RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6272
(547 letters)
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric
enzyme, alternative splicing, glycolysis, magnesium,
metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo
sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A
1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A*
1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A*
2vgg_A* ...
Length = 550
Score = 366 bits (942), Expect = e-121
Identities = 179/545 (32%), Positives = 287/545 (52%), Gaps = 30/545 (5%)
Query: 14 PWRKPDPLAPPVNQVNAAFADRYLNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKL 73
P + Q++AA AD +L H+ +L++DSP T I+ T+G + SV+ +K
Sbjct: 23 PHSEAGTAFIQTQQLHAAMADTFLEHMCRLDIDSPPITARNTGIICTIGPASRSVETLKE 82
Query: 74 MLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTG 132
M++SG+N+ R+ +H + Y E I KNV+ A E + + AVA++TKG ++RTG
Sbjct: 83 MIKSGMNVARLNFSHGTHEYHAETI-KNVRTATESFASDPILYRPVAVALDTKGPEIRTG 141
Query: 133 KLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVY 192
+ G + VE+ +GA + +T + K L++D + K V +Y
Sbjct: 142 LIK-------GSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVEVGSKIY 194
Query: 193 I-DRNIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVRE 251
+ D I L+V +K + + V GG L + V +P +LP ++++D + V +
Sbjct: 195 VDDGLISLQVKQKGADFLVTEVENGGSLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVEQ 254
Query: 252 AVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRI 311
VD++ S + A+ + E+R +L + + I++KIE G+ DEI+ SDG+++ R
Sbjct: 255 DVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARG 314
Query: 312 QLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDIL------PDHNVEEYSDVSIGDMND 365
L + E FLAQKM+ RCN+ GKP + +L P E SDV+
Sbjct: 315 DLGIEIPAEKVFLAQKMMIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVA------ 368
Query: 366 VNSIVQDGADVVVLTQSEQAHHR-----VDILKEILKKTESVLWEKQVFEDLCALACPPL 420
N+++ DGAD ++L+ E A V + I ++ E+ ++ Q+FE+L LA
Sbjct: 369 -NAVL-DGADCIMLS-GETAKGDYPLEAVRMQHLIAREAEAAIYHLQLFEELRRLAPITS 425
Query: 421 DPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVY 480
DP + + V A+ KC + AIIV+T SG SA V++YRP+ PI+AV+ R ++Y
Sbjct: 426 DPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAVTRNPQTARQAHLY 485
Query: 481 RNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKGAGFTNIMR 540
R I P+ Q W+ DVD RV FA+ G G GD ++++ GWR G+GFTN MR
Sbjct: 486 RGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKGDVVIVLTGWRPGSGFTNTMR 545
Query: 541 VVYAP 545
VV P
Sbjct: 546 VVPVP 550
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET:
FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1
c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 328 bits (842), Expect = e-107
Identities = 143/527 (27%), Positives = 246/527 (46%), Gaps = 53/527 (10%)
Query: 37 LNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVE 95
L L LN+ + + T+I+ T+G N+ + + + ++G+NI+R+ +H S Y
Sbjct: 4 LERLTSLNVVAG-SDLRRTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHKS 62
Query: 96 KILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGA 155
I N + + E A+A++TKG ++RTG N I
Sbjct: 63 VI-DNARKSEELYP-----GRPLAIALDTKGPEIRTGTT---------TNDVDYPIPPNH 107
Query: 156 NIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYI-DRNIKLKVVEK-ENNDVHCTV 213
++ T + K ++VD + K + I+Y+ D + +V+E ++ +
Sbjct: 108 EMIFTTDDKYAKACDDKIMYVDYKNITKVISAGRIIYVDDGVLSFQVLEVVDDKTLKVKA 167
Query: 214 IRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLI--VREAVDIIIMSSVTGANSIREMR 271
+ GK+ ++ V +P +LP ++++DK DL V+ V ++ S + AN + +R
Sbjct: 168 LNAGKICSHKGVNLPGTDVDLPALSEKDKE--DLRFGVKNGVHMVFASFIRTANDVLTIR 225
Query: 272 GMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAA 331
+L + V I+ KIE G+ DEI+ +DGV++ R L + QK + A
Sbjct: 226 EVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPEVLAVQKKLIA 285
Query: 332 RCNKQGKPFLVVGDILPDHNVE-----------EYSDVSIGDMNDVNSIVQDGADVVVLT 380
+ N GKP + +L E E SDV N+I+ DGAD V+L+
Sbjct: 286 KSNLAGKPVICATQML-----ESMTYNPRPTRAEVSDVG-------NAIL-DGADCVMLS 332
Query: 381 QSEQAHHR-----VDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAAL 435
E A V + E E + ++D+ P ++ + V A
Sbjct: 333 -GETAKGNYPINAVTTMAETAVIAEQAIAYLPNYDDMRNCTPKPTSTTETVAASAVAAVF 391
Query: 436 KCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQAD 495
+ +A AIIV++ SG + +LVSKYRP CPI+ V+ R ++YR + P + + P +D
Sbjct: 392 EQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRCPRAARFSHLYRGVFPFVFEKEPVSD 451
Query: 496 WSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKGAGFTNIMRVV 542
W+ DV+ R+ F I+ E GI+ GD V I G++ GAG +N ++V
Sbjct: 452 WTDDVEARINFGIEKAKEFGILKKGDTYVSIQGFKAGAGHSNTLQVS 498
