RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6273
(82 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 35.5 bits (82), Expect = 1e-04
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTET---KSFACDQCVSYFKTNSALLQHKRKMHDE 58
+C C + + +L+ H H ET F C+ C F+ ++ H+ K H
Sbjct: 8 LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Score = 31.6 bits (72), Expect = 0.005
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKRKMHDEFV--NLFSCPLCGEVFRSHQGYKIH 81
+ + C+ C + ++L H+RK H E V F C CG+ F H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRK-HAETVAALRFPCEFCGKRFEKPDSVAAH 57
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 34.4 bits (80), Expect = 4e-04
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH 81
H+ K + C C + F + + H + H E V F CP C V +H
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 30.2 bits (69), Expect = 0.016
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 4 YKCHACDVETKTRQALDNHILCVHT--ETKSFACDQCVSYFKTNSALLQHKRKMH 56
Y+C+ C + HIL F C C + S L H RK H
Sbjct: 16 YECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 33.3 bits (77), Expect = 0.001
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVF------RSHQGYKI 80
++ C C + S +H H V ++ CP C + F +H KI
Sbjct: 5 KEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV--KI 62
Query: 81 HH 82
H
Sbjct: 63 IH 64
Score = 27.9 bits (63), Expect = 0.12
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 1/54 (1%)
Query: 4 YKCHACDVETKTRQALDNHIL-CVHTETKSFACDQCVSYFKTNSALLQHKRKMH 56
Y+C C H + K + C C F + H + +H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH 64
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 33.2 bits (77), Expect = 0.001
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRK 54
KC C ++ AL H +H + F C+ C K S L +H +K
Sbjct: 10 EKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
Score = 25.5 bits (57), Expect = 0.89
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ C +C + +AL H+R
Sbjct: 3 SGSSGHPEKCSECSYSCSSKAALRIHER 30
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo
sapiens}
Length = 155
Score = 33.4 bits (77), Expect = 0.003
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 9/78 (11%)
Query: 14 KTRQALDNHILC--VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE-------FVNLFS 64
+ Q + + C + S C F T L+ H H
Sbjct: 5 SSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE 64
Query: 65 CPLCGEVFRSHQGYKIHH 82
CP G+ F++ H
Sbjct: 65 CPREGKSFKAKYKLVNHI 82
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.9 bits (74), Expect = 0.006
Identities = 4/41 (9%), Positives = 9/41 (21%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP 66
+ + C C + + L H +
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTLTSS 214
Score = 28.3 bits (62), Expect = 0.23
Identities = 6/55 (10%), Positives = 14/55 (25%), Gaps = 2/55 (3%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH 81
+ + + + A + + + C +C V S H
Sbjct: 147 QKPMSTRIAEATSAIVSKHPARVGLPPTASSG--HGYQCHVCSAVLFSPLDLDAH 199
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 31.8 bits (71), Expect = 0.007
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 6/80 (7%)
Query: 2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVN 61
Y+C C+ + + +H C C F + +H+ K
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRNAA---VCPYCSLRFFSPELKQEHESKCEY---K 68
Query: 62 LFSCPLCGEVFRSHQGYKIH 81
+C C F+S H
Sbjct: 69 KLTCLECMRTFKSSFSIWRH 88
Score = 28.7 bits (63), Expect = 0.10
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE 58
C C + + + H E K C +C+ FK++ ++ +H+ ++H++
Sbjct: 41 NAAVCPYCSLRFFSPELKQEHE--SKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQ 95
Score = 26.0 bits (56), Expect = 1.2
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 30 TKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH 81
+ + C C + + H+R + V CP C F S + + H
Sbjct: 14 KEVYQCRLCNAKLSSLLEQGSHERLCRNAAV----CPYCSLRFFSPELKQEH 61
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 30.1 bits (67), Expect = 0.014
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 3 RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE 58
+Y C C + K L HI HT+ + + C C FKT L +H +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 30.9 bits (69), Expect = 0.014
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 3 RYKCHACDVETKTRQALDNHILCVHTETK---SFACDQCVSYFKTNSALLQHKRKMH 56
Y+C C +T H+ H S+ C +C K AL +H K H
Sbjct: 18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH 74
Score = 24.7 bits (53), Expect = 3.2
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 2/57 (3%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKRKMHDEFV--NLFSCPLCGEVFRSHQGYKIH 81
+ C C + H H V + + C C + + + H
Sbjct: 13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEH 69
Score = 23.6 bits (50), Expect = 7.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACD 36
Y C C+ TK AL H L H ++F
Sbjct: 51 YVCVECNFLTKRYDALSEHNLKYHPGEENFKLT 83
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 30.2 bits (69), Expect = 0.019
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNL--FSCPLCGEVFRSHQGYKIHH 82
HT K +AC C F+ L H ++ HD F C CG+ F + + H
