BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6275
(391 letters)
Database: swissprot
455,621 sequences; 169,969,125 total letters
Searching..................................................done
>gi|71153763|sp|Q9CZU3.1|SK2L2_MOUSE RecName: Full=Superkiller viralicidic activity 2-like 2; AltName:
Full=ATP-dependent helicase SKIV2L2
Length = 1040
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 261/363 (71%), Positives = 309/363 (85%), Gaps = 5/363 (1%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP D +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 97 VKVQSVETVEGCTHEVALPADEDYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 156
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 157 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 216
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 217 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 276
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 277 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 336
Query: 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL +AGD AK GD K GRKGG KG +N FKIVKMIMERN PVI+FSF
Sbjct: 337 REDNFNTAMQVLRDAGDLAK-GDQK-GRKGGTKG--PSNVFKIVKMIMERNFQPVIIFSF 392
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VF+NA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 393 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 452
Query: 376 HHG 378
HHG
Sbjct: 453 HHG 455
>gi|71153172|sp|P42285.3|SK2L2_HUMAN RecName: Full=Superkiller viralicidic activity 2-like 2; AltName:
Full=ATP-dependent helicase SKIV2L2
Length = 1042
Score = 557 bits (1435), Expect = e-158, Method: Compositional matrix adjust.
Identities = 261/363 (71%), Positives = 309/363 (85%), Gaps = 5/363 (1%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP + +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 99 VKVQSVETVEGCTHEVALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 158
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 159 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 218
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 219 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 278
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 279 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 338
Query: 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL +AGD AK GD K GRKGG KG +N FKIVKMIMERN PVI+FSF
Sbjct: 339 REDNFNTAMQVLRDAGDLAK-GDQK-GRKGGTKG--PSNVFKIVKMIMERNFQPVIIFSF 394
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VFSNA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 395 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 454
Query: 376 HHG 378
HHG
Sbjct: 455 HHG 457
>gi|1352980|sp|P47047.1|MTR4_YEAST RecName: Full=ATP-dependent RNA helicase DOB1; AltName: Full=mRNA
transport regulator MTR4
Length = 1073
Score = 478 bits (1230), Expect = e-134, Method: Compositional matrix adjust.
Identities = 229/361 (63%), Positives = 286/361 (79%), Gaps = 9/361 (2%)
Query: 30 HEVALPPDLEYQPLAQSKE-KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVV 88
H+VALPP+ +Y P+A+ K AR YPF LDPFQ AI CI+ +SVLVSAHTSAGKTVV
Sbjct: 121 HQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVV 180
Query: 89 AEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE 148
AEYAIA SLK QRVIYT+PIKALSNQKYRE +F DVGL+TGD+TINP + CL+MTTE
Sbjct: 181 AEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTE 240
Query: 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNAS 208
ILR+MLYRGSE+ REV WVIFDE+HYMRDKERG VWEET+ILL D VR+VFLSATIPNA
Sbjct: 241 ILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAM 300
Query: 209 QFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKFKEHNYQVAMNVL 267
+FA+W+ +H QPCH+VYT++RPTPLQHYLFP GDGI+L+VD+ + F+E N+Q AM +
Sbjct: 301 EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 360
Query: 268 ANA-GDAAKAGDHKGGR----KGG-PKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCE 321
+N GD + D +G + KGG KG + + +KIVKMI ++ PVIVFSFSK+DCE
Sbjct: 361 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCE 420
Query: 322 IYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVK 380
A++M+KL+FN +E + + +F+NA+ +L E DR+LPQI++ILPLLRRGIGIHH G+
Sbjct: 421 ELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLL 480
Query: 381 P 381
P
Sbjct: 481 P 481
>gi|3287946|sp|O14232.1|MTR4_SCHPO RecName: Full=ATP-dependent RNA helicase mtr4
Length = 1117
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/370 (63%), Positives = 289/370 (78%), Gaps = 9/370 (2%)
Query: 21 VVETLEACLHEVALPPDLEYQPLAQSKEK--PAREYPFVLDPFQKEAILCIENNQSVLVS 78
VVE H+V++PP+ +Y P+++ K PAR YPF LDPFQ +I CIE +SVLVS
Sbjct: 160 VVELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYPFTLDPFQAVSIACIERQESVLVS 219
Query: 79 AHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP 138
AHTSAGKTVVAEYA+A SL+ QRVIYT+PIKALSNQKYRE +F DVGL+TGDVTINP
Sbjct: 220 AHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINP 279
Query: 139 SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFV 198
++CL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRDKERG VWEET+ILL D FV
Sbjct: 280 DATCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFV 339
Query: 199 FLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKFKE 257
FLSATIPNA QFA+W++ +H QPCHVVYTD+RPTPLQHYLFP+G DGIHL+VD+ + F+E
Sbjct: 340 FLSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLFPSGSDGIHLVVDEKSNFRE 399
Query: 258 HNYQVAMNVL-ANAGD----AAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIV 312
N+Q AM+ L GD A G+ K G+ G ++ +KIVKMIM +N PVIV
Sbjct: 400 ENFQRAMSALMEKQGDDPAAMATKGNAKKGKTGKGGVKGPSDIYKIVKMIMVKNYNPVIV 459
Query: 313 FSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRG 372
FSFSK++CE A+QM+KL+ N+ E LV +F+NA++ LSE+DR+LPQIE+ILPLLRRG
Sbjct: 460 FSFSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRG 519
Query: 373 IGIHH-GVKP 381
IGIHH G+ P
Sbjct: 520 IGIHHSGLLP 529
>gi|2495152|sp|Q23223.1|MTR4_CAEEL RecName: Full=mRNA transport homolog 4; AltName:
Full=Uncharacterized helicase W08D2.7
Length = 1026
Score = 463 bits (1191), Expect = e-129, Method: Compositional matrix adjust.
