RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6272
(547 letters)
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 134
Score = 120 bits (301), Expect = 8e-33
Identities = 47/132 (35%), Positives = 75/132 (56%)
Query: 411 DLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSL 470
D+ P ++ + V A + +A AIIV++ SG + +LVSKYRP CPI+ V+
Sbjct: 1 DMRNCTPKPTSTTETVAASAVAAVFEQKAKAIIVLSTSGTTPRLVSKYRPNCPIILVTRC 60
Query: 471 GYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWR 530
R ++YR + P + + P +DW+ DV+ R+ F I+ E GI+ GD V I G++
Sbjct: 61 PRAARFSHLYRGVFPFVFEKEPVSDWTDDVEARINFGIEKAKEFGILKKGDTYVSIQGFK 120
Query: 531 KGAGFTNIMRVV 542
GAG +N ++V
Sbjct: 121 AGAGHSNTLQVS 132
>d2vgba3 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 118 bits (297), Expect = 3e-32
Identities = 57/132 (43%), Positives = 82/132 (62%)
Query: 411 DLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSL 470
+L A DP I V AA KC A AIIV+T +G SA+L+S+YRP+ ++AV+
Sbjct: 1 ELRRAAPLSRDPTEVTAIGAVEAAFKCCAAAIIVLTTTGRSAQLLSRYRPRAAVIAVTRS 60
Query: 471 GYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWR 530
R +++ R + PL Y P+A W+ DVD RVQF I+ G G + GD ++++ GWR
Sbjct: 61 AQAARQVHLCRGVFPLLYREPPEAIWADDVDRRVQFGIESGKLRGFLRVGDLVIVVTGWR 120
Query: 531 KGAGFTNIMRVV 542
G+G+TNIMRV+
Sbjct: 121 PGSGYTNIMRVL 132
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain
{Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 135
Score = 114 bits (286), Expect = 9e-31
Identities = 53/135 (39%), Positives = 76/135 (56%)
Query: 411 DLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSL 470
+L + D ++ + V A+ KC A A+IV+T SG SA V++YRP+ PI+AV+
Sbjct: 1 ELARASSQSTDLMEAMAMGSVEASYKCLAAALIVLTESGRSAHQVARYRPRAPIIAVTRN 60
Query: 471 GYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWR 530
R ++YR I P+ Q W+ DVD RV A+ G G GD ++++ GWR
Sbjct: 61 HQTARQAHLYRGIFPVVCKDPVQEAWAEDVDLRVNLAMNVGKARGFFKKGDVVIVLTGWR 120
Query: 531 KGAGFTNIMRVVYAP 545
G+GFTN MRVV P
Sbjct: 121 PGSGFTNTMRVVPVP 135
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain
{Leishmania mexicana [TaxId: 5665]}
Length = 141
Score = 111 bits (278), Expect = 1e-29
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 405 EKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPI 464
E F + L P+ ++ + VN+ + +A A++V++ +G SA+LV+KYRP CPI
Sbjct: 2 EYVFFNSIKKLQHIPMSADEAVCSSAVNSVYETKAKAMVVLSNTGRSARLVAKYRPNCPI 61
Query: 465 LAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLV 524
+ V++ CR LN+ + + + + + + RV ++ G + GD V
Sbjct: 62 VCVTTRLQTCRQLNITQGVESVFFDADKLGHD-EGKEHRVAAGVEFAKSKGYVQTGDYCV 120
Query: 525 LINGWRKGAGFTNIMRVVY 543
+I+ K G+ N R++
Sbjct: 121 VIHADHKVKGYANQTRILL 139
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 117
Score = 90.4 bits (224), Expect = 2e-22
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 423 AHSIVIACVNAALKCQAVAIIVITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRN 482
++ V A K A I+V T G SA+ V KY P ILA+++ L + +
Sbjct: 2 TEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKG 61
Query: 483 IRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISPGDPLVLINGWRKGAGFTNIMRV 541