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTF-TRRNTMARH 66
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 30.5 bits (68), Expect = 0.029
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 1 MTRYKCHACDVETKTRQALDNHI-LCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEF 59
++++C C T L H+ H + D + E
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED 76
Query: 60 VN-LFSCPLCGEVFRSHQGYKIHH 82
+ C CG F S Q +H
Sbjct: 77 AQKVLKCMYCGHSFESLQDLSVHM 100
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.9 bits (66), Expect = 0.030
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
Query: 29 ETKSFACDQCVSYF-KTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH 81
E C C KT L +H + C C + F+S G H
Sbjct: 21 ERGEAVCPTCNVVTRKTLVGLKKHMEVCQKL-QDALKCQHCRKQFKSKAGLNYH 73
Score = 27.2 bits (59), Expect = 0.39
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 3 RYKCHACDVET-KTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMH 56
C C+V T KT L H+ + C C FK+ + L H H
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEH 78
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 28.7 bits (65), Expect = 0.038
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMH 56
T K + C +C F N++L++H R H
Sbjct: 6 SGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 29.9 bits (66), Expect = 0.044
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH 81
F C C+ F ++ +L QH R V CP+C + F S H
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKV----CPVCKKEFTSTDSALDH 119
Score = 28.0 bits (61), Expect = 0.20
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 3 RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMH 56
++ C C + + +L HI + C C F + + L H K H
Sbjct: 74 QFVCPLCLMPFSSSVSLKQHI---RYTEHTKVCPVCKKEFTSTDSALDHVCKKH 124
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 29.0 bits (66), Expect = 0.073
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHD-EFVNL 62
C C + L+ H L H+ K ++C C FK + H R HD
Sbjct: 8 VACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKP 65
Query: 63 FSCPLCGEVFRSHQGYKIH 81
+ C CG+ F H
Sbjct: 66 YICQSCGKGFSRPDHLNGH 84
Score = 27.5 bits (62), Expect = 0.23
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH 82
+ + AC+ C F+ L +HK E +SCP+CG F+ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGE--KPYSCPVCGLRFKRKDRMSYHV 55
Score = 25.5 bits (57), Expect = 1.4
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 4 YKCHACDVETKTRQALDNHILCVHT--ETKSFACDQCVSYFKTNSALLQHKRKMH 56
Y C C + K + + H+ H K + C C F L H +++H
Sbjct: 36 YSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 28.9 bits (66), Expect = 0.077
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKR 53
YKC CD +L+ H+ +H++ + F C C + +S L H R
Sbjct: 37 YKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLR 85
Score = 25.8 bits (58), Expect = 1.1
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKR 53
+KC C + L H+ HT K + C C +S+L +H R
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLR 57
Score = 25.1 bits (56), Expect = 1.7
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
+ C+ C F L H R
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDKLKTHMR 29
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 29.1 bits (66), Expect = 0.080
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 4 YKCHACDVETKTRQALDNHILC--VHTETKSFACDQCVSY-----FKTNSALLQHKR 53
+ C E +++ L +HI +H E K F C FK L+ H R
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMR 60
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 29.0 bits (66), Expect = 0.098
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 4 YKCHACDVETKTRQALDNH--ILCVHTETKSFACDQCVSYFKTNSALLQHKR 53
++C C ++ L H C++ + F C C F+ L H
Sbjct: 36 FECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMV 87
Score = 27.1 bits (61), Expect = 0.47
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMH 56
+ C C + R L H + HT + C C F L H K+H
Sbjct: 67 FTCSVCQETFRRRMELRLH-MVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118
Score = 26.3 bits (59), Expect = 0.88
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRK--MH-DEFV 60
+C C + ++ L H HT K F C +C + LL+H+ + M+ E
Sbjct: 8 VECPTCHKKFLSKYYLKVH-NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE-- 64
Query: 61 NLFSCPLCGEVFRSHQGYKIHH 82
+F+C +C E FR ++H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHM 86
Score = 25.2 bits (56), Expect = 1.8
Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH 82
+ + C C F + L H RK E F CP CG+ + + H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGE--KPFECPKCGKCYFRKENLLEHE 55
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 27.5 bits (62), Expect = 0.11
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMH 56
+ K + C C F L H +++H
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 36
Score = 25.2 bits (56), Expect = 0.96
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKT 44
Y C +C L+ HI VHT + C VS +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 28.3 bits (62), Expect = 0.12
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 29 ETKSFACDQC-VSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH 81
+ S +C C KT L +H E +F+C CG+ RS G K H
