RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6272
(547 letters)
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric
enzyme that regulates glycolysis through binding of the
substrate, phosphoenolpyruvate, and one or more
allosteric effectors. Like other allosteric enzymes, PK
has a high substrate affinity R state and a low affinity
T state. PK exists as several different isozymes,
depending on organism and tissue type. In mammals,
there are four PK isozymes: R, found in red blood cells,
L, found in liver, M1, found in skeletal muscle, and M2,
found in kidney, adipose tissue, and lung. PK forms a
homotetramer, with each subunit containing three
domains. The T state to R state transition of PK is
more complex than in most allosteric enzymes, involving
a concerted rotation of all 3 domains of each monomer in
the homotetramer.
Length = 480
Score = 287 bits (737), Expect = 3e-91
Identities = 160/506 (31%), Positives = 266/506 (52%), Gaps = 45/506 (8%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEEC 113
T I+ T+G +SV+ +K ++++G+N+ R+ +H S Y +I NV+ A E+
Sbjct: 4 TKIVCTIGPATDSVENLKKLIKAGMNVARMNFSHGSHEYHQSRI-DNVREAAEKTG---- 58
Query: 114 KVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKR 173
A+A++TKG ++RTG + + G ++T + KGT ++
Sbjct: 59 --GPVAIALDTKGPEIRTGLFK---------GGKDISLKAGDKFLVTTDP-AAKKGTKEK 106
Query: 174 LFVDSMELPKRVIPDDIVYIDRN-IKLKVVEKENND-VHCTVIRGGKLMDNQLVTVPRVT 231
++VD L K V P + + +D + LKV+ K+++ + C V+ GG L + V +P
Sbjct: 107 IYVDYKNLTKDVSPGNTILVDDGLLSLKVLSKDDDKTLVCEVLNGGVLGSRKGVNLPGTD 166
Query: 232 FNLPVIADRDKHVVDLI--VREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIET 289
+LP ++++DK DL V + VD+I S V A+ + E+R +L + + I+AKIE
Sbjct: 167 VDLPALSEKDK--ADLRFGVEQGVDMIFASFVRKASDVLEIREVLGEKGKDIKIIAKIEN 224
Query: 290 LLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDIL-- 347
G+ DEI+ SDG+++ R L V E FLAQKM+ A+CN GKP + +L
Sbjct: 225 QEGVNNFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLES 284
Query: 348 ----PDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR-----VDILKEILKK 398
P E SDV+ N+++ DG D V+L+ E A + V + I +
Sbjct: 285 MIYNPRPTRAEVSDVA-------NAVL-DGTDCVMLS-GETAKGKYPVEAVKAMARICLE 335
Query: 399 TESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKY 458
E L + +F ++ L P ++ ++ V AA + A AI+V+T SG +A+LVSKY
Sbjct: 336 AEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAFELGAKAIVVLTTSGRTARLVSKY 395
Query: 459 RPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIIS 518
RP PI+AV+ R L++YR + P+ + P+ W D D R++ A+ E G++
Sbjct: 396 RPNAPIIAVTRNEQTARQLHLYRGVYPVLF-EEPKPGWQEDTDARLKAAVNVAKEKGLLK 454
Query: 519 PGDPLVLINGWRKGAGFTNIMRVVYA 544
GD +V++ GW G+G TN MR++
Sbjct: 455 KGDLVVVVQGWPVGSGSTNTMRILTV 480
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase. This enzyme is a
homotetramer. Some forms are active only in the presence
of fructose-1,6-bisphosphate or similar phosphorylated
sugars [Energy metabolism, Glycolysis/gluconeogenesis].
Length = 473
Score = 230 bits (589), Expect = 2e-69
Identities = 152/497 (30%), Positives = 249/497 (50%), Gaps = 36/497 (7%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIPT-HSSKLYQVEKILKNVKLAIEEVSLEEC 113
T I+ T+G NS +++K +L +G+N+ R+ H S K ++NV+ E
Sbjct: 3 TKIVCTIGPATNSPEMLKKLLDAGMNVARLNFSHGSHEEH-GKRIENVR------EAAEK 55
Query: 114 KVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKR 173
A+ ++TKG ++RTG++ V++ +G +++T + I+ +G +
Sbjct: 56 LGRPVAILLDTKGPEIRTGEIK----------GGPVKLKKGDKVIITTD-DIKGEGDEED 104
Query: 174 LFVDSMELPKRVIPDDIVYIDRN-IKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTF 232
+ VD L K V D + +D I L VV E + V C V+ GG L + V +P
Sbjct: 105 VSVDYKGLTKDVSEGDKILVDDGKISLVVVSVEGDKVICEVLNGGTLKSKKGVNLPGADV 164
Query: 233 NLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDH-VDRVLILAKIETLL 291
+LP ++++DK + V + VD++ S V A + E+R +L + V I+AKIE
Sbjct: 165 DLPALSEKDKKDLKFGVEQGVDMVAASFVRTAEDVLEVREVLGEKGAKDVKIIAKIENQE 224
Query: 292 GMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHN 351
G++ +DEI SDG+++ R L V E +AQK + +CN+ GKP + +L +
Sbjct: 225 GVDNIDEIAEASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQML--DS 282
Query: 352 VEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTESVLWEK 406
+ + + +++DV + + DG D V+L+ E A V ++ +I K+ E L
Sbjct: 283 MIKNPRPTRAEVSDVANAILDGTDAVMLS-GETAKGKYPVEAVKMMAKIAKEAEKALAYL 341
Query: 407 QVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILA 466
F D P +I ++ V AA K A AI+V+T SG +A+L+SKYRP PI+A
Sbjct: 342 TNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLLSKYRPNAPIIA 401
Query: 467 VSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLI 526
V+ V R L +Y + P P D + RV A++ E GI+ GD +V+I
Sbjct: 402 VTPNERVARQLALYWGVFPFLVDEEPS-----DTEARVNKALELLKEKGILKKGDLVVVI 456
Query: 527 NGW--RKGAGFTNIMRV 541
G G G TN +RV
Sbjct: 457 QGGAPIGGVGGTNTIRV 473
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 204 bits (522), Expect = 1e-59
Identities = 147/503 (29%), Positives = 251/503 (49%), Gaps = 47/503 (9%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIPT-HSSKLYQVEKILKNVKLAIEEVSLEEC 113
T I+AT+G S ++++ ++ +G+N++R+ H + +K + NV+ A E++
Sbjct: 7 TKIVATLGPATESEEMLEKLIEAGMNVVRLNFSHGD-HEEHKKRIDNVREAAEKLG---- 61
Query: 114 KVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKR 173
A+ ++ KG ++RTGK + VE+ +G LT + + +G +R