+ P D + + ++ G+ GD +V+++G +G TN V
Sbjct: 62 VVPQLV------KEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASV 114
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 282
Score = 87.4 bits (216), Expect = 1e-19
Identities = 56/218 (25%), Positives = 102/218 (46%), Gaps = 16/218 (7%)
Query: 206 NNDVHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREA--------VDIII 257
++ H I+ + + P + + V D V + VD++
Sbjct: 68 THEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPAVSEKDIQDLKFGVEQDVDMVF 127
Query: 258 MSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVAT 317
S + A + E+R +L + + I++KIE G+ DEI+ SDG+++ R L +
Sbjct: 128 ASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEI 187
Query: 318 SVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVV 377
E FLAQKMI RCN+ GKP + +L ++ + + + +DV + V DGAD +
Sbjct: 188 PAEKVFLAQKMIIGRCNRAGKPVICATQML--ESMIKKPRPTRAEGSDVANAVLDGADCI 245
Query: 378 VLTQSEQAH-----HRVDILKEILKKTESVLWEKQVFE 410
+L+ E A V + I ++ E+ ++ +++FE
Sbjct: 246 MLSG-ETAKGDYPLEAVRMQHLIAREAEAAMFHRKLFE 282
Score = 58.1 bits (140), Expect = 5e-10
Identities = 55/249 (22%), Positives = 99/249 (39%), Gaps = 13/249 (5%)
Query: 26 NQVNAAFADRYLNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIP 85
Q++AA AD +L H +L++DS T I+ T+G + SV+ +K M++SG+N+ R+
Sbjct: 4 QQLHAAMADTFLEHKCRLDIDSAPITARNTGIICTIGPASRSVETLKEMIKSGMNVARMN 63
Query: 86 -THSSKLYQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSR-PSNVGHG 143
+H + Y E I KNV+ A E + + AVA++TKG + + V
Sbjct: 64 FSHGTHEYHAETI-KNVRTATESFASDPILYRPVAVALDTKGPAVSEKDIQDLKFGVEQD 122
Query: 144 DNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDS------MELPKRVIPDDIVYIDRNI 197
+ + A V +++ KG ++ + + D + + R
Sbjct: 123 VDMVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGD 182
Query: 198 KLKVVEKENNDVHCTVIRGGKLMDNQLVTV----PRVTFNLPVIADRDKHVVDLIVREAV 253
+ E + +I G + V P + V V +
Sbjct: 183 LGIEIPAEKVFLAQKMIIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGA 242
Query: 254 DIIIMSSVT 262
D I++S T
Sbjct: 243 DCIMLSGET 251
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal
domain {Leishmania mexicana [TaxId: 5665]}
Length = 258
Score = 85.4 bits (211), Expect = 3e-19
Identities = 46/156 (29%), Positives = 80/156 (51%), Gaps = 8/156 (5%)
Query: 253 VDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQ 312
VD+I S + A + ++R L ++I+ KIE G++ +D II ESDG+++ R
Sbjct: 106 VDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGD 165
Query: 313 LAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQD 372
L V E +AQK++ ++CN GKP + +L ++ + +++DV + V +
Sbjct: 166 LGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLE--SMTYNPRPTRAEVSDVANAVFN 223
Query: 373 GADVVVLTQSEQAH-----HRVDILKEILKKTESVL 403
GAD V+L+ E A V + I + +S L
Sbjct: 224 GADCVMLSG-ETAKGKYPNEVVQYMARICLEAQSAL 258
Score = 47.3 bits (112), Expect = 2e-06
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 37 LNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRI 84
L H L++ PV I+ T+G + SV+ +K +++SG+++ R+
Sbjct: 3 LAHNLTLSIFDPVANYRAARIICTIGPSTQSVEALKGLIQSGMSVARM 50
