_pred HHHHHH
Confidence 876543
No 225
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=67.97 E-value=8.3 Score=42.60 Aligned_cols=46 Identities=22% Similarity=0.500 Sum_probs=38.6
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHH
Q psy6272 57 IMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKL 103 (547)
Q Consensus 57 Ii~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~ 103 (547)
+=+.+|....+.+.++.|+++|+++.-++ +||..+.+.+ +|+.+|+
T Consensus 215 V~aav~~~~~~~~r~~~L~~aG~d~I~vd~a~g~~~~~~~-~i~~i~~ 261 (450)
T TIGR01302 215 VGAAVGTREFDKERAEALVKAGVDVIVIDSSHGHSIYVID-SIKEIKK 261 (450)
T ss_pred EEEEecCchhHHHHHHHHHHhCCCEEEEECCCCcHhHHHH-HHHHHHH
Confidence 44467777778899999999999999999 9998887777 7777776
No 226
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=67.80 E-value=79 Score=30.68 Aligned_cols=109 Identities=12% Similarity=0.130 Sum_probs=66.8
Q ss_pred HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCC---c---ccccCC
Q psy6272 245 VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRI---Q---LAVATS 318 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIarg---D---Lg~e~~ 318 (547)
++.+.+.|+|+|-+..-++.+.++.+++.+ +..+.....+-+....+.....-..+|++++.-. + -|...+
T Consensus 66 ~~ia~~~~~d~Vqlhg~e~~~~~~~l~~~~---~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~ 142 (203)
T cd00405 66 LEIAEELGLDVVQLHGDESPEYCAQLRARL---GLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFD 142 (203)
T ss_pred HHHHHhcCCCEEEECCCCCHHHHHHHHhhc---CCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEC
Confidence 456778899999999877778888887765 2222211455444333322222334799988542 1 134445
Q ss_pred hHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhC-ccEEeeC
Q psy6272 319 VEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDG-ADVVVLT 380 (547)
Q Consensus 319 ~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g-~D~vmLs 380 (547)
++.+..+. ..+|++.+..+ . . .++..++..| +|++-++
T Consensus 143 ~~~l~~~~---------~~~PvilaGGI--~-----~--------~Nv~~~i~~~~~~gvdv~ 181 (203)
T cd00405 143 WSLLRGLA---------SRKPVILAGGL--T-----P--------DNVAEAIRLVRPYGVDVS 181 (203)
T ss_pred hHHhhccc---------cCCCEEEECCC--C-----h--------HHHHHHHHhcCCCEEEcC
Confidence 54443221 46899999874 2 2 5566677777 8888887
No 227
>PLN02565 cysteine synthase
Probab=67.74 E-value=44 Score=35.27 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=74.5
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcc-hHHHHHHHHHHHHHHhhhhhhhHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSE-QAHHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~E-ta~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
+...|+.+|.|+.+. .|..+.. .-+...-..|++.++.. .+ ...++++...++.++-...++-.+
T Consensus 82 lA~~a~~~G~~~~iv-----vp~~~~~--------~k~~~i~~~GA~V~~~~-~~~~~~~~~~~a~~l~~~~~~~~~~~q 147 (322)
T PLN02565 82 LAFMAAAKGYKLIIT-----MPASMSL--------ERRIILLAFGAELVLTD-PAKGMKGAVQKAEEILAKTPNSYILQQ 147 (322)
T ss_pred HHHHHHHcCCeEEEE-----eCCCCcH--------HHHHHHHHcCCEEEEeC-CCCCcHHHHHHHHHHHHhCCCcEeecc
Confidence 456799999999886 5555444 55556666899999876 43 233666655555544212221111
Q ss_pred HHHHhhhcCCCCCCh-hhHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCch
Q psy6272 408 VFEDLCALACPPLDP-AHSIVIACVNAALKC--QAVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLG 471 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~-~~~ia~aav~~a~~~--~a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~ 471 (547)
|++ +..+ .+ ...-+.|+..++ ..++||+..-+|.+.--++ .++|.+.|++|-+..
T Consensus 148 -~~n-------~~n~~~~-~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~ 209 (322)
T PLN02565 148 -FEN-------PANPKIH-YETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVE 209 (322)
T ss_pred -cCC-------HhHHHHH-HHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 110 0011 11 233445566665 4899999999998876444 567999999999964
No 228
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=67.56 E-value=55 Score=31.51 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=59.0
Q ss_pred hHHHHHHHHHcCCcEEEEcccC-C-hh---hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCccc
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVT-G-AN---SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLA 314 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~-s-a~---di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg 314 (547)
-.+.++.+++.|+++|.+-.-. + .+ .++++++.... .++.++.. ++++...+. +|||.++-.++.
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~-------~~~~~a~~~gad~vh~~~~~~~ 93 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGLDTRERLELARALKELCRR--YGVPLIVN-------DRVDLALAVGADGVHLGQDDLP 93 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHH--hCCeEEEe-------ChHHHHHHcCCCEEecCcccCC
Confidence 4567889999999999874322 1 11 22333333322 23444432 345555544 789887644321
Q ss_pred ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 315 VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 315 ~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
. ..+...+..++.++++++ |. .++..+...|+|.+.++
T Consensus 94 ----~--------~~~~~~~~~~~~~g~~~~-----t~-----------~e~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 94 ----V--------ADARALLGPDAIIGLSTH-----TL-----------EEAAAALAAGADYVGVG 131 (212)
T ss_pred ----H--------HHHHHHcCCCCEEEEeCC-----CH-----------HHHHHHhHcCCCEEEEC
Confidence 1 122334456777887643 43 34467778899999986
No 229
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=67.50 E-value=33 Score=35.20 Aligned_cols=91 Identities=18% Similarity=0.290 Sum_probs=64.4
Q ss_pred hhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 264 ANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 264 a~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
.+.++.++++..+. .+.+++-+-+...++-+.+ .+|.+-||-+++.- ..++..+.+.||||++.
T Consensus 75 ~~gl~~l~~~~~~~--Gl~~~t~~~d~~~~~~l~~---~~d~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk 138 (260)
T TIGR01361 75 EEGLKLLRRAADEH--GLPVVTEVMDPRDVEIVAE---YADILQIGARNMQN-----------FELLKEVGKQGKPVLLK 138 (260)
T ss_pred HHHHHHHHHHHHHh--CCCEEEeeCChhhHHHHHh---hCCEEEECcccccC-----------HHHHHHHhcCCCcEEEe
Confidence 45677777777654 5788888888877777655 47999999777653 23677788899999999
Q ss_pred cCCCCCCCcccccccCccchhhHHHHHH-hCccEEeeC
Q psy6272 344 GDILPDHNVEEYSDVSIGDMNDVNSIVQ-DGADVVVLT 380 (547)
Q Consensus 344 Tq~Le~PtraE~~~~~~~~~~Dv~nav~-~g~D~vmLs 380 (547)
|.|. +|-.|+ -.++..+. .|.+-++|.
T Consensus 139 ~G~~--~t~~e~--------~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 139 RGMG--NTIEEW--------LYAAEYILSSGNGNVILC 166 (260)
T ss_pred CCCC--CCHHHH--------HHHHHHHHHcCCCcEEEE
Confidence 9874 455555 66666664 466545553
No 230
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=67.47 E-value=14 Score=40.20 Aligned_cols=99 Identities=18% Similarity=0.213 Sum_probs=67.1
Q ss_pred hHHHHHHHHHcC-CcEEEEcccC--C---------------hhhHHHHHHHHHhcC--CCceEEEEecCHHHHhhHHHHH
Q psy6272 241 DKHVVDLIVREA-VDIIIMSSVT--G---------------ANSIREMRGMLEDHV--DRVLILAKIETLLGMEYMDEII 300 (547)
Q Consensus 241 D~~di~~~~~~g-~d~I~~sfV~--s---------------a~di~~~r~~l~~~~--~~i~IiakIEt~~av~nldeIl 300 (547)
+.+++..+++.+ +|+|.++--. + ..-+.++++++.+.+ .++.|++ --|+.+-.+++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~via----sGGI~~g~Dv~ 301 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIA----SGGLRTGADVA 301 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEE----ECCCCCHHHHH
Confidence 556778888777 9999999874 1 123345555565432 4677877 34566656666
Q ss_pred hh----cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccc
Q psy6272 301 ME----SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEY 355 (547)
Q Consensus 301 ~~----~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~ 355 (547)
+. +|++.+||.=|.. .-.....+|+.-..|++++|| +|...+.
T Consensus 302 kalaLGAd~V~ig~~~l~a---------l~c~~~~~c~~~~cP~Giat~---~~~~~~~ 348 (392)
T cd02808 302 KALALGADAVGIGTAALIA---------LGCIQARKCHTNTCPVGVATQ---DPELRRR 348 (392)
T ss_pred HHHHcCCCeeeechHHHHh---------cchHHHHhcCCCCCCcccccC---ChHhhhh
Confidence 55 7999999876642 112245789999999999999 7776544
No 231
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=67.36 E-value=87 Score=32.12 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=60.9
Q ss_pred HHHHHHHHHcCCcEEEEcc------cCChhh-HHHHHHHHHhcCCCceEEEEecC---HHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMSS------VTGANS-IREMRGMLEDHVDRVLILAKIET---LLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf------V~sa~d-i~~~r~~l~~~~~~i~IiakIEt---~~av~nldeIl~~-~DgImIar 310 (547)
.+.+++.+++|+|++++.= -=|.++ .+-++..++..+.++.|++.+-. .++++.....-+. +||+|+.+
T Consensus 25 ~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~ 104 (289)
T PF00701_consen 25 KRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIP 104 (289)
T ss_dssp HHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcCceEEEEec
Confidence 5567899999999998852 222333 33334445556678899998864 4555554444333 69998775
Q ss_pred CcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 311 IQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 311 gDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-.... ...+.+...-+.| |.+-++|+++-
T Consensus 105 P~~~~-~s~~~l~~y~~~i---a~~~~~pi~iY 133 (289)
T PF00701_consen 105 PYYFK-PSQEELIDYFRAI---ADATDLPIIIY 133 (289)
T ss_dssp STSSS-CCHHHHHHHHHHH---HHHSSSEEEEE
T ss_pred ccccc-chhhHHHHHHHHH---HhhcCCCEEEE
Confidence 54432 3456666555545 46688999874
No 232
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=67.24 E-value=26 Score=35.03 Aligned_cols=38 Identities=5% Similarity=-0.016 Sum_probs=28.5
Q ss_pred HHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 327 KMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 327 k~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
..+++.|++++.|++=... +| +++..+...|+|.+=|-
T Consensus 98 ~~vi~~a~~~~i~~iPG~~---Tp-------------tEi~~a~~~Ga~~vKlF 135 (212)
T PRK05718 98 PPLLKAAQEGPIPLIPGVS---TP-------------SELMLGMELGLRTFKFF 135 (212)
T ss_pred HHHHHHHHHcCCCEeCCCC---CH-------------HHHHHHHHCCCCEEEEc
Confidence 4688899999999882211 22 56688999999999886
No 233
>PRK06852 aldolase; Validated
Probab=67.19 E-value=60 Score=34.38 Aligned_cols=73 Identities=21% Similarity=0.110 Sum_probs=43.6
Q ss_pred hhHHHHHHhC------ccEEeeCC---cchHHHHHHHHHHHHHHhhhh-----hhhHHHHHHhhhcCCCCCChhhHHHHH
Q psy6272 364 NDVNSIVQDG------ADVVVLTQ---SEQAHHRVDILKEILKKTESV-----LWEKQVFEDLCALACPPLDPAHSIVIA 429 (547)
Q Consensus 364 ~Dv~nav~~g------~D~vmLsk---~Eta~eaV~~m~~I~~~aE~~-----~~~~~~f~~~~~~~~~~~~~~~~ia~a 429 (547)
++|-.|+..| ||+|...= ++.-.+.++-+.+|+.+++++ .|- |.. .... ......+.|+.+
T Consensus 119 ~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~---ypr-G~~i-~~~~~~~~ia~a 193 (304)
T PRK06852 119 LDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWI---YPR-GKAV-KDEKDPHLIAGA 193 (304)
T ss_pred ecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEe---ecc-Cccc-CCCccHHHHHHH
Confidence 7788899988 88887620 344447788888888888764 111 110 0001 111223555555
Q ss_pred HHHHHHhcCCcEE
Q psy6272 430 CVNAALKCQAVAI 442 (547)
Q Consensus 430 av~~a~~~~a~aI 442 (547)
+++|.+++|+.|
T Consensus 194 -aRiaaELGADIV 205 (304)
T PRK06852 194 -AGVAACLGADFV 205 (304)
T ss_pred -HHHHHHHcCCEE
Confidence 488889999944
No 234
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=67.15 E-value=70 Score=33.15 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=61.4
Q ss_pred HHHHHHHHHcC-CcEEEEc------ccCChhhHHHHH-HHHHhcCCCceEEEEec---CHHHHhhHHHHHhh-cCEEEEc
Q psy6272 242 KHVVDLIVREA-VDIIIMS------SVTGANSIREMR-GMLEDHVDRVLILAKIE---TLLGMEYMDEIIME-SDGVVLN 309 (547)
Q Consensus 242 ~~di~~~~~~g-~d~I~~s------fV~sa~di~~~r-~~l~~~~~~i~IiakIE---t~~av~nldeIl~~-~DgImIa 309 (547)
.+.+++.++.| +|+|++. +-=|.++-.++- ...+..+.++.|++.+- |.++++.....-+. +||+|+.
T Consensus 24 ~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~ 103 (290)
T TIGR00683 24 RQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGYDCLSAV 103 (290)
T ss_pred HHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 55678999999 9999876 334555555544 44555566789999885 44555555444333 6999997
Q ss_pred CCcccccCChHHHHHHHHHHHHHHHHc-CCcEEEE
Q psy6272 310 RIQLAVATSVEVTFLAQKMIAARCNKQ-GKPFLVV 343 (547)
Q Consensus 310 rgDLg~e~~~e~v~~~qk~ii~~c~~~-gKPvi~a 343 (547)
+-..-- ...+.+...-+.+.+ +. +.|+++-
T Consensus 104 ~P~y~~-~~~~~i~~yf~~v~~---~~~~lpv~lY 134 (290)
T TIGR00683 104 TPFYYK-FSFPEIKHYYDTIIA---ETGGLNMIVY 134 (290)
T ss_pred CCcCCC-CCHHHHHHHHHHHHh---hCCCCCEEEE
Confidence 654322 233556655555544 44 6888864
No 235
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=67.05 E-value=97 Score=31.26 Aligned_cols=99 Identities=16% Similarity=0.254 Sum_probs=57.0
Q ss_pred CCCCChhhHHHHHHHHHcCCcEEEEc--c---cCChhhHHHHH--------------HHHHhcC--CCceEEEEec-CH-
Q psy6272 234 LPVIADRDKHVVDLIVREAVDIIIMS--S---VTGANSIREMR--------------GMLEDHV--DRVLILAKIE-TL- 290 (547)
Q Consensus 234 lp~lt~~D~~di~~~~~~g~d~I~~s--f---V~sa~di~~~r--------------~~l~~~~--~~i~IiakIE-t~- 290 (547)
.|.+ +.-.+.++...+.|+|++-+- | +-+...++.+- +.+.+.. .++.++.+.. ++
T Consensus 10 ~P~~-~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~ 88 (242)
T cd04724 10 DPDL-ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPI 88 (242)
T ss_pred CCCH-HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHH
Confidence 3443 344566778888899997664 4 44444444321 2222211 1455666555 43
Q ss_pred --HHHhhHHHHHhh--cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 291 --LGMEYMDEIIME--SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 291 --~av~nldeIl~~--~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
.|++++=+-+.. +||+++. || ++| -.++++..|+++|...+++
T Consensus 89 ~~~G~~~fi~~~~~aG~~giiip--Dl----~~e----e~~~~~~~~~~~g~~~i~~ 135 (242)
T cd04724 89 LQYGLERFLRDAKEAGVDGLIIP--DL----PPE----EAEEFREAAKEYGLDLIFL 135 (242)
T ss_pred HHhCHHHHHHHHHHCCCcEEEEC--CC----CHH----HHHHHHHHHHHcCCcEEEE
Confidence 234544333333 5999996 55 333 4467899999999876654
No 236
>PLN02979 glycolate oxidase
Probab=66.97 E-value=60 Score=35.22 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 337 GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 337 gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
..||+....+= .- .|++.|+..|||++++. .....
T Consensus 278 ~~~Vi~dGGIr------~G--------~Di~KALALGAdaV~iG-rp~L~ 312 (366)
T PLN02979 278 RIPVFLDGGVR------RG--------TDVFKALALGASGIFIG-RPVVF 312 (366)
T ss_pred CCeEEEeCCcC------cH--------HHHHHHHHcCCCEEEEc-HHHHH
Confidence 47888876642 35 89999999999999998 66554
No 237
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=66.63 E-value=1.5e+02 Score=29.96 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHcCCcEEEEc--ccCChhhHHHHHHHHHhcCCCceEEEEecCHHH-------------------HhhHHH
Q psy6272 240 RDKHVVDLIVREAVDIIIMS--SVTGANSIREMRGMLEDHVDRVLILAKIETLLG-------------------MEYMDE 298 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~s--fV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a-------------------v~nlde 298 (547)
.+.+|++..+..|++.|++. ++++++-++++.+.. +.+ +|+.-|....+ -.++.+
T Consensus 84 ~s~~d~~~~~~~Ga~~vivgt~~~~~p~~~~~~~~~~---~~~-~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~ 159 (254)
T TIGR00735 84 KSIEDVDKLLRAGADKVSINTAAVKNPELIYELADRF---GSQ-CIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVE 159 (254)
T ss_pred CCHHHHHHHHHcCCCEEEEChhHhhChHHHHHHHHHc---CCC-CEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHH
Confidence 35778888889999988876 345655555554443 211 22222221111 112223
Q ss_pred HH----hh-cCEEEEcCCc-ccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHh
Q psy6272 299 II----ME-SDGVVLNRIQ-LAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQD 372 (547)
Q Consensus 299 Il----~~-~DgImIargD-Lg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~ 372 (547)
++ +. +|.|.+.--+ -|..-| ..+..+ +++ ++..+.||+.+..+- .. .|+..+...
T Consensus 160 ~~~~l~~~G~~~iivt~i~~~g~~~g-~~~~~~-~~i---~~~~~ipvia~GGi~------s~--------~di~~~~~~ 220 (254)
T TIGR00735 160 WAKEVEKLGAGEILLTSMDKDGTKSG-YDLELT-KAV---SEAVKIPVIASGGAG------KP--------EHFYEAFTK 220 (254)
T ss_pred HHHHHHHcCCCEEEEeCcCcccCCCC-CCHHHH-HHH---HHhCCCCEEEeCCCC------CH--------HHHHHHHHc
Confidence 33 22 5877773111 111111 122222 222 344689999988743 23 777888877
Q ss_pred C-ccEEeeC
Q psy6272 373 G-ADVVVLT 380 (547)
Q Consensus 373 g-~D~vmLs 380 (547)
| +|++|++
T Consensus 221 g~~dgv~~g 229 (254)
T TIGR00735 221 GKADAALAA 229 (254)
T ss_pred CCcceeeEh
Confidence 8 9999997
No 238
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=66.51 E-value=46 Score=33.96 Aligned_cols=76 Identities=14% Similarity=0.248 Sum_probs=42.1
Q ss_pred CceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccC
Q psy6272 280 RVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVS 359 (547)
Q Consensus 280 ~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~ 359 (547)
.+..++-.=..++++-|+++ -.+.+=||-+||. .++ +++.|.+.|||+|++|.| -|-+|+
T Consensus 69 gi~f~stpfd~~s~d~l~~~--~~~~~KIaS~dl~------n~~-----lL~~~A~tgkPvIlSTG~---stl~EI---- 128 (241)
T PF03102_consen 69 GIDFFSTPFDEESVDFLEEL--GVPAYKIASGDLT------NLP-----LLEYIAKTGKPVILSTGM---STLEEI---- 128 (241)
T ss_dssp T-EEEEEE-SHHHHHHHHHH--T-SEEEE-GGGTT-------HH-----HHHHHHTT-S-EEEE-TT-----HHHH----
T ss_pred CCEEEECCCCHHHHHHHHHc--CCCEEEecccccc------CHH-----HHHHHHHhCCcEEEECCC---CCHHHH----
Confidence 45555555555555555333 2688888989988 233 556678899999999994 566677
Q ss_pred ccchhhHHHHH-HhCccEEee
Q psy6272 360 IGDMNDVNSIV-QDGADVVVL 379 (547)
Q Consensus 360 ~~~~~Dv~nav-~~g~D~vmL 379 (547)
.++.+++ ..|.+-+.|
T Consensus 129 ----~~Av~~~~~~~~~~l~l 145 (241)
T PF03102_consen 129 ----ERAVEVLREAGNEDLVL 145 (241)
T ss_dssp ----HHHHHHHHHHCT--EEE
T ss_pred ----HHHHHHHHhcCCCCEEE
Confidence 7777777 445444443
No 239
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=66.51 E-value=46 Score=34.21 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=62.4
Q ss_pred cCCCCCCh-hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEE---ecCHHHHhhHHHHHhh---cC
Q psy6272 232 FNLPVIAD-RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAK---IETLLGMEYMDEIIME---SD 304 (547)
Q Consensus 232 ~~lp~lt~-~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~Iiak---IEt~~av~nldeIl~~---~D 304 (547)
+.+|.+|+ .|..+++++.+ .+|++-++- ++..+...++. +++. ...|+.| --|.+-+.+.-|.+.. -+
T Consensus 78 ~Gl~~~Tev~d~~~v~~~~e-~vdilqIgs-~~~~n~~LL~~-va~t--gkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~ 152 (250)
T PRK13397 78 FGLLSVSEIMSERQLEEAYD-YLDVIQVGA-RNMQNFEFLKT-LSHI--DKPILFKRGLMATIEEYLGALSYLQDTGKSN 152 (250)
T ss_pred cCCCEEEeeCCHHHHHHHHh-cCCEEEECc-ccccCHHHHHH-HHcc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCe
Confidence 44444444 25566666666 366665552 23333332222 2222 3345544 1222233333333332 26
Q ss_pred EEEEcCCcccccCChH-HHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH-HHHHhCccEEeeC
Q psy6272 305 GVVLNRIQLAVATSVE-VTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN-SIVQDGADVVVLT 380 (547)
Q Consensus 305 gImIargDLg~e~~~e-~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~-nav~~g~D~vmLs 380 (547)
-++.-||=.+...+.+ .+.... |...-+..+.|||+ +||++-- .. ..+..++ .|+..|+|++|+-
T Consensus 153 i~L~eRg~~~Y~~~~~n~~dl~a--i~~lk~~~~lPViv------d~SHs~G-~r--~~v~~~a~AAvA~GAdGl~IE 219 (250)
T PRK13397 153 IILCERGVRGYDVETRNMLDIMA--VPIIQQKTDLPIIV------DVSHSTG-RR--DLLLPAAKIAKAVGANGIMME 219 (250)
T ss_pred EEEEccccCCCCCccccccCHHH--HHHHHHHhCCCeEE------CCCCCCc-cc--chHHHHHHHHHHhCCCEEEEE
Confidence 7777788766554433 111111 11122446899998 5554321 00 0001222 6788899999985
No 240
>TIGR03586 PseI pseudaminic acid synthase.
Probab=66.47 E-value=70 Score=34.14 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=51.0
Q ss_pred CceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCccccccc
Q psy6272 280 RVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDV 358 (547)
Q Consensus 280 ~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~ 358 (547)
.+..++-.=..+++ |.+... .|.+=||-+|+.- ++ +++.+-+.||||++.|.| .|-+|+
T Consensus 90 Gi~~~stpfd~~sv---d~l~~~~v~~~KI~S~~~~n------~~-----LL~~va~~gkPvilstG~---~t~~Ei--- 149 (327)
T TIGR03586 90 GLTIFSSPFDETAV---DFLESLDVPAYKIASFEITD------LP-----LIRYVAKTGKPIIMSTGI---ATLEEI--- 149 (327)
T ss_pred CCcEEEccCCHHHH---HHHHHcCCCEEEECCccccC------HH-----HHHHHHhcCCcEEEECCC---CCHHHH---
Confidence 46666654444544 555555 7999999999863 22 445567789999999996 467777
Q ss_pred CccchhhHHHHHH-hCc-cEEee
Q psy6272 359 SIGDMNDVNSIVQ-DGA-DVVVL 379 (547)
Q Consensus 359 ~~~~~~Dv~nav~-~g~-D~vmL 379 (547)
...+..+. .|. +.++|
T Consensus 150 -----~~Av~~i~~~g~~~i~Ll 167 (327)
T TIGR03586 150 -----QEAVEACREAGCKDLVLL 167 (327)
T ss_pred -----HHHHHHHHHCCCCcEEEE
Confidence 77777775 466 44444
No 241
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=66.35 E-value=68 Score=32.82 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=68.1
Q ss_pred CCCceeeeCCCC-cCC-CCCChhhHH-HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHH---
Q psy6272 220 MDNQLVTVPRVT-FNL-PVIADRDKH-VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGM--- 293 (547)
Q Consensus 220 ~s~Kginlp~~~-~~l-p~lt~~D~~-di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av--- 293 (547)
++.|.+-+|==+ +-. |.-+..|.+ .++.+++.|+|.|+++. .-++..+..+ +.++.++.+|++.-.+
T Consensus 17 ~~g~~~~~a~Dh~~l~gp~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~~~~~~---~~~~~l~~~i~~~~~~~~~ 89 (267)
T PRK07226 17 RTGRTVIVPMDHGVSHGPIDGLVDIRDTVNKVAEGGADAVLMHK----GLARHGHRGY---GRDVGLIVHLSASTSLSPD 89 (267)
T ss_pred CCCCEEEEECCCccccCCCcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhhhcccc---CCCCcEEEEEcCCCCCCCC
Confidence 345666666222 221 555666755 46789999999999984 3333333333 2357788888843333
Q ss_pred -------hhHHHHHhh-cCEEEEc--CCcccccCChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 294 -------EYMDEIIME-SDGVVLN--RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 294 -------~nldeIl~~-~DgImIa--rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
...++.++. +|.+-+- -|++. .+++...-+++.+.|+++|.|+++
T Consensus 90 ~~~~~~~~~ve~A~~~Gad~v~~~~~~g~~~----~~~~~~~~~~v~~~~~~~g~pl~v 144 (267)
T PRK07226 90 PNDKVLVGTVEEAIKLGADAVSVHVNVGSET----EAEMLEDLGEVAEECEEWGMPLLA 144 (267)
T ss_pred CCcceeeecHHHHHHcCCCEEEEEEecCChh----HHHHHHHHHHHHHHHHHcCCcEEE
Confidence 225555554 5654443 22221 345666667799999999999987
No 242
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=66.21 E-value=28 Score=34.08 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=49.2
Q ss_pred HHHHHHHHHhcCCCceEEEEecCHH-HHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 267 IREMRGMLEDHVDRVLILAKIETLL-GMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 267 i~~~r~~l~~~~~~i~IiakIEt~~-av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
++.+.+.|.+.|.++.|.+.-|... ..++.++++...|.|+.+..+ ......+-+.|+++++|++.+.
T Consensus 77 a~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 77 AAASYEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4566777877888888877655543 246778888888998877443 2244557788999999999863
No 243
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=65.94 E-value=57 Score=34.33 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=69.5
Q ss_pred cccCChhhHHHHHHHHHhcCCCceEEEEecCHHH-HhhHHHHHhh-cCEEEEcCCccccc--CChHHHHHHHHHHHHHHH
Q psy6272 259 SSVTGANSIREMRGMLEDHVDRVLILAKIETLLG-MEYMDEIIME-SDGVVLNRIQLAVA--TSVEVTFLAQKMIAARCN 334 (547)
Q Consensus 259 sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a-v~nldeIl~~-~DgImIargDLg~e--~~~e~v~~~qk~ii~~c~ 334 (547)
.-.+++++|+++++.. ++.|++|+- .+ +...+.+.+. +|.| | ..+ -|.+++....| +
T Consensus 58 ~Rm~~p~~I~aIk~~V-----~iPVigk~R--igh~~Ea~~L~~~GvDiI-----D-~Te~lrpad~~~~~~K------~ 118 (293)
T PRK04180 58 ARMADPKMIEEIMDAV-----SIPVMAKAR--IGHFVEAQILEALGVDYI-----D-ESEVLTPADEEYHIDK------W 118 (293)
T ss_pred eecCCHHHHHHHHHhC-----CCCeEEeeh--hhHHHHHHHHHHcCCCEE-----e-ccCCCCchHHHHHHHH------H
Confidence 3456777777777654 578888753 33 5555555555 5777 3 222 12222222222 2
Q ss_pred HcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH----HHHHHHHHHHHHhhhh
Q psy6272 335 KQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH----HRVDILKEILKKTESV 402 (547)
Q Consensus 335 ~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~----eaV~~m~~I~~~aE~~ 402 (547)
+++.|++.-. ..+ .+.-+++..|+|.|--. ||.-. |||+-|+.|..++-..
T Consensus 119 ~f~~~fmad~--------~~l--------~EAlrai~~GadmI~Tt-ge~gtg~v~~av~h~r~~~~~i~~L 173 (293)
T PRK04180 119 DFTVPFVCGA--------RNL--------GEALRRIAEGAAMIRTK-GEAGTGNVVEAVRHMRQINGEIRRL 173 (293)
T ss_pred HcCCCEEccC--------CCH--------HHHHHHHHCCCCeeecc-CCCCCccHHHHHHHHHHHHHHHHHH
Confidence 3488877521 123 77789999999999988 99655 9999999998888754
No 244
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=65.93 E-value=1.5e+02 Score=29.61 Aligned_cols=118 Identities=19% Similarity=0.200 Sum_probs=60.6
Q ss_pred hHHHHHHHHHcCCcEEEEcc--cCChhhHHHHHHHHHhcCCC-ce--EEEEe---------------cC-HHHHhhHHHH
Q psy6272 241 DKHVVDLIVREAVDIIIMSS--VTGANSIREMRGMLEDHVDR-VL--ILAKI---------------ET-LLGMEYMDEI 299 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sf--V~sa~di~~~r~~l~~~~~~-i~--IiakI---------------Et-~~av~nldeI 299 (547)
+.++++..++.|+|.|++.. .++++.+.++.+.+ +.+ +. +=+|+ ++ .+.++-+.++
T Consensus 82 s~~d~~~~l~~G~~~v~ig~~~~~~p~~~~~i~~~~---~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 158 (243)
T cd04731 82 SLEDARRLLRAGADKVSINSAAVENPELIREIAKRF---GSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEV 158 (243)
T ss_pred CHHHHHHHHHcCCceEEECchhhhChHHHHHHHHHc---CCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHH
Confidence 45677777788999888764 34455555554433 322 11 11121 11 1122222222
Q ss_pred Hhh-cCEEEEc-CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHh-CccE
Q psy6272 300 IME-SDGVVLN-RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQD-GADV 376 (547)
Q Consensus 300 l~~-~DgImIa-rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~-g~D~ 376 (547)
.+. +|.|.+. +..=+..-|+ .+..++ +.++..+.|++.+..+. .. .|+..+... |+|+
T Consensus 159 ~~~G~d~i~v~~i~~~g~~~g~-~~~~i~----~i~~~~~~pvia~GGi~------~~--------~di~~~l~~~g~dg 219 (243)
T cd04731 159 EELGAGEILLTSMDRDGTKKGY-DLELIR----AVSSAVNIPVIASGGAG------KP--------EHFVEAFEEGGADA 219 (243)
T ss_pred HHCCCCEEEEeccCCCCCCCCC-CHHHHH----HHHhhCCCCEEEeCCCC------CH--------HHHHHHHHhCCCCE
Confidence 222 5877773 2211111122 122222 22334689999987743 12 666777765 9999
Q ss_pred EeeC
Q psy6272 377 VVLT 380 (547)
Q Consensus 377 vmLs 380 (547)
+|++
T Consensus 220 v~vg 223 (243)
T cd04731 220 ALAA 223 (243)
T ss_pred EEEe
Confidence 9997
No 245
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=65.88 E-value=16 Score=37.15 Aligned_cols=85 Identities=14% Similarity=0.139 Sum_probs=50.5
Q ss_pred EEEecCHHHHhhHHHHHhh-----cCEEEEcCCcccccCChHHHHHHHHHHHHHHH-HcCCcEEEEcCCCCCCCcccccc
Q psy6272 284 LAKIETLLGMEYMDEIIME-----SDGVVLNRIQLAVATSVEVTFLAQKMIAARCN-KQGKPFLVVGDILPDHNVEEYSD 357 (547)
Q Consensus 284 iakIEt~~av~nldeIl~~-----~DgImIargDLg~e~~~e~v~~~qk~ii~~c~-~~gKPvi~aTq~Le~PtraE~~~ 357 (547)
+.||.=.+ .++.+||++. .|+|||| |=++++. ..-.+.+++++ +.+.|++. -|.-.+.
T Consensus 19 ~tliDP~k-~~~~~ei~~~~~~~GTDaImIG-GS~gvt~------~~~~~~v~~ik~~~~lPvil------fP~~~~~-- 82 (240)
T COG1646 19 LTLIDPDK-TEEADEIAEAAAEAGTDAIMIG-GSDGVTE------ENVDNVVEAIKERTDLPVIL------FPGSPSG-- 82 (240)
T ss_pred EEEeCccc-ccccHHHHHHHHHcCCCEEEEC-CcccccH------HHHHHHHHHHHhhcCCCEEE------ecCChhc--
Confidence 44554322 2666776666 4999999 6555431 23344667777 89999998 4443333
Q ss_pred cCccchhhHHHHHHhCccEEee----CCcchHH------HHHHHHHHHH
Q psy6272 358 VSIGDMNDVNSIVQDGADVVVL----TQSEQAH------HRVDILKEIL 396 (547)
Q Consensus 358 ~~~~~~~Dv~nav~~g~D~vmL----sk~Eta~------eaV~~m~~I~ 396 (547)
+..++|+++. +-.+.-. ++.+...++.
T Consensus 83 ------------is~~aDavff~svLNS~n~~~i~gaq~~~a~~~~~~~ 119 (240)
T COG1646 83 ------------ISPYADAVFFPSVLNSDNPYWIVGAQVEGAKLVGKLG 119 (240)
T ss_pred ------------cCccCCeEEEEEEecCCCcccccchhhhhhHHHHhhh
Confidence 4458888765 3022222 6666666655
No 246
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=65.83 E-value=43 Score=34.16 Aligned_cols=93 Identities=11% Similarity=-0.003 Sum_probs=62.0
Q ss_pred HHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh--cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCC
Q psy6272 270 MRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDIL 347 (547)
Q Consensus 270 ~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~L 347 (547)
+++.|.+...-+..+..+-++... ||+.. .|.|+|. +|-+.-.+..++. ++.+|+..|.++++
T Consensus 3 lk~~l~~g~~~~G~~~~~~sp~~~----e~~a~~G~D~v~iD-----~EHg~~~~~~~~~-~~~a~~~~g~~~~V----- 67 (249)
T TIGR03239 3 FRQDLLARETLIGCWSALGNPITT----EVLGLAGFDWLLLD-----GEHAPNDVLTFIP-QLMALKGSASAPVV----- 67 (249)
T ss_pred HHHHHHcCCceEEEEEcCCCcHHH----HHHHhcCCCEEEEe-----cccCCCCHHHHHH-HHHHHhhcCCCcEE-----
Confidence 455555422234466666666544 45555 4999997 5555545555554 78889999999888
Q ss_pred CCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 348 PDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 348 e~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
++...+- ..+..++..|+++||+..-+|+-
T Consensus 68 -Rvp~~~~--------~~i~r~LD~Ga~gIivP~v~tae 97 (249)
T TIGR03239 68 -RPPWNEP--------VIIKRLLDIGFYNFLIPFVESAE 97 (249)
T ss_pred -ECCCCCH--------HHHHHHhcCCCCEEEecCcCCHH
Confidence 4444455 77889999999999998444444
No 247
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.81 E-value=56 Score=32.62 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 325 AQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 325 ~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
....+++.|+++|.|++=.+. . . +++..+...|+|.+-+-
T Consensus 97 ~~~~v~~~~~~~~i~~iPG~~---T-----~--------~E~~~A~~~Gad~vklF 136 (213)
T PRK06552 97 FNRETAKICNLYQIPYLPGCM---T-----V--------TEIVTALEAGSEIVKLF 136 (213)
T ss_pred CCHHHHHHHHHcCCCEECCcC---C-----H--------HHHHHHHHcCCCEEEEC
Confidence 446788999999999986443 2 2 66678889999999995
No 248
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=65.73 E-value=1.2e+02 Score=30.41 Aligned_cols=117 Identities=10% Similarity=0.128 Sum_probs=70.9
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHH-------HhhHHHHHhh----cCEEEEc
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLG-------MEYMDEIIME----SDGVVLN 309 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a-------v~nldeIl~~----~DgImIa 309 (547)
+.++++..++.|++-|++... ...+ ..++++++..+++ .++.-|....+ ..++.+.++. ++.+++.
T Consensus 89 ~~edv~~~l~~Ga~~viigt~-~~~~-~~~~~~~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 165 (233)
T cd04723 89 SLENAQEWLKRGASRVIVGTE-TLPS-DDDEDRLAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVL 165 (233)
T ss_pred CHHHHHHHHHcCCCeEEEcce-eccc-hHHHHHHHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEE
Confidence 388899999999999988653 3455 6677777666543 45555555443 1223333333 4666654
Q ss_pred CCcccccCC--hHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 310 RIQLAVATS--VEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 310 rgDLg~e~~--~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
|+..+-. -..+..+ + +.++..+.|++++..+- -. .|+..+...|+|+++++
T Consensus 166 --di~~~G~~~g~~~~~~-~---~i~~~~~ipvi~~GGi~------s~--------edi~~l~~~G~~~vivG 218 (233)
T cd04723 166 --DIDRVGSGQGPDLELL-E---RLAARADIPVIAAGGVR------SV--------EDLELLKKLGASGALVA 218 (233)
T ss_pred --EcCccccCCCcCHHHH-H---HHHHhcCCCEEEeCCCC------CH--------HHHHHHHHcCCCEEEEe
Confidence 3322111 1122222 2 23455689999998742 23 77788888899999998
No 249
>PRK11761 cysM cysteine synthase B; Provisional
Probab=65.36 E-value=81 Score=32.76 Aligned_cols=120 Identities=10% Similarity=0.106 Sum_probs=69.2
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcc-hHHHHHHHHHHHHHHhhhhhhhHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSE-QAHHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~E-ta~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
+...|+++|.|+.+. .|....- .-+...-..|++.+... ++ +..++.+...++.++- ..++..+
T Consensus 78 lA~~a~~~G~~~~i~-----~p~~~~~--------~k~~~~~~~GA~v~~~~-~~~~~~~~~~~a~~l~~~~-~~~~~~~ 142 (296)
T PRK11761 78 LAMIAAIKGYRMKLI-----MPENMSQ--------ERRAAMRAYGAELILVP-KEQGMEGARDLALQMQAEG-EGKVLDQ 142 (296)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHHcCCEEEEeC-CCCChHHHHHHHHHHHhcc-CCEecCC
Confidence 556799999999986 3433322 33344455799999998 43 3335544444433321 1111111
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHHhc--CCcEEEEEcCCchHH----HHHHhcCCCCCEEEEeCch
Q psy6272 408 VFEDLCALACPPLDPAHSIVIACVNAALKC--QAVAIIVITCSGYSA----KLVSKYRPQCPILAVSSLG 471 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~ia~aav~~a~~~--~a~aIvv~T~sG~tA----~~isk~RP~~pIiavt~~~ 471 (547)
|+. +..+..-...-+.|+.+++ ..++||+.+-+|.+. +.+..++|.+.|++|-+..
T Consensus 143 -~~n-------~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~ 204 (296)
T PRK11761 143 -FAN-------PDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEE 204 (296)
T ss_pred -CCC-------hhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 110 0001000112334666666 379999999999766 4556678999999999964
No 250
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=65.03 E-value=1.1e+02 Score=29.94 Aligned_cols=113 Identities=16% Similarity=0.137 Sum_probs=73.6
Q ss_pred ChhhHHHH-HHHHHcCCcEEEEc-----ccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHh---hHHHHHhh-cCEEE
Q psy6272 238 ADRDKHVV-DLIVREAVDIIIMS-----SVTGANSIREMRGMLEDHVDRVLILAKIETLLGME---YMDEIIME-SDGVV 307 (547)
Q Consensus 238 t~~D~~di-~~~~~~g~d~I~~s-----fV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~---nldeIl~~-~DgIm 307 (547)
+..|..++ +...+.|+++|.+. |=.+.++++.+++.. ++.|+.| ..+. .+++..+. +|||.
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v-----~iPi~~~----~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAV-----SLPVLRK----DFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhc-----CCCEEEC----CeecCHHHHHHHHHcCCCEEE
Confidence 34455554 46667899999763 335778888888764 4666655 1222 34444444 79999
Q ss_pred EcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcch
Q psy6272 308 LNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQ 384 (547)
Q Consensus 308 IargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Et 384 (547)
++=-|+. . ..-+.+++.+...|.-+++.+. + . .++..+...|+|.+.++ +.+
T Consensus 100 l~~~~~~----~----~~~~~~~~~~~~~g~~~~v~v~-----~---~--------~e~~~~~~~g~~~i~~t-~~~ 151 (217)
T cd00331 100 LIVAALD----D----EQLKELYELARELGMEVLVEVH-----D---E--------EELERALALGAKIIGIN-NRD 151 (217)
T ss_pred EeeccCC----H----HHHHHHHHHHHHcCCeEEEEEC-----C---H--------HHHHHHHHcCCCEEEEe-CCC
Confidence 8755554 1 2335577778889998876533 2 2 55677888899999888 543
No 251
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=64.93 E-value=68 Score=33.25 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCcEEEEc------ccCChhhHHHH-HHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-----cCEEEEc
Q psy6272 242 KHVVDLIVREAVDIIIMS------SVTGANSIREM-RGMLEDHVDRVLILAKIETLLGMEYMDEIIME-----SDGVVLN 309 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~s------fV~sa~di~~~-r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-----~DgImIa 309 (547)
...+++.++.|+|+|++. +-=|.++-+++ +...+..+.++.|++.+-+ +.+.--+.++. +|++|+-
T Consensus 29 ~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~--~t~~ai~~a~~a~~~Gadav~~~ 106 (296)
T TIGR03249 29 RENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG--NTSDAIEIARLAEKAGADGYLLL 106 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCc--cHHHHHHHHHHHHHhCCCEEEEC
Confidence 455679999999999874 33344444444 4455555667889998742 34433333333 4999988
Q ss_pred CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 310 RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 310 rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
+--+.- ...+.+...-+.+.+ +.+.|+++-
T Consensus 107 pP~y~~-~s~~~i~~~f~~v~~---a~~~pvilY 136 (296)
T TIGR03249 107 PPYLIN-GEQEGLYAHVEAVCE---STDLGVIVY 136 (296)
T ss_pred CCCCCC-CCHHHHHHHHHHHHh---ccCCCEEEE
Confidence 765432 234566666666644 457898875
No 252
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=64.91 E-value=31 Score=37.17 Aligned_cols=86 Identities=16% Similarity=0.199 Sum_probs=45.6
Q ss_pred CceEEEEecCHHHHh-hHHHHHhhc---------CEEEEcCCccccc--CChHHHHHHHHHHHHHHHHcCCcEEEEcCCC
Q psy6272 280 RVLILAKIETLLGME-YMDEIIMES---------DGVVLNRIQLAVA--TSVEVTFLAQKMIAARCNKQGKPFLVVGDIL 347 (547)
Q Consensus 280 ~i~IiakIEt~~av~-nldeIl~~~---------DgImIargDLg~e--~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~L 347 (547)
+..|+.| .|+. .++|++.++ +.++.-||=-+.+ ++...+- -..|...-+..+.|||+
T Consensus 208 ~kPVllk----~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~d--l~ai~~lk~~~~lPVi~----- 276 (352)
T PRK13396 208 DKPVLLK----RGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLD--LSVIPVLRSLTHLPIMI----- 276 (352)
T ss_pred CCeEEEe----CCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcC--HHHHHHHHHhhCCCEEE-----
Confidence 3445554 3554 566665553 5677777654443 2321111 11122222345899998
Q ss_pred CCCCcccc-cccCccchhhHH-HHHHhCccEEeeCC
Q psy6272 348 PDHNVEEY-SDVSIGDMNDVN-SIVQDGADVVVLTQ 381 (547)
Q Consensus 348 e~PtraE~-~~~~~~~~~Dv~-nav~~g~D~vmLsk 381 (547)
+||.+-- .|.. ..++ .|+..|||++|+-+
T Consensus 277 -DpsH~~G~sd~~----~~~a~AAva~GAdGliIE~ 307 (352)
T PRK13396 277 -DPSHGTGKSEYV----PSMAMAAIAAGTDSLMIEV 307 (352)
T ss_pred -CCcccCCcHHHH----HHHHHHHHhhCCCeEEEEe
Confidence 8886432 1110 1122 67889999999954
No 253
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=64.87 E-value=1.4e+02 Score=29.06 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=61.2
Q ss_pred HHHHHHHcCCcEEEEcc----------------cCChhhHHHHHHHHHhcCCCceEEEEecC----H-HHHhhHHHHHhh
Q psy6272 244 VVDLIVREAVDIIIMSS----------------VTGANSIREMRGMLEDHVDRVLILAKIET----L-LGMEYMDEIIME 302 (547)
Q Consensus 244 di~~~~~~g~d~I~~sf----------------V~sa~di~~~r~~l~~~~~~i~IiakIEt----~-~av~nldeIl~~ 302 (547)
..+.+.+.|+|+|-+.+ .++.+-+.++-+.+.+.-. +.+.+|+-- . +..+-+..+.+.
T Consensus 72 aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~~~~l~~~ 150 (231)
T cd02801 72 AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLELAKALEDA 150 (231)
T ss_pred HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHHHHHHHHh
Confidence 34566677999997753 2344444444444433222 567777631 1 222222323222
Q ss_pred -cCEEEEcCCcccc-cCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHh-CccEEee
Q psy6272 303 -SDGVVLNRIQLAV-ATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQD-GADVVVL 379 (547)
Q Consensus 303 -~DgImIargDLg~-e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~-g~D~vmL 379 (547)
+|+|-+.-+.-.. ..+...+.. +-..++..+.|++....+- .. .|+..++.. |+|++|+
T Consensus 151 Gvd~i~v~~~~~~~~~~~~~~~~~----~~~i~~~~~ipvi~~Ggi~------~~--------~d~~~~l~~~gad~V~i 212 (231)
T cd02801 151 GASALTVHGRTREQRYSGPADWDY----IAEIKEAVSIPVIANGDIF------SL--------EDALRCLEQTGVDGVMI 212 (231)
T ss_pred CCCEEEECCCCHHHcCCCCCCHHH----HHHHHhCCCCeEEEeCCCC------CH--------HHHHHHHHhcCCCEEEE
Confidence 4777665432110 111112211 1122234578999866532 23 777788887 8999999
Q ss_pred C
Q psy6272 380 T 380 (547)
Q Consensus 380 s 380 (547)
.
T Consensus 213 g 213 (231)
T cd02801 213 G 213 (231)
T ss_pred c
Confidence 8
No 254
>PRK07476 eutB threonine dehydratase; Provisional
Probab=64.60 E-value=70 Score=33.55 Aligned_cols=119 Identities=15% Similarity=0.153 Sum_probs=73.9
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHH
Q psy6272 328 MIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 328 ~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
.+...|++.|.|+.+. .|..+.. .-+...-..|++.+... ++..++++...+++++-. ..|..+
T Consensus 81 alA~~a~~~G~~~~i~-----vp~~~~~--------~k~~~~~~~GA~V~~~~--~~~~~~~~~a~~~~~~~g-~~~~~~ 144 (322)
T PRK07476 81 ALAYAARALGIRATIC-----MSRLVPA--------NKVDAIRALGAEVRIVG--RSQDDAQAEVERLVREEG-LTMVPP 144 (322)
T ss_pred HHHHHHHHhCCCEEEE-----eCCCCCH--------HHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHhcC-CEEeCC
Confidence 3667899999998885 4443333 44455667899987775 344466666666554321 111111
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCch
Q psy6272 408 VFEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLG 471 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~ 471 (547)
|. .+ ...+.....+.|+..++ +.++||+-+-+|.++--++ .+.|...|++|-+..
T Consensus 145 -~~-------n~-~~~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~ 204 (322)
T PRK07476 145 -FD-------DP-RIIAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMER 204 (322)
T ss_pred -CC-------Cc-ceeechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11 11 12222345566777666 4688999999998876554 468999999999863
No 255
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=64.47 E-value=1.1e+02 Score=31.60 Aligned_cols=115 Identities=18% Similarity=0.253 Sum_probs=74.3
Q ss_pred hHHHHHHHHHcCCcEEEE-cccC-----------ChhhHHHHHHHHHhcCCCceEEEEecCHHH----HhhHHHHHhh--
Q psy6272 241 DKHVVDLIVREAVDIIIM-SSVT-----------GANSIREMRGMLEDHVDRVLILAKIETLLG----MEYMDEIIME-- 302 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~-sfV~-----------sa~di~~~r~~l~~~~~~i~IiakIEt~~a----v~nldeIl~~-- 302 (547)
-...+..|...|+|||-+ .|+. ++.++-+.|+.| +.+++|++-|--+-+ -..++|++..
T Consensus 91 ~~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l---~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~ 167 (257)
T TIGR00259 91 AVAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLL---GSEVKILADIVVKHAVHLGNRDLESIALDTV 167 (257)
T ss_pred CHHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHc---CCCcEEEeceeecccCcCCCCCHHHHHHHHH
Confidence 356788888999999988 5553 334555555555 468999986644333 3467887773
Q ss_pred ----cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEe
Q psy6272 303 ----SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVV 378 (547)
Q Consensus 303 ----~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vm 378 (547)
+|||++.=--=|.+..++.+..+.+ ..-..|+++++.+= | ..+..++.. +|++.
T Consensus 168 ~~~~aDavivtG~~TG~~~d~~~l~~vr~------~~~~~PvllggGvt--~-------------eNv~e~l~~-adGvi 225 (257)
T TIGR00259 168 ERGLADAVILSGKTTGTEVDLELLKLAKE------TVKDTPVLAGSGVN--L-------------ENVEELLSI-ADGVI 225 (257)
T ss_pred HhcCCCEEEECcCCCCCCCCHHHHHHHHh------ccCCCeEEEECCCC--H-------------HHHHHHHhh-CCEEE
Confidence 6999999555555555555543221 12358999998752 2 445555543 88888
Q ss_pred eC
Q psy6272 379 LT 380 (547)
Q Consensus 379 Ls 380 (547)
.+
T Consensus 226 Vg 227 (257)
T TIGR00259 226 VA 227 (257)
T ss_pred EC
Confidence 87
No 256
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=64.43 E-value=28 Score=34.04 Aligned_cols=67 Identities=18% Similarity=0.248 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-++.+.+.+.+.+.++.+-+.-+.... +|+++++.-+|.|+.+-.. +..+..+-+.|+++++|++.+
T Consensus 76 Ka~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~ 142 (202)
T TIGR02356 76 KVEVAAQRLRELNSDIQVTALKERVTA-ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISA 142 (202)
T ss_pred HHHHHHHHHHHhCCCCEEEEehhcCCH-HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 345556667666766665554333332 5788888889998887433 235667889999999999986
No 257
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=64.31 E-value=21 Score=37.04 Aligned_cols=86 Identities=10% Similarity=0.141 Sum_probs=57.8
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHh-hcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIM-ESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~-~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
-++.+.+.+.+.|.++.|.+ ++..---+|+++++. -.|.|+.+-+++. ....+.+.|+++++|++.+.
T Consensus 85 Kve~~~~rl~~INP~~~V~~-i~~~i~~e~~~~ll~~~~D~VIdaiD~~~----------~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 85 KAEVMAERIRQINPECRVTV-VDDFITPDNVAEYMSAGFSYVIDAIDSVR----------PKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred HHHHHHHHHHhHCCCcEEEE-EecccChhhHHHHhcCCCCEEEEcCCCHH----------HHHHHHHHHHHcCCCEEEEC
Confidence 45566667766677766554 333223457777775 3688887744432 34458889999999999875
Q ss_pred CCCC--CCCcccccccCccchhhHHHHH
Q psy6272 345 DILP--DHNVEEYSDVSIGDMNDVNSIV 370 (547)
Q Consensus 345 q~Le--~PtraE~~~~~~~~~~Dv~nav 370 (547)
..-. +||+-++ +|+....