Sbjct: 62 --RPVAILLDLKGPKIRTGKFKGGA----------VELEKGEKFTLTTDDKVG-EGDEER 108
Query: 174 LFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTF 232
+ VD +L K V P D + +D I+L+VVE + + V V+ GG L N+ V +P V
Sbjct: 109 VSVDYKDLAKDVKPGDRILLDDGKIELRVVEVDGDAVITRVLNGGVLSSNKGVNLPGVDL 168
Query: 233 NLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDH-VDRVLILAKIETLL 291
+LP + ++DK + + + VD + +S V A + E+R +L + V I+AKIE
Sbjct: 169 SLPALTEKDKEDLKFGLEQGVDFVALSFVRNAEDVEEVREILAETGGRDVKIIAKIENQE 228
Query: 292 GMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP--D 349
++ +DEII SDG+++ R L V +E + QK I + + GKP + +L
Sbjct: 229 AVDNLDEIIEASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMI 288
Query: 350 HNV----EEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR----VDILKEILKKTES 401
N E SDV+ N+++ DG D V+L+ A V + I K+ E
Sbjct: 289 ENPRPTRAEVSDVA-------NAVL-DGTDAVMLSGETAAGKYPVEAVATMARIAKEAEK 340
Query: 402 VLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQ 461
L + Q+ + P +I +A V+ A K A AI+ +T SG +A+L+SKYRP+
Sbjct: 341 ELPDNQLLRF--RVDPPDSSITEAIALAAVDIAEKLDAKAIVTLTESGRTARLLSKYRPE 398
Query: 462 CPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGD 521
PI+A++ V R L + + PL P D V+ A++ +E G++ GD
Sbjct: 399 APIIALTPNERVARRLALVWGVYPLLVEEKPT-----STDEMVEEAVEKLLESGLVKKGD 453
Query: 522 PLVLINGWRKG-AGFTNIMRVVY 543
+V+ G G G TN ++V+
Sbjct: 454 LVVITAGVPMGTVGTTNTIKVLT 476
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional.
Length = 513
Score = 196 bits (499), Expect = 4e-56
Identities = 132/500 (26%), Positives = 248/500 (49%), Gaps = 35/500 (7%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEEC 113
T+I+ T+G +V+ + ++ +G+NI R +H +K L NV+ A +
Sbjct: 40 THIVCTMGPACKNVETLVKLIDAGMNICRFNFSHGDHESH-KKTLNNVREAAKARP--NA 96
Query: 114 KVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKR 173
+ + ++TKG ++RTG L N + + +G + +T + G
Sbjct: 97 NL---GILLDTKGPEIRTGFL---------KNHKPITLKEGQTLKITTDYTFL--GDETC 142
Query: 174 LFVDSMELPKRVIPDDIVYI-DRNIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTF 232
+ +LP+ V +I+ I D ++ KV+E ++ + V+ + + + + +P V
Sbjct: 143 ISCSYKKLPQSVKVGNIILIADGSLSCKVLEVHDDYIITKVLNNATIGERKNMNLPGVKV 202
Query: 233 NLPVIADRDKH-VVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLL 291
LPVI ++DK+ +++ + D I +S V A+ +R R +L + + I+ KIE +
Sbjct: 203 ELPVIGEKDKNDILNFAIPMGCDFIALSFVQSADDVRLCRQLLGERGRHIKIIPKIENIE 262
Query: 292 GMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHN 351
G+ DEI+ ESDG+++ R L + E FLAQKM+ ++CN GKP + +L +
Sbjct: 263 GLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQML--ES 320
Query: 352 VEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR-----VDILKEILKKTESVLWEK 406
+ + + + DV + V DG D V+L+ E A+ + V+I+ +I + E+ + +
Sbjct: 321 MIKNPRPTRAESTDVANAVLDGTDCVMLS-GETANGKFPVEAVNIMAKICFEAETCIDYR 379
Query: 407 QVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILA 466
++ + P+ ++ + V A A II +T +G +A+L+SKYRP C ILA
Sbjct: 380 VLYHAIHLAVPTPVSVQEAVARSAVETAEDINAKLIIALTETGNTARLISKYRPSCTILA 439
Query: 467 VSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLI 526
+S+ V + L+V R + + D ++ AI E G++ GD + +
Sbjct: 440 LSASPSVVKSLSVARGVTTY------VVNSFQGTDVVIRNAIALAKERGLVESGDSAIAV 493
Query: 527 NGWRKG-AGFTNIMRVVYAP 545
+G ++ AG +N+M+VV P
Sbjct: 494 HGVKEEVAGSSNLMKVVKIP 513
>gnl|CDD|215255 PLN02461, PLN02461, Probable pyruvate kinase.
Length = 511
Score = 184 bits (469), Expect = 7e-52
Identities = 148/512 (28%), Positives = 246/512 (48%), Gaps = 60/512 (11%)
Query: 44 NLDSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVK 102
L + T I+ T+G + SV +++ +LR+G+N+ R +H S Y E L N++
Sbjct: 12 GLPADGLRRPKTKIVCTLGPASRSVPMLEKLLRAGMNVARFNFSHGSHEYHQET-LDNLR 70
Query: 103 LAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTAN 162
A+ + CAV ++TKG ++RTG L G V++ QG I +T +
Sbjct: 71 QAMANTGIL------CAVMLDTKGPEIRTGFLK------DGK---PVQLKQGQEITITTD 115
Query: 163 QLIETKGTVKRLFVDSMELPKRVIPDD-IVYIDRNIKLKVVE--KENNDVHCTVIRGGKL 219
KG + + +L V P I+ D I L V+ E V C L
Sbjct: 116 --YSIKGDENMIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAML 173
Query: 220 MDNQLVTVPRVTFNLPVIADRDKHVVDLI---VREAVDIIIMSSVTGANSIREMRGMLED 276
+ + V +P V +LP + ++DK D++ V +D I +S V + + E+R +L +
Sbjct: 174 GERKNVNLPGVVVDLPTLTEKDKE--DILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGE 231
Query: 277 HVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQ 336
H +L+++K+E G++ D+I+ ESD ++ R L + +E FLAQKM+ +CN
Sbjct: 232 HAKSILLISKVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLA 291
Query: 337 GKPFLVVGDIL------PDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQA----- 385
GKP + +L P E +DV+ N+ V DG D V+L+ E A
Sbjct: 292 GKPVVTATQMLESMIKSPRPTRAEATDVA-------NA-VLDGTDCVMLS-GETAAGAYP 342
Query: 386 HHRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVI 445
V + I ++ E+ L +F+++ A P+ P S+ + V A K +A I+V+
Sbjct: 343 ELAVKTMARICREAEASLDYGALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVL 402
Query: 446 TCSGYSAKLVSKYRPQCPILAV-------SSLGYVC------RHLNVYRNIRPLHYIRNP 492
T G +A+LV+KYRP PIL+V S + C RH +YR + P+ +
Sbjct: 403 TRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSA 462
Query: 493 QADWSMDVDCRVQFAIQHGMEIGIISPGDPLV 524
+A S + ++ AI+H + G+ PGD +V
Sbjct: 463 KATDSESTEEILEAAIEHAKKKGLCKPGDSVV 494
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional.