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 246
Score = 78.9 bits (194), Expect = 4e-17
Identities = 48/185 (25%), Positives = 89/185 (48%), Gaps = 9/185 (4%)
Query: 228 PRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGMLEDH-VDRVLILAK 286
+ P +A++DK + + VD + S + + + E+R L+ H + + I++K
Sbjct: 63 ILLDTKGPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISK 122
Query: 287 IETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDI 346
IE G+ DEI+ SDG+++ R L V VE AQKM+ +C + K + +
Sbjct: 123 IENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATMM 182
Query: 347 LPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAH-----HRVDILKEILKKTES 401
L ++ + + + DV + + DG D V+L+ E A V I+ I ++T+
Sbjct: 183 L--DSMIKNPRPTDAEAGDVANAILDGTDAVMLSG-ESAKGKYPLEAVSIMATICERTDR 239
Query: 402 VLWEK 406
V+ +
Sbjct: 240 VMNSR 244
Score = 40.7 bits (95), Expect = 2e-04
Identities = 11/74 (14%), Positives = 33/74 (44%)
Query: 55 TNIMATVGENNNSVDLIKLMLRSGVNILRIPTHSSKLYQVEKILKNVKLAIEEVSLEECK 114
T I+ T+G S +++ ML +G+N++R+ + + ++N++ + +
Sbjct: 4 TKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAI 63
Query: 115 VVTCAVAIETKGTQ 128
++ + +
Sbjct: 64 LLDTKGPALAEKDK 77
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 265
Score = 78.5 bits (193), Expect = 6e-17
Identities = 46/202 (22%), Positives = 87/202 (43%), Gaps = 8/202 (3%)
Query: 214 IRGGKLMDNQLVTVPRVTFNLPVIADRDKHVVDLIVREAVDIIIMSSVTGANSIREMRGM 273
R + + + P ++++DK + V+ V ++ S + AN + +R +
Sbjct: 67 ARKSEELYPGRPLAIALDTKGPALSEKDKEDLRFGVKNGVHMVFASFIRTANDVLTIREV 126
Query: 274 LEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRIQLAVATSVEVTFLAQKMIAARC 333
L + V I+ KIE G+ DEI+ +DGV++ R L + QK + A+
Sbjct: 127 LGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPEVLAVQKKLIAKS 186
Query: 334 NKQGKPFLVVGDILPDHNVEEYSDVSIGDMNDVNSIVQDGADVVVLTQSEQAHHR----- 388
N GKP + +L ++ + +++DV + + DGAD V+L+ E A
Sbjct: 187 NLAGKPVICATQML--ESMTYNPRPTRAEVSDVGNAILDGADCVMLSG-ETAKGNYPINA 243
Query: 389 VDILKEILKKTESVLWEKQVFE 410
V + E E + ++
Sbjct: 244 VTTMAETAVIAEQAIAYLPNYD 265
Score = 41.9 bits (98), Expect = 8e-05
Identities = 14/69 (20%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 37 LNHLEQLNLDSPVRGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIPTHSSKLYQVEK 96
L L LN+ + + T+I+ T+G N+ + + + ++G+NI+R+ +
Sbjct: 4 LERLTSLNVVAG-SDLRRTSIIGTIGPKTNNPETLVALRKAGLNIVRMNFSHGSYEYHKS 62
Query: 97 ILKNVKLAI 105
++ N + +
Sbjct: 63 VIDNARKSE 71
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 102
Score = 64.5 bits (157), Expect = 1e-13
Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 8/107 (7%)
Query: 129 LRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPD 188
+RTG + G + VE+ +GA + +T + K L++D + K V
Sbjct: 3 IRTGLIK-------GSGTAEVELKKGATLKITLDNAYMEKCDENILWLDYKNICKVVDVG 55
Query: 189 DIVYI-DRNIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTFNL 234
VY+ D I L+V +K + + V GG L + V +P +L
Sbjct: 56 SKVYVDDGLISLQVKQKGPDFLVTEVENGGFLGSKKGVNLPGAAVDL 102
>d2vgba1 b.58.1.1 (A:160-261) Pyruvate kinase (PK) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 102