T Consensus 154 Gag~k~dp~~~~~--------~di~~t~ 173 (268)
T PRK15116 154 GAGGQIDPTQIQV--------VDLAKTI 173 (268)
T ss_pred CcccCCCCCeEEE--------Eeeeccc
Confidence 5544 9999998 7776553
No 258
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=64.14 E-value=72 Score=33.44 Aligned_cols=98 Identities=15% Similarity=0.154 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCcEEEEcc-------cCChhhHHHHHHHHHhcCCCceEEEEec---CHHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMSS-------VTGANSIREMRGMLEDHVDRVLILAKIE---TLLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf-------V~sa~di~~~r~~l~~~~~~i~IiakIE---t~~av~nldeIl~~-~DgImIar 310 (547)
...+++.++.|+++|++.= ....|-.+-++...+..+.++.||+.+= |.++++....--+. +|++|+-+
T Consensus 32 ~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~ 111 (309)
T cd00952 32 ARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGR 111 (309)
T ss_pred HHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECC
Confidence 4556788999999998732 2223333334445555667899999884 45555555544444 69999886
Q ss_pred CcccccCChHHHHHHHHHHHHHHHHc-CCcEEEE
Q psy6272 311 IQLAVATSVEVTFLAQKMIAARCNKQ-GKPFLVV 343 (547)
Q Consensus 311 gDLg~e~~~e~v~~~qk~ii~~c~~~-gKPvi~a 343 (547)
-..-- ...+.+...-+.|. .+. +.|+++-
T Consensus 112 P~y~~-~~~~~l~~yf~~va---~a~~~lPv~iY 141 (309)
T cd00952 112 PMWLP-LDVDTAVQFYRDVA---EAVPEMAIAIY 141 (309)
T ss_pred CcCCC-CCHHHHHHHHHHHH---HhCCCCcEEEE
Confidence 54321 23456666666554 456 6899874
No 259
>PRK10717 cysteine synthase A; Provisional
Probab=63.92 E-value=70 Score=33.60 Aligned_cols=123 Identities=14% Similarity=0.111 Sum_probs=70.2
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcch-H--HHHHHHHHHHHHHhhhhhhh
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQ-A--HHRVDILKEILKKTESVLWE 405 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Et-a--~eaV~~m~~I~~~aE~~~~~ 405 (547)
+...|+.+|.|+.+. .|....- .-+...-..|++.+... +.. . ...++...++.++.++....
T Consensus 79 lA~~a~~~G~~~~vv-----~p~~~~~--------~k~~~~~~~GA~V~~~~-~~~~~~~~~~~~~a~~~a~~~~~~~~~ 144 (330)
T PRK10717 79 LALVAAARGYKTVIV-----MPETQSQ--------EKKDLLRALGAELVLVP-AAPYANPNNYVKGAGRLAEELVASEPN 144 (330)
T ss_pred HHHHHHHcCCcEEEE-----eCCCCCH--------HHHHHHHHcCCEEEEeC-CcccccccchHHHHHHHHHHHHhhCCC
Confidence 556789999999886 3433322 33445566799999887 531 1 01233333444443221000
Q ss_pred HHHHHHhhhcCCCCCChhhH---HHHHHHHHHHhcC--CcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCch
Q psy6272 406 KQVFEDLCALACPPLDPAHS---IVIACVNAALKCQ--AVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLG 471 (547)
Q Consensus 406 ~~~f~~~~~~~~~~~~~~~~---ia~aav~~a~~~~--a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~ 471 (547)
..| ...+..++... -...+.|+..+++ .++||+-.-+|.++.-++ .++|++.|++|-+..
T Consensus 145 -~~~-----~~~~~~~~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~ 213 (330)
T PRK10717 145 -GAI-----WANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTG 213 (330)
T ss_pred -CeE-----ecCCCCChhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 000 00011111111 2244666777764 799999999998877555 457999999999864
No 260
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=63.53 E-value=28 Score=32.44 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=42.9
Q ss_pred HHhhHHHHHhh--cC--EEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCc
Q psy6272 292 GMEYMDEIIME--SD--GVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNV 352 (547)
Q Consensus 292 av~nldeIl~~--~D--gImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~Ptr 352 (547)
.++++++.+.. .| .+++|-.|+....+.+++....+.++..+++.|.++++.|. .|.+
T Consensus 47 ~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~---~p~~ 108 (183)
T cd04501 47 MLVRFYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASP---LPVD 108 (183)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeC---CCcC
Confidence 34445443322 35 46677889988788899998889999999999999888775 5554
No 261
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=63.12 E-value=1.2e+02 Score=32.55 Aligned_cols=90 Identities=13% Similarity=0.201 Sum_probs=61.6
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhh-HHHHHhhcCEEEEcCCcccccCChH
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEY-MDEIIMESDGVVLNRIQLAVATSVE 320 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~n-ldeIl~~~DgImIargDLg~e~~~e 320 (547)
...|+..-+.|+|.|-++ |.+.+++..+.++-++. ++.++|-|-=. -+- ++.+-.-.|.+=|.||..|..
T Consensus 39 v~QI~~L~~aG~dIVRvt-v~~~e~A~A~~~Ik~~~--~vPLVaDiHf~--~rla~~~~~~g~~k~RINPGNig~~---- 109 (361)
T COG0821 39 VAQIKALERAGCDIVRVT-VPDMEAAEALKEIKQRL--NVPLVADIHFD--YRLALEAAECGVDKVRINPGNIGFK---- 109 (361)
T ss_pred HHHHHHHHHcCCCEEEEe-cCCHHHHHHHHHHHHhC--CCCEEEEeecc--HHHHHHhhhcCcceEEECCcccCcH----
Confidence 344566667899998877 67777777776665543 78999977422 111 112222269999999998852
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 321 VTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 321 ~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
.--+.++++|+++|||+=+.
T Consensus 110 ---~~v~~vVe~Ak~~g~piRIG 129 (361)
T COG0821 110 ---DRVREVVEAAKDKGIPIRIG 129 (361)
T ss_pred ---HHHHHHHHHHHHcCCCEEEe
Confidence 24567899999999997553
No 262
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=63.05 E-value=63 Score=34.59 Aligned_cols=119 Identities=15% Similarity=0.156 Sum_probs=74.8
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|++.|.|+.+. .|..+.. ..+...-..|++.++.. .+..++.+...+++++-... |..+
T Consensus 63 lA~~a~~~G~~~~iv-----~p~~~~~--------~k~~~~~~~GA~V~~~~--~~~~~a~~~a~~~~~~~~~~-~~~~- 125 (380)
T TIGR01127 63 VAYAAKKFGIKAVIV-----MPESAPP--------SKVKATKSYGAEVILHG--DDYDEAYAFATSLAEEEGRV-FVHP- 125 (380)
T ss_pred HHHHHHHcCCCEEEE-----EcCCCcH--------HHHHHHHHCCCEEEEEC--CCHHHHHHHHHHHHHhcCCE-ecCC-
Confidence 667899999999885 4443333 44555667899987654 45557776666665543221 1111
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh----cCCCCCEEEEeCchh
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVSK----YRPQCPILAVSSLGY 472 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~~~~ 472 (547)
|++ + .....-..-+.|+..++ ..++||+..-+|.+..-+++ ++|...|++|-+...
T Consensus 126 ~~~-------~-~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~ 186 (380)
T TIGR01127 126 FDD-------E-FVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA 186 (380)
T ss_pred CCC-------h-hhhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 111 0 11121233445666666 58999999999988765554 579999999999653
No 263
>PLN02535 glycolate oxidase
Probab=62.95 E-value=99 Score=33.55 Aligned_cols=99 Identities=17% Similarity=0.134 Sum_probs=55.2
Q ss_pred CChhhHHHHHHHHHhcCCCceEEEE-ecCHHHHhhHHHHHhh-cCEEEEcCCcccccC--ChHHHHHHHHHHHHHHHHcC
Q psy6272 262 TGANSIREMRGMLEDHVDRVLILAK-IETLLGMEYMDEIIME-SDGVVLNRIQLAVAT--SVEVTFLAQKMIAARCNKQG 337 (547)
Q Consensus 262 ~sa~di~~~r~~l~~~~~~i~Iiak-IEt~~av~nldeIl~~-~DgImIargDLg~e~--~~e~v~~~qk~ii~~c~~~g 337 (547)
-+-++++.+|+.. +..|++| |-+++-... .+.. +|+|.+.- --|-.+ ++..+..+ .++.+.+ .-.
T Consensus 210 ~tW~~i~~lr~~~-----~~PvivKgV~~~~dA~~---a~~~GvD~I~vsn-~GGr~~d~~~~t~~~L-~ev~~av-~~~ 278 (364)
T PLN02535 210 LSWKDIEWLRSIT-----NLPILIKGVLTREDAIK---AVEVGVAGIIVSN-HGARQLDYSPATISVL-EEVVQAV-GGR 278 (364)
T ss_pred CCHHHHHHHHhcc-----CCCEEEecCCCHHHHHH---HHhcCCCEEEEeC-CCcCCCCCChHHHHHH-HHHHHHH-hcC
Confidence 3567777777743 3567776 444433222 2223 68888751 112222 22221111 1122211 225
Q ss_pred CcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 338 KPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 338 KPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
.|+|....+- .- .|++.++..|||+|++. .....
T Consensus 279 ipVi~dGGIr------~g--------~Dv~KALalGA~aV~vG-r~~l~ 312 (364)
T PLN02535 279 VPVLLDGGVR------RG--------TDVFKALALGAQAVLVG-RPVIY 312 (364)
T ss_pred CCEEeeCCCC------CH--------HHHHHHHHcCCCEEEEC-HHHHh
Confidence 8999876642 24 89999999999999998 66544
No 264
>PRK06815 hypothetical protein; Provisional
Probab=62.92 E-value=68 Score=33.54 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=72.5
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+.+|.|+.+. .|..+.- .-+...-..|++.+... ++ ..++.+...+++++-.. +|.. -
T Consensus 83 lA~~a~~~G~~~~i~-----~p~~~~~--------~k~~~~~~~GA~V~~~~-~~-~~~~~~~a~~~~~~~~~-~~~~-~ 145 (317)
T PRK06815 83 VALAAKLAGIPVTVY-----APEQASA--------IKLDAIRALGAEVRLYG-GD-ALNAELAARRAAEQQGK-VYIS-P 145 (317)
T ss_pred HHHHHHHhCCCEEEE-----ECCCCCH--------HHHHHHHHCCCEEEEEC-CC-HHHHHHHHHHHHHhcCC-EEec-C
Confidence 667899999999886 3433322 34445566799999998 64 33555544444333211 1110 0
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCchh
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLGY 472 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~~ 472 (547)
|+ .+ ...+-....+.|+..++ ..++||+..-+|.+.--++ .+.|...|++|.+...
T Consensus 146 ~~-------~~-~~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~ 206 (317)
T PRK06815 146 YN-------DP-QVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANS 206 (317)
T ss_pred CC-------Ch-hhhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 11 01 11222334566666666 4799999999998775444 4669999999998643
No 265
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=62.77 E-value=84 Score=30.31 Aligned_cols=102 Identities=12% Similarity=0.118 Sum_probs=61.3
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCCccccc
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRIQLAVA 316 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIargDLg~e 316 (547)
+.+.++.+++.|+|+|..|.-. .++...++ .. +..++.- +.+++|+..+ +|.|.+-+...
T Consensus 65 ~~~~~~~a~~~Ga~~i~~p~~~--~~~~~~~~---~~--~~~~i~g------v~t~~e~~~A~~~Gad~i~~~p~~~--- 128 (190)
T cd00452 65 TPEQADAAIAAGAQFIVSPGLD--PEVVKAAN---RA--GIPLLPG------VATPTEIMQALELGADIVKLFPAEA--- 128 (190)
T ss_pred CHHHHHHHHHcCCCEEEcCCCC--HHHHHHHH---Hc--CCcEECC------cCCHHHHHHHHHCCCCEEEEcCCcc---
Confidence 4556888999999999877432 23333333 22 3455553 3355665554 69998866432
Q ss_pred CChHHHHHHHHHHHHHHHHc-CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 317 TSVEVTFLAQKMIAARCNKQ-GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 317 ~~~e~v~~~qk~ii~~c~~~-gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.|.+-+.. + +... +.|++....+ .. .++..+...|+|++.++
T Consensus 129 ~g~~~~~~----l---~~~~~~~p~~a~GGI-------~~--------~n~~~~~~~G~~~v~v~ 171 (190)
T cd00452 129 VGPAYIKA----L---KGPFPQVRFMPTGGV-------SL--------DNAAEWLAAGVVAVGGG 171 (190)
T ss_pred cCHHHHHH----H---HhhCCCCeEEEeCCC-------CH--------HHHHHHHHCCCEEEEEc
Confidence 14333222 2 2223 4787776553 12 66777888899999998
No 266
>PRK09224 threonine dehydratase; Reviewed
Probab=62.70 E-value=72 Score=35.93 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=73.5
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|++.|.|+.+. .|..+.. .-+...-..|++.++.. ++-.++.+...++.++ +...+.. -
T Consensus 83 vA~aa~~lGi~~~Iv-----mP~~tp~--------~K~~~~r~~GA~Vi~~g--~~~~~a~~~a~~l~~~-~g~~~v~-~ 145 (504)
T PRK09224 83 VALSAARLGIKAVIV-----MPVTTPD--------IKVDAVRAFGGEVVLHG--DSFDEAYAHAIELAEE-EGLTFIH-P 145 (504)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHh-cCCEEeC-C
Confidence 667899999998875 3433223 33344556799987775 4555777766666554 2211111 0
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHH----HhcCCCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKCQ--AVAIIVITCSGYSAKLV----SKYRPQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~~--a~aIvv~T~sG~tA~~i----sk~RP~~pIiavt~~~ 471 (547)
|++ ......-..-+.|+..++. .++|++..-+|.++.-+ ..++|...|++|-+..
T Consensus 146 f~~--------~~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~ 206 (504)
T PRK09224 146 FDD--------PDVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPED 206 (504)
T ss_pred CCC--------cHHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 110 1112222333567777764 68999999999776544 4578999999999854
No 267
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=62.37 E-value=1.2e+02 Score=30.05 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCC---------------hhhHHHHHHHHHhcCCCceEEEEecCHHH----HhhHHHHHhh
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTG---------------ANSIREMRGMLEDHVDRVLILAKIETLLG----MEYMDEIIME 302 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~s---------------a~di~~~r~~l~~~~~~i~IiakIEt~~a----v~nldeIl~~ 302 (547)
.++++.+.+.|+|.|.+++--+ .+.+....+++.+.|. .+..-+|+.-. .+.+.++++.
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~--~v~~~~~~~~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGL--EVEGSLEDAFGCKTDPEYVLEVAKA 154 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC--eEEEEEEeecCCCCCHHHHHHHHHH
Confidence 6678999999999999998655 2333344444455554 44444543332 2223333332
Q ss_pred -----cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEE
Q psy6272 303 -----SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVV 377 (547)
Q Consensus 303 -----~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~v 377 (547)
+|.|.++ |-.-.+.++++...-+.+.+.... +|+.+.++ ++.--| + .-...|+..|+|.+
T Consensus 155 ~~~~g~~~i~l~--Dt~G~~~P~~v~~li~~l~~~~~~--~~~~~H~H--n~~gla-~--------an~laA~~aG~~~i 219 (265)
T cd03174 155 LEEAGADEISLK--DTVGLATPEEVAELVKALREALPD--VPLGLHTH--NTLGLA-V--------ANSLAALEAGADRV 219 (265)
T ss_pred HHHcCCCEEEec--hhcCCcCHHHHHHHHHHHHHhCCC--CeEEEEeC--CCCChH-H--------HHHHHHHHcCCCEE
Confidence 4677765 333334445555544444333321 78888765 111111 1 33346778888766
Q ss_pred ee
Q psy6272 378 VL 379 (547)
Q Consensus 378 mL 379 (547)
=-
T Consensus 220 d~ 221 (265)
T cd03174 220 DG 221 (265)
T ss_pred Ee
Confidence 43
No 268
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=62.26 E-value=11 Score=41.31 Aligned_cols=48 Identities=21% Similarity=0.383 Sum_probs=40.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHH
Q psy6272 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKL 103 (547)
Q Consensus 55 tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~ 103 (547)
-.+-+.+|+.-++.+.++.|+++|+|+.=|. +|+..+...+ +++.+|+
T Consensus 142 l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~-~v~~ik~ 190 (404)
T PRK06843 142 LRVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIE-LVKKIKT 190 (404)
T ss_pred eEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCCCCChhHHH-HHHHHHh
Confidence 4566777887667899999999999999999 9998777777 7777776
No 269
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=62.19 E-value=12 Score=39.83 Aligned_cols=47 Identities=17% Similarity=0.441 Sum_probs=37.7
Q ss_pred eEEEe--cCCCCCCHHHHHHHHHhCC--cEEeec-cCCCHHHHHHHHHHHHHH
Q psy6272 56 NIMAT--VGENNNSVDLIKLMLRSGV--NILRIP-THSSKLYQVEKILKNVKL 103 (547)
Q Consensus 56 kIi~T--iGpas~~~e~l~~li~aGm--~v~RiN-sHg~~e~~~~~~i~~ir~ 103 (547)
+++|- +|....+.+.+.+|+++|+ |+.=|+ +||..+...+ +|+.||+
T Consensus 85 ~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e-~I~~ir~ 136 (326)
T PRK05458 85 GLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVIN-MIQHIKK 136 (326)
T ss_pred ccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHH-HHHHHHh
Confidence 44554 4555567899999999966 999999 9988888887 8888886
No 270
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=62.16 E-value=66 Score=31.98 Aligned_cols=103 Identities=11% Similarity=0.202 Sum_probs=63.5
Q ss_pred HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHH
Q psy6272 245 VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFL 324 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~ 324 (547)
.+..++.|+..|=++| ++++-.+.++.+-++. .+ ++.-.=|..-.+.+++.++.---+++.|+
T Consensus 22 a~al~~gGi~~iEit~-~tp~a~~~I~~l~~~~-~~--~~vGAGTVl~~e~a~~ai~aGA~FivSP~------------- 84 (201)
T PRK06015 22 ARALAAGGLPAIEITL-RTPAALDAIRAVAAEV-EE--AIVGAGTILNAKQFEDAAKAGSRFIVSPG------------- 84 (201)
T ss_pred HHHHHHCCCCEEEEeC-CCccHHHHHHHHHHHC-CC--CEEeeEeCcCHHHHHHHHHcCCCEEECCC-------------
Confidence 4556667788777777 4666666665544333 23 22233344444455555555333444432
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 325 AQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 325 ~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
....+++.|+++|+|++=..- . - +++..|...|+|.+=+-
T Consensus 85 ~~~~vi~~a~~~~i~~iPG~~---T-----p--------tEi~~A~~~Ga~~vK~F 124 (201)
T PRK06015 85 TTQELLAAANDSDVPLLPGAA---T-----P--------SEVMALREEGYTVLKFF 124 (201)
T ss_pred CCHHHHHHHHHcCCCEeCCCC---C-----H--------HHHHHHHHCCCCEEEEC
Confidence 446689999999999874311 1 2 67789999999999886
No 271
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=62.11 E-value=1.6e+02 Score=29.71 Aligned_cols=119 Identities=12% Similarity=0.185 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHH---Hh--------hHHHHHhh-----c
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLG---ME--------YMDEIIME-----S 303 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a---v~--------nldeIl~~-----~ 303 (547)
+..++++..++.|++.|++... ..++.+.++++.+..+.+ |+.-|....+ .. ++.+.++. +
T Consensus 86 rs~e~v~~~l~~Ga~kvvigt~-a~~~~~~l~~~~~~fg~~--ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~ 162 (234)
T PRK13587 86 RTKSQIMDYFAAGINYCIVGTK-GIQDTDWLKEMAHTFPGR--IYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPL 162 (234)
T ss_pred CCHHHHHHHHHCCCCEEEECch-HhcCHHHHHHHHHHcCCC--EEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCC
Confidence 3577899999999999987642 234555555555554444 4444665444 10 12233322 3
Q ss_pred CEEEEcCCcc-cccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 304 DGVVLNRIQL-AVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 304 DgImIargDL-g~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.++++---|- |..-| ..+..+. +.++..+.|++.+..+- + . .|+..+...|+|++++.
T Consensus 163 ~~ii~tdi~~dGt~~G-~~~~li~----~l~~~~~ipvi~~GGi~---s---~--------edi~~l~~~G~~~vivG 221 (234)
T PRK13587 163 GGIIYTDIAKDGKMSG-PNFELTG----QLVKATTIPVIASGGIR---H---Q--------QDIQRLASLNVHAAIIG 221 (234)
T ss_pred CEEEEecccCcCCCCc-cCHHHHH----HHHHhCCCCEEEeCCCC---C---H--------HHHHHHHHcCCCEEEEh
Confidence 4555542221 11111 1222222 22345689999988732 2 2 67777777899999998
No 272
>PRK09389 (R)-citramalate synthase; Provisional
Probab=61.98 E-value=2.6e+02 Score=31.42 Aligned_cols=138 Identities=12% Similarity=0.168 Sum_probs=84.8
Q ss_pred CCChhhHHHH-HHHHHcCCcEEEEc-ccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cC--EEEEcC
Q psy6272 236 VIADRDKHVV-DLIVREAVDIIIMS-SVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SD--GVVLNR 310 (547)
Q Consensus 236 ~lt~~D~~di-~~~~~~g~d~I~~s-fV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~D--gImIar 310 (547)
.+|..++..| +...+.|+|.|=+. ++.+..|.+.++.+.+. +.+..|.+-.-.. .+.++..++. .| .++++-
T Consensus 20 ~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~~d~e~v~~i~~~-~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~ 96 (488)
T PRK09389 20 SLTPEEKLEIARKLDELGVDVIEAGSAITSEGEREAIKAVTDE-GLNAEICSFARAV--KVDIDAALECDVDSVHLVVPT 96 (488)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEEeCCcCCHHHHHHHHHHHhc-CCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEcc
Confidence 3455665554 56677999999774 45778888888776653 4456666665442 2335544444 35 355555
Q ss_pred Ccccc----cCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHH-HHHhCccEEeeCCcchH
Q psy6272 311 IQLAV----ATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNS-IVQDGADVVVLTQSEQA 385 (547)
Q Consensus 311 gDLg~----e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~n-av~~g~D~vmLsk~Eta 385 (547)
.|+-+ -...++....-...++.|+++|..|.+... +-+|++. ..+-+++. +...|+|.+.|. +|.
T Consensus 97 Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~e---d~~r~~~-----~~l~~~~~~~~~~Ga~~i~l~--DTv 166 (488)
T PRK09389 97 SDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGE---DASRADL-----DFLKELYKAGIEAGADRICFC--DTV 166 (488)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEe---eCCCCCH-----HHHHHHHHHHHhCCCCEEEEe--cCC
Confidence 55522 223455555566788999999998877543 5555554 11244443 345699999996 554
Q ss_pred H
Q psy6272 386 H 386 (547)
Q Consensus 386 ~ 386 (547)
=
T Consensus 167 G 167 (488)
T PRK09389 167 G 167 (488)
T ss_pred C
Confidence 3
No 273
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=61.85 E-value=14 Score=39.26 Aligned_cols=47 Identities=13% Similarity=0.241 Sum_probs=40.8
Q ss_pred eEEEecCCCCCCHHHHHHHHHhC--CcEEeec-cCCCHHHHHHHHHHHHHH
Q psy6272 56 NIMATVGENNNSVDLIKLMLRSG--VNILRIP-THSSKLYQVEKILKNVKL 103 (547)
Q Consensus 56 kIi~TiGpas~~~e~l~~li~aG--m~v~RiN-sHg~~e~~~~~~i~~ir~ 103 (547)
-..+++|-..++.+.+..|+++| .|+.=+. |||......+ +++.+|+
T Consensus 84 ~v~~SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~-~i~~i~~ 133 (321)
T TIGR01306 84 FASISVGVKACEYEFVTQLAEEALTPEYITIDIAHGHSNSVIN-MIKHIKT 133 (321)
T ss_pred EEEEEcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCchHHHHH-HHHHHHH
Confidence 46777788888899999999999 6999999 9999888887 8887776
No 274
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=61.77 E-value=10 Score=42.51 Aligned_cols=44 Identities=16% Similarity=0.515 Sum_probs=37.5
Q ss_pred ecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHH
Q psy6272 60 TVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLA 104 (547)
Q Consensus 60 TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a 104 (547)
.+|....+.+.++.|+++|+++.-|| +||......+ +|+.||+.
T Consensus 235 avg~~~~~~~~~~~l~~ag~d~i~id~a~G~s~~~~~-~i~~ik~~ 279 (495)
T PTZ00314 235 AISTRPEDIERAAALIEAGVDVLVVDSSQGNSIYQID-MIKKLKSN 279 (495)
T ss_pred EECCCHHHHHHHHHHHHCCCCEEEEecCCCCchHHHH-HHHHHHhh
Confidence 66876677899999999999999999 9998877777 78887763
No 275
>PF00677 Lum_binding: Lumazine binding domain; InterPro: IPR001783 The following proteins have been shown [, ] to be structurally and evolutionary related: Riboflavin synthase alpha chain (2.5.1.9 from EC) (RS-alpha) (gene ribC in Escherichia coli, ribB in Bacillus subtilis and Photobacterium leiognathi, RIB5 in yeast. This enzyme synthesises riboflavin from two moles of 6,7- dimethyl-8-(1'-D-ribityl)lumazine (Lum), a pteridine-derivative. Photobacterium phosphoreum lumazine protein (LumP) (gene luxL). LumP is a protein that modulates the colour of the bioluminescence emission of bacterial luciferase. In the presence of LumP, light emission is shifted to higher energy values (shorter wavelength). LumP binds non-covalently to 6,7-dimethyl-8-(1'-D-ribityl)lumazine. Vibrio fischeri yellow fluorescent protein (YFP) (gene luxY). Like LumP, YFP modulates light emission but towards a longer wavelength. YFP binds non-covalently to FMN. These proteins seem to have evolved from the duplication of a domain of about 100 residues. In its C-terminal section, this domain contains a conserved motif [KR]-V-N-[LI]-E which has been proposed to be the binding site for lumazine (Lum) and some of its derivatives. RS-alpha which binds two molecules of Lum has two perfect copies of this motif, while LumP which binds one molecule of Lum, has a Glu instead of Lys/Arg in the first position of the second copy of the motif. Similarly, YFP, which binds to one molecule of FMN, also seems to have a potentially dysfunctional binding site by substitution of Gly for Glu in the last position of the first copy of the motif.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process; PDB: 3DDY_A 1KZL_A 3A3G_B 3A35_B 3A3B_B 1I8D_C 1PKV_B 1HZE_B 1I18_B.
Probab=61.74 E-value=30 Score=29.43 Aligned_cols=57 Identities=14% Similarity=0.181 Sum_probs=41.8
Q ss_pred CccEEEecCC-CcccccCCCCEEEEeceeEEEEEEEeCCeEEEEEE-------eCcEeCCCceeee
Q psy6272 170 TVKRLFVDSM-ELPKRVIPDDIVYIDRNIKLKVVEKENNDVHCTVI-------RGGKLMDNQLVTV 227 (547)
Q Consensus 170 ~~~~i~v~~~-~~~~~v~~Gd~I~idD~I~l~V~~v~~~~v~~~V~-------~gG~L~s~Kginl 227 (547)
+...+.+..+ ..+..+.+|+.|-+|- ++|.|.++.++.+..-+. +=|.++.+.-||+
T Consensus 18 ~~~~~~i~~~~~~~~~~~~g~SIavnG-vcLTV~~~~~~~f~~~l~~eTl~~T~l~~~~~G~~VNl 82 (85)
T PF00677_consen 18 DSQRLRIEIPDKILSDLKIGGSIAVNG-VCLTVTDINEDWFEVDLIPETLRRTTLGNLKVGDRVNL 82 (85)
T ss_dssp SEEEEEEEESTGGGGTG-TTSEEEETT-EEEEEEEEETTEEEEEEEHHHHHCSSGGG--TTSEEEE
T ss_pred CCEEEEEEcCHHHHhhCccCcEEEECC-eeeEEEEecCCEEEEechHHHhhhchhccCCCCCEEEE
Confidence 3445666666 7889999999999998 778899999999887773 5566666666665
No 276
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=61.54 E-value=2.2e+02 Score=30.08 Aligned_cols=32 Identities=19% Similarity=0.341 Sum_probs=23.3
Q ss_pred HcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhC-ccEEeeC
Q psy6272 335 KQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDG-ADVVVLT 380 (547)
Q Consensus 335 ~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g-~D~vmLs 380 (547)
..+.||+....+- .. .|...++..| +|.|++.
T Consensus 290 ~v~iPVi~~G~i~------t~--------~~a~~~l~~g~aD~V~lg 322 (338)
T cd04733 290 VTKTPLMVTGGFR------TR--------AAMEQALASGAVDGIGLA 322 (338)
T ss_pred HcCCCEEEeCCCC------CH--------HHHHHHHHcCCCCeeeeC
Confidence 3589999876532 12 5666788876 8999998
No 277
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=61.41 E-value=1.6e+02 Score=30.76 Aligned_cols=123 Identities=15% Similarity=0.224 Sum_probs=75.2
Q ss_pred CCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCccc
Q psy6272 235 PVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLA 314 (547)
Q Consensus 235 p~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg 314 (547)
|.++-+++ ++.|.+.| -.|..-.+.+.+.++.+.+..++. +..+|.++ ++..+.
T Consensus 2 ~lv~~k~l--l~~A~~~~-yaV~AfN~~n~e~~~avi~AAe~~--~sPvIl~~-~~~~~~-------------------- 55 (283)
T PRK07998 2 PLVNGRIL--LDRIQEKH-VLAGAFNTTNLETTISILNAIERS--GLPNFIQI-APTNAQ-------------------- 55 (283)
T ss_pred CCCcHHHH--HHHHHHCC-CEEEEEeeCCHHHHHHHHHHHHHh--CCCEEEEC-cHhHHh--------------------
Confidence 44554443 56677766 567777788888888887777654 33455454 222221
Q ss_pred ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcch--HHHHHHHH
Q psy6272 315 VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQ--AHHRVDIL 392 (547)
Q Consensus 315 ~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Et--a~eaV~~m 392 (547)
-.|.+ .+-..+...+++++.||.+... .. ... .++..|+..|++.||.- |-. --|-|+.-
T Consensus 56 -~~g~~---~~~~~~~~~A~~~~vPV~lHLD----H~-~~~--------e~i~~Ai~~GftSVM~D-gS~l~~eeNi~~T 117 (283)
T PRK07998 56 -LSGYD---YIYEIVKRHADKMDVPVSLHLD----HG-KTF--------EDVKQAVRAGFTSVMID-GAALPFEENIAFT 117 (283)
T ss_pred -hCCHH---HHHHHHHHHHHHCCCCEEEECc----CC-CCH--------HHHHHHHHcCCCEEEEe-CCCCCHHHHHHHH
Confidence 11222 2444566778899999998432 11 133 77889999999999995 322 22666666
Q ss_pred HHHHHHhhh
Q psy6272 393 KEILKKTES 401 (547)
Q Consensus 393 ~~I~~~aE~ 401 (547)
.++.+.+.+
T Consensus 118 ~~vve~Ah~ 126 (283)
T PRK07998 118 KEAVDFAKS 126 (283)
T ss_pred HHHHHHHHH
Confidence 666665554
No 278
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=61.36 E-value=1.1e+02 Score=31.62 Aligned_cols=94 Identities=7% Similarity=0.007 Sum_probs=54.4
Q ss_pred HHHHHHHHHcCCcEEEEc------ccCChhhHHHHHH-HHHhcCCCceEEEEecC---HHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMS------SVTGANSIREMRG-MLEDHVDRVLILAKIET---LLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~s------fV~sa~di~~~r~-~l~~~~~~i~IiakIEt---~~av~nldeIl~~-~DgImIar 310 (547)
.+.+++.++.|+|+|++. +-=|.++-.++-+ ..+..+ + |++.+-+ .++++-...--+. +||+|+.+
T Consensus 23 ~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~--vi~gvg~~~~~~ai~~a~~a~~~Gad~v~v~~ 99 (279)
T cd00953 23 KKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K--VIFQVGSLNLEESIELARAAKSFGIYAIASLP 99 (279)
T ss_pred HHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C--EEEEeCcCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 344678899999999884 2234444444443 444333 2 7787753 3444433333333 59999866
Q ss_pred CcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 311 IQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 311 gDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-.+-...+.+.+...-+.+.+ +.|+++-
T Consensus 100 P~y~~~~~~~~i~~yf~~v~~-----~lpv~iY 127 (279)
T cd00953 100 PYYFPGIPEEWLIKYFTDISS-----PYPTFIY 127 (279)
T ss_pred CcCCCCCCHHHHHHHHHHHHh-----cCCEEEE
Confidence 554322234566666666655 7898874
No 279
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=61.24 E-value=1.6e+02 Score=30.64 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=68.2
Q ss_pred HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCC-ceEEEEecCHHHHhhHHHHHhhcCEEEE--cC-CcccccCCh
Q psy6272 244 VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDR-VLILAKIETLLGMEYMDEIIMESDGVVL--NR-IQLAVATSV 319 (547)
Q Consensus 244 di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~-i~IiakIEt~~av~nldeIl~~~DgImI--ar-gDLg~e~~~ 319 (547)
-++.+.+.|+|++++|=. -.+....+....++.|-+ +.+++- -..-+.++.|.+.++|.+- +| |==|++.+.
T Consensus 114 F~~~~~~~GvdGlivpDL-P~ee~~~~~~~~~~~gi~~I~lvaP---tt~~~rl~~i~~~a~GFiY~vs~~GvTG~~~~~ 189 (265)
T COG0159 114 FLRRAKEAGVDGLLVPDL-PPEESDELLKAAEKHGIDPIFLVAP---TTPDERLKKIAEAASGFIYYVSRMGVTGARNPV 189 (265)
T ss_pred HHHHHHHcCCCEEEeCCC-ChHHHHHHHHHHHHcCCcEEEEeCC---CCCHHHHHHHHHhCCCcEEEEecccccCCCccc
Confidence 467777888888888754 234445666666655533 444432 2233678888888876653 33 333333332
Q ss_pred HHHHHHHHHHHHHHHH-cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 320 EVTFLAQKMIAARCNK-QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 320 e~v~~~qk~ii~~c~~-~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
...-++.+++.|+ .++|+.+.=. .-++ .++...... ||++...
T Consensus 190 ---~~~~~~~v~~vr~~~~~Pv~vGFG---Is~~-----------e~~~~v~~~-ADGVIVG 233 (265)
T COG0159 190 ---SADVKELVKRVRKYTDVPVLVGFG---ISSP-----------EQAAQVAEA-ADGVIVG 233 (265)
T ss_pred ---chhHHHHHHHHHHhcCCCeEEecC---cCCH-----------HHHHHHHHh-CCeEEEc
Confidence 2223445566665 4899887544 2222 555666666 9999998
No 280
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=60.95 E-value=41 Score=29.68 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=50.8
Q ss_pred CChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEE
Q psy6272 262 TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFL 341 (547)
Q Consensus 262 ~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi 341 (547)
.|.--++++++++++.|-+..|.+. ++..+++.+.-.|.|+++| .+....+++-+.|...|+||.
T Consensus 12 SSs~la~km~~~a~~~gi~~~i~a~-----~~~e~~~~~~~~Dvill~P----------Qv~~~~~~i~~~~~~~~ipv~ 76 (99)
T cd05565 12 TSGLLANALNKGAKERGVPLEAAAG-----AYGSHYDMIPDYDLVILAP----------QMASYYDELKKDTDRLGIKLV 76 (99)
T ss_pred CHHHHHHHHHHHHHHCCCcEEEEEe-----eHHHHHHhccCCCEEEEcC----------hHHHHHHHHHHHhhhcCCCEE
Confidence 3445578899999988877666654 5556777777789999883 566777888889999999998
Q ss_pred E
Q psy6272 342 V 342 (547)
Q Consensus 342 ~ 342 (547)
+
T Consensus 77 ~ 77 (99)
T cd05565 77 T 77 (99)
T ss_pred E
Confidence 6
No 281
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=60.81 E-value=37 Score=35.27 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=44.9
Q ss_pred HHHHHHHHHcCCcEEEEcccC------ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCC
Q psy6272 242 KHVVDLIVREAVDIIIMSSVT------GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRI 311 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~------sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIarg 311 (547)
.++.+.+.+.|+|+|.++--. ....+..+.+......+++.||+- -|+.+-.++++. +|+||+||.
T Consensus 183 ~~~a~~a~~~G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~----GGI~~~~d~~kal~lGAd~V~ig~~ 258 (299)
T cd02809 183 PEDALRAVDAGADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLD----GGIRRGTDVLKALALGADAVLIGRP 258 (299)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEe----CCCCCHHHHHHHHHcCCCEEEEcHH
Confidence 455788999999999996411 112333343333323346788874 566666666666 799999997
Q ss_pred ccc
Q psy6272 312 QLA 314 (547)
Q Consensus 312 DLg 314 (547)
-|.
T Consensus 259 ~l~ 261 (299)
T cd02809 259 FLY 261 (299)
T ss_pred HHH
Confidence 764
No 282
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=60.70 E-value=1.6e+02 Score=31.89 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=55.8
Q ss_pred hHHHHHHHHHcCCcEEEEcccCCh---------------hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh---
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGA---------------NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--- 302 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa---------------~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--- 302 (547)
..+|++.+++.|++.|.+.+--|. +.+....++..+.|..+.+-+.-.++.-.+.+.++++.
T Consensus 77 ~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~ 156 (378)
T PRK11858 77 VKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEE 156 (378)
T ss_pred CHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHh
Confidence 466789999999999888765444 23333444555566555444333333334555555544
Q ss_pred --cCEEEEcCCc-ccccCChHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 303 --SDGVVLNRIQ-LAVATSVEVTFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 303 --~DgImIargD-Lg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
+|.|.++ | .|.- .++++...-+.+. +..+.|+.+.++
T Consensus 157 ~Ga~~I~l~--DT~G~~-~P~~v~~lv~~l~---~~~~~~l~~H~H 196 (378)
T PRK11858 157 AGADRVRFC--DTVGIL-DPFTMYELVKELV---EAVDIPIEVHCH 196 (378)
T ss_pred CCCCEEEEe--ccCCCC-CHHHHHHHHHHHH---HhcCCeEEEEec
Confidence 3555554 4 3333 3344444444333 233789988876
No 283
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=60.67 E-value=40 Score=36.10 Aligned_cols=94 Identities=17% Similarity=0.167 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCcEEEEccc---------CChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEE
Q psy6272 242 KHVVDLIVREAVDIIIMSSV---------TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVL 308 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV---------~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImI 308 (547)
.++.+.+.+.|+|+|.+|.- .+.+-+.++++.+.+.+.++.||+- -|+.|=.+|++. +|+++|
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~----GGIr~G~Dv~kalaLGA~aV~i 299 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVD----GGVRRGTDVLKALCLGAKAVGL 299 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEe----CCCCCHHHHHHHHHcCCCEEEE
Confidence 67788999999999999862 2334455666655454556777773 677777777766 799999
Q ss_pred cCCcccccC--ChH----HHHHHHHHHHHHHHHcCCc
Q psy6272 309 NRIQLAVAT--SVE----VTFLAQKMIAARCNKQGKP 339 (547)
Q Consensus 309 argDLg~e~--~~e----~v~~~qk~ii~~c~~~gKP 339 (547)
||.=|-.-. |.+ .+..+++++-......|..
T Consensus 300 G~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~ 336 (344)
T cd02922 300 GRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVT 336 (344)
T ss_pred CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 998765332 333 3334556666666666643
No 284
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=60.49 E-value=1.7e+02 Score=30.58 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHHHcCCcEEEEccc----------------CChhhHHHHHHHHHhcCCCceEEEEec-----CHHHHhhHHHHHhh-
Q psy6272 245 VDLIVREAVDIIIMSSV----------------TGANSIREMRGMLEDHVDRVLILAKIE-----TLLGMEYMDEIIME- 302 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV----------------~sa~di~~~r~~l~~~~~~i~IiakIE-----t~~av~nldeIl~~- 302 (547)
.+.+.+.|+|+|=+.+= ++++-+.++.+.+.+. -.+.+.+||- +..-...+-..+..
T Consensus 81 a~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~-~~~pv~vKir~g~~~~~~~~~~~a~~l~~~ 159 (319)
T TIGR00737 81 AKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDA-VDIPVTVKIRIGWDDAHINAVEAARIAEDA 159 (319)
T ss_pred HHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhh-cCCCEEEEEEcccCCCcchHHHHHHHHHHh
Confidence 34566789999866432 1222222222223221 2477899982 22111122222222
Q ss_pred -cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHH-HhCccEEeeC
Q psy6272 303 -SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIV-QDGADVVVLT 380 (547)
Q Consensus 303 -~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav-~~g~D~vmLs 380 (547)
+|+|-+....-. -++.. +.....+-...+..++||+....+. .. .|+..++ ..|+|+||+.
T Consensus 160 G~d~i~vh~r~~~--~~~~~-~~~~~~i~~i~~~~~ipvi~nGgI~------~~--------~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 160 GAQAVTLHGRTRA--QGYSG-EANWDIIARVKQAVRIPVIGNGDIF------SP--------EDAKAMLETTGCDGVMIG 222 (319)
T ss_pred CCCEEEEEccccc--ccCCC-chhHHHHHHHHHcCCCcEEEeCCCC------CH--------HHHHHHHHhhCCCEEEEC
Confidence 588877421111 11110 0112222233344679999876643 23 6777777 5689999997
No 285
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=60.42 E-value=83 Score=33.41 Aligned_cols=146 Identities=21% Similarity=0.296 Sum_probs=89.8
Q ss_pred ChhhHHHHHHHHH-cC-CcEEEEc----ccC-------ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh--
Q psy6272 238 ADRDKHVVDLIVR-EA-VDIIIMS----SVT-------GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-- 302 (547)
Q Consensus 238 t~~D~~di~~~~~-~g-~d~I~~s----fV~-------sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-- 302 (547)
++.+..|....++ .+ +|+|-+. .+. +++.+..+.+.+.+. .++.+++||= + -+.++++|++.
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielNiScPnt~g~~~l~~~~e~l~~l~~~vk~~-~~~Pv~vKl~-P-~~~di~~iA~~~~ 183 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELNISCPNTPGGRALGQDPELLEKLLEAVKAA-TKVPVFVKLA-P-NITDIDEIAKAAE 183 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEEccCCCCCChhhhccCHHHHHHHHHHHHhc-ccCceEEEeC-C-CHHHHHHHHHHHH
Confidence 4666666665554 44 6887653 222 233333333334332 3588999995 3 56677777766
Q ss_pred ---cCEEEEcC-------Cccccc-------CC----hHHHHHHHHHHHHHHHHcC--CcEEEEcCCCCCCCcccccccC
Q psy6272 303 ---SDGVVLNR-------IQLAVA-------TS----VEVTFLAQKMIAARCNKQG--KPFLVVGDILPDHNVEEYSDVS 359 (547)
Q Consensus 303 ---~DgImIar-------gDLg~e-------~~----~e~v~~~qk~ii~~c~~~g--KPvi~aTq~Le~PtraE~~~~~ 359 (547)
+|||..-= .|+... .| ..-.+.+-+.+-+.++..+ .|+|-...+. ..
T Consensus 184 ~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~al~~v~~l~~~~~~~ipIIGvGGI~------s~---- 253 (310)
T COG0167 184 EAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIALRVVAELYKRLGGDIPIIGVGGIE------TG---- 253 (310)
T ss_pred HcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHHHHHHHHHHHHhcCCCCcEEEecCcC------cH----
Confidence 38876431 344431 11 1345566776777777877 9988876644 35
Q ss_pred ccchhhHHHHHHhCccEEeeCCcchHH--HHHHHHHHHHHHhhhhh
Q psy6272 360 IGDMNDVNSIVQDGADVVVLTQSEQAH--HRVDILKEILKKTESVL 403 (547)
Q Consensus 360 ~~~~~Dv~nav~~g~D~vmLsk~Eta~--eaV~~m~~I~~~aE~~~ 403 (547)
.|+...++.||+.+.+. |+. +-.....+|.+..++.+
T Consensus 254 ----~DA~E~i~aGA~~vQv~---Tal~~~Gp~i~~~I~~~l~~~l 292 (310)
T COG0167 254 ----EDALEFILAGASAVQVG---TALIYKGPGIVKEIIKGLARWL 292 (310)
T ss_pred ----HHHHHHHHcCCchheee---eeeeeeCchHHHHHHHHHHHHH
Confidence 89999999999999887 444 55555666666655543
No 286
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=59.92 E-value=23 Score=36.66 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHH--HhhHHHHHhh-cCEEEEcC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLG--MEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a--v~nldeIl~~-~DgImIar 310 (547)
...+.+..+++.|+|+|.+..+ ++++++++.+.+.....+++++|= -| .+|+.++++. +|+|.++.
T Consensus 191 ~t~eea~~A~~~gaD~I~ld~~-~p~~l~~~~~~~~~~~~~i~i~As----GGI~~~ni~~~~~~Gvd~I~vsa 259 (272)
T cd01573 191 DSLEEALAAAEAGADILQLDKF-SPEELAELVPKLRSLAPPVLLAAA----GGINIENAAAYAAAGADILVTSA 259 (272)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHhccCCCceEEEE----CCCCHHHHHHHHHcCCcEEEECh
Confidence 3456777888999999999766 446777777766543345665552 23 3788888888 89997764
No 287
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=59.91 E-value=84 Score=34.32 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=74.7
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccE--EeeCCcchHHHHHHHHHHHHHHhhhhhhhH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADV--VVLTQSEQAHHRVDILKEILKKTESVLWEK 406 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~--vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~ 406 (547)
+...|+..|.|+.+. .|..+.. .-+...-..|++. +.+. +++..++++...+++++-.. .+..
T Consensus 79 ~A~~a~~~G~~~~iv-----~p~~~~~--------~k~~~~~~~GA~vv~v~~~-g~~~~~a~~~a~~~~~~~g~-~~~~ 143 (409)
T TIGR02079 79 FAYACRHLGVHGTVF-----MPATTPK--------QKIDRVKIFGGEFIEIILV-GDTFDQCAAAAREHVEDHGG-TFIP 143 (409)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHHcCCCeeEEEEe-CCCHHHHHHHHHHHHHhcCC-EEeC
Confidence 667799999999886 4444333 3344556679984 4556 66666777666665544221 1111
Q ss_pred HHHHHhhhcCCCCCChhhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCch
Q psy6272 407 QVFEDLCALACPPLDPAHSIVIACVNAALKCQ--AVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLG 471 (547)
Q Consensus 407 ~~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~--a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~ 471 (547)
+ |++ + .....-..-+.|+..+++ .++||+..-+|.+..-++ .++|...|++|-+..
T Consensus 144 ~-~~~-------~-~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~ 205 (409)
T TIGR02079 144 P-FDD-------P-RIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEG 205 (409)
T ss_pred C-CCC-------H-hHhhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 0 110 0 112222344777777774 799999999988776554 458999999999964
No 288
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=59.80 E-value=71 Score=33.01 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=56.9
Q ss_pred CChhhHHH-HHHHHHcC-CcEEEEcccCCh--hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcC--
Q psy6272 237 IADRDKHV-VDLIVREA-VDIIIMSSVTGA--NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNR-- 310 (547)
Q Consensus 237 lt~~D~~d-i~~~~~~g-~d~I~~sfV~sa--~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIar-- 310 (547)
+.+.+.++ ++.++..+ +|+|++|=..+. -|.+.++.+-+....-..+++ +--..+|+.++++.+||++|+-
T Consensus 154 l~~~~~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvllg---gGvt~eNv~e~l~~adGviVgS~~ 230 (257)
T TIGR00259 154 LGNRDLESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAG---SGVNLENVEELLSIADGVIVATTI 230 (257)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEE---CCCCHHHHHHHHhhCCEEEECCCc
Confidence 56666655 55666776 999999998776 456666554332222233333 4556789999999999999985
Q ss_pred ---CcccccCChHHHHHHHH
Q psy6272 311 ---IQLAVATSVEVTFLAQK 327 (547)
Q Consensus 311 ---gDLg~e~~~e~v~~~qk 327 (547)
|+..-....+++....+
T Consensus 231 K~~G~~~n~~D~~rV~~Fm~ 250 (257)
T TIGR00259 231 KKDGVFNNFVDQARVSQFVE 250 (257)
T ss_pred ccCCccCCCcCHHHHHHHHH
Confidence 33333455566655544
No 289
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=59.71 E-value=53 Score=35.47 Aligned_cols=90 Identities=11% Similarity=0.227 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 265 NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 265 ~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
+..+.++++..+. .+.+++-+-....++-+.+ .+|.+-||-+++.- -.++..+-+.||||++.|
T Consensus 169 e~l~~L~~~~~~~--Gl~~~t~v~d~~~~~~l~~---~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk~ 232 (360)
T PRK12595 169 EGLKILKQVADEY--GLAVISEIVNPADVEVALD---YVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLKR 232 (360)
T ss_pred HHHHHHHHHHHHc--CCCEEEeeCCHHHHHHHHH---hCCeEEECcccccC-----------HHHHHHHHccCCcEEEeC
Confidence 4566666666543 5778887777776666555 48999999887763 246666778899999999
Q ss_pred CCCCCCCcccccccCccchhhHHHHHH-hCccEEeeC
Q psy6272 345 DILPDHNVEEYSDVSIGDMNDVNSIVQ-DGADVVVLT 380 (547)
Q Consensus 345 q~Le~PtraE~~~~~~~~~~Dv~nav~-~g~D~vmLs 380 (547)
.|. +|-.|+ -.+++.+. .|.+-++|.
T Consensus 233 G~~--~t~~e~--------~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 233 GLS--ATIEEF--------IYAAEYIMSQGNGQIILC 259 (360)
T ss_pred CCC--CCHHHH--------HHHHHHHHHCCCCCEEEE
Confidence 973 455566 66666665 466556664
No 290
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=59.53 E-value=2.2e+02 Score=29.65 Aligned_cols=111 Identities=6% Similarity=-0.050 Sum_probs=65.7
Q ss_pred hhhHHHHHHHHHcC-----CcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCE--EEEcC
Q psy6272 239 DRDKHVVDLIVREA-----VDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDG--VVLNR 310 (547)
Q Consensus 239 ~~D~~di~~~~~~g-----~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~Dg--ImIar 310 (547)
+.-.+.++...+.| ++.|=++- -+.+|.+.++..+....+...+.+- .+--.+.++..++. .|. ++++=
T Consensus 21 ~~Kv~i~~~L~~~G~~~~~v~~IE~~s-~~~~d~~~v~~~~~~~~~~~~v~~~--~r~~~~die~A~~~g~~~v~i~~s~ 97 (279)
T cd07947 21 EQIVKIYDYLHELGGGSGVIRQTEFFL-YTEKDREAVEACLDRGYKFPEVTGW--IRANKEDLKLVKEMGLKETGILMSV 97 (279)
T ss_pred HHHHHHHHHHHHcCCCCCccceEEecC-cChHHHHHHHHHHHcCCCCCEEEEE--ecCCHHHHHHHHHcCcCEEEEEEcC
Confidence 33355667888899 99885532 2558899999888542112334432 22223334444443 453 33333
Q ss_pred Ccccc----cCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccc
Q psy6272 311 IQLAV----ATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEY 355 (547)
Q Consensus 311 gDLg~----e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~ 355 (547)
.|+-. ....++.....+.+++.|+.+|+.|-+.- |+++|++.
T Consensus 98 S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~---ed~~r~d~ 143 (279)
T cd07947 98 SDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL---EDITRADI 143 (279)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE---EcccCCCc
Confidence 33211 23346677777789999999999887754 47777754
No 291
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=59.53 E-value=9.1 Score=41.45 Aligned_cols=101 Identities=18% Similarity=0.310 Sum_probs=56.1
Q ss_pred hhhHHHHHH-HHHcCCcEEEEcccCC---------hhh--------HHHHHHHHHhcC--CCceEEEEecCHHHHhhHHH
Q psy6272 239 DRDKHVVDL-IVREAVDIIIMSSVTG---------ANS--------IREMRGMLEDHV--DRVLILAKIETLLGMEYMDE 298 (547)
Q Consensus 239 ~~D~~di~~-~~~~g~d~I~~sfV~s---------a~d--------i~~~r~~l~~~~--~~i~IiakIEt~~av~nlde 298 (547)
....+++.. +.+.|+|+|.++=-+- .++ +.++.++|.+.+ +++.+++- -++.+-++
T Consensus 213 ~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~s----Ggl~t~~d 288 (368)
T PF01645_consen 213 GRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIAS----GGLRTGDD 288 (368)
T ss_dssp STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEE----SS--SHHH
T ss_pred CCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEe----CCccCHHH
Confidence 344555554 8899999999864432 233 566777887665 45777762 45666666
Q ss_pred HHhh----cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccc
Q psy6272 299 IIME----SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEY 355 (547)
Q Consensus 299 Il~~----~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~ 355 (547)
++++ +|++-+||+=| +.+| .....+|+....|++++|| +|.....