Identities = 225/372 (60%), Positives = 288/372 (77%), Gaps = 10/372 (2%)
Query: 17 MKVIVVETL----EACLHEVALPPDLEYQPLAQ-SKEKPAREYPFVLDPFQKEAILCIEN 71
M+ I+V T+ E C HEVA+PP+ E+ L + S +PA+ YPF LD FQK+AILCI+N
Sbjct: 80 MENIIVHTIRTDNENCTHEVAIPPNAEFAELRENSGTEPAKYYPFQLDAFQKQAILCIDN 139
Query: 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT 131
NQSVLVSAHTSAGKTVVA YAIA L++ QRVIYT+PIKALSNQKYRE EE+FKDVGL+T
Sbjct: 140 NQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIKALSNQKYRELEEEFKDVGLMT 199
Query: 132 GDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191
GDVT+NP +SCL+MTTEILR+MLYRGSEI +EVGWV++DEIHYMRDKERG VWEET+IL+
Sbjct: 200 GDVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGWVVYDEIHYMRDKERGVVWEETIILM 259
Query: 192 SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVD 251
S N++ FLSATIPNA QFAQWV+ + QP +VVYTDYRPTPLQH+++P GG+G++ +V+
Sbjct: 260 SKNIKQAFLSATIPNARQFAQWVASIKQQPVNVVYTDYRPTPLQHWIYPVGGEGMYEVVN 319
Query: 252 -DNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPV 310
+F+E ++ AM+ LA AGD+ AG R GG G +N KI++ + +
Sbjct: 320 VKGEFREDKFRDAMSGLATAGDS--AGSFNKRRTGGGTQG-DSNVLKIIRSVASNDGLNC 376
Query: 311 IVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLR 370
IVFSFS+K+CE YA+ + ++FN+ E +V V+ +A+ LS ED+KLPQI NILPLLR
Sbjct: 377 IVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILPLLR 436
Query: 371 RGIGIHH-GVKP 381
RGIG+HH G+ P
Sbjct: 437 RGIGVHHSGLMP 448
>gi|3219961|sp|O13799.1|YE02_SCHPO RecName: Full=Uncharacterized helicase C17H9.02
Length = 1030
Score = 430 bits (1105), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/362 (58%), Positives = 266/362 (73%), Gaps = 18/362 (4%)
Query: 28 CLHEVALPPDLEYQPLAQ--SKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGK 85
LH+V +P D +Y PL + + PA+ YPF LDPFQ AI C+E +SVLVSAHTSAGK
Sbjct: 94 ALHKVVVPDDYDYIPLNKHIPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGK 153
Query: 86 TVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIM 145
TV+AEYAIA +LK QRVIYT+PIK+LSNQKYRE +F DVGL+TGDV+INPS+SCLIM
Sbjct: 154 TVIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGLMTGDVSINPSASCLIM 213
Query: 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205
TTEILR MLY+ SEI E+ WVIFDE+HYMRDK+RG VWEETLILL D +RF+FLSAT+P
Sbjct: 214 TTEILRAMLYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLP 273
Query: 206 NASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKFKEHNYQVAM 264
NA QFA+W+S +H QPCHVVYTDYRPTPLQH+++P G DGI+++VD+ NKFK N++ +
Sbjct: 274 NALQFARWISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFKKVL 333
Query: 265 NVLANAGDAAKAGDHKGGRKG----GPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDC 320
VL DH ++ K ++ +I+ M++ P+IVF FSKK+C
Sbjct: 334 EVL----------DHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIVFCFSKKEC 383
Query: 321 EIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GV 379
EI A Q KL+ N+TE +LV ++F +A++ LSEEDR L Q E + LL RGIGIHH G+
Sbjct: 384 EINAHQFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGL 443
Query: 380 KP 381
P
Sbjct: 444 LP 445
>gi|8489004|sp|P35207.2|SKI2_YEAST RecName: Full=Antiviral helicase SKI2; AltName: Full=Superkiller
protein 2
Length = 1287
Score = 295 bits (755), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 162/377 (42%), Positives = 225/377 (59%), Gaps = 49/377 (12%)
Query: 50 PAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109
PAR +PF LD FQKEA+ +E SV V+AHTSAGKTVVAEYAIA + + + IYT+PI
Sbjct: 322 PARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPI 381
Query: 110 KALSNQKYREFEEQFKDV--GLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWV 167
KALSNQK+R+F+E F DV GLITGDV INP ++CLIMTTEILR+MLYRG+++ R+V +V
Sbjct: 382 KALSNQKFRDFKETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFV 441
Query: 168 IFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT 227
IFDE+HY+ D++RG VWEE +I+L +V+F+ LSAT+PN +FA W+ + +V+ T
Sbjct: 442 IFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVIST 501
Query: 228 DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL--------------ANAGDA 273
RP PL+ ++ + I +I +++F E N++ +L G
Sbjct: 502 PKRPVPLEINIWAK-KELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGST 560
Query: 274 AKAG-------DHKGGR---------KGGPK--GGVQTNCFK--------------IVKM 301
A+ G D +GGR +GG + G + +N K IV
Sbjct: 561 ARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNY 620
Query: 302 IMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQ 361
+ +R L P++VF FSKK CE YA + +NF +E + ++ L +EDR LPQ
Sbjct: 621 LRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQ 680
Query: 362 IENILPLLRRGIGIHHG 378
I LL RGI +HHG
Sbjct: 681 ILKTRSLLERGIAVHHG 697
>gi|74676014|sp|O59801.1|SKI2_SCHPO RecName: Full=Putative ATP-dependent RNA helicase C550.03c
Length = 1213
Score = 290 bits (741), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 159/350 (45%), Positives = 215/350 (61%), Gaps = 24/350 (6%)