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 319 bits (819), Expect = e-103
Identities = 148/527 (28%), Positives = 257/527 (48%), Gaps = 55/527 (10%)
Query: 37 LNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVE 95
L H L++ PV I+ T+G + SV+ +K +++SG+++ R+ +H S Y
Sbjct: 4 LAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARMNFSHGSHEYHQT 63
Query: 96 KILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGA 155
I NV+ A E+ V A+A++TKG ++RTG+ GD + +GA
Sbjct: 64 TI-NNVRQAAAELG------VNIAIALDTKGPEIRTGQFV------GGD----AVMERGA 106
Query: 156 NIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYI-DRNIKLKVVEKENND-VHCTV 213
+T + KGT + ++D L K V P + +YI D + L+V E+ + CTV
Sbjct: 107 TCYVTTDPAFADKGTKDKFYIDYQNLSKVVRPGNYIYIDDGILILQVQSHEDEQTLECTV 166
Query: 214 IRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLI--VREAVDIIIMSSVTGANSIREMR 271
+ D + V +P +LP ++ +D+ DL V + VD+I S + A + ++R
Sbjct: 167 TNSHTISDRRGVNLPGCDVDLPAVSAKDRV--DLQFGVEQGVDMIFASFIRSAEQVGDVR 224
Query: 272 GMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAA 331
L ++I+ KIE G++ +D II ESDG+++ R L V E +AQK++ +
Sbjct: 225 KALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILIS 284
Query: 332 RCNKQGKPFLVVGDILPDHNVE-----------EYSDVSIGDMNDVNSIVQDGADVVVLT 380
+CN GKP + +L E E SDV+ N++ +GAD V+L+
Sbjct: 285 KCNVAGKPVICATQML-----ESMTYNPRPTRAEVSDVA-------NAVF-NGADCVMLS 331
Query: 381 QSEQAHHR-----VDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAAL 435
E A + V + I + +S L E F + L P+ ++ + VN+
Sbjct: 332 -GETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVY 390
Query: 436 KCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQAD 495
+ +A A++V++ +G SA+LV+KYRP CPI+ V++ CR LN+ + + + + +
Sbjct: 391 ETKAKAMVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFF-DADKLG 449
Query: 496 WSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKGAGFTNIMRVV 542
+ RV ++ G + GD V+I+ K G+ N R++
Sbjct: 450 HDEGKEHRVAAGVEFAKSKGYVQTGDYCVVIHADHKVKGYANQTRIL 496
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 293 bits (751), Expect = 6e-93
Identities = 125/555 (22%), Positives = 253/555 (45%), Gaps = 76/555 (13%)
Query: 27 QVNAAFADRYLNHLEQLNLD---SPVRGVNL----TNIMATVGENNNSVDLIKLMLRSGV 79
+A + L +D SP+ ++ T I+ T+G + N+V+ + ++ G+
Sbjct: 20 STSAVMSCTLGKAT-CLGMDKICSPLADNDVTQRKTQIICTIGPSCNNVESLIGLIDKGM 78
Query: 80 NILRIP-THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPS 138
++ R+ +H + + +N++ E + T + ++TKG ++RTG L
Sbjct: 79 SVARLNFSHGDHESHFKTL-QNIR----EAAKARPHS-TVGIMLDTKGPEIRTGML---- 128
Query: 139 NVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYI-DRNI 197
+ +E+ G + +T + G + + LPK V V I D ++
Sbjct: 129 -----EGGKPIELKAGQTLKITTDY--SMLGNSECISCSYSLLPKSVQIGSTVLIADGSL 181
Query: 198 KLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLI---VREAVD 254
+V+E ++ + C V+ + + + + +P +LP+I D+D+H D++ ++ +D
Sbjct: 182 STQVLEIGDDFIVCKVLNSVTIGERKNMNLPGCKVHLPIIGDKDRH--DIVDFALKYNLD 239
Query: 255 IIIMSSVTGANSIREMRGMLEDH-------VDRVLILAKIETLLGMEYMDEIIMESDGVV 307
I +S V ++ R ++ ++ + I++KIE L G+ D I ESDG++
Sbjct: 240 FIALSFVQNGADVQLCRQIISENTQYSNGIPSSIKIISKIENLEGVINFDSICSESDGIM 299
Query: 308 LNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVE-----------EYS 356
+ R L + E F+AQK + ++CN GKP + +L E E +
Sbjct: 300 VARGDLGMEIPPEKIFVAQKCMISKCNVAGKPVVTATQML-----ESMIKSNRPTRAEMT 354
Query: 357 DVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR-----VDILKEILKKTESVLWEKQVFED 411
DV+ N+++ DG+D V+L+ E A+ V+++ + + E+ + ++
Sbjct: 355 DVA-------NAVL-DGSDCVMLS-GETANGAFPFDAVNVMSRVCAQAETCIDYPVLYHA 405
Query: 412 LCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLG 471
+ + P+ +I + V +A A II IT +G +A+L+SKYRP I+A ++
Sbjct: 406 IHSSVPKPVAVPEAIACSAVESAHDVNAKLIITITETGNTARLISKYRPSQTIIACTAKP 465
Query: 472 YVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRK 531
V R L + R ++ + + + A+ E +I GD + ++G ++
Sbjct: 466 EVARGLKIARGVKTYVL------NSIHHSEVVISNALALAKEESLIESGDFAIAVHGVKE 519
Query: 532 G-AGFTNIMRVVYAP 545
G N+M++V P
Sbjct: 520 SCPGSCNLMKIVRCP 534
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 288 bits (739), Expect = 4e-91
Identities = 136/541 (25%), Positives = 259/541 (47%), Gaps = 66/541 (12%)
Query: 26 NQVNAAFADRYLNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP 85
+ + + + L ++ T+I+ T+G SV+ + ++ +G++I R
Sbjct: 19 AAGASMQSAANITLRQILEPNNVNLRSKKTHIVCTLGPACKSVETLVKLIDAGMDICRFN 78
Query: 86 -THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGD 144
+H S E NV +E+ + ++TKG ++RTG L + +
Sbjct: 79 FSHGSHEDHKEMF-NNVL-KAQELRPN----CLLGMLLDTKGPEIRTGFLK------NKE 126
Query: 145 NSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYI-DRNIKLKVVE 203