Length = 454
Score = 183 bits (465), Expect = 8e-52
Identities = 126/464 (27%), Positives = 222/464 (47%), Gaps = 26/464 (5%)
Query: 86 THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDN 145
+H S Y + + NV+ A E+ V A+A++TKG ++RTG VG
Sbjct: 9 SHGSHEYH-QTTINNVRQAAAELG------VNIAIALDTKGPEIRTGLF-----VGGE-- 54
Query: 146 SYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDRNI-KLKVVEK 204
+ +GA +T + KGT + ++D L K V P +YID I L V
Sbjct: 55 ---AVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGGYIYIDDGILILHVQSH 111
Query: 205 ENND-VHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTG 263
E+ + CTV + D + V +P +LP ++ +D + V + VD+I S +
Sbjct: 112 EDEQTLKCTVTNAHTISDRRGVNLPGCDVDLPAVSAKDCADLQFGVEQGVDMIFASFIRS 171
Query: 264 ANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTF 323
A + E+R L ++I+ KIE G++ +D II ESDG+++ R L V E
Sbjct: 172 AEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVV 231
Query: 324 LAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLT--- 380
+AQK++ ++CN GKP + +L + +++DV + V +GAD V+L+
Sbjct: 232 VAQKILISKCNVAGKPVICATQMLESMTYNPRP--TRAEVSDVANAVFNGADCVMLSGET 289
Query: 381 -QSEQAHHRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQA 439
+ + + V + I + +S + E F + L P+ ++ + VN+ + +A
Sbjct: 290 AKGKYPNEVVQYMARICLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKA 349
Query: 440 VAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMD 499
A++V++ +G SA+LV+KYRP CPI+ V++ CR LN+ + + + +
Sbjct: 350 KALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDAERLGHDEGK 409
Query: 500 VDCRVQFAIQHGMEIGIISPGDPLVLINGWRKGAGFTNIMRVVY 543
RV + G + GD +V+++ K G+ N R++
Sbjct: 410 EQ-RVAMGVGFAKSKGYVQSGDLMVVVHADHKVKGYANQTRIIL 452
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional.
Length = 465
Score = 179 bits (457), Expect = 2e-50
Identities = 138/492 (28%), Positives = 238/492 (48%), Gaps = 58/492 (11%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIPT-HSSKLYQVEKILKNVKLAIEEVSLEEC 113
T I+AT+G ++S + ++ ++ +GVN++R+ H S ++ V+ E++ +
Sbjct: 6 TKIVATLGPASDSPENLEKLIEAGVNVVRLNFSHGSHEEHGKRA-ALVR----EIAAKLG 60
Query: 114 KVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKR 173
+ V A+ ++ KG ++R GK + + G L +Q E G +R
Sbjct: 61 RPV--AILLDLKGPKIRVGKFK----------EGKITLKTGDKFTLDTDQKEE--GDKER 106
Query: 174 LFVDSMELPKRVIPDDIVYI-DRNIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTF 232
+ VD LPK V P DI+ + D ++LKVVE + ++V V GG L +N+ + +P
Sbjct: 107 VGVDYKGLPKDVKPGDILLLDDGKLQLKVVEVDGDEVETEVKNGGPLSNNKGINIPGGGL 166
Query: 233 NLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDH-VDRVLILAKIETLL 291
+LP + ++DK + + VD I +S V A + E R +L + I+AKIE
Sbjct: 167 SLPALTEKDKADIKFAAEQGVDYIAVSFVRSAEDVEEARRLLREAGCPHAKIIAKIERAE 226
Query: 292 GMEYMDEIIMESDGVVLNRIQLAVATS-VEVTFLAQKMIAARCNKQGKPFLV-------- 342
++ +DEII SDG+++ R L V EV L QK I + + GKP +
Sbjct: 227 AVDNIDEIIEASDGIMVARGDLGVEIPDEEVPGL-QKKIIRKAREAGKPVITATQMLESM 285
Query: 343 VGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR-----VDILKEILK 397
+ + P E SDV+ N+++ DG D V+L+ E A + V+ + I K
Sbjct: 286 IENPRPTR--AEVSDVA-------NAVL-DGTDAVMLS-GETAAGKYPVEAVEAMARICK 334
Query: 398 KTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAV-AIIVITCSGYSAKLVS 456
E E + L +I ++ + AA + V AI+ +T SG +A+L+S
Sbjct: 335 GAEK---EFSINLSKHRLDRQFDRIDEAIAMSAMYAANHLKGVKAIVALTESGRTARLIS 391
Query: 457 KYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGI 516
++RP PI AV+ R L +YR + P+ + D + D D + A++ +E G+
Sbjct: 392 RFRPGAPIFAVTRDEKTQRRLALYRGVYPVLF------DSAADTDDAAEEALRLLLEKGL 445
Query: 517 ISPGDPLVLING 528
+ GD +V+ +G
Sbjct: 446 VESGDLVVVTSG 457
>gnl|CDD|215409 PLN02765, PLN02765, pyruvate kinase.