Query: 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110
A ++PF LD FQKEAI +E SV V+AHTSAGKTVVAEYAIA + K + IYT+PIK
Sbjct: 274 ALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYTSPIK 333
Query: 111 ALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFD 170
ALSNQK+R+F+ +F+DVG++TGDV +NP SCL+MTTEILR+MLYRG+++ R+V +VIFD
Sbjct: 334 ALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIRDVEFVIFD 393
Query: 171 EIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR 230
E+HY+ D ERG VWEE +I+L +V + LSAT+PN +FA WV + +V+ T R
Sbjct: 394 EVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNIYVISTLKR 453
Query: 231 PTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLANAGDAAKAGDHKGG---RKGG 286
P PL+HYL+ + IVD + +F Y+ A + L A D+K R
Sbjct: 454 PVPLEHYLWVK--QNMFKIVDQHGRFLMDGYKSANDALKKPDKPVIAKDNKNSARGRGAA 511
Query: 287 PKGGVQTNCFK------------------IVKMIMERNLAPVIVFSFSKKDCEIYAMQMA 328
GVQTN + ++ + ++NL PVIVF FSKK CE Y +
Sbjct: 512 RGRGVQTNMMRGRGSAKSVERRDANTWVHLIGHLHKQNLLPVIVFVFSKKRCEEYVDTLT 571
Query: 329 KLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
+ N +E V V A+ L +EDR LPQI + +L RG+ +HHG
Sbjct: 572 NRDLNNHQEKSEVHVVIEKAVARLKKEDRLLPQIGRMREMLSRGLAVHHG 621
>gi|313104288|sp|Q15477.3|SKIV2_HUMAN RecName: Full=Helicase SKI2W; Short=Ski2; AltName:
Full=Helicase-like protein; Short=HLP
Length = 1246
Score = 289 bits (739), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 150/340 (44%), Positives = 210/340 (61%), Gaps = 7/340 (2%)
Query: 49 KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108
+PA ++ F D FQK+AIL +E + SV V+AHTSAGKTVVAEYAIA + K R IYT+P
Sbjct: 302 QPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP 361
Query: 109 IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168
IKALSNQK+R+F F DVGL+TGDV ++P +SCLIMTTEILR+MLY GS++ R++ WVI
Sbjct: 362 IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI 421
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
FDE+HY+ D ERG VWEE LI+L D+V + LSAT+PNA +FA W+ L + +V+ T
Sbjct: 422 FDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV 481
Query: 229 YRPTPLQHYLFPNGGD---GIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKG 285
RP PL+HYLF G ++ D++ H V A +K G ++
Sbjct: 482 TRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 541
Query: 286 GPKGGVQTN---CFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342
+GG + ++ + R PV+VF+FS+ C+ A + L+ + E +
Sbjct: 542 THQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH 601
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
+ L DR+LPQ+ ++ LL RG+G+HH G+ P
Sbjct: 602 LFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILP 641
>gi|1731349|sp|Q10701.1|HELY_MYCTU RecName: Full=Probable helicase HelY
Length = 906
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/343 (32%), Positives = 175/343 (51%), Gaps = 29/343 (8%)
Query: 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112
E PF LD FQ+ A +E VLV A T AGKTVV E+A+ +L + YTTP+KAL
Sbjct: 13 ELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKAL 72
Query: 113 SNQKYREFEEQF--KDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFD 170
SNQK+ + ++ +GL+TGD+++N ++ ++MTTE+LRNMLY S + + +V+ D
Sbjct: 73 SNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYVVMD 132
Query: 171 EIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR 230
E+H++ D+ RG VWEE ++ L D+VR V LSAT+ NA +F W+ + VV ++R
Sbjct: 133 EVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGD-TTVVVDEHR 191
Query: 231 PTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVA------------MNVLANAGDAAKAGD 278
P PL H++V F +Y++ + +A+ +A + D
Sbjct: 192 PVPLWQ----------HVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMAD 241
Query: 279 HKGGRKGGPKGGVQTNCFK--IVKMIMERNLAPVIVFSFSKKDCEIYAMQ--MAKLNFNE 334
+ R+G + G + ++ + L P I F FS+ C+ Q + L
Sbjct: 242 WQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTS 301
Query: 335 TEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH 377
EE + +V + L++ D + L RG+ HH
Sbjct: 302 EEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHH 344
>gi|18203674|sp|Q9ZBD8.1|HELY_MYCLE RecName: Full=Probable helicase HelY
Length = 920
Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 119/351 (33%), Positives = 179/351 (50%), Gaps = 33/351 (9%)
Query: 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112
E PF LD FQ+ A +E VLV A T AGKTVV E+A+ +L + YTTP+KAL
Sbjct: 13 ELPFSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFYTTPLKAL 72
Query: 113 SNQKYREFEEQF--KDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFD 170
SNQKY + ++ +GL+TGD ++N S ++MTTE+LRNMLY S + + V+ D
Sbjct: 73 SNQKYTDLTARYGRNRIGLLTGDQSVNGDSPVVVMTTEVLRNMLYADSFALQGLSHVVMD 132
Query: 171 EIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR 230
E+H++ D+ RG VWEE ++ L D+VR V LSAT+ NA +F WV + VV ++R
Sbjct: 133 EVHFIADRMRGPVWEEVILHLPDDVRMVSLSATVSNAEEFGGWVQTVRGDTT-VVVDEHR 191