Score = 63.0 bits (153), Expect = 5e-13
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 8/107 (7%)
Query: 129 LRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPD 188
+RTG L G VE+ +G+ +++T + T+G ++VD + + V
Sbjct: 3 IRTGILQ-------GGPESEVELVKGSQVLVTVDPAFRTRGNANTVWVDYPNIVRVVPVG 55
Query: 189 DIVYI-DRNIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTFNL 234
+YI D I L V + + V GG L + V +P +L
Sbjct: 56 GRIYIDDGLISLVVQKIGPEGLVTQVENGGVLGSRKGVNLPGAQVDL 102
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 101
Score = 58.4 bits (141), Expect = 2e-11
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 11/108 (10%)
Query: 129 LRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPD 188
+RTG + N I ++ T + K ++VD + K +
Sbjct: 3 IRTGTTT---------NDVDYPIPPNHEMIFTTDDKYAKACDDKIMYVDYKNITKVISAG 53
Query: 189 DIVYI-DRNIKLKVVEK-ENNDVHCTVIRGGKLMDNQLVTVPRVTFNL 234
I+Y+ D + +V+E ++ + + GK+ ++ V +P +L
Sbjct: 54 RIIYVDDGVLSFQVLEVVDDKTLKVKALNAGKICSHKGVNLPGTDVDL 101
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania
mexicana [TaxId: 5665]}
Length = 99
Score = 57.6 bits (139), Expect = 4e-11
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 128 QLRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIP 187
++RTG+ + +GA +T + KGT + ++D L K V P
Sbjct: 1 EIRTGQFV----------GGDAVMERGATCYVTTDPAFADKGTKDKFYIDYQNLSKVVRP 50
Query: 188 DDIVYI-DRNIKLKVVEKE-NNDVHCTVIRGGKLMDNQLVTVPRVTFNL 234
+ +YI D + L+V E + CTV + D + V +P +L
Sbjct: 51 GNYIYIDDGILILQVQSHEDEQTLECTVTNSHTISDRRGVNLPGCDVDL 99
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli
[TaxId: 562]}
Length = 98
Score = 53.4 bits (128), Expect = 1e-09
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 12/107 (11%)
Query: 129 LRTGKLSRPSNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPD 188
+RT KL + V + G T ++ G + + V +
Sbjct: 3 IRTMKL---------EGGNDVSLKAGQTFTFTTDK--SVIGNSEMVAVTYEGFTTDLSVG 51
Query: 189 DIVYI-DRNIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTFNL 234
+ V + D I ++V E N V C V+ G L +N+ V +P V+ L
Sbjct: 52 NTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIAL 98
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga
maritima [TaxId: 2336]}
Length = 325
Score = 37.0 bits (84), Expect = 0.005
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 50 RGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIPTH 87
RG NL + N + M + N +RIP
Sbjct: 5 RGFNLLEAFSIKSTGNFKEEDFLWMAQWDFNFVRIPMC 42
>d1qoua_ b.17.1.1 (A:) Centroradialis protein Cen {Garden snapdragon
(Antirrhinum majus) [TaxId: 4151]}
Length = 164
Score = 32.3 bits (73), Expect = 0.076
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 184 RVIPDDIVYIDRNIKLKVVEKENNDVHCTVIRGGKLMDNQLVTVPRVTF 232
RVI D + + +K+ V +N+ V G +L + + + PRV
Sbjct: 2 RVIGDVVDHFTSTVKMS-VIYNSNNSIKHVYNGHELFPSAVTSTPRVEV 49
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia
heterothallica, aka Myceliophthora thermophila [TaxId:
78579]}
Length = 332
Score = 31.0 bits (69), Expect = 0.39
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 49 VRGVNLT--NIMATVG-----ENNNSVDLIKLMLRSGVNILRIP---THSSKLYQVEKIL 98