V + +G+ + L + E G + +LP+ V P +I+ I D ++ KV+E
Sbjct: 127 ----VHLKEGSKLKLVTDY--EFLGDETCIACSYKKLPQSVKPGNIILIADGSVSCKVLE 180
Query: 204 KENNDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLI---VREAVDIIIMSS 260
+ V V+ + + + + +P V +LP+I+++DK+ D++ + + I S
Sbjct: 181 THEDHVITEVLNSAVIGERKNMNLPNVKVDLPIISEKDKN--DILNFAIPMGCNFIAASF 238
Query: 261 VTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVE 320
+ A+ +R +R +L + I+ KIE + G+ + D+I+ ESDG+++ R L + S E
Sbjct: 239 IQSADDVRLIRNLLGPRGRHIKIIPKIENIEGIIHFDKILAESDGIMIARGDLGMEISPE 298
Query: 321 VTFLAQKMIAARCNKQGKPFLVVGDILPDHNVE-----------EYSDVSIGDMNDVNSI 369
FLAQK++ ++CN QGKP + +L E E +DV+ N++
Sbjct: 299 KVFLAQKLMISKCNLQGKPIITATQML-----ESMTKNPRPTRAEVTDVA-------NAV 346
Query: 370 VQDGADVVVL---TQS----EQAHHRVDILKEILKKTESVLWEKQVFEDLCALACPPLDP 422
+ DG D V+L T +A V I+ +I + E+ + K +++ L P+
Sbjct: 347 L-DGTDCVMLSGETAGGKFPVEA---VTIMSKICLEAEACIDYKLLYQSLVNAIETPISV 402
Query: 423 AHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRN 482
++ + V A QA II +T +GY+A+L++KY+P C ILA+S+ + LNV+R
Sbjct: 403 QEAVARSAVETAESIQASLIIALTETGYTARLIAKYKPSCTILALSASDSTVKCLNVHRG 462
Query: 483 IRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKG-AGFTNIMRV 541
+ + D ++ AI+ + + GD ++ I+G ++ +G TN+M+V
Sbjct: 463 VTCIKV------GSFQGTDIVIRNAIEIAKQRNMAKVGDSVIAIHGIKEEVSGGTNLMKV 516
Query: 542 V 542
V
Sbjct: 517 V 517
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 287 bits (737), Expect = 5e-91
Identities = 133/540 (24%), Positives = 252/540 (46%), Gaps = 66/540 (12%)
Query: 27 QVNAAFADRYLNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP- 85
+ N F ++ + + + + T I+ T+G +VD + M+ +G+N+ R+
Sbjct: 11 RENLYFQGIRMSQILEPRSEEDWT-AHRTRIVCTMGPACWNVDTLVKMIDAGMNVCRLNF 69
Query: 86 THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDN 145
+H + +N++ A+++ A+ ++TKG ++RTG L +
Sbjct: 70 SHGDHETHARTV-QNIQEAMKQRP-----EARLAILLDTKGPEIRTGFLK---------D 114
Query: 146 SYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYI-DRNIKLKVVEK 204
+ + QGA + + + G + LP+ V P + + I D ++ +KVVE
Sbjct: 115 HKPITLQQGATLKIVTDY--NLIGDETTIACSYGALPQSVKPGNTILIADGSLSVKVVEV 172
Query: 205 ENNDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLI---VREAVDIIIMSSV 261
++ V + + + + +P V LPVI ++DKH D++ + + I S V
Sbjct: 173 GSDYVITQAQNTATIGERKNMNLPNVKVQLPVIGEKDKH--DILNFGIPMGCNFIAASFV 230
Query: 262 TGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEV 321
A+ +R +RG+L + I+ KIE + G+ DEI+ E+DG+++ R L + E
Sbjct: 231 QSADDVRYIRGLLGPRGRHIRIIPKIENVEGLVNFDEILAEADGIMIARGDLGMEIPPEK 290
Query: 322 TFLAQKMIAARCNKQGKPFLVVGDILPDHNVE-----------EYSDVSIGDMNDVNSIV 370
FLAQKM+ A+CN GKP + +L E E +DV+ N+++
Sbjct: 291 VFLAQKMMIAKCNVVGKPVITATQML-----ESMIKNPRPTRAEAADVA-------NAVL 338
Query: 371 QDGADVVVL---TQS----EQAHHRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPA 423
DG D V+L T + V+ + I + E+ + ++ +C PP+
Sbjct: 339 -DGTDCVMLSGETANGEFPVIT---VETMARICYEAETCVDYPALYRAMCLAVPPPISTQ 394
Query: 424 HSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNI 483
++ A V A A I+ +T +G +A+L++KYRP PILA+S+ +HL V R +
Sbjct: 395 EAVARAAVETAECVNAAIILALTETGQTARLIAKYRPMQPILALSASESTIKHLQVIRGV 454
Query: 484 RPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKG-AGFTNIMRVV 542
+ D ++ AI E +++ G+ +V ++G ++ AG +N+++V+
Sbjct: 455 TTMQV------PSFQGTDHVIRNAIVVAKERELVTEGESIVAVHGMKEEVAGSSNLLKVL 508
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 284 bits (729), Expect = 3e-90
Identities = 127/510 (24%), Positives = 224/510 (43%), Gaps = 69/510 (13%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEEC 113
T I+ T+G S +++ ML +G+N++R+ +H ++I +N++ + +
Sbjct: 4 TKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRI-QNLRNVMSKTG---- 58
Query: 114 KVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKR 173
T A+ ++TKG ++RT KL + V + G T ++ + G +
Sbjct: 59 --KTAAILLDTKGPEIRTMKL---------EGGNDVSLKAGQTFTFTTDKSVI--GNSEM 105
Query: 174 LFVDSMELPKRVIPDDIVYI-DRNIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTF 232
+ V + + V + D I ++V E N V C V+ G L +N+ V +P V+
Sbjct: 106 VAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSI 165
Query: 233 NLPVIADRDKHVVDLI--VREAVDIIIMSSVTGANSIREMRGMLEDHVDR-VLILAKIET 289
LP +A++DK DLI + VD + S + + + E+R L+ H + I++KIE
Sbjct: 166 ALPALAEKDKQ--DLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIEN 223
Query: 290 LLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPD 349
G+ DEI+ SDG+++ R L V VE AQKM+ +C + K + +L
Sbjct: 224 QEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMML-- 281
Query: 350 HNVE-----------EYSDVSIGDMNDVNSIVQDGADVVVL---TQS----EQAHHRVDI 391
+ E DV+ N+I+ DG D V+L + +A V I
Sbjct: 282 ---DSMIKNPRPTDAEAGDVA-------NAIL-DGTDAVMLSGESAKGKYPLEA---VSI 327