Query: 231 PTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQ-------VAMNVL---ANAGDAAKAGDHK 280
P PL H++V F +Y V N+L A+ +A + D +
Sbjct: 192 PVPLWQ----------HVLVGKRLFDLFDYDSNVDQSPVNPNLLRHIAHCREADRMSDWR 241
Query: 281 GGRKGGPKG-GVQTNCFK------IVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK--LN 331
R+ +G GV+ ++ ++ ++ L P I F FS+ C+ Q + L
Sbjct: 242 NPRRRAGRGSGVRPRFYRSLARPEVIAILDAEGLLPAITFVFSRFGCDAAVQQCLRSPLR 301
Query: 332 FNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
EE + +V + L++ D + L RG+ HH G+ P
Sbjct: 302 LTSEEERAQIAEVIDHRCGDLADADLAVLGYYEWREGLLRGLAAHHAGMLP 352
>gi|298351833|sp|B9DFG3.2|ISE2_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase ISE2,
chloroplastic; AltName: Full=Protein EMBRYO DEFECTIVE
25; AltName: Full=Protein INCREASED SIZE EXCLUSION LIMIT
2; AltName: Full=Protein PIGMENT DEFECTIVE 317; Flags:
Precursor
Length = 1171
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 129/375 (34%), Positives = 191/375 (50%), Gaps = 55/375 (14%)
Query: 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113
Y F +D FQ+ AI SV+VSA TS+GKT++AE A S++ + +R+ YTTP+KALS
Sbjct: 151 YDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALS 210
Query: 114 NQKYREFEEQFKD--VGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITRE------VG 165
NQK+REF E F D VGL+TGD IN + +IMTTEILRNMLY+ + V
Sbjct: 211 NQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVD 270
Query: 166 WVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVV 225
++ DE+HY+ D RG VWEE +I V+ + LSAT+ N + A W+ +H + +V
Sbjct: 271 AIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGEIHGK-TELV 329
Query: 226 YTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGG--- 282
+ RP PL Y F + L+ D K N ++++N L + A+ D G
Sbjct: 330 TSTRRPVPLTWY-FSTKHSLLPLL--DEKGINVNRKLSLNYLQLSASEARFRDDDDGYRK 386
Query: 283 RKGGPKGG-------VQTNCFKIVK-------------------MIMERNLAPVIVFSFS 316
R+ +GG V + + K + +N+ P I F F+
Sbjct: 387 RRSKKRGGDTSYNNLVNVTDYPLSKNEINKIRRSQVPQISDTLWHLQGKNMLPAIWFIFN 446
Query: 317 KKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKL-PQI--ENILPLLRRGI 373
++ C+ A+Q E +L+DD + +++ ++ R L P E+ L RGI
Sbjct: 447 RRGCDA-AVQY-------VENFQLLDDCEKSEVELALKKFRVLYPDAVRESAEKGLLRGI 498
Query: 374 GIHH-GVKPYGLWQS 387
HH G P LW+S
Sbjct: 499 AAHHAGCLP--LWKS 511
>gi|121723841|sp|Q4JC00.1|HELS_SULAC RecName: Full=Putative ski2-type helicase
Length = 705
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/343 (27%), Positives = 167/343 (48%), Gaps = 63/343 (18%)
Query: 58 LDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQ 115
L+P Q EA+ + ++ +L++ T++GKT++AE + S L + + IY TP++AL+++
Sbjct: 27 LNPPQTEAVKKGLIEDKRLLITTPTASGKTLMAELGMISHLLNKGGKAIYVTPLRALTSE 86
Query: 116 KYREFEEQFK---DVGLITGDV-TINP---SSSCLIMTTEILRNMLYRGSEITREVGWVI 168
KY F++ K VG+ +GD T +P + ++ T E L ++ +E +++ + +
Sbjct: 87 KYSTFKDWEKLGFKVGVTSGDYDTDDPWLRNFDIIVTTYEKLDSLWRHSAEWLKDIDYFV 146
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
DE HYM D +RG V E + + LSATI NA A+W++ +V T+
Sbjct: 147 LDEFHYMNDGDRGPVVEGVAVRAKRQGTILALSATIGNAKDVAKWLN------ADIVATN 200
Query: 229 YRPTPLQHYLFPNGGDGIHLIV----DDNKFKEHNYQVA--MNVLANAGDAAKAGDHKGG 282
+RP PL+ + + G H+I+ NK K + +A +++L+ KGG
Sbjct: 201 WRPVPLKEGVMYSEGKKGHIILYSDGTTNKLKGDDPIIAYTLDILS-----------KGG 249
Query: 283 RKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK-LNFNETEEVKLV 341
+ VIVF S+K E AM++++ +NF + ++ KL+
Sbjct: 250 Q--------------------------VIVFRSSRKYAETTAMKISQYMNFVKLDDKKLL 283
Query: 342 DDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGL 384
+ A + ED + E + L+ RG+ HH GL
Sbjct: 284 E----TAERIKEVEDAGSNEKEVLYNLIVRGVAFHHAGLSKGL 322
>gi|18202974|sp|Q9HJX7.1|HELS_THEAC RecName: Full=Putative ski2-type helicase
Length = 674
Score = 99.0 bits (245), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/334 (26%), Positives = 154/334 (46%), Gaps = 72/334 (21%)
Query: 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQ 115
F L Q+ AI I ++V+VS T+AGKT++A AI + +++ + IY P+++L+ +
Sbjct: 21 FQLYDHQRMAIEQIRKGRNVVVSVPTAAGKTLIAYSAIYETFQRNLKSIYIVPLRSLAME 80
Query: 116 KYREFEEQFKDVGLIT----GDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWV 167
K+ E + +D+GL GD +P +I+T+E ++L+ I +VG +
Sbjct: 81 KFSEL-SRLRDLGLKVKMSIGDYDDSPDFIKRYDAVILTSEKADSLLHHDPYILNDVGLL 139
Query: 168 IFDEIHYMRDKERGYVWEETLIL---LSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV 224
+ DEIH + D+ RG E + ++ +VR + LSAT+ NA + A W+ +
Sbjct: 140 VLDEIHTIGDESRGPTLETVASIARYVNPDVRILALSATVSNAMELASWLD------ASL 193
Query: 225 VYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRK 284
+ +D+RP PL+ + +++ Y
Sbjct: 194 IKSDFRPVPLKTGIL---------------YRDQLYL----------------------D 216
Query: 285 GGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDV 344
G + GV N +I++ +E N V++F S+K E A +A++ F +K+ D