Sbjct: 31 DKGSVSCPTCQAVGRKTIEGLKKHMENCKQE---MFTCHHCGKQLRSLAGMKYH 81
Score = 23.3 bits (49), Expect = 8.2
Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 3 RYKCHACDVET-KTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMH 56
C C KT + L H+ + + + F C C ++ + + H H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHM--ENCKQEMFTCHHCGKQLRSLAGMKYHVMANH 86
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.2 bits (61), Expect = 0.13
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ KS CD+C F SAL H+R
Sbjct: 6 SGSGEKSHTCDECGKNFCYISALRIHQR 33
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.14
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + CD C F+ S+L H+R
Sbjct: 6 SGTGEKPYKCDVCHKSFRYGSSLTVHQR 33
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 29.0 bits (64), Expect = 0.15
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 31 KSFACDQCVSYFKTNSALLQHKRKMH 56
S+ C+ C + F T SAL +H R H
Sbjct: 115 SSYVCNVCNARFSTMSALSEHLRSDH 140
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.16
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F+ +S L H+
Sbjct: 6 SGTGEKPYKCNECGKAFRAHSNLTTHQV 33
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 27.1 bits (61), Expect = 0.18
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F+ NS L +H+R
Sbjct: 6 SGTGEKPYKCNECGKVFRHNSYLSRHQR 33
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 27.6 bits (62), Expect = 0.18
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMH 56
VH D C KT + L+H + H
Sbjct: 55 VHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 23.7 bits (52), Expect = 5.0
Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 7/83 (8%)
Query: 4 YKCHA--CDVETKTRQALDNHILCVHTETKSFACDQ--CVSYFKTNSALLQHKRKMHDEF 59
Y CH C K L H HT+ + C C F S L +H++ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH-QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-H-AG 58
Query: 60 VNLFSCPLCGEVFRSHQGYKIHH 82
C V ++ Y H
Sbjct: 59 YPCKKDDSCSFVGKTWTLYLKHV 81
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 27.8 bits (63), Expect = 0.18
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 4/78 (5%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
++C C L HI HT K FACD C F + +H+ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRD-IQHI--LPI 59
Query: 64 SCPLCGEVFRSHQGYKIH 81
E+ + +
Sbjct: 60 LEDKVEELLSKNYHLENE 77
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.18
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 35/86 (40%)
Query: 17 QALDNHILC---VHTETKSFACDQ----------CVSYFK------------TNSALLQH 51
+N L +H + +Y +NSAL +
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 52 KRKMHDEFVNLFSCPLCGEVFRSHQG 77
+ + + V +F G QG
Sbjct: 149 VGEGNAQLVAIFG----G------QG 164
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 26.8 bits (60), Expect = 0.20
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
K + CDQC F +L+ H R
Sbjct: 5 SSGGEKPYRCDQCGKAFSQKGSLIVHIR 32
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 28.3 bits (64), Expect = 0.21
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE 58
VH D C KT + L+H + H +
Sbjct: 158 VHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQD 190
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 27.4 bits (62), Expect = 0.22
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
E + + CD+C F +S L +H+R
Sbjct: 12 QQRERRRYKCDECGKSFSHSSDLSKHRR 39
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.24
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K + CD C F ++ L++H+R
Sbjct: 6 SGSGEKPYVCDYCGKAFGLSAELVRHQR 33
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.7 bits (60), Expect = 0.24
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C +C F+ NS L +H+
Sbjct: 6 SGTGEKPYKCHECGKVFRRNSHLARHQL 33
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 26.7 bits (60), Expect = 0.24
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMH 56
HT K + C C F L++H +K+H
Sbjct: 24 SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 26.5 bits (59), Expect = 0.25
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
+ K ++C +C F N+ L+QH++
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQK 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 26.3 bits (59), Expect = 0.26
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K F C C F + L QH+R
Sbjct: 6 SGTGEKPFDCIDCGKAFSDHIGLNQHRR 33
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.4 bits (59), Expect = 0.26
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C +C F NS+ QH+R
Sbjct: 6 SGTGEKPYKCMECGKAFGDNSSCTQHQR 33
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 26.4 bits (59), Expect = 0.31
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C +C F+ S LL+H+R
Sbjct: 6 SGTGEKPYNCKECGKSFRWASCLLKHQR 33
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.3 bits (59), Expect = 0.33
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T + + C +C FKT S+L+ H+R
Sbjct: 6 SGTGQRPYECIECGKAFKTKSSLICHRR 33
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 26.3 bits (59), Expect = 0.34
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F NS L QH++
Sbjct: 6 SGTGEKRYKCNECGKVFSRNSQLSQHQK 33