Query: 392 LKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYS 451
+ I ++T+ V+ + F + L ++ V A K A I+V T G S
Sbjct: 328 MATICERTDRVMNSRLEFNN----DNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKS 383
Query: 452 AKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHG 511
A+ V KY P ILA+++ L + + + P D + +
Sbjct: 384 ARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLV------KEITSTDDFYRLGKELA 437
Query: 512 MEIGIISPGDPLVLINGWRKGAGFTNIMRV 541
++ G+ GD +V+++G +G TN V
Sbjct: 438 LQSGLAHKGDVVVMVSGALVPSGTTNTASV 467
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 276 bits (708), Expect = 1e-85
Identities = 127/535 (23%), Positives = 243/535 (45%), Gaps = 71/535 (13%)
Query: 33 ADRYLNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKL 91
+ + +H + + T I+ T+G + S ++I+ ++ +G+N+ R+ +H S
Sbjct: 3 SSHHHHHHSSGLVPRGSHMMRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHE 62
Query: 92 YQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEI 151
+I ++ + + A+ ++TKG ++RT + +E+
Sbjct: 63 EHKGRI-DTIRKVAKRLD------KIVAILLDTKGPEIRTHNMKDGI----------IEL 105
Query: 152 AQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYI-DRNIKLKV--VEKENND 208
+G ++++ N E +GT ++ V L V + + D I+L+V ++ +
Sbjct: 106 ERGNEVIVSMN---EVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKE 162
Query: 209 VHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLI--VREAVDIIIMSSVTGANS 266
V C ++ G+L + + V +P V +LP I ++D D+ ++E VD I S V +
Sbjct: 163 VKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAE--DIRFGIKENVDFIAASFVRRPSD 220
Query: 267 IREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQ 326
+ E+R +LE+ + + KIE G++ ++EI+ SDG+++ R + V E + Q
Sbjct: 221 VLEIREILEEQKANISVFPKIENQEGIDNIEEILEVSDGLMVARGDMGVEIPPEKVPMVQ 280
Query: 327 KMIAARCNKQGKPFLVVGDILPDHNVE-----------EYSDVSIGDMNDVNSIVQDGAD 375
K + +CNK GKP + +L + E SDV+ N+I DG D
Sbjct: 281 KDLIRQCNKLGKPVITATQML-----DSMQRNPRATRAEASDVA-------NAIY-DGTD 327
Query: 376 VVVL---TQS----EQAHHRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVI 428
V+L T + E+A V ++ I E+ K++ D L ++I I
Sbjct: 328 AVMLSGETAAGLYPEEA---VKTMRNIAVSAEAAQDYKKLLSDRTKL--VETSLVNAIGI 382
Query: 429 ACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHY 488
+ + AL AI+ T SG +A+ +SKYRP I+AV+ R ++ ++P+
Sbjct: 383 SVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVK 442
Query: 489 IRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKG-AGFTNIMRVV 542
D + A+ +E G ++ GD +++ G G G TN+M++
Sbjct: 443 ------KGRKSTDALLNNAVATAVETGRVTNGDLIIITAGVPTGETGTTNMMKIH 491
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 254 bits (652), Expect = 1e-77
Identities = 139/509 (27%), Positives = 240/509 (47%), Gaps = 62/509 (12%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIP-THSSKLYQVEKILKNVKLAIEEVSLEEC 113
T I++T+G + SVD + ++ +G+N+ R+ +H +I N++ A +
Sbjct: 5 TKIVSTIGPASESVDKLVQLMEAGMNVARLNFSHGDHEEHGRRI-ANIREAAKRTG---- 59
Query: 114 KVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKR 173
T A+ ++TKG ++RT + + +E+ +G+ +V++ + E GT ++
Sbjct: 60 --RTVAILLDTKGPEIRTHNMENGA----------IELKEGSKLVISMS---EVLGTPEK 104
Query: 174 LFVDSMELPKRVIPDDIVYI-DRNIKLKV--VEKENNDVHCTVIRGGKLMDNQLVTVPRV 230
+ V L V + + D I L+V V+K+ ++ TV+ GG L + + V VP V
Sbjct: 105 ISVTYPSLIDDVSVGAKILLDDGLISLEVNAVDKQAGEIVTTVLNGGVLKNKKGVNVPGV 164
Query: 231 TFNLPVIADRDKHVVDLI--VREAVDIIIMSSVTGANSIREMRGMLEDHV-DRVLILAKI 287
NLP I ++D+ D++ +R+ +D I S V A+ + E+R +LE H + I+AKI
Sbjct: 165 KVNLPGITEKDRA--DILFGIRQGIDFIAASFVRRASDVLEIRELLEAHDALHIQIIAKI 222
Query: 288 ETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDIL 347
E G+ +DEI+ +DG+++ R L V E L QK++ + N GKP + +L
Sbjct: 223 ENEEGVANIDEILEAADGLMVARGDLGVEIPAEEVPLIQKLLIKKSNMLGKPVITATQML 282
Query: 348 PDHNVE-------EYSDVSIGDMNDVNSIVQDGADVVVLTQS-EQAHHR-----VDILKE 394
D E SDV+ N+I DG D V+L S E A + V + +
Sbjct: 283 -DSMQRNPRPTRAEASDVA-------NAIF-DGTDAVML--SGETAAGQYPVEAVKTMHQ 331
Query: 395 ILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKL 454
I +TE L + + +I + + AL AI+ T SG + ++
Sbjct: 332 IALRTEQALEHRDILSQRTKE--SQTTITDAIGQSVAHTALNLDVAAIVTPTVSGKTPQM 389
Query: 455 VSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEI 514
V+KYRP+ PI+AV+S V R L + + D + A+ +
Sbjct: 390 VAKYRPKAPIIAVTSNEAVSRRLALVWGVYTKEA------PHVNTTDEMLDVAVDAAVRS 443
Query: 515 GIISPGDPLVLINGWRKG-AGFTNIMRVV 542
G++ GD +V+ G G G TN+M+V
Sbjct: 444 GLVKHGDLVVITAGVPVGETGSTNLMKVH 472
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 190 bits (484), Expect = 1e-54
Identities = 92/511 (18%), Positives = 190/511 (37%), Gaps = 92/511 (18%)
Query: 55 TNIMATVGENNNSVDLIKLM-LRSGVNILRI----PTHSSKLYQVEKILKNVKLAIEEVS 109