T Consensus 289 v~kalaLGAD~v~igt~~l-iAlG--------C~~~~~C~~~~CP~Giatq---~~~l~~~ 337 (368)
T PF01645_consen 289 VAKALALGADAVYIGTAAL-IALG--------CIQCRKCHTGTCPVGIATQ---DPKLRKR 337 (368)
T ss_dssp HHHHHHCT-SEEE-SHHHH-HHCT----------S---CCCT--TTSSS------CCHH--
T ss_pred HHHHHhcCCCeeEecchhh-hhcc--------hHHHhcccCCCCCceeeec---Ccccccc
Confidence 6666 79999998755 2233 3355778888999999999 8876544
No 292
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=59.45 E-value=44 Score=33.67 Aligned_cols=161 Identities=14% Similarity=0.108 Sum_probs=79.4
Q ss_pred HHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHh--hhhhhhHHHHH
Q psy6272 333 CNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKT--ESVLWEKQVFE 410 (547)
Q Consensus 333 c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~a--E~~~~~~~~f~ 410 (547)
++..+.|+++...+- + . .|+..++..|+|+++++ .+. .+....+.++.++. |+....-..+.
T Consensus 70 ~~~~~ipv~~~GGi~---s---~--------~~~~~~l~~Ga~~Viig-t~~-l~~p~~~~ei~~~~g~~~iv~slD~~~ 133 (253)
T PRK02083 70 AEQVFIPLTVGGGIR---S---V--------EDARRLLRAGADKVSIN-SAA-VANPELISEAADRFGSQCIVVAIDAKR 133 (253)
T ss_pred HHhCCCCEEeeCCCC---C---H--------HHHHHHHHcCCCEEEEC-hhH-hhCcHHHHHHHHHcCCCCEEEEEEecc
Confidence 344578999876632 2 3 77777788899999998 433 23445566665554 22111000000
Q ss_pred -----HhhhcCCCCCChhhHHHHHHHHHHHhcCCcEEEE--EcCCch-------HHHHHHhcCCCCCEEEEeCc---hhc
Q psy6272 411 -----DLCALACPPLDPAHSIVIACVNAALKCQAVAIIV--ITCSGY-------SAKLVSKYRPQCPILAVSSL---GYV 473 (547)
Q Consensus 411 -----~~~~~~~~~~~~~~~ia~aav~~a~~~~a~aIvv--~T~sG~-------tA~~isk~RP~~pIiavt~~---~~~ 473 (547)
...-.........+.-....++.+.+.+++.|++ +++.|. ....+.+ ....||||---- ++.
T Consensus 134 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~-~~~ipvia~GGv~s~~d~ 212 (253)
T PRK02083 134 DPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSD-AVNVPVIASGGAGNLEHF 212 (253)
T ss_pred CCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHh-hCCCCEEEECCCCCHHHH
Confidence 0000000000111112233445556789998888 335452 2233333 346899997643 334
Q ss_pred cccccccccceEEeecCCCCCCCCCCHHHHHHHHHHHHHHcCC
Q psy6272 474 CRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGI 516 (547)
Q Consensus 474 ar~l~l~~GV~p~~~~~~~~~~~~~d~d~~I~~a~~~~k~~g~ 516 (547)
.+.+.. -|+..++....... . ...+..+.+++++.|+
T Consensus 213 ~~~~~~-~G~~gvivg~al~~---~--~~~~~~~~~~~~~~~~ 249 (253)
T PRK02083 213 VEAFTE-GGADAALAASIFHF---G--EITIGELKAYLAEQGI 249 (253)
T ss_pred HHHHHh-CCccEEeEhHHHHc---C--CCCHHHHHHHHHHCCC
Confidence 333322 46666554321100 0 1123455677777776
No 293
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=59.32 E-value=44 Score=35.05 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=50.7
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEE--ecCHHHHhhHHHHHhh-cCEEEEcC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAK--IETLLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~Iiak--IEt~~av~nldeIl~~-~DgImIar 310 (547)
...+.+..+++.|+|+|.+-.. +.++++++...+.+.+.++.+.|- | -.+|+.+.++. +|+|-++.
T Consensus 204 ~tleea~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~~~~i~leAsGGI----t~~ni~~ya~tGvD~Isvgs 272 (288)
T PRK07428 204 ETLEQVQEALEYGADIIMLDNM-PVDLMQQAVQLIRQQNPRVKIEASGNI----TLETIRAVAETGVDYISSSA 272 (288)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhcCCCeEEEEECCC----CHHHHHHHHHcCCCEEEEch
Confidence 4577788999999999999954 678888888887655566655542 3 25688888887 79998875
No 294
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=59.31 E-value=33 Score=34.66 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=52.8
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
-++.+++.+.+.+.++.|.+.-+... -+|+++++.. .|.|+.+-.++ .....+.+.|+++++|+|.+.
T Consensus 66 Kae~~~~~l~~inP~~~V~~~~~~i~-~~~~~~l~~~~~D~VvdaiD~~----------~~k~~L~~~c~~~~ip~I~s~ 134 (231)
T cd00755 66 KVEVMAERIRDINPECEVDAVEEFLT-PDNSEDLLGGDPDFVVDAIDSI----------RAKVALIAYCRKRKIPVISSM 134 (231)
T ss_pred HHHHHHHHHHHHCCCcEEEEeeeecC-HhHHHHHhcCCCCEEEEcCCCH----------HHHHHHHHHHHHhCCCEEEEe
Confidence 35666777777777766655433222 2577887753 68888773332 244568899999999999874
Q ss_pred CCCC--CCCcccc
Q psy6272 345 DILP--DHNVEEY 355 (547)
Q Consensus 345 q~Le--~PtraE~ 355 (547)
-.=. +||+-++
T Consensus 135 g~g~~~dp~~i~i 147 (231)
T cd00755 135 GAGGKLDPTRIRV 147 (231)
T ss_pred CCcCCCCCCeEEE
Confidence 4333 8998788
No 295
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=59.21 E-value=2.2e+02 Score=30.72 Aligned_cols=137 Identities=15% Similarity=0.199 Sum_probs=74.0
Q ss_pred CChhhH-HHHHHHHHcCCcEEEE-cccCCh------hhHHHHHHHHHhc-CCCceEEEEecCHHHHhhHHHHHhh-cCE-
Q psy6272 237 IADRDK-HVVDLIVREAVDIIIM-SSVTGA------NSIREMRGMLEDH-VDRVLILAKIETLLGMEYMDEIIME-SDG- 305 (547)
Q Consensus 237 lt~~D~-~di~~~~~~g~d~I~~-sfV~sa------~di~~~r~~l~~~-~~~i~IiakIEt~~av~nldeIl~~-~Dg- 305 (547)
++.+++ +.++...+.|++.|=+ ||| ++ .|.+++.+.+... +.++..++ =+.++++.. ++. .|.
T Consensus 65 ~s~e~Ki~ia~~L~~~GV~~IEvGs~v-spk~vPqmad~~ev~~~i~~~~~~~~~~l~--~n~~die~A---~~~g~~~v 138 (347)
T PLN02746 65 VPTSVKVELIQRLVSSGLPVVEATSFV-SPKWVPQLADAKDVMAAVRNLEGARFPVLT--PNLKGFEAA---IAAGAKEV 138 (347)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCc-CcccccccccHHHHHHHHHhccCCceeEEc--CCHHHHHHH---HHcCcCEE
Confidence 344554 4456677799999965 566 43 2434444334332 22333333 245554443 333 454
Q ss_pred -EEEcCCccc----ccCChHHHHHHHHHHHHHHHHcCCcEE--EEcCC-CCCCCcccccccCccchhhHH-HHHHhCccE
Q psy6272 306 -VVLNRIQLA----VATSVEVTFLAQKMIAARCNKQGKPFL--VVGDI-LPDHNVEEYSDVSIGDMNDVN-SIVQDGADV 376 (547)
Q Consensus 306 -ImIargDLg----~e~~~e~v~~~qk~ii~~c~~~gKPvi--~aTq~-Le~PtraE~~~~~~~~~~Dv~-nav~~g~D~ 376 (547)
+++.-.|+= .....++.....+++++.|+++|..|. +++.. .++.+|.+. ..+-+++ .+...|+|.
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~-----~~l~~~~~~~~~~Gad~ 213 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPP-----SKVAYVAKELYDMGCYE 213 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCH-----HHHHHHHHHHHHcCCCE
Confidence 333333321 123456777777789999999999884 22110 113333332 1124444 577789999
Q ss_pred EeeCCcchHH
Q psy6272 377 VVLTQSEQAH 386 (547)
Q Consensus 377 vmLsk~Eta~ 386 (547)
+.|. +|+=
T Consensus 214 I~l~--DT~G 221 (347)
T PLN02746 214 ISLG--DTIG 221 (347)
T ss_pred EEec--CCcC
Confidence 9997 6655
No 296
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=59.05 E-value=15 Score=41.27 Aligned_cols=47 Identities=19% Similarity=0.511 Sum_probs=39.5
Q ss_pred eEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHH
Q psy6272 56 NIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKL 103 (547)
Q Consensus 56 kIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~ 103 (547)
.+=+.+|...++.|-++.|+++|+|+.=++ +||...+..+ +|+.||+
T Consensus 238 ~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~-~i~~ik~ 285 (505)
T PLN02274 238 LVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQGDSIYQLE-MIKYIKK 285 (505)
T ss_pred EEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHH-HHHHHHH
Confidence 344467888888999999999999999999 9998777666 7887776
No 297
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=58.89 E-value=72 Score=31.57 Aligned_cols=103 Identities=14% Similarity=0.245 Sum_probs=58.6
Q ss_pred HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHH
Q psy6272 245 VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFL 324 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~ 324 (547)
.+..++.|+..+=+.| ++++-.+.++.+-++. .++.| -.=|..-.+.++..++.---.++.|+
T Consensus 26 ~~al~~gGi~~iEiT~-~t~~a~~~I~~l~~~~-p~~~v--GAGTV~~~e~a~~a~~aGA~FivSP~------------- 88 (196)
T PF01081_consen 26 AEALIEGGIRAIEITL-RTPNALEAIEALRKEF-PDLLV--GAGTVLTAEQAEAAIAAGAQFIVSPG------------- 88 (196)
T ss_dssp HHHHHHTT--EEEEET-TSTTHHHHHHHHHHHH-TTSEE--EEES--SHHHHHHHHHHT-SEEEESS-------------
T ss_pred HHHHHHCCCCEEEEec-CCccHHHHHHHHHHHC-CCCee--EEEeccCHHHHHHHHHcCCCEEECCC-------------
Confidence 3456677888888877 5555555554443332 33332 22344444555555555333344432
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 325 AQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 325 ~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.-.++++.|+++|.|++=..- | - +++..|...|+|.+=+-
T Consensus 89 ~~~~v~~~~~~~~i~~iPG~~-----T---p--------tEi~~A~~~G~~~vK~F 128 (196)
T PF01081_consen 89 FDPEVIEYAREYGIPYIPGVM-----T---P--------TEIMQALEAGADIVKLF 128 (196)
T ss_dssp --HHHHHHHHHHTSEEEEEES-----S---H--------HHHHHHHHTT-SEEEET
T ss_pred CCHHHHHHHHHcCCcccCCcC-----C---H--------HHHHHHHHCCCCEEEEe
Confidence 346789999999999875311 1 2 77799999999999886
No 298
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=58.88 E-value=75 Score=34.29 Aligned_cols=121 Identities=11% Similarity=0.133 Sum_probs=70.0
Q ss_pred EEeCcEeC-CCceeeeCCC---Cc-CC----CCCChhhHH-HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCce
Q psy6272 213 VIRGGKLM-DNQLVTVPRV---TF-NL----PVIADRDKH-VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVL 282 (547)
Q Consensus 213 V~~gG~L~-s~Kginlp~~---~~-~l----p~lt~~D~~-di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~ 282 (547)
+.+.|+|. +.|.+-+|-= .. +. |...-.|.+ .++.+.+.|+|.++++ .-.++.+......++.
T Consensus 55 l~~~g~l~~tGr~vilpvDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~~~-------~G~l~~~~~~~~~~ip 127 (348)
T PRK09250 55 LLNHGRLAGTGYLSILPVDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVAST-------LGVLEAVARKYAHKIP 127 (348)
T ss_pred HhcccccCCCCCEEEEEcccccccCCccccccCCcccCHHHHHHHHHhcCCCEEEeC-------HHHHHhccccccCCCC
Confidence 34566665 7777777721 11 11 111334555 5678888999999998 3333333333334677
Q ss_pred EEEEecCHHHH-----------hhHHHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 283 ILAKIETLLGM-----------EYMDEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 283 IiakIEt~~av-----------~nldeIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
+|.|+-....+ -..+|-+.. +|+|-+. -.+|-+.- .++..--.+++..|++.|.|++.
T Consensus 128 lIlkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~t-vy~Gs~~E-~~ml~~l~~i~~ea~~~GlPlv~ 197 (348)
T PRK09250 128 FILKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGAT-IYFGSEES-RRQIEEISEAFEEAHELGLATVL 197 (348)
T ss_pred EEEEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEE-EecCCHHH-HHHHHHHHHHHHHHHHhCCCEEE
Confidence 88888765444 235666655 6755443 11221111 23333445689999999999886
No 299
>PRK08198 threonine dehydratase; Provisional
Probab=58.86 E-value=1.3e+02 Score=32.65 Aligned_cols=119 Identities=18% Similarity=0.207 Sum_probs=73.8
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+..|.|+.+. .|...-. .-+...-..||+.++.. ++.-++++...+++++- ..++..+
T Consensus 85 lA~~a~~~G~~~~iv-----~p~~~~~--------~k~~~~~~~GA~Vi~~~--~~~~~~~~~a~~~~~~~-g~~~~~~- 147 (404)
T PRK08198 85 VAYAASLLGIKATIV-----MPETAPL--------SKVKATRSYGAEVVLHG--DVYDEALAKAQELAEET-GATFVHP- 147 (404)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEecCC-
Confidence 556799999999886 3433222 33444566799988765 45557777666665542 2211111
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCchh
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLGY 472 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~~ 472 (547)
|++ + ...+.-...+.|+..++ +.++||+..-+|.+..-++ .+.|...|++|-+...
T Consensus 148 ~~~-------~-~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~ 208 (404)
T PRK08198 148 FDD-------P-DVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGA 208 (404)
T ss_pred CCC-------c-cHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 110 1 11222234556666665 4688999999998765444 5689999999998653
No 300
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=58.75 E-value=72 Score=32.47 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=51.8
Q ss_pred cCEEEEcCCccc--ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH-HHHHhCccEEee
Q psy6272 303 SDGVVLNRIQLA--VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN-SIVQDGADVVVL 379 (547)
Q Consensus 303 ~DgImIargDLg--~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~-nav~~g~D~vmL 379 (547)
.|||++. |--| ..+..++-..+.+.+.+.++ -..|+++.+. .++-.|. -+.+ .+-..|+|++|+
T Consensus 32 v~gi~~~-GstGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv~---~~~~~~~--------i~~a~~a~~~Gad~v~v 98 (281)
T cd00408 32 VDGLVVL-GTTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGVG---ANSTREA--------IELARHAEEAGADGVLV 98 (281)
T ss_pred CCEEEEC-CCCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEecC---CccHHHH--------HHHHHHHHHcCCCEEEE
Confidence 6999876 4332 33444555555555555543 3578887655 4455556 5555 344459999999
Q ss_pred CCcchHH-----HHHHHHHHHHHHhh
Q psy6272 380 TQSEQAH-----HRVDILKEILKKTE 400 (547)
Q Consensus 380 sk~Eta~-----eaV~~m~~I~~~aE 400 (547)
. .+.-. +.++....|+....
T Consensus 99 ~-pP~y~~~~~~~~~~~~~~ia~~~~ 123 (281)
T cd00408 99 V-PPYYNKPSQEGIVAHFKAVADASD 123 (281)
T ss_pred C-CCcCCCCCHHHHHHHHHHHHhcCC
Confidence 8 55332 78888888877644
No 301
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=58.65 E-value=23 Score=35.07 Aligned_cols=62 Identities=6% Similarity=-0.022 Sum_probs=46.4
Q ss_pred EEEecCCEEEEeec--cccccCCCccEEEecCCCcc--cccCCCCEEEEec---eeEEEEEEEeCCeEE
Q psy6272 149 VEIAQGANIVLTAN--QLIETKGTVKRLFVDSMELP--KRVIPDDIVYIDR---NIKLKVVEKENNDVH 210 (547)
Q Consensus 149 i~L~~G~~v~lt~~--~~~~~~~~~~~i~v~~~~~~--~~v~~Gd~I~idD---~I~l~V~~v~~~~v~ 210 (547)
.-++.|+++.++.. ++|..........++-..|. ..+++|++++.+. .+.++|++++++.|+
T Consensus 50 ~G~~~Gd~~~v~l~peeAyGe~d~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~ev~~d~V~ 118 (196)
T PRK10737 50 EGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEITAVEDDHVV 118 (196)
T ss_pred cCCCCCCEEEEEEChHHhcCCCChHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEEEEcCCEEE
Confidence 45678999888764 56666666666777766653 3589999998864 788999999998864
No 302
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=58.51 E-value=1.1e+02 Score=33.46 Aligned_cols=95 Identities=18% Similarity=0.102 Sum_probs=53.1
Q ss_pred ChhhHHHHHHHHHhcCCCceEEEE-ecCHHHHhhHHHHHhh-cCEEEEcCCcccccC----C-hHHHHHHHHHHHHHHHH
Q psy6272 263 GANSIREMRGMLEDHVDRVLILAK-IETLLGMEYMDEIIME-SDGVVLNRIQLAVAT----S-VEVTFLAQKMIAARCNK 335 (547)
Q Consensus 263 sa~di~~~r~~l~~~~~~i~Iiak-IEt~~av~nldeIl~~-~DgImIargDLg~e~----~-~e~v~~~qk~ii~~c~~ 335 (547)
+-+|++.+|+.. +..++.| |-|.+.... .++. +|+|.|+- -=|-.+ + .+-++++.+ +-.
T Consensus 233 tW~di~~lr~~~-----~~pvivKgV~s~~dA~~---a~~~Gvd~I~Vs~-hGGr~~d~~~~t~~~L~~i~~-----a~~ 298 (381)
T PRK11197 233 SWKDLEWIRDFW-----DGPMVIKGILDPEDARD---AVRFGADGIVVSN-HGGRQLDGVLSSARALPAIAD-----AVK 298 (381)
T ss_pred CHHHHHHHHHhC-----CCCEEEEecCCHHHHHH---HHhCCCCEEEECC-CCCCCCCCcccHHHHHHHHHH-----Hhc
Confidence 557777777654 2344444 433333222 2333 68888762 111111 1 122222221 112
Q ss_pred cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 336 QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 336 ~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
.+.||+....+- .- .|++.++..|||++++. ..-..
T Consensus 299 ~~~~vi~dGGIr------~g--------~Di~KALaLGA~~V~iG-r~~l~ 334 (381)
T PRK11197 299 GDITILADSGIR------NG--------LDVVRMIALGADTVLLG-RAFVY 334 (381)
T ss_pred CCCeEEeeCCcC------cH--------HHHHHHHHcCcCceeEh-HHHHH
Confidence 368999877643 35 99999999999999998 55544
No 303
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=58.42 E-value=57 Score=31.90 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 267 IREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 267 i~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
++.+++.|.+.|.++.|-+.-+... ++.++.+.-.|.|+.+..+ ......+-+.|+++|+|++.+.
T Consensus 77 a~a~~~~L~~lNp~v~i~~~~~~~~--~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 77 AEASLERLRALNPRVKVSVDTDDIS--EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred HHHHHHHHHHHCCCCEEEEEecCcc--ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4566777778888877665544443 5567778788999888544 2345567788999999998764
No 304
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=58.07 E-value=44 Score=31.99 Aligned_cols=67 Identities=16% Similarity=0.106 Sum_probs=46.7
Q ss_pred HHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHc-CCcEEEEc
Q psy6272 267 IREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQ-GKPFLVVG 344 (547)
Q Consensus 267 i~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~-gKPvi~aT 344 (547)
++.+++.|.+.+..+.+.+--+.... +|++++++-.|.|+.+-.++ .....+...|.++ ++|++.+.
T Consensus 54 a~~~~~~l~~lnp~v~i~~~~~~~~~-~~~~~~l~~~DlVi~~~d~~----------~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 54 VEALKENLREINPFVKIEAINIKIDE-NNLEGLFGDCDIVVEAFDNA----------ETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHHHHHHHHHCCCCEEEEEEeecCh-hhHHHHhcCCCEEEECCCCH----------HHHHHHHHHHHHHCCCCEEEEe
Confidence 66677778877877777664444333 67888988888888774333 2445567777776 99999863
No 305
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=58.01 E-value=1.1e+02 Score=32.06 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=72.7
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+..|.|+.+. .|....- ..+...-..|++.+... + +..++.+...+++++- ..+|..+
T Consensus 82 lA~~a~~~G~~~~v~-----~p~~~~~--------~k~~~~~~~GA~V~~~~-~-~~~~~~~~a~~~~~~~-g~~~~~~- 144 (317)
T TIGR02991 82 LAYAAAEEGVRATIC-----MSELVPQ--------NKVDEIRRLGAEVRIVG-R-SQDDAQEEVERLVADR-GLTMLPP- 144 (317)
T ss_pred HHHHHHHhCCCEEEE-----cCCCCCH--------HHHHHHHHcCCEEEEeC-C-CHHHHHHHHHHHHHhc-CCEeeCC-
Confidence 566899999999885 4443333 44455566799998887 4 3345555555554431 1111111
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHHh----cCCCCCEEEEeCc
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKCQ-AVAIIVITCSGYSAKLVSK----YRPQCPILAVSSL 470 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~~-a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~~ 470 (547)
|. ..+..+.-..-+.|+..++. .++||+..-+|.+..-+++ ++|...|+++-+.
T Consensus 145 ~~--------n~~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 145 FD--------HPDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred CC--------ChHHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 10 01222333446667777663 5789999999988776665 4699999999885
No 306
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=57.93 E-value=38 Score=31.76 Aligned_cols=65 Identities=18% Similarity=0.143 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCcEEEEcccC---------ChhhHHHHHHHHHhcCCCceEEE--EecCHHHHhhHHHHHhh-cCEEEEcC
Q psy6272 243 HVVDLIVREAVDIIIMSSVT---------GANSIREMRGMLEDHVDRVLILA--KIETLLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~sfV~---------sa~di~~~r~~l~~~~~~i~Iia--kIEt~~av~nldeIl~~-~DgImIar 310 (547)
+++..+.+.|+|+|+++.+. .......++++.+. .++.+++ -| + .+|+.+++.. +||+.+|+
T Consensus 106 ~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pv~a~GGi-~---~~~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 106 EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL--VEIPVVAIGGI-T---PENAAEVLAAGADGVAVIS 179 (196)
T ss_pred HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--CCCCEEEECCC-C---HHHHHHHHHcCCCEEEEeh
Confidence 56777888999999998652 33445555554433 2344444 34 2 2688888887 89999997
Q ss_pred Ccc
Q psy6272 311 IQL 313 (547)
Q Consensus 311 gDL 313 (547)
+=+
T Consensus 180 ~i~ 182 (196)
T cd00564 180 AIT 182 (196)
T ss_pred Hhh
Confidence 633
No 307
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=57.09 E-value=19 Score=34.65 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHH--HhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLG--MEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a--v~nldeIl~~-~DgImIar 310 (547)
.+.+..+++.|+|+|.+=.- ++++++++.+.+.+.+.+++|.+ --| .+|+.++.+. +|+|.+|.
T Consensus 90 ~ee~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~v~ie~----SGGI~~~ni~~ya~~gvD~isvg~ 156 (169)
T PF01729_consen 90 LEEAEEALEAGADIIMLDNM-SPEDLKEAVEELRELNPRVKIEA----SGGITLENIAEYAKTGVDVISVGS 156 (169)
T ss_dssp HHHHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHTTTSEEEE----ESSSSTTTHHHHHHTT-SEEEECH
T ss_pred HHHHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcCCcEEEEE----ECCCCHHHHHHHHhcCCCEEEcCh
Confidence 45678899999999999876 77999999998887777755544 333 4688888888 49998873
No 308
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=57.09 E-value=18 Score=30.98 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=32.9
Q ss_pred CCcccccCCCCEEEEeceeEEEEEEEeCCeEEEEEEeCcEeC
Q psy6272 179 MELPKRVIPDDIVYIDRNIKLKVVEKENNDVHCTVIRGGKLM 220 (547)
Q Consensus 179 ~~~~~~v~~Gd~I~idD~I~l~V~~v~~~~v~~~V~~gG~L~ 220 (547)
.++.+.+++||.|..-.=|..+|.+++++.+..++..|..++
T Consensus 32 ~~m~~~L~~Gd~VvT~gGi~G~V~~i~d~~v~vei~~g~~i~ 73 (84)
T TIGR00739 32 KKLIESLKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEIT 73 (84)
T ss_pred HHHHHhCCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEE
Confidence 356778899999988886777888999998888776665554
No 309
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=56.91 E-value=57 Score=35.41 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=76.5
Q ss_pred CeEEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEc---ccCChhhHHHHHHHHHhcCCCceE
Q psy6272 207 NDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMS---SVTGANSIREMRGMLEDHVDRVLI 283 (547)
Q Consensus 207 ~~v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~s---fV~sa~di~~~r~~l~~~~~~i~I 283 (547)
+.++.++-.|.+ ...|=.||+..++ .++..+ +.+..|.|.+.-| -+.|.+|+.++.+.|.+.+....|
T Consensus 136 ~~iEIKigQGAK--pG~GG~Lp~~KV~------~~ia~~-R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pV 206 (368)
T PF01645_consen 136 DMIEIKIGQGAK--PGEGGHLPGEKVT------EEIARI-RGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPV 206 (368)
T ss_dssp SEEEEE---TTS--TTT--EE-GGG--------HHHHHH-HTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEE
T ss_pred CeEEEEEecCcc--ccCcceechhhch------HHHHHH-hCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcE
Confidence 455666666654 3446667766543 122222 4456788877654 367888888888888888878889
Q ss_pred EEEecCHHHHhhHHHHHhh--cCEEEEcCCcccc---------cCChHHHHHHHHHHHHHHHHcC----CcEEEEcCCCC
Q psy6272 284 LAKIETLLGMEYMDEIIME--SDGVVLNRIQLAV---------ATSVEVTFLAQKMIAARCNKQG----KPFLVVGDILP 348 (547)
Q Consensus 284 iakIEt~~av~nldeIl~~--~DgImIargDLg~---------e~~~e~v~~~qk~ii~~c~~~g----KPvi~aTq~Le 348 (547)
-.|+=.-..++.+...+.. +|.|.|.=++=|. +.|++-. .+..++.+...+.| +.++++..+.
T Consensus 207 gvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~-~~l~~a~~~L~~~glr~~V~Li~sGgl~- 284 (368)
T PF01645_consen 207 GVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTE-YALARAHQALVKNGLRDRVSLIASGGLR- 284 (368)
T ss_dssp EEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HH-HHHHHHHHHHHCTT-CCCSEEEEESS---
T ss_pred EEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHH-HHHHHHHHHHHHcCCCCceEEEEeCCcc-
Confidence 9998766655555443222 5999998665332 3333321 22222333444333 3455555432
Q ss_pred CCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 349 DHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 349 ~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
-- .|++.++..|||++-+.
T Consensus 285 -----t~--------~dv~kalaLGAD~v~ig 303 (368)
T PF01645_consen 285 -----TG--------DDVAKALALGADAVYIG 303 (368)
T ss_dssp -----SH--------HHHHHHHHCT-SEEE-S
T ss_pred -----CH--------HHHHHHHhcCCCeeEec
Confidence 24 89999999999999998
No 310
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=56.82 E-value=89 Score=33.33 Aligned_cols=130 Identities=9% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCCChhhHHHH--------HHHHHcCCcEEEEcc-------------cCCh----------------hhHHHHHHHHHh-
Q psy6272 235 PVIADRDKHVV--------DLIVREAVDIIIMSS-------------VTGA----------------NSIREMRGMLED- 276 (547)
Q Consensus 235 p~lt~~D~~di--------~~~~~~g~d~I~~sf-------------V~sa----------------~di~~~r~~l~~- 276 (547)
..||..|++.| +.|.+.|+|+|-+.+ .+.. |=++.+|+.++.
T Consensus 132 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~ 211 (353)
T cd04735 132 RELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKH 211 (353)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccc
Confidence 45788888776 477889999996632 3332 122233333321
Q ss_pred cCCCceEEEEecCH----------HHHhhHHHHHhh-cCEEEEcCCcccccC---ChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 277 HVDRVLILAKIETL----------LGMEYMDEIIME-SDGVVLNRIQLAVAT---SVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 277 ~~~~i~IiakIEt~----------~av~nldeIl~~-~DgImIargDLg~e~---~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
...+..|-.+|--. +.++-+..+-+. .|.|=|..|...... +..... ..+.+ +.+...++||+.
T Consensus 212 ~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~-~~~~i-k~~~~~~iPVi~ 289 (353)
T cd04735 212 ADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQT-IMELV-KERIAGRLPLIA 289 (353)
T ss_pred cCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHH-HHHHH-HHHhCCCCCEEE
Confidence 01456677776532 222222222222 588888766543211 111111 11212 222223789998
Q ss_pred EcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 343 VGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 343 aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
...+. +| .++..++..|+|+|++.
T Consensus 290 ~Ggi~-t~-------------e~ae~~l~~gaD~V~~g 313 (353)
T cd04735 290 VGSIN-TP-------------DDALEALETGADLVAIG 313 (353)
T ss_pred ECCCC-CH-------------HHHHHHHHcCCChHHHh
Confidence 76643 12 45556787899999997
No 311
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=56.72 E-value=28 Score=29.56 Aligned_cols=43 Identities=26% Similarity=0.358 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHHhcCCCCCEEEE
Q psy6272 424 HSIVIACVNAALKCQAVAIIVITCS---------GYSAKLVSKYRPQCPILAV 467 (547)
Q Consensus 424 ~~ia~aav~~a~~~~a~aIvv~T~s---------G~tA~~isk~RP~~pIiav 467 (547)
...+.+.++.+.+.++++||+-++. |.++..+.+.-| ||++.|
T Consensus 88 ~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 88 GDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred eccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 3577788888999999999998887 788888888665 999876
No 312
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=56.70 E-value=1.1e+02 Score=31.00 Aligned_cols=113 Identities=18% Similarity=0.242 Sum_probs=66.3
Q ss_pred CCceeeeC-CCCcCC-CCCChhhHH-HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecC--HHH---
Q psy6272 221 DNQLVTVP-RVTFNL-PVIADRDKH-VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIET--LLG--- 292 (547)
Q Consensus 221 s~Kginlp-~~~~~l-p~lt~~D~~-di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt--~~a--- 292 (547)
+.|.+-+| +-.+-. |.-+..|.+ .+..+.++|+|.|+++. --++..+.. .+.++.++..+++ +.+
T Consensus 15 ~g~~~~~aiDh~~l~gp~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~ 87 (258)
T TIGR01949 15 SGRTVIVPMDHGVSNGPIKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGHRG---YGKDVGLIIHLSASTSLSPDP 87 (258)
T ss_pred CCCEEEEECCCccccCCCCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhcccc---cCCCCcEEEEEcCCCCCCCCC
Confidence 44555555 112222 555667755 46789999999999973 233333222 2346778888843 221
Q ss_pred -----HhhHHHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 293 -----MEYMDEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 293 -----v~nldeIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
+..+++.++. +|+|-+--. .+-+ +..+....-+++.+.|+++|.|+++
T Consensus 88 ~~~~~~~~v~~al~~Ga~~v~~~~~-~g~~-~~~~~~~~~~~i~~~~~~~g~~liv 141 (258)
T TIGR01949 88 NDKRIVTTVEDAIRMGADAVSIHVN-VGSD-TEWEQIRDLGMIAEICDDWGVPLLA 141 (258)
T ss_pred CcceeeeeHHHHHHCCCCEEEEEEe-cCCc-hHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 2336666665 575554322 1111 2233445667799999999999987
No 313
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=56.50 E-value=55 Score=35.22 Aligned_cols=87 Identities=15% Similarity=0.143 Sum_probs=55.0
Q ss_pred HHhhHHHHHhh-cCEEEEcCCcccccCChH--HHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHH
Q psy6272 292 GMEYMDEIIME-SDGVVLNRIQLAVATSVE--VTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNS 368 (547)
Q Consensus 292 av~nldeIl~~-~DgImIargDLg~e~~~e--~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~n 368 (547)
.++.+...++. +|.|.+|=-+++.--... .... -+++++.|+++||-+.++...+-.+..-|- -...+..
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~------~~~~l~~ 87 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTLLHNDELET------LERYLDR 87 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEeccccccchhhH------HHHHHHH
Confidence 34445555555 799999955666544441 1222 345889999999998888776532222220 0145567
Q ss_pred HHHhCccEEeeCCcchHH
Q psy6272 369 IVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 369 av~~g~D~vmLsk~Eta~ 386 (547)
.+..|+|++.++ ..-++
T Consensus 88 l~e~GvDaviv~-Dpg~i 104 (347)
T COG0826 88 LVELGVDAVIVA-DPGLI 104 (347)
T ss_pred HHHcCCCEEEEc-CHHHH
Confidence 788899999998 55443
No 314
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=56.29 E-value=47 Score=34.51 Aligned_cols=67 Identities=13% Similarity=0.209 Sum_probs=47.6
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcC
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIar 310 (547)
..+....|++.|+|+|.+-.. +.++++++.+++.....++.+.|- ----.+|+.++++. +|+|.+|.
T Consensus 191 tleea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieAs--GgIt~~ni~~ya~~GvD~IsvG~ 258 (273)
T PRK05848 191 SLEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEAS--GNITLENINAYAKSGVDAISSGS 258 (273)
T ss_pred CHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEE--CCCCHHHHHHHHHcCCCEEEeCh
Confidence 477788999999999999775 778888888776543445555442 11124577777777 79999874
No 315
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=56.25 E-value=45 Score=33.79 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCcEEEEcccCCh---hhHHHHHHHHHhcCCCceEEEE--ecCHHHHhhHHHHHhh-cCEEEEcCCcccc
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGA---NSIREMRGMLEDHVDRVLILAK--IETLLGMEYMDEIIME-SDGVVLNRIQLAV 315 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa---~di~~~r~~l~~~~~~i~Iiak--IEt~~av~nldeIl~~-~DgImIargDLg~ 315 (547)
.+..+.+.+.|+|+|.+.--.+. .+.+.+++.-+.. ..+.||+- |.|.+ ...|.+.. +||||||||=|.-
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~-~~ipIIgNGgI~s~e---da~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEF-NDKIIIGNNSIDDIE---SAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhc-CCCcEEEECCcCCHH---HHHHHHHhCCCeEEEcHhhccC
Confidence 34446677899999988532222 3556665544322 23778873 44433 33344444 8999999987765
Q ss_pred cCC
Q psy6272 316 ATS 318 (547)
Q Consensus 316 e~~ 318 (547)
.+.
T Consensus 227 ~~~ 229 (231)
T TIGR00736 227 NVE 229 (231)
T ss_pred CcC
Confidence 443
No 316
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=56.18 E-value=1.3e+02 Score=31.25 Aligned_cols=98 Identities=7% Similarity=0.088 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCcEEEEccc-------CChhhHHHHHHHHHhcCCCceEEEEecC---HHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMSSV-------TGANSIREMRGMLEDHVDRVLILAKIET---LLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV-------~sa~di~~~r~~l~~~~~~i~IiakIEt---~~av~nldeIl~~-~DgImIar 310 (547)
.+.+++.++.|+++|++.=- ...|-.+-++...+....++.|++.+-. .++++......+. +|++|+.+
T Consensus 24 ~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~Gad~v~v~p 103 (294)
T TIGR02313 24 RELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAGADAAMVIV 103 (294)
T ss_pred HHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcCCCEEEEcC
Confidence 45578999999999986532 2223344444455555667899988753 3455555544433 69999987
Q ss_pred CcccccCChHHHHHHHHHHHHHHHHc-CCcEEEE
Q psy6272 311 IQLAVATSVEVTFLAQKMIAARCNKQ-GKPFLVV 343 (547)
Q Consensus 311 gDLg~e~~~e~v~~~qk~ii~~c~~~-gKPvi~a 343 (547)
--.-- .+.+.+...-+.| |.+. +.|+++-
T Consensus 104 P~y~~-~~~~~l~~~f~~i---a~a~~~lpv~iY 133 (294)
T TIGR02313 104 PYYNK-PNQEALYDHFAEV---ADAVPDFPIIIY 133 (294)
T ss_pred ccCCC-CCHHHHHHHHHHH---HHhccCCCEEEE
Confidence 54321 2334454444444 5556 7898874
No 317
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=56.15 E-value=48 Score=32.99 Aligned_cols=67 Identities=25% Similarity=0.213 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-++.+.+.|.+.+.++.|-+.-+.. .-+|+++++.-.|.|+.+-.+. .....+-+.|+++++|++.+
T Consensus 76 Ka~~~~~~l~~~np~~~i~~~~~~i-~~~~~~~~~~~~DvVi~~~d~~----------~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 76 KAEAAAERLRAINPDVEIEAYNERL-DAENAEELIAGYDLVLDCTDNF----------ATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHHHHhCCCCEEEEeccee-CHHHHHHHHhCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 4566677777777777665543333 2468888888899999884443 24556888999999999986
No 318
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=55.90 E-value=1.8e+02 Score=29.36 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=32.1
Q ss_pred HHHHHHHHHcCCcEEEEcccC----------ChhhHHHHHHHHHhcCCCce
Q psy6272 242 KHVVDLIVREAVDIIIMSSVT----------GANSIREMRGMLEDHVDRVL 282 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~----------sa~di~~~r~~l~~~~~~i~ 282 (547)
.+.++.+.++|+|+|-++.-. +.+++.++++.+++.|-.+.
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCcee
Confidence 456888999999999997432 67789999999988765544
No 319
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=55.86 E-value=2e+02 Score=29.54 Aligned_cols=99 Identities=9% Similarity=0.019 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHcCCcEEEEcccC-ChhhHHHHHHHHHhcCCCceEEEEecCHHH--HhhHHHHHhh-----cCEEEEcCC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVT-GANSIREMRGMLEDHVDRVLILAKIETLLG--MEYMDEIIME-----SDGVVLNRI 311 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~-sa~di~~~r~~l~~~~~~i~IiakIEt~~a--v~nldeIl~~-----~DgImIarg 311 (547)
.+.++++.+.+.|+|+|-+++-. ..+.+....++..+.| ..+...+|..-. .+.+.++++. +|.|.++
T Consensus 83 ~~~~~l~~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G--~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~-- 158 (266)
T cd07944 83 DDIDLLEPASGSVVDMIRVAFHKHEFDEALPLIKAIKEKG--YEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV-- 158 (266)
T ss_pred CCHHHHHHHhcCCcCEEEEecccccHHHHHHHHHHHHHCC--CeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe--
Confidence 46778999999999998887632 2333444444444444 345566555332 2233333332 3666665
Q ss_pred cccccCChHHHHHHHHHHHHHHHHcC--CcEEEEcC
Q psy6272 312 QLAVATSVEVTFLAQKMIAARCNKQG--KPFLVVGD 345 (547)
Q Consensus 312 DLg~e~~~e~v~~~qk~ii~~c~~~g--KPvi~aTq 345 (547)
|=.--+.++++...-+.+. +..+ .|+.+.++
T Consensus 159 DT~G~~~P~~v~~lv~~l~---~~~~~~~~i~~H~H 191 (266)
T cd07944 159 DSFGSMYPEDIKRIISLLR---SNLDKDIKLGFHAH 191 (266)
T ss_pred cCCCCCCHHHHHHHHHHHH---HhcCCCceEEEEeC
Confidence 4333333445544444332 2334 78888766
No 320
>PRK08246 threonine dehydratase; Provisional
Probab=55.78 E-value=1.4e+02 Score=31.13 Aligned_cols=118 Identities=15% Similarity=0.193 Sum_probs=70.6
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+..|.|+.+.. |....- .-+...-..|++.+... + +..++++...++.++. ..++..+
T Consensus 83 ~A~~a~~~G~~~~iv~-----p~~~~~--------~k~~~~~~~GA~V~~~~-~-~~~~~~~~a~~~~~~~-g~~~~~~- 145 (310)
T PRK08246 83 VAYAAAALGVPATVFV-----PETAPP--------AKVARLRALGAEVVVVG-A-EYADALEAAQAFAAET-GALLCHA- 145 (310)
T ss_pred HHHHHHHcCCCEEEEE-----CCCCcH--------HHHHHHHHCCCEEEEeC-C-CHHHHHHHHHHHHHhc-CCEeCCC-
Confidence 5678999999998863 333222 23445567899988776 4 3445665555554432 1111111
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHh-cCCCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVSK-YRPQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~isk-~RP~~pIiavt~~~ 471 (547)
|++ + ...+.-...+.|+.+++ ..+.||+.+-+|.++.-+++ +++...|++|.+..
T Consensus 146 ~~n-------~-~~i~g~~t~~~Ei~eq~~~~D~iv~~vG~GG~~~Gi~~~~~~~~~vi~ve~~~ 202 (310)
T PRK08246 146 YDQ-------P-EVLAGAGTLGLEIEEQAPGVDTVLVAVGGGGLIAGIAAWFEGRARVVAVEPEG 202 (310)
T ss_pred CCC-------h-hhhcchHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHhcCCCEEEEEeeCC
Confidence 110 0 01111233455555555 58999999999988887765 56677899998854
No 321
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=55.78 E-value=2.1e+02 Score=28.06 Aligned_cols=119 Identities=9% Similarity=0.172 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHcCCcEEEEccc--CChhhHHHHHHHHHhcCCCceEEEE-------ecCHH--HHhhHHHHHhh-----c
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSV--TGANSIREMRGMLEDHVDRVLILAK-------IETLL--GMEYMDEIIME-----S 303 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV--~sa~di~~~r~~l~~~~~~i~Iiak-------IEt~~--av~nldeIl~~-----~ 303 (547)
.+.+|++.+++.|+|.|++..- .+++.++++.+ ....++.+-.. +...+ .-.++.|+++. +
T Consensus 84 ~~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~---~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~ 160 (233)
T PRK00748 84 RSLETVEALLDAGVSRVIIGTAAVKNPELVKEACK---KFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGV 160 (233)
T ss_pred CCHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHH---HhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCC
Confidence 3677888999999999887642 33334444433 32222221111 11110 01122333332 5
Q ss_pred CEEEEc-CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhC-ccEEeeC
Q psy6272 304 DGVVLN-RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDG-ADVVVLT 380 (547)
Q Consensus 304 DgImIa-rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g-~D~vmLs 380 (547)
|.|++- +.-=+...|+ ++.. +-+.++..+.|++.+..+. .. .|+......| +|++|+.
T Consensus 161 ~~ii~~~~~~~g~~~G~-d~~~----i~~l~~~~~ipvia~GGi~------~~--------~di~~~~~~g~~~gv~vg 220 (233)
T PRK00748 161 KAIIYTDISRDGTLSGP-NVEA----TRELAAAVPIPVIASGGVS------SL--------DDIKALKGLGAVEGVIVG 220 (233)
T ss_pred CEEEEeeecCcCCcCCC-CHHH----HHHHHHhCCCCEEEeCCCC------CH--------HHHHHHHHcCCccEEEEE
Confidence 755554 3222222332 2222 1223445679999988743 23 7777777778 9999997
No 322
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=55.70 E-value=2.4e+02 Score=29.63 Aligned_cols=128 Identities=9% Similarity=0.115 Sum_probs=80.1
Q ss_pred HHHHHHHHHcCCcEEEE-----ccc---------CChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEE
Q psy6272 242 KHVVDLIVREAVDIIIM-----SSV---------TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGV 306 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~-----sfV---------~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgI 306 (547)
.+.-+.|-+.|+-.|++ |-+ +++++|+++++.. +++||+++---- +...+++.++ +|.|
T Consensus 18 ~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V-----~iPVIGi~K~~~-~~Ea~~L~eaGvDiI 91 (283)
T cd04727 18 AEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAV-----SIPVMAKVRIGH-FVEAQILEALGVDMI 91 (283)
T ss_pred HHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhC-----CCCeEEeeehhH-HHHHHHHHHcCCCEE
Confidence 34456677888888887 433 4556666666644 688888764221 7777777766 6877
Q ss_pred EEcCCcccccCChHHHHHHHHHHHHHHHH-cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcc--
Q psy6272 307 VLNRIQLAVATSVEVTFLAQKMIAARCNK-QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSE-- 383 (547)
Q Consensus 307 mIargDLg~e~~~e~v~~~qk~ii~~c~~-~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~E-- 383 (547)
| +.+..-+ + ..++...+. ++.|++. .+..+ .+.-+++..|+|+|=-+ ++
T Consensus 92 -----D-aT~r~rP-~----~~~~~~iK~~~~~l~MA-----------D~stl-----eEal~a~~~Gad~I~TT-l~gy 143 (283)
T cd04727 92 -----D-ESEVLTP-A----DEEHHIDKHKFKVPFVC-----------GARNL-----GEALRRISEGAAMIRTK-GEAG 143 (283)
T ss_pred -----e-ccCCCCc-H----HHHHHHHHHHcCCcEEc-----------cCCCH-----HHHHHHHHCCCCEEEec-CCCC
Confidence 4 3222211 1 223333333 4788774 22111 77789999999998655 43
Q ss_pred h--HHHHHHHHHHHHHHhhhhh
Q psy6272 384 Q--AHHRVDILKEILKKTESVL 403 (547)
Q Consensus 384 t--a~eaV~~m~~I~~~aE~~~ 403 (547)
| ..|+|+-+++|-.++....
T Consensus 144 T~~~~~~~~~~~~i~~~i~~~~ 165 (283)
T cd04727 144 TGNVVEAVRHMRAVNGEIRKLQ 165 (283)
T ss_pred CCcHHHHHHHHHHHHHHHHHHh
Confidence 2 2299999999988887543
No 323
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=55.43 E-value=51 Score=33.36 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
-++.+++.|.+.|.++.|-+--+.... +|+++++..+|.|+-+-.++ .....+-+.|+++|+|++.+.
T Consensus 79 Ka~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~~~~~~DlVvd~~D~~----------~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 79 KVESAKDALTQINPHIAINPINAKLDD-AELAALIAEHDIVVDCTDNV----------EVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCCH-HHHHHHhhcCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEEE
Confidence 355566677777777776664433332 57888888889888774332 345667789999999999863
No 324
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=55.40 E-value=78 Score=31.60 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 324 LAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 324 ~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.+....++.++++|++|++.|- + .. .+...++..|+|+++-.
T Consensus 218 ~~~~~~i~~~~~~G~~v~vwtv---n----~~--------~~~~~~~~~Gvdgi~TD 259 (263)
T cd08567 218 LVTKELVDEAHALGLKVVPWTV---N----DP--------EDMARLIDLGVDGIITD 259 (263)
T ss_pred hcCHHHHHHHHHCCCEEEEecC---C----CH--------HHHHHHHHcCCCEEEcC
Confidence 4566799999999999998873 1 12 45567888899999865
No 325
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=54.93 E-value=66 Score=27.92 Aligned_cols=63 Identities=21% Similarity=0.159 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
=+..+++++++.|-+..+.+ -++.++++.+...|.|+++ +.+...++++-+.+...|+||..-
T Consensus 19 l~~k~~~~~~~~gi~~~v~a-----~~~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 19 LVNKMNKAAEEYGVPVKIAA-----GSYGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred HHHHHHHHHHHCCCcEEEEE-----ecHHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCEEEe
Confidence 45788888888776655544 3555676767778999988 356778888989999999999873
No 326
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=54.88 E-value=41 Score=42.53 Aligned_cols=151 Identities=13% Similarity=0.060 Sum_probs=93.2
Q ss_pred CeEEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEc---ccCChhhHHHHHHHHHhcCCCceE
Q psy6272 207 NDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMS---SVTGANSIREMRGMLEDHVDRVLI 283 (547)
Q Consensus 207 ~~v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~s---fV~sa~di~~~r~~l~~~~~~i~I 283 (547)
+.+..++-.|.+ +..|=.|||.++. .++.. .+.+.-|.|.|.=| -+.|.+|+.++..-|.+.+....|
T Consensus 929 ~~ieIKi~QGAK--PG~GG~Lpg~KV~------~~IA~-~R~~~~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I 999 (1485)
T PRK11750 929 EVLQIKVAQGAK--PGEGGQLPGDKVN------PLIAR-LRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALV 999 (1485)
T ss_pred CEEEEEecCCCC--CCCCCcCccccCC------HHHHH-HcCCCCCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcE
Confidence 334444444443 2334456665553 11211 13344577765433 366888888888888888888889
Q ss_pred EEEecCHHHHhhHHH-HHhh-cCEEEEcCCcccc---------cC--ChH-HHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q psy6272 284 LAKIETLLGMEYMDE-IIME-SDGVVLNRIQLAV---------AT--SVE-VTFLAQKMIAARCNKQGKPFLVVGDILPD 349 (547)
Q Consensus 284 iakIEt~~av~nlde-Il~~-~DgImIargDLg~---------e~--~~e-~v~~~qk~ii~~c~~~gKPvi~aTq~Le~ 349 (547)
-.|+=...++..+.. ++++ +|.|.|.=+|=|. .. |++ -+..+++.+...=-+..+.+++..++.
T Consensus 1000 ~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l~a~Ggl~-- 1077 (1485)
T PRK11750 1000 SVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGGLK-- 1077 (1485)
T ss_pred EEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEEEEcCCcC--
Confidence 999877777766663 3333 7999999666432 12 222 366676655443334445666666643
Q ss_pred CCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 350 HNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 350 PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
-- .|++-|++.|||.+-+.
T Consensus 1078 ----t~--------~Dv~kA~aLGAd~~~~g 1096 (1485)
T PRK11750 1078 ----TG--------LDVIKAAILGAESFGFG 1096 (1485)
T ss_pred ----CH--------HHHHHHHHcCCcccccc
Confidence 24 89999999999999887
No 327
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=54.86 E-value=30 Score=35.38 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=35.0
Q ss_pred HHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH----HHHHHHHHHHHHhhh
Q psy6272 333 CNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH----HRVDILKEILKKTES 401 (547)
Q Consensus 333 c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~----eaV~~m~~I~~~aE~ 401 (547)
+++...|||+-.. ++.-+|++.|...|+|+|+++ ||+ +=|+|-.-.-...|+
T Consensus 171 ~~~~~vPvIvDAG--------------iG~pSdaa~AMElG~daVLvN---TAiA~A~dPv~MA~Af~~AV~A 226 (247)
T PF05690_consen 171 IERADVPVIVDAG--------------IGTPSDAAQAMELGADAVLVN---TAIAKAKDPVAMARAFKLAVEA 226 (247)
T ss_dssp HHHGSSSBEEES-----------------SHHHHHHHHHTT-SEEEES---HHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHhcCCcEEEeCC--------------CCCHHHHHHHHHcCCceeehh---hHHhccCCHHHHHHHHHHHHHH
Confidence 3455999998322 244499999999999999999 444 556665555555555
No 328
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=54.72 E-value=1.3e+02 Score=32.65 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 337 GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 337 gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
..||+....+= .- .|++.|+..|||++++. .....