RGV+ + + G N N+ L ++ +GVN +R + Y ++ +
Sbjct: 4 YRGVDWSSVVVEERAGVSYKNTNGNAQPLENILAANGVNTVRQRVWVNPADGNYNLDYNI 63
Query: 99 KNVKLAIE 106
K A
Sbjct: 64 AIAKRAKA 71
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase
{Streptococcus pyogenes [TaxId: 1314]}
Length = 217
Score = 29.6 bits (66), Expect = 0.73
Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 19/189 (10%)
Query: 198 KLKVVEKENND-VHCTVIRGGKLMDNQLVTVPRVTFNLPVIADRDKHV-----VDLIVRE 251
+L +E+ + + VH + MD Q V P ++F V+A KH L+V +
Sbjct: 19 ELARIEETDAEYVHIDI------MDGQFV--PNISFGADVVASMRKHSKLVFDCHLMVVD 70
Query: 252 AVDIIIMSSVTGANSIREMRGMLEDHVDRVLILAKIETLLGMEYMDEIIMESDGVVLNRI 311
+ + GA+ + + + G+ + +L+ +
Sbjct: 71 PERYVEAFAQAGADIMTIHTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLV 130
Query: 312 QLAVATSVEVTFLAQKMIAARCNKQGKPFLVVGDILPDHNVEEYSDVSIG-DMNDVNSIV 370
+ +V F Q + + V + + +V G D + +
Sbjct: 131 DQVLIMTVNPGFGGQAF----IPECLEKVATVAKWRDEKGLSFDIEVDGGVDNKTIRACY 186
Query: 371 QDGADVVVL 379
+ GA+V V
Sbjct: 187 EAGANVFVA 195
>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase
(hydroxymethylbilane synthase), N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 29.3 bits (65), Expect = 0.92
Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 12/138 (8%)
Query: 80 NILRIPTHSSKL--YQVEKILKNVKLAIEEVSLEECKVVTCAVAIETKGTQLRTGKLSRP 137
N+LRI T S L +Q + + + + +E +VT I GK
Sbjct: 2 NVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTRGDVILDTPLAKVGGKGLFV 61
Query: 138 SNVGHGDNSYSVEIAQGANIVLTANQLIETKGTVKRLFVDSMELPKRVIPDDIVYIDRNI 197
+E+A N A ++ + + + +R P D +
Sbjct: 62 KE---------LEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYD 112
Query: 198 KLKVVEKENNDVHCTVIR 215
L + + V + +R
Sbjct: 113 SLDAL-PAGSIVGTSSLR 129
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum
[TaxId: 1515]}
Length = 340
Score = 29.2 bits (64), Expect = 1.3
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 50 RGVNLTNIMATVG-------ENNNSVDLIKLMLRSGVNILRIPTH 87
G+NL ++ + + I+ + +G + +R+P
Sbjct: 6 AGINLGGWISQYQVFSKEHFDTFITEKDIETIAEAGFDHVRLPFD 50
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis
[TaxId: 1402]}
Length = 387
Score = 29.0 bits (64), Expect = 1.5
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 7/44 (15%)
Query: 49 VRGVNLTNI--MATVG-----ENNNSVDLIKLMLRSGVNILRIP 85
++GV++++I + G E+ D+ K + +GVN +R+
Sbjct: 15 IKGVDVSSIIALEESGVAFYNESGKKQDIFKTLKEAGVNYVRVR 58
>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon
esculentum) [TaxId: 4081]}
Length = 370
Score = 28.5 bits (62), Expect = 2.0
Identities = 6/48 (12%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 49 VRGVNLTNIMATVGENNNSVDL---IKLMLRSGVNILRIPTHSSKLYQ 93
+ G N +M + + + + + + +N+ R S +
Sbjct: 20 INGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSR 67
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus
aculeatus) [TaxId: 5053]}
Length = 334
Score = 28.5 bits (63), Expect = 2.1
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 49 VRGVNLT--NIMATVG-----ENNNSVDLIKLMLRSGVNILRIP---THSSKLYQVEKIL 98
RG +++ ++ G N + L ++ +G+N +R S Y ++ L
Sbjct: 4 YRGADISSLLLLEDEGYSYKNLNGQTQALETILADAGINSIRQRVWVNPSDGSYDLDYNL 63