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.37
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C C F+ +S L+QH
Sbjct: 6 SGTGEKPYKCQVCGKAFRVSSHLVQHHS 33
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 0.38
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ C C +F S +QH+R
Sbjct: 6 SGHGERGHRCSDCGKFFLQASNFIQHRR 33
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 0.39
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
+ TKS C +C F S L QH+R
Sbjct: 7 GSSTKSHQCHECGRGFTLKSHLNQHQR 33
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.41
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K F CD C F S L +H
Sbjct: 6 SGTGEKPFKCDICGKSFCGRSRLNRHSM 33
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.42
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F +S L +H+R
Sbjct: 6 SGTGEKPYNCEECGKAFIHDSQLQEHQR 33
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 26.0 bits (57), Expect = 0.43
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
F C +C F + L+QH+R
Sbjct: 7 GAGENPFKCSKCDRVFTQRNYLVQHER 33
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 26.3 bits (59), Expect = 0.43
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
VHT K + C +C F NS L+ H+R
Sbjct: 36 VHTGEKPYKCLECGKAFSQNSGLINHQR 63
Score = 25.9 bits (58), Expect = 0.68
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+H+ K + C +C F +S L+QH+R
Sbjct: 8 IHSGEKPYGCVECGKAFSRSSILVQHQR 35
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.44
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K F C +C F+ N L H R
Sbjct: 6 SGSGEKPFKCKECGKAFRQNIHLASHLR 33
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.44
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F NS L +H+R
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRR 33
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.44
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K ++C+ C F ++ L QH R
Sbjct: 6 SGTGEKPYSCNVCGKAFVLSAHLNQHLR 33
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.44
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
K + CD C F +S L H+R
Sbjct: 6 SGMGEKCYKCDVCGKEFSQSSHLQTHQR 33
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.46
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ + F C++C F S L H R
Sbjct: 6 SGSGERPFKCNECGKGFGRRSHLAGHLR 33
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 26.0 bits (58), Expect = 0.48
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K F C++C F TNS H+R
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSHQR 33
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 0.48
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K C +C F NS L+ H+R
Sbjct: 6 SGTGEKPHECRECGKSFSFNSQLIVHQR 33
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.49
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K + C++C F NS L H R
Sbjct: 6 SGSGEKPYKCNECGKVFTQNSHLTNHWR 33
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.51
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + CD C F +++L QH+R
Sbjct: 6 SGTGEKPYECDVCRKAFSHHASLTQHQR 33
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 25.9 bits (58), Expect = 0.51
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K + C+ C + L H+R
Sbjct: 6 SGSVEKPYKCEDCGKGYNRRLNLDMHQR 33
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 0.52
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F NS L +H+
Sbjct: 6 SGTGKKPYKCNECGKVFTQNSHLARHRG 33
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.52
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F NS L H+R
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLANHQR 33
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 26.2 bits (59), Expect = 0.53
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKR 53
+ C C K L H+L +H++T+ + C C F S + +H
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTF 50
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.53
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F S+L H+
Sbjct: 6 SGTGVKPYMCNECGKAFSVYSSLTTHQV 33
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 0.54
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F NS L +H+
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLARHRG 33
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 26.6 bits (60), Expect = 0.56
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
K F C C +F + LL H+R
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIHER 38
Score = 25.9 bits (58), Expect = 0.96
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+H++ K F C +C F + L HK
Sbjct: 67 IHSKEKPFKCQECGKGFCQSRTLAVHKT 94
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.5 bits (57), Expect = 0.58
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
K F C++C F +S+L H+R
Sbjct: 6 SGAGKKLFKCNECKKTFTQSSSLTVHQR 33
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.58
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C + + L H++
Sbjct: 6 SGTGEKPYKCEKCGKGYNSKFNLDMHQK 33
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.59
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K F C++C F NS L H+R
Sbjct: 6 SGSGEKPFQCEECGKRFTQNSHLHSHQR 33
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.59