Sbjct: 217 GKRRSGVSIN--QIIRETVEDN-GQVLMFVSSRKKAEDTARDLAQI-FGSDANIKISSDE 272
Query: 345 FSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
+ D+L+E ILP RG+ HH
Sbjct: 273 TNVYDDMLNE----------ILP---RGVAFHHA 293
>gi|24418452|sp|Q974S1.1|HELS_SULTO RecName: Full=Putative ski2-type helicase
Length = 704
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 155/337 (45%), Gaps = 52/337 (15%)
Query: 58 LDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQ 115
L+P Q EAI + + + +LV++ T++GKT++AE + + L + + IY TP++AL+N+
Sbjct: 27 LNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMINYLLSKGGKAIYITPLRALTNE 86
Query: 116 KYREFEEQFK---DVGLITGDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWVI 168
KY F++ G+ +GD + + ++ T E L ++ ++ EV + +
Sbjct: 87 KYNTFKDWETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDSLWRHKAKWLNEVSYFV 146
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
DE HY+ D ERG E I + LSATI N + A W++ +V T+
Sbjct: 147 LDEFHYLNDPERGPTVESVAIRAKKRGIVLGLSATISNGKEIANWLN------AELVATN 200
Query: 229 YRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPK 288
+RP PL+ + G ++ DN ++ A ++A D KGG+
Sbjct: 201 WRPVPLKEGIIYPEKKGFVVVYKDNTSRKVYGDDA--IIAYTLDIV----SKGGQ----- 249
Query: 289 GGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK-LNFNETEEVKLVDDVFSN 347
V+VF S+K E A ++ + +NF + E+ KL++
Sbjct: 250 ---------------------VLVFRSSRKLAENTARKIVQYMNFVKLEDKKLLE----I 284
Query: 348 AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGL 384
A + ED + E++ L+ RG+ HH GL
Sbjct: 285 ARKIKEVEDAGSNEKEDLYNLVLRGVAYHHAGLSKGL 321
>gi|18203529|sp|Q9V0A9.1|HELS_PYRAB RecName: Full=Putative ski2-type helicase
Length = 715
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 105/194 (54%), Gaps = 15/194 (7%)
Query: 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQ 115
L P Q EA+ + +++LV+ T++GKT++AE AIA+ L ++ + +Y P+KAL+ +
Sbjct: 24 LYPPQAEALTSGVLEGENLLVAIPTASGKTLIAEIAIANKLLEEGGKAVYIVPLKALAEE 83
Query: 116 KYREFEEQFK---DVGLITGDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWVI 168
K+REF++ + V + TGD +I T E ++L GS R+V ++
Sbjct: 84 KFREFKDWERLGLKVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIRDVKMLV 143
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
DEIH + ++RG E + + + + LSATI N + A+W++ ++ +D
Sbjct: 144 IDEIHLIGSRDRGATLEFIITQMLGRAQIIGLSATIGNPEELAEWLN------AKLIRSD 197
Query: 229 YRPTPLQHYLFPNG 242
+RP L+ +F G
Sbjct: 198 WRPVKLRKGVFYQG 211
>gi|121689265|sp|Q12WZ6.1|HELS_METBU RecName: Full=Putative ski2-type helicase
Length = 760
Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/334 (24%), Positives = 156/334 (46%), Gaps = 63/334 (18%)
Query: 60 PFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYR 118
P Q EAI + + +++L + T++GKT++AE A+ ++++ + +Y P++AL+++K+
Sbjct: 26 PPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGGKALYIVPLRALASEKFE 85
Query: 119 EFEEQFK---DVGLITGDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWVIFDE 171
F+E VG+ TGD+ + ++ T+E ++L G+ E+ V+ DE
Sbjct: 86 RFKELAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSLLRNGTSWMDEITTVVVDE 145
Query: 172 IHYMRDKERGYVWEET---LILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
IH + K RG E T L+ L+ +V+ V LSAT+ NA + A W+ +V ++
Sbjct: 146 IHLLDSKNRGPTLEVTITKLMRLNPDVQVVALSATVGNAREMADWLG------AALVLSE 199
Query: 229 YRPTPL-QHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGP 287
+RPT L + LF GD I+ K A+N++ D KA
Sbjct: 200 WRPTDLHEGVLF---GDAINFPGSQKKIDRLEKDDAVNLVL---DTIKA----------- 242
Query: 288 KGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSN 347
+ C +VF S+++C +A + ++ K++D+
Sbjct: 243 ----EGQC---------------LVFESSRRNCAGFAKTAS------SKVAKILDNDIMI 277
Query: 348 AMDVLSEEDRKLPQIENILPL---LRRGIGIHHG 378
+ ++EE + + + L +R+G+ HH
Sbjct: 278 KLAGIAEEVESTGETDTAIVLANCIRKGVAFHHA 311
>gi|18202084|sp|O59025.1|HELS_PYRHO RecName: Full=Putative ski2-type helicase
Length = 715
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 102/194 (52%), Gaps = 15/194 (7%)
Query: 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQ 115
L P Q EA+ I ++ L++ T++GKT++AE AI + L K+ + +Y P+KAL+ +
Sbjct: 24 LYPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLLKEGGKAVYLVPLKALAEE 83
Query: 116 KYREF---EEQFKDVGLITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREVGWVI 168
K++EF EE V + TGD +I T E ++L GS R V ++
Sbjct: 84 KFKEFKDWEELGLKVAMATGDYDSKDEWLGGYDIIIATAEKFDSLLRHGSSWIRNVKVLV 143
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
DEIH + ++RG E + + + + + LSATI N + A+W++ ++ +D
Sbjct: 144 VDEIHLIGSRDRGATLEFIITQMLNRAQIIGLSATIGNPEELAEWLN------AKLIKSD 197
Query: 229 YRPTPLQHYLFPNG 242
+RP L+ +F G
Sbjct: 198 WRPVKLRRGVFYQG 211
>gi|150421571|sp|Q9YFQ8.2|HELS_AERPE RecName: Full=Putative ski2-type helicase
Length = 735
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 23/191 (12%)
Query: 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ-RVIYTTPIKALSNQKYREFEEQFKDV 127