T Consensus 279 ~~~vi~dGGIr------~G--------~Dv~KALALGA~aV~iG-r~~l~ 313 (367)
T PLN02493 279 RIPVFLDGGVR------RG--------TDVFKALALGASGIFIG-RPVVF 313 (367)
T ss_pred CCeEEEeCCcC------cH--------HHHHHHHHcCCCEEEEc-HHHHH
Confidence 48899876642 34 89999999999999998 65553
No 329
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=54.68 E-value=1.3e+02 Score=31.13 Aligned_cols=93 Identities=9% Similarity=0.001 Sum_probs=61.1
Q ss_pred HHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh--cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCC
Q psy6272 270 MRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDIL 347 (547)
Q Consensus 270 ~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~L 347 (547)
+++.|.+...-...+.++-++... ||+.. .|.|+|. +|-+.-.+..++ .++.+|+..|.+.++
T Consensus 9 lk~~L~~G~~~~G~~~~~~sp~~~----E~~a~~GfD~v~iD-----~EHg~~~~~~l~-~~i~a~~~~g~~~lV----- 73 (267)
T PRK10128 9 FKEGLRKGEVQIGLWLSSTTSYMA----EIAATSGYDWLLID-----GEHAPNTIQDLY-HQLQAIAPYASQPVI----- 73 (267)
T ss_pred HHHHHHcCCceEEEEecCCCcHHH----HHHHHcCCCEEEEc-----cccCCCCHHHHH-HHHHHHHhcCCCeEE-----
Confidence 566665422234466666666544 45555 4999987 454544444444 377888899999887
Q ss_pred CCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 348 PDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 348 e~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
++-..+- ..+..+...|+++||+..-+|+-
T Consensus 74 -Rvp~~~~--------~~i~r~LD~GA~GIivP~V~sae 103 (267)
T PRK10128 74 -RPVEGSK--------PLIKQVLDIGAQTLLIPMVDTAE 103 (267)
T ss_pred -ECCCCCH--------HHHHHHhCCCCCeeEecCcCCHH
Confidence 4433344 77889999999999998555554
No 330
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=54.58 E-value=75 Score=28.42 Aligned_cols=65 Identities=25% Similarity=0.222 Sum_probs=50.5
Q ss_pred ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 263 GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 263 sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
|.==+...+++.+.+|.++.|.|.=|+ .+++-+...|.+++|| .+...-+++-+.+..+|+||-+
T Consensus 14 TSlLV~Km~~aA~~kg~~~~I~A~s~~-----e~~~~~~~~DvvLlGP----------Qv~y~~~~~~~~~~~~giPV~v 78 (102)
T COG1440 14 TSLLVTKMKKAAESKGKDVTIEAYSET-----ELSEYIDNADVVLLGP----------QVRYMLKQLKEAAEEKGIPVEV 78 (102)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEechh-----HHHHhhhcCCEEEECh----------HHHHHHHHHHHHhcccCCCeEE
Confidence 333467788888888999999887443 4555566899999993 5666777889999999999876
No 331
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.16 E-value=94 Score=31.35 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=30.1
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 326 QKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 326 qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
-..+++.|+++|.|++=..- -- +++..|...|+|.+=|-
T Consensus 101 ~~~v~~~~~~~~i~~iPG~~--------Tp--------sEi~~A~~~Ga~~vKlF 139 (222)
T PRK07114 101 NPDIAKVCNRRKVPYSPGCG--------SL--------SEIGYAEELGCEIVKLF 139 (222)
T ss_pred CHHHHHHHHHcCCCEeCCCC--------CH--------HHHHHHHHCCCCEEEEC
Confidence 35689999999999884311 12 67788999999998876
No 332
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=54.07 E-value=2.3e+02 Score=30.31 Aligned_cols=126 Identities=9% Similarity=0.156 Sum_probs=77.1
Q ss_pred CCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcc
Q psy6272 234 LPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQL 313 (547)
Q Consensus 234 lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDL 313 (547)
+|.++-++. ++.|.+.|. .|..-.|.+.+.++.+.+..++.+ ..+|.++= ++.+
T Consensus 7 m~lv~~k~l--L~~A~~~~y-AV~AfN~~n~e~~~avi~AAee~~--sPvIlq~s---------------------~~~~ 60 (321)
T PRK07084 7 LGLVNTREM--FAKAVKGGY-AIPAYNFNNMEQLQAIIQACVETK--SPVILQVS---------------------KGAR 60 (321)
T ss_pred ccccCHHHH--HHHHHHCCc-eEEEEEeCCHHHHHHHHHHHHHhC--CCEEEEec---------------------hhHH
Confidence 455565553 677777766 567777888888888888777653 44554541 1111
Q ss_pred cccCChHHHHHHHHHHHHHHHHc--CCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH--HHH
Q psy6272 314 AVATSVEVTFLAQKMIAARCNKQ--GKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH--HRV 389 (547)
Q Consensus 314 g~e~~~e~v~~~qk~ii~~c~~~--gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~--eaV 389 (547)
.. .|.+.+...-..+...++++ .+||.+.. +.. ... .++..|+..|++.||.. +-+.- |-|
T Consensus 61 ~~-~g~~~~~~~~~~~~~~a~~a~~~VPV~lHL----DHg-~~~--------e~i~~ai~~GftSVMiD-~S~lp~eeNI 125 (321)
T PRK07084 61 KY-ANATLLRYMAQGAVEYAKELGCPIPIVLHL----DHG-DSF--------ELCKDCIDSGFSSVMID-GSHLPYEENV 125 (321)
T ss_pred hh-CCchHHHHHHHHHHHHHHHcCCCCcEEEEC----CCC-CCH--------HHHHHHHHcCCCEEEee-CCCCCHHHHH
Confidence 11 23333444555566778887 68999843 222 134 77889999999999997 54433 555
Q ss_pred HHHHHHHHHhh
Q psy6272 390 DILKEILKKTE 400 (547)
Q Consensus 390 ~~m~~I~~~aE 400 (547)
+.-+++++.+.
T Consensus 126 ~~T~evv~~Ah 136 (321)
T PRK07084 126 ALTKKVVEYAH 136 (321)
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 333
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=54.02 E-value=53 Score=30.76 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=65.7
Q ss_pred HHHHHHcCCcEEEEcccCChh------hHHHHHHHHHhcCCCceEEEE-e-----------cC---HHHHhhHHHHHhh-
Q psy6272 245 VDLIVREAVDIIIMSSVTGAN------SIREMRGMLEDHVDRVLILAK-I-----------ET---LLGMEYMDEIIME- 302 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~------di~~~r~~l~~~~~~i~Iiak-I-----------Et---~~av~nldeIl~~- 302 (547)
++++.++|+++|-+++...-. +++++++.+.+.|-.+.-+.- . ++ .++++.+.+.+..
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a 80 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLA 80 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHH
Confidence 467889999999988776543 478899999887654332221 1 11 3346777777766
Q ss_pred ----cCEEEEcCC--cccccCC----hHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 303 ----SDGVVLNRI--QLAVATS----VEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 303 ----~DgImIarg--DLg~e~~----~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
++.+.+..| ...-... .+.+...-+++...|.++|.-+.+=
T Consensus 81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE 131 (213)
T PF01261_consen 81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALE 131 (213)
T ss_dssp HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEe
Confidence 378888877 3333333 3466667788999999999776663
No 334
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=53.95 E-value=1.3e+02 Score=29.95 Aligned_cols=156 Identities=14% Similarity=0.158 Sum_probs=91.0
Q ss_pred CCCChh-h-HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCH-----HH-----HhhHHHHHhh
Q psy6272 235 PVIADR-D-KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETL-----LG-----MEYMDEIIME 302 (547)
Q Consensus 235 p~lt~~-D-~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~-----~a-----v~nldeIl~~ 302 (547)
|.++.. | .+.++.+++.|++.|+++. .-+...++.+...+..+..+.....- .. +...++.++.
T Consensus 13 ~~~~~~~~~~~~~~~a~~~~~~av~v~p----~~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 13 GPMTGEEDIKKLCREAIEYGFDAVCVTP----GYVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSSEEEEEG----GGHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred CCCCchhhHHHHHHHHHHhCCCEEEECH----HHHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 344444 4 4557889999999999874 45666776665444467777766532 22 4455566655
Q ss_pred -cCEEEE--cCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccC-ccchhhHH-HHHHhCccEE
Q psy6272 303 -SDGVVL--NRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVS-IGDMNDVN-SIVQDGADVV 377 (547)
Q Consensus 303 -~DgImI--argDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~-~~~~~Dv~-nav~~g~D~v 377 (547)
+|+|-+ ..|-++-+- .+.+..--+++.+.|+.+|.|+|+- . .|+..++.+-. ...+...+ -+...|+|.+
T Consensus 89 GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIlE-~---~l~~~~~~~~~~~~~I~~a~ria~e~GaD~v 163 (236)
T PF01791_consen 89 GADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVILE-P---YLRGEEVADEKKPDLIARAARIAAELGADFV 163 (236)
T ss_dssp T-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEEE-E---CECHHHBSSTTHHHHHHHHHHHHHHTT-SEE
T ss_pred CCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEEE-E---ecCchhhcccccHHHHHHHHHHHHHhCCCEE
Confidence 675433 322222211 3566666678999999999999986 3 23333310000 00002222 3567899999
Q ss_pred eeCCcc----hHHHHHHHHHHHHHHhh
Q psy6272 378 VLTQSE----QAHHRVDILKEILKKTE 400 (547)
Q Consensus 378 mLsk~E----ta~eaV~~m~~I~~~aE 400 (547)
=.+ .. +..+.++.|.+++....
T Consensus 164 Kt~-tg~~~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 164 KTS-TGKPVGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp EEE--SSSSCSHHHHHHHHHHHHHTHS
T ss_pred Eec-CCccccccHHHHHHHHHHHHhcC
Confidence 887 33 33378888888877554
No 335
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=53.72 E-value=2.7e+02 Score=28.60 Aligned_cols=131 Identities=10% Similarity=-0.005 Sum_probs=76.1
Q ss_pred CCChhhHHHHHH-HHHcCCcEEEEcccCChhh----------HHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh--
Q psy6272 236 VIADRDKHVVDL-IVREAVDIIIMSSVTGANS----------IREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-- 302 (547)
Q Consensus 236 ~lt~~D~~di~~-~~~~g~d~I~~sfV~sa~d----------i~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-- 302 (547)
.+|..++..|.. .-+.|+|.|=+.|..+.++ .+.++.+......+.++.+..-.... ++++|...
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~l~~a~~ 93 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGND--DIDLLEPASG 93 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCC--CHHHHHHHhc
Confidence 346677776654 4458999998888765331 45555555432236777777655432 33344433
Q ss_pred --cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH-HHHHhCccEEee
Q psy6272 303 --SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN-SIVQDGADVVVL 379 (547)
Q Consensus 303 --~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~-nav~~g~D~vmL 379 (547)
.|.|-|+ ++...+..+ +.+++.++++|..|.+.-. +-+|. +..++.+++ .+...|+|.+.+
T Consensus 94 ~gv~~iri~-------~~~~~~~~~-~~~i~~ak~~G~~v~~~~~---~a~~~-----~~~~~~~~~~~~~~~g~~~i~l 157 (266)
T cd07944 94 SVVDMIRVA-------FHKHEFDEA-LPLIKAIKEKGYEVFFNLM---AISGY-----SDEELLELLELVNEIKPDVFYI 157 (266)
T ss_pred CCcCEEEEe-------cccccHHHH-HHHHHHHHHCCCeEEEEEE---eecCC-----CHHHHHHHHHHHHhCCCCEEEE
Confidence 3665554 233344444 4578899999988776422 22221 112225655 445579999999
Q ss_pred CCcchHH
Q psy6272 380 TQSEQAH 386 (547)
Q Consensus 380 sk~Eta~ 386 (547)
. +|.=
T Consensus 158 ~--DT~G 162 (266)
T cd07944 158 V--DSFG 162 (266)
T ss_pred e--cCCC
Confidence 7 5554
No 336
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=53.43 E-value=89 Score=33.68 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=92.4
Q ss_pred HHHHHHHhcCCCceEEE---EecCHHHH----hhHHHHHhh-c-CEEEEcCCcccc------------------cCCh-H
Q psy6272 269 EMRGMLEDHVDRVLILA---KIETLLGM----EYMDEIIME-S-DGVVLNRIQLAV------------------ATSV-E 320 (547)
Q Consensus 269 ~~r~~l~~~~~~i~Iia---kIEt~~av----~nldeIl~~-~-DgImIargDLg~------------------e~~~-e 320 (547)
++++.|...++++.+|+ -||++++. +.|.++... . +.++|=|+.+-= +... +
T Consensus 41 ~I~~Il~g~d~rllvIvGPCSIhd~~~a~eyA~rL~~l~~~~~d~l~ivmR~y~eKPRTt~gWKGli~DP~ldgsf~i~~ 120 (348)
T PRK12756 41 RIEKILNGEDPRLLVIIGPCSIHDTDAALDYATRLAALREQYQDRLEIVMRTYFEKPRTVVGWKGLISDPDLDGSYRVNH 120 (348)
T ss_pred HHHHHhcCCCCceEEEecCCcCCCHHHHHHHHHHHHHHHHHhhccEEEEEEeccccCCCCcccccccCCCCCCCCccHHH
Confidence 44556655566777776 57777766 333343332 2 345566654422 1111 2
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhh
Q psy6272 321 VTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTE 400 (547)
Q Consensus 321 ~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE 400 (547)
-+..+.+..++ .++.|.|+. |.+| +|.-+++ +.|+..+..-| .+.+|
T Consensus 121 GL~~~R~ll~~-i~~~GlP~a--tE~l-d~~~~qY-------~~DliSwgaIG----------------------ARt~e 167 (348)
T PRK12756 121 GLELARKLLLQ-INELGLPTA--TEFL-DMVTGQY-------IADLISWGAIG----------------------ARTTE 167 (348)
T ss_pred HHHHHHHHHHH-HHHcCCcee--ehhc-ccccHHH-------HHHHHhhhhhc----------------------ccccc
Confidence 34555554444 478999987 6888 4544444 47777665556 34444
Q ss_pred hhhhhHHHHHHhhhc--CCCCCChhhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCEE
Q psy6272 401 SVLWEKQVFEDLCAL--ACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPIL 465 (547)
Q Consensus 401 ~~~~~~~~f~~~~~~--~~~~~~~~~~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk~RP~~pIi 465 (547)
+.. |+++-..+... .+...+..-.+|..|+.+|. +....+-.+..|++|..-++=.|.|-||
T Consensus 168 sq~-hre~ASgls~PVgfKN~t~g~i~~aidAi~aa~--~~H~Fl~~~~~G~~aiv~T~GN~~~HvI 231 (348)
T PRK12756 168 SQI-HREMASALSCPVGFKNGTDGNTRIAIDAIRAAR--ASHMFLSPDKDGQMTIYQTSGNPYGHII 231 (348)
T ss_pred CHH-HHHHHhcCCCceEecCCCCCCHHHHHHHHHHHh--CCCeeEeeCCCCcEEEEEcCCCCCeEEE
Confidence 432 33333322211 12334555568888888885 4456788889998887777777777665
No 337
>TIGR00010 hydrolase, TatD family. Several genomes have multiple paralogs related to this family. However, a set of 17 proteins can be found, one each from 17 of the first 20 genomes, such that each member forms a bidirectional best hit across genomes with all other members of the set. This core set (and one other near-perfect member), but not the other paralogs, form the seed for this model. Additionally, members of the seed alignment and all trusted hits, but not all paralogs, have a conserved motif DxHxH near the amino end. The member from E. coli was recently shown to have DNase activity.
Probab=53.31 E-value=1.4e+02 Score=29.13 Aligned_cols=101 Identities=8% Similarity=0.051 Sum_probs=56.5
Q ss_pred hHHH-HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEec-------CHHHHhhHHHHHhhcCEEEEcCCc
Q psy6272 241 DKHV-VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIE-------TLLGMEYMDEIIMESDGVVLNRIQ 312 (547)
Q Consensus 241 D~~d-i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIE-------t~~av~nldeIl~~~DgImIargD 312 (547)
+.+. ++...+.|++.++.+-. +..+.+.+.+..++.. ++....-|= ..+-++.+++.+.......| |.
T Consensus 16 ~~~~~~~~~~~~Gv~~~v~~~~-~~~~~~~~~~~~~~~~-~i~~~~GihP~~~~~~~~~~~~~l~~~l~~~~~~~i--GE 91 (252)
T TIGR00010 16 DVEEVIERAKAAGVTAVVAVGT-DLEDFLRALELAEKYP-NVYAAVGVHPLDVDDDTKEDIKELERLAAHPKVVAI--GE 91 (252)
T ss_pred CHHHHHHHHHHcCCCEEEEecC-CHHHHHHHHHHHHHCC-CEEEEEEeCcchhhcCCHHHHHHHHHHccCCCEEEE--Ee
Confidence 3443 45667889999886543 3577777777776555 544333321 12223344444332223333 66
Q ss_pred ccccCCh--H-H--HHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 313 LAVATSV--E-V--TFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 313 Lg~e~~~--e-~--v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
.|++... . . =...-+..++.|++.|+||.+.|.
T Consensus 92 iGld~~~~~~~~~~q~~~~~~~~~~a~~~~~pv~iH~~ 129 (252)
T TIGR00010 92 TGLDYYKADEYKRRQEEVFRAQLQLAEELNLPVIIHAR 129 (252)
T ss_pred cccCcCCCCCCHHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 6665432 1 0 112334456778999999999875
No 338
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=53.17 E-value=1.1e+02 Score=28.51 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEee
Q psy6272 325 AQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVL 379 (547)
Q Consensus 325 ~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmL 379 (547)
...++++.|+++|+++++.|- . +. .+.-.++..|+|+++-
T Consensus 148 ~~~~~i~~~~~~g~~v~~wtv----n---~~--------~~~~~~~~~GVdgI~T 187 (189)
T cd08556 148 LTPELVRAAHAAGLKVYVWTV----N---DP--------EDARRLLALGVDGIIT 187 (189)
T ss_pred CCHHHHHHHHHcCCEEEEEcC----C---CH--------HHHHHHHHCCCCEEec
Confidence 456789999999999998874 1 23 5566788899999975
No 339
>PLN02550 threonine dehydratase
Probab=53.15 E-value=1e+02 Score=35.64 Aligned_cols=119 Identities=17% Similarity=0.123 Sum_probs=76.4
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+++|.|+.+. .|..+-. .-+...-..|++.++.. ++-.++.+...+++++ +...|.. -
T Consensus 172 vA~aA~~lGika~Iv-----mP~~tp~--------~Kv~~~r~~GAeVvl~g--~~~dea~~~A~~la~e-~g~~fi~-p 234 (591)
T PLN02550 172 VALSAQRLGCDAVIA-----MPVTTPE--------IKWQSVERLGATVVLVG--DSYDEAQAYAKQRALE-EGRTFIP-P 234 (591)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHHcCCEEEEeC--CCHHHHHHHHHHHHHh-cCCEEEC-C
Confidence 667899999999886 4443333 44455566799887774 5555777776666554 2211110 0
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCchh
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKCQ--AVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLGY 472 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~~--a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~~ 472 (547)
|++ .+....-..-+.|+..+++ .++||+..-+|.+.--++ .++|...|++|-+...
T Consensus 235 fdd--------p~viaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a 296 (591)
T PLN02550 235 FDH--------PDVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDA 296 (591)
T ss_pred CCC--------hHHHHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 110 1122223444778888775 699999999998876554 4689999999999653
No 340
>KOG2550|consensus
Probab=53.07 E-value=20 Score=39.32 Aligned_cols=45 Identities=22% Similarity=0.607 Sum_probs=41.0
Q ss_pred EecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHH
Q psy6272 59 ATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLA 104 (547)
Q Consensus 59 ~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a 104 (547)
+.+|-...+.+.+.-|.++|+|+.-|+ |.|+..+..+ ||+.||+.
T Consensus 244 AaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qie-mik~iK~~ 289 (503)
T KOG2550|consen 244 AAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLE-MIKYIKET 289 (503)
T ss_pred eccccccchhHHHHHhhhcCCcEEEEecCCCcchhHHH-HHHHHHhh
Confidence 456888888999999999999999999 9999999999 99999874
No 341
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=52.83 E-value=2.7e+02 Score=29.68 Aligned_cols=98 Identities=11% Similarity=-0.003 Sum_probs=53.5
Q ss_pred HHHHHHHHHcCCcEEEEcc-cCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-----cCEEEEcCCcccc
Q psy6272 242 KHVVDLIVREAVDIIIMSS-VTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-----SDGVVLNRIQLAV 315 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf-V~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-----~DgImIargDLg~ 315 (547)
.++++.+.++|+|.|-+.+ ...++.+.+.-++..+.|.++.+...--+....+.+.++++. +|.|-++ |=.-
T Consensus 91 ~~dl~~a~~~gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~--DT~G 168 (337)
T PRK08195 91 VDDLKMAYDAGVRVVRVATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV--DSAG 168 (337)
T ss_pred HHHHHHHHHcCCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC--CCCC
Confidence 5779999999999987764 333444444555556666554433322222233333333333 4666554 4333
Q ss_pred cCChHHHHHHHHHHHHHHHHc---CCcEEEEcC
Q psy6272 316 ATSVEVTFLAQKMIAARCNKQ---GKPFLVVGD 345 (547)
Q Consensus 316 e~~~e~v~~~qk~ii~~c~~~---gKPvi~aTq 345 (547)
.+-++++.. ++...++. ++|+.+.++
T Consensus 169 ~~~P~~v~~----~v~~l~~~l~~~i~ig~H~H 197 (337)
T PRK08195 169 ALLPEDVRD----RVRALRAALKPDTQVGFHGH 197 (337)
T ss_pred CCCHHHHHH----HHHHHHHhcCCCCeEEEEeC
Confidence 333344433 44444433 588998776
No 342
>PLN02535 glycolate oxidase
Probab=52.81 E-value=38 Score=36.71 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCC------hhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCC
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTG------ANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRI 311 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~s------a~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIarg 311 (547)
.++.+.+.+.|+|+|.+|.-.- ..-+..+.+.....+.++.||+- -|+.+-.+|+++ +|+++|||.
T Consensus 234 ~~dA~~a~~~GvD~I~vsn~GGr~~d~~~~t~~~L~ev~~av~~~ipVi~d----GGIr~g~Dv~KALalGA~aV~vGr~ 309 (364)
T PLN02535 234 REDAIKAVEVGVAGIIVSNHGARQLDYSPATISVLEEVVQAVGGRVPVLLD----GGVRRGTDVFKALALGAQAVLVGRP 309 (364)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCCCChHHHHHHHHHHHHHhcCCCEEee----CCCCCHHHHHHHHHcCCCEEEECHH
Confidence 4557899999999999984221 11233444433333445777763 677777777766 799999998
Q ss_pred ccc
Q psy6272 312 QLA 314 (547)
Q Consensus 312 DLg 314 (547)
=|-
T Consensus 310 ~l~ 312 (364)
T PLN02535 310 VIY 312 (364)
T ss_pred HHh
Confidence 764
No 343
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=52.69 E-value=1.2e+02 Score=30.25 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=83.5
Q ss_pred CCCChhhHHH-HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHH-------Hhh-cCE
Q psy6272 235 PVIADRDKHV-VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEI-------IME-SDG 305 (547)
Q Consensus 235 p~lt~~D~~d-i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeI-------l~~-~Dg 305 (547)
|..|++|.+. ++.|.++|+..|+++ +..+..+++.|. +.++++.+=|==|.|-...+.- ++. +|.
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdE 86 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVN----PSYVPLAKELLK--GTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADE 86 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHHHHHHHcC--CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 6678888665 468999999999884 568888899885 4567777666545544332222 222 343
Q ss_pred EEEc--CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC--CCCcccccccCccchhhHHHHHHhCccEEeeCC
Q psy6272 306 VVLN--RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP--DHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQ 381 (547)
Q Consensus 306 ImIa--rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le--~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk 381 (547)
|=+- -|.|- +=.++.+..-.++|.+.|. |+|+-+ +|| .-+..|+. ....+ ++..|+|.+=-|-
T Consensus 87 iDvv~n~g~l~-~g~~~~v~~ei~~i~~~~~--g~~lKv---IlE~~~L~~~ei~-----~a~~i--a~eaGADfvKTsT 153 (211)
T TIGR00126 87 VDMVINIGALK-DGNEEVVYDDIRAVVEACA--GVLLKV---IIETGLLTDEEIR-----KACEI--CIDAGADFVKTST 153 (211)
T ss_pred EEeecchHhhh-CCcHHHHHHHHHHHHHHcC--CCeEEE---EEecCCCCHHHHH-----HHHHH--HHHhCCCEEEeCC
Confidence 3221 11110 1112345555555666664 888765 555 11223441 11333 5667999997761
Q ss_pred ----cchHHHHHHHHHHHHHH
Q psy6272 382 ----SEQAHHRVDILKEILKK 398 (547)
Q Consensus 382 ----~Eta~eaV~~m~~I~~~ 398 (547)
+-...+.|+.|.+++..
T Consensus 154 Gf~~~gat~~dv~~m~~~v~~ 174 (211)
T TIGR00126 154 GFGAGGATVEDVRLMRNTVGD 174 (211)
T ss_pred CCCCCCCCHHHHHHHHHHhcc
Confidence 22233888888888653
No 344
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=52.62 E-value=2.4e+02 Score=27.78 Aligned_cols=139 Identities=14% Similarity=0.166 Sum_probs=76.5
Q ss_pred CChhhHHHH-HHHHHcCCcEEEEc-ccCChhhHHHHHHHHHhcCCCceEEEEec-CHHHHhh-HHHHHhh-cC--EEEEc
Q psy6272 237 IADRDKHVV-DLIVREAVDIIIMS-SVTGANSIREMRGMLEDHVDRVLILAKIE-TLLGMEY-MDEIIME-SD--GVVLN 309 (547)
Q Consensus 237 lt~~D~~di-~~~~~~g~d~I~~s-fV~sa~di~~~r~~l~~~~~~i~IiakIE-t~~av~n-ldeIl~~-~D--gImIa 309 (547)
++..++..| +...+.|+|.|=+. ..-+.++.+.++.+.+.... ..+.+..- ..+.++. ++.+... .| .+++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~~ 89 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASEDDFEQVRRLREALPN-ARLQALCRANEEDIERAVEAAKEAGIDIIRIFIS 89 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSHHHHHHHHHHHHHHHS-SEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCHHHHHHhhhhhhhhcc-cccceeeeehHHHHHHHHHhhHhccCCEEEecCc
Confidence 455665554 56677999999888 45566677777665543322 33333322 2223333 2222222 35 44445
Q ss_pred CCccccc----CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHH-hCccEEeeCCcch
Q psy6272 310 RIQLAVA----TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQ-DGADVVVLTQSEQ 384 (547)
Q Consensus 310 rgDLg~e----~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~-~g~D~vmLsk~Et 384 (547)
-.|+-.. ...++....-.++++.++++|..|.+........+.+++ .+++..+. .|+|.+.|. +|
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~--------~~~~~~~~~~g~~~i~l~--Dt 159 (237)
T PF00682_consen 90 VSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEEL--------LELAEALAEAGADIIYLA--DT 159 (237)
T ss_dssp TSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHH--------HHHHHHHHHHT-SEEEEE--ET
T ss_pred ccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHH--------HHHHHHHHHcCCeEEEee--Cc
Confidence 4552111 223455556667899999999999876542212233333 66665544 499999996 55
Q ss_pred HH
Q psy6272 385 AH 386 (547)
Q Consensus 385 a~ 386 (547)
+=
T Consensus 160 ~G 161 (237)
T PF00682_consen 160 VG 161 (237)
T ss_dssp TS
T ss_pred cC
Confidence 54
No 345
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=52.43 E-value=1.6e+02 Score=29.60 Aligned_cols=101 Identities=7% Similarity=0.035 Sum_probs=64.6
Q ss_pred HHHHHHHHHcCCcEEEEcc------c--CChhhHHHHHHHHHhcCCCceEEEE--------e------cCHHHHhhHHHH
Q psy6272 242 KHVVDLIVREAVDIIIMSS------V--TGANSIREMRGMLEDHVDRVLILAK--------I------ETLLGMEYMDEI 299 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf------V--~sa~di~~~r~~l~~~~~~i~Iiak--------I------Et~~av~nldeI 299 (547)
.+.++.+.+.|+++|=+.. . -+..+++++++.+++.|-.+..+.- + +..++++.+...
T Consensus 16 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 95 (275)
T PRK09856 16 EHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLA 95 (275)
T ss_pred HHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHH
Confidence 4568899999999998842 1 2345789999999877654432211 0 112345566655
Q ss_pred Hhh-----cCEEEEcCCcccccCCh----HHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 300 IME-----SDGVVLNRIQLAVATSV----EVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 300 l~~-----~DgImIargDLg~e~~~----e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
+.. +..|.+.+|..+..-.. +.+...-+++...|.++|..+.+
T Consensus 96 i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i 147 (275)
T PRK09856 96 MDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLIL 147 (275)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 555 36778877765433222 34555667788888888887766
No 346
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=52.39 E-value=1.2e+02 Score=30.44 Aligned_cols=101 Identities=9% Similarity=0.022 Sum_probs=62.9
Q ss_pred HHHHHHHHHcCCcEEEEcccC----------ChhhHHHHHHHHHhcCCCceEEEE-------e---c---CHHHHhhHHH
Q psy6272 242 KHVVDLIVREAVDIIIMSSVT----------GANSIREMRGMLEDHVDRVLILAK-------I---E---TLLGMEYMDE 298 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~----------sa~di~~~r~~l~~~~~~i~Iiak-------I---E---t~~av~nlde 298 (547)
.+.++++.++|+|+|=+++.. +.+++.++++.+.+.|-.+.-+.- + + ..++++++..
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~ 98 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKK 98 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHH
Confidence 445889999999999887543 356789999999888755443210 1 1 1235666777
Q ss_pred HHhhc-----CEEEEcCCccccc----CChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 299 IIMES-----DGVVLNRIQLAVA----TSVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 299 Il~~~-----DgImIargDLg~e----~~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
.+..+ +.|.+..++...+ -..+.+...-+++...+.++|..+.+
T Consensus 99 ~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 99 AIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 66663 5666653332111 12234444555677778888876665
No 347
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=52.26 E-value=3e+02 Score=28.85 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=32.7
Q ss_pred HHHHHHHhc-----CCcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCch
Q psy6272 429 ACVNAALKC-----QAVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLG 471 (547)
Q Consensus 429 aav~~a~~~-----~a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~ 471 (547)
-+.|+..++ ..++||+..-||.|+.-++ .++|+++|++|.+..
T Consensus 169 ~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~ 220 (331)
T PRK03910 169 CALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSR 220 (331)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 345555554 4799999999999986544 467999999999853
No 348
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=52.23 E-value=61 Score=32.11 Aligned_cols=67 Identities=18% Similarity=0.181 Sum_probs=46.1
Q ss_pred HHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHc-CCcEEEEc
Q psy6272 267 IREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQ-GKPFLVVG 344 (547)
Q Consensus 267 i~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~-gKPvi~aT 344 (547)
++.+.+.+.+.+..+.+-+.-+.... +|+++++.-.|.|+-+-.++ .....+...|.++ ++|++.++
T Consensus 83 a~~a~~~l~~lnp~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~D~~----------~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 83 VEALKENLLEINPFVEIEAHNEKIDE-DNIEELFKDCDIVVEAFDNA----------ETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEEeeecCH-HHHHHHHcCCCEEEECCCCH----------HHHHHHHHHHHHhCCCCEEEee
Confidence 44566667777777777665554443 57888888888888773222 2344677889998 99999874
No 349
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=52.13 E-value=1.5e+02 Score=32.40 Aligned_cols=120 Identities=14% Similarity=0.129 Sum_probs=71.0
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHH-
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQ- 407 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~- 407 (547)
+...|+.+|.|+.+. .|...-. .-+.+.-..|++.++.. + +-.++++...++.++-. .++..+
T Consensus 128 lA~~aa~~Gi~~~Iv-----vP~~~~~--------~K~~~ir~~GAeVi~~~-~-~~~~a~~~a~~~a~~~g-~~~v~~~ 191 (396)
T TIGR03528 128 VAWAANQLGQKSVVY-----MPKGSAQ--------IRLENIRAEGAECTITD-L-NYDDAVRLAWKMAQENG-WVMVQDT 191 (396)
T ss_pred HHHHHHHcCCCEEEE-----EeCCCcH--------HHHHHHHhcCCEEEEEC-C-CHHHHHHHHHHHHHhcC-cEeeccc
Confidence 567899999999886 4443333 45566677899988876 3 44477777777765422 111110
Q ss_pred ---HHHHhhhcCCCCCChhhHHHHHHHHHHHhcC------CcEEEEEcCCchHHHHHHh-----cCCCCC-EEEEeCc
Q psy6272 408 ---VFEDLCALACPPLDPAHSIVIACVNAALKCQ------AVAIIVITCSGYSAKLVSK-----YRPQCP-ILAVSSL 470 (547)
Q Consensus 408 ---~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~------a~aIvv~T~sG~tA~~isk-----~RP~~p-Iiavt~~ 470 (547)
-|++ .+.....--...+.|+..+++ .++||+.+-+|..+-.++. ++|..| |++|-|.
T Consensus 192 ~~~~~~~------~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~ 263 (396)
T TIGR03528 192 AWEGYEK------IPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPD 263 (396)
T ss_pred ccccccc------CchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccC
Confidence 0110 011112222334556665553 6889988888876544433 367765 8888885
No 350
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=51.86 E-value=50 Score=34.06 Aligned_cols=64 Identities=19% Similarity=0.274 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHH--HhhHHHHHhh-cCEEEEc
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLG--MEYMDEIIME-SDGVVLN 309 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a--v~nldeIl~~-~DgImIa 309 (547)
...+.+..+++.|+|+|.+-.+ ++++++++.+++... .++.|.| --| .+|+.++++. +|+|-++
T Consensus 189 ~t~eea~~A~~~gaD~I~ld~~-~~e~l~~~v~~i~~~-~~i~i~a----sGGIt~~ni~~~a~~Gad~Isvg 255 (269)
T cd01568 189 ETLEEAEEALEAGADIIMLDNM-SPEELKEAVKLLKGL-PRVLLEA----SGGITLENIRAYAETGVDVISTG 255 (269)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhccC-CCeEEEE----ECCCCHHHHHHHHHcCCCEEEEc
Confidence 4567788889999999999876 568888887777543 3444443 233 5789998888 8999875
No 351
>PRK07591 threonine synthase; Validated
Probab=51.79 E-value=2.1e+02 Score=31.31 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=75.7
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+++|.|+.+. .|..+.. .-+...-..||+.+... +. --++++.+.+++++.+..++..+
T Consensus 152 lA~~aa~~Gl~~~I~-----vP~~~~~--------~k~~~~~~~GA~Vi~v~-g~-~d~a~~~a~~~~~~~~~~~~~n~- 215 (421)
T PRK07591 152 VAAHAARAGLDSCVF-----IPADLEA--------GKIVGTLVYGPTLVAVD-GN-YDDVNRLCSELANEHEGWGFVNI- 215 (421)
T ss_pred HHHHHHHcCCCEEEE-----EcCCCCH--------HHHHHHHHcCCEEEEEC-CC-HHHHHHHHHHHHHhcCCEEEecC-
Confidence 566789999999886 5554444 55666778899999887 64 23666666666554322111000
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHHh----c-------CCCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKCQ---AVAIIVITCSGYSAKLVSK----Y-------RPQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~~---a~aIvv~T~sG~tA~~isk----~-------RP~~pIiavt~~~ 471 (547)
...+ ...+--..-+.|+..+++ .++||+.+-+|.+..-+++ + +|...|++|-+..
T Consensus 216 -------~~~p-~~ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g 284 (421)
T PRK07591 216 -------NLRP-YYAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEG 284 (421)
T ss_pred -------CCCc-ccccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCC
Confidence 0000 011112223567777774 6899999999998876554 3 6888999999863
No 352
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=51.68 E-value=3.6e+02 Score=31.89 Aligned_cols=74 Identities=12% Similarity=0.146 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChh----hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGAN----SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRI 311 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~----di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIarg 311 (547)
++.++++.+++.|++.|.+.. |+-. |+....+++...-++..+|+ ..|+.+-+++... +||++||-.
T Consensus 168 h~~~el~~a~~~ga~iiGINn-RdL~tf~vd~~~t~~L~~~ip~~~~~Vs----ESGI~~~~d~~~l~~~G~davLIGes 242 (695)
T PRK13802 168 HTREEIERAIAAGAKVIGINA-RNLKDLKVDVNKYNELAADLPDDVIKVA----ESGVFGAVEVEDYARAGADAVLVGEG 242 (695)
T ss_pred CCHHHHHHHHhCCCCEEEEeC-CCCccceeCHHHHHHHHhhCCCCcEEEE----cCCCCCHHHHHHHHHCCCCEEEECHH
Confidence 578889999999999998864 2222 34444444433334555555 3566666666444 699999977
Q ss_pred cccccCC
Q psy6272 312 QLAVATS 318 (547)
Q Consensus 312 DLg~e~~ 318 (547)
-+..+=+
T Consensus 243 lm~~~dp 249 (695)
T PRK13802 243 VATADDH 249 (695)
T ss_pred hhCCCCH
Confidence 6665443
No 353
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=51.59 E-value=1.7e+02 Score=30.45 Aligned_cols=166 Identities=19% Similarity=0.244 Sum_probs=91.5
Q ss_pred HHHHHHhcCCCceEEE---EecC---HHHHhhHHHHHhh-----cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCC
Q psy6272 270 MRGMLEDHVDRVLILA---KIET---LLGMEYMDEIIME-----SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGK 338 (547)
Q Consensus 270 ~r~~l~~~~~~i~Iia---kIEt---~~av~nldeIl~~-----~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gK 338 (547)
+..+......++.|+| .+|. .++++|+++++.. +|+++.-+|=+.. .+.-....+
T Consensus 13 l~rif~~~tG~~~i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~~G~~~~--------------~~~~y~~dv 78 (265)
T COG1830 13 LARIFNRGTGRLLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMTPGIARS--------------VHRGYAHDV 78 (265)
T ss_pred HHHHhcCCCCCEEEEecccccccCCCcccccCHHHHHHHHHhcCCCEEEecHhHHhh--------------cCccccCCc
Confidence 3333433234566666 3554 3577777777766 3788776664431 111223467
Q ss_pred cEEEEcCCCC-----CCCcccccccCccchhhHHHHHHhCccEEe----eCCcchHHHHHHHHHHHHHHhhhh-----hh
Q psy6272 339 PFLVVGDILP-----DHNVEEYSDVSIGDMNDVNSIVQDGADVVV----LTQSEQAHHRVDILKEILKKTESV-----LW 404 (547)
Q Consensus 339 Pvi~aTq~Le-----~PtraE~~~~~~~~~~Dv~nav~~g~D~vm----Lsk~Eta~eaV~~m~~I~~~aE~~-----~~ 404 (547)
|+++- |. .|+.-.. .....+=.|+..|+|+|- +. +|+-.+.++.+.++..++..+ .|
T Consensus 79 plivk---l~~~t~l~~~~~~~-----~~~~~ve~ai~lgadAV~~~Vy~G-se~e~~~i~~~~~v~~~a~~~Gmp~v~~ 149 (265)
T COG1830 79 PLIVK---LNGSTSLSPDPNDQ-----VLVATVEDAIRLGADAVGATVYVG-SETEREMIENISQVVEDAHELGMPLVAW 149 (265)
T ss_pred CEEEE---eccccccCCCcccc-----eeeeeHHHHHhCCCcEEEEEEecC-CcchHHHHHHHHHHHHHHHHcCCceEEE
Confidence 77762 22 2322111 122455567788999875 45 688789999999998888875 12
Q ss_pred hHHHHHHhhhcC-CCCCChhhHHHHHHHHHHHhcCCcEEEEEcCCc--hHHHHHHhcCCCCCEE
Q psy6272 405 EKQVFEDLCALA-CPPLDPAHSIVIACVNAALKCQAVAIIVITCSG--YSAKLVSKYRPQCPIL 465 (547)
Q Consensus 405 ~~~~f~~~~~~~-~~~~~~~~~ia~aav~~a~~~~a~aIvv~T~sG--~tA~~isk~RP~~pIi 465 (547)
-+. .- ... ..+.-..+.++. |.+++.+++|+ ||=.-.+| .+=+.+-++-| +||+
T Consensus 150 ~Yp---Rg-~~~~~~~~~d~~~v~~-aaRlaaelGAD-IiK~~ytg~~e~F~~vv~~~~-vpVv 206 (265)
T COG1830 150 AYP---RG-PAIKDEYHRDADLVGY-AARLAAELGAD-IIKTKYTGDPESFRRVVAACG-VPVV 206 (265)
T ss_pred Eec---cC-CcccccccccHHHHHH-HHHHHHHhcCC-eEeecCCCChHHHHHHHHhCC-CCEE
Confidence 110 00 000 001122344444 45577789999 55444455 55666666666 6654
No 354
>KOG2178|consensus
Probab=51.52 E-value=14 Score=40.21 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=54.0
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEEeCchhccccccccccceEEeecCC-----------CCCCCCCCH
Q psy6272 436 KCQAVAIIVITCSGYSAKLVSK----YRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRN-----------PQADWSMDV 500 (547)
Q Consensus 436 ~~~a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~~-----------~~~~~~~d~ 500 (547)
+.+++..||-|+||.||--+|. ..|..|-|.|||=- -+.|+ ..|++.++. ....|.. .
T Consensus 283 ~vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvTPIC--PhSLS----FRPIIlPds~~L~I~i~~dsR~~awvS-f 355 (409)
T KOG2178|consen 283 KVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTPIC--PHSLS----FRPIILPDSSELRVEVPLDSRSTAWVS-F 355 (409)
T ss_pred EEecceEEEecCCchhhhHhhcCCceecCCCCeEEEeccC--CCccc----ccceEccCccEEEEEeCccccccceEE-e
Confidence 4689999999999999998875 89999999999831 12233 235554431 1223321 0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCeEEEEecc
Q psy6272 501 DCRVQFAIQHGMEIGIISPGDPLVLINGW 529 (547)
Q Consensus 501 d~~I~~a~~~~k~~g~~~~Gd~vvvv~g~ 529 (547)
-++.+.-+..||.+-+++..
T Consensus 356 ---------DG~~r~El~~GD~i~I~tS~ 375 (409)
T KOG2178|consen 356 ---------DGRPRQELSLGDYIDITTSR 375 (409)
T ss_pred ---------cCcchhhccCCceEEEEecc
Confidence 25677779999999887764
No 355
>PRK07048 serine/threonine dehydratase; Validated
Probab=51.49 E-value=1.3e+02 Score=31.48 Aligned_cols=118 Identities=16% Similarity=0.135 Sum_probs=68.2
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+.+|.|+.+. .|..+.- .-+...-..|++.+... +. .-++.+...++.++-. .++.. -
T Consensus 87 lA~~a~~~G~~~~vv-----vp~~~~~--------~k~~~~~~~GAeV~~~~-~~-~~~~~~~a~~l~~~~g-~~~~~-~ 149 (321)
T PRK07048 87 IALSARLLGIPATIV-----MPQDAPA--------AKVAATRGYGGEVVTYD-RY-TEDREEIGRRLAEERG-LTLIP-P 149 (321)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHHCCCEEEEEC-CC-HHHHHHHHHHHHHhcC-CEEEC-C
Confidence 567899999999885 3433222 23334455799999887 43 2244443333332211 11110 0
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHHhc----CCCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVSKY----RPQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~isk~----RP~~pIiavt~~~ 471 (547)
|+. + +..+.-..-+.|+.+++ ..++||+-.-+|.+..-++++ +|.+.|++|-+..
T Consensus 150 ~~~-------~-~~~~g~~t~~~EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~ 209 (321)
T PRK07048 150 YDH-------P-HVIAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEA 209 (321)
T ss_pred CCC-------c-chhhccchHHHHHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 110 0 11111123334555555 479999999999997766654 7999999999964
No 356
>PRK08526 threonine dehydratase; Provisional
Probab=51.39 E-value=1.3e+02 Score=32.87 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=74.7
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+..|.|+.+. .|..+.. ..+...-..|++.++.. ++.-++++...+++++-. ..|..+
T Consensus 83 vA~aa~~~Gi~~~Iv-----mP~~~p~--------~k~~~~r~~GA~Vv~~g--~~~~~a~~~a~~~a~~~g-~~~v~p- 145 (403)
T PRK08526 83 VAISAKKFGIKAVIV-----MPEATPL--------LKVSGTKALGAEVILKG--DNYDEAYAFALEYAKENN-LTFIHP- 145 (403)
T ss_pred HHHHHHHcCCCEEEE-----EcCCCCH--------HHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhcC-CEeeCC-
Confidence 667899999999885 4544444 55555667899988764 555577766666544322 111100
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCchh
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLGY 472 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~~ 472 (547)
|++ ......-..-+.|+..++ ..++||+..-+|.++.-++ ..+|.+.|++|-+...
T Consensus 146 ~~~--------~~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~ 206 (403)
T PRK08526 146 FED--------EEVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGA 206 (403)
T ss_pred CCC--------HHHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 110 011111233366666665 5899999998988775444 4679999999998643
No 357
>PF02599 CsrA: Global regulator protein family; InterPro: IPR003751 The RNA-binding protein CsrA (carbon storage regulator) is a new kind of global regulator, which facilitates specific mRNA decay []. CsrA is entirely contained within a globular complex of approximately 18 CsrA-H6 subunits and a single RNA, CsrB. CsrA binds to the CsrB RNA molecule to form the Csr regulatory system which has a strong negative regulatory effect on glycogen biosynthesis, glyconeogenesis and glycogen catabolism and a positive regulatory effect on glycolysis [].; GO: 0003723 RNA binding, 0006109 regulation of carbohydrate metabolic process, 0006402 mRNA catabolic process; PDB: 1Y00_B 2JPP_A 1T3O_A 1VPZ_A.
Probab=51.21 E-value=36 Score=26.92 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=24.6
Q ss_pred cCCCCEEEEeceeEEEEEEEeCCeEEEEEE
Q psy6272 185 VIPDDIVYIDRNIKLKVVEKENNDVHCTVI 214 (547)
Q Consensus 185 v~~Gd~I~idD~I~l~V~~v~~~~v~~~V~ 214 (547)
-++|+.|.|+|.|..+|.++.++.+..-+.
T Consensus 6 Rk~gE~I~Ig~~I~I~Vl~i~~~~VklgI~ 35 (54)
T PF02599_consen 6 RKVGESIVIGDDIEITVLEISGGQVKLGID 35 (54)
T ss_dssp EETT-EEEETTTEEEEEEEEETTEEEEEEE
T ss_pred ccCCCEEEECCCEEEEEEEEcCCEEEEEEE
Confidence 378999999999999999999998876543
No 358
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=51.19 E-value=2.4e+02 Score=28.39 Aligned_cols=119 Identities=12% Similarity=0.160 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHcCCcEEEEcc--cCChhhHHHHHHHHHhcCCCceE-------EEEecCH-HHHhhHHHHHhh-----cC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSS--VTGANSIREMRGMLEDHVDRVLI-------LAKIETL-LGMEYMDEIIME-----SD 304 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sf--V~sa~di~~~r~~l~~~~~~i~I-------iakIEt~-~av~nldeIl~~-----~D 304 (547)
.+.++++..++.|++-+.+.- +++++-+.++.+.. ++++.+ ..|+... +.-.++.++++. ++
T Consensus 85 rs~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~---~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~ 161 (241)
T PRK14024 85 RDDESLEAALATGCARVNIGTAALENPEWCARVIAEH---GDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCS 161 (241)
T ss_pred CCHHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHh---hhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCC
Confidence 356889999999999887653 34555555544433 333221 1111000 001123333332 35
Q ss_pred EEEEc-CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHH---HhCccEEeeC
Q psy6272 305 GVVLN-RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIV---QDGADVVVLT 380 (547)
Q Consensus 305 gImIa-rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav---~~g~D~vmLs 380 (547)
.+++- |.==+..-|+ .+..+. +.++..+.|++.+..+. + . .|+.... ..|+|++|+.
T Consensus 162 ~iiv~~~~~~g~~~G~-d~~~i~----~i~~~~~ipviasGGi~---s---~--------~D~~~l~~~~~~GvdgV~ig 222 (241)
T PRK14024 162 RYVVTDVTKDGTLTGP-NLELLR----EVCARTDAPVVASGGVS---S---L--------DDLRALAELVPLGVEGAIVG 222 (241)
T ss_pred EEEEEeecCCCCccCC-CHHHHH----HHHhhCCCCEEEeCCCC---C---H--------HHHHHHhhhccCCccEEEEe
Confidence 55543 3222233343 333322 23445689999988743 2 3 6666553 3599999998
No 359
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=51.15 E-value=1.6e+02 Score=31.72 Aligned_cols=132 Identities=17% Similarity=0.107 Sum_probs=66.9
Q ss_pred CCCChhhHHHH--------HHHHHcCCcEEEEcccC-------------Ch---------hhHH---HHHHHHHh-cCCC
Q psy6272 235 PVIADRDKHVV--------DLIVREAVDIIIMSSVT-------------GA---------NSIR---EMRGMLED-HVDR 280 (547)
Q Consensus 235 p~lt~~D~~di--------~~~~~~g~d~I~~sfV~-------------sa---------~di~---~~r~~l~~-~~~~ 280 (547)
..||..|++.+ +.|.+.|+|+|-+..-. .. +..+ ++.+.+.+ .+.+
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~ 217 (370)
T cd02929 138 REMDKDDIKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDD 217 (370)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCC
Confidence 45788887766 47788999999764333 21 1122 22222222 3566
Q ss_pred ceEEEEecCHH------------HHhhHHHHHhhcCEEEEcCCcccccCCh-HHHH-HHHHHHHHHH-HHcCCcEEEEcC
Q psy6272 281 VLILAKIETLL------------GMEYMDEIIMESDGVVLNRIQLAVATSV-EVTF-LAQKMIAARC-NKQGKPFLVVGD 345 (547)
Q Consensus 281 i~IiakIEt~~------------av~nldeIl~~~DgImIargDLg~e~~~-e~v~-~~qk~ii~~c-~~~gKPvi~aTq 345 (547)
..|..+|--.+ +++-++.+-+..|.+-+..|-....... ...+ ..+....+.. +..++||+....
T Consensus 218 ~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~ 297 (370)
T cd02929 218 CAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTSKPVVGVGR 297 (370)
T ss_pred ceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHCCCCEEEeCC
Confidence 66767763211 1222222222257777776643321000 0000 0111222222 346899998765
Q ss_pred CCCCCCcccccccCccchhhHHHHHHhC-ccEEeeC
Q psy6272 346 ILPDHNVEEYSDVSIGDMNDVNSIVQDG-ADVVVLT 380 (547)
Q Consensus 346 ~Le~PtraE~~~~~~~~~~Dv~nav~~g-~D~vmLs 380 (547)
+- +| .++..++.+| +|.|++.
T Consensus 298 i~-~~-------------~~~~~~l~~g~~D~V~~g 319 (370)
T cd02929 298 FT-SP-------------DKMVEVVKSGILDLIGAA 319 (370)
T ss_pred CC-CH-------------HHHHHHHHcCCCCeeeec
Confidence 32 12 3445577767 9999998
No 360
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=51.11 E-value=1e+02 Score=30.20 Aligned_cols=143 Identities=20% Similarity=0.259 Sum_probs=81.7
Q ss_pred CCCChhhHHH-HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHH-------hhHHHHHhh-cCE
Q psy6272 235 PVIADRDKHV-VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGM-------EYMDEIIME-SDG 305 (547)
Q Consensus 235 p~lt~~D~~d-i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av-------~nldeIl~~-~Dg 305 (547)
|..|..|... ++.+.+.|+|.|+++ +..++.+++.+.. ..+.+-+=+=.+.|- ...++-++. +|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~~~~~~l~~--~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAde 85 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN----PCFVPLAREALKG--SGVKVCTVIGFPLGATTTEVKVAEAREAIADGADE 85 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc----HHHHHHHHHHcCC--CCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 6778888665 467888899999987 6677777777753 334444444333332 234444444 565
Q ss_pred EEEcCCccccc-C-ChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCC--CcccccccCccchhhHH-HHHHhCccEEeeC
Q psy6272 306 VVLNRIQLAVA-T-SVEVTFLAQKMIAARCNKQGKPFLVVGDILPDH--NVEEYSDVSIGDMNDVN-SIVQDGADVVVLT 380 (547)
Q Consensus 306 ImIargDLg~e-~-~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~P--traE~~~~~~~~~~Dv~-nav~~g~D~vmLs 380 (547)
|-+- -++|.- - ..+.+..--.++.+.|. |+|+.+ ++|.+ +..++ ..++ -++..|+|.+=-|
T Consensus 86 vdvv-~~~g~~~~~~~~~~~~ei~~v~~~~~--g~~lkv---I~e~~~l~~~~i--------~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 86 IDMV-INIGALKSGDYEAVYEEIAAVVEACG--GAPLKV---ILETGLLTDEEI--------IKACEIAIEAGADFIKTS 151 (203)
T ss_pred EEEe-ecHHHHhCCCHHHHHHHHHHHHHhcC--CCeEEE---EEecCCCCHHHH--------HHHHHHHHHhCCCEEEcC
Confidence 5443 111110 0 11345555555666664 888755 34411 12344 3333 3667799998876
Q ss_pred Ccch----HHHHHHHHHHHHH
Q psy6272 381 QSEQ----AHHRVDILKEILK 397 (547)
Q Consensus 381 k~Et----a~eaV~~m~~I~~ 397 (547)
-|-+ ..+.|+.|.++++
T Consensus 152 TG~~~~~at~~~v~~~~~~~~ 172 (203)
T cd00959 152 TGFGPGGATVEDVKLMKEAVG 172 (203)
T ss_pred CCCCCCCCCHHHHHHHHHHhC
Confidence 1222 2288888888876
No 361
>PRK15005 universal stress protein F; Provisional
Probab=51.02 E-value=34 Score=30.45 Aligned_cols=41 Identities=27% Similarity=0.293 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCC--------chHHHHHHhcCCCCCEEEE
Q psy6272 426 IVIACVNAALKCQAVAIIVITCS--------GYSAKLVSKYRPQCPILAV 467 (547)
Q Consensus 426 ia~aav~~a~~~~a~aIvv~T~s--------G~tA~~isk~RP~~pIiav 467 (547)
.+...++.|.+.+++.||+-|.. |+++..+.+.= +|||+.+
T Consensus 95 p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a-~cpVlvV 143 (144)
T PRK15005 95 PKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHA-ECSVLVV 143 (144)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhC-CCCEEEe
Confidence 34556677888999999998764 56677776664 4999876
No 362
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=51.02 E-value=51 Score=35.44 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=49.6
Q ss_pred CChhhHHHHHHHHHcCCcEEEEcccCC--------hhhHHHHHHHHHhcCCCceEEE--EecCHHHHhhHHHHHhh-cCE
Q psy6272 237 IADRDKHVVDLIVREAVDIIIMSSVTG--------ANSIREMRGMLEDHVDRVLILA--KIETLLGMEYMDEIIME-SDG 305 (547)
Q Consensus 237 lt~~D~~di~~~~~~g~d~I~~sfV~s--------a~di~~~r~~l~~~~~~i~Iia--kIEt~~av~nldeIl~~-~Dg 305 (547)
.|-+..+++..|.+.|+|||+++-|-. +-.+..++.+.... +++++| -|- .+|+.+++.. +||
T Consensus 245 ~S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~--~iPv~AiGGI~----~~ni~~l~~~Ga~g 318 (347)
T PRK02615 245 RSTTNPEEMAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEA--PIPWFAIGGID----KSNIPEVLQAGAKR 318 (347)
T ss_pred EecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCCC----HHHHHHHHHcCCcE
Confidence 455678889999999999999977642 33355555554432 466666 341 4688888877 799
Q ss_pred EEEcCCccc
Q psy6272 306 VVLNRIQLA 314 (547)
Q Consensus 306 ImIargDLg 314 (547)
|.+.++=..