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K F C +C + L QH+R
Sbjct: 6 SGTGEKPFKCGECGKSYNQRVHLTQHQR 33
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.64
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
K + C +C F + L QH
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRLTQHWI 33
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.65
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ + + C++C F +S L++H +
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIEHLK 33
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.65
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F+ S+L H+
Sbjct: 6 SGTGEKPYKCNECGKAFRARSSLAIHQA 33
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.67
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K F C++C F NS L H+R
Sbjct: 6 SGSGEKPFKCEECGKRFTQNSQLHSHQR 33
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 25.6 bits (57), Expect = 0.70
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C +C F LL+H+R
Sbjct: 6 SGTGEKLYNCKECGKSFSRAPCLLKHER 33
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 25.2 bits (56), Expect = 0.72
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K F C C F+ L+ H+R
Sbjct: 6 SGTGQKPFECTHCGKSFRAKGNLVTHQR 33
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 25.1 bits (56), Expect = 0.74
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F T S L+ H+R
Sbjct: 6 SGTGEKPYECNECQKAFNTKSNLMVHQR 33
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 25.2 bits (56), Expect = 0.78
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C +C F + L+QH+R
Sbjct: 6 SGTGEKPYECKECGKAFSQTTHLIQHQR 33
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 25.9 bits (58), Expect = 0.80
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K + CD+C + F+ L HK
Sbjct: 11 MTHSDKPYKCDRCQASFRYKGNLASHKT 38
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 0.80
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F NS L++H+
Sbjct: 6 SGTGEKPYKCNECGKVFTQNSHLVRHRG 33
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 25.2 bits (56), Expect = 0.81
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K F C C F + S LL H++
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQ 31
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 25.1 bits (56), Expect = 0.82
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F++ S L+ H R
Sbjct: 6 SGTGMKPYVCNECGKAFRSKSYLIIHTR 33
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M*
1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5
2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y*
3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Length = 60
Score = 25.2 bits (56), Expect = 0.89
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 50 QHKRKMHD--EFVNLFSCPLCGEVFRSH 75
+ R+ H NL CP C SH
Sbjct: 16 RDMRRSHHALTAPNLTECPQCHGKKLSH 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 0.94
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F S L +H+R
Sbjct: 6 SGTGEKPYKCNECGKAFSQTSKLARHQR 33
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 25.9 bits (58), Expect = 0.95
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKR 53
++C C L HI HT K FACD C F + +H +
Sbjct: 35 FQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTK 83
Score = 24.7 bits (55), Expect = 2.4
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
HT K F C C+ F + L H R
Sbjct: 29 HTGQKPFQCRICMRNFSRSDHLTTHIR 55
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.2 bits (56), Expect = 0.95
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F S L +H+R
Sbjct: 6 SGTGGKPYQCNECGKAFSQTSKLARHQR 33
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 25.2 bits (56), Expect = 0.99
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K F C +C F +S L H+R
Sbjct: 6 SGTGEKPFECAECGKSFSISSQLATHQR 33
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus}
PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5
2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5
2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Length = 60
Score = 25.3 bits (56), Expect = 0.99
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 50 QHKRKMHDEF--VNLFSCPLCGEVFRSH 75
+ R+ H L CP C + H
Sbjct: 16 RDARRSHHALTPPTLVPCPECKAMKPPH 43
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 25.1 bits (56), Expect = 0.99
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K + C +C F ++ L +H+R
Sbjct: 6 SGSGEKPYKCSECGKAFHRHTHLNEHRR 33
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.0
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T F C +C F + L+ H++
Sbjct: 6 SGTGENPFICSECGKVFTHKTNLIIHQK 33
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 24.8 bits (55), Expect = 1.0
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K + C++C F S L+ H+R
Sbjct: 6 SGSGEKPYECNECGKAFIWKSLLIVHER 33
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.1
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
T K C +C F S L+ H+R
Sbjct: 7 GTGEKPCKCTECGKAFCWKSQLIMHQR 33
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 24.8 bits (55), Expect = 1.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C QC F S L+ H+R