Query: 99 KNVKLAIE 106
+ K
Sbjct: 64 ELAKRVKA 71
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1,
OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 200
Score = 27.1 bits (60), Expect = 3.9
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 374 ADVVVLTQS-----EQAHHRVDILKEILKKTESVLWEKQ 407
AD+VV +Q R + ++EI ++ E+ E++
Sbjct: 75 ADLVVFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQK 113
>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 25.5 bits (56), Expect = 3.9
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 197 IKLKVVEKENNDVHCTVIRG---GKLMD 221
I LKV ++ + V + R KLM
Sbjct: 2 INLKVAGQDGSVVQFKIKRHTPLSKLMK 29
>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain
{Bacillus sp. [TaxId: 1409]}
Length = 357
Score = 27.5 bits (60), Expect = 4.0
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 50 RGVNLTNIMATVGENNNSVDLIKLMLRSGVNILRIPTH 87
RG++ + GE N + L G N++R+ +
Sbjct: 38 RGMSTHG-LQWFGEIVNENAFVALSNDWGSNMIRLAMY 74
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 27.3 bits (59), Expect = 4.1
Identities = 24/160 (15%), Positives = 38/160 (23%), Gaps = 2/160 (1%)
Query: 385 AHHRVDILKEILKKTESVLWEKQVFEDLCALACPPLDPAHSIVIACVNAALKCQAVAIIV 444
A+ D IL K WE L A A + AA K Q I
Sbjct: 19 AYDAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDE 78
Query: 445 ITCSGYSAKLVSKYRPQCPILAVSSLGYVCRHLNVYRNIRPLHYIRN-PQADWSMDVDCR 503
+ + + R P + +V + H+ +
Sbjct: 79 HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWH 138
Query: 504 VQFAIQHGMEI-GIISPGDPLVLINGWRKGAGFTNIMRVV 542
++ PG L N G + +
Sbjct: 139 THQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDI 178
>d1dgwa_ b.82.1.2 (A:) Seed storage 7S protein {Jack bean (Canavalia
ensiformis), canavalin/vinculin [TaxId: 3823]}
Length = 178
Score = 26.5 bits (58), Expect = 6.3
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 3/62 (4%)
Query: 460 PQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISP 519
+ L + C N + H+ + ++ + G + +
Sbjct: 33 EKLENLRDYRVLEYCSKPN---TLLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQ 89
Query: 520 GD 521
GD
Sbjct: 90 GD 91
>d1uika1 b.82.1.2 (A:148-350) Seed storage 7S protein {Soybean
(Glycine max), beta-conglycinin alpha prime subunit
[TaxId: 3847]}
Length = 203
Score = 26.4 bits (58), Expect = 7.5
Identities = 8/70 (11%), Positives = 17/70 (24%), Gaps = 3/70 (4%)
Query: 460 PQCPILAVSSLGYVCRHLNVYRNIRPLHYIRNPQADWSMDVDCRVQFAIQHGMEIGIISP 519
Q L + N + H+ ++ + + +
Sbjct: 32 QQLQNLRDYRILEFNSKPN---TLLLPHHADADYLIVILNGTAILTLVNNDDRDSYNLQS 88
Query: 520 GDPLVLINGW 529
GD L + G
Sbjct: 89 GDALRVPAGT 98
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.395
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,043,920
Number of extensions: 98263
Number of successful extensions: 349
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 36
Length of query: 547
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 457
Effective length of database: 1,171,896
Effective search space: 535556472
Effective search space used: 535556472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)