T Consensus 319 VAvisaI~~ 327 (347)
T PRK02615 319 VAVVRAIMG 327 (347)
T ss_pred EEEeHHHhC
Confidence 999865544
No 363
>PRK15447 putative protease; Provisional
Probab=50.90 E-value=53 Score=34.32 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=46.8
Q ss_pred cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 303 SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 303 ~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+|+|.+|-..++.-.++ -..-.+++++.|+++||.|.++|+-+ .....|. ..+...+..|.|+|+.+
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-~~~~~e~--------~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-VEAPSEL--------KELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-ccCHHHH--------HHHHHHHhcCCCEEEEe
Confidence 79999996666653332 12333457788999999999998633 1123366 77778888899998876
No 364
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=50.87 E-value=63 Score=32.71 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-++.+++.|.+.+.++.|.+.-+... -+|++++++..|.|+.+-.+ +.....+-+.|+++++|++.+
T Consensus 87 Ka~~a~~~l~~lnp~v~i~~~~~~i~-~~~~~~~~~~~DiVi~~~D~----------~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 87 KVESARAALARINPHIAIETINARLD-DDELAALIAGHDLVLDCTDN----------VATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccCC-HHHHHHHHhcCCEEEecCCC----------HHHHHHHHHHHHHhCCEEEEe
Confidence 35555666777777777766443332 35788889889988887332 234566888999999999975
No 365
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.60 E-value=72 Score=27.37 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhcCCCceEEEEecC--HHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 265 NSIREMRGMLEDHVDRVLILAKIET--LLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 265 ~di~~~r~~l~~~~~~i~IiakIEt--~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
.....+++.+++.|...... -... ...-.+|+.-+.-+|.|++--+-.+ ..+-..+-+.|++.|||++.
T Consensus 10 ~~~~~~~~~~~~~G~~~~~h-g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs--------H~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHH-GRDGGDEKKASRLPSKIKKADLVIVFTDYVS--------HNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEE-ecCCCCccchhHHHHhcCCCCEEEEEeCCcC--------hHHHHHHHHHHHHcCCcEEE
Confidence 34567788888877766665 1111 1223358888888999988744444 33445566789999999998
Q ss_pred E
Q psy6272 343 V 343 (547)
Q Consensus 343 a 343 (547)
+
T Consensus 81 ~ 81 (97)
T PF10087_consen 81 S 81 (97)
T ss_pred E
Confidence 5
No 366
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=50.47 E-value=2.8e+02 Score=28.02 Aligned_cols=121 Identities=15% Similarity=0.133 Sum_probs=64.7
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhh---------------HHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh---
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANS---------------IREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--- 302 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~d---------------i~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--- 302 (547)
+.++++.+.+.|+|.|.+.+--|... +..+.++..+.|..+.+-.--.+..-.+.+.++++.
T Consensus 71 ~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~ 150 (259)
T cd07939 71 VKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQE 150 (259)
T ss_pred CHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHH
Confidence 46678889999999998877444332 223333445556555444433443334455554443
Q ss_pred --cCEEEEcCCc-ccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEe
Q psy6272 303 --SDGVVLNRIQ-LAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVV 378 (547)
Q Consensus 303 --~DgImIargD-Lg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vm 378 (547)
+|.|.++ | .|.- .++++...-+.+. +..+.|+.+.++ ++.--| . .-...|+..|+|.+=
T Consensus 151 ~G~~~i~l~--DT~G~~-~P~~v~~lv~~l~---~~~~~~l~~H~H--n~~Gla-~--------An~laAi~aG~~~vd 212 (259)
T cd07939 151 AGADRLRFA--DTVGIL-DPFTTYELIRRLR---AATDLPLEFHAH--NDLGLA-T--------ANTLAAVRAGATHVS 212 (259)
T ss_pred CCCCEEEeC--CCCCCC-CHHHHHHHHHHHH---HhcCCeEEEEec--CCCChH-H--------HHHHHHHHhCCCEEE
Confidence 3665554 4 4433 3344544444343 344688888776 111111 1 233467788887653
No 367
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=50.44 E-value=1.9e+02 Score=30.33 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCcEEEEc------ccCChhhHHHH-HHHHHhcCCCceEEEEec---CHHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMS------SVTGANSIREM-RGMLEDHVDRVLILAKIE---TLLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~s------fV~sa~di~~~-r~~l~~~~~~i~IiakIE---t~~av~nldeIl~~-~DgImIar 310 (547)
.+.++|.++.|+|+|++. +--|.++=.++ +...+..+.++.+|+.+= |.++++....--+. +||||+-+
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~ 107 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVP 107 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeC
Confidence 455678999999999873 23344444444 444555677888998753 34555544443333 69999876
Q ss_pred CcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 311 IQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 311 gDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-.+-- .+.+.+...-+.|.++ .+.|+|+-
T Consensus 108 PyY~k-~~~~gl~~hf~~ia~a---~~lPvilY 136 (299)
T COG0329 108 PYYNK-PSQEGLYAHFKAIAEA---VDLPVILY 136 (299)
T ss_pred CCCcC-CChHHHHHHHHHHHHh---cCCCEEEE
Confidence 54432 2245666666656554 48998874
No 368
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=50.44 E-value=89 Score=36.96 Aligned_cols=131 Identities=18% Similarity=0.148 Sum_probs=66.8
Q ss_pred CCChhhHHHH--------HHHHHcCCcEEEEccc-------------CCh------------hhHHHHHHHHHh-cCCCc
Q psy6272 236 VIADRDKHVV--------DLIVREAVDIIIMSSV-------------TGA------------NSIREMRGMLED-HVDRV 281 (547)
Q Consensus 236 ~lt~~D~~di--------~~~~~~g~d~I~~sfV-------------~sa------------~di~~~r~~l~~-~~~~i 281 (547)
.||..|++.+ +.+.+.|+|+|-+..- +.. .-+.++.+.+.+ .+.+.
T Consensus 540 ~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~ 619 (765)
T PRK08255 540 EMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEK 619 (765)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCC
Confidence 5788887766 4778899999976433 111 122233333333 24567
Q ss_pred eEEEEecCHHHH------hhHHHHHhh-----cCEEEEcCCcccccCChHHHHHHHHHHHHHHHH-cCCcEEEEcCCCCC
Q psy6272 282 LILAKIETLLGM------EYMDEIIME-----SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNK-QGKPFLVVGDILPD 349 (547)
Q Consensus 282 ~IiakIEt~~av------~nldeIl~~-----~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~-~gKPvi~aTq~Le~ 349 (547)
.|..||-..+-. +..-++++. .|.|=|..|--.-......-...|....+..++ .++||+....+. +
T Consensus 620 ~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv~~~G~i~-~ 698 (765)
T PRK08255 620 PMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAGIATIAVGAIS-E 698 (765)
T ss_pred eeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcCCEEEEeCCCC-C
Confidence 777887532211 111122222 488887654322110000000112222223333 589999876643 1
Q ss_pred CCcccccccCccchhhHHHHHHhC-ccEEeeC
Q psy6272 350 HNVEEYSDVSIGDMNDVNSIVQDG-ADVVVLT 380 (547)
Q Consensus 350 PtraE~~~~~~~~~~Dv~nav~~g-~D~vmLs 380 (547)
. .++-.++..| +|.||+.
T Consensus 699 -----~--------~~a~~~l~~g~~D~v~~g 717 (765)
T PRK08255 699 -----A--------DHVNSIIAAGRADLCALA 717 (765)
T ss_pred -----H--------HHHHHHHHcCCcceeeEc
Confidence 2 4445567666 9999997
No 369
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=50.12 E-value=1.6e+02 Score=32.82 Aligned_cols=110 Identities=14% Similarity=0.157 Sum_probs=66.4
Q ss_pred HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCCc-------c
Q psy6272 245 VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRIQ-------L 313 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIargD-------L 313 (547)
.+.|++.|+|+|-++.=. -....+|..++ .. .++. + +..+++|+..+ +|.|.+|+-= -
T Consensus 270 ~dlAl~~gAdGVHLGQeD--L~~~~aR~ilg---~~-~iIG-v----StHs~eEl~~A~~~gaDYI~lGPIFpT~TK~~~ 338 (437)
T PRK12290 270 WQLAIKHQAYGVHLGQED--LEEANLAQLTD---AG-IRLG-L----STHGYYELLRIVQIQPSYIALGHIFPTTTKQMP 338 (437)
T ss_pred HHHHHHcCCCEEEcChHH--cchhhhhhhcC---CC-CEEE-E----ecCCHHHHHHHhhcCCCEEEECCccCCCCCCCC
Confidence 466788899999888411 12344455442 11 1221 1 34566776665 5999999742 2
Q ss_pred cccCChHHHHHHHHHHH--HHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 314 AVATSVEVTFLAQKMIA--ARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 314 g~e~~~e~v~~~qk~ii--~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
..-+|++.+..+++.+- ..++..++|++.-..|- . .++......|+|++-+.
T Consensus 339 ~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI~-------~--------~Ni~~vl~aGa~GVAVV 392 (437)
T PRK12290 339 SKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGID-------Q--------SNAEQVWQCGVSSLAVV 392 (437)
T ss_pred CCCCCHHHHHHHHHHhhhccccccCCCCEEEECCcC-------H--------HHHHHHHHcCCCEEEEe
Confidence 33466677766655321 12344589988766542 2 66677788899999886
No 370
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=50.03 E-value=1.8e+02 Score=31.42 Aligned_cols=109 Identities=22% Similarity=0.183 Sum_probs=0.0
Q ss_pred ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCCcccccCCh-HHHHHHHHHHHHHHHHcC
Q psy6272 263 GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRIQLAVATSV-EVTFLAQKMIAARCNKQG 337 (547)
Q Consensus 263 sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIargDLg~e~~~-e~v~~~qk~ii~~c~~~g 337 (547)
+-++++.+++.. +.+||.| ++-+-+++... +|||.|+ |-=|-.+.. ..-...-.+|..++ ...
T Consensus 213 ~w~~i~~~~~~~-----~~pvivK-----gv~~~~da~~~~~~G~~~i~vs-~hGGr~~d~~~~~~~~L~~i~~~~-~~~ 280 (356)
T PF01070_consen 213 TWDDIEWIRKQW-----KLPVIVK-----GVLSPEDAKRAVDAGVDGIDVS-NHGGRQLDWGPPTIDALPEIRAAV-GDD 280 (356)
T ss_dssp SHHHHHHHHHHC-----SSEEEEE-----EE-SHHHHHHHHHTT-SEEEEE-SGTGTSSTTS-BHHHHHHHHHHHH-TTS
T ss_pred CHHHHHHHhccc-----CCceEEE-----ecccHHHHHHHHhcCCCEEEec-CCCcccCccccccccccHHHHhhh-cCC
Q ss_pred CcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH-------HHHHHHHHHHHH
Q psy6272 338 KPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-------HRVDILKEILKK 398 (547)
Q Consensus 338 KPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~-------eaV~~m~~I~~~ 398 (547)
.|++....+- -- +|++.++..|||++.+. ..... +.|.-+-++.++
T Consensus 281 ~~i~~dgGir------~g--------~Dv~kalaLGA~~v~ig-r~~l~~l~~~g~~gv~~~~~~l~~ 333 (356)
T PF01070_consen 281 IPIIADGGIR------RG--------LDVAKALALGADAVGIG-RPFLYALAAGGEEGVERVLEILKE 333 (356)
T ss_dssp SEEEEESS--------SH--------HHHHHHHHTT-SEEEES-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEeCCCC------CH--------HHHHHHHHcCCCeEEEc-cHHHHHHHHhhHHHHHHHHHHHHH
No 371
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=50.01 E-value=80 Score=32.67 Aligned_cols=134 Identities=13% Similarity=0.175 Sum_probs=70.3
Q ss_pred CcCCCCCChh-hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEE---ecCHHHHhh-HHHHHhh--c
Q psy6272 231 TFNLPVIADR-DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAK---IETLLGMEY-MDEIIME--S 303 (547)
Q Consensus 231 ~~~lp~lt~~-D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~Iiak---IEt~~av~n-ldeIl~~--~ 303 (547)
.+.+|.+||- |..++..+.+. +|++-++- ++..+...++. +++.+ -.|..| --|++-+.+ .+-|... .
T Consensus 71 ~~glpvvTeV~~~~~~~~vae~-vDilQIgA-rn~rn~~LL~a-~g~t~--kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~ 145 (258)
T TIGR01362 71 EFGVPILTDVHESSQCEPVAEV-VDIIQIPA-FLCRQTDLLVA-AAKTG--RIVNVKKGQFLSPWDMKNVVEKVLSTGNK 145 (258)
T ss_pred HhCCceEEEeCCHHHHHHHHhh-CcEEEeCc-hhcchHHHHHH-HhccC--CeEEecCCCcCCHHHHHHHHHHHHHcCCC
Confidence 5678888874 78888989888 99999883 44444444433 22222 233333 012222222 2223322 2
Q ss_pred CEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccc-----cccCccch---hhHH-HHHHhCc
Q psy6272 304 DGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEY-----SDVSIGDM---NDVN-SIVQDGA 374 (547)
Q Consensus 304 DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~-----~~~~~~~~---~Dv~-nav~~g~ 374 (547)
+.++.-||= ..++-++..--. -+-..++.|-|||+ +||.+-. -+.|-|+. .-++ .|+..|+
T Consensus 146 ~viLcERG~---tf~y~r~~~D~~-~ip~~k~~~~PVi~------DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~Ga 215 (258)
T TIGR01362 146 NILLCERGT---SFGYNNLVVDMR-SLPIMRELGCPVIF------DATHSVQQPGGLGGASGGLREFVPTLARAAVAVGI 215 (258)
T ss_pred cEEEEeCCC---CcCCCCcccchh-hhHHHHhcCCCEEE------eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCC
Confidence 677888884 334422111000 11111345899998 8887510 00111111 2233 4788899
Q ss_pred cEEee
Q psy6272 375 DVVVL 379 (547)
Q Consensus 375 D~vmL 379 (547)
|++|+
T Consensus 216 DGl~i 220 (258)
T TIGR01362 216 DGLFM 220 (258)
T ss_pred CEEEE
Confidence 99998
No 372
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=50.01 E-value=1.4e+02 Score=32.20 Aligned_cols=103 Identities=16% Similarity=0.209 Sum_probs=62.0
Q ss_pred HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCCcccc-----
Q psy6272 245 VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRIQLAV----- 315 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIargDLg~----- 315 (547)
++.|+..|+|+|.++.=. -.+..+|..++ .+..|=+ +..|++|+..+ +|.|.+||---+.
T Consensus 210 vdlAl~~~aDGVHLgq~d--l~~~~aR~llg---~~~iIG~------S~Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~ 278 (347)
T PRK02615 210 VDIALAVDADGVHLGQED--LPLAVARQLLG---PEKIIGR------STTNPEEMAKAIAEGADYIGVGPVFPTPTKPGK 278 (347)
T ss_pred HHHHHHcCCCEEEeChhh--cCHHHHHHhcC---CCCEEEE------ecCCHHHHHHHHHcCCCEEEECCCcCCCCCCCC
Confidence 567888899999998522 22456666553 2322322 23445555443 6999999865432
Q ss_pred -cCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 316 -ATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 316 -e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
..|++.+. +.+.....||+.-..+= . .++......|+|+|.+.
T Consensus 279 ~~~Gle~l~-------~~~~~~~iPv~AiGGI~-------~--------~ni~~l~~~Ga~gVAvi 322 (347)
T PRK02615 279 APAGLEYLK-------YAAKEAPIPWFAIGGID-------K--------SNIPEVLQAGAKRVAVV 322 (347)
T ss_pred CCCCHHHHH-------HHHHhCCCCEEEECCCC-------H--------HHHHHHHHcCCcEEEEe
Confidence 23333332 23445679988765531 2 45556667799999987
No 373
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=49.89 E-value=2e+02 Score=30.57 Aligned_cols=125 Identities=10% Similarity=0.079 Sum_probs=66.4
Q ss_pred CCCChhhHHHH--------HHHHHcCCcEEEEccc-------------CChh---------hHHHHHH---HHHh-cCCC
Q psy6272 235 PVIADRDKHVV--------DLIVREAVDIIIMSSV-------------TGAN---------SIREMRG---MLED-HVDR 280 (547)
Q Consensus 235 p~lt~~D~~di--------~~~~~~g~d~I~~sfV-------------~sa~---------di~~~r~---~l~~-~~~~ 280 (547)
..+|..|++.+ +.+.+.|+|+|-+.+- +... ..+-+.+ .+.+ .+.+
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d 219 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD 219 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC
Confidence 45788887766 4777899999977433 2221 1222222 2222 2444
Q ss_pred ceEEEEecCHHH---------HhhHHHHHhh-----cCEEEEcCCcccccCChHHHHHHHHHHHHHHH-HcCCcEEEEcC
Q psy6272 281 VLILAKIETLLG---------MEYMDEIIME-----SDGVVLNRIQLAVATSVEVTFLAQKMIAARCN-KQGKPFLVVGD 345 (547)
Q Consensus 281 i~IiakIEt~~a---------v~nldeIl~~-----~DgImIargDLg~e~~~e~v~~~qk~ii~~c~-~~gKPvi~aTq 345 (547)
.|..||-..+. .+..-+|++. .|.|=|..|...-..+ ..+....+..+ ..++||+....
T Consensus 220 -~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~-----~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 220 -RVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPE-----DQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred -ceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCccc-----ccchHHHHHHHHHcCCCEEEECC
Confidence 47788843321 1222223222 4788776665432221 11112222222 35899998766
Q ss_pred CCCCCCcccccccCccchhhHHHHHHhC-ccEEeeC
Q psy6272 346 ILPDHNVEEYSDVSIGDMNDVNSIVQDG-ADVVVLT 380 (547)
Q Consensus 346 ~Le~PtraE~~~~~~~~~~Dv~nav~~g-~D~vmLs 380 (547)
+ +| .++..++..| +|.|+++
T Consensus 294 i--~~-------------~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 294 Y--DA-------------ESAEAALADGKADLVAFG 314 (338)
T ss_pred C--CH-------------HHHHHHHHcCCCCEEEeC
Confidence 3 12 3445577766 9999998
No 374
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=49.82 E-value=3.2e+02 Score=28.47 Aligned_cols=116 Identities=11% Similarity=0.206 Sum_probs=70.6
Q ss_pred HHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHH
Q psy6272 243 HVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVT 322 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v 322 (547)
+.++.|.+.|. .|....+.+.+.++.+-+..++.+ ..+|.++ +++.+. .+|++.
T Consensus 3 ~lL~~A~~~~y-aV~AfN~~n~e~~~avi~AAe~~~--sPvIi~~---------------------~~~~~~-~~~~~~- 56 (276)
T cd00947 3 ELLKKAREGGY-AVGAFNINNLETLKAILEAAEETR--SPVILQI---------------------SEGAIK-YAGLEL- 56 (276)
T ss_pred HHHHHHHHCCc-eEEEEeeCCHHHHHHHHHHHHHhC--CCEEEEc---------------------Ccchhh-hCCHHH-
Confidence 34566777666 567777788888888877776543 4455443 222221 133333
Q ss_pred HHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH--HHHHHHHHHHHHhh
Q psy6272 323 FLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH--HRVDILKEILKKTE 400 (547)
Q Consensus 323 ~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~--eaV~~m~~I~~~aE 400 (547)
+-..+...++++..||.+... .-. .. .++..|+..|++.||+. +-+.- |-|+.-+++.+.+.
T Consensus 57 --~~~~~~~~a~~~~VPV~lHLD----H~~-~~--------~~i~~ai~~GftSVMiD-~S~l~~eeNi~~t~~vv~~ah 120 (276)
T cd00947 57 --LVAMVKAAAERASVPVALHLD----HGS-SF--------ELIKRAIRAGFSSVMID-GSHLPFEENVAKTKEVVELAH 120 (276)
T ss_pred --HHHHHHHHHHHCCCCEEEECC----CCC-CH--------HHHHHHHHhCCCEEEeC-CCCCCHHHHHHHHHHHHHHHH
Confidence 333445567888999998532 111 23 78889999999999997 53333 55555555544443
No 375
>PRK05638 threonine synthase; Validated
Probab=49.38 E-value=1e+02 Score=33.85 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=73.4
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+++|.|+.+. .|..+.. ..+...-..||+.+... +. ..++++...+++++ +. .++...
T Consensus 127 lA~~aa~~G~~~~i~-----vp~~~~~--------~k~~~~~~~GA~vi~v~-~~-~~~~~~~a~~~~~~-~~-~~~~~~ 189 (442)
T PRK05638 127 VAAYSARAGKEAFVV-----VPRKVDK--------GKLIQMIAFGAKIIRYG-ES-VDEAIEYAEELARL-NG-LYNVTP 189 (442)
T ss_pred HHHHHHHcCCCEEEE-----EeCCCCH--------HHHHHHHhcCcEEEEEC-CC-HHHHHHHHHHHHHh-CC-eEecCC
Confidence 556789999999986 5555444 66667777899999987 53 44666666665432 11 111000
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHh----cCC-----CC-CEEEEeC
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSK----YRP-----QC-PILAVSS 469 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk----~RP-----~~-pIiavt~ 469 (547)
+. .+ ...+....-+.|++.+++.++||+.+-+|.+..-+++ ++| +. .|++|-+
T Consensus 190 ~~-------np-~~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~ 252 (442)
T PRK05638 190 EY-------NI-IGLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQT 252 (442)
T ss_pred CC-------Ch-hHhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEec
Confidence 10 01 1223334455677777789999999999999875554 334 23 5888877
No 376
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=49.25 E-value=2.4e+02 Score=26.82 Aligned_cols=102 Identities=14% Similarity=0.165 Sum_probs=58.3
Q ss_pred hHHHHHHHHHcCCcEEEEcccC-Chhh----HHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh--cCEEEEcCCcc
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVT-GANS----IREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--SDGVVLNRIQL 313 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~-sa~d----i~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--~DgImIargDL 313 (547)
..+.+..+++.|+++|.+-.-. +..+ +.+++......+ ..++.. +--+++.. +||+-++.+|+
T Consensus 15 ~~~~~~~~~~~g~~~v~lR~~~~~~~~~~~~~~~l~~~~~~~~--~~l~i~--------~~~~la~~~g~~GvHl~~~~~ 84 (196)
T TIGR00693 15 LLNRVEAALKGGVTLVQLRDKGSNTRERLALAEKLQELCRRYG--VPFIVN--------DRVDLALALGADGVHLGQDDL 84 (196)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHHHHHHHHHHhC--CeEEEE--------CHHHHHHHcCCCEEecCcccC
Confidence 4566888999999999887543 2222 233344443332 344432 12233433 68999987775
Q ss_pred cccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 314 AVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 314 g~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.. +. .+.....++.+++.++ .. .++..+...|+|.++++
T Consensus 85 ~~----~~--------~r~~~~~~~~ig~s~h--------~~--------~e~~~a~~~g~dyi~~~ 123 (196)
T TIGR00693 85 PA----SE--------ARALLGPDKIIGVSTH--------NL--------EELAEAEAEGADYIGFG 123 (196)
T ss_pred CH----HH--------HHHhcCCCCEEEEeCC--------CH--------HHHHHHhHcCCCEEEEC
Confidence 31 11 1112234566776554 12 45567888899999986
No 377
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=49.21 E-value=2.9e+02 Score=27.79 Aligned_cols=118 Identities=16% Similarity=0.099 Sum_probs=69.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEE-Ec-CCcccccCC
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVV-LN-RIQLAVATS 318 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgIm-Ia-rgDLg~e~~ 318 (547)
...++.+.+.|+|+|++|-. ..++...+.+.+.+.|-+..++..=.| ..+.+..|++. .|.|. ++ .|=-|...+
T Consensus 94 ~~fi~~~~~aG~~giiipDl-~~ee~~~~~~~~~~~g~~~i~~i~P~T--~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~ 170 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDL-PPEEAEEFREAAKEYGLDLIFLVAPTT--PDERIKKIAELASGFIYYVSRTGVTGARTE 170 (242)
T ss_pred HHHHHHHHHCCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCC--CHHHHHHHHhhCCCCEEEEeCCCCCCCccC
Confidence 34578888999999999544 246888888888877765444444333 35667778874 44332 34 233333332
Q ss_pred hHHHHHHHHHHHHHHHH-cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 319 VEVTFLAQKMIAARCNK-QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 319 ~e~v~~~qk~ii~~c~~-~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.. .... ..++..++ .++|+.+...+= + - .++...... +|++...
T Consensus 171 ~~--~~~~-~~i~~lr~~~~~pI~vggGI~---~---~--------e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 171 LP--DDLK-ELIKRIRKYTDLPIAVGFGIS---T---P--------EQAAEVAKY-ADGVIVG 215 (242)
T ss_pred CC--hhHH-HHHHHHHhcCCCcEEEEccCC---C---H--------HHHHHHHcc-CCEEEEC
Confidence 21 1122 22233333 489999876531 1 1 356666666 9999997
No 378
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=49.12 E-value=42 Score=33.84 Aligned_cols=61 Identities=20% Similarity=0.278 Sum_probs=37.7
Q ss_pred hhHHHHHhh--cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHH
Q psy6272 294 EYMDEIIME--SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQ 371 (547)
Q Consensus 294 ~nldeIl~~--~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~ 371 (547)
+.+++++.. .|+|||| |=++++.-.+++..+.| +.++ .+|++. -|...+. +.
T Consensus 15 ~~~~~~~~~~gtdai~vG-GS~~v~~~~~~~~~~ik----~~~~-~~Pvil------fp~~~~~--------------i~ 68 (219)
T cd02812 15 EEIAKLAEESGTDAIMVG-GSDGVSSTLDNVVRLIK----RIRR-PVPVIL------FPSNPEA--------------VS 68 (219)
T ss_pred HHHHHHHHhcCCCEEEEC-CccchhhhHHHHHHHHH----HhcC-CCCEEE------eCCCccc--------------cC
Confidence 446677774 4999999 66665422233333332 2333 699997 5665554 45
Q ss_pred hCccEEeeC
Q psy6272 372 DGADVVVLT 380 (547)
Q Consensus 372 ~g~D~vmLs 380 (547)
.|+|++++.
T Consensus 69 ~~aDa~l~~ 77 (219)
T cd02812 69 PGADAYLFP 77 (219)
T ss_pred cCCCEEEEE
Confidence 799999873
No 379
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=49.07 E-value=2.9e+02 Score=28.57 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=36.1
Q ss_pred cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH----HHHHHHHHHHHHhhhh
Q psy6272 336 QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH----HRVDILKEILKKTESV 402 (547)
Q Consensus 336 ~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~----eaV~~m~~I~~~aE~~ 402 (547)
.+.|||+... + +..+|++.++..|+|+++++ ||+ +-+.+.......+|+-
T Consensus 174 ~~vpVI~egG---------I-----~tpeda~~AmelGAdgVlV~---SAIt~a~dP~~ma~af~~Av~aG 227 (248)
T cd04728 174 ADVPVIVDAG---------I-----GTPSDAAQAMELGADAVLLN---TAIAKAKDPVAMARAFKLAVEAG 227 (248)
T ss_pred CCCcEEEeCC---------C-----CCHHHHHHHHHcCCCEEEEC---hHhcCCCCHHHHHHHHHHHHHHH
Confidence 5789998644 2 22289999999999999998 444 4566666666666653
No 380
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=49.02 E-value=1.3e+02 Score=31.00 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=24.3
Q ss_pred HHcCCcEEE-EcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCc
Q psy6272 334 NKQGKPFLV-VGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQS 382 (547)
Q Consensus 334 ~~~gKPvi~-aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~ 382 (547)
+..+.||++ +++ ...+.|. -..-.-.|+..|+|++|+-|.
T Consensus 191 ~~~~~pV~~ds~H---s~G~r~~------~~~~~~aAva~Ga~gl~iE~H 231 (260)
T TIGR01361 191 KETHLPIIVDPSH---AAGRRDL------VIPLAKAAIAAGADGLMIEVH 231 (260)
T ss_pred HhhCCCEEEcCCC---CCCccch------HHHHHHHHHHcCCCEEEEEeC
Confidence 446899999 666 3332222 001122688899999998633
No 381
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=48.77 E-value=66 Score=32.67 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCcc
Q psy6272 297 DEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGAD 375 (547)
Q Consensus 297 deIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D 375 (547)
+.+... .|+|||| |=++++ .+ .-..+++++++..+|++. -|...+. +..++|
T Consensus 26 ~~~~~~gtdai~vG-GS~~vt--~~----~~~~~v~~ik~~~lPvil------fp~~~~~--------------i~~~aD 78 (232)
T PRK04169 26 EAICESGTDAIIVG-GSDGVT--EE----NVDELVKAIKEYDLPVIL------FPGNIEG--------------ISPGAD 78 (232)
T ss_pred HHHHhcCCCEEEEc-CCCccc--hH----HHHHHHHHHhcCCCCEEE------eCCCccc--------------cCcCCC
Confidence 455554 6999999 655553 22 333456667778899997 4544333 456899
Q ss_pred EEee
Q psy6272 376 VVVL 379 (547)
Q Consensus 376 ~vmL 379 (547)
++++
T Consensus 79 a~l~ 82 (232)
T PRK04169 79 AYLF 82 (232)
T ss_pred EEEE
Confidence 9887
No 382
>PLN02979 glycolate oxidase
Probab=48.77 E-value=95 Score=33.74 Aligned_cols=94 Identities=12% Similarity=0.201 Sum_probs=59.4
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChh------hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcC
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGAN------SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNR 310 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~------di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIar 310 (547)
+.+|...+.+.|+|+|.+|.-.-.. -+..+.+.....+.++.||+- -|+.+=-+|+++ +|+++|||
T Consensus 233 ~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~d----GGIr~G~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 233 TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD----GGVRRGTDVFKALALGASGIFIGR 308 (366)
T ss_pred CHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEe----CCcCcHHHHHHHHHcCCCEEEEcH
Confidence 4677889999999999999764322 233333333333456777763 466666666655 79999999
Q ss_pred Ccc-cccC-ChH----HHHHHHHHHHHHHHHcCC
Q psy6272 311 IQL-AVAT-SVE----VTFLAQKMIAARCNKQGK 338 (547)
Q Consensus 311 gDL-g~e~-~~e----~v~~~qk~ii~~c~~~gK 338 (547)
.=| +... |.+ .+...++++.......|.
T Consensus 309 p~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~ 342 (366)
T PLN02979 309 PVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGC 342 (366)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888 4433 333 334455566555555664
No 383
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=48.48 E-value=40 Score=34.51 Aligned_cols=51 Identities=25% Similarity=0.371 Sum_probs=35.8
Q ss_pred HHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH----HHHHHHHHHHHHhhh
Q psy6272 334 NKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH----HRVDILKEILKKTES 401 (547)
Q Consensus 334 ~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~----eaV~~m~~I~~~aE~ 401 (547)
.++..|||+--. +|.-+|.+.+...|+|+|+++ ||+ .=|.|-+-.....|+
T Consensus 179 e~a~VPviVDAG--------------iG~pSdAa~aMElG~DaVL~N---TAiA~A~DPv~MA~Af~~Av~A 233 (262)
T COG2022 179 EEADVPVIVDAG--------------IGTPSDAAQAMELGADAVLLN---TAIARAKDPVAMARAFALAVEA 233 (262)
T ss_pred HhCCCCEEEeCC--------------CCChhHHHHHHhcccceeehh---hHhhccCChHHHHHHHHHHHHH
Confidence 345899998322 344599999999999999999 444 555555555555554
No 384
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=48.42 E-value=64 Score=32.53 Aligned_cols=63 Identities=17% Similarity=0.345 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCcEEEEcccCC--hhhHHHHHHHHHhcCCCceEEE--EecCHHHHhhHHHHHhh-cCEEEEcCC
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTG--ANSIREMRGMLEDHVDRVLILA--KIETLLGMEYMDEIIME-SDGVVLNRI 311 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~s--a~di~~~r~~l~~~~~~i~Iia--kIEt~~av~nldeIl~~-~DgImIarg 311 (547)
.+..+.+.+.|+|+|.++--.. ..+.+.+++.- .++.||+ -|.|.+-... .+.. +|+|||||+
T Consensus 155 ~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~----~~ipVIgnGgI~s~eda~~---~l~~GaD~VmiGR~ 222 (233)
T cd02911 155 EELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS----TELFIIGNNSVTTIESAKE---MFSYGADMVSVARA 222 (233)
T ss_pred HHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc----CCCEEEEECCcCCHHHHHH---HHHcCCCEEEEcCC
Confidence 4445677789999987753332 33555555542 3577777 4666554443 3444 899999999
No 385
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=48.27 E-value=1.3e+02 Score=31.53 Aligned_cols=120 Identities=19% Similarity=0.124 Sum_probs=68.7
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+++|.|+.+. .|..+.- .-+...-..||+.++.. +....++.+...++.++ +...+|-.-
T Consensus 66 lA~~a~~~G~~~~iv-----~p~~~~~--------~k~~~l~~~GA~v~~~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~ 130 (316)
T cd06448 66 AAYAARKLGVPCTIV-----VPESTKP--------RVVEKLRDEGATVVVHG-KVWWEADNYLREELAEN-DPGPVYVHP 130 (316)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHHcCCEEEEEC-CchHHHHHHHHHHHHhc-cCCcEEeCC
Confidence 567899999999886 3443222 33444556799988876 44222444433333322 101111100
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhcC----CcEEEEEcCCchHHHHHHh----cC-CCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKCQ----AVAIIVITCSGYSAKLVSK----YR-PQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~~----a~aIvv~T~sG~tA~~isk----~R-P~~pIiavt~~~ 471 (547)
|. .+ ...+.-...+.|+..+++ .++||+-.-+|.+..-+++ ++ |+.+|++|-|..
T Consensus 131 ~~-------n~-~~~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g 194 (316)
T cd06448 131 FD-------DP-LIWEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEG 194 (316)
T ss_pred CC-------Cc-hhhccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 10 01 111111234566666654 6899999999988765543 55 999999999854
No 386
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=48.14 E-value=69 Score=33.40 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEE--ecCHHHHhhHHHHHhh-cCEEEEc
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAK--IETLLGMEYMDEIIME-SDGVVLN 309 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~Iiak--IEt~~av~nldeIl~~-~DgImIa 309 (547)
...+.+..+++.|+|+|.+... +.++++++.+.+. .++++.|- |- .+|+.++++. +|+|-+|
T Consensus 197 ~tleea~eA~~~gaD~I~LD~~-~~e~l~~~v~~~~---~~i~leAsGGIt----~~ni~~~a~tGvD~Isvg 261 (277)
T PRK05742 197 ESLDELRQALAAGADIVMLDEL-SLDDMREAVRLTA---GRAKLEASGGIN----ESTLRVIAETGVDYISIG 261 (277)
T ss_pred CCHHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhC---CCCcEEEECCCC----HHHHHHHHHcCCCEEEEC
No 387
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=47.96 E-value=2e+02 Score=29.03 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=24.7
Q ss_pred cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 336 QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 336 ~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
.++|||....+. .. .|+..++..|+|+||+.
T Consensus 190 ~~ipVIgnGgI~------s~--------eda~~~l~~GaD~VmiG 220 (233)
T cd02911 190 TELFIIGNNSVT------TI--------ESAKEMFSYGADMVSVA 220 (233)
T ss_pred CCCEEEEECCcC------CH--------HHHHHHHHcCCCEEEEc
Confidence 689999865533 24 88888888999999997
No 388
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=47.78 E-value=1.2e+02 Score=29.91 Aligned_cols=85 Identities=12% Similarity=0.041 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHH--HhhHHHHHhh-cCEEEEcCCcccccCC
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLG--MEYMDEIIME-SDGVVLNRIQLAVATS 318 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a--v~nldeIl~~-~DgImIargDLg~e~~ 318 (547)
..++..+.+.|+|+|.+ |=.+.-....++++.+....++++++- -| .+|+.+.++. +|++-++.+=......
T Consensus 114 ~~E~~~A~~~Gad~vk~-Fpa~~~G~~~l~~l~~~~~~~ipvvai----GGI~~~n~~~~~~aGa~~vav~s~l~~~~~~ 188 (206)
T PRK09140 114 PTEAFAALRAGAQALKL-FPASQLGPAGIKALRAVLPPDVPVFAV----GGVTPENLAPYLAAGAAGFGLGSALYRPGQS 188 (206)
T ss_pred HHHHHHHHHcCCCEEEE-CCCCCCCHHHHHHHHhhcCCCCeEEEE----CCCCHHHHHHHHHCCCeEEEEehHhcccccC
Confidence 35578899999999987 222222344444443322224666652 23 3899999988 7999988543332223
Q ss_pred hHHHHHHHHHHHH
Q psy6272 319 VEVTFLAQKMIAA 331 (547)
Q Consensus 319 ~e~v~~~qk~ii~ 331 (547)
.+++...-+++..
T Consensus 189 ~~~i~~~a~~~~~ 201 (206)
T PRK09140 189 AEEVAERARAFVA 201 (206)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444333433
No 389
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=47.76 E-value=3.8e+02 Score=28.65 Aligned_cols=114 Identities=8% Similarity=0.017 Sum_probs=71.9
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCCh-
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSV- 319 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~~- 319 (547)
.+.++.+++.++.+|.++|- ++..+++ +.+ ..++++.++-|..-...+ .+. +|+|++-=.+=|-+.|.
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G-~P~~~~~----lk~--~Gi~v~~~v~s~~~A~~a---~~~GaD~vVaqG~EAGGH~G~~ 141 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGG-RPDQARA----LEA--IGISTYLHVPSPGLLKQF---LENGARKFIFEGRECGGHVGPR 141 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCC-ChHHHHH----HHH--CCCEEEEEeCCHHHHHHH---HHcCCCEEEEecCcCcCCCCCC
Confidence 45788899999999999875 4444443 332 368889888776544433 333 79999764444444442
Q ss_pred HHHHHHHHHHHHHHHH-------cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCc--------cEEeeC
Q psy6272 320 EVTFLAQKMIAARCNK-------QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGA--------DVVVLT 380 (547)
Q Consensus 320 e~v~~~qk~ii~~c~~-------~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~--------D~vmLs 380 (547)
.-+.+.+ +++..... ..+|||.|..+- .- ..++.+...|+ +++.+.
T Consensus 142 ~t~~L~~-~v~~~l~~~~~~~~~~~iPViAAGGI~------dg--------r~~aaalaLGA~~~~~Ga~~GV~mG 202 (320)
T cd04743 142 SSFVLWE-SAIDALLAANGPDKAGKIHLLFAGGIH------DE--------RSAAMVSALAAPLAERGAKVGVLMG 202 (320)
T ss_pred CchhhHH-HHHHHHHHhhcccccCCccEEEEcCCC------CH--------HHHHHHHHcCCcccccccccEEEEc
Confidence 1222222 23333322 269999998853 23 66677788888 799987
No 390
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=47.63 E-value=36 Score=38.04 Aligned_cols=49 Identities=16% Similarity=0.311 Sum_probs=39.5
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHH
Q psy6272 54 LTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKL 103 (547)
Q Consensus 54 ~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~ 103 (547)
+.++=+.||+.-.+.+.++.|+++|+++.-++ +|+..+.+.+ +++.+|+
T Consensus 216 ~l~V~aai~~~~~~~e~a~~L~~agvdvivvD~a~g~~~~vl~-~i~~i~~ 265 (486)
T PRK05567 216 RLRVGAAVGVGADNEERAEALVEAGVDVLVVDTAHGHSEGVLD-RVREIKA 265 (486)
T ss_pred CEEEEeecccCcchHHHHHHHHHhCCCEEEEECCCCcchhHHH-HHHHHHh
Confidence 34555566755567999999999999999999 9999887777 7777776
No 391
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=47.58 E-value=2.9e+02 Score=28.91 Aligned_cols=115 Identities=10% Similarity=0.206 Sum_probs=71.5
Q ss_pred HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHH
Q psy6272 244 VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTF 323 (547)
Q Consensus 244 di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~ 323 (547)
.++.|.+.+. .|..-.+.+.+.++.+-+..++.+ ..+|.++ +++.+.. .|.+.
T Consensus 9 il~~A~~~~y-aV~AfN~~n~e~~~avi~AAee~~--sPvIiq~---------------------~~~~~~~-~g~~~-- 61 (284)
T PRK09195 9 MLNNAQRGGY-AVPAFNIHNLETMQVVVETAAELH--SPVIIAG---------------------TPGTFSY-AGTEY-- 61 (284)
T ss_pred HHHHHHHcCc-eEEEEEeCCHHHHHHHHHHHHHhC--CCEEEEc---------------------ChhHHhh-CCHHH--
Confidence 4667777665 556666778888888877776653 4555554 2222211 23332
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH--HHHHHHHHHHHHhh
Q psy6272 324 LAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH--HRVDILKEILKKTE 400 (547)
Q Consensus 324 ~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~--eaV~~m~~I~~~aE 400 (547)
+...+...++++..||.+.- +... .. .++..|+..|++.||+. +-+.- |-|+.-+++.+.+.
T Consensus 62 -~~~~~~~~A~~~~VPV~lHL----DHg~-~~--------e~i~~Ai~~GftSVM~D-gS~l~~eeNi~~T~~vv~~Ah 125 (284)
T PRK09195 62 -LLAIVSAAAKQYHHPLALHL----DHHE-KF--------DDIAQKVRSGVRSVMID-GSHLPFAQNISLVKEVVDFCH 125 (284)
T ss_pred -HHHHHHHHHHHCCCCEEEEC----CCCC-CH--------HHHHHHHHcCCCEEEeC-CCCCCHHHHHHHHHHHHHHHH
Confidence 34456677889999999842 2221 34 78899999999999997 54433 55555444444443
No 392
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=47.47 E-value=76 Score=32.93 Aligned_cols=134 Identities=13% Similarity=0.149 Sum_probs=71.4
Q ss_pred CcCCCCCChh-hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEE---ecCHHHHhh-HHHHHhh--c
Q psy6272 231 TFNLPVIADR-DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAK---IETLLGMEY-MDEIIME--S 303 (547)
Q Consensus 231 ~~~lp~lt~~-D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~Iiak---IEt~~av~n-ldeIl~~--~ 303 (547)
.+.+|.+||- |..+++.+.+. +|++-++- ++..+...+++ +++.+ -.|..| --|++-+.+ .+-|.+. .
T Consensus 79 ~~GlpvvTeV~~~~~~~~v~~~-~DilQIgA-rn~rn~~LL~a-~g~t~--kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~ 153 (264)
T PRK05198 79 TFGVPVLTDVHEPEQAAPVAEV-VDVLQIPA-FLCRQTDLLVA-AAKTG--KVVNIKKGQFLAPWDMKNVVDKVREAGND 153 (264)
T ss_pred HHCCceEEEeCCHHHHHHHHhh-CcEEEECc-hhcchHHHHHH-HhccC--CeEEecCCCcCCHHHHHHHHHHHHHcCCC
Confidence 5778888874 78888999998 99998883 44444443333 22222 233333 112222222 2333333 2
Q ss_pred CEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccc-----cccCccch---hhHH-HHHHhCc
Q psy6272 304 DGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEY-----SDVSIGDM---NDVN-SIVQDGA 374 (547)
Q Consensus 304 DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~-----~~~~~~~~---~Dv~-nav~~g~ 374 (547)
+.++.-||= ..++-++..--. -+-..++.+-|||+ +||.+-. -..|-|+. -.++ .|+..|+
T Consensus 154 ~vilcERG~---tf~y~r~~~D~~-~vp~~k~~~lPVi~------DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~Ga 223 (264)
T PRK05198 154 KIILCERGT---SFGYNNLVVDMR-GLPIMRETGAPVIF------DATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGV 223 (264)
T ss_pred eEEEEeCCC---CcCCCCeeechh-hhHHHhhCCCCEEE------eCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCC
Confidence 677788884 334431111000 11122247799998 8888610 00111111 2333 6788899
Q ss_pred cEEee
Q psy6272 375 DVVVL 379 (547)
Q Consensus 375 D~vmL 379 (547)
|++|+
T Consensus 224 dGl~i 228 (264)
T PRK05198 224 AGLFI 228 (264)
T ss_pred CEEEE
Confidence 99998
No 393
>PTZ00344 pyridoxal kinase; Provisional
Probab=47.37 E-value=1.4e+02 Score=30.78 Aligned_cols=112 Identities=14% Similarity=0.138 Sum_probs=72.6
Q ss_pred cCCCCCChhhHHHHHHHHH-----cCCcEEEEcccCChhhHHHHHHHHHh---cCCCceEEEE---------ecCHHHHh
Q psy6272 232 FNLPVIADRDKHVVDLIVR-----EAVDIIIMSSVTGANSIREMRGMLED---HVDRVLILAK---------IETLLGME 294 (547)
Q Consensus 232 ~~lp~lt~~D~~di~~~~~-----~g~d~I~~sfV~sa~di~~~r~~l~~---~~~~i~Iiak---------IEt~~av~ 294 (547)
..-|.+++.+.+.+...+. ..+++|..-|+-+++.+..+.+++.+ .+.++.++.= .-..+..+
T Consensus 52 ~~g~~i~~~~~~~~l~~l~~~~~~~~~~~v~sG~l~~~~~~~~i~~~l~~~~~~~~~~~vv~DPv~~~~g~l~~~~~~~~ 131 (296)
T PTZ00344 52 IKGHRLDLNELITLMDGLRANNLLSDYTYVLTGYINSADILREVLATVKEIKELRPKLIFLCDPVMGDDGKLYVKEEVVD 131 (296)
T ss_pred ccCeeCCHHHHHHHHHHHHhcCCcccCCEEEECCCCCHHHHHHHHHHHHHHHHhCCCceEEECCccccCCceEeCHHHHH
Confidence 3456778877777765553 35799999999999999999998863 2223344332 23466677
Q ss_pred hHHHHHhhcCEEEEcCCcccccCChH--HHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 295 YMDEIIMESDGVVLNRIQLAVATSVE--VTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 295 nldeIl~~~DgImIargDLg~e~~~e--~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
.+.+++..+|.+....-++..=.|.+ ....+ ++..+...+.|.+.++.|
T Consensus 132 ~~~~ll~~~dii~pN~~E~~~L~g~~~~~~~~~-~~~~~~l~~~g~~~VvVT 182 (296)
T PTZ00344 132 AYRELIPYADVITPNQFEASLLSGVEVKDLSDA-LEAIDWFHEQGIPVVVIT 182 (296)
T ss_pred HHHHHhhhCCEEeCCHHHHHHHhCCCCCCHHHH-HHHHHHHHHhCCCEEEEE
Confidence 78888999999999888866544432 22222 223334444576655555
No 394
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=47.36 E-value=93 Score=33.16 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=66.1
Q ss_pred CCChhhHHHH--------HHHHHcCCcEEEEccc-------------CCh---------hhHHHHHHHH---HhcCCCce
Q psy6272 236 VIADRDKHVV--------DLIVREAVDIIIMSSV-------------TGA---------NSIREMRGML---EDHVDRVL 282 (547)
Q Consensus 236 ~lt~~D~~di--------~~~~~~g~d~I~~sfV-------------~sa---------~di~~~r~~l---~~~~~~i~ 282 (547)
.||..|++.+ +++.+.|+|+|-+..- +.. ...+-+.+.+ .+.- +..
T Consensus 131 ~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~ 209 (337)
T PRK13523 131 EMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW-DGP 209 (337)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCC
Confidence 5788888776 4778899999976433 121 1122222222 2222 345
Q ss_pred EEEEecCHH----H--HhhHHHHHhh-----cCEEEEcCCcccc-cCC-hH--HHHHHHHHHHHHHHHcCCcEEEEcCCC
Q psy6272 283 ILAKIETLL----G--MEYMDEIIME-----SDGVVLNRIQLAV-ATS-VE--VTFLAQKMIAARCNKQGKPFLVVGDIL 347 (547)
Q Consensus 283 IiakIEt~~----a--v~nldeIl~~-----~DgImIargDLg~-e~~-~e--~v~~~qk~ii~~c~~~gKPvi~aTq~L 347 (547)
|..||.-.+ | ++..-+|++. .|.|=|..|-... ... .+ .+..++ +| + +..++||+....+.
T Consensus 210 v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~-~i-k--~~~~ipVi~~G~i~ 285 (337)
T PRK13523 210 LFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAE-HI-R--EHANIATGAVGLIT 285 (337)
T ss_pred eEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHH-HH-H--hhcCCcEEEeCCCC
Confidence 667776322 1 2222233322 4888887763210 001 11 122222 12 1 23579999876643
Q ss_pred CCCCcccccccCccchhhHHHHHHhC-ccEEeeC
Q psy6272 348 PDHNVEEYSDVSIGDMNDVNSIVQDG-ADVVVLT 380 (547)
Q Consensus 348 e~PtraE~~~~~~~~~~Dv~nav~~g-~D~vmLs 380 (547)
.| .++..++..| +|.|++.
T Consensus 286 -~~-------------~~a~~~l~~g~~D~V~~g 305 (337)
T PRK13523 286 -SG-------------AQAEEILQNNRADLIFIG 305 (337)
T ss_pred -CH-------------HHHHHHHHcCCCChHHhh
Confidence 22 3344577777 9999998
No 395
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=47.17 E-value=47 Score=34.33 Aligned_cols=63 Identities=21% Similarity=0.325 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHH--HhhHHHHHhh-cCEEEEcC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLG--MEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a--v~nldeIl~~-~DgImIar 310 (547)
...+.+..+++.|+|+|.+..+. +++++++.+.+. .++++.| --| .+|+.++++. +|+|-++.
T Consensus 190 ~s~eea~~A~~~gaDyI~ld~~~-~e~l~~~~~~~~---~~ipi~A----iGGI~~~ni~~~a~~Gvd~Iav~s 255 (268)
T cd01572 190 ETLEQLKEALEAGADIIMLDNMS-PEELREAVALLK---GRVLLEA----SGGITLENIRAYAETGVDYISVGA 255 (268)
T ss_pred CCHHHHHHHHHcCCCEEEECCcC-HHHHHHHHHHcC---CCCcEEE----ECCCCHHHHHHHHHcCCCEEEEEe
Confidence 45677888999999999999884 677777776653 2455444 223 5789999988 79998875
No 396
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=47.03 E-value=93 Score=31.96 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=51.9
Q ss_pred cCEEEEc-CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH-HHHHhCccEEeeC
Q psy6272 303 SDGVVLN-RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN-SIVQDGADVVVLT 380 (547)
Q Consensus 303 ~DgImIa-rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~-nav~~g~D~vmLs 380 (547)
.||+++. -.--+..+..++-..+.+..++.++ -..||+..+. ..+-.|. -+.+ .|-..|+|++|+.
T Consensus 33 v~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv~---~~s~~~~--------i~~a~~a~~~Gad~v~v~ 100 (285)
T TIGR00674 33 TDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGTG---SNATEEA--------ISLTKFAEDVGADGFLVV 100 (285)
T ss_pred CCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeCC---CccHHHH--------HHHHHHHHHcCCCEEEEc
Confidence 6999984 2122244455555555555555542 2478887643 3333344 3333 4556799999998
Q ss_pred CcchHH-----HHHHHHHHHHHHhhh
Q psy6272 381 QSEQAH-----HRVDILKEILKKTES 401 (547)
Q Consensus 381 k~Eta~-----eaV~~m~~I~~~aE~ 401 (547)
.+.-. +.++....|+..++-
T Consensus 101 -pP~y~~~~~~~i~~~~~~i~~~~~~ 125 (285)
T TIGR00674 101 -TPYYNKPTQEGLYQHFKAIAEEVDL 125 (285)
T ss_pred -CCcCCCCCHHHHHHHHHHHHhcCCC
Confidence 55433 777888888887753
No 397
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=47.01 E-value=1.1e+02 Score=30.97 Aligned_cols=88 Identities=13% Similarity=0.165 Sum_probs=54.3
Q ss_pred ChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccC
Q psy6272 238 ADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVAT 317 (547)
Q Consensus 238 t~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~ 317 (547)
+..-...-..++..|+++|.+--.++. ...+...+.++ +..+++ +..+.+++++...|.+.|+.| |+-..