Sbjct: 6 SGTGVKPYGCSQCAKTFSLKSQLIVHQR 33
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.1
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C +C F S L H++
Sbjct: 6 SGTGEKPYRCAECGKAFTDRSNLFTHQK 33
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.1
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C +C F + L QH+R
Sbjct: 6 SGTGEKPYRCGECGKAFAQKANLTQHQR 33
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 25.6 bits (57), Expect = 1.1
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 27 HTETKSFACD--QCVSYFKTNSALLQHKRKMH 56
+ + CD C F L HK+ H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQH 33
Score = 24.4 bits (54), Expect = 2.9
Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 4 YKCHA--CDVETKTRQALDNHILCVHTETKSFACDQ--CVSYFKTNSALLQHKRKMHDEF 59
C C RQ L++H H KSF+C + C F L +H + D
Sbjct: 8 MPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT- 66
Query: 60 VNLFSCPLCGEVF 72
+ C G
Sbjct: 67 -RDYICEFSGPSS 78
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.2
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T + C++C F ++ L+QH+R
Sbjct: 6 SGTGERPHKCNECGKSFIQSAHLIQHQR 33
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.2
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C +C F S L++H++
Sbjct: 6 SGTGEKPYICAECGKAFTIRSNLIKHQK 33
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.2
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K F C +C F S L H++
Sbjct: 6 SGTGGKHFECTECGKAFTRKSTLSMHQK 33
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.3
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C+QC F S+L H+
Sbjct: 6 SGTGEKPYECNQCGKAFSVRSSLTTHQA 33
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.8 bits (55), Expect = 1.3
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F L H
Sbjct: 6 SGTGEKPYKCEECGKGFICRRDLYTHHM 33
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.3
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T + + C C F S L++H++
Sbjct: 6 SGTGERPYICTVCGKAFTDRSNLIKHQK 33
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.8 bits (55), Expect = 1.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C++C F S L +H+R
Sbjct: 6 SGTGEKPYICNECGKSFIQKSHLNRHRR 33
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.5
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T + + C +C F S L+ H+R
Sbjct: 6 SGTGERHYECSECGKAFARKSTLIMHQR 33
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.6
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T + + C +C F S L H+R
Sbjct: 6 SGTGERHYECSECGKAFIQKSTLSMHQR 33
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 24.4 bits (54), Expect = 1.6
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K F C +C F SAL H +
Sbjct: 6 SGTGEKPFKCVECGKGFSRRSALNVHHK 33
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.6
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C C F S L H++
Sbjct: 6 SGTGEKPYECSICGKSFTKKSQLHVHQQ 33
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.5 bits (54), Expect = 1.7
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T++KS+ C++C F L +H++
Sbjct: 6 SGTDSKSYNCNECGKAFTRIFHLTRHQK 33
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.7
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K + C +C +K L H+R
Sbjct: 6 SGSGEKPYKCVECGKGYKRRLDLDFHQR 33
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.8
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K + C++C F S L H+R
Sbjct: 6 SGSGEKPYGCNECGKTFSQKSILSAHQR 33
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.8
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C C F +L H+R
Sbjct: 6 SGTGEKPYECSVCGKAFSHRQSLSVHQR 33
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.8
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C C F + L QH++
Sbjct: 6 SGTGEKPYECKVCSKAFTQKAHLAQHQK 33
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 25.5 bits (57), Expect = 1.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
HT K +AC +C F + L H+R
Sbjct: 99 THTGEKPYACPECGKSFSQLAHLRAHQR 126
Score = 24.3 bits (54), Expect = 4.7
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
HT K + C +C F + L H+R
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQR 98
Score = 24.3 bits (54), Expect = 5.6
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+ K +AC +C F + L +H+R
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQR 42
Score = 23.9 bits (53), Expect = 6.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
HT K + C +C F AL H+R
Sbjct: 155 THTGEKPYKCPECGKSFSRRDALNVHQR 182
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.4 bits (54), Expect = 1.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K F C +C F T S L+ H+R
Sbjct: 6 SGTGEKPFECSECQKAFNTKSNLIVHQR 33
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 25.0 bits (54), Expect = 1.9
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
+ K+ C++C +AL + +
Sbjct: 34 LSRRKTPMCEKCRKDSCQEAALNKDEG 60
Score = 23.1 bits (49), Expect = 8.8
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 9/47 (19%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVF 72
+H +S C +C F S L + K C C +
Sbjct: 12 IHLGDRSQKCSKCGIIFIRRSTLSRRKT---------PMCEKCRKDS 49