Length = 526
Score = 171 bits (436), Expect = 5e-47
Identities = 139/507 (27%), Positives = 237/507 (46%), Gaps = 59/507 (11%)
Query: 54 LTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEE 112
LT I+ T+G + SV++I+ L++G+++ R + Y E L+N+K+A++
Sbjct: 29 LTKIVGTLGPKSRSVEVIEACLKAGMSVARFDFSWGDAEYHQET-LENLKIAVKNTK--- 84
Query: 113 CKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVK 172
CAV ++T G +L +++ + + G + LT +Q E V
Sbjct: 85 ---KLCAVMLDTVGPEL--QVINKTEK--------PISLKAGNTVTLTPDQSKEASSEV- 130
Query: 173 RLFVDSMELPKRVIPDDIVYIDR---------NIKLKVVEKENNDVHCTVIRGGKLMDNQ 223
L ++ L K V P D +++ + ++ L+V E + +DV CTV L +
Sbjct: 131 -LPINFPGLAKAVKPGDTIFVGQYLFTGSETTSVWLEVDEVKGDDVVCTVKNSATLAGSL 189
Query: 224 L-VTVPRVTFNLPVIADRDKHVVDLI-VREAVDIIIMSSVTGANSIREMRGMLEDH-VDR 280
+ V +V +LP ++++DK V+ V +D + +S A +RE R L + +
Sbjct: 190 FTLHVSQVRIDLPTLSEKDKEVISTWGVPNKIDFLSLSYTRHAEDVREAREFLSSLGLSQ 249
Query: 281 VLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPF 340
I AKIE + G+ + DEI+ E+DG++L+R L + E FL QK +CN GKP
Sbjct: 250 TQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPA 309
Query: 341 LV--VGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQ-----AHHRVDILK 393
+V V D + D+ ++ + DV + V DGAD ++L +E + +
Sbjct: 310 VVTRVVDSMTDNLRPTRAEAT-----DVANAVLDGADAILLG-AETLRGLYPVETISTVG 363
Query: 394 EILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAK 453
I + E V + F+ P+ SI + V AA+K +A IIV T SG +A+
Sbjct: 364 RICAEAEKVFNQDLYFKKTVKYVGEPMSHLESIASSAVRAAIKVKASVIIVFTSSGRAAR 423
Query: 454 LVSKYRPQCPILAV------------SSLGYV-CRHLNVYRNIRP-LHYIRNPQADWSMD 499
L++KYRP P+L+V S G R + R + P L R+ S
Sbjct: 424 LIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSAT 483
Query: 500 VDCRVQFAIQHGMEIGIISPGDPLVLI 526
+ ++ A+ HG G+I D +V+
Sbjct: 484 NESVLKVALDHGKAAGVIKSHDRVVVC 510
>gnl|CDD|215802 pfam00224, PK, Pyruvate kinase, barrel domain. This domain of the
is actually a small beta-barrel domain nested within a
larger TIM barrel. The active site is found in a cleft
between the two domains.
Length = 348
Score = 161 bits (409), Expect = 8e-45
Identities = 109/369 (29%), Positives = 187/369 (50%), Gaps = 38/369 (10%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEEC 113
T I+ T+G +SV+ ++ ++++G+N+ R+ +H S Y +I NV+ A E++
Sbjct: 4 TKIVCTIGPATDSVENLEKLIKAGMNVARMNFSHGSHEYHQSRI-DNVREAEEKLGG--- 59
Query: 114 KVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKR 173
A+A++TKG ++RTG D +E+ G +++ + + G ++
Sbjct: 60 ---LVAIALDTKGPEIRTGLFK--------DGKKDIELKAGDKFLVSTDPAYKGAGDKEK 108
Query: 174 LFVDSMELPKRVIPDDIVYIDRN-IKLKVVEKENN-DVHCTVIRGGKLMDNQLVTVPRVT 231
++VD L K V P I+ +D + LKV+EK+++ + V+ GG L + V +P
Sbjct: 109 IYVDYKNLTKDVSPGGIILVDDGVLSLKVLEKDDDKTLVTEVLNGGVLGSRKGVNLPGTD 168
Query: 232 FNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLL 291
+LP ++++DK + V++ VD+I S V A+ + E+R +L + + I+AKIE
Sbjct: 169 VDLPALSEKDKADLRFGVKQGVDMIFASFVRTASDVLEVREVLGEAGKDIQIIAKIENQE 228
Query: 292 GMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDIL---- 347
G+ DEI+ SDG+++ R L + E FLAQKM+ A+CN GKP + +L
Sbjct: 229 GVNNFDEILEASDGIMVARGDLGIEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMI 288
Query: 348 --PDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTE 400
P E SDV+ + V DG D V+L+ E A V + I + E
Sbjct: 289 YNPRPTRAEVSDVA--------NAVLDGTDCVMLS-GETAKGNYPVEAVKAMARICLEAE 339
Query: 401 SVLWEKQVF 409
L + VF
Sbjct: 340 KALPHRNVF 348
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional.
Length = 590
Score = 153 bits (389), Expect = 3e-40
Identities = 143/508 (28%), Positives = 242/508 (47%), Gaps = 63/508 (12%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEEC 113
T I+AT+G + S + ++ ++ +G R+ +H +I KN I E S +
Sbjct: 10 TKIVATIGPASESPEKLRQLIEAGATTARLNFSHGDHEEHGARI-KN----IREASKKLG 64
Query: 114 KVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKG---- 169
K V + + +G ++R G+ G +E+ G +LT+ +++ T+
Sbjct: 65 KTV--GILQDLQGPKIRLGRFE------DG----PIELKTGDEFILTSREVLGTQEKFSV 112
Query: 170 TVKRLFVDSMELPKRVIPDDIVYIDRNIKLKV--VEKENNDVHCTVIRGGKLMDNQLVTV 227
T L D + + R++ DD I+L+V V+K + ++HC V+ GG L + + V
Sbjct: 113 TYDGL-ADEVPVGSRILLDD-----GLIELEVEEVDKADGELHCKVLVGGVLSNKKGVNF 166
Query: 228 PRVTFNLPVIADRDKHVVDLI--VREAVDIIIMSSVTGANSIREMRGMLEDHVD-RVLIL 284
P V+ +LP I ++D+ DLI + + VD I +S V + + E+R ++E+H + I+
Sbjct: 167 PGVSLSLPAITEKDR--EDLIFGLEQGVDWIALSFVRNPSDVLEIRELIEEHNGKHIPII 224
Query: 285 AKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVG 344
AKIE ++ +D I+ DG+++ R L V E L QK + + N+ GKP +
Sbjct: 225 AKIEKQEAIDNIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITAT 284
Query: 345 DIL------PDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHH----RVDILKE 394
+L P E SDV+ N+I+ DG D V+L+ A V +
Sbjct: 285 QMLDSMQRNPRPTRAEASDVA-------NAIL-DGTDAVMLSNETAAGDYPVEAVQTMAT 336
Query: 395 ILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKL 454
I + E L + + + +I A + AL+ A AI+ +T SG +A+
Sbjct: 337 IAVRIEKDLPYRDILSKRPEFTTTITN---AISQAVSHIALQLDAAAIVTLTKSGATARN 393
Query: 455 VSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEI 514
VSKYRP+ PILAV+ V R L + + PL + P D + D AI E
Sbjct: 394 VSKYRPKTPILAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDA------AINVAQES 447
Query: 515 GIISPGDPLVLINGWRKG-AGFTNIMRV 541
G++ GD +V+ G G +G T++M+V
Sbjct: 448 GLLKQGDLVVITAGTLVGESGSTDLMKV 475
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional.