+E ++++V+A T +GKT +A AI +SL ++ R Y P+K+++ +KY F +
Sbjct: 40 VEKGENLVVAAPTGSGKTFIALVAIVNSLARAGGRAFYLVPLKSVAYEKYTSFS-ILSRM 98
Query: 128 GL----ITGDVTINPSSSCLIMTT-EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGY 182
GL GD P + +++ T E ++L + R V +I DEIH + D +RG
Sbjct: 99 GLKLKISVGDFREGPPEAPVVIATYEKFDSLLRVSPSLARNVSVLIVDEIHSVSDPKRGP 158
Query: 183 VWEET---LILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLF 239
+ E ++ + + V LSAT+PNA + A+W+ +V + +RP PL+ Y+F
Sbjct: 159 ILESIVSRMLASAGEAQLVGLSATVPNAGEIAEWIG------GKIVESSWRPVPLREYVF 212
Query: 240 -------PNGG 243
P GG
Sbjct: 213 KEYKLYSPTGG 223
>gi|18202627|sp|Q97VY9.1|HELS_SULSO RecName: Full=Putative ski2-type helicase
Length = 708
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 154/335 (45%), Gaps = 59/335 (17%)
Query: 58 LDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIAS-SLKQSQRVIYTTPIKALSNQ 115
L+P Q EA+ + + +L+++ T +GKT++AE I S LK + IY TP++AL+N+
Sbjct: 24 LNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNE 83
Query: 116 KYREFEE----QFKDVGLITGDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWV 167
KY F++ FK V + +GD + + +I T E L ++ + E +
Sbjct: 84 KYLTFKDWESIGFK-VAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPDWLNEANYF 142
Query: 168 IFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT 227
+ DE+HY+ D ERG V E++ + + + LSATI N Q A+W L +P V T
Sbjct: 143 VLDELHYLNDPERGPV-VESVTIRAKRRNLLALSATISNYKQIAKW---LGAEP---VAT 195
Query: 228 DYRPTPL-QHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL--ANAGDAAKAGDHKGGRK 284
++RP PL + ++P + K KE+ N + DA A K
Sbjct: 196 NWRPVPLMEGVMYP-----------ERKKKEYTILFRDNTARKVHGDDAIIAYTLDSLSK 244
Query: 285 GGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK-LNFNETEEVKLVDD 343
G V+VF S+K E A+++A +NF +E K + +
Sbjct: 245 NG----------------------QVLVFRNSRKMAESTALKIANYMNFVSLDE-KAISE 281
Query: 344 VFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
+ D+ E+ + E + L+ +G+ HH
Sbjct: 282 ILKQLDDI---EEGGSDEKELLKSLISKGVAYHHA 313
>gi|74698339|sp|Q9P7T8.1|YIW2_SCHPO RecName: Full=Uncharacterized helicase C694.02
Length = 1717
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 112/213 (52%), Gaps = 23/213 (10%)
Query: 50 PAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR--VIYTT 107
P F D +Q+E + ++ ++SV V A TS+GKT ++ YA+ L+ + VIY
Sbjct: 728 PDSRVAFDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVA 787
Query: 108 PIKALSNQK----YREFEEQFKDVG-----LITGDVTINPSSSCLIMTT--EILRNMLYR 156
P KAL NQ Y F + + G + T D IN ++C ++ T +L++ML +
Sbjct: 788 PTKALVNQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQ 847
Query: 157 ---GSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQW 213
+ ++ +IFDEIH + E G V EE L+LL+ V LSAT+ N +F W
Sbjct: 848 PALANAWCPKIRRIIFDEIHCIGQMEDGLV-EEQLLLLAP-CPIVALSATVGNPQEFQVW 905
Query: 214 VSHL---HHQPCHVVYTDYRPTPLQHYLFPNGG 243
+S L H P H++ ++R + L+ +++ GG
Sbjct: 906 LSALQRAHSYPIHLIVHEHRYSDLRKFVY--GG 936
>gi|68052079|sp|Q5UYM9.1|HELS_HALMA RecName: Full=Putative ski2-type helicase
Length = 799
Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 87/335 (25%), Positives = 149/335 (44%), Gaps = 65/335 (19%)
Query: 60 PFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYR 118
P Q EA+ + ++++ S T++GKT++AE A+ SS+ + + +Y P++AL+++K
Sbjct: 27 PPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLSSVARGGKALYIVPLRALASEKQA 86
Query: 119 EFEEQFKDVGLITGDVTINPSS--------SCLIMTTEILRNMLYRGSEITREVGWVIFD 170
+FEE F+ GL G T N S ++ T+E + +++ + ++ V+ D
Sbjct: 87 DFEE-FEQYGLDIGVSTGNYESEGGWLADKDIVVATSEKVDSLVRNDAPWIEDLTCVVTD 145
Query: 171 EIHYMRDKERGYVWEETLI---LLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT 227
E+H + D ERG E TL L+ +++ V LSATI NA A W+ +V +
Sbjct: 146 EVHLVDDGERGPTLEVTLAKLRRLNPDLQTVALSATIGNAEALATWLD------AGLVDS 199
Query: 228 DYRPTPLQ---HYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRK 284
D+RP LQ HY G +HL E Q ++V N
Sbjct: 200 DWRPIDLQKGVHY-----GQALHL--------EDGSQQRLSVQNN--------------- 231
Query: 285 GGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL--NFNETEEVKLVD 342
+ IV+ +E + +VF S+++ E A ++A TEE +
Sbjct: 232 -------EKQTAAIVRDTLEDD-GSTLVFVNSRRNAEAAAGRLANTVRPHLSTEERDQLA 283
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH 377
D+ DV E +++ + G HH
Sbjct: 284 DIAEEIRDVSDTE-----TSDDLADAVADGAAFHH 313
>gi|24418453|sp|Q97AI2.1|HELS_THEVO RecName: Full=Putative ski2-type helicase
Length = 674
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 102/191 (53%), Gaps = 18/191 (9%)
Query: 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQ 115
F L Q+ AI ++++VS T+AGKT++A AI + K+ + IY P+++L+ +
Sbjct: 21 FELYDHQRMAIEQFRKGKNIMVSVPTAAGKTLIAYSAIYETFKKKLKSIYIVPLRSLAME 80
Query: 116 KYREFEEQFKDVG----LITGDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWV 167
KY E + +++G L G+ P +I+T+E ++++ + EVG +
Sbjct: 81 KYEEL-SRLRELGMRVKLSIGNYDDTPDFIKRYDVVILTSEKADSLMHHDPYMMEEVGLM 139