T Consensus 37 ~GA~ila~l~~~~~g~~~v~~~~~~~~------~~~i~~~~pe~-~~~~~~--~~~~~~~~~~~~~davvig~G-l~~~~ 106 (272)
T TIGR00196 37 SGAPLLAALAALRAGAGLVTVAAPENV------ITLINSVSPEL-IVHRLG--WKVDEDEELLERYDVVVIGPG-LGQDP 106 (272)
T ss_pred CcHHHHHHHHHHHhCCCeEEEEEchhh------HHHHhhcCCEE-EEecch--hhHHHHHhhhccCCEEEEcCC-CCCCH
Confidence 334444445566678888877544422 22343333333 233443 467777888888899999987 54321
Q ss_pred ChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 318 SVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 318 ~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
. ..++++.++++++|+++
T Consensus 107 ~-------~~~l~~~~~~~~~pvVl 124 (272)
T TIGR00196 107 S-------FKKAVEEVLELDKPVVL 124 (272)
T ss_pred H-------HHHHHHHHHhcCCCEEE
Confidence 1 44577888889999988
No 398
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=47.00 E-value=3.4e+02 Score=27.91 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=78.0
Q ss_pred ceeeeCCCCcCCCC-CChhhHHHHHHHHHcCCcEEEE---------------------cccCCh----hhHHHHHHHHHh
Q psy6272 223 QLVTVPRVTFNLPV-IADRDKHVVDLIVREAVDIIIM---------------------SSVTGA----NSIREMRGMLED 276 (547)
Q Consensus 223 Kginlp~~~~~lp~-lt~~D~~di~~~~~~g~d~I~~---------------------sfV~sa----~di~~~r~~l~~ 276 (547)
+|+.|++ ++-+++ +..+.-+.+++..+.|+++|.. .++++- ...+...+.+..
T Consensus 6 ~g~~l~n-pi~~aag~~~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~g~~~~~~~~~~ 84 (300)
T TIGR01037 6 FGIRFKN-PLILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNPGVEAFLEELKP 84 (300)
T ss_pred CCEECCC-CCEeCCcCCCCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCcCHHHHHHHHHH
Confidence 4666665 344444 3344556677777889999988 222221 123332333322
Q ss_pred c--CCCceEEEEe--cCHHHHhhHHHHHhh----cCEEEEcCCcc-----cccCChHHHHHHHHHHHHHHHHc-CCcEEE
Q psy6272 277 H--VDRVLILAKI--ETLLGMEYMDEIIME----SDGVVLNRIQL-----AVATSVEVTFLAQKMIAARCNKQ-GKPFLV 342 (547)
Q Consensus 277 ~--~~~i~IiakI--Et~~av~nldeIl~~----~DgImIargDL-----g~e~~~e~v~~~qk~ii~~c~~~-gKPvi~ 342 (547)
. ..+..++++| .+++.+...-+.++. +|+|=+.=|=- |.+++ .-+..-.+++++.+++ ++|+.+
T Consensus 85 ~~~~~~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~--~~~~~~~eiv~~vr~~~~~pv~v 162 (300)
T TIGR01037 85 VREEFPTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIG--QDPELSADVVKAVKDKTDVPVFA 162 (300)
T ss_pred HhccCCCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccc--cCHHHHHHHHHHHHHhcCCCEEE
Confidence 1 1235789999 556666555555552 57776642210 01111 1122334566667654 899887
Q ss_pred EcCCCCCCCcccccccCccchhhHHH-HHHhCccEEeeC
Q psy6272 343 VGDILPDHNVEEYSDVSIGDMNDVNS-IVQDGADVVVLT 380 (547)
Q Consensus 343 aTq~Le~PtraE~~~~~~~~~~Dv~n-av~~g~D~vmLs 380 (547)
=. .|+-.+. .+++. +...|+|++.++
T Consensus 163 Ki----~~~~~~~--------~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 163 KL----SPNVTDI--------TEIAKAAEEAGADGLTLI 189 (300)
T ss_pred EC----CCChhhH--------HHHHHHHHHcCCCEEEEE
Confidence 42 3444444 56664 456799999987
No 399
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.96 E-value=1.7e+02 Score=28.34 Aligned_cols=105 Identities=13% Similarity=0.180 Sum_probs=62.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCChH
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSVE 320 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~~e 320 (547)
.+.++.+++.|+.+|-+.+ ++....+.+.. +.+....+.+= -=|.--.++++.-++. +||++++--|..
T Consensus 27 ~~~~~~~~~~Gv~~vqlr~-k~~~~~e~~~~-~~~~~~~~~~g--~gtvl~~d~~~~A~~~gAdgv~~p~~~~~------ 96 (187)
T PRK07455 27 LQMAEAVAAGGMRLIEITW-NSDQPAELISQ-LREKLPECIIG--TGTILTLEDLEEAIAAGAQFCFTPHVDPE------ 96 (187)
T ss_pred HHHHHHHHHCCCCEEEEeC-CCCCHHHHHHH-HHHhCCCcEEe--EEEEEcHHHHHHHHHcCCCEEECCCCCHH------
Confidence 3345688899999999986 55444333332 22222221111 1111223556655555 799988744332
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 321 VTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 321 ~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
++..|+..+.+.+..+. -. +++..+...|+|.+=+-
T Consensus 97 --------~~~~~~~~~~~~i~G~~--------t~--------~e~~~A~~~Gadyv~~F 132 (187)
T PRK07455 97 --------LIEAAVAQDIPIIPGAL--------TP--------TEIVTAWQAGASCVKVF 132 (187)
T ss_pred --------HHHHHHHcCCCEEcCcC--------CH--------HHHHHHHHCCCCEEEEC
Confidence 56678889998776533 23 66688888999999775
No 400
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.86 E-value=22 Score=36.66 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=40.5
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEEeCchhccccccccccce-EEeecCC
Q psy6272 436 KCQAVAIIVITCSGYSAKLVSK----YRPQCPILAVSSLGYVCRHLNVYRNIR-PLHYIRN 491 (547)
Q Consensus 436 ~~~a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~~~~~ar~l~l~~GV~-p~~~~~~ 491 (547)
+..++.+||-|.||+||..+|. .-|.++.+.+||=..+. .+.+++.. |+..+..
T Consensus 145 ~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~~l~--~r~~~~~~~plVl~~~ 203 (265)
T PRK04885 145 RFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIASIN--NRVFRTLGSPLILPKH 203 (265)
T ss_pred EEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeecccc--ccccccCCCCEEECCC
Confidence 3578999999999999999998 78999999999866211 12344433 7777643
No 401
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=46.69 E-value=28 Score=38.94 Aligned_cols=46 Identities=30% Similarity=0.439 Sum_probs=38.0
Q ss_pred EEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHH
Q psy6272 57 IMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKL 103 (547)
Q Consensus 57 Ii~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~ 103 (547)
+=+-+|.+.+..+.++.|+++|+++.=|. +||..+...+ +++.||+
T Consensus 216 Vgaav~~~~~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~-~i~~i~~ 262 (475)
T TIGR01303 216 IGAAVGINGDVGGKAKALLDAGVDVLVIDTAHGHQVKMIS-AIKAVRA 262 (475)
T ss_pred ehheeeeCccHHHHHHHHHHhCCCEEEEeCCCCCcHHHHH-HHHHHHH
Confidence 33345777778899999999999999999 9998877777 8887776
No 402
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=46.65 E-value=63 Score=31.49 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=39.3
Q ss_pred HHHHHHhcCCCceEE--EEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 270 MRGMLEDHVDRVLIL--AKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 270 ~r~~l~~~~~~i~Ii--akIEt~~av~nldeIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
+++.+++.|-...++ +.-...+-.+.++..+.. .|||++.+.|-.. ....++.|.++|+||++...
T Consensus 20 ~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~----------~~~~l~~~~~~gIpvv~~d~ 88 (257)
T PF13407_consen 20 AKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDS----------LAPFLEKAKAAGIPVVTVDS 88 (257)
T ss_dssp HHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTT----------THHHHHHHHHTTSEEEEESS
T ss_pred HHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHH----------HHHHHHHHhhcCceEEEEec
Confidence 344445555555543 111122223455555544 7999999888642 12466779999999998643
No 403
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=46.54 E-value=87 Score=35.24 Aligned_cols=151 Identities=14% Similarity=0.105 Sum_probs=92.2
Q ss_pred CeEEEEEEeCcEeCCCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEE---cccCChhhHHHHHHHHHhcCCCceE
Q psy6272 207 NDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIM---SSVTGANSIREMRGMLEDHVDRVLI 283 (547)
Q Consensus 207 ~~v~~~V~~gG~L~s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~---sfV~sa~di~~~r~~l~~~~~~i~I 283 (547)
+.+..++-+|.+ +..|=.||+..++- . +. -.+...-|+|.|-= ..+-|.+|+.++..-|.+.+..-+|
T Consensus 236 ~~ieIKiaQGAK--PGeGG~Lpg~KV~~-----~-IA-~~R~~~pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I 306 (485)
T COG0069 236 DAIEIKIAQGAK--PGEGGQLPGEKVTP-----E-IA-KTRGSPPGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKI 306 (485)
T ss_pred ceEEEEeccCCC--CCCCCCCCCccCCH-----H-HH-HhcCCCCCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeE
Confidence 445555555543 33444556555431 1 11 12333456665432 2467889999999999988766669
Q ss_pred EEEecCHHHHhhHHH-HHhh-cCEEEEcCCcccccCCh-----------H-HHHHHHHHHHHHHHHcCCcEEEEcCCCCC
Q psy6272 284 LAKIETLLGMEYMDE-IIME-SDGVVLNRIQLAVATSV-----------E-VTFLAQKMIAARCNKQGKPFLVVGDILPD 349 (547)
Q Consensus 284 iakIEt~~av~nlde-Il~~-~DgImIargDLg~e~~~-----------e-~v~~~qk~ii~~c~~~gKPvi~aTq~Le~ 349 (547)
..|+=...++..+-. .+++ +|.|.|.=.|=|.-..+ + -++++++.+...- ...|+.+.+..-|
T Consensus 307 ~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~g-lRd~v~l~~~Ggl-- 383 (485)
T COG0069 307 SVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNG-LRDKVKLIADGGL-- 383 (485)
T ss_pred EEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcC-CcceeEEEecCCc--
Confidence 999877777776655 3434 69999997664432222 2 3556666444433 3356655554433
Q ss_pred CCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 350 HNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 350 PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
- -- .||+-|++.|||.+-+.
T Consensus 384 ~---Tg--------~DVaka~aLGAd~v~~g 403 (485)
T COG0069 384 R---TG--------ADVAKAAALGADAVGFG 403 (485)
T ss_pred c---CH--------HHHHHHHHhCcchhhhc
Confidence 1 23 79999999999998886
No 404
>PRK08999 hypothetical protein; Provisional
Probab=46.45 E-value=47 Score=34.33 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=45.7
Q ss_pred CChhhHHHHHHHHHcCCcEEEEcccC---C-----hhhHHHHHHHHHhcCCCceEEEE--ecCHHHHhhHHHHHhh-cCE
Q psy6272 237 IADRDKHVVDLIVREAVDIIIMSSVT---G-----ANSIREMRGMLEDHVDRVLILAK--IETLLGMEYMDEIIME-SDG 305 (547)
Q Consensus 237 lt~~D~~di~~~~~~g~d~I~~sfV~---s-----a~di~~~r~~l~~~~~~i~Iiak--IEt~~av~nldeIl~~-~Dg 305 (547)
+|-++.+++..|.+.|+|||+++-|- | +-.+..++++.+.. ++.++|- | ..+|++++++. +||
T Consensus 231 ~S~h~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~--~~Pv~AiGGI----~~~~~~~~~~~g~~g 304 (312)
T PRK08999 231 ASCHDAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGV--PLPVYALGGL----GPGDLEEAREHGAQG 304 (312)
T ss_pred EecCCHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhC--CCCEEEECCC----CHHHHHHHHHhCCCE
Confidence 45577888899999999999999884 2 23355556555432 4566653 4 35688888877 687
Q ss_pred EEEc
Q psy6272 306 VVLN 309 (547)
Q Consensus 306 ImIa 309 (547)
|-+-
T Consensus 305 va~i 308 (312)
T PRK08999 305 IAGI 308 (312)
T ss_pred EEEE
Confidence 7654
No 405
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=46.38 E-value=1.1e+02 Score=33.40 Aligned_cols=94 Identities=12% Similarity=0.201 Sum_probs=58.8
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChh------hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcC
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGAN------SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNR 310 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~------di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIar 310 (547)
+.+|.+.+.++|+|+|.+|.-.-.. -+..+.+.....+.++.||+- -|+.+=-+|+++ +|+++|||
T Consensus 234 ~~~dA~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~d----GGIr~G~Dv~KALALGA~aV~iGr 309 (367)
T PLN02493 234 TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLD----GGVRRGTDVFKALALGASGIFIGR 309 (367)
T ss_pred CHHHHHHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEe----CCcCcHHHHHHHHHcCCCEEEEcH
Confidence 4677889999999999999764321 233333333333456777763 455555555555 79999999
Q ss_pred Ccc-cccC-ChH----HHHHHHHHHHHHHHHcCC
Q psy6272 311 IQL-AVAT-SVE----VTFLAQKMIAARCNKQGK 338 (547)
Q Consensus 311 gDL-g~e~-~~e----~v~~~qk~ii~~c~~~gK 338 (547)
.=| +... |.+ .+...+.++.......|.
T Consensus 310 ~~l~~l~~~G~~gv~~~l~~l~~el~~~m~l~G~ 343 (367)
T PLN02493 310 PVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGC 343 (367)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 988 5544 333 233455556555556664
No 406
>PRK00208 thiG thiazole synthase; Reviewed
Probab=46.33 E-value=3.4e+02 Score=28.11 Aligned_cols=50 Identities=24% Similarity=0.305 Sum_probs=35.7
Q ss_pred cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH----HHHHHHHHHHHHhhhh
Q psy6272 336 QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH----HRVDILKEILKKTESV 402 (547)
Q Consensus 336 ~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~----eaV~~m~~I~~~aE~~ 402 (547)
.+.|||+... + +-.+|++.++..|+|+++++ |++ +=+.|-......+|+-
T Consensus 174 ~~vpVIveaG---------I-----~tpeda~~AmelGAdgVlV~---SAItka~dP~~ma~af~~Av~aG 227 (250)
T PRK00208 174 ADVPVIVDAG---------I-----GTPSDAAQAMELGADAVLLN---TAIAVAGDPVAMARAFKLAVEAG 227 (250)
T ss_pred cCCeEEEeCC---------C-----CCHHHHHHHHHcCCCEEEEC---hHhhCCCCHHHHHHHHHHHHHHH
Confidence 5899998654 2 12289999999999999998 444 3566666666666653
No 407
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=46.28 E-value=81 Score=33.14 Aligned_cols=65 Identities=12% Similarity=0.200 Sum_probs=49.5
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHH--HhhHHHHHhh-cCEEEEcC
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLG--MEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a--v~nldeIl~~-~DgImIar 310 (547)
..++...+++.|+|+|.+=... +++++++.+.+.+.+.++. ||---| .+|+.+.++. +|+|-+|.
T Consensus 208 tl~ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v~----ieaSGGI~~~ni~~yA~tGvD~Is~ga 275 (289)
T PRK07896 208 SLEQLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTVL----LESSGGLTLDTAAAYAETGVDYLAVGA 275 (289)
T ss_pred CHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCEE----EEEECCCCHHHHHHHHhcCCCEEEeCh
Confidence 4567788899999999999875 8888888887766655654 443333 4688888888 79998874
No 408
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=46.28 E-value=51 Score=35.94 Aligned_cols=95 Identities=22% Similarity=0.232 Sum_probs=55.5
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChh------hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcC
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGAN------SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNR 310 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~------di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIar 310 (547)
..++.+.+++.|+|+|.+|...-.. -+..+.+..+..+.++.||+- -|+.+=-+|+++ +|++++||
T Consensus 255 s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~d----GGIr~g~Di~KALaLGA~~V~iGr 330 (381)
T PRK11197 255 DPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILAD----SGIRNGLDVVRMIALGADTVLLGR 330 (381)
T ss_pred CHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEee----CCcCcHHHHHHHHHcCcCceeEhH
Confidence 3556788999999999998654321 122222222223446777763 577777777666 69999998
Q ss_pred Ccccc--cCChH----HHHHHHHHHHHHHHHcCCc
Q psy6272 311 IQLAV--ATSVE----VTFLAQKMIAARCNKQGKP 339 (547)
Q Consensus 311 gDLg~--e~~~e----~v~~~qk~ii~~c~~~gKP 339 (547)
.=|-. .-|.+ .+...++++-......|..
T Consensus 331 ~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~ 365 (381)
T PRK11197 331 AFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAK 365 (381)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 76532 22333 2333444444444444543
No 409
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=46.24 E-value=2e+02 Score=28.96 Aligned_cols=142 Identities=16% Similarity=0.173 Sum_probs=77.2
Q ss_pred CCCChhhHHH-HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh--------cCE
Q psy6272 235 PVIADRDKHV-VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--------SDG 305 (547)
Q Consensus 235 p~lt~~D~~d-i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--------~Dg 305 (547)
|..|+.|... ++.|.++|+..|+++ +..+..+++.|. +..+++.+=|-=|.|....+.-+.. +|.
T Consensus 17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~~a~~~l~--~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~E 90 (221)
T PRK00507 17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVKLAAELLK--GSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADE 90 (221)
T ss_pred CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHHHHHHHhC--CCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCce
Confidence 6778888665 468999999999987 668888898884 4567777766555554433322222 221
Q ss_pred --EEEcCCcccccCChHHHHHHHHHHHHHHHHcCCc--EEEEcCCCCCCCcccccccCccchhhHHH-HHHhCccEEeeC
Q psy6272 306 --VVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKP--FLVVGDILPDHNVEEYSDVSIGDMNDVNS-IVQDGADVVVLT 380 (547)
Q Consensus 306 --ImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKP--vi~aTq~Le~PtraE~~~~~~~~~~Dv~n-av~~g~D~vmLs 380 (547)
+++..|-+-- =.++.+..--+.+.+.| .+++ ||+=|..| +..|+ .++.. ++..|+|.+--|
T Consensus 91 iD~Vin~~~~~~-g~~~~v~~ei~~v~~~~--~~~~lKvIlEt~~L---~~e~i--------~~a~~~~~~agadfIKTs 156 (221)
T PRK00507 91 IDMVINIGALKS-GDWDAVEADIRAVVEAA--GGAVLKVIIETCLL---TDEEK--------VKACEIAKEAGADFVKTS 156 (221)
T ss_pred EeeeccHHHhcC-CCHHHHHHHHHHHHHhc--CCceEEEEeecCcC---CHHHH--------HHHHHHHHHhCCCEEEcC
Confidence 1222111110 01233433333344434 3433 33334433 34455 45443 666799977665
Q ss_pred Cc----chHHHHHHHHHHHH
Q psy6272 381 QS----EQAHHRVDILKEIL 396 (547)
Q Consensus 381 k~----Eta~eaV~~m~~I~ 396 (547)
-| -...+.|+.|.+.+
T Consensus 157 TG~~~~gat~~~v~~m~~~~ 176 (221)
T PRK00507 157 TGFSTGGATVEDVKLMRETV 176 (221)
T ss_pred CCCCCCCCCHHHHHHHHHHh
Confidence 12 11238888777654
No 410
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=45.85 E-value=48 Score=34.80 Aligned_cols=70 Identities=14% Similarity=0.214 Sum_probs=39.4
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCC-------hhhHHHHHHHHHhcCCCceEEEE--ecCHHHHhhHHHHHhh--cCEEEE
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTG-------ANSIREMRGMLEDHVDRVLILAK--IETLLGMEYMDEIIME--SDGVVL 308 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~s-------a~di~~~r~~l~~~~~~i~Iiak--IEt~~av~nldeIl~~--~DgImI 308 (547)
.-.+.++...+.|+++|.+-- |+ ..+...++...+.. ++.||+- |.|.+ ...++++. +|||||
T Consensus 139 ~~~~~~~~l~~~G~~~i~vH~-Rt~~q~~~~~a~w~~i~~i~~~~--~ipvi~NGdI~s~~---d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 139 ETIEFARILEDAGVSAITVHG-RTRKQRYKGPADWEAIAEIKEAL--PIPVIANGDIFSPE---DAERMLEQTGADGVMI 212 (309)
T ss_dssp HHHHHHHHHHHTT--EEEEEC-S-TTCCCTS---HHHHHHCHHC---TSEEEEESS--SHH---HHHHHCCCH-SSEEEE
T ss_pred HHHHHHHHhhhcccceEEEec-CchhhcCCcccchHHHHHHhhcc--cceeEEcCccCCHH---HHHHHHHhcCCcEEEE
Confidence 346667788899999998742 22 34555555544433 3888885 44443 33334444 799999
Q ss_pred cCCcccc
Q psy6272 309 NRIQLAV 315 (547)
Q Consensus 309 argDLg~ 315 (547)
|||=|+-
T Consensus 213 gRgal~n 219 (309)
T PF01207_consen 213 GRGALGN 219 (309)
T ss_dssp SHHHCC-
T ss_pred chhhhhc
Confidence 9987763
No 411
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=45.82 E-value=96 Score=31.80 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=55.4
Q ss_pred hHHHHHhh-cCEEEEcC-CcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH-HHHH
Q psy6272 295 YMDEIIME-SDGVVLNR-IQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN-SIVQ 371 (547)
Q Consensus 295 nldeIl~~-~DgImIar-gDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~-nav~ 371 (547)
+++-.++. .||++++= .==+..+..++-..+.+.+++.+ .-..||++.+. ..+-.|. -+.+ .|..
T Consensus 27 ~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~-~~~~~vi~gv~---~~st~~~--------i~~a~~a~~ 94 (289)
T PF00701_consen 27 LIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAA-AGRVPVIAGVG---ANSTEEA--------IELARHAQD 94 (289)
T ss_dssp HHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHH-TTSSEEEEEEE---SSSHHHH--------HHHHHHHHH
T ss_pred HHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHc-cCceEEEecCc---chhHHHH--------HHHHHHHhh
Confidence 34444544 79999962 11233444455544555455444 34578888765 4444455 3333 4556
Q ss_pred hCccEEeeCCcch-----HHHHHHHHHHHHHHhhhh
Q psy6272 372 DGADVVVLTQSEQ-----AHHRVDILKEILKKTESV 402 (547)
Q Consensus 372 ~g~D~vmLsk~Et-----a~eaV~~m~~I~~~aE~~ 402 (547)
.|+|++|+. .+. -.+.++..+.|+...+.-
T Consensus 95 ~Gad~v~v~-~P~~~~~s~~~l~~y~~~ia~~~~~p 129 (289)
T PF00701_consen 95 AGADAVLVI-PPYYFKPSQEELIDYFRAIADATDLP 129 (289)
T ss_dssp TT-SEEEEE-ESTSSSCCHHHHHHHHHHHHHHSSSE
T ss_pred cCceEEEEe-ccccccchhhHHHHHHHHHHhhcCCC
Confidence 799999987 553 228888999998666543
No 412
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=45.82 E-value=97 Score=31.94 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=52.8
Q ss_pred hHHHHHhh--cCEEEEcCCccc--ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH-HH
Q psy6272 295 YMDEIIME--SDGVVLNRIQLA--VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN-SI 369 (547)
Q Consensus 295 nldeIl~~--~DgImIargDLg--~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~-na 369 (547)
+++-.++. +|||++. |=-| ..+..++-..+-+..++.++ -.+|+++.+. ..+-.|. .+.+ .|
T Consensus 26 ~i~~l~~~~Gv~gi~~~-GstGE~~~Lt~~Er~~~~~~~~~~~~-~~~~viagv~---~~~~~~a--------i~~a~~a 92 (288)
T cd00954 26 IVDYLIEKQGVDGLYVN-GSTGEGFLLSVEERKQIAEIVAEAAK-GKVTLIAHVG---SLNLKES--------QELAKHA 92 (288)
T ss_pred HHHHHHhcCCCCEEEEC-cCCcCcccCCHHHHHHHHHHHHHHhC-CCCeEEeccC---CCCHHHH--------HHHHHHH
Confidence 34445555 6899887 3222 23333444444444444442 2468887543 3333455 4444 56
Q ss_pred HHhCccEEeeCCcchH-----HHHHHHHHHHHHHh
Q psy6272 370 VQDGADVVVLTQSEQA-----HHRVDILKEILKKT 399 (547)
Q Consensus 370 v~~g~D~vmLsk~Eta-----~eaV~~m~~I~~~a 399 (547)
...|+|++|+. .+.- -+-++....|+..+
T Consensus 93 ~~~Gad~v~~~-~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 93 EELGYDAISAI-TPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred HHcCCCEEEEe-CCCCCCCCHHHHHHHHHHHHHhc
Confidence 77899999986 4433 27788888888766
No 413
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=45.80 E-value=80 Score=33.68 Aligned_cols=67 Identities=15% Similarity=0.202 Sum_probs=47.6
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-+..+++.|.+.+.++.|-+-.+... .+|++++++-.|.|+.+-.++. ....+-..|.++|+|.+.+
T Consensus 81 Ka~aa~~~l~~inp~v~i~~~~~~~~-~~~~~~~~~~~DlVid~~D~~~----------~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 81 KAIAAKEHLRKINSEVEIVPVVTDVT-VEELEELVKEVDLIIDATDNFD----------TRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeccCC-HHHHHHHhcCCCEEEEcCCCHH----------HHHHHHHHHHHcCCCEEEE
Confidence 34566677777788877766554432 4688899888999998854432 3344678899999999975
No 414
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=45.63 E-value=1e+02 Score=30.73 Aligned_cols=77 Identities=12% Similarity=0.073 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCcEEEEcccCC-----hhhHHHHHHHHHhcCCCceEEE--EecCHHHHhhHHHHHhh--cCEEEEcCCc
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTG-----ANSIREMRGMLEDHVDRVLILA--KIETLLGMEYMDEIIME--SDGVVLNRIQ 312 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~s-----a~di~~~r~~l~~~~~~i~Iia--kIEt~~av~nldeIl~~--~DgImIargD 312 (547)
.+.++.+.+.|+|+|.++-+.. .-+...++++.+.. ++++++ -|-++ +++.++++. +||+|+||.-
T Consensus 152 ~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~---~di~~~l~~~g~dgv~vg~al 226 (243)
T cd04731 152 VEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAV--NIPVIASGGAGKP---EHFVEAFEEGGADAALAASIF 226 (243)
T ss_pred HHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCCEEEeCCCCCH---HHHHHHHHhCCCCEEEEeHHH
Confidence 4556778899999999976653 12334444444332 455655 24433 344455554 7999999998
Q ss_pred ccccCChHHHH
Q psy6272 313 LAVATSVEVTF 323 (547)
Q Consensus 313 Lg~e~~~e~v~ 323 (547)
..-.++++++.
T Consensus 227 ~~~~~~~~~~~ 237 (243)
T cd04731 227 HFGEYTIAELK 237 (243)
T ss_pred HcCCCCHHHHH
Confidence 88888876643
No 415
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=45.44 E-value=1.2e+02 Score=31.69 Aligned_cols=91 Identities=13% Similarity=0.148 Sum_probs=54.2
Q ss_pred HHHHhh-cCEEEEc-CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHH-HHHHhC
Q psy6272 297 DEIIME-SDGVVLN-RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVN-SIVQDG 373 (547)
Q Consensus 297 deIl~~-~DgImIa-rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~-nav~~g 373 (547)
+..+.. +|||++. ---=...+..++-..+.+..++.+ .-.+||++.+- ..+-.|. -+.+ .|-..|
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv~---~~~t~~a--------i~~a~~A~~~G 103 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGAT---TLNTRDT--------IARTRALLDLG 103 (309)
T ss_pred HHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEec---cCCHHHH--------HHHHHHHHHhC
Confidence 333443 6999985 111223344455555555555554 34588887654 2222344 3333 455569
Q ss_pred ccEEeeCCcchHH-----HHHHHHHHHHHHhh
Q psy6272 374 ADVVVLTQSEQAH-----HRVDILKEILKKTE 400 (547)
Q Consensus 374 ~D~vmLsk~Eta~-----eaV~~m~~I~~~aE 400 (547)
+|++|+. .+.-. +.++....|+..++
T Consensus 104 ad~vlv~-~P~y~~~~~~~l~~yf~~va~a~~ 134 (309)
T cd00952 104 ADGTMLG-RPMWLPLDVDTAVQFYRDVAEAVP 134 (309)
T ss_pred CCEEEEC-CCcCCCCCHHHHHHHHHHHHHhCC
Confidence 9999998 66322 78888888888774
No 416
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=45.40 E-value=1e+02 Score=31.17 Aligned_cols=87 Identities=9% Similarity=0.124 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCcEEEEcccCCh-----hhHHHHHHHHHhcCCCceEEEE--ecCHHHHhhHHHHHhh--cCEEEEcCCc
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGA-----NSIREMRGMLEDHVDRVLILAK--IETLLGMEYMDEIIME--SDGVVLNRIQ 312 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa-----~di~~~r~~l~~~~~~i~Iiak--IEt~~av~nldeIl~~--~DgImIargD 312 (547)
.+.++...+.|+|.|.++-+.+- -+...+++..+.. ++++++- |-+.+ .+.++++. +||+|+|+..
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~---di~~~~~~g~~dgv~~g~a~ 232 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPE---HFYEAFTKGKADAALAASVF 232 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHH---HHHHHHHcCCcceeeEhHHH
Confidence 45567788999999999776552 2344455544432 4566652 33322 33344443 6999999988
Q ss_pred ccccCChHHHHHHHHHHHHHHHHcCCcE
Q psy6272 313 LAVATSVEVTFLAQKMIAARCNKQGKPF 340 (547)
Q Consensus 313 Lg~e~~~e~v~~~qk~ii~~c~~~gKPv 340 (547)
..-++++++ +.+.|+++|.|+
T Consensus 233 ~~~~~~~~~-------~~~~~~~~gi~~ 253 (254)
T TIGR00735 233 HYREITIGE-------VKEYLAERGIPV 253 (254)
T ss_pred hCCCCCHHH-------HHHHHHHCCCcc
Confidence 777776543 456677888875
No 417
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=45.36 E-value=2.5e+02 Score=29.14 Aligned_cols=117 Identities=13% Similarity=0.145 Sum_probs=70.6
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+..|.|+.+. .|..... ..+...-..|++.+... + +..++.+...+++++- .+|..+
T Consensus 85 lA~~a~~~G~~~~iv-----vp~~~~~--------~k~~~l~~~GA~Vi~~~-~-~~~~~~~~a~~~~~~~--~~~~~~- 146 (324)
T cd01563 85 LAAYAARAGIKCVVF-----LPAGKAL--------GKLAQALAYGATVLAVE-G-NFDDALRLVRELAEEN--WIYLSN- 146 (324)
T ss_pred HHHHHHHcCCceEEE-----EeCCCCH--------HHHHHHHHcCCEEEEEC-C-cHHHHHHHHHHHHHhc--CeeccC-
Confidence 446799999999885 3433323 33444445699988876 4 4446666555554442 111111
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHHhc----C------CCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKCQ---AVAIIVITCSGYSAKLVSKY----R------PQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~~---a~aIvv~T~sG~tA~~isk~----R------P~~pIiavt~~~ 471 (547)
|. .+.. .+.-..-+.|+..+++ .++||+.+-+|.++.-++++ + |...|++|.+..
T Consensus 147 ~~-------n~~~-~~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~ 214 (324)
T cd01563 147 SL-------NPYR-LEGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEG 214 (324)
T ss_pred CC-------Ccce-ecchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCC
Confidence 10 1111 1222334566766653 68999999999998877764 3 577899998753
No 418
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=45.32 E-value=1.4e+02 Score=32.33 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=69.8
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchH-HHHHHHHHHHHHHhhhhhhhHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQA-HHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta-~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
+...|+.+|.++.+. .|..+.. ..+...-..||+.++.. ...- ..+++...+++++-...++-.+
T Consensus 126 lA~~a~~~G~~~~iv-----vp~~~~~--------~k~~~lr~~GA~Vi~~~-~~~~~~~~~~~a~~l~~~~~~~~~~~q 191 (368)
T PLN02556 126 LAFMAAMKGYKMILT-----MPSYTSL--------ERRVTMRAFGAELVLTD-PTKGMGGTVKKAYELLESTPDAFMLQQ 191 (368)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHHcCCEEEEEC-CCCCccHHHHHHHHHHHhcCCCCccCC
Confidence 456789999999886 4544444 44555666799998875 3211 1344433333332111111000
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCchh
Q psy6272 408 VFEDLCALACPPLDPAHSIVIACVNAALKC--QAVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLGY 472 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~ia~aav~~a~~~--~a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~~ 472 (547)
|. .+....--....+-|+..++ ..++||+-.-||.|+--++ .+.|.+.|++|-+...
T Consensus 192 -~~-------np~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~ 254 (368)
T PLN02556 192 -FS-------NPANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAES 254 (368)
T ss_pred -CC-------CHHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCC
Confidence 10 01111101223455666654 4899999999999886554 4579999999999653
No 419
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=45.31 E-value=1.3e+02 Score=30.27 Aligned_cols=101 Identities=9% Similarity=0.077 Sum_probs=57.7
Q ss_pred HHHHHHHHHcCCcEEEEcccC---------ChhhHHHHHHHHHhc-CCCceEEEE----e------cCHHHHhhHHHHHh
Q psy6272 242 KHVVDLIVREAVDIIIMSSVT---------GANSIREMRGMLEDH-VDRVLILAK----I------ETLLGMEYMDEIIM 301 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~---------sa~di~~~r~~l~~~-~~~i~Iiak----I------Et~~av~nldeIl~ 301 (547)
.+.++.+.+.|+|+|-+++-. +.+++.++++.+.+. +..+.+.+- . +...+++.+...++
T Consensus 13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~ 92 (279)
T cd00019 13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIE 92 (279)
T ss_pred HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHH
Confidence 456889999999999765321 458899999999877 434333321 1 12334555555555
Q ss_pred hc-----CEEEEcCCcccc---cCChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 302 ES-----DGVVLNRIQLAV---ATSVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 302 ~~-----DgImIargDLg~---e~~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
.+ +.+.+-+|-... +-..+.+...-+++...+.++|..+.+
T Consensus 93 ~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 93 RCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 53 566554443221 111133444455566666666766555
No 420
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase.
Probab=45.24 E-value=1.1e+02 Score=32.88 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=53.0
Q ss_pred HHHHHHHhcCCCceEEE---EecCHHHHhh----HHHHHhh-c-CEEEEcCCcccc------------------cCCh-H
Q psy6272 269 EMRGMLEDHVDRVLILA---KIETLLGMEY----MDEIIME-S-DGVVLNRIQLAV------------------ATSV-E 320 (547)
Q Consensus 269 ~~r~~l~~~~~~i~Iia---kIEt~~av~n----ldeIl~~-~-DgImIargDLg~------------------e~~~-e 320 (547)
++++.|...++++.+|+ -||++++... |.++... . +.+++=|+.+-= +... +
T Consensus 37 ~i~~Il~g~d~rllvIvGPCSIhd~~~a~eyA~rLk~l~~~~~d~l~ivmR~y~eKPRTt~GWKGli~DP~ld~sf~i~~ 116 (344)
T TIGR00034 37 EIADIIAGKDDRLLVVIGPCSIHDPEAAIEYATRLKALREELKDDLEIVMRVYFEKPRTTVGWKGLINDPDLNGSFRINH 116 (344)
T ss_pred HHHHHhcCCCCCeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhcceEEEEEeccccCCCccccccccCCCCcCCCCCHHH
Confidence 44556665667777777 5888777633 3333222 2 345565654321 1111 3
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhC
Q psy6272 321 VTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDG 373 (547)
Q Consensus 321 ~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g 373 (547)
-+..+.+-.++ ..+.|.|+. |.+| +|.-.++ +.|+..+..-|
T Consensus 117 GL~~~R~ll~~-i~~~GlPva--tE~l-d~~~~~y-------~~Dlisw~aIG 158 (344)
T TIGR00034 117 GLRIARKLLLD-LVNLGLPIA--GEFL-DMISPQY-------LADLFSWGAIG 158 (344)
T ss_pred HHHHHHHHHHH-HHHhCCCeE--EEec-CcCcHHH-------HHHHHhhcccc
Confidence 35555554444 578999987 6888 5554444 47776666556
No 421
>PRK09289 riboflavin synthase subunit alpha; Provisional
Probab=45.17 E-value=1.3e+02 Score=29.75 Aligned_cols=77 Identities=17% Similarity=0.266 Sum_probs=0.0
Q ss_pred EEecCCEEEEeecccccc----------------------CCCccEEEecCC-CcccccCCCCEEEEeceeEEEEEEEeC
Q psy6272 150 EIAQGANIVLTANQLIET----------------------KGTVKRLFVDSM-ELPKRVIPDDIVYIDRNIKLKVVEKEN 206 (547)
Q Consensus 150 ~L~~G~~v~lt~~~~~~~----------------------~~~~~~i~v~~~-~~~~~v~~Gd~I~idD~I~l~V~~v~~ 206 (547)
.++.|+.|-|-..-.+.+ .++...+.+..| .+.+.+.+|+.|-+|- ++|.|.++++
T Consensus 74 ~l~~G~~VNLEra~~~~~~~gGHm~tGhVd~~g~I~~i~~~~~~~~~~i~~~~~~~~~l~~kgSIavdG-vsLTV~~~~~ 152 (194)
T PRK09289 74 DLKVGDRVNLERALRLGDRLGGHIVSGHVDGTGEIVSIEKEGNSVEFRFKAPAELAKYIVEKGSIAVDG-VSLTVNEVDG 152 (194)
T ss_pred hccCCCEEEEeEcccCCCcccceeEEEEEEEEEEEEEEEECCCcEEEEEECChHHhcccccCCEEEEcc-EEEEEEEEcC
Q ss_pred CeEEEEEE-------eCcEeCCCceeee
Q psy6272 207 NDVHCTVI-------RGGKLMDNQLVTV 227 (547)
Q Consensus 207 ~~v~~~V~-------~gG~L~s~Kginl 227 (547)
+.+..-+. +=|.++.+.-||+
T Consensus 153 ~~f~v~lipeTl~~T~l~~~k~G~~VNl 180 (194)
T PRK09289 153 DRFSVNLIPHTLENTTLGEKKVGDRVNL 180 (194)
T ss_pred CEEEEEEeHHHHhhCccccCCCCCEEEE
No 422
>PRK00568 carbon storage regulator; Provisional
Probab=44.90 E-value=48 Score=28.08 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=24.8
Q ss_pred cCCCCEEEEeceeEEEEEEEeCCeEEEEE
Q psy6272 185 VIPDDIVYIDRNIKLKVVEKENNDVHCTV 213 (547)
Q Consensus 185 v~~Gd~I~idD~I~l~V~~v~~~~v~~~V 213 (547)
=++|+.|.|+|.|..+|.+++++.|..=+
T Consensus 6 RK~gEsI~Igd~I~I~Vl~i~g~~VrlGI 34 (76)
T PRK00568 6 RKVNEGIVIDDNIHIKVISIDRGSVRLGF 34 (76)
T ss_pred eeCCCeEEeCCCeEEEEEEEcCCEEEEEE
Confidence 37899999999999999999999876533
No 423
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=44.82 E-value=42 Score=34.74 Aligned_cols=47 Identities=21% Similarity=0.276 Sum_probs=37.9
Q ss_pred HHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 291 LGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 291 ~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
.+.+-.+|+.+.+|+++|.=|=|.- +-....+..++.+|+.|+|+++
T Consensus 44 ~~~eE~~e~~kia~AL~INIGTL~~-----~~~~~m~~A~~~An~~~~PvvL 90 (265)
T COG2145 44 DAPEEVEEFAKIADALLINIGTLSA-----ERIQAMRAAIKAANESGKPVVL 90 (265)
T ss_pred cCHHHHHHHHHhccceEEeeccCCh-----HHHHHHHHHHHHHHhcCCCEEe
Confidence 4667788999999999999888773 3344555688999999999997
No 424
>PRK01712 carbon storage regulator; Provisional
Probab=44.71 E-value=57 Score=26.77 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=25.2
Q ss_pred ccCCCCEEEEeceeEEEEEEEeCCeEEEEE
Q psy6272 184 RVIPDDIVYIDRNIKLKVVEKENNDVHCTV 213 (547)
Q Consensus 184 ~v~~Gd~I~idD~I~l~V~~v~~~~v~~~V 213 (547)
.-++|+.|.|+|.|..+|.++.++.|..=+
T Consensus 5 tRk~gE~I~Igd~I~I~V~~i~~~~VrlGI 34 (64)
T PRK01712 5 TRKVGESLMIGDDIEVTVLGVKGNQVRIGI 34 (64)
T ss_pred EccCCCEEEeCCCEEEEEEEEeCCEEEEEE
Confidence 348999999999999999999998876544
No 425
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=44.67 E-value=3.8e+02 Score=27.84 Aligned_cols=139 Identities=17% Similarity=0.127 Sum_probs=71.0
Q ss_pred CChhhHHHH-HHHHHcCCcEEEE-cccCC-----hhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCE--E
Q psy6272 237 IADRDKHVV-DLIVREAVDIIIM-SSVTG-----ANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDG--V 306 (547)
Q Consensus 237 lt~~D~~di-~~~~~~g~d~I~~-sfV~s-----a~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~Dg--I 306 (547)
++..++..| +...+.|++.|=+ ||+.. ..|..++...+... ....+.+-.-+.++++.. ++. .|. +
T Consensus 23 ~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~-~~~~~~~l~~~~~~ie~A---~~~g~~~v~i 98 (287)
T PRK05692 23 IPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRR-PGVTYAALTPNLKGLEAA---LAAGADEVAV 98 (287)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhcc-CCCeEEEEecCHHHHHHH---HHcCCCEEEE
Confidence 455665554 5667799999977 45532 12223333333321 234444433344444332 222 353 4
Q ss_pred EEcCCcc----cccCChHHHHHHHHHHHHHHHHcCCcEEE--Ec-CCCCCCCcccccccCccchhhHH-HHHHhCccEEe
Q psy6272 307 VLNRIQL----AVATSVEVTFLAQKMIAARCNKQGKPFLV--VG-DILPDHNVEEYSDVSIGDMNDVN-SIVQDGADVVV 378 (547)
Q Consensus 307 mIargDL----g~e~~~e~v~~~qk~ii~~c~~~gKPvi~--aT-q~Le~PtraE~~~~~~~~~~Dv~-nav~~g~D~vm 378 (547)
++.-.|+ -.....++.....+.+++.++++|..|.. ++ --.+.-+|... ..+-+++ .+...|+|.+.
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~d~i~ 173 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPP-----EAVADVAERLFALGCYEIS 173 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCH-----HHHHHHHHHHHHcCCcEEE
Confidence 4443333 22233455565667799999999998742 11 00011112211 1124444 55677999999
Q ss_pred eCCcchHH
Q psy6272 379 LTQSEQAH 386 (547)
Q Consensus 379 Lsk~Eta~ 386 (547)
|. +|.=
T Consensus 174 l~--DT~G 179 (287)
T PRK05692 174 LG--DTIG 179 (287)
T ss_pred ec--cccC
Confidence 97 6554
No 426
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=44.58 E-value=3.5e+02 Score=29.29 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=19.6
Q ss_pred CCCChhhHHHH--------HHHHHcCCcEEEEcc
Q psy6272 235 PVIADRDKHVV--------DLIVREAVDIIIMSS 260 (547)
Q Consensus 235 p~lt~~D~~di--------~~~~~~g~d~I~~sf 260 (547)
..||..|++.+ ++|.+.|+|+|-+..
T Consensus 138 ~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ 171 (382)
T cd02931 138 RELTTEEVETFVGKFGESAVIAKEAGFDGVEIHA 171 (382)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEec
Confidence 45888888777 477889999995543
No 427
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=44.58 E-value=2.7e+02 Score=28.25 Aligned_cols=64 Identities=14% Similarity=0.263 Sum_probs=54.2
Q ss_pred HHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEE
Q psy6272 242 KHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVL 308 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImI 308 (547)
...+..-++.|+|+|.+- ++....+.++-+++.+.|....+.-+=+|+ ++.++.++...|.|++
T Consensus 74 ~~~i~~fa~agad~It~H-~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp--~~~i~~~l~~vD~Vll 137 (220)
T COG0036 74 DRYIEAFAKAGADIITFH-AEATEHIHRTIQLIKELGVKAGLVLNPATP--LEALEPVLDDVDLVLL 137 (220)
T ss_pred HHHHHHHHHhCCCEEEEE-eccCcCHHHHHHHHHHcCCeEEEEECCCCC--HHHHHHHHhhCCEEEE
Confidence 456777889999998885 567789999999999999888888888875 6778999999998886
No 428
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=44.57 E-value=88 Score=33.52 Aligned_cols=67 Identities=9% Similarity=0.081 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
-++.+++.|.+.|..+.|-+.-+... -+|..++++-.|.|+-+-.++ ..+..+-+.|+++++|++.+
T Consensus 83 Ka~~a~~~l~~~np~v~v~~~~~~i~-~~~~~~~~~~~DvVvd~~d~~----------~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 83 KAESAREAMLALNPDVKVTVSVRRLT-WSNALDELRDADVILDGSDNF----------DTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred HHHHHHHHHHHHCCCcEEEEEEeecC-HHHHHHHHhCCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 35556677777888887766444333 357888888899888885443 23344778999999998876
No 429
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=44.39 E-value=68 Score=32.43 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=40.7
Q ss_pred HHHhhHHHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHH
Q psy6272 291 LGMEYMDEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSI 369 (547)
Q Consensus 291 ~av~nldeIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~na 369 (547)
...+.++.+.+. .|+|||| |=+++. .+.+ .+.+++++++.+|++. -|.-.+.
T Consensus 15 ~~~~~~~~~~~~gtdai~vG-GS~~vt--~~~~----~~~v~~ik~~~lPvil------fp~~~~~-------------- 67 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIG-GSQGVT--YEKT----DTLIEALRRYGLPIIL------FPSNPTN-------------- 67 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEc-CCCccc--HHHH----HHHHHHHhccCCCEEE------eCCCccc--------------
Confidence 345566677766 6999999 544432 2233 3456667788899997 4443333
Q ss_pred HHhCccEEeeC
Q psy6272 370 VQDGADVVVLT 380 (547)
Q Consensus 370 v~~g~D~vmLs 380 (547)
+..++|++++-
T Consensus 68 i~~~aDa~l~~ 78 (223)
T TIGR01768 68 VSRDADALFFP 78 (223)
T ss_pred cCcCCCEEEEE
Confidence 44789998874
No 430
>PRK06110 hypothetical protein; Provisional
Probab=44.39 E-value=2.5e+02 Score=29.43 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=70.5
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+++|.|+.+.. |....- .-....-..|++.+... ++..++++...+..++ +..+|..+
T Consensus 85 lA~~a~~~G~~~~ivv-----p~~~~~--------~k~~~i~~~GA~V~~~~--~~~~~~~~~a~~~~~~-~~~~~~~~- 147 (322)
T PRK06110 85 VAFAARRHGLAATIVV-----PHGNSV--------EKNAAMRALGAELIEHG--EDFQAAREEAARLAAE-RGLHMVPS- 147 (322)
T ss_pred HHHHHHHcCCCEEEEE-----cCCCCH--------HHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHh-cCCEEcCC-
Confidence 5568999999998863 332212 22234455799988764 4445666655554443 11111111
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHH----hcCCCCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-QAVAIIVITCSGYSAKLVS----KYRPQCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-~a~aIvv~T~sG~tA~~is----k~RP~~pIiavt~~~ 471 (547)
|+ + ...+.-...+.|+..++ +.++||+..-+|.+..-++ .++|...|++|-+..
T Consensus 148 ~~--------~-~~~~G~~t~~~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~ 206 (322)
T PRK06110 148 FH--------P-DLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAH 206 (322)
T ss_pred CC--------C-hHHhccchHHHHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 10 1 11222334456666666 4689999999999877665 468999999999853
No 431
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=44.27 E-value=2.8e+02 Score=28.67 Aligned_cols=45 Identities=16% Similarity=0.133 Sum_probs=33.9
Q ss_pred HHHHHHHHHhc-----CCcEEEEEcCCchHHHHHHh----cCCCCCEEEEeCch
Q psy6272 427 VIACVNAALKC-----QAVAIIVITCSGYSAKLVSK----YRPQCPILAVSSLG 471 (547)
Q Consensus 427 a~aav~~a~~~-----~a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~~~ 471 (547)
...+.|+..++ ..+.||+..-||.|+--+++ ++|...|++|-+..
T Consensus 158 ~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~ 211 (307)
T cd06449 158 VGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASA 211 (307)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 34455555544 47899999999999887765 47999999999853
No 432
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=44.12 E-value=48 Score=32.70 Aligned_cols=42 Identities=26% Similarity=0.332 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHHHHHHh
Q psy6272 66 NSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEV 108 (547)
Q Consensus 66 ~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~a~~~~ 108 (547)
.-.+.|.+|+++|++.+||. -..+.++-.+ +++..|++....
T Consensus 157 ~l~~~l~~L~~~Gv~~~rI~~r~~~~~~~~~-iv~~Y~~~l~~~ 199 (233)
T PF01136_consen 157 CLLDELPELKDAGVDSFRIDGRTESPEYIEE-IVKAYREALDNP 199 (233)
T ss_pred hHHHHHHHHHHcCCCEEEEcCccCCHHHHHH-HHHHHHHHHHHH
Confidence 45778999999999999999 7777777877 999999987764
No 433
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=44.06 E-value=95 Score=33.92 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=57.7
Q ss_pred hHHHHHHHHHcCCcEEEEcccC---------ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEE
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVT---------GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVV 307 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~---------sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgIm 307 (547)
+.+|.+.++++|+|+|.+|.-. +.+-+.++++.+ ++++.|++- -|+.+=.+|+++ +|+++
T Consensus 263 ~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~---~~~~~vi~d----GGIr~G~Dv~KALaLGA~~v~ 335 (383)
T cd03332 263 HPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAV---GDRLTVLFD----SGVRTGADIMKALALGAKAVL 335 (383)
T ss_pred CHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHh---cCCCeEEEe----CCcCcHHHHHHHHHcCCCEEE
Confidence 4567889999999999999542 233444444444 446777763 577777777666 79999
Q ss_pred EcCCcc-cc-cCCh---H-HHHHHHHHHHHHHHHcCCc
Q psy6272 308 LNRIQL-AV-ATSV---E-VTFLAQKMIAARCNKQGKP 339 (547)
Q Consensus 308 IargDL-g~-e~~~---e-~v~~~qk~ii~~c~~~gKP 339 (547)
+||.=| ++ .-|. + .+...+.++-......|+.
T Consensus 336 iGr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~ 373 (383)
T cd03332 336 IGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIR 373 (383)
T ss_pred EcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999877 21 1222 2 2334555555555555654
No 434
>PRK09989 hypothetical protein; Provisional
Probab=43.91 E-value=3.1e+02 Score=27.32 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=37.2
Q ss_pred CceeeeCCCCcCCCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceE
Q psy6272 222 NQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLI 283 (547)
Q Consensus 222 ~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~I 283 (547)
++.+|+--.-.++| -.+.++.+.++|+|+|=+.+... .+.+++++.+++.|-.+..
T Consensus 3 ~~~~~~~~~~~~~~-----l~~~l~~~~~~Gfd~VEl~~~~~-~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 3 RFAANLSMMFTEVP-----FIERFAAARKAGFDAVEFLFPYD-YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred ceeeehhhhhcCCC-----HHHHHHHHHHcCCCEEEECCccc-CCHHHHHHHHHHcCCcEEE
Confidence 44555543333332 24668999999999999876433 5678888889877655443
No 435
>PRK14057 epimerase; Provisional
Probab=43.57 E-value=3.9e+02 Score=27.62 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=50.0
Q ss_pred ChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCC---------CceEEEEecCHHHHhhHHHHHhhcCEEEE
Q psy6272 238 ADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVD---------RVLILAKIETLLGMEYMDEIIMESDGVVL 308 (547)
Q Consensus 238 t~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~---------~i~IiakIEt~~av~nldeIl~~~DgImI 308 (547)
.+.=...++.-.+.|+|+|.+- ++...++.+.-+.+.+.|. ...+..+-+| -++.++.++...|.|+|
T Consensus 84 V~~P~~~i~~~~~aGad~It~H-~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~T--p~e~i~~~l~~vD~VLv 160 (254)
T PRK14057 84 VADQWTAAQACVKAGAHCITLQ-AEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPAT--PLDVIIPILSDVEVIQL 160 (254)
T ss_pred eCCHHHHHHHHHHhCCCEEEEe-eccccCHHHHHHHHHHcCCCcccccccceeEEEECCCC--CHHHHHHHHHhCCEEEE
Confidence 3333446777788999988775 5666677777777777764 3666667776 67889999999998876
No 436
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=43.53 E-value=1.6e+02 Score=30.51 Aligned_cols=108 Identities=13% Similarity=0.234 Sum_probs=70.4
Q ss_pred HHHHHcCCcEEEEccc---------C--ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCccc
Q psy6272 246 DLIVREAVDIIIMSSV---------T--GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLA 314 (547)
Q Consensus 246 ~~~~~~g~d~I~~sfV---------~--sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg 314 (547)
+...+.|+.++...+= + ..+.++.++++..+. .+.+++-+-....++-+.+. +|.+-||-+++.