Length = 470
Score = 145 bits (367), Expect = 6e-38
Identities = 134/507 (26%), Positives = 231/507 (45%), Gaps = 63/507 (12%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEEC 113
T I+ T+G S +++ +L +G+N++R+ +H ++I KN++ + + +
Sbjct: 4 TKIVCTIGPKTESEEMLTKLLDAGMNVMRLNFSHGDYAEHGQRI-KNLRNVMSKTGKK-- 60
Query: 114 KVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKR 173
A+ ++TKG ++RT KL + V + G T ++ + G +R
Sbjct: 61 ----AAILLDTKGPEIRTMKL---------EGGNDVSLKAGQTFTFTTDKSV--VGNKER 105
Query: 174 LFVDSMELPKRVIPDDIVYIDRN-IKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTF 232
+ V + + V +D I ++V N+V C V+ G L +N+ V +P V+
Sbjct: 106 VAVTYEGFTADLSVGNTVLVDDGLIGMEVTAITGNEVICKVLNNGDLGENKGVNLPGVSI 165
Query: 233 NLPVIADRDKHVVDLI--VREAVDIIIMSSVTGANSIREMRGMLEDHV-DRVLILAKIET 289
LP +A++DK DLI + VD + S + + + E+R L+ H + + I++KIE
Sbjct: 166 ALPALAEKDKQ--DLIFGCEQGVDFVAASFIRKRSDVLEIREHLKAHGGENIQIISKIEN 223
Query: 290 LLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDIL-- 347
G+ DEI+ SDG+++ R L V VE AQKM+ +CN+ K + +L
Sbjct: 224 QEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDS 283
Query: 348 ----PDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR-----VDILKEILKK 398
P E DV+ N+I+ DG D V+L+ E A + V I+ I ++
Sbjct: 284 MIKNPRPTRAEAGDVA-------NAIL-DGTDAVMLS-GESAKGKYPLEAVSIMATICER 334
Query: 399 TESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKY 458
T+ V+ + L ++ V A K A I+V T G SA+ V KY
Sbjct: 335 TDRVMNSRLESN----NDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARSVRKY 390
Query: 459 RPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEI---- 514
P ILA+++ R L + + + P + A S D R+ G E+
Sbjct: 391 FPDATILALTTNEKTARQLVLSKGVVP--QLVKEIA--STDDFYRL------GKELALQS 440
Query: 515 GIISPGDPLVLINGWRKGAGFTNIMRV 541
G+ GD +V+++G +G TN V
Sbjct: 441 GLAQKGDVVVMVSGALVPSGTTNTASV 467
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional.
Length = 476
Score = 119 bits (301), Expect = 5e-29
Identities = 120/505 (23%), Positives = 223/505 (44%), Gaps = 58/505 (11%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEEC 113
I+AT+G ++S D+I+ ++ +G ++ R+ +H + + K I EV E
Sbjct: 7 VKILATLGPASSSEDMIRKLVEAGADVFRLNFSHGDH----DDHRELYK-RIREVEDETG 61
Query: 114 KVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKR 173
+ + + + +G +LR G+ + V++A G L + + G R
Sbjct: 62 RPI--GILADLQGPKLRLGRFA----------DGKVQLANGQTFRLDVD---DAPGDHDR 106
Query: 174 LFVDSMELPKRVIPDDIVYIDR-NIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTF 232
+ + E+ + P D + +D ++L V + +DV C V+ GG + D + V++P
Sbjct: 107 VSLPHPEIAAALKPGDRLLVDDGKVRLVVEACDGDDVVCRVVEGGPVSDRKGVSLPGTVL 166
Query: 233 NLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLG 292
++ + ++D+ ++ + VD + +S V + E+R ++ RV ++AKIE
Sbjct: 167 SVSALTEKDRADLEFALELGVDWVALSFVQRPEDVEEVRKIIG---GRVPVMAKIEKPQA 223
Query: 293 MEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDIL----- 347
++ ++ I+ SD +++ R L V +E L QK I + GKP +V +L
Sbjct: 224 IDRLEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIE 283
Query: 348 -PDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQA-----HHRVDILKEILKKTES 401
P E SDV+ V DGAD V+L+ +E A V + I+++ E
Sbjct: 284 NPVPTRAEVSDVATA--------VLDGADAVMLS-AETASGKYPVEAVRTMARIIRQVE- 333
Query: 402 VLWEKQVFEDLCALACPPLDPAHSIVIACV--NAALKCQAVAIIVITCSGYSAKLVSKYR 459
+ L P + I+ + A + A++ T SG +A ++ R
Sbjct: 334 ---RDPTYPPLIHAQRPQPEATKRDAISYAARDIAERLDLAALVAYTSSGDTALRAARER 390
Query: 460 PQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISP 519
P PILA++ R L + +H + A D D V+ A + + G
Sbjct: 391 PPLPILALTPNPETARRLAL---TWGVHCVVVDDAR---DTDDMVRRADRIALAEGFYKR 444
Query: 520 GDPLVLINGWRKG-AGFTNIMRVVY 543
GD +V++ G G G TN++R+ Y
Sbjct: 445 GDRVVIVAGVPPGTPGSTNMLRIAY 469
>gnl|CDD|217269 pfam02887, PK_C, Pyruvate kinase, alpha/beta domain. As well as
being found in pyruvate kinase this family is found as
an isolated domain in some bacterial proteins.