Query: 168 IFDEIHYMRDKERGYVWEETLIL---LSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV 224
+ DEIH + D+ RG E + ++ R + LSAT+ NAS+ A+W++ +
Sbjct: 140 VIDEIHMIGDEYRGPTLETVITTARYVNPETRIIALSATVSNASEIAEWLN------ASL 193
Query: 225 VYTDYRPTPLQ 235
+ + +RP PL+
Sbjct: 194 IKSSFRPVPLK 204
>gi|18202135|sp|O73946.1|HELS_PYRFU RecName: Full=Putative ski2-type helicase
Length = 720
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 100/192 (52%), Gaps = 15/192 (7%)
Query: 60 PFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKY 117
P Q EA+ I ++ L+S T++GKT++AE A+ L Q + +Y P+KAL+ +K+
Sbjct: 26 PPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKF 85
Query: 118 REFEEQFK---DVGLITGDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWVIFD 170
+EF++ K V + TGD +I T E ++L GS ++V ++ D
Sbjct: 86 QEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVAD 145
Query: 171 EIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR 230
EIH + ++RG E L + + + LSATI N + A+W++ ++ +D+R
Sbjct: 146 EIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLN------AELIVSDWR 199
Query: 231 PTPLQHYLFPNG 242
P L+ +F G
Sbjct: 200 PVKLRRGVFYQG 211
>gi|121690545|sp|Q0W6L1.1|HELS_UNCMA RecName: Full=Putative ski2-type helicase
Length = 740
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 101/198 (51%), Gaps = 22/198 (11%)
Query: 58 LDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116
L P Q EAI + + +++L + T++GKT++AE A+ S+ + + IY P+KAL+++K
Sbjct: 24 LYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLKSIAEGGKAIYIVPLKALASEK 83
Query: 117 YREFEEQFK--------DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREV 164
Y F E K VG+ TGD ++ T+E ++L G+ +
Sbjct: 84 YDRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVATSEKTDSLLRNGASWLSGL 143
Query: 165 GWVIFDEIHYMRDKERGYVWEETLILLSD---NVRFVFLSATIPNASQFAQWVSHLHHQP 221
V+ DE+H + RG E TL L N++ + LSATI NA A+W+
Sbjct: 144 SVVVADEVHLIDSPNRGPTLEVTLAKLRKINVNLQILALSATIGNAKALAKWMD------ 197
Query: 222 CHVVYTDYRPTPLQHYLF 239
+V +++RPT L+ +F
Sbjct: 198 AALVQSEWRPTTLKEGVF 215
>gi|18202572|sp|Q58524.1|HELS_METJA RecName: Full=Putative ski2-type helicase; Contains: RecName:
Full=Endonuclease PI-MjaHel; AltName: Full=Mja Hel
intein; AltName: Full=Mja Pep3 intein
Length = 1195
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/200 (30%), Positives = 107/200 (53%), Gaps = 22/200 (11%)
Query: 58 LDPFQKEAIL--CIENNQSVLVSAHTSAGKTVVAEYAIASSL------KQSQRVIYTTPI 109
L P QK+A+ ++ N++ L+S T++GKT++ E A+ + L +++ I+ P+
Sbjct: 16 LRPPQKKALERGLLDKNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPL 75
Query: 110 KALSNQKYREFEEQFKDVG----LITGDVTINPSSS---CLIMTTEILRNMLYRGSEITR 162
KAL+++KY EF+ +++ G L GD + S +I T E L ++ +
Sbjct: 76 KALASEKYEEFKSKYERYGLRIALSIGDYDEDEDLSKYHLIITTAEKLDSLWRHKIDWIN 135
Query: 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSD-NVRFVFLSATIPNASQFAQWVSHLHHQP 221
+V V+ DEIH + D+ RG E L L + NV+ + LSATI N + A+W++
Sbjct: 136 DVSVVVVDEIHLINDETRGGTLEILLTKLKEFNVQIIGLSATIGNPDELAEWLN------ 189
Query: 222 CHVVYTDYRPTPLQHYLFPN 241
++ D+RP L+ ++ N
Sbjct: 190 AELIVDDWRPVELKKGIYKN 209
>gi|226740606|sp|A7IB61.1|HELS_METB6 RecName: Full=Putative ski2-type helicase
Length = 723
Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 95/183 (51%), Gaps = 17/183 (9%)
Query: 68 CIE----NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQ 123
C+E + +++LV+ T++GKT++AE A+ + + +Y P+KAL+++KY EF +
Sbjct: 31 CVERGLLDGKNLLVAIPTASGKTLIAEMAMHRHIANGGKCLYIVPLKALASEKYEEFGNK 90
Query: 124 FKDVGLITGDVTINPSS----SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179
VGL TGD+ + ++ T+E + ++L G+ ++ V+ DEIH + +
Sbjct: 91 GVKVGLSTGDLDRRDDALGKNDIIVATSEKVDSLLRNGARWIPDITLVVIDEIHLIDSPD 150
Query: 180 RGYVWEETLILLSD---NVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQH 236
RG E + + ++ + LSATI N A W+ +V + +RP L+
Sbjct: 151 RGPTLEMVIAKMRSKNPGMQLIGLSATIGNPKVLAGWLD------AELVTSSWRPVDLRQ 204
Query: 237 YLF 239
+F
Sbjct: 205 GVF 207
>gi|18201992|sp|O26901.1|HELS_METTH RecName: Full=Putative ski2-type helicase
Length = 690
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 108/212 (50%), Gaps = 26/212 (12%)
Query: 33 ALPPDLEYQPLAQSKEKPAREYPFV--LDPFQKEAILC--IENNQSVLVSAHTSAGKTVV 88
+LPP++ Q L YP + L+P Q+ AI +E+ + +++ T++GKT++
Sbjct: 3 SLPPEMR-QILGDC-------YPHIRELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLL 54
Query: 89 AEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCL-IMTT 147
A ++ + RVIYT P+ ++ N+K +EF + ++ G+ G +P +S + +M
Sbjct: 55 GIIAALKTVMEGGRVIYTVPLLSIQNEKIKEF-RKLEEHGIRVGK---DPRTSDIAVMVF 110
Query: 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI---LLSDNVRFVFLSATI 204
E ++ I REV +I DE H + + RG V E + L+ +VR V LSAT+
Sbjct: 111 ESFDSLTRFSWNILREVDLLIVDEFHMIGEYTRGPVIESAITRARTLNPSVRIVALSATL 170
Query: 205 PNASQFAQWVSHLHHQPCHVVYTDYRPTPLQH 236
N + A W+ VV DYRP PL