T Consensus 48 ~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~--Gl~~~te~~d~~~~~~l~~~---vd~~kIga~~~~ 122 (266)
T PRK13398 48 EKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKY--NLPVVTEVMDTRDVEEVADY---ADMLQIGSRNMQ 122 (266)
T ss_pred HHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHc--CCCEEEeeCChhhHHHHHHh---CCEEEECccccc
Confidence 4455577776665522 1 245677788887653 57888888888877777654 799999977765
Q ss_pred ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHH-hCccEEee
Q psy6272 315 VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQ-DGADVVVL 379 (547)
Q Consensus 315 ~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~-~g~D~vmL 379 (547)
- ..++..+-+.||||++.|.|. .+-.|+ -+++..+. .|-.-++|
T Consensus 123 n-----------~~LL~~~a~~gkPV~lk~G~~--~s~~e~--------~~A~e~i~~~Gn~~i~L 167 (266)
T PRK13398 123 N-----------FELLKEVGKTKKPILLKRGMS--ATLEEW--------LYAAEYIMSEGNENVVL 167 (266)
T ss_pred C-----------HHHHHHHhcCCCcEEEeCCCC--CCHHHH--------HHHHHHHHhcCCCeEEE
Confidence 3 235666678899999998863 344455 55554444 35533333
No 437
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=43.52 E-value=1.9e+02 Score=31.67 Aligned_cols=89 Identities=9% Similarity=0.051 Sum_probs=55.6
Q ss_pred CChhhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhc--CCCCCEEEEeCchhccc--cccccccceEEeecCCCCCC
Q psy6272 420 LDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKY--RPQCPILAVSSLGYVCR--HLNVYRNIRPLHYIRNPQAD 495 (547)
Q Consensus 420 ~~~~~~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk~--RP~~pIiavt~~~~~ar--~l~l~~GV~p~~~~~~~~~~ 495 (547)
.+-.+.-|..++..+.+.+++.|++.| ||++++-+|.| +-..|...++|.....+ ......|+.-+.+.
T Consensus 98 GSFKdRga~~~i~~a~~~g~~~Vv~aS-sGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~------ 170 (398)
T TIGR03844 98 CSFKELEALPTMQRLKERGGKTLVVAS-AGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVD------ 170 (398)
T ss_pred cccHHHHHHHHHHHHHHcCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECC------
Confidence 444566677777777777777666665 99999887765 44567777777642222 11256676655543
Q ss_pred CCCCHHHHHHHHHHHHHHcCCC
Q psy6272 496 WSMDVDCRVQFAIQHGMEIGII 517 (547)
Q Consensus 496 ~~~d~d~~I~~a~~~~k~~g~~ 517 (547)
.+.++..+.+.+.+++.|+.
T Consensus 171 --g~~d~a~~~a~~~a~~~g~~ 190 (398)
T TIGR03844 171 --GDYTDAIALADRIATLPGFV 190 (398)
T ss_pred --CCHHHHHHHHHHHHHhCCcc
Confidence 23455566666666666653
No 438
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=43.46 E-value=3.7e+02 Score=28.14 Aligned_cols=115 Identities=10% Similarity=0.168 Sum_probs=70.8
Q ss_pred HHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHH
Q psy6272 244 VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTF 323 (547)
Q Consensus 244 di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~ 323 (547)
.++.|.+.|. .|..-.+.+.+.++.+-+..++.+ ..+|.++ +++.+. -.|.+.
T Consensus 9 ~l~~A~~~~y-aV~AfN~~n~e~~~avi~AAee~~--sPvIiq~---------------------~~~~~~-~~g~~~-- 61 (284)
T PRK12737 9 MLKKAQAEGY-AVPAFNIHNLETLQVVVETAAELR--SPVILAG---------------------TPGTFS-YAGTDY-- 61 (284)
T ss_pred HHHHHHHcCc-eEEEEEeCCHHHHHHHHHHHHHhC--CCEEEEc---------------------CccHHh-hCCHHH--
Confidence 3666777665 566666778888888877776653 3455453 222221 123333
Q ss_pred HHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH--HHHHHHHHHHHHhh
Q psy6272 324 LAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH--HRVDILKEILKKTE 400 (547)
Q Consensus 324 ~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~--eaV~~m~~I~~~aE 400 (547)
+-..+...|+++..||.+.. +... .. .++..|+..|++.||.- +-+.- |-|+.-+++++.+.
T Consensus 62 -~~~~~~~~a~~~~VPValHL----DH~~-~~--------e~i~~ai~~GftSVMiD-gS~lp~eeNi~~T~~vv~~Ah 125 (284)
T PRK12737 62 -IVAIAEVAARKYNIPLALHL----DHHE-DL--------DDIKKKVRAGIRSVMID-GSHLSFEENIAIVKEVVEFCH 125 (284)
T ss_pred -HHHHHHHHHHHCCCCEEEEC----CCCC-CH--------HHHHHHHHcCCCeEEec-CCCCCHHHHHHHHHHHHHHHH
Confidence 33446677888999999842 2221 24 77889999999999997 54433 55555555554444
No 439
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=43.45 E-value=2.5e+02 Score=27.37 Aligned_cols=76 Identities=16% Similarity=0.241 Sum_probs=42.9
Q ss_pred hhHHHHHHhCccEEeeCCcchHH-------HHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCCCChhhHHHHHHHHHHHh
Q psy6272 364 NDVNSIVQDGADVVVLTQSEQAH-------HRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALK 436 (547)
Q Consensus 364 ~Dv~nav~~g~D~vmLsk~Eta~-------eaV~~m~~I~~~aE~~~~~~~~f~~~~~~~~~~~~~~~~ia~aav~~a~~ 436 (547)
..+-.|+.+|||.+-+. -.... +..+.+..++..+.. .-.+-.++ ....+ +..-..++++|.+
T Consensus 73 ~eve~A~~~GAdevdvv-~~~g~~~~~~~~~~~~ei~~v~~~~~g-~~lkvI~e------~~~l~--~~~i~~a~ria~e 142 (203)
T cd00959 73 AEAREAIADGADEIDMV-INIGALKSGDYEAVYEEIAAVVEACGG-APLKVILE------TGLLT--DEEIIKACEIAIE 142 (203)
T ss_pred HHHHHHHHcCCCEEEEe-ecHHHHhCCCHHHHHHHHHHHHHhcCC-CeEEEEEe------cCCCC--HHHHHHHHHHHHH
Confidence 67789999999998774 33221 344555555554431 10000010 11122 3345666788999
Q ss_pred cCCcEEEEEcCCchH
Q psy6272 437 CQAVAIIVITCSGYS 451 (547)
Q Consensus 437 ~~a~aIvv~T~sG~t 451 (547)
++|+ ++=|.||.+
T Consensus 143 ~GaD--~IKTsTG~~ 155 (203)
T cd00959 143 AGAD--FIKTSTGFG 155 (203)
T ss_pred hCCC--EEEcCCCCC
Confidence 9999 556667765
No 440
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=43.45 E-value=72 Score=31.34 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCcEEEEcc--------cCChhhHHHHHHHHHhcCCCceEEE--EecCHHHHhhHHHHHhh-cCEEEEcC
Q psy6272 242 KHVVDLIVREAVDIIIMSS--------VTGANSIREMRGMLEDHVDRVLILA--KIETLLGMEYMDEIIME-SDGVVLNR 310 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf--------V~sa~di~~~r~~l~~~~~~i~Iia--kIEt~~av~nldeIl~~-~DgImIar 310 (547)
.++++.+.+.|+|+|.++. .....+...+++..+.. ++.+++ -|-|+ +++.++++. +||+++|+
T Consensus 129 ~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~---~~~~~~l~~GadgV~iGs 203 (221)
T PRK01130 129 LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTP---EQAKKALELGAHAVVVGG 203 (221)
T ss_pred HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCH---HHHHHHHHCCCCEEEEch
Confidence 3456789999999997631 12233445555544332 355555 33333 566667766 89999997
Q ss_pred C
Q psy6272 311 I 311 (547)
Q Consensus 311 g 311 (547)
.
T Consensus 204 a 204 (221)
T PRK01130 204 A 204 (221)
T ss_pred H
Confidence 6
No 441
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=43.26 E-value=38 Score=38.23 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=39.1
Q ss_pred CceEEEecCCCCCCHHHHHHHHHhCCcEEeec-cCCCHHHHHHHHHHHHHH
Q psy6272 54 LTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKL 103 (547)
Q Consensus 54 ~tkIi~TiGpas~~~e~l~~li~aGm~v~RiN-sHg~~e~~~~~~i~~ir~ 103 (547)
+-.+.+.+|+. ...+.++.|+++|+|+.=+. |||..+...+ +|+.+|+
T Consensus 231 rL~V~~av~~~-~~~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~-~i~~ir~ 279 (502)
T PRK07107 231 RYVVGAGINTR-DYAERVPALVEAGADVLCIDSSEGYSEWQKR-TLDWIRE 279 (502)
T ss_pred CeeeeeccChh-hHHHHHHHHHHhCCCeEeecCcccccHHHHH-HHHHHHH
Confidence 45566777774 56799999999999999999 9998777777 7777776
No 442
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=43.11 E-value=78 Score=31.10 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCcEEEEccc--------CChhhHHHHHHHHHhcCCCceEEE--EecCHHHHhhHHHHHhh-cCEEEEcCC
Q psy6272 243 HVVDLIVREAVDIIIMSSV--------TGANSIREMRGMLEDHVDRVLILA--KIETLLGMEYMDEIIME-SDGVVLNRI 311 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~sfV--------~sa~di~~~r~~l~~~~~~i~Iia--kIEt~~av~nldeIl~~-~DgImIarg 311 (547)
+++..+.+.|+|+|.+... ....+...++.+.+.. ++.+++ -|-+. +++.+.++. +||+++|++
T Consensus 134 ~ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~---~~~~~~l~~GadgV~vGsa 208 (219)
T cd04729 134 EEALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSP---EQAAKALELGADAVVVGSA 208 (219)
T ss_pred HHHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCH---HHHHHHHHCCCCEEEEchH
Confidence 4568888999999875321 1123344444444332 456665 23332 566666666 899999964
No 443
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=43.07 E-value=1.9e+02 Score=30.81 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=51.3
Q ss_pred HHHHHHcCCcEEEEcccCChhh---------------HHHHH---HHHHhcCCCceEEEEecCHHHHhhHHH----HHhh
Q psy6272 245 VDLIVREAVDIIIMSSVTGANS---------------IREMR---GMLEDHVDRVLILAKIETLLGMEYMDE----IIME 302 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~d---------------i~~~r---~~l~~~~~~i~IiakIEt~~av~nlde----Il~~ 302 (547)
++.+.+.|+|+|++=-+.+-+. +.-++ +++.+.+.+..||.+ .|.+=++. +...
T Consensus 153 l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~N----nG~eil~~~~g~~~~~ 228 (315)
T TIGR01370 153 LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQ----NGEELLRDDHGGLAAT 228 (315)
T ss_pred HHHHHHcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEec----Cchhhhhccccchhhh
Confidence 5677889999999987766432 22222 233555667767653 44444443 4445
Q ss_pred cCEEEEcC---CcccccCChHHHHHHHHHHHHHHHHcCCcEEE
Q psy6272 303 SDGVVLNR---IQLAVATSVEVTFLAQKMIAARCNKQGKPFLV 342 (547)
Q Consensus 303 ~DgImIar---gDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~ 342 (547)
.|||..-- ...+ ..+-++....++ -+.+++++||||++
T Consensus 229 idgV~~Eslf~~~~~-~~~e~dr~~~l~-~L~~~~~~G~~Vl~ 269 (315)
T TIGR01370 229 VSGWAVEELFYYAAN-RPTEAERQRRLL-ALYRLWQQGKFVLT 269 (315)
T ss_pred ceEEEecceEEcCCC-CCCHHHHHHHHH-HHHHHHHCCCcEEE
Confidence 56665432 1111 223333333333 35567788999996
No 444
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=43.04 E-value=53 Score=36.47 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=66.4
Q ss_pred cCCcEEEEcccCChhhHHHHHHHHHhc---------C------------CCceEEEEecCHHHHhhHHHHHhhc------
Q psy6272 251 EAVDIIIMSSVTGANSIREMRGMLEDH---------V------------DRVLILAKIETLLGMEYMDEIIMES------ 303 (547)
Q Consensus 251 ~g~d~I~~sfV~sa~di~~~r~~l~~~---------~------------~~i~IiakIEt~~av~nldeIl~~~------ 303 (547)
.++--|++|+..|++++..+.++.... | +.|.+|.-+|+.+++-+...|....
T Consensus 123 ~pIfEVIlPMTts~~el~~v~~~y~~~v~~~~~~~~~~~vk~~vge~~P~~IeviPl~e~~~~ll~a~~i~~~y~~g~~~ 202 (488)
T COG1892 123 APIFEVILPMTTSVEELLRVHEYYRDFVRGRLELEDGVTVKEWVGEFIPKLIEVIPLFEDRESLLKAALIVGEYAEGRDP 202 (488)
T ss_pred ccceeEecccCCCHHHHHHHHHHHHHHHcchhHhhcCchHhhhhccccHHHHhhhHhHhhHHHHHHHHHHHHHHHhcCCc
Confidence 356679999999999999987765221 1 1345667788888888887777662
Q ss_pred --CEEEEcCCcccccCChH----HHHHHHHHHHHHHHHcCCcEE
Q psy6272 304 --DGVVLNRIQLAVATSVE----VTFLAQKMIAARCNKQGKPFL 341 (547)
Q Consensus 304 --DgImIargDLg~e~~~e----~v~~~qk~ii~~c~~~gKPvi 341 (547)
=-||+||.|-++..|.- -+..|-.++-+.-...|.|+.
T Consensus 203 e~~RVFLarSDpAmnyG~laA~l~~K~AL~~l~el~ee~~~~i~ 246 (488)
T COG1892 203 EYLRVFLARSDPAMNYGHLAAVLAVKKALSELSELSEELGVPIY 246 (488)
T ss_pred hhheeeeecCchhhccchHHHHHHHHHHHHHHHHHHhhcCCccc
Confidence 27999999999999983 334455556677777798864
No 445
>KOG0538|consensus
Probab=43.01 E-value=79 Score=33.70 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCcEEEEcccC------ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCC
Q psy6272 243 HVVDLIVREAVDIIIMSSVT------GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRI 311 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~sfV~------sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIarg 311 (547)
+|...|+++|+++|++|.=- .++.|..+.+.+..-+.++.++-- -||++=-+|+++ +-||||||-
T Consensus 235 eDA~~Ave~G~~GIIVSNHGgRQlD~vpAtI~~L~Evv~aV~~ri~V~lD----GGVR~G~DVlKALALGAk~VfiGRP 309 (363)
T KOG0538|consen 235 EDARKAVEAGVAGIIVSNHGGRQLDYVPATIEALPEVVKAVEGRIPVFLD----GGVRRGTDVLKALALGAKGVFIGRP 309 (363)
T ss_pred HHHHHHHHhCCceEEEeCCCccccCcccchHHHHHHHHHHhcCceEEEEe----cCcccchHHHHHHhcccceEEecCc
Confidence 44578899999999998632 234444555544444455555542 344444444444 466676663
No 446
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=42.91 E-value=3e+02 Score=29.81 Aligned_cols=126 Identities=13% Similarity=0.094 Sum_probs=73.1
Q ss_pred HHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHH
Q psy6272 328 MIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 328 ~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
.+...|+.+|.|+.+. .|..+-. .-+.+.-..|++.++.. + +-.++++.+.+++++-...+-+..
T Consensus 108 a~A~~Aa~~G~~~~I~-----vP~~~~~--------~k~~~i~~~GAeVi~v~-~-~~~~a~~~a~~~~~~~g~~~~~~~ 172 (376)
T TIGR01747 108 GVAWAAQQLGQKAVVY-----MPKGSAQ--------ERVENILNLGAECTITD-M-NYDDTVRLAMQMAQQHGWVVVQDT 172 (376)
T ss_pred HHHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHhCCCEEEEEC-C-CHHHHHHHHHHHHHhcCcEEeccc
Confidence 3667899999999886 4544333 45566678899988886 4 444677777666544221110000
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHHhc------CCcEEEEEcCCchHHHHHHh-----cCCCC-CEEEEeCch
Q psy6272 408 VFEDLCALACPPLDPAHSIVIACVNAALKC------QAVAIIVITCSGYSAKLVSK-----YRPQC-PILAVSSLG 471 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~ia~aav~~a~~~------~a~aIvv~T~sG~tA~~isk-----~RP~~-pIiavt~~~ 471 (547)
.++.. ...+....+--...+.|+..++ ..++||+.+-+|.++.-+++ ++|.. .|++|-+..
T Consensus 173 ~~~~~---~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~g 245 (376)
T TIGR01747 173 AWEGY---EKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDK 245 (376)
T ss_pred ccccc---ccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence 00000 0001111222334555666665 36889999999988876654 24655 588888853
No 447
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=42.85 E-value=4.2e+02 Score=27.76 Aligned_cols=133 Identities=9% Similarity=0.141 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCcEEEEc---------------ccCChhhHHHHHHHHHhc-CCCceEEEEecCH------HHHhhHHHHH
Q psy6272 243 HVVDLIVREAVDIIIMS---------------SVTGANSIREMRGMLEDH-VDRVLILAKIETL------LGMEYMDEII 300 (547)
Q Consensus 243 ~di~~~~~~g~d~I~~s---------------fV~sa~di~~~r~~l~~~-~~~i~IiakIEt~------~av~nldeIl 300 (547)
..++...+.|+.+|.+= .|...+-+.+++...... +.++.|+|..+.. ++++....-.
T Consensus 92 ~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~ 171 (285)
T TIGR02317 92 RTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYV 171 (285)
T ss_pred HHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHH
Confidence 34566667777777661 233334566666665543 3568999999986 3344443333
Q ss_pred hh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEee
Q psy6272 301 ME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVL 379 (547)
Q Consensus 301 ~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmL 379 (547)
++ +|+||+- |-- ..++ +-+.|++..+|+.+ +|++.+.- .. -++...-..|+.-+.+
T Consensus 172 ~AGAD~vfi~-g~~----~~e~-------i~~~~~~i~~Pl~~--n~~~~~~~-p~--------~s~~eL~~lGv~~v~~ 228 (285)
T TIGR02317 172 EAGADMIFPE-ALT----SLEE-------FRQFAKAVKVPLLA--NMTEFGKT-PL--------FTADELREAGYKMVIY 228 (285)
T ss_pred HcCCCEEEeC-CCC----CHHH-------HHHHHHhcCCCEEE--EeccCCCC-CC--------CCHHHHHHcCCcEEEE
Confidence 33 6999984 311 1222 33445555689854 34431110 01 1233345569999999
Q ss_pred CCcchHHHHHHHHHHHHHHh
Q psy6272 380 TQSEQAHHRVDILKEILKKT 399 (547)
Q Consensus 380 sk~Eta~eaV~~m~~I~~~a 399 (547)
. .-...-+.+.|.+.+...
T Consensus 229 ~-~~~~~aa~~a~~~~~~~l 247 (285)
T TIGR02317 229 P-VTAFRAMNKAAEAVYNEI 247 (285)
T ss_pred c-hHHHHHHHHHHHHHHHHH
Confidence 7 444446666666665544
No 448
>TIGR00187 ribE riboflavin synthase, alpha subunit. The name ribE was selected, from among alternatives including ribB and ribC, to match the usage in EcoCyc.
Probab=42.80 E-value=67 Score=31.90 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=45.4
Q ss_pred ccEEEecCC-CcccccCCCCEEEEeceeEEEEEEEeCCeEEEEEE-------eCcEeCCCceeeeC
Q psy6272 171 VKRLFVDSM-ELPKRVIPDDIVYIDRNIKLKVVEKENNDVHCTVI-------RGGKLMDNQLVTVP 228 (547)
Q Consensus 171 ~~~i~v~~~-~~~~~v~~Gd~I~idD~I~l~V~~v~~~~v~~~V~-------~gG~L~s~Kginlp 228 (547)
...+.+..+ .+++.+++||.|-+|- ++|.|.+++++.+.+-+. +=|.++.+.-||+-
T Consensus 21 ~~~l~i~~~~~~~~~l~~G~SIAvnG-vCLTV~~i~~~~f~vdvipETl~~TtL~~l~~G~~VNLE 85 (200)
T TIGR00187 21 FISLVVNLADHMLDDLELGDSIAVNG-VCLTVTEINKNHFSVDLSPETLKRTNLGDLKVGTWVNIE 85 (200)
T ss_pred cEEEEEEeChHHhcccccCCEEEECc-EEEEEEEEcCCEEEEEEEHHHhhhcchhhCcCCCEEEEc
Confidence 345677766 6788999999999998 788999999998877763 55677788888874
No 449
>PRK08223 hypothetical protein; Validated
Probab=42.64 E-value=1.2e+02 Score=31.81 Aligned_cols=68 Identities=25% Similarity=0.277 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 267 IREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 267 i~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
++.+++.+.+.|.++.|.+-=|. -.-+|+++++.-.|.|+=+-..+. ......+-+.|+++|||++.+
T Consensus 83 ve~a~~~l~~iNP~v~V~~~~~~-l~~~n~~~ll~~~DlVvD~~D~~~--------~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 83 AEVLAEMVRDINPELEIRAFPEG-IGKENADAFLDGVDVYVDGLDFFE--------FDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred HHHHHHHHHHHCCCCEEEEEecc-cCccCHHHHHhCCCEEEECCCCCc--------HHHHHHHHHHHHHcCCCEEEE
Confidence 45555667777887776653332 224689999988898863321111 234556788999999999987
No 450
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=42.61 E-value=3.8e+02 Score=27.22 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=64.3
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHH--------------------HhhHHHHH
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLG--------------------MEYMDEII 300 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~a--------------------v~nldeIl 300 (547)
..++++..++.|++.|.+... .-++...+++..+..+++- |+.-|..+.+ .+.+....
T Consensus 85 s~~d~~~l~~~G~~~vvigs~-~~~~~~~~~~~~~~~~~~~-i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~ 162 (258)
T PRK01033 85 TLEQAKKIFSLGVEKVSINTA-ALEDPDLITEAAERFGSQS-VVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYE 162 (258)
T ss_pred CHHHHHHHHHCCCCEEEEChH-HhcCHHHHHHHHHHhCCCc-EEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHH
Confidence 346777778899999998742 1234444555554433221 2333332222 22222222
Q ss_pred hh-cCEEEEc-CCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHH-HhCccEE
Q psy6272 301 ME-SDGVVLN-RIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIV-QDGADVV 377 (547)
Q Consensus 301 ~~-~DgImIa-rgDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav-~~g~D~v 377 (547)
+. ++.+++- +.-=|..-|+ .+..+. +.++..+.|+|.+..+- .. .|+..+. ..|+|++
T Consensus 163 ~~g~~~ii~~~i~~~G~~~G~-d~~~i~----~~~~~~~ipvIasGGv~------s~--------eD~~~l~~~~GvdgV 223 (258)
T PRK01033 163 ALGAGEILLNSIDRDGTMKGY-DLELLK----SFRNALKIPLIALGGAG------SL--------DDIVEAILNLGADAA 223 (258)
T ss_pred HcCCCEEEEEccCCCCCcCCC-CHHHHH----HHHhhCCCCEEEeCCCC------CH--------HHHHHHHHHCCCCEE
Confidence 22 4655543 2212222332 333222 22445789999988743 24 7888887 6899999
Q ss_pred eeC
Q psy6272 378 VLT 380 (547)
Q Consensus 378 mLs 380 (547)
++.
T Consensus 224 ivg 226 (258)
T PRK01033 224 AAG 226 (258)
T ss_pred EEc
Confidence 997
No 451
>PLN02741 riboflavin synthase
Probab=42.57 E-value=89 Score=30.89 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=43.6
Q ss_pred cEEEecCCCcccccCCCCEEEEeceeEEEEEEEeCCeEEEEEE-------eCcEeCCCceeeeC
Q psy6272 172 KRLFVDSMELPKRVIPDDIVYIDRNIKLKVVEKENNDVHCTVI-------RGGKLMDNQLVTVP 228 (547)
Q Consensus 172 ~~i~v~~~~~~~~v~~Gd~I~idD~I~l~V~~v~~~~v~~~V~-------~gG~L~s~Kginlp 228 (547)
..+.+..+.+++.+++||.|-+|- ++|.|.+++++.+.+-+. +=|.++.+.-|||-
T Consensus 23 ~~l~i~~~~~~~~l~~G~SIAvnG-vCLTV~~~~~~~f~vdvipETl~~T~L~~l~~G~~VNLE 85 (194)
T PLN02741 23 FDLKIEASTVLDGVKLGDSIAVNG-TCLTVTEFDGDEFTVGLAPETLRKTSLGELKTGSLVNLE 85 (194)
T ss_pred EEEEEEcchhhcccccCCEEEECc-EEEEEEEECCCEEEEEEEHHHhhhCccccCCCCCEEeec
Confidence 346666566788999999999998 888999999998887773 44666677777774
No 452
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=42.41 E-value=1.4e+02 Score=32.21 Aligned_cols=161 Identities=20% Similarity=0.248 Sum_probs=86.3
Q ss_pred HHHHHHHHhcCCCceEEE---EecCHHHHhh----HHHHHhh-c-CEEEEcCCccc------------------ccCCh-
Q psy6272 268 REMRGMLEDHVDRVLILA---KIETLLGMEY----MDEIIME-S-DGVVLNRIQLA------------------VATSV- 319 (547)
Q Consensus 268 ~~~r~~l~~~~~~i~Iia---kIEt~~av~n----ldeIl~~-~-DgImIargDLg------------------~e~~~- 319 (547)
+++++.|...++++.+|+ -||+++++.. |.++-.. . ++++|=|+-+- -+.++
T Consensus 41 ~~i~~Il~g~d~rllvI~GPCSIed~e~a~eyA~~Lk~l~~~~~d~l~ivmR~y~~KPRTs~g~kGl~~DP~ldgs~~i~ 120 (349)
T PRK09261 41 KEIHNILHGKDDRLLVVVGPCSIHDPKAALEYARRLAKLREELKDKLEIVMRVYFEKPRTTVGWKGLINDPDLDGSFDIN 120 (349)
T ss_pred HHHHHHHcCCCCCeEEEEcCCcCCCHHHHHHHHHHHHHHHhhhhcceEEEEEeccccCCCCCCCcCCCcCcCccccccHH
Confidence 344556665667777887 5888887643 3333221 2 35656666532 11221
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHh
Q psy6272 320 EVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKT 399 (547)
Q Consensus 320 e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~a 399 (547)
+-+..+.+-.++ ..+.|.|+. |.+| +|.-.++ +.|-+|..-.. .+.+
T Consensus 121 ~GL~~~R~ll~~-~~e~Glpva--tE~l-d~~~~~y--------------~~dlvs~~~IG---------------ARt~ 167 (349)
T PRK09261 121 DGLRIARKLLLD-INELGLPAA--TEFL-DPITPQY--------------IADLISWGAIG---------------ARTT 167 (349)
T ss_pred HHHHHHHHHHHH-HHHhCCCeE--EEec-ccccHHH--------------HHhhcceeeec---------------cchh
Confidence 234444443333 678999987 6777 4544333 44555666666 5666
Q ss_pred hhhhhhHHHHHHhhhc--CCCCCChhhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhcCCCCCE
Q psy6272 400 ESVLWEKQVFEDLCAL--ACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPI 464 (547)
Q Consensus 400 E~~~~~~~~f~~~~~~--~~~~~~~~~~ia~aav~~a~~~~a~aIvv~T~sG~tA~~isk~RP~~pI 464 (547)
|+. .+++.-..+... .+...+..-..+..|+.+|.. ....+-++..|+++..-++=.|.+-+
T Consensus 168 esq-~hr~~asg~~~PVg~Kng~~g~i~~~l~Ai~aa~~--~H~fl~~~~~G~~~~i~t~GN~~~hl 231 (349)
T PRK09261 168 ESQ-VHRELASGLSCPVGFKNGTDGNIKVAIDAIIAASA--PHHFLGITKDGRSAIVSTTGNPDCHV 231 (349)
T ss_pred cCH-HHHHHhcCCCCeeEecCCCCCCHHHHHhHHHHHhC--CceeeecCCCCcEEEEECCCCCCEEE
Confidence 652 233222222111 122334444566777777643 44567777777776666665555433
No 453
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=42.29 E-value=25 Score=36.46 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=31.9
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEEeCch
Q psy6272 436 KCQAVAIIVITCSGYSAKLVSK----YRPQCPILAVSSLG 471 (547)
Q Consensus 436 ~~~a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~~~ 471 (547)
+..++.++|-|+||+||--+|. .-|..+.+.+||-.
T Consensus 163 ~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~ 202 (281)
T COG0061 163 SFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPIC 202 (281)
T ss_pred EEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEeecC
Confidence 4689999999999999999997 57889999999953
No 454
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=42.27 E-value=54 Score=31.97 Aligned_cols=77 Identities=13% Similarity=-0.002 Sum_probs=53.5
Q ss_pred cEEEecCCEEEEee--ccccccCCCccEEEecCCCccc--ccCCCCEEEEec---eeEEEEEEEeCCeEEEEEEeCcEeC
Q psy6272 148 SVEIAQGANIVLTA--NQLIETKGTVKRLFVDSMELPK--RVIPDDIVYIDR---NIKLKVVEKENNDVHCTVIRGGKLM 220 (547)
Q Consensus 148 ~i~L~~G~~v~lt~--~~~~~~~~~~~~i~v~~~~~~~--~v~~Gd~I~idD---~I~l~V~~v~~~~v~~~V~~gG~L~ 220 (547)
-.-++.|++.+++. +++|+.......=.++-..|.. .+++|..+.+++ .+..+|+++.++.+. |.-+..|
T Consensus 50 l~g~~~Ge~~~V~IpPE~AfGe~~~~lvq~vp~~~F~~~~~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~--VDfNHpL- 126 (174)
T COG1047 50 LLGKEVGEEFTVEIPPEDAFGEYDPDLVQRVPRDEFQGVGELEVGMEVEAEGGDGEIPGVVTEVSGDRVT--VDFNHPL- 126 (174)
T ss_pred HhCCCCCceeEEEeCchHhcCCCChHHeEEecHHHhCcCCCCCCCcEEEEcCCCceeeEEEEEEcCCEEE--EeCCCcC-
Confidence 34577899988876 5677665555555566566655 589999999987 699999999999864 3333333
Q ss_pred CCceeee
Q psy6272 221 DNQLVTV 227 (547)
Q Consensus 221 s~Kginl 227 (547)
..|.+.|
T Consensus 127 AGktL~f 133 (174)
T COG1047 127 AGKTLHF 133 (174)
T ss_pred CCCeEEE
Confidence 2344444
No 455
>PRK14852 hypothetical protein; Provisional
Probab=42.04 E-value=1e+02 Score=37.75 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
-+..+++.+.+.|..+.|-+--|.. .-+|++++++-.|.|+=+-..+. ..+.+.+...|.++|+|++.++-
T Consensus 387 Kaevaa~~l~~INP~v~I~~~~~~I-~~en~~~fl~~~DiVVDa~D~~~--------~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 387 KLDVMTERALSVNPFLDIRSFPEGV-AAETIDAFLKDVDLLVDGIDFFA--------LDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCC-CHHHHHHHhhCCCEEEECCCCcc--------HHHHHHHHHHHHHcCCCEEEeec
Confidence 3455666777778777766654433 33799999999998886643333 23667788899999999998754
No 456
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=41.96 E-value=3.9e+02 Score=27.13 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=45.5
Q ss_pred EEEEcccCChh---hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHH
Q psy6272 255 IIIMSSVTGAN---SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIA 330 (547)
Q Consensus 255 ~I~~sfV~sa~---di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii 330 (547)
+|++|.+.++= -+..+.+.+.+.|-++.++.-=++.+..+.++.+.+- +||+++... ....+.+...+
T Consensus 5 Gvivp~~~npff~~ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~----~~~~~~l~~~~---- 76 (279)
T PF00532_consen 5 GVIVPDISNPFFAEIIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASS----ENDDEELRRLI---- 76 (279)
T ss_dssp EEEESSSTSHHHHHHHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESS----SCTCHHHHHHH----
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecc----cCChHHHHHHH----
Confidence 57788887763 3444445566666666554433344333445544444 799999833 22234443333
Q ss_pred HHHHHcCCcEEEEcCC
Q psy6272 331 ARCNKQGKPFLVVGDI 346 (547)
Q Consensus 331 ~~c~~~gKPvi~aTq~ 346 (547)
+ .|.|+++....
T Consensus 77 ---~-~~iPvV~~~~~ 88 (279)
T PF00532_consen 77 ---K-SGIPVVLIDRY 88 (279)
T ss_dssp ---H-TTSEEEEESS-
T ss_pred ---H-cCCCEEEEEec
Confidence 3 49999987653
No 457
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=41.88 E-value=1.9e+02 Score=30.95 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=44.8
Q ss_pred EEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcch
Q psy6272 305 GVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQ 384 (547)
Q Consensus 305 gImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Et 384 (547)
.||--+.-.|--.|+.+ +...+.+++. ...||++.-. + +.-+|++.|+..|+|+++++ +--
T Consensus 221 avmPl~~pIGsg~gv~~-p~~i~~~~e~---~~vpVivdAG---------I-----g~~sda~~AmelGadgVL~n-SaI 281 (326)
T PRK11840 221 AVMPLGAPIGSGLGIQN-PYTIRLIVEG---ATVPVLVDAG---------V-----GTASDAAVAMELGCDGVLMN-TAI 281 (326)
T ss_pred EEeeccccccCCCCCCC-HHHHHHHHHc---CCCcEEEeCC---------C-----CCHHHHHHHHHcCCCEEEEc-cee
Confidence 34433444555555432 2333334333 6799998644 2 22299999999999999998 433
Q ss_pred HH--HHHHHHHHHHHHhhh
Q psy6272 385 AH--HRVDILKEILKKTES 401 (547)
Q Consensus 385 a~--eaV~~m~~I~~~aE~ 401 (547)
+. +=|.|-.-.....|+
T Consensus 282 a~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 282 AEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 33 445544444444444
No 458
>PRK06721 threonine synthase; Reviewed
Probab=41.78 E-value=4.2e+02 Score=28.22 Aligned_cols=118 Identities=11% Similarity=0.096 Sum_probs=70.6
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcc-cccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVE-EYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQ 407 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~Ptra-E~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~ 407 (547)
+...|+..|.|+.+. .|... .. .-+...-..||+.+... +. ..++++...+++++-. ++
T Consensus 90 lA~~aa~~G~~~~vv-----vp~~~~~~--------~k~~~~~~~GA~V~~~~-~~-~~~~~~~a~~~~~~~~---~~-- 149 (352)
T PRK06721 90 AAAYAARLGMKCIIV-----IPEGKIAH--------GKLAQAVAYGAEIISIE-GN-FDDALKAVRNIAAEEP---IT-- 149 (352)
T ss_pred HHHHHHHCCCcEEEE-----ECCCCCCH--------HHHHHHHHcCCEEEEEC-CC-HHHHHHHHHHHHHhCC---ce--
Confidence 556789999998875 44321 11 22334456799999997 54 3356666666654421 11
Q ss_pred HHHHhhhcCCCCCChhhHHHHHHHHHHHhcC--CcEEEEEcCCchHHHH----HHh----c-CCCCCEEEEeCchh
Q psy6272 408 VFEDLCALACPPLDPAHSIVIACVNAALKCQ--AVAIIVITCSGYSAKL----VSK----Y-RPQCPILAVSSLGY 472 (547)
Q Consensus 408 ~f~~~~~~~~~~~~~~~~ia~aav~~a~~~~--a~aIvv~T~sG~tA~~----isk----~-RP~~pIiavt~~~~ 472 (547)
+.. .. .+ ...+.-..-+.|+..+++ .++||+.+-+|.+.-- +++ . +|...|++|-+...
T Consensus 150 -~~~---~~-n~-~~~~G~~t~~~Ei~eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~ 219 (352)
T PRK06721 150 -LVN---SV-NP-YRIEGQKTAAFEICDQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGA 219 (352)
T ss_pred -ecc---CC-Cc-hhhhhhhhHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCC
Confidence 110 00 11 122223445566666653 7999999999987762 333 3 48999999999653
No 459
>KOG0538|consensus
Probab=41.74 E-value=1.5e+02 Score=31.80 Aligned_cols=107 Identities=15% Similarity=0.176 Sum_probs=64.5
Q ss_pred HHcCCcEEEEcccC---ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCCcccccC----
Q psy6272 249 VREAVDIIIMSSVT---GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRIQLAVAT---- 317 (547)
Q Consensus 249 ~~~g~d~I~~sfV~---sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIargDLg~e~---- 317 (547)
.+.|+.....+|+. +-+|++.+|+.- ++.|+.| |+-+-|+-..+ .+||++. ..=|-.+
T Consensus 194 ~~sg~~~~~~~~id~Sl~W~Di~wLr~~T-----~LPIvvK-----Gilt~eDA~~Ave~G~~GIIVS-NHGgRQlD~vp 262 (363)
T KOG0538|consen 194 GDSGLAAYVSSQIDPSLSWKDIKWLRSIT-----KLPIVVK-----GVLTGEDARKAVEAGVAGIIVS-NHGGRQLDYVP 262 (363)
T ss_pred cchhhhhhhhcCCCCCCChhhhHHHHhcC-----cCCeEEE-----eecccHHHHHHHHhCCceEEEe-CCCccccCccc
Confidence 34555555555554 347777777643 5788887 55554444433 5899986 2212111
Q ss_pred -ChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH
Q psy6272 318 -SVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH 386 (547)
Q Consensus 318 -~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~ 386 (547)
+++.++++-+ +. .-..||++-..+ --- +||..|+..||-||++. -+...
T Consensus 263 AtI~~L~Evv~----aV-~~ri~V~lDGGV------R~G--------~DVlKALALGAk~VfiG-RP~v~ 312 (363)
T KOG0538|consen 263 ATIEALPEVVK----AV-EGRIPVFLDGGV------RRG--------TDVLKALALGAKGVFIG-RPIVW 312 (363)
T ss_pred chHHHHHHHHH----Hh-cCceEEEEecCc------ccc--------hHHHHHHhcccceEEec-Cchhe
Confidence 2244444433 22 344888875443 246 99999999999999997 44433
No 460
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=41.18 E-value=1.8e+02 Score=31.49 Aligned_cols=89 Identities=15% Similarity=0.228 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
.++.++++.++ ..+.+++-+-+.+.++-+.+ .+|.+-||-++..- -.++..+-+.||||++.|.
T Consensus 153 gl~~L~~~~~e--~Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~n-----------~~LL~~va~t~kPVllk~G 216 (352)
T PRK13396 153 ALELLAAAREA--TGLGIITEVMDAADLEKIAE---VADVIQVGARNMQN-----------FSLLKKVGAQDKPVLLKRG 216 (352)
T ss_pred HHHHHHHHHHH--cCCcEEEeeCCHHHHHHHHh---hCCeEEECcccccC-----------HHHHHHHHccCCeEEEeCC
Confidence 34444444443 35788888888887777665 47999999776653 2346677788999999998
Q ss_pred CCCCCCcccccccCccchhhHHHHHHh-CccEEeeC
Q psy6272 346 ILPDHNVEEYSDVSIGDMNDVNSIVQD-GADVVVLT 380 (547)
Q Consensus 346 ~Le~PtraE~~~~~~~~~~Dv~nav~~-g~D~vmLs 380 (547)
| .+|-.|+ -..+..+.. |.+-++|.
T Consensus 217 ~--~~t~ee~--------~~A~e~i~~~Gn~~viL~ 242 (352)
T PRK13396 217 M--AATIDEW--------LMAAEYILAAGNPNVILC 242 (352)
T ss_pred C--CCCHHHH--------HHHHHHHHHcCCCeEEEE
Confidence 7 3566666 666666654 66556664
No 461
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=41.13 E-value=2.9e+02 Score=28.05 Aligned_cols=137 Identities=15% Similarity=0.116 Sum_probs=72.0
Q ss_pred eCCCCcCCCCCChhh-HHHHHHHHHcCCcEEEE--ccc---CChhhHHHHHHHHHhcCCCceEEEEecCHH-------HH
Q psy6272 227 VPRVTFNLPVIADRD-KHVVDLIVREAVDIIIM--SSV---TGANSIREMRGMLEDHVDRVLILAKIETLL-------GM 293 (547)
Q Consensus 227 lp~~~~~lp~lt~~D-~~di~~~~~~g~d~I~~--sfV---~sa~di~~~r~~l~~~~~~i~IiakIEt~~-------av 293 (547)
.|.+..++..-+.++ ...+..+...|+|.|=+ =+. .+.+++......+.+.-.++.+|.-+.+.. .-
T Consensus 15 ~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~ 94 (253)
T PRK02412 15 APKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSD 94 (253)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCH
Confidence 445555555444444 23345556678887643 222 233444443333433223578888777654 11
Q ss_pred hh----HHHHHhh--cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCC-CCCcccccccCccchhhH
Q psy6272 294 EY----MDEIIME--SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP-DHNVEEYSDVSIGDMNDV 366 (547)
Q Consensus 294 ~n----ldeIl~~--~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le-~PtraE~~~~~~~~~~Dv 366 (547)
+. +...+.. +|.|=| -+..+. ...++++..+++.|..+|.+-+-++ .|+..|+ ...
T Consensus 95 ~~~~~ll~~~~~~~~~d~vDi-----El~~~~----~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l--------~~~ 157 (253)
T PRK02412 95 EEYLALIKAVIKSGLPDYIDV-----ELFSGK----DVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEI--------VER 157 (253)
T ss_pred HHHHHHHHHHHhcCCCCEEEE-----eccCCh----HHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHH--------HHH
Confidence 11 2222222 233322 222222 2345677888899999999988776 7766665 333
Q ss_pred H-HHHHhCccEEeeC
Q psy6272 367 N-SIVQDGADVVVLT 380 (547)
Q Consensus 367 ~-nav~~g~D~vmLs 380 (547)
. .+...|+|.+=+.
T Consensus 158 ~~~~~~~gaDivKia 172 (253)
T PRK02412 158 LRKMESLGADIVKIA 172 (253)
T ss_pred HHHHHHhCCCEEEEE
Confidence 3 3444577766554
No 462
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=40.92 E-value=1.4e+02 Score=27.10 Aligned_cols=68 Identities=16% Similarity=0.204 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEc
Q psy6272 266 SIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 266 di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aT 344 (547)
-++.+++.+.+.+.++.+-+.-+.... .+..+.+.-.|.|+.+-.+ ...+..+.+.|+++|+|++.+.
T Consensus 54 Ka~~~~~~l~~~~p~v~i~~~~~~~~~-~~~~~~~~~~diVi~~~d~----------~~~~~~l~~~~~~~~i~~i~~~ 121 (143)
T cd01483 54 KAEVAARRLNELNPGVNVTAVPEGISE-DNLDDFLDGVDLVIDAIDN----------IAVRRALNRACKELGIPVIDAG 121 (143)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeeecCh-hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEc
Confidence 355667777777766665544333222 2335666667877777443 3467778899999999999863
No 463
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=40.81 E-value=35 Score=30.19 Aligned_cols=51 Identities=18% Similarity=0.255 Sum_probs=36.2
Q ss_pred CCcEEEEEcCCchHHHH-----HHhcCCCCCEEEEeCchhccccccccccceEEeecC
Q psy6272 438 QAVAIIVITCSGYSAKL-----VSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIR 490 (547)
Q Consensus 438 ~a~aIvv~T~sG~tA~~-----isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~ 490 (547)
+-+.+|++|.||.|... .+|.| .+||+++|.+...++ +.-.+|.+-+..+.
T Consensus 43 ~~dl~I~iS~SG~t~e~i~~~~~a~~~-g~~iI~IT~~~~l~~-~~~~~~~~~~~~p~ 98 (119)
T cd05017 43 RKTLVIAVSYSGNTEETLSAVEQAKER-GAKIVAITSGGKLLE-MAREHGVPVIIIPK 98 (119)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEeCCchHHH-HHHHcCCcEEECCC
Confidence 45789999999998763 34545 699999998776444 55556766666544
No 464
>PRK14847 hypothetical protein; Provisional
Probab=40.75 E-value=4.9e+02 Score=27.97 Aligned_cols=148 Identities=7% Similarity=-0.030 Sum_probs=83.9
Q ss_pred CCChhhHHHHHH-HHHcCCcEEEEccc-CChhhHHHHHHHHHhc----CCCceEEEEecCHHHHhhHHHHHhhc-----C
Q psy6272 236 VIADRDKHVVDL-IVREAVDIIIMSSV-TGANSIREMRGMLEDH----VDRVLILAKIETLLGMEYMDEIIMES-----D 304 (547)
Q Consensus 236 ~lt~~D~~di~~-~~~~g~d~I~~sfV-~sa~di~~~r~~l~~~----~~~i~IiakIEt~~av~nldeIl~~~-----D 304 (547)
.+|.+++..|.. ..+.|+|.|=+.|- -+.++.+.++.+.+.. +..+..++..= -+.+|.-++.. +
T Consensus 50 ~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~~e~e~ir~I~~~~~~~~~~~i~~~~r~~----~~dId~a~e~~~~~~~~ 125 (333)
T PRK14847 50 PMDGARKLRLFEQLVAVGLKEIEVAFPSASQTDFDFVRKLIDERRIPDDVTIEALTQSR----PDLIARTFEALAGSPRA 125 (333)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeeCCCCCHHHHHHHHHHHHhCCCCCCcEEEEEecCc----HHHHHHHHHHhCCCCCC
Confidence 456677777654 55699999988875 4677777788777542 12344444321 12333333331 2
Q ss_pred --EEEEcCCccccc----CChHHHHHHHHHHHHHHHHcCC-------cEEEEcCCCCCCCcccccccCccchhhHHHHH-
Q psy6272 305 --GVVLNRIQLAVA----TSVEVTFLAQKMIAARCNKQGK-------PFLVVGDILPDHNVEEYSDVSIGDMNDVNSIV- 370 (547)
Q Consensus 305 --gImIargDLg~e----~~~e~v~~~qk~ii~~c~~~gK-------Pvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav- 370 (547)
.++++-.|+-++ ...+++...-.+.+..++.+|. -|-+..+ +-+|++. ..+-+++.++
T Consensus 126 ~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~E---DasRad~-----dfL~~~~~~a~ 197 (333)
T PRK14847 126 IVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPE---TFSLAEL-----DFAREVCDAVS 197 (333)
T ss_pred EEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeee---cCCCCCH-----HHHHHHHHHHH
Confidence 345555555332 2346676666778888999854 4555433 8888886 1224444543
Q ss_pred Hh------CccEEeeCCcchHH-----HHHHHHHHHHH
Q psy6272 371 QD------GADVVVLTQSEQAH-----HRVDILKEILK 397 (547)
Q Consensus 371 ~~------g~D~vmLsk~Eta~-----eaV~~m~~I~~ 397 (547)
.. |+|-+-|+ +|.= +.-+.+..+++
T Consensus 198 ~~~ga~r~~a~~i~l~--DTVG~~~P~~~~~~i~~l~~ 233 (333)
T PRK14847 198 AIWGPTPQRKMIINLP--ATVESSTANVYADQIEWMHR 233 (333)
T ss_pred HHhCCCccCCcEEEeC--CccccCCHHHHHHHHHHHHH
Confidence 33 46668776 5543 44444444443
No 465
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=40.70 E-value=89 Score=34.90 Aligned_cols=111 Identities=11% Similarity=0.074 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCChh----hHHHHHHHHHhcCCCceEEE--EecCHHHHhhHHHHHhhcCEEEEcCCcc
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGAN----SIREMRGMLEDHVDRVLILA--KIETLLGMEYMDEIIMESDGVVLNRIQL 313 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa~----di~~~r~~l~~~~~~i~Iia--kIEt~~av~nldeIl~~~DgImIargDL 313 (547)
++.++++.|++.|++.|.+.. |+-. |+....+++...-+++.+|+ -|.|++-+..+.+ .+||++||-.-+
T Consensus 167 h~~~El~~al~~~a~iiGiNn-RdL~t~~vd~~~~~~l~~~ip~~~~~vseSGI~t~~d~~~~~~---~~davLiG~~lm 242 (454)
T PRK09427 167 SNEEELERAIALGAKVIGINN-RNLRDLSIDLNRTRELAPLIPADVIVISESGIYTHAQVRELSP---FANGFLIGSSLM 242 (454)
T ss_pred CCHHHHHHHHhCCCCEEEEeC-CCCccceECHHHHHHHHhhCCCCcEEEEeCCCCCHHHHHHHHh---cCCEEEECHHHc
Confidence 577889999999999999874 2221 23333333333234555555 4555555555432 389999997666
Q ss_pred cccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEee
Q psy6272 314 AVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVL 379 (547)
Q Consensus 314 g~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmL 379 (547)
..+=+.+.+... +. ..=|-|++. .. .|+..+...|+|++=+
T Consensus 243 ~~~d~~~~~~~L----~~---~~vKICGit----------~~--------eda~~a~~~GaD~lGf 283 (454)
T PRK09427 243 AEDDLELAVRKL----IL---GENKVCGLT----------RP--------QDAKAAYDAGAVYGGL 283 (454)
T ss_pred CCCCHHHHHHHH----hc---cccccCCCC----------CH--------HHHHHHHhCCCCEEee
Confidence 654333333222 11 111333331 12 6777788888887644
No 466
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=40.67 E-value=60 Score=28.07 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHHhcCCCCCEEEE
Q psy6272 425 SIVIACVNAALKCQAVAIIVITCS---------GYSAKLVSKYRPQCPILAV 467 (547)
Q Consensus 425 ~ia~aav~~a~~~~a~aIvv~T~s---------G~tA~~isk~RP~~pIiav 467 (547)
.++...++.+.+.+++.||+-+.. |+++..+.++-|+|||+.+
T Consensus 72 ~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 72 DVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 466777888899999999988762 6788889998899999875
No 467
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.59 E-value=3.8e+02 Score=26.71 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=64.4
Q ss_pred hHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCCccccc
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRIQLAVA 316 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIargDLg~e 316 (547)
+.++.+.+++.|++|++-|.. +.+-++ +..+ .++..+. |..+..|+..+ +|.|-+-|++.
T Consensus 77 ~~~~~~~a~~aGA~FivsP~~-~~~v~~----~~~~--~~i~~iP------G~~T~~E~~~A~~~Gad~vklFPa~~--- 140 (213)
T PRK06552 77 DAVTARLAILAGAQFIVSPSF-NRETAK----ICNL--YQIPYLP------GCMTVTEIVTALEAGSEIVKLFPGST--- 140 (213)
T ss_pred CHHHHHHHHHcCCCEEECCCC-CHHHHH----HHHH--cCCCEEC------CcCCHHHHHHHHHcCCCEEEECCccc---
Confidence 355789999999999886644 333333 3322 3567776 44455555555 68888877553
Q ss_pred CChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 317 TSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 317 ~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+|++.+..+.. .--+.|++-...+ + . .++..++..|+|++-++
T Consensus 141 ~G~~~ik~l~~------~~p~ip~~atGGI----~---~--------~N~~~~l~aGa~~vavg 183 (213)
T PRK06552 141 LGPSFIKAIKG------PLPQVNVMVTGGV----N---L--------DNVKDWFAAGADAVGIG 183 (213)
T ss_pred CCHHHHHHHhh------hCCCCEEEEECCC----C---H--------HHHHHHHHCCCcEEEEc
Confidence 46555444432 1234786643331 1 3 67788888999999998
No 468
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=40.55 E-value=4.1e+02 Score=28.22 Aligned_cols=131 Identities=11% Similarity=0.065 Sum_probs=66.2
Q ss_pred CCChhhHHHH--------HHHHHcCCcEEEEcc-------------cCChhh---------HHHHH---HHH-HhcCCCc
Q psy6272 236 VIADRDKHVV--------DLIVREAVDIIIMSS-------------VTGANS---------IREMR---GML-EDHVDRV 281 (547)
Q Consensus 236 ~lt~~D~~di--------~~~~~~g~d~I~~sf-------------V~sa~d---------i~~~r---~~l-~~~~~~i 281 (547)
.||..|++.+ +.+.+.|+|+|-+-. .+...| .+.+. +.+ +..+.+.
T Consensus 126 ~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~ 205 (353)
T cd02930 126 ELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDF 205 (353)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCc
Confidence 5788887666 467889999996632 222111 22222 222 2235677
Q ss_pred eEEEEecCH----------HHHhhHHHHHhh-cCEEEEcCCcccccCChH--HHH-HHHHHHHHH-HHHcCCcEEEEcCC
Q psy6272 282 LILAKIETL----------LGMEYMDEIIME-SDGVVLNRIQLAVATSVE--VTF-LAQKMIAAR-CNKQGKPFLVVGDI 346 (547)
Q Consensus 282 ~IiakIEt~----------~av~nldeIl~~-~DgImIargDLg~e~~~e--~v~-~~qk~ii~~-c~~~gKPvi~aTq~ 346 (547)
.|..+|--. ++++-+..+-+. .|.|-|..|...-..+.. ..+ ..+....+. .+..+.||+....+
T Consensus 206 ~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~iPVi~~G~i 285 (353)
T cd02930 206 IIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDIPVIASNRI 285 (353)
T ss_pred eEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCCCEEEcCCC
Confidence 776666322 233333333222 478877655321111110 000 001112222 23358999986553
Q ss_pred CCCCCcccccccCccchhhHHHHHHhC-ccEEeeC
Q psy6272 347 LPDHNVEEYSDVSIGDMNDVNSIVQDG-ADVVVLT 380 (547)
Q Consensus 347 Le~PtraE~~~~~~~~~~Dv~nav~~g-~D~vmLs 380 (547)
- + . .|+..++..| +|.|++.