Length = 117
Score = 109 bits (274), Expect = 2e-28
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 6/122 (4%)
Query: 423 AHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRN 482
+I + V AA + A AI+V+T SG +A+LVSKYRP PI+AV+ R L +Y
Sbjct: 1 TEAIARSAVEAAKELGAKAIVVLTESGSTARLVSKYRPGAPIIAVTPNERTARRLALYWG 60
Query: 483 IRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKG-AGFTNIMRV 541
+ P+ + S+ D + A++ + G++ GD +V+ G G +G TN ++V
Sbjct: 61 VHPVLGD-----ERSISTDEIIAEALRMAKDAGLVKKGDLVVVTAGVPVGTSGGTNTLKV 115
Query: 542 VY 543
+
Sbjct: 116 IT 117
>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit.
Length = 509
Score = 107 bits (268), Expect = 1e-24
Identities = 111/462 (24%), Positives = 197/462 (42%), Gaps = 49/462 (10%)
Query: 50 RGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIPT-HSSKLYQVEKILKNVKLAIEEV 108
R T ++ T+G + ++ + G+N+ R+ H ++ + +++ V+
Sbjct: 22 RSTRRTKLVCTIGPACCGFEQLEALAMGGMNVARLNMCHGTREWH-RDVIRRVR------ 74
Query: 109 SLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNS---YSVEIAQGANIVLTANQLI 165
L E K AV ++T+G+++ G L S+ D ++V G+ T
Sbjct: 75 RLNEEKGFAVAVMMDTEGSEIHMGDLGGASSAKAEDGEEWTFTVRKFDGSRPEFTIQ--- 131
Query: 166 ETKGTVKRLFVDSMELPKRVIPDDIVYIDRNI-KLKVVEKENNDVHCTVIRGGKLMDNQL 224
V+ + V D + +D + + +V+EK DV C G L+
Sbjct: 132 ----------VNYDGFAEDVKVGDELVVDGGMVRFEVIEKIGPDVKCKCTDPGLLLPRAN 181
Query: 225 VT-------VPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLE-- 275
+T V LP I+ +D +D + E VD I +S V A I+ ++ +
Sbjct: 182 LTFWRDGSLVRERNAMLPTISSKDWLDIDFGISEGVDFIAVSFVKSAEVIKHLKSYIAAR 241
Query: 276 --DHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARC 333
D V+ AKIE+L ++ ++EII SDG ++ R L +E Q+ I C
Sbjct: 242 SRDSDIGVI--AKIESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLC 299
Query: 334 NKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR----- 388
+ KP +V +L ++ EY + ++ DV+ V+ AD ++L+ E A
Sbjct: 300 RQLNKPVIVASQLL--ESMIEYPTPTRAEVADVSEAVRQRADALMLS-GESAMGLYPEKA 356
Query: 389 VDILKEILKKTESVLWEKQVFE--DLCALACPPLDP-AHSIVIACVNAALKCQAVAIIVI 445
+ +L+ + + E E++ E +L L+ D + I + A AI V
Sbjct: 357 LSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMANNLGVDAIFVY 416
Query: 446 TCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLH 487
T G+ A L+S+ RP CPI A + V R LN+ + P
Sbjct: 417 TKHGHMASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFR 458
>gnl|CDD|215334 PLN02623, PLN02623, pyruvate kinase.
Length = 581
Score = 106 bits (266), Expect = 2e-24
Identities = 113/450 (25%), Positives = 208/450 (46%), Gaps = 53/450 (11%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIPTHSSKLYQVEKILKNVKLAIEEVSLEECK 114
T I+ T+G + N+ ++I + +G+N+ R+ +K++ VK E + +
Sbjct: 112 TKIVCTIGPSTNTREMIWKLAEAGMNVARLNMSHGDHASHQKVIDLVK---EYNAQSKDN 168
Query: 115 VVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVK-- 172
V+ A+ ++TKG ++R+G L +P + G ++ I +G + T+ V
Sbjct: 169 VI--AIMLDTKGPEVRSGDLPQPIMLEEGQ-EFTFTIKRG----------VSTEDCVSVN 215
Query: 173 -RLFVDSMELPKRVIPDDIVYIDRNI-KLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRV 230
FV+ +E+ D++ +D + L V K ++ V C V+ GG+L + + V
Sbjct: 216 YDDFVNDVEV------GDMLLVDGGMMSLAVKSKTSDSVKCEVVDGGELKSRRHLNVRGK 269
Query: 231 TFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETL 290
+ LP I ++D + V VD +S V A + E++ L+ + ++ KIE+
Sbjct: 270 SATLPSITEKDWEDIKFGVENKVDFYAVSFVKDAQVVHELKDYLKSCNADIHVIVKIESA 329
Query: 291 LGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDIL--- 347
+ + II SDG ++ R L +E L Q+ I RC GKP +V ++L
Sbjct: 330 DSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESM 389
Query: 348 ---PDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR-----VDILKEILKKT 399
P E SD++I V++GAD V+L+ E AH + V ++ + +T
Sbjct: 390 IVHPTPTRAEVSDIAIA--------VREGADAVMLS-GETAHGKFPLKAVKVMHTVALRT 440
Query: 400 ESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAV--AIIVITCSGYSAKLVSK 457
E+ L E +L H + +A + + +IIV T +G+ A L+S
Sbjct: 441 EATLPEGTTPPNLGQAF-----KNHMSEMFAFHATMMANTLGTSIIVFTRTGFMAILLSH 495
Query: 458 YRPQCPILAVSSLGYVCRHLNVYRNIRPLH 487
YRP I A ++ + + L +Y+ + P++
Sbjct: 496 YRPSGTIFAFTNEKRIQQRLALYQGVCPIY 525
>gnl|CDD|180676 PRK06739, PRK06739, pyruvate kinase; Validated.