Sbjct: 171 SNMDEIAGWLD------ARVVEHDYRPVPLHR 196
>gi|121723325|sp|Q465R3.1|HELS_METBF RecName: Full=Putative ski2-type helicase
Length = 729
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 105/196 (53%), Gaps = 17/196 (8%)
Query: 58 LDPFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116
L P Q EA+ + +++L + T++GKT++AE A+ S+ + +Y P++AL+++K
Sbjct: 24 LYPPQAEAVEKGLLEGRNLLAAIPTASGKTLLAELAMLKSILAGGKALYIVPLRALASEK 83
Query: 117 ---YREFEEQFKDVGLITGDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWVIF 169
+REF E VG+ TGD + + ++ T+E ++L + +E+ V+
Sbjct: 84 FRRFREFSELGIRVGISTGDYDLRDEGLGVNDIIVATSEKTDSLLRNETVWMQEISVVVA 143
Query: 170 DEIHYMRDKERGYVWEETLILL---SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVY 226
DE+H + +RG E TL L + + + + LSAT+ NA + A W+ +V
Sbjct: 144 DEVHLIDSPDRGPTLEVTLAKLRKMNPSCQILALSATVGNADELAVWLE------AELVV 197
Query: 227 TDYRPTPLQHYLFPNG 242
+++RPT L +F NG
Sbjct: 198 SEWRPTELLEGVFFNG 213
>gi|24418450|sp|Q8PZR7.1|HELS_METMA RecName: Full=Putative ski2-type helicase
Length = 730
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 106/199 (53%), Gaps = 23/199 (11%)
Query: 58 LDPFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116
L P Q EA+ + +++L + T++GKT++AE A+ S+ + +Y P++AL+++K
Sbjct: 24 LYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLNGGKALYIVPLRALASEK 83
Query: 117 YREFEE---QFKDVGLITGD-------VTINPSSSCLIMTTEILRNMLYRGSEITREVGW 166
+R F+E VG+ TGD + IN ++ T+E ++L + +E+
Sbjct: 84 FRRFQEFSVLGMRVGISTGDYDRRDEGLGIN---DIIVATSEKTDSLLRNETAWMQEISV 140
Query: 167 VIFDEIHYMRDKERGYVWEETLILL---SDNVRFVFLSATIPNASQFAQWVSHLHHQPCH 223
V+ DE+H + +RG E TL L + + + + LSAT+ NA + A W+
Sbjct: 141 VVADEVHLIDSPDRGPTLEITLSKLRRMNPSCQVLALSATVGNADELAAWLD------AE 194
Query: 224 VVYTDYRPTPLQHYLFPNG 242
+V +++RPT L +F NG
Sbjct: 195 LVLSEWRPTDLMEGVFYNG 213
>gi|68052052|sp|Q5JGV6.1|HELS_PYRKO RecName: Full=Putative ski2-type helicase; Contains: RecName:
Full=Endonuclease PI-PkoHel; AltName: Full=Pko Hel
intein
Length = 1125
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 115/230 (50%), Gaps = 25/230 (10%)
Query: 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQ 115
L P Q EA+ + ++++++ T++GKT+V+E + + L + + +Y P+KAL+ +
Sbjct: 24 LYPPQAEALKSGVLEGKNLVLAIPTASGKTLVSEIVMVNKLLSEGGKAVYLVPLKALAEE 83
Query: 116 KYREFEEQFKDVGLITGDVTINPSSS--------CLIMTTEILRNMLYRGSEITREVGWV 167
KYREF+E ++ +GL T + S+ ++ T E ++L G+ ++V V
Sbjct: 84 KYREFKE-WEVLGLRVAATTGDYDSTDEWLGRYDIIVATAEKFDSLLRHGASWIKDVKLV 142
Query: 168 IFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT 227
+ DE+H + +RG E L + + + LSAT+ NA + A+W+ +V +
Sbjct: 143 VADEVHLIGSYDRGATLEMILTHMLGKAQILALSATVGNAEELAEWLD------ASLVVS 196
Query: 228 DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAG 277
D+RP L+ +F G L +D K + VL DA K G
Sbjct: 197 DWRPVELRKGVFHLG----QLFWEDGKIDHYPENWESLVL----DAVKKG 238
>gi|24418451|sp|Q8TL39.1|HELS_METAC RecName: Full=Putative ski2-type helicase
Length = 730
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 106/200 (53%), Gaps = 25/200 (12%)
Query: 58 LDPFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116
L P Q EA+ + +++L + T++GKT++AE A+ S+ + +Y P++AL+++K
Sbjct: 24 LYPPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLKSVLAGGKALYIVPLRALASEK 83
Query: 117 YREFEEQFKD----VGLITGD-------VTINPSSSCLIMTTEILRNMLYRGSEITREVG 165
+R F++ F + VG+ TGD + IN ++ T+E ++L + +E+
Sbjct: 84 FRRFQD-FSELGIRVGISTGDYDRRDEGLGIN---DIIVATSEKTDSLLRNETAWMQEIS 139
Query: 166 WVIFDEIHYMRDKERGYVWEETLILLSDNVRF---VFLSATIPNASQFAQWVSHLHHQPC 222
V+ DE+H + +RG E TL L F + LSAT+ NA + A W+
Sbjct: 140 VVVVDEVHLIDSADRGPTLEVTLAKLRKMNPFCQILALSATVGNADELAAWLD------A 193
Query: 223 HVVYTDYRPTPLQHYLFPNG 242
+V +++RPT L +F +G
Sbjct: 194 ELVLSEWRPTDLMEGVFFDG 213
>gi|121696877|sp|Q3IU46.1|HELS_NATPD RecName: Full=Putative ski2-type helicase
Length = 747
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 143/318 (44%), Gaps = 58/318 (18%)
Query: 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYRE---FEEQFKDVGL 129
+S++ S T++GKT+VA+ A+ S++ + +Y P++AL+++K E FEE VG+
Sbjct: 41 ESLVASVPTASGKTLVAQLAMLSAIDRGGTALYIVPLRALASEKREEFAAFEEYGLSVGV 100
Query: 130 ITGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185
TG ++ T+E + +++ G+ ++ V+ DE+H + D+ RG E
Sbjct: 101 TTGSYEDTGEWLADKDIIVATSEKVDSLVRNGAPWIDDLDCVVADEVHLVDDEHRGPTLE 160
Query: 186 ETLILL---SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNG 242
TL L + N++ V LSAT+ NA + A+W+ +V + +RP L+
Sbjct: 161 VTLAKLRRVNPNLQVVALSATVGNAGEMAEWLD------AELVDSSWRPIELRK------ 208
Query: 243 GDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMI 302
G+H G A GD G ++ P + +V+
Sbjct: 209 --GVHY----------------------GQALHFGD--GTQQELPVQRTEKPTEAVVRET 242
Query: 303 MERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQI 362
++ +VF S+++ E A ++AK V +D A+ L+EE R +
Sbjct: 243 LDEG-GSTLVFVNSRRNAEGAAKRLAKTT------VDGLDADERAALSSