RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6273
(82 letters)
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 29.7 bits (67), Expect = 0.10
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 28 TETKSFACDQCVSYFKTNSALLQHKRK 54
+K + C+ C+ + K L +H +K
Sbjct: 194 DCSKLYFCEFCLKFMKRKEQLQRHMKK 220
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 27.9 bits (62), Expect = 0.46
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 50 QHKRKMHDEFVNLFSCPLCG 69
Q + M +FVN+ +CP CG
Sbjct: 193 QASKTMFGQFVNITACPTCG 212
>gnl|CDD|220184 pfam09332, Mcm10, Mcm10 replication factor. Mcm10 is a eukaryotic
DNA replication factor that regulates the stability and
chromatin association of DNA polymerase alpha.
Length = 346
Score = 27.2 bits (60), Expect = 0.80
Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 10/62 (16%)
Query: 11 VETKTRQALDNHILCVHTETKSFACDQC-VSYFKTNSAL--LQHKRKMHDEFVNLFSCPL 67
+E K + K+ C QC + FK H HD F CP
Sbjct: 240 MEEKMLT-------IREMKCKAVTCKQCKYTAFKAADRCVEENHDLHWHDAVKRFFKCPD 292
Query: 68 CG 69
CG
Sbjct: 293 CG 294
>gnl|CDD|226535 COG4049, COG4049, Uncharacterized protein containing
archaeal-type C2H2 Zn-finger [General function
prediction only].
Length = 65
Score = 25.0 bits (54), Expect = 2.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 62 LFSCPLCGEVFRSHQGYKIH 81
CP CG VFR + Y H
Sbjct: 17 FLRCPRCGMVFRRRKDYIRH 36
>gnl|CDD|201972 pfam01783, Ribosomal_L32p, Ribosomal L32p protein family.
Length = 56
Score = 24.5 bits (54), Expect = 3.0
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 51 HKRKMHD--EFVNLFSCPLCGEVFRSH 75
KR+ H + NL CP CGE+ H
Sbjct: 13 RKRRAHWKLKAPNLVECPNCGELKLPH 39
>gnl|CDD|227443 COG5112, UFD2, U1-like Zn-finger-containing protein [General
function prediction only].
Length = 126
Score = 25.4 bits (55), Expect = 3.0
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 33 FACDQCVSYFKTNSALLQHKR 53
C +C YF T AL++HK+
Sbjct: 56 HYCIECARYFITEKALMEHKK 76
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 25.2 bits (55), Expect = 3.2
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 33 FACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRS 74
+ C C+ F ++ +L QH R V CP+CG+ FR+
Sbjct: 74 YVCPLCLMPFSSSVSLKQHIRYTEHSKV----CPVCGKEFRN 111
>gnl|CDD|224284 COG1365, COG1365, Predicted ATPase (PP-loop superfamily) [General
function prediction only].
Length = 255
Score = 25.5 bits (56), Expect = 3.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 63 FSCPLCGEVFRSHQGYK 79
+ CPL EV + H K
Sbjct: 208 YGCPLLREVHKRHPHLK 224
>gnl|CDD|215642 PLN03238, PLN03238, probable histone acetyltransferase MYST;
Provisional.
Length = 290
Score = 25.2 bits (55), Expect = 3.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 29 ETKSFACDQCVSYFKTNSALLQHKRK 54
TK + C+ C+ Y + +LL+H K
Sbjct: 45 CTKLYICEYCLKYMRKKKSLLRHLAK 70
>gnl|CDD|211833 TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec) selenium
transferase. In the archaea and eukaryotes, the
conversion of the mischarged serine to selenocysteine
(Sec) on its tRNA is accomplished in two steps. This
enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase,
acts second, after a phosphophorylation step catalyzed
by a homolog of the bacterial SelA protein [Protein
synthesis, tRNA aminoacylation].
Length = 444
Score = 25.0 bits (55), Expect = 4.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 10 DVETKTRQALDNHILCVHTETKSFA 34
D+E + ++ILCV + T FA
Sbjct: 193 DIERAIEEIGPDNILCVLSTTSCFA 217
>gnl|CDD|217969 pfam04216, FdhE, Protein involved in formate dehydrogenase
formation. The function of these proteins is unknown.
They may possibly be involved in the formation of
formate dehydrogenase.
Length = 283
Score = 24.6 bits (54), Expect = 7.0
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 9/47 (19%)
Query: 1 MTRYKCHACDVETKTRQALDNHILCVHTET---KSFACDQCVSYFKT 44
R KC C TK + ++ CD C SY K
Sbjct: 203 FVRVKCTNCG-STK-----GLAYWSLEEGEPGVRAETCDTCHSYLKI 243
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus,
particularly the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 22.9 bits (50), Expect = 7.5
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 3 RYKCHACDVETKTRQALDNHI 23
++ C ACD K+ AL+NH+
Sbjct: 1 QFYCVACDKYFKSENALENHL 21
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 24.2 bits (53), Expect = 9.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 58 EFVNLFSCPLCGEVFRSHQGYKI 80
+ V + +C C EV G+ I
Sbjct: 116 KVVPVHACKFCSEVHVGKVGHLI 138
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.135 0.449
Gapped
Lambda K H
0.267 0.0698 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,647,721
Number of extensions: 247404
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 50
Length of query: 82
Length of database: 10,937,602
Length adjustment: 51
Effective length of query: 31
Effective length of database: 8,675,548
Effective search space: 268941988
Effective search space used: 268941988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.3 bits)