Length = 352
Score = 80.0 bits (197), Expect = 3e-16
Identities = 79/351 (22%), Positives = 159/351 (45%), Gaps = 42/351 (11%)
Query: 60 TVGENNNSVDLIKLMLRSGVNILRIP----THSSKLYQVEKILKNVKLAIEEVSLEECKV 115
T+G +N+ + + ++ +G+ I+R+ TH S + I++ VK SL++
Sbjct: 8 TIGPASNNKETLAQLINNGMKIVRLNLSHGTHESH----KDIIRLVK------SLDD--- 54
Query: 116 VTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLF 175
+ + + +G ++R G++ + + G + +L + G+
Sbjct: 55 -SIKILGDVQGPKIRLGEI----------KGEQITLQAGDSFILHTQPV---TGSSTEAS 100
Query: 176 VDSMELPKRV-IPDDIVYIDRNIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTFNL 234
VD + V + I+ D ++L V + + + V GG + ++ V +P L
Sbjct: 101 VDYEGIANDVKVGSRILMNDGEVELIVEKVSTDKIETKVKTGGNISSHKGVNLPGAIVRL 160
Query: 235 PVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGML-EDHVDRVLILAKIETLLGM 293
P I ++DK + ++ E VD I S V + I+E+R + + ++AKIET+ +
Sbjct: 161 PAITEKDKKDIQFLLEEDVDFIACSFVRKPSHIKEIRDFIQQYKETSPNLIAKIETMEAI 220
Query: 294 EYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILP---DH 350
E +I E+DG+++ R L V + L QKM+ CN+ + +L DH
Sbjct: 221 ENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDH 280
Query: 351 NVEEYSDVSIGDMNDVNSIVQDGADVVVLT-QSEQAHHRVDILKEILKKTE 400
++ ++V+ DV V DG + V+L+ +S H ++ + + +E
Sbjct: 281 SIPTRAEVT-----DVFQAVLDGTNAVMLSAESASGEHPIESVSTLRLVSE 326
>gnl|CDD|236178 PRK08187, PRK08187, pyruvate kinase; Validated.
Length = 493
Score = 50.8 bits (122), Expect = 1e-06
Identities = 58/287 (20%), Positives = 113/287 (39%), Gaps = 37/287 (12%)
Query: 48 PVRGVNLTNIMATV-GENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAI 105
P T IM T+ E + D + + G++ RI H + ++ +++ A
Sbjct: 128 PRPAARRTRIMVTLPSEAADDPDFVLRLAERGMDCARINCAHDDPA-AWQAMIGHLRQAE 186
Query: 106 EEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLI 165
C + ++ G ++RTG ++ P G + G + L A
Sbjct: 187 RATG------RRCKILMDLAGPKIRTGAVAGPL--GKT------RLYTGDRLALVAQ--G 230
Query: 166 ETKGTVKRLFVDSMELPK---RVIPDDIVYIDR-NIKLKVVEKENNDVHCTVIR----GG 217
+ + F + LP+ R+ V+ID + +V V G
Sbjct: 231 PPRRIDEEHFQVTCTLPEILARLAVGARVWIDDGKLGARVERVGPGGALLEVTHARPKGL 290
Query: 218 KLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLE-- 275
KL + + P +LP + ++D+ +D + R A D++ S V + ++ L
Sbjct: 291 KLKPEKGLNFPDTALDLPALTEKDRADLDFVARHA-DLVGYSFVQSPGDVEALQAALAAR 349
Query: 276 --DHVDRVLILAKIETLLGMEYMDEIIMESDG-----VVLNRIQLAV 315
D ++ ++ KIET + + E+I+++ G V++ R LAV
Sbjct: 350 RPDDWRKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAV 396
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional.
Length = 608
Score = 41.5 bits (98), Expect = 0.001
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 194 DRNIKLKVVEKENNDVHCTVIR----GGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIV 249
D I VV+ E ++V + G KL + + +P LP + D+D + +
Sbjct: 383 DGKIGAVVVKVEADEVELRITHARPGGSKLKAGKGINLPDSHLPLPALTDKDLEDLAFVA 442
Query: 250 REAVDIIIMSSVTGANSIREMRGMLEDH-VDRVLILAKIETLLGMEYMDEIIME-----S 303
+ A DI+ +S V +R + LE D + ++ KIET E + I++E
Sbjct: 443 KHA-DIVALSFVRSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPR 501
Query: 304 DGVVLNRIQLAV 315
GV++ R LAV
Sbjct: 502 FGVMIARGDLAV 513
>gnl|CDD|202594 pfam03328, HpcH_HpaI, HpcH/HpaI aldolase/citrate lyase family.
This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic
acid aldolase and 4-hydroxy-2-oxovalerate aldolase.
Length = 221
Score = 37.7 bits (88), Expect = 0.009
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 12/88 (13%)
Query: 226 TVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDH-------V 278
V RV +D V+D +++ V A RE
Sbjct: 62 VVVRVNGLDSPFGKQDLAVLDA----GAQGVLVPKVETAEEAREAVSACRYPPKGIRRAN 117
Query: 279 DRVLILAKIETLLGMEYMDEIIMESDGV 306
+LA+IE+ LG+ DE I +G+
Sbjct: 118 GNTCLLAQIESALGVLNADE-IAAVEGL 144
>gnl|CDD|225184 COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport
and metabolism].
Length = 283
Score = 33.8 bits (78), Expect = 0.16
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 245 VDLIVREAVDIIIMSSVTGANSIREMRGML---EDHVDRVLILAKIETLLGMEYMDEIIM 301
+ +VR AVD +++ V A + E+ +L E R +++A IET G+ E I
Sbjct: 73 LAAVVRSAVDGVVLPKVESAADVEELDQLLREAEAAAGREILIALIETARGVL-NAEEIA 131
Query: 302 ESDGVV 307
+ G +
Sbjct: 132 AASGRL 137
>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the
synthesis of UDP-glucose. Prokaryotic UDP-Glucose
Pyrophosphorylase (UGPase) catalyzes a reversible
production of UDP-Glucose and pyrophosphate (PPi) from
glucose-1-phosphate and UTP. UDP-glucose plays pivotal
roles in galactose utilization, in glycogen synthesis,
and in the synthesis of the carbohydrate moieties of
glycolipids , glycoproteins , and proteoglycans. UGPase
is found in both prokaryotes and eukaryotes, although
prokaryotic and eukaryotic forms of UGPase catalyze the
same reaction, they share low sequence similarity.
Length = 267
Score = 32.9 bits (76), Expect = 0.38
Identities = 23/56 (41%), Positives = 28/56 (50%), Gaps = 16/56 (28%)
Query: 234 LPVIADRDKHVVDLIVREAV-----DIIIMSSVTGANSIREMRGMLEDHVDRVLIL 284
LP++ DK V+ IV EAV DIII VTG + +EDH DR L
Sbjct: 26 LPIV---DKPVIQYIVEEAVAAGIEDIII---VTGRG-----KRAIEDHFDRSYEL 70
>gnl|CDD|224131 COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope
biogenesis, outer membrane].
Length = 291
Score = 32.1 bits (74), Expect = 0.68
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 39/130 (30%)
Query: 234 LPVIADRDKHVVDLIVREAV-----DIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIE 288
LP++ DK ++ IV EAV +I+I VTG + +EDH D L
Sbjct: 30 LPIV---DKPLIQYIVEEAVAAGIEEILI---VTGRG-----KRAIEDHFDTSYEL--EN 76
Query: 289 TLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMI-----AARCNK---QGKPF 340
TL + L ++ ++ V ++F+ QK A C K +PF
Sbjct: 77 TLEKRGKREL---------LEEVR-SIPPLVTISFVRQKEPLGLGHAVLCAKPFVGDEPF 126
Query: 341 LVVGDILPDH 350
V+ LPD
Sbjct: 127 AVL---LPDD 133
>gnl|CDD|132866 cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like
phospholipase domain containing protein 6. Bacterial
patatin-like phospholipase domain containing protein 6.
PNPLA6 is commonly known as Neuropathy Target Esterase
(NTE). NTE has at least two functional domains: the
N-terminal domain putatively regulatory domain and the
C-terminal catalytic domain which shows esterase
activity. NTE shows phospholipase activity for
lysophosphatidylcholine (LPC) and phosphatidylcholine
(PC). Exposure of NTE to organophosphates leads to
organophosphate-induced delayed neurotoxicity (OPIDN).
OPIDN is a progressive neurological condition that is
characterized by weakness, paralysis, pain, and
paresthesia. This group includes YCHK and rssA from
Escherichia coli as well as Ylbk from Bacillus
amyloliquefaciens.
Length = 175
Score = 31.1 bits (71), Expect = 1.00
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 89 SKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGK 133
S L + EK+L+ ++ + V++EE + AVA T L+TGK
Sbjct: 76 SGLLKGEKVLEYLREIMGGVTIEELPIPFAAVA-----TDLQTGK 115
>gnl|CDD|203976 pfam08545, ACP_syn_III, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.180, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 80
Score = 29.0 bits (66), Expect = 1.3
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 324 LAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIV--QDGADVVVLTQ 381
A +I + + K LVVG E S I D D ++ V DGA VVL
Sbjct: 16 TAAALIRS---GRAKNVLVVG-------AETLSR--ILDWTDRSTAVLFGDGAGAVVLEA 63
Query: 382 SEQAHHRV 389
+E+ R+
Sbjct: 64 TEEGGARI 71
>gnl|CDD|139606 PRK13486, PRK13486, bifunctional enterobactin receptor/adhesin
protein; Provisional.
Length = 696
Score = 31.5 bits (71), Expect = 1.4
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 422 PAHSIVIACVNAALKCQAVA--IIVITCSGYSAKLVS 456
S+VI C+ + A A +++++ SGY KL +
Sbjct: 5 TLASVVIPCLGFSASSIAAAEDVMIVSASGYEKKLTN 41
>gnl|CDD|105864 PRK12699, flgH, flagellar basal body L-ring protein; Reviewed.
Length = 246
Score = 30.3 bits (68), Expect = 2.2
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 7 PTPVVLLPW--RKPDPLAPPVNQVN-----AAFADRYLNHLEQLNLDSPVRGVNLTNIMA 59
P P V P R PD P +Q N AAF + L D R + T I+
Sbjct: 38 PAPKVQQPMSARPPDLPLIPPSQGNGGIYQAAFDYQGRGRYHPLFEDRRARQIGDTIIVL 97
Query: 60 TVGENNNS 67
+ N S
Sbjct: 98 LNEKTNAS 105
>gnl|CDD|220823 pfam10605, 3HBOH, 3HB-oligomer hydrolase (3HBOH).
D-(-)-3-hydroxybutyrate oligomer hydrolase (also known
as 3HB-oligomer hydrolase) functions in the degradation
of poly-3-hydroxybutyrate (PHB). It catalyzes the
hydrolysis of D(-)-3-hydroxybutyrate oligomers
(3HB-oligomers) into 3HB-monomers.
Length = 689
Score = 30.1 bits (68), Expect = 3.9
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 487 HYIRNPQADWSMDVDCRVQFAI-----QHGMEIG------IISPGDPLVLINGWRKGAG 534
H +NP+ DW D V+FA + G G ++PG+ V+ + G G
Sbjct: 238 HSQQNPEKDWGRDTLQAVEFAFWALNEKFGRRSGNGRTLRTLTPGNTTVIASSVSNGGG 296
>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase.
Length = 409
Score = 29.9 bits (67), Expect = 3.9
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 459 RPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIIS 518
RP PI + + RHL V + P+ W +D+D A Q+ + + II+
Sbjct: 127 RPGFPIYELCA---AFRHLEVR------YVDLLPEKGWEVDLDAVEALADQNTVALVIIN 177
Query: 519 PGDP 522
PG+P
Sbjct: 178 PGNP 181
>gnl|CDD|227876 COG5589, COG5589, Uncharacterized conserved protein [Function
unknown].
Length = 164
Score = 28.4 bits (63), Expect = 7.1
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 386 HHRVDILKEILKKTESVLWEKQVFEDLC-ALACPPLDPAH 424
H +E LK E L EKQV DL ALA L PA
Sbjct: 95 HLPDTAFREALKAFELQL-EKQVLADLVHALARMTLHPAQ 133
>gnl|CDD|217467 pfam03274, Foamy_BEL, Foamy virus BEL 1/2 protein.
Length = 222
Score = 28.6 bits (64), Expect = 8.0
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 8/50 (16%)
Query: 5 QEPTPVVLLP----WRKPDPLAPPVNQVNAAFADRYLNHLEQLNLDSPVR 50
EP P+ P W K L P+ V H ++ P R
Sbjct: 120 HEPMPIWWDPSGKLWMKTGFLRGPLGSVVITCY----KHYDRCQAVDPSR 165
>gnl|CDD|168293 PRK05910, PRK05910, type III secretion system protein; Validated.
Length = 584
Score = 29.0 bits (65), Expect = 8.7
Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 235 PVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIE------ 288
P + ++ V ++ + + + VTG + E++ M++ + +L+L+ E
Sbjct: 511 PDMNEKVVAQVKSLLERSGEGNFRAIVTGCETRFELKKMVDPYFPDLLVLSHSELPEEIP 570
Query: 289 -TLLG 292
+LLG
Sbjct: 571 ISLLG 575
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,015,803
Number of extensions: 2803757
Number of successful extensions: 2620
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2543
Number of HSP's successfully gapped: 63
Length of query: 547
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 445
Effective length of database: 6,413,494
Effective search space: 2854004830
Effective search space used: 2854004830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.2 bits)