RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6273
(82 letters)
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 30.4 bits (69), Expect = 0.003
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE 58
HT K +AC C F+ L H ++ HD
Sbjct: 2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 29.2 bits (66), Expect = 0.008
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE 58
H+ K + C C + F + + H + H E
Sbjct: 2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE 34
Score = 21.9 bits (47), Expect = 4.5
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTE 29
Y+C+ C + HIL HTE
Sbjct: 9 YECYICHARFTQSGTMKMHILQKHTE 34
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 27.2 bits (61), Expect = 0.039
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
+H+ K + C +C F +S L+QH+R
Sbjct: 1 IHSGEKPYGCVECGKAFSRSSILVQHQR 28
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 25.3 bits (56), Expect = 0.22
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFACD 36
Y C +C L+ HI VHT + C
Sbjct: 6 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 38
Score = 24.2 bits (53), Expect = 0.60
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 31 KSFACDQCVSYFKTNSALLQHKRKMH 56
K + C C F L H +++H
Sbjct: 4 KPYICQSCGKGFSRPDHLNGHIKQVH 29
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 25.5 bits (56), Expect = 0.24
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKR 53
E + + CD+C F +S L +H+R
Sbjct: 6 QQRERRRYKCDECGKSFSHSSDLSKHRR 33
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 58
Score = 25.0 bits (55), Expect = 0.51
Identities = 9/27 (33%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 51 HKRKMHD--EFVNLFSCPLCGEVFRSH 75
R+ H NL CP C SH
Sbjct: 16 DMRRSHHALTAPNLTECPQCHGKKLSH 42
>d2giva1 d.108.1.1 (A:4-274) Probable histone acetyltransferase
MYST1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 271
Score = 25.9 bits (57), Expect = 0.54
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 33 FACDQCVSYFKTNSALLQHKRK 54
+ C+ C+ Y K + H +
Sbjct: 32 WLCEYCLKYMKYEKSYRFHLGQ 53
>d2ozua1 d.108.1.1 (A:507-776) Histone acetyltransferase MYST3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 270
Score = 25.9 bits (57), Expect = 0.57
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 31 KSFACDQCVSYFKTNSALLQHKRK 54
K + C+ C+ Y K+ + L QH +K
Sbjct: 30 KLYLCEFCLKYMKSRTILQQHMKK 53
>d1fy7a_ d.108.1.1 (A:) Histone acetyltransferase ESA1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 273
Score = 25.5 bits (56), Expect = 0.66
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 33 FACDQCVSYFKTNSALLQHKRK 54
+ D + YF + ++++K
Sbjct: 35 YIDDFTLQYFGSKKQYERYRKK 56
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus
thermophilus [TaxId: 274]}
Length = 59
Score = 24.6 bits (54), Expect = 0.75
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 51 HKRKMHDEF--VNLFSCPLCGEVFRSHQ 76
R+ H L CP C + H
Sbjct: 16 DARRSHHALTPPTLVPCPECKAMKPPHT 43
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 23.9 bits (52), Expect = 0.84
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRK 54
T K F C C F + L H+++
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 23.5 bits (51), Expect = 1.8
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 33 FACDQCVSYFKTNSALLQHKR-KMH 56
C C YF ++ L H R K H
Sbjct: 16 HRCLACARYFIDSTNLKTHFRSKDH 40
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 21.8 bits (47), Expect = 3.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 31 KSFACDQCVSYFKTNSALLQHKR 53
K + C +C F NS L+ H+R
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQR 23
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 21.8 bits (47), Expect = 4.6
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 31 KSFACDQCVSYFKTNSALLQHKR 53
K F C C+ F + L H R
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIR 24
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 21.5 bits (46), Expect = 4.9
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 31 KSFACDQCVSYFKTNSALLQHKR 53
K FAC +C F + L +H +
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIK 23
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 21.4 bits (46), Expect = 5.3
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 31 KSFACDQCVSYFKTNSALLQHKR 53
+SF C+ C F L +H R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR 23
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 21.6 bits (46), Expect = 6.9
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 63 FSCPLCGEVFRSHQ 76
++C C FRS Q
Sbjct: 6 YTCSFCKREFRSAQ 19
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster
[TaxId: 7227]}
Length = 54
Score = 21.6 bits (45), Expect = 7.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 64 SCPLCGEVFRSHQGYKIH 81
+CP+C V R + + H
Sbjct: 26 TCPICYAVIRQSRNLRRH 43
>d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060
{Streptococcus pyogenes [TaxId: 1314]}
Length = 120
Score = 22.3 bits (47), Expect = 7.6
Identities = 8/57 (14%), Positives = 16/57 (28%)
Query: 10 DVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP 66
D+E++ A D + + + + + KM E N
Sbjct: 35 DIESQINGAFDEMERRLALVGLTLDAVVQMDCLFRDVWNIPVMEKMIKERFNGRYPA 91
>d2ghfa1 g.37.1.1 (A:45-102) Zinc fingers and homeoboxes protein
1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 21.8 bits (46), Expect = 9.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 4 YKCHACDVETKTRQALDNHILCVHTETKSFA 34
Y C C+ TK AL H L H ++F
Sbjct: 7 YVCVECNFLTKRYDALSEHNLKYHPGEENFK 37
>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295
{Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 21.3 bits (44), Expect = 9.7
Identities = 7/28 (25%), Positives = 19/28 (67%)
Query: 31 KSFACDQCVSYFKTNSALLQHKRKMHDE 58
K C +C+ FK++ ++ +H+ ++H++
Sbjct: 2 KKLTCLECMRTFKSSFSIWRHQVEVHNQ 29
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.135 0.449
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 292,789
Number of extensions: 10560
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 61
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (21.9 bits)