T Consensus 286 ~---~---~--------~~a~~~i~~g~~D~V~~g 306 (353)
T cd02930 286 N---T---P--------EVAERLLADGDADMVSMA 306 (353)
T ss_pred C---C---H--------HHHHHHHHCCCCChhHhh
Confidence 2 2 2 5556678776 9999998
No 469
>PRK08328 hypothetical protein; Provisional
Probab=40.31 E-value=1.2e+02 Score=30.41 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=43.2
Q ss_pred HHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 270 MRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 270 ~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
+++.+.+.+.++.|-+--+.. .-+|++++++-.|.|+-+-.+. ..+..+-+.|+++|+|++.+
T Consensus 87 a~~~l~~~np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~~----------~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 87 AKWKLERFNSDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDNF----------ETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred HHHHHHHhCCCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 445566667777777644432 3467888888889888774443 23344667899999999875
No 470
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=40.26 E-value=3.7e+02 Score=26.42 Aligned_cols=128 Identities=15% Similarity=0.067 Sum_probs=63.1
Q ss_pred CChhhHHH-HHHHHHcCCcEEEEcccCCh---------------hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHH
Q psy6272 237 IADRDKHV-VDLIVREAVDIIIMSSVTGA---------------NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEII 300 (547)
Q Consensus 237 lt~~D~~d-i~~~~~~g~d~I~~sfV~sa---------------~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl 300 (547)
...+|.+. ++.+.+.|+|.|.+.+--|. +.+.++.++..+.|..+.+-..-.+.--.+.+.+++
T Consensus 64 ~~~~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 64 ANEEDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELA 143 (237)
T ss_dssp SCHHHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHH
T ss_pred ehHHHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHH
Confidence 34455554 55566699999888875543 344444455555555543333333333334444444
Q ss_pred hh-----cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcC-CcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCc
Q psy6272 301 ME-----SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQG-KPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGA 374 (547)
Q Consensus 301 ~~-----~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~g-KPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~ 374 (547)
+. +|.|.++ |=.--+.++.+...-+.+.+ ..+ +|+.+.++ ++.--| + .-...|+..|+
T Consensus 144 ~~~~~~g~~~i~l~--Dt~G~~~P~~v~~lv~~~~~---~~~~~~l~~H~H--nd~Gla-~--------An~laA~~aGa 207 (237)
T PF00682_consen 144 EALAEAGADIIYLA--DTVGIMTPEDVAELVRALRE---ALPDIPLGFHAH--NDLGLA-V--------ANALAALEAGA 207 (237)
T ss_dssp HHHHHHT-SEEEEE--ETTS-S-HHHHHHHHHHHHH---HSTTSEEEEEEB--BTTS-H-H--------HHHHHHHHTT-
T ss_pred HHHHHcCCeEEEee--CccCCcCHHHHHHHHHHHHH---hccCCeEEEEec--CCccch-h--------HHHHHHHHcCC
Confidence 33 4777665 43333334444444333322 234 78888766 011111 1 33346778888
Q ss_pred cEEeeC
Q psy6272 375 DVVVLT 380 (547)
Q Consensus 375 D~vmLs 380 (547)
|.|=.+
T Consensus 208 ~~id~t 213 (237)
T PF00682_consen 208 DRIDGT 213 (237)
T ss_dssp SEEEEB
T ss_pred CEEEcc
Confidence 886443
No 471
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.20 E-value=5.3e+02 Score=28.21 Aligned_cols=38 Identities=13% Similarity=0.129 Sum_probs=25.9
Q ss_pred cCEEEEcCCcccccCChHHHHH-HHHHHHHHHHHcCCcEEEEc
Q psy6272 303 SDGVVLNRIQLAVATSVEVTFL-AQKMIAARCNKQGKPFLVVG 344 (547)
Q Consensus 303 ~DgImIargDLg~e~~~e~v~~-~qk~ii~~c~~~gKPvi~aT 344 (547)
.|.|+|+||-=+ .|++.. -...++++.-+...|||.|-
T Consensus 193 ~Dviii~RGGGS----~eDL~~Fn~e~v~~ai~~~~~Pvis~I 231 (438)
T PRK00286 193 EDVLIVARGGGS----LEDLWAFNDEAVARAIAASRIPVISAV 231 (438)
T ss_pred CCEEEEecCCCC----HHHhhccCcHHHHHHHHcCCCCEEEec
Confidence 499999999432 344432 33456666777899999873
No 472
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=40.07 E-value=79 Score=31.52 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=31.8
Q ss_pred cCEEEEcCCcccccCChHHHHHHHHHHHHHHHH-cCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 303 SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNK-QGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 303 ~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~-~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+|+|||| |=.++ ..+.+.. .++++++ ..+||++ -|...+. +..++|++++-
T Consensus 25 tDaI~VG-GS~gv--t~~~~~~----~v~~ik~~~~lPvil------fp~~~~~--------------i~~~aD~~~~~ 76 (205)
T TIGR01769 25 TDAIMVG-GSLGI--VESNLDQ----TVKKIKKITNLPVIL------FPGNVNG--------------LSRYADAVFFM 76 (205)
T ss_pred CCEEEEc-CcCCC--CHHHHHH----HHHHHHhhcCCCEEE------ECCCccc--------------cCcCCCEEEEE
Confidence 5999999 43443 3344433 4445566 5799998 3444333 45789998773
No 473
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=40.07 E-value=1.7e+02 Score=32.28 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=57.0
Q ss_pred HhhHHHHHhhcCEEEEcCCcccccC-ChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCc-ccccccCccchhhHHHHH
Q psy6272 293 MEYMDEIIMESDGVVLNRIQLAVAT-SVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNV-EEYSDVSIGDMNDVNSIV 370 (547)
Q Consensus 293 v~nldeIl~~~DgImIargDLg~e~-~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~Ptr-aE~~~~~~~~~~Dv~nav 370 (547)
+.++-..++.+|.++-+-||+=.+. |...+.. ...++.+|||+++..|=+ -|=+ ... ..++..+
T Consensus 108 ~~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y-----~l~A~l~gkpv~l~gqsi-GPf~~~~~--------r~l~r~v 173 (426)
T PRK10017 108 FTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEH-----ALCAFMAKKPLYMIGHSV-GPFQDEQF--------NQLANYV 173 (426)
T ss_pred HHHHHHHHHhCCEEEECCCCccccCcccHHHHH-----HHHHHHcCCCEEEECCcC-CCcCCHHH--------HHHHHHH
Confidence 3455556777999999999997763 4433332 245778999999887744 2221 122 4578889
Q ss_pred HhCccEEeeCCcchHHHHHHHH
Q psy6272 371 QDGADVVVLTQSEQAHHRVDIL 392 (547)
Q Consensus 371 ~~g~D~vmLsk~Eta~eaV~~m 392 (547)
+.++|.|.+- .+.+.+-.+-|
T Consensus 174 l~~~~~ItvR-D~~S~~~Lk~l 194 (426)
T PRK10017 174 FGHCDALILR-ESVSLDLMKRS 194 (426)
T ss_pred HhcCCEEEEc-cHHHHHHHHHh
Confidence 9999999998 66655554444
No 474
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=40.01 E-value=3.7e+02 Score=28.84 Aligned_cols=99 Identities=10% Similarity=0.080 Sum_probs=52.2
Q ss_pred hHHHHHHHHHcCCcEEEEcccCCh------------hhHHHH---HHHHHhcCCCceEEEEecCHHHHhhHHHHHhh---
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGA------------NSIREM---RGMLEDHVDRVLILAKIETLLGMEYMDEIIME--- 302 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa------------~di~~~---r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--- 302 (547)
..++++.+++.|+|.|.+.+--|. +.++.+ .++..+.|..+.+-+.-.++.-.+.+.++++.
T Consensus 74 ~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~ 153 (365)
T TIGR02660 74 RDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAE 153 (365)
T ss_pred CHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHH
Confidence 367789999999998887765542 112323 33444455444433333333334455555544
Q ss_pred --cCEEEEcCCc-ccccCChHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy6272 303 --SDGVVLNRIQ-LAVATSVEVTFLAQKMIAARCNKQGKPFLVVGD 345 (547)
Q Consensus 303 --~DgImIargD-Lg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq 345 (547)
+|.|-++ | .|.- .++++...-+.+ ++..+.|+.+.++
T Consensus 154 ~Ga~~i~l~--DT~G~~-~P~~v~~lv~~l---~~~~~v~l~~H~H 193 (365)
T TIGR02660 154 AGADRFRFA--DTVGIL-DPFSTYELVRAL---RQAVDLPLEMHAH 193 (365)
T ss_pred cCcCEEEEc--ccCCCC-CHHHHHHHHHHH---HHhcCCeEEEEec
Confidence 3544433 4 3332 234444444433 3344788888776
No 475
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=39.98 E-value=1.6e+02 Score=31.04 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=22.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHHhCCcE
Q psy6272 55 TNIMATVGENNNSVDLIKLMLRSGVNI 81 (547)
Q Consensus 55 tkIi~TiGpas~~~e~l~~li~aGm~v 81 (547)
.+|.+-.-|.+-+.+.|+.|-++|.+.
T Consensus 104 ~~i~~esrpd~i~~e~L~~l~~aG~~~ 130 (313)
T TIGR01210 104 KEVVVESRPEFIDEEKLEELRKIGVNV 130 (313)
T ss_pred ceEEEEeCCCcCCHHHHHHHHHcCCCE
Confidence 367777788888999999999999984
No 476
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=39.97 E-value=5.7e+02 Score=29.67 Aligned_cols=122 Identities=9% Similarity=0.089 Sum_probs=64.8
Q ss_pred HHHHHHHHHcCCcEEEEcc-cCChhhHHHHHHHHHhcCCCceE-EE-EecCHHHHhhHHHHHhh-----cCEEEEcCCcc
Q psy6272 242 KHVVDLIVREAVDIIIMSS-VTGANSIREMRGMLEDHVDRVLI-LA-KIETLLGMEYMDEIIME-----SDGVVLNRIQL 313 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf-V~sa~di~~~r~~l~~~~~~i~I-ia-kIEt~~av~nldeIl~~-----~DgImIargDL 313 (547)
..+++.+.++|+|.|-+.. .+..+.+....++..+.|.+... ++ .......++.+.++++. +|.|-| .|=
T Consensus 100 ~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i--~Dt 177 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCI--KDM 177 (593)
T ss_pred HHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEE--CCC
Confidence 5678999999999877662 23333344444555555654321 11 12221223333343333 355554 365
Q ss_pred cccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEee
Q psy6272 314 AVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVL 379 (547)
Q Consensus 314 g~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmL 379 (547)
.--+.++++...-+.+.+ +.+.|+.+.|+ +-.=--+ .-...|+..|+|.+=.
T Consensus 178 ~G~l~P~~~~~lv~~lk~---~~~~pi~~H~H---nt~GlA~--------An~laAieAGa~~vD~ 229 (593)
T PRK14040 178 AGLLKPYAAYELVSRIKK---RVDVPLHLHCH---ATTGLST--------ATLLKAIEAGIDGVDT 229 (593)
T ss_pred CCCcCHHHHHHHHHHHHH---hcCCeEEEEEC---CCCchHH--------HHHHHHHHcCCCEEEe
Confidence 444455555555554543 34799999887 2111011 2233577889887644
No 477
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=39.90 E-value=44 Score=29.87 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=29.9
Q ss_pred CCcccccCCCCEEEEeceeEEEEEEEeCCeEEEEEEeCcEeC
Q psy6272 179 MELPKRVIPDDIVYIDRNIKLKVVEKENNDVHCTVIRGGKLM 220 (547)
Q Consensus 179 ~~~~~~v~~Gd~I~idD~I~l~V~~v~~~~v~~~V~~gG~L~ 220 (547)
.++.+.+++||+|..-.=|..+|.+++++.+..++..|..++
T Consensus 47 ~~~~~~Lk~Gd~VvT~gGi~G~Vv~i~~~~v~lei~~g~~i~ 88 (106)
T PRK05585 47 KKMLSSLAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIK 88 (106)
T ss_pred HHHHHhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEE
Confidence 456777888888877775667777788887777775554443
No 478
>PLN02826 dihydroorotate dehydrogenase
Probab=39.75 E-value=1.5e+02 Score=32.59 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=57.4
Q ss_pred CCCChhhHHHHH-HHHHcCCcEEEEcccCC--hh----------------------hHHHHHHHHHhcCCCceEEEEecC
Q psy6272 235 PVIADRDKHVVD-LIVREAVDIIIMSSVTG--AN----------------------SIREMRGMLEDHVDRVLILAKIET 289 (547)
Q Consensus 235 p~lt~~D~~di~-~~~~~g~d~I~~sfV~s--a~----------------------di~~~r~~l~~~~~~i~IiakIEt 289 (547)
|.+++.|+.++. .+.+.|+|+|+++.-.. .. .++.++..-+..+.++.||+-
T Consensus 271 Pdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ipIIgv--- 347 (409)
T PLN02826 271 PDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGKIPLVGC--- 347 (409)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCCCcEEEE---
Confidence 567777877775 58899999999986211 11 122233333333445777763
Q ss_pred HHHHhhHHH----HHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCC
Q psy6272 290 LLGMEYMDE----IIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGK 338 (547)
Q Consensus 290 ~~av~nlde----Il~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gK 338 (547)
-|+.+-++ |..=++.|.|+++=+- -|+.-+..+.+.+.+..++.|.
T Consensus 348 -GGI~sg~Da~e~i~AGAs~VQv~Ta~~~--~Gp~~i~~I~~eL~~~l~~~G~ 397 (409)
T PLN02826 348 -GGVSSGEDAYKKIRAGASLVQLYTAFAY--EGPALIPRIKAELAACLERDGF 397 (409)
T ss_pred -CCCCCHHHHHHHHHhCCCeeeecHHHHh--cCHHHHHHHHHHHHHHHHHcCC
Confidence 34444333 3434899999875322 1455555666666666666663
No 479
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=39.74 E-value=45 Score=30.10 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=31.8
Q ss_pred CcccccCCCCEEEEeceeEEEEEEEeCCeEEEEEEeCcEeC
Q psy6272 180 ELPKRVIPDDIVYIDRNIKLKVVEKENNDVHCTVIRGGKLM 220 (547)
Q Consensus 180 ~~~~~v~~Gd~I~idD~I~l~V~~v~~~~v~~~V~~gG~L~ 220 (547)
++...+++||+|..--=|..+|.+++++.+..++..|-.++
T Consensus 34 ~m~~~Lk~GD~VvT~gGi~G~V~~I~d~~v~leia~gv~i~ 74 (109)
T PRK05886 34 DLHESLQPGDRVHTTSGLQATIVGITDDTVDLEIAPGVVTT 74 (109)
T ss_pred HHHHhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEE
Confidence 56778899999888886667788888888888876666664
No 480
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=39.65 E-value=5.4e+02 Score=29.77 Aligned_cols=123 Identities=11% Similarity=0.120 Sum_probs=64.9
Q ss_pred hHHHHHHHHHcCCcEEEEc-ccCChhhHHHHHHHHHhcCCCceEE-EEec----CHHHHhh-HHHHHhh-cCEEEEcCCc
Q psy6272 241 DKHVVDLIVREAVDIIIMS-SVTGANSIREMRGMLEDHVDRVLIL-AKIE----TLLGMEY-MDEIIME-SDGVVLNRIQ 312 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~s-fV~sa~di~~~r~~l~~~~~~i~Ii-akIE----t~~av~n-ldeIl~~-~DgImIargD 312 (547)
-..+++.++++|+|.|-+. ..+..+.+....++..+.|..+..- +--- |.+-+.. ++++.+. +|.|-|. |
T Consensus 93 v~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i~--D 170 (582)
T TIGR01108 93 VERFVKKAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICIK--D 170 (582)
T ss_pred HHHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC--C
Confidence 3567899999999987665 3344455555556666666544421 1111 1222222 2333332 4665554 5
Q ss_pred ccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEee
Q psy6272 313 LAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVL 379 (547)
Q Consensus 313 Lg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmL 379 (547)
=.--+.+..+...-+.+. ++.+.|+.+.|+ +-.=--+ .-...|+..|+|.+=.
T Consensus 171 t~G~~~P~~v~~lv~~lk---~~~~~pi~~H~H---nt~Gla~--------An~laAveaGa~~vd~ 223 (582)
T TIGR01108 171 MAGILTPKAAYELVSALK---KRFGLPVHLHSH---ATTGMAE--------MALLKAIEAGADGIDT 223 (582)
T ss_pred CCCCcCHHHHHHHHHHHH---HhCCCceEEEec---CCCCcHH--------HHHHHHHHhCCCEEEe
Confidence 444444445544444443 334799999887 2211111 2334677888887644
No 481
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=39.64 E-value=4.7e+02 Score=27.42 Aligned_cols=125 Identities=8% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCCChhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcc
Q psy6272 234 LPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQL 313 (547)
Q Consensus 234 lp~lt~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDL 313 (547)
+|.++-+|. ++.|.+.+. .|..-.|.+.+.++.+.+..++. +..+|.++ ++|.+
T Consensus 1 M~lv~~~~l--L~~A~~~~y-AV~AfN~~n~e~~~avi~AAe~~--~sPvIiq~---------------------~~~~~ 54 (285)
T PRK07709 1 MPLVSMKEM--LNKALEGKY-AVGQFNMNNLEWTQAILAAAEEE--KSPVILGV---------------------SEGAA 54 (285)
T ss_pred CCCCcHHHH--HHHHHHCCc-eEEEEEECCHHHHHHHHHHHHHH--CCCEEEEc---------------------Ccchh
Q ss_pred cccCChHHHHHHHHHHHHHHHHcC--CcEEEEcCCCCCCCcc-cccccCccchhhHHHHHHhCccEEeeCCcchHH--HH
Q psy6272 314 AVATSVEVTFLAQKMIAARCNKQG--KPFLVVGDILPDHNVE-EYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH--HR 388 (547)
Q Consensus 314 g~e~~~e~v~~~qk~ii~~c~~~g--KPvi~aTq~Le~Ptra-E~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~--ea 388 (547)
....|++.+. ..+...++++. .||.+ .-+.. .. .++..|+..|.+.||.. +-..- |-
T Consensus 55 ~~~~~~~~~~---~~~~~~a~~~~~~VPV~l------HLDHg~~~--------e~i~~ai~~GftSVM~D-gS~lp~eeN 116 (285)
T PRK07709 55 RHMTGFKTVV---AMVKALIEEMNITVPVAI------HLDHGSSF--------EKCKEAIDAGFTSVMID-ASHHPFEEN 116 (285)
T ss_pred hhcCCHHHHH---HHHHHHHHHcCCCCcEEE------ECCCCCCH--------HHHHHHHHcCCCEEEEe-CCCCCHHHH
Q ss_pred HHHHHHHHHHhhhh
Q psy6272 389 VDILKEILKKTESV 402 (547)
Q Consensus 389 V~~m~~I~~~aE~~ 402 (547)
|+.-+++.+.+.+.
T Consensus 117 i~~Trevv~~Ah~~ 130 (285)
T PRK07709 117 VETTKKVVEYAHAR 130 (285)
T ss_pred HHHHHHHHHHHHHc
No 482
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=39.64 E-value=87 Score=30.61 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHcCCcEEEEcccC------ChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh--cCEEEEcCC
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVT------GANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME--SDGVVLNRI 311 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~------sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~--~DgImIarg 311 (547)
.-.+.++...+.|+|+|.+.-.. ...+...++...+ ..++.|++- ......+.+.+++.. +|+||+||+
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~--~~~ipvi~~-Ggi~~~~d~~~~l~~~gad~V~igr~ 215 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKE--AVSIPVIAN-GDIFSLEDALRCLEQTGVDGVMIGRG 215 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHh--CCCCeEEEe-CCCCCHHHHHHHHHhcCCCEEEEcHH
Confidence 33455667778899999765421 1234444444332 234666662 222233445555554 799999998
Q ss_pred ccc
Q psy6272 312 QLA 314 (547)
Q Consensus 312 DLg 314 (547)
=|.
T Consensus 216 ~l~ 218 (231)
T cd02801 216 ALG 218 (231)
T ss_pred hHh
Confidence 665
No 483
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=39.45 E-value=1.5e+02 Score=28.84 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEee
Q psy6272 325 AQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVL 379 (547)
Q Consensus 325 ~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmL 379 (547)
+....++.++++|++|.+.|- + + . ..+..++..|+|+++-
T Consensus 178 ~~~~~v~~~~~~G~~v~~wtv--n--~---~--------~~~~~~~~~Gvd~i~T 217 (220)
T cd08579 178 LNKEFIRQAHQNGKKVYVWTV--N--D---P--------DDMQRYLAMGVDGIIT 217 (220)
T ss_pred cCHHHHHHHHHCCCEEEEEcC--C--C---H--------HHHHHHHHcCCCEEeC
Confidence 456789999999999998873 1 1 2 4446678889999874
No 484
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=39.38 E-value=3.4e+02 Score=28.29 Aligned_cols=128 Identities=10% Similarity=0.016 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHH---hCccEEeeCCcchHHHHHHHHHHHHHHhhh
Q psy6272 325 AQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQ---DGADVVVLTQSEQAHHRVDILKEILKKTES 401 (547)
Q Consensus 325 ~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~---~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~ 401 (547)
+.+++++..++.|+|||. +--|.++ -.-+.-.+.++. .|+|++-++ +-.-.+.++-..+.+.+..+
T Consensus 74 ~l~~~i~~l~~~g~~Vil------D~K~~DI----~nTv~~ya~a~~~~~~g~DavTVh-p~~G~d~l~~~~~~~~~~~k 142 (278)
T PRK00125 74 QLERTIAYLREAGVLVIA------DAKRGDI----GSTAEAYAKAAFESPLEADAVTVS-PYMGFDSLEPYLEYAEEHGK 142 (278)
T ss_pred HHHHHHHHHHHCCCcEEE------EeecCCh----HHHHHHHHHHHhcCccCCcEEEEC-CcCCHHHHHHHHHHHHhcCC
Confidence 345588999999999987 3333333 000122334454 689999998 42222444444333333222
Q ss_pred hhh------hH--HHHHHhhhcCCCCCChhhHHHHHHHHHHH----hcCCcEEEEEcCCchHHHHHHhcCCCCCEE
Q psy6272 402 VLW------EK--QVFEDLCALACPPLDPAHSIVIACVNAAL----KCQAVAIIVITCSGYSAKLVSKYRPQCPIL 465 (547)
Q Consensus 402 ~~~------~~--~~f~~~~~~~~~~~~~~~~ia~aav~~a~----~~~a~aIvv~T~sG~tA~~isk~RP~~pIi 465 (547)
.++ +. .-|.++. ...-.+..+.++.-+..+.. ..+...+||-++.+.-++.+-+.-|..||+
T Consensus 143 ~vfVlvlTSnp~s~~lq~~~--~~~~~~l~~~V~~~a~~~~~~~~~~~g~~G~VVgaT~p~e~~~iR~~~~~~~iL 216 (278)
T PRK00125 143 GVFVLCRTSNPGGSDLQFLR--TADGRPLYQHVADLAAALNNLGNCGYGSIGLVVGATFPPELAAVRKILGGMPLL 216 (278)
T ss_pred EEEEEEeCCCCCHHHHHhhh--ccCCCcHHHHHHHHHHHHhccccCCCCCCEEEECCCCHHHHHHHHHhCCCCeEE
Confidence 111 11 0111110 00111345556655554443 366677777776677777777666665543
No 485
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=39.29 E-value=73 Score=32.89 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=53.2
Q ss_pred hhhHHHHHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEc
Q psy6272 239 DRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLN 309 (547)
Q Consensus 239 ~~D~~di~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIa 309 (547)
+.|...++.=++.|+|+++--++-+++.+.+..+.+.+.|-++.|++-|=-.....++.-+...+ ||-|.
T Consensus 159 ~~~~~~l~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~~-Gv~iP 228 (287)
T PF02219_consen 159 EAELKRLKKKIDAGADFIITQPFFDAEAFERFLDRLREAGIDVPIIPGIMPLTSAKSARFLAKLC-GVDIP 228 (287)
T ss_dssp HHHHHHHHHHHHTTESEEEEEE-SSHHHHHHHHHHHHHTTHTSEEEEEEE-HCCHHHHHHHHHHH-T-EEE
T ss_pred HHHHHHHHHHHHCCCCEEeccccCCHHHHHHHHHHHHHcCCCCcEEEEEeccCCHHHHHHHHhcc-CccCC
Confidence 45677788888999999999999999999999999988888888888776555566665555555 55544
No 486
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=38.94 E-value=2.6e+02 Score=28.00 Aligned_cols=103 Identities=22% Similarity=0.284 Sum_probs=60.6
Q ss_pred HHHHHHcCCcEEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcCCccc------
Q psy6272 245 VDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNRIQLA------ 314 (547)
Q Consensus 245 i~~~~~~g~d~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIargDLg------ 314 (547)
++.|++.|+|+|.++.= -..+..+++.+.. + ++|. . +..+++|...+ +|.|.+|+--=.
T Consensus 74 ~dlA~~~~AdGVHlGq~--D~~~~~ar~~~~~---~-~iIG-~----S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~ 142 (211)
T COG0352 74 VDLALAVGADGVHLGQD--DMPLAEARELLGP---G-LIIG-L----STHDLEEALEAEELGADYVGLGPIFPTSTKPDA 142 (211)
T ss_pred HHHHHhCCCCEEEcCCc--ccchHHHHHhcCC---C-CEEE-e----ecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCC
Confidence 56788999999999964 4456667776642 2 2231 1 23344444443 799999974322
Q ss_pred ccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 315 VATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 315 ~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
--.|++.+. +.++...+|++.-..| +| ..+......|+|+|-+-
T Consensus 143 ~~~G~~~l~-------~~~~~~~iP~vAIGGi--~~-------------~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 143 PPLGLEGLR-------EIRELVNIPVVAIGGI--NL-------------ENVPEVLEAGADGVAVV 186 (211)
T ss_pred CccCHHHHH-------HHHHhCCCCEEEEcCC--CH-------------HHHHHHHHhCCCeEEeh
Confidence 223333333 2233344998876554 22 34445566799998775
No 487
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=38.88 E-value=5.1e+02 Score=27.60 Aligned_cols=98 Identities=11% Similarity=-0.033 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCcEEEEcc-cCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh-----cCEEEEcCCcccc
Q psy6272 242 KHVVDLIVREAVDIIIMSS-VTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME-----SDGVVLNRIQLAV 315 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf-V~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~-----~DgImIargDLg~ 315 (547)
.++++.+.++|+|.|-+.+ ...++.+.+..++..+.|..+.....--+....+.+-+.++. +|.|-|. |=.-
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~--DT~G 167 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIV--DSAG 167 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEc--cCCC
Confidence 5679999999999988765 333344455555566666554433322222222333333332 4666554 4333
Q ss_pred cCChHHHHHHHHHHHHHHH-HcC--CcEEEEcC
Q psy6272 316 ATSVEVTFLAQKMIAARCN-KQG--KPFLVVGD 345 (547)
Q Consensus 316 e~~~e~v~~~qk~ii~~c~-~~g--KPvi~aTq 345 (547)
.+-++++.. ++.+.+ ..+ .|+.+.++
T Consensus 168 ~~~P~~v~~----~v~~l~~~l~~~i~ig~H~H 196 (333)
T TIGR03217 168 AMLPDDVRD----RVRALKAVLKPETQVGFHAH 196 (333)
T ss_pred CCCHHHHHH----HHHHHHHhCCCCceEEEEeC
Confidence 333344433 333333 344 78888766
No 488
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=38.65 E-value=4.9e+02 Score=27.31 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=66.2
Q ss_pred HHHhcCCCceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCC
Q psy6272 273 MLEDHVDRVLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHN 351 (547)
Q Consensus 273 ~l~~~~~~i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~Pt 351 (547)
+.++.+-.+.+..+.... .++.+.+.+.. .+-||+---+ ++.++....-+++.+.|+++|.||=.--.-+ -..
T Consensus 70 ~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S~----l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i-~g~ 143 (293)
T PRK07315 70 LVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGSH----LPVEENLKLAKEVVEKAHAKGISVEAEVGTI-GGE 143 (293)
T ss_pred HHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCCC----CCHHHHHHHHHHHHHHHHHcCCEEEEecCcc-cCc
Confidence 333333356788888887 66666666655 5899988555 4678888888889999999999983221111 110
Q ss_pred cccccccCc-cchhhHHHHHHhCccEEeeC
Q psy6272 352 VEEYSDVSI-GDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 352 raE~~~~~~-~~~~Dv~nav~~g~D~vmLs 380 (547)
...++..|. .+..++..|+..|+|++-++
T Consensus 144 ed~~~g~s~~t~peea~~f~~tgvD~LAv~ 173 (293)
T PRK07315 144 EDGIIGKGELAPIEDAKAMVETGIDFLAAG 173 (293)
T ss_pred CccccCccCCCCHHHHHHHHHcCCCEEeec
Confidence 111222232 44577778888899998887
No 489
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=38.65 E-value=3.7e+02 Score=27.68 Aligned_cols=145 Identities=15% Similarity=0.160 Sum_probs=78.8
Q ss_pred CCChhhHHHHHHHHHcCCcEEEEcccC-------------ChhhHHHHHHHHHhcCCCceEEEEec-------CHHHHhh
Q psy6272 236 VIADRDKHVVDLIVREAVDIIIMSSVT-------------GANSIREMRGMLEDHVDRVLILAKIE-------TLLGMEY 295 (547)
Q Consensus 236 ~lt~~D~~di~~~~~~g~d~I~~sfV~-------------sa~di~~~r~~l~~~~~~i~IiakIE-------t~~av~n 295 (547)
.++-+|..--+.+-+.|+|.|....-- +-+++...-+.+....+...|++=++ -.++++|
T Consensus 16 ~~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~ 95 (254)
T cd06557 16 MLTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRN 95 (254)
T ss_pred EEeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHH
Confidence 356677777778888899999754110 11222222222222223455778775 2344777
Q ss_pred HHHHHh-h-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCccccc-cc-----C---c-cch
Q psy6272 296 MDEIIM-E-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYS-DV-----S---I-GDM 363 (547)
Q Consensus 296 ldeIl~-~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~-~~-----~---~-~~~ 363 (547)
.-.+++ . ++||.|-=|+ .+...|+++.++|+||+-.-.+ .|...-.. ++ + + .-+
T Consensus 96 a~r~~~~aGa~aVkiEd~~------------~~~~~I~al~~agipV~gHiGL--~pq~~~~~gg~~~~grt~~~a~~~i 161 (254)
T cd06557 96 AARLMKEAGADAVKLEGGA------------EVAETIRALVDAGIPVMGHIGL--TPQSVNQLGGYKVQGKTEEEAERLL 161 (254)
T ss_pred HHHHHHHhCCeEEEEcCcH------------HHHHHHHHHHHcCCCeeccccc--cceeeeccCCceeccCCHHHHHHHH
Confidence 777777 3 6899987542 3445778888999998832111 11111000 00 0 0 012
Q ss_pred hhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHh
Q psy6272 364 NDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKT 399 (547)
Q Consensus 364 ~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~a 399 (547)
.|.-.....|+|+++|- +-.. +.+..|+++.
T Consensus 162 ~ra~a~~~AGA~~i~lE-~v~~----~~~~~i~~~v 192 (254)
T cd06557 162 EDALALEEAGAFALVLE-CVPA----ELAKEITEAL 192 (254)
T ss_pred HHHHHHHHCCCCEEEEc-CCCH----HHHHHHHHhC
Confidence 44445667799999987 4432 2444555544
No 490
>PTZ00300 pyruvate kinase; Provisional
Probab=38.57 E-value=4.2e+02 Score=29.67 Aligned_cols=237 Identities=16% Similarity=0.149 Sum_probs=126.0
Q ss_pred CCCEEEEec-eeEE-----EEEEEeCCeEEEEEE--eCc-EeC---CCceeeeCCCCcCCCCCChhhHHHHHHHHHcCCc
Q psy6272 187 PDDIVYIDR-NIKL-----KVVEKENNDVHCTVI--RGG-KLM---DNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVD 254 (547)
Q Consensus 187 ~Gd~I~idD-~I~l-----~V~~v~~~~v~~~V~--~gG-~L~---s~Kginlp~~~~~lp~lt~~D~~di~~~~~~g~d 254 (547)
..+.|+++. .+-- ..+-+++..+..+|. +++ .+. -+-|.--++.-+++|... .
T Consensus 76 ~~~~i~v~~~~l~~~v~~G~~ilidDG~i~l~V~~~~~~~~v~~~v~~gG~l~~~kgvnlp~~~--------------~- 140 (454)
T PTZ00300 76 TKDKFYIDYQNLSKVVRPGGYIYIDDGILILHVQSHEDEQTLKCTVTNAHTISDRRGVNLPGCD--------------V- 140 (454)
T ss_pred CCCEEEecCcccccccCCCCEEEEeCCeEEEEEEEEcCCceEEEEEecCcEecCCCccccCCCc--------------c-
Confidence 445788877 4311 112245667888775 232 332 234445556667776521 1
Q ss_pred EEEEcccCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHH
Q psy6272 255 IIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCN 334 (547)
Q Consensus 255 ~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~ 334 (547)
-++.+ +..|...++-.++ .|-+...++.+++++-++.+-+++..
T Consensus 141 --~l~~l-tekD~~dI~~ald-~gvd~I~~SfVrsaeDv~~vr~~l~~-------------------------------- 184 (454)
T PTZ00300 141 --DLPAV-SAKDCADLQFGVE-QGVDMIFASFIRSAEQVGEVRKALGA-------------------------------- 184 (454)
T ss_pred --CCCCC-ChhhHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHHHh--------------------------------
Confidence 12333 4456666655553 56677788899998888877777621
Q ss_pred HcCC-cEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHH-----HHHHHHHHHHHHhhhh----hh
Q psy6272 335 KQGK-PFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESV----LW 404 (547)
Q Consensus 335 ~~gK-Pvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~-----eaV~~m~~I~~~aE~~----~~ 404 (547)
+|. +.++| + .| ++ |. -+=...|..++|++|+.-|+=+. +....+.+|++.+.++ +.
T Consensus 185 -~~~~~~Iia-K-IE--t~-ea--------v~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ 250 (454)
T PTZ00300 185 -KGGDIMIIC-K-IE--NH-QG--------VQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVIC 250 (454)
T ss_pred -cCCCceEEE-E-EC--CH-HH--------HHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEE
Confidence 232 33333 3 22 22 22 22233455999999998888777 5555666666666543 22
Q ss_pred hHHHHHHhhhcCCCCCChhhH--HHHH-----------------------------HHHHHHhc-CCcEEEEE-------
Q psy6272 405 EKQVFEDLCALACPPLDPAHS--IVIA-----------------------------CVNAALKC-QAVAIIVI------- 445 (547)
Q Consensus 405 ~~~~f~~~~~~~~~~~~~~~~--ia~a-----------------------------av~~a~~~-~a~aIvv~------- 445 (547)
-.|+.+.+...- .| +.+|. +|.+ .+..|++. +-....-.
T Consensus 251 ATQmLeSM~~~p-~P-TRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~ 328 (454)
T PTZ00300 251 ATQMLESMTYNP-RP-TRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYVFFNSIKKLQPI 328 (454)
T ss_pred ECchHHHHhhCC-CC-CchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchhhhhhhhhccccC
Confidence 234544443221 11 11111 1111 11112110 00000000
Q ss_pred --c---CCchHHHHHHhcCCCCCEEEEeCchhccccccccccceEEeecC
Q psy6272 446 --T---CSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIR 490 (547)
Q Consensus 446 --T---~sG~tA~~isk~RP~~pIiavt~~~~~ar~l~l~~GV~p~~~~~ 490 (547)
+ .=..+|-.+|..-.-..|+++|.+.++||.++=+|--.|++.-.
T Consensus 329 ~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~t 378 (454)
T PTZ00300 329 PMSAEEAVCSSAVNSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVT 378 (454)
T ss_pred CCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEC
Confidence 0 00123444444444446999999999999999999999988654
No 491
>KOG2335|consensus
Probab=38.46 E-value=94 Score=33.60 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHcCCcEEEEcccCCh---------hhHHHHHHHHHhcCCCceEEEE--ecCHHHHhhHHHHHhh--cCEE
Q psy6272 240 RDKHVVDLIVREAVDIIIMSSVTGA---------NSIREMRGMLEDHVDRVLILAK--IETLLGMEYMDEIIME--SDGV 306 (547)
Q Consensus 240 ~D~~di~~~~~~g~d~I~~sfV~sa---------~di~~~r~~l~~~~~~i~Iiak--IEt~~av~nldeIl~~--~DgI 306 (547)
+-.+..+...+.|++.+.+- =|++ .|...++...+...+ +.+||- |.+ ++..+.+++. +|||
T Consensus 156 kTvd~ak~~e~aG~~~ltVH-GRtr~~kg~~~~pad~~~i~~v~~~~~~-ipviaNGnI~~---~~d~~~~~~~tG~dGV 230 (358)
T KOG2335|consen 156 KTVDYAKMLEDAGVSLLTVH-GRTREQKGLKTGPADWEAIKAVRENVPD-IPVIANGNILS---LEDVERCLKYTGADGV 230 (358)
T ss_pred HHHHHHHHHHhCCCcEEEEe-cccHHhcCCCCCCcCHHHHHHHHHhCcC-CcEEeeCCcCc---HHHHHHHHHHhCCceE
Confidence 33555667888999998873 2222 233444433332222 788884 544 4455556664 7999
Q ss_pred EEcCCcccc
Q psy6272 307 VLNRIQLAV 315 (547)
Q Consensus 307 mIargDLg~ 315 (547)
|+|||=|..
T Consensus 231 M~arglL~N 239 (358)
T KOG2335|consen 231 MSARGLLYN 239 (358)
T ss_pred EecchhhcC
Confidence 999998764
No 492
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=38.45 E-value=88 Score=33.90 Aligned_cols=67 Identities=18% Similarity=0.274 Sum_probs=45.4
Q ss_pred hHHHHHHHHHcCCcEEEEcccCCh------hhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhh----cCEEEEcC
Q psy6272 241 DKHVVDLIVREAVDIIIMSSVTGA------NSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME----SDGVVLNR 310 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sfV~sa------~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~----~DgImIar 310 (547)
+.+|.+.+++.|+|+|.+|.---- ..+..+.+..... ++.||+- -|+.+-.+|+++ +|++||||
T Consensus 246 ~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~--~~~vi~d----GGIr~g~Dv~KALaLGA~aV~iGr 319 (361)
T cd04736 246 TAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT--YKPVLID----SGIRRGSDIVKALALGANAVLLGR 319 (361)
T ss_pred CHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh--CCeEEEe----CCCCCHHHHHHHHHcCCCEEEECH
Confidence 566789999999999998864321 1244444443322 2566653 567777777766 79999999
Q ss_pred Ccc
Q psy6272 311 IQL 313 (547)
Q Consensus 311 gDL 313 (547)
.=|
T Consensus 320 ~~l 322 (361)
T cd04736 320 ATL 322 (361)
T ss_pred HHH
Confidence 877
No 493
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=38.31 E-value=1.2e+02 Score=32.90 Aligned_cols=66 Identities=12% Similarity=0.056 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHhhcCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEE
Q psy6272 267 IREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVV 343 (547)
Q Consensus 267 i~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~~~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~a 343 (547)
++.+++.|.+.|..+.|.+.-+... -+|+++++.-.|.|+-+-.++ ..+..+-+.|+++|||++.+
T Consensus 98 a~~a~~~l~~~np~v~i~~~~~~i~-~~~~~~~~~~~D~Vvd~~d~~----------~~r~~ln~~~~~~~~p~v~~ 163 (392)
T PRK07878 98 AQSARDSIVEINPLVNVRLHEFRLD-PSNAVELFSQYDLILDGTDNF----------ATRYLVNDAAVLAGKPYVWG 163 (392)
T ss_pred HHHHHHHHHHhCCCcEEEEEeccCC-hhHHHHHHhcCCEEEECCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 4556677777788777765444333 257888888899888774442 34555778999999998875
No 494
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=38.22 E-value=4e+02 Score=26.17 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 325 AQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 325 ~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
+....++.++++|++|.+-|- .+. .++-.++..|+|+++-.
T Consensus 189 ~~~~~v~~~~~~G~~v~~wTv----n~~-----------~~~~~l~~~GVdgi~TD 229 (233)
T cd08582 189 LNPAFIKALRDAGLKLNVWTV----DDA-----------EDAKRLIELGVDSITTN 229 (233)
T ss_pred CCHHHHHHHHHCCCEEEEEeC----CCH-----------HHHHHHHHCCCCEEEcC
Confidence 445689999999999998873 222 44466788899998754
No 495
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=38.22 E-value=4.2e+02 Score=26.39 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=76.0
Q ss_pred hHHHHHHHHHcCCcEEEEcc-------cCChhhHHHHHHHHHhcCCCceEEEEecCHHH------------HhhHHHHHh
Q psy6272 241 DKHVVDLIVREAVDIIIMSS-------VTGANSIREMRGMLEDHVDRVLILAKIETLLG------------MEYMDEIIM 301 (547)
Q Consensus 241 D~~di~~~~~~g~d~I~~sf-------V~sa~di~~~r~~l~~~~~~i~IiakIEt~~a------------v~nldeIl~ 301 (547)
+.+++..|.+.|||-|=+-- .-|...++.+++ ..++.|.++|--+.| .+.+....+
T Consensus 9 s~~~a~~A~~~GAdRiELc~~l~~GGlTPS~g~i~~~~~-----~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~ 83 (201)
T PF03932_consen 9 SLEDALAAEAGGADRIELCSNLEVGGLTPSLGLIRQARE-----AVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRE 83 (201)
T ss_dssp SHHHHHHHHHTT-SEEEEEBTGGGT-B---HHHHHHHHH-----HTTSEEEEE--SSSS-S---HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEECCCccCCCcCcCHHHHHHHHh-----hcCCceEEEECCCCCCccCCHHHHHHHHHHHHHHHH
Confidence 46788889999999887631 223344555554 246888888876665 112222222
Q ss_pred h-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeC
Q psy6272 302 E-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT 380 (547)
Q Consensus 302 ~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLs 380 (547)
. +||+.+|-=+=.-++..+ +-+++++.|. |.|+-+.-- .|.+.....-+-..+..|+|.|+-|
T Consensus 84 ~GadG~VfG~L~~dg~iD~~----~~~~Li~~a~--~~~~tFHRA----------fD~~~d~~~al~~L~~lG~~rVLTS 147 (201)
T PF03932_consen 84 LGADGFVFGALTEDGEIDEE----ALEELIEAAG--GMPVTFHRA----------FDEVPDPEEALEQLIELGFDRVLTS 147 (201)
T ss_dssp TT-SEEEE--BETTSSB-HH----HHHHHHHHHT--TSEEEE-GG----------GGGSSTHHHHHHHHHHHT-SEEEES
T ss_pred cCCCeeEEEeECCCCCcCHH----HHHHHHHhcC--CCeEEEeCc----------HHHhCCHHHHHHHHHhcCCCEEECC
Confidence 2 699999853222233322 3344666664 899888522 2222222233445667799999998
Q ss_pred Ccch--HHHHHHHHHHHHHHhhh
Q psy6272 381 QSEQ--AHHRVDILKEILKKTES 401 (547)
Q Consensus 381 k~Et--a~eaV~~m~~I~~~aE~ 401 (547)
|-. +.+.+..|++.++.+..
T Consensus 148 -Gg~~~a~~g~~~L~~lv~~a~~ 169 (201)
T PF03932_consen 148 -GGAPTALEGIENLKELVEQAKG 169 (201)
T ss_dssp -TTSSSTTTCHHHHHHHHHHHTT
T ss_pred -CCCCCHHHHHHHHHHHHHHcCC
Confidence 543 33888888888776654
No 496
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=38.11 E-value=1.1e+02 Score=26.45 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCcEEEEcc--cCChhhHHHHHHHHHhcCCCceEEEEecCHHHHhhHHHHHh---hcCEEEEcCCcccc
Q psy6272 242 KHVVDLIVREAVDIIIMSS--VTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIM---ESDGVVLNRIQLAV 315 (547)
Q Consensus 242 ~~di~~~~~~g~d~I~~sf--V~sa~di~~~r~~l~~~~~~i~IiakIEt~~av~nldeIl~---~~DgImIargDLg~ 315 (547)
.+..+.+.+.++|.|++|. ..+...+.++.+.+.+.+.++.+++- -+.+-.+-+++++ ..|.+++|-|+.++
T Consensus 41 ~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~G--G~~~t~~~~~~l~~~~~~D~vv~GegE~~~ 117 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVG--GPHATADPEEILREYPGIDYVVRGEGEEAF 117 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEE--ESSSGHHHHHHHHHHHTSEEEEEETTSSHH
T ss_pred HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEE--CCchhcChHHHhccCcCcceecCCChHHhh
Confidence 3345677788999999986 55566777777777777777776653 1222334555664 35999999998763
No 497
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=37.99 E-value=3.2e+02 Score=29.24 Aligned_cols=137 Identities=12% Similarity=0.170 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHcCCc--EEEEcccCChhhHHHHHHHHHhcCCCceEEEEe-cCHHHHhhHHHHHhhc----CEEEEcCC
Q psy6272 239 DRDKHVVDLIVREAVD--IIIMSSVTGANSIREMRGMLEDHVDRVLILAKI-ETLLGMEYMDEIIMES----DGVVLNRI 311 (547)
Q Consensus 239 ~~D~~di~~~~~~g~d--~I~~sfV~sa~di~~~r~~l~~~~~~i~IiakI-Et~~av~nldeIl~~~----DgImIarg 311 (547)
++|.+.++.+++.--+ .++-|- +.++.+++-.+..+.+. .+++.- -..+....|-+.+... +-|++.++
T Consensus 136 ~kD~evleaale~~~g~~pLInSa--t~en~~~i~~lA~~y~~--~Vva~s~~Dln~ak~L~~~l~~~Gi~~edIviDP~ 211 (319)
T PRK04452 136 EKDAEVLEKVAEAAEGERCLLGSA--EEDNYKKIAAAAMAYGH--AVIAWSPLDINLAKQLNILLTELGVPRERIVMDPT 211 (319)
T ss_pred CCCHHHHHHHHHHhCCCCCEEEEC--CHHHHHHHHHHHHHhCC--eEEEEcHHHHHHHHHHHHHHHHcCCCHHHEEEeCC
Confidence 5699999998885332 355552 36677777776655543 444442 2233333333333332 56788999
Q ss_pred cccccCChHHHHHHHHHHHHHHHH----cCCcEEEEcCCCC----CC---------------Ccc---cccccCccchhh
Q psy6272 312 QLAVATSVEVTFLAQKMIAARCNK----QGKPFLVVGDILP----DH---------------NVE---EYSDVSIGDMND 365 (547)
Q Consensus 312 DLg~e~~~e~v~~~qk~ii~~c~~----~gKPvi~aTq~Le----~P---------------tra---E~~~~~~~~~~D 365 (547)
=.++.+|.+.....+.+|=..+-+ .|-|+|..+- .+ .- .|+ |+ .-
T Consensus 212 ~~~lg~g~e~~~~~~e~IR~aAl~~d~~l~~P~i~~~~-~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~--------~~ 282 (319)
T PRK04452 212 TGALGYGIEYSYSVMERIRLAALKGDEMLQMPMISGVG-FEAWKAKEAWMPEEEDPEWGPREYRGILWEA--------VT 282 (319)
T ss_pred cccccCCHHHHHHHHHHHHHHHhcCCCcCCCCeEecch-hhhhhccccccccccccccccchhccHHHHH--------HH
Confidence 998888888777777766666644 5567665321 11 00 011 33 44
Q ss_pred HHHHHHhCccEEeeCCcchHHHHH
Q psy6272 366 VNSIVQDGADVVVLTQSEQAHHRV 389 (547)
Q Consensus 366 v~nav~~g~D~vmLsk~Eta~eaV 389 (547)
.+..+..|+|.++|. .+.+++.+
T Consensus 283 a~~~~~~ga~i~vm~-hp~s~~~~ 305 (319)
T PRK04452 283 ALTLLLAGADIFMMR-HPESVKTL 305 (319)
T ss_pred HHHHHHhcCcEEEEe-CHHHHHHH
Confidence 457778999999999 77655433
No 498
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.83 E-value=33 Score=35.40 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=31.5
Q ss_pred hcCCcEEEEEcCCchHHHHHHh----cCCCCCEEEEeCch
Q psy6272 436 KCQAVAIIVITCSGYSAKLVSK----YRPQCPILAVSSLG 471 (547)
Q Consensus 436 ~~~a~aIvv~T~sG~tA~~isk----~RP~~pIiavt~~~ 471 (547)
+..++.+||-|.||.||-.+|. .-|.++.+.+||-.
T Consensus 134 ~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itPI~ 173 (259)
T PRK00561 134 KYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIELN 173 (259)
T ss_pred EEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEeeC
Confidence 4578999999999999999997 56789999999943
No 499
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=37.77 E-value=2.1e+02 Score=31.24 Aligned_cols=125 Identities=11% Similarity=0.039 Sum_probs=71.7
Q ss_pred HHHHHHHcCCcEEEEcCCCCCCCcccccccCccchhhHHHHHHhCccEEeeCCcchHHHHHHHHHHHHHHhhhhhhhHHH
Q psy6272 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408 (547)
Q Consensus 329 ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~~~~~~Dv~nav~~g~D~vmLsk~Eta~eaV~~m~~I~~~aE~~~~~~~~ 408 (547)
+...|+.+|.|+.+. .|..... ..+.+.-..|++.+... + +..++++.+.++.++-. .++....
T Consensus 131 lA~~a~~~G~~~~Iv-----vp~~~~~--------~k~~~i~~~GA~Vi~v~-~-~~~~~~~~a~~~~~~~g-~~~v~~~ 194 (399)
T PRK08206 131 VAWAAQQLGQKAVIY-----MPKGSSE--------ERVDAIRALGAECIITD-G-NYDDSVRLAAQEAQENG-WVVVQDT 194 (399)
T ss_pred HHHHHHHcCCCEEEE-----ECCCCCH--------HHHHHHHHcCCEEEEeC-C-CHHHHHHHHHHHHHHcC-CEEecCc
Confidence 566799999999986 5554444 55566778899988776 3 44466666666554321 1111000
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHHHHhc-----CCcEEEEEcCCchHHHHHHhc-----CC-CCCEEEEeCch
Q psy6272 409 FEDLCALACPPLDPAHSIVIACVNAALKC-----QAVAIIVITCSGYSAKLVSKY-----RP-QCPILAVSSLG 471 (547)
Q Consensus 409 f~~~~~~~~~~~~~~~~ia~aav~~a~~~-----~a~aIvv~T~sG~tA~~isk~-----RP-~~pIiavt~~~ 471 (547)
... .....+....+-....+.|+..++ ..++||+.+-+|.++.-++++ ++ ...|++|-+..
T Consensus 195 -~~~-~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~g 266 (399)
T PRK08206 195 -AWE-GYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQ 266 (399)
T ss_pred -ccc-CcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCC
Confidence 000 000001111222334455566555 368999999999888766542 34 56699998854
No 500
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=37.73 E-value=3e+02 Score=29.44 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=44.9
Q ss_pred ceEEEEecCHHHHhhHHHHHhh-cCEEEEcCCcccccCChHHHHHHHHHHHHHHHHcCCcEEEEcCCCCCCCcccccccC
Q psy6272 281 VLILAKIETLLGMEYMDEIIME-SDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVS 359 (547)
Q Consensus 281 i~IiakIEt~~av~nldeIl~~-~DgImIargDLg~e~~~e~v~~~qk~ii~~c~~~gKPvi~aTq~Le~PtraE~~~~~ 359 (547)
+..++-.=..+++ |.+... .|.+=||-+|+.- ++ +++.+.+.|||+|++|.| .|-+|+
T Consensus 90 i~~~stpfd~~sv---d~l~~~~v~~~KIaS~~~~n------~p-----LL~~~A~~gkPvilStGm---atl~Ei---- 148 (329)
T TIGR03569 90 IEFLSTPFDLESA---DFLEDLGVPRFKIPSGEITN------AP-----LLKKIARFGKPVILSTGM---ATLEEI---- 148 (329)
T ss_pred CcEEEEeCCHHHH---HHHHhcCCCEEEECcccccC------HH-----HHHHHHhcCCcEEEECCC---CCHHHH----
Confidence 4444443333333 333344 6788888888773 22 455577789999999996 466777
Q ss_pred ccchhhHHHHHH-hCcc
Q psy6272 360 IGDMNDVNSIVQ-DGAD 375 (547)
Q Consensus 360 ~~~~~Dv~nav~-~g~D 375 (547)
...+.++. .|.+
T Consensus 149 ----~~Av~~i~~~G~~ 161 (329)
T TIGR03569 149 ----EAAVGVLRDAGTP 161 (329)
T ss_pred ----HHHHHHHHHcCCC
Confidence 77777776 3554
Done!