T +AT+G + + + +L+ V+ +RI + + +V+ ++ V+ + +
Sbjct: 17 TKRVATLGPSTDVLRPDELIKFLDLVDGVRINLAHASPN----EVKFRIEAVRSYEKAKN 72
Query: 110 LEECKVVTCAVAI--ETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIET 167
+A+ + KG +R G S + + +G +
Sbjct: 73 R--------PLAVIVDLKGPSIRVGSTS------------PINVQEGEVVKFKL----SD 108
Query: 168 KGTVKRLFVDSMELPKRVIPDDIVYI-DRNIKLKVVEKENNDVHCTVIRGGKLMDNQLVT 226
K + V + V +D++ + D ++LKV ++ + G + + +
Sbjct: 109 KSDGTYIPVPNKAFFSAVEQNDVILMLDGRLRLKVTNTGSDWIEAVAESSGVITGGKAIV 168
Query: 227 VPRVTFNLPVIADRDKHVVDLI----VREAVDIIIMSSVTGANSIREMRGMLEDHVDRVL 282
V +++ A+ D L +R+ +D + +S + +R +L + +
Sbjct: 169 VEGKDYDISTPAEEDVE--ALKAISPIRDNIDYVAISLAKSCKDVDSVRSLLTELGFQSQ 226
Query: 283 ILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLV 342
+ KIET + ++E++ SD VV+ R L + ++ + Q+ I K GKP V
Sbjct: 227 VAVKIETKGAVNNLEELVQCSDYVVVARGDLGLHYGLDALPIVQRRIVHTSLKYGKPIAV 286
Query: 343 VGDILPDHNVE-------EYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR-----VD 390
+L D E +DV + G D + LT +E A + V
Sbjct: 287 ATQLL-DSMQSSPIPTRAEINDVF-------TTAS-MGVDSLWLT-NETASGKYPLAAVS 336
Query: 391 ILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGY 450
L IL E + + + + + V A A I+V + SG
Sbjct: 337 WLSRILMNVEYQIPQSPLLQ----------NSRDRFAKGLVELAQDLGA-NILVFSMSGT 385
Query: 451 SAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQH 510
A+ ++K+RP+ + + V R L++ + PL+ P ++ ++ +
Sbjct: 386 LARRIAKFRPRGVVYVGTPNVRVARSLSIVWALEPLYI---PAENYEEGLEKLISLK--- 439
Query: 511 GMEIGIISPGDPLVLINGWRKGAGFTNIMRV 541
P V G R G + ++V
Sbjct: 440 --------GTTPFVATYGIR---GGVHSVKV 459
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.3 bits (158), Expect = 3e-11
Identities = 75/636 (11%), Positives = 158/636 (24%), Gaps = 220/636 (34%)
Query: 5 QEPTPVV---LLPW---RKPDPLAPPVNQVNAAFADRYLNHLEQLNLDSPVRGVNLTNIM 58
V L W K + V +++ + ++N +M
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQE------EMV-----QKFVEEVLRINYKF---------LM 95
Query: 59 ATVGENNNSVDLIKLMLRSGVNILRIPTHSSKLYQV--EKILKNVKLAIEEVSLEE---- 112
+ + ++ M + L Y V + ++ A+ E+ +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 113 -----C-KVVTCAVAIETKGTQ---------LRTGKLSRPSNV--------GHGDNSYSV 149
K + Q L + P V D +++
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215
Query: 150 EIAQGANIVLTANQLIETKGTVKRLFVDSMELPKR-VIPDDIVYIDRNIKLKVVEKENND 208
+NI L + + + ++RL S ++ + V + +
Sbjct: 216 RSDHSSNIKLRIHSI---QAELRRLLK-SKPYENCLLVLLN-VQ-NAKA-WNAF-----N 263
Query: 209 VHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIR 268
+ C + L+T T R K V D + I + + +
Sbjct: 264 LSCKI----------LLT----T--------RFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 269 EMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKM 328
E++ +L K L D L R + T+ +
Sbjct: 302 EVKS----------LLLKY---LDCRPQD----------LPR--EVLTTNP----RRLSI 332
Query: 329 IAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR 388
IA + G + + V + + + +I++ + + VL +E
Sbjct: 333 IAESI-RDG----------LATW-DNWKHV---NCDKLTTIIE--SSLNVLEPAEYRKMF 375
Query: 389 VD--ILKE---ILKKTESVLWEKQVFED----------------------------LCAL 415
+ I S++W + D L
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 416 ACPPLDPA--HSIVIACVNAALKCQAVAIIVITCSGYSAK-------------------- 453
+ H ++ N + +I Y
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 454 -------LVSKYRPQC-PILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQ 505
L K R A S+ + L Y+ YI + + V+ +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-----YICDNDPKYERLVNAILD 550
Query: 506 FAIQHGMEIGIISPGDPLVLINGWRKGAGFTNIMRV 541
F + + I S +T+++R+
Sbjct: 551 FLPKIEENL-ICSK---------------YTDLLRI 570
Score = 40.2 bits (93), Expect = 0.002
Identities = 28/178 (15%), Positives = 55/178 (30%), Gaps = 35/178 (19%)
Query: 350 HNVEEYSDVSIGDMN-DVNSIVQDGADVVVLTQSEQAHHRVDILKEILKKTE--SVLWEK 406
H+ + D G+ I+ D V + D+ K IL K E ++ K
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFV--DNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 407 QVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILA 466
L L +V V L+ Y L+S + + +
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLR-----------INYKF-LMSPIKTEQRQPS 106
Query: 467 VSSLGYVCRH------------LNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGM 512
+ + Y+ + NV R ++P +R +++ + + G+
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSR-LQPYLKLRQ----ALLELR-PAKNVLIDGV 158
Score = 38.7 bits (89), Expect = 0.005
Identities = 51/299 (17%), Positives = 93/299 (31%), Gaps = 81/299 (27%)
Query: 232 FNLPVIADRD-KHVVDL----IVREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAK 286
F + + D K V D+ + +E +D IIMS D V L L
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK---------------DAVSGTLRL-- 67
Query: 287 IETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDI 346
TLL +E++ + VL FL I +
Sbjct: 68 FWTLL--SKQEEMVQKFVEEVLRI---------NYKFLMSP-IKTEQRQ----------- 104
Query: 347 LPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRV-DILKEILKKTESVLWE 405
P Y + ND + +V Q + ++ L E L+ ++VL +
Sbjct: 105 -PSMMTRMYIEQRDRLYNDNQVFAKY--NV----SRLQPYLKLRQALLE-LRPAKNVLID 156
Query: 406 ------KQVFEDLCALAC--PPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSK 457
K + C + I +N C + ++ ++
Sbjct: 157 GVLGSGKTW---VALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKLLYQIDPN 212
Query: 458 YRPQC-----PILAVSSLGYVCRHL---NVYRN---IRPLHYIRNPQADW-SMDVDCRV 504
+ + L + S+ R L Y N + L ++N +A W + ++ C++
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKA-WNAFNLSCKI 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 8e-09
Identities = 84/592 (14%), Positives = 155/592 (26%), Gaps = 249/592 (42%)
Query: 135 SRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDD----- 189
+RP + HG + + + A+QL E F + P D
Sbjct: 6 TRPLTLSHGSLEHVLLVP--TASFFIASQLQEQ-------FNKILPEPTEGFAADDEPTT 56
Query: 190 --------IVYIDRNIK----------LKVVEKE-------NNDVHCTVIRGGKLMDNQL 224
+ Y+ ++ L + E ND+H
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA------------- 103
Query: 225 VTVPRVTFNLPVIADRDKHVVDLIVR---EAVDIIIMSSVTGANSIREMRGMLEDHVDRV 281
+ L D +++ A + +NS L V
Sbjct: 104 -----LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA------LFRAVGEG 152
Query: 282 LILAKIETLLG-----MEYMDEIIMESDGVVLNRIQLAVATSVE--VTFLAQKMIA-ARC 333
A++ + G +Y +E L + V + F A+ + R
Sbjct: 153 --NAQLVAIFGGQGNTDDYFEE---------LRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 334 NKQGKPFLVVG-DIL---------PDHNVEEYSDVS---IG----------------DMN 364
+ G +IL PD + +S IG
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 365 DVNSIVQ----DGADVVV--------------------LT-------QSEQAHHRVDILK 393
++ S ++ +V +T + +A+ +
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPP 321
Query: 394 EILKKTE-----------SV--LWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAV 440
IL+ + S+ L ++QV +D L + I+ VN A
Sbjct: 322 SILEDSLENNEGVPSPMLSISNLTQEQV-QDYVNKTNSHLPAGKQVEISLVNGAKN---- 376
Query: 441 AIIVITCSGYSAKLV----------------------SKYRPQC-----PI--------- 464
+V++ G L S+ + + P+
Sbjct: 377 --LVVS--GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 465 ----------LAVSSLGYVCRHLN--VY-----RNIRPLHY----------IRNPQADWS 497
L +++ + + + VY ++R L IR P W
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLP-VKW- 490
Query: 498 MDVDCRVQFAIQHGMEIGIISPGD-----PLVLINGWRKGAGFTNIMRVVYA 544
+ QF H ++ G PG L N + G G +RV+ A
Sbjct: 491 ---ETTTQFKATHILDFG---PGGASGLGVLTHRN--KDGTG----VRVIVA 530
Score = 45.4 bits (107), Expect = 4e-05
Identities = 50/295 (16%), Positives = 91/295 (30%), Gaps = 101/295 (34%)
Query: 33 ADRYLNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKL-------MLRSGVNILRIP 85
AD + + G ++ +I+ NN V+L +R + +
Sbjct: 1649 ADNHF--KDTY-------GFSILDIV-----INNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 86 THSSKLYQVEKILKNVKLAIEEVSLE----ECKVVTCAVAIETKGTQ------------- 128
T + EKI K + + T+ TQ
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS--------ATQFTQPALTLMEKAAFED 1746
Query: 129 LRT-GKLSRPSNV-GHGDNS---YS--------VEIAQGANIV----LTANQLIETKGTV 171
L++ G + + GH S Y+ + I +V +T + + +
Sbjct: 1747 LKSKGLIPADATFAGH---SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP-RDEL 1802
Query: 172 KRLFVDSMEL-PKRVIPDDIVYIDRNIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRV 230
R + + P RV + VVE+ LV + V
Sbjct: 1803 GRSNYGMIAINPGRVAAS----FSQEALQYVVERVGKR------------TGWLVEI--V 1844
Query: 231 TFNLP----VIA------DRDKHVVDLIVREAVDII-IMSSVTGANSIREMRGML 274
+N+ V A D +V++ I + +DII + S+ S+ E+ G L
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSL----SLEEVEGHL 1895
Score = 41.6 bits (97), Expect = 7e-04
Identities = 63/367 (17%), Positives = 115/367 (31%), Gaps = 135/367 (36%)
Query: 12 LLPW-----RKPD-------PLAPPVNQVNAAFADRYLNHLEQLNLDSP----------- 48
+L W PD P++ P+ V A Y+ + L +P
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGV-IQLA-HYVVTAKLLGF-TPGELRSYLKGAT 271
Query: 49 --VRGVNLTNIMATV------GEN--NNSVDLIKLMLRSGVNILRI-PTHSSKLYQVEKI 97
+G+ + A E+ + I ++ GV P S +E
Sbjct: 272 GHSQGL----VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 98 LKNVK------LAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEI 151
L+N + L+I ++ E+ ++ + + H VEI
Sbjct: 328 LENNEGVPSPMLSISNLTQEQ---------VQDYVNKTNS----------HLPAGKQVEI 368
Query: 152 A--QGA-NIVLTANQLIETKGTVKRLFVDSMELPKRVIPDD-----IVYIDRNIKLKVVE 203
+ GA N+V++ G + L+ ++ L K P I + +R KLK
Sbjct: 369 SLVNGAKNLVVS--------GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER--KLKFS- 417
Query: 204 KENND-------VHCTVIRGGKLMDNQLVTVPRVTFN-----LPVIADRD---------- 241
N H ++ + N+ + V+FN +PV D
Sbjct: 418 ---NRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
Query: 242 --KHVVDLIVREAVD--IIIMSSVT-------GANS--------IREMRGMLEDHVDRVL 282
+ +VD I+R V T G S ++ G+ RV+
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGV------RVI 528
Query: 283 ILAKIET 289
+ ++
Sbjct: 529 VAGTLDI 535
Score = 38.5 bits (89), Expect = 0.007
Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 64/195 (32%)
Query: 292 GME-Y------------MDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGK 338
GM+ Y D ++ G + I + ++ + F +K R N
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA- 1690
Query: 339 PFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHRVDILKEILKK 398
++ + + D ++ ++ ++N+ ++ ++ K +L
Sbjct: 1691 ---MIFETIVDGKLK--TEKIFKEINEHSTSYTFRSE-----------------KGLLSA 1728
Query: 399 TES-----VLWEKQVFEDLCALACPPLDPA---HSIVIACV--NAALKCQAVAIIVITCS 448
T+ L EK FEDL + P D HS + AAL A +
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS-----LGEYAALASLADVM------ 1777
Query: 449 GYS----AKLVSKYR 459
S ++V YR
Sbjct: 1778 --SIESLVEVV-FYR 1789
Score = 35.8 bits (82), Expect = 0.045
Identities = 75/394 (19%), Positives = 122/394 (30%), Gaps = 139/394 (35%)
Query: 69 DLIKLMLRSGVNILRIPTHSSKLYQ----VEKILKNVK-------LAIEEVSLE------ 111
DLIK + ++R + K++ + + L+N L +S
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 112 -ECKVVTCAVAIETKGTQLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGT 170
VVT K G+L R G + +QG ++TA I +
Sbjct: 246 LAHYVVTA------KLLGFTPGEL-RSYLKG------ATGHSQG---LVTA-VAIAETDS 288
Query: 171 -----------VKRLF---VDSMEL-PKRVIPDDIVYIDRNIKLKVVEKENNDVHCT--- 212
+ LF V E P +P I+ ENN+ +
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDS---------LENNEGVPSPML 339
Query: 213 VIRGGKLMDNQLVT-VPRVTFNLPVIADRDKHV-VDLI--VREAVDIIIMSSVTGANSIR 268
I L Q+ V + +LP K V + L+ + V V+G +
Sbjct: 340 SISN--LTQEQVQDYVNKTNSHLP----AGKQVEISLVNGAKNLV-------VSG--PPQ 384
Query: 269 EMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRI---QLAVATSVEVTFLA 325
+ G+ L L K + G +D+ +RI + + S FL
Sbjct: 385 SLYGL-------NLTLRKAKAPSG---LDQ----------SRIPFSERKLKFSNR--FLP 422
Query: 326 QKMIAARCNKQGKPF----------LVVGDILPDHNVE-EYSDVSIGDMNDVNSIVQDGA 374
+A+ PF L+ D L +NV D+ I V DG+
Sbjct: 423 ---VAS-------PFHSHLLVPASDLINKD-LVKNNVSFNAKDIQI----PVYDTF-DGS 466
Query: 375 DVVVLTQSEQAHHRVDILKEILKKTESVLWEKQV 408
D+ + I+ I+ V WE
Sbjct: 467 DL----RVLSGSISERIVDCII--RLPVKWETTT 494
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.012
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 15/44 (34%)
Query: 393 KEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALK 436
K+ LKK ++ L +++ D A PA +A + A ++
Sbjct: 19 KQALKKLQASL---KLYADDSA-------PA----LA-IKATME 47
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote
structure initiative, joint center for structural
genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3
Length = 341
Score = 35.3 bits (81), Expect = 0.041
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 49 VRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIPTH 87
RG NL + N + M + N +RIP
Sbjct: 20 WRGFNLLEAFSIKSTGNFKEEDFLWMAQWDFNFVRIPMC 58
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Length = 316
Score = 31.8 bits (73), Expect = 0.57
Identities = 6/65 (9%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 245 VDLIVR--EAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIME 302
+ ++ D +++ A ++ + ++ ++ IE++ G+ ++ I
Sbjct: 120 IHALLECGSLPDYLVLPKTESAAHLQILDRLMMFAGSDTRLIGIIESVRGLNAVESIAAA 179
Query: 303 SDGVV 307
+ +
Sbjct: 180 TPKLA 184
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel,
hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga
maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A
3azs_A* 3azr_A* 3azt_A*
Length = 317
Score = 31.4 bits (71), Expect = 0.61
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Query: 50 RGVNLTNIMATVGENNNSV----DLIKLMLRSGVNILRIPTH 87
RG+N+ N + E + V + ++ +G + +RIP
Sbjct: 14 RGINIGNALEAPNEGDWGVVIKDEFFDIIKEAGFSHVRIPIR 55
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural
genomics, PSI, protein structure initiative; 1.84A
{Deinococcus radiodurans} SCOP: c.1.12.5
Length = 284
Score = 31.0 bits (71), Expect = 0.91
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 249 VREAVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEI 299
+ + +++ + R++ ML++ + ILA +ET G+ EI
Sbjct: 90 LTPELSGVVVPKLEMGAEARQVAQMLQERSLPLPILAGLETGAGVWNAREI 140
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2
heterotetrameric complex, lyase,
oxidoreductase/transferase complex, lyase; HET: ACO NAD
N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3
a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*
Length = 715
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 10 VVLLPWRKPDPLAPPVNQVNAAFADRYLNHLEQLNLDSPVRGVNLT 55
+V L + VN+ N + ++ + D+ V+GV ++
Sbjct: 17 IVELKFDLKGE---SVNKFNRLTLNELRQAVDAIKADASVKGVIVS 59
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A*
3zwb_A* 2x58_A*
Length = 742
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 23 PPVNQVNAAFADRYLNHLEQLNLDSPVRGVNLT 55
PPVN V+ N L++ D V+ + +
Sbjct: 39 PPVNAVSPTVIREVRNGLQKAGSDHTVKAIVIC 71
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2);
oxidoreductase, peroxisomes, beta-oxidation, fatty acid
oxidation; 2.50A {Arabidopsis thaliana}
Length = 725
Score = 30.7 bits (70), Expect = 1.3
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 23 PPVNQVNAAFADRYLNHLEQLNLDSPVRGVNLT 55
PPVN ++ ++ E+ + V+ + +T
Sbjct: 26 PPVNSLSFDVLYNLKSNYEEALSRNDVKAIVIT 58
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase;
1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Length = 320
Score = 30.3 bits (68), Expect = 1.4
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 50 RGVNLTNIMATVGENNNSV----DLIKLMLRSGVNILRIPTHSSKLYQ 93
G+N+ N + E + V + K++ G + +RIP S
Sbjct: 22 HGINMGNALEAPVEGSWGVYIEDEYFKIIKERGFDSVRIPIRWSAHIS 69
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.6 bits (69), Expect = 1.6
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 17/121 (14%)
Query: 409 FEDLCAL---ACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPIL 465
F+D L A SI + L Q A +V+T S +S ++ Y+
Sbjct: 474 FKDKYVLITGAGK-----GSIGAEVLQGLL--QGGAKVVVTTSRFSKQVTDYYQSIYAKY 526
Query: 466 AV--SSLGYVCRHLNVYRNIRPL-HYIRNPQADWS--MDVDCRVQFAI--QHGMEIGIIS 518
S+L V + +++ L +I + + + D+D + FA + G+E+ I
Sbjct: 527 GAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHID 586
Query: 519 P 519
Sbjct: 587 S 587
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM
glucanase, carbohydrate metabolism, cellulose
degradation, glycosidase; HET: BTB; 2.10A {Clostridium
cellulovorans}
Length = 515
Score = 29.5 bits (65), Expect = 3.1
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 50 RGVNLTNIMATVGE----NNNSV--DLIKLMLRSGVNILRIP 85
G NL N M +G N +I + +G N LR+P
Sbjct: 24 VGWNLGNTMDAIGGETNWGNPMTTHAMINKIKEAGFNTLRLP 65
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D
glucanase, hydrolase; HET: CT3; 2.08A {Clostridium
cellulovorans} PDB: 3ndy_A*
Length = 345
Score = 29.2 bits (65), Expect = 3.1
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 50 RGVNLTNIMATVGE----NNNSV--DLIKLMLRSGVNILRIPTHSSKLYQ 93
G NL N M +G N +I + +G N LR+P
Sbjct: 21 VGWNLGNTMDAIGGETNWGNPMTTHAMINKIKEAGFNTLRLPVTWDGHMG 70
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 28.4 bits (64), Expect = 6.9
Identities = 11/63 (17%), Positives = 18/63 (28%), Gaps = 11/63 (17%)
Query: 324 LAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQ--DGADVVVLTQ 381
LA + + L GD D + + DGA +VL+
Sbjct: 125 LAGAYLGSGIGAGHAALLTTGD-------RFAG--PRIDRWNSVDVTMYGDGAAALVLST 175
Query: 382 SEQ 384
+
Sbjct: 176 RDG 178
>1o65_A Hypothetical protein YIIM; structural genomics, unknown function;
2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A
Length = 246
Score = 27.7 bits (61), Expect = 8.4
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 10/90 (11%)
Query: 456 SKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIG 515
+R ++ VS C LN + +I + Q + V + G
Sbjct: 114 DIFRWGEALIQVSQPRSPCYKLNYHFDIS--DIAQLMQNTGKVGWLYSV-------IAPG 164
Query: 516 IISPGDPLVLINGWRKGAGFTNIMRVVYAP 545
+S PL L++ + +
Sbjct: 165 KVSADAPLELVSR-VSDVTVQEAAAIAWHM 193
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12
protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of
homoprotocatechuate; 1.39A {Escherichia coli} PDB:
2vwt_A
Length = 267
Score = 28.0 bits (63), Expect = 8.6
Identities = 9/39 (23%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Query: 272 GMLEDHV----DRVLILAKIETLLGMEYMDEIIMESDGV 306
G +E+++ D + +L ++E+ ++ +DE I++ +G+
Sbjct: 133 GRIENYMAQVNDSLCLLVQVESKTALDNLDE-ILDVEGI 170
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,581,751
Number of extensions: 550393
Number of successful extensions: 1569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1503
Number of HSP's successfully gapped: 54
Length of query: 547
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 449
Effective length of database: 3,965,535
Effective search space: 1780525215
Effective search space used: 1780525215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)