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 25.3 bits (55), Expect = 1.9
Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 12 ETKTRQALDNHILC--VHTETKSFACDQCVSYFKTNSALLQHKRKMH 56
+ Q + + C + S C F T L+ H H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 24.2 bits (52), Expect = 4.8
Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 8/58 (13%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSY--------FKTNSALLQHKR 53
+CD T L H+ H C FK L+ H R
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR 83
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 25.1 bits (56), Expect = 1.9
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+H + + C C FK L+ H +
Sbjct: 31 MHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 2.0
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
K + C +C F + S L+ H R
Sbjct: 6 SGAGEKPYGCSECGKAFSSKSYLIIHMR 33
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 2.0
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C C F S L H+R
Sbjct: 6 SGTGEKPYECSDCGKSFIKKSQLHVHQR 33
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 24.1 bits (53), Expect = 2.1
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
+ + + C +C F+ +L H+R
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHER 31
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 23.6 bits (52), Expect = 2.7
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
K + C+ C + F+ L H R
Sbjct: 6 SGGEKPYPCEICGTRFRHLQTLKSHLR 32
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 24.0 bits (51), Expect = 2.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
+ K F C++C F + L QH+R
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHER 33
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 25.0 bits (54), Expect = 2.8
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 33 FACDQCVSYFKTNSALLQHKR-KMH 56
C C YF ++ L H R K H
Sbjct: 51 HRCLACARYFIDSTNLKTHFRSKDH 75
>2xqy_A GH, envelope glycoprotein H; immune system-viral protein complex,
envelope protein; HET: NAG; 2.05A {Suid herpesvirus}
Length = 572
Score = 25.2 bits (54), Expect = 2.8
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 39 VSYFKTNSALLQHKRKMHDEFV-----NLFSCPLCGEVF 72
++ +SA + +M + N C C VF
Sbjct: 433 LAIVSNDSAACDYTDRMPESQHLPATDNPSVCVYCDCVF 471
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 2.9
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
T K F C +C F + +L +H R
Sbjct: 7 GTGEKPFQCKECGMNFSWSCSLFKHLR 33
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 3.1
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
+ C QC F LL H+R
Sbjct: 7 GAGVNPYKCSQCEKSFSGKLRLLVHQR 33
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 23.6 bits (52), Expect = 3.3
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
K + C+ C + F + L H
Sbjct: 5 SSGGEKPYKCETCGARFVQVAHLRAHVL 32
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 23.6 bits (52), Expect = 3.4
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
+ + C +C F L+ H+R
Sbjct: 5 SSGENPYECSECGKAFNRKDQLISHQR 31
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 3.6
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C C F S L H++
Sbjct: 6 SGTGEKPYKCSDCGKSFTWKSRLRIHQK 33
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 3.6
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
K++ C +C F S+L H+
Sbjct: 6 SGMGEKTWKCRECDMCFSQASSLRLHQN 33
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 3.6
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
+ K + C +C F L QHKR
Sbjct: 7 GSGKKPYECKECRKTFIQIGHLNQHKR 33
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 3.7
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T + C +C F L+ H+R
Sbjct: 6 SGTGENPYECHECGKAFSRKYQLISHQR 33
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.2 bits (51), Expect = 4.0
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
T K + C C F S L H++
Sbjct: 6 SGTGEKPYKCSDCGKAFTRKSGLHIHQQ 33
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 23.4 bits (50), Expect = 4.7
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
K AC+ C F+ L +HK
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKL 33
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 24.0 bits (53), Expect = 4.8
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
HT K F C C F + L H R
Sbjct: 60 RHTGVKPFQCKTCQRKFSRSDHLKTHTR 87
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 23.0 bits (50), Expect = 5.9
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 27 HTETKSFACDQCVSYFKTNSALLQHKR 53
+ C QC F +L H+R
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQR 32
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 23.8 bits (50), Expect = 10.0
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 33 FACDQCVSYFKTNSALLQHKRKMHDEFV 60
F C +F+ +A H+ + +
Sbjct: 419 FGCRDSADHFEQMAAASMHQVRSPSNAI 446
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.135 0.449
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,147,199
Number of extensions: 48508
Number of successful extensions: 587
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 242
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.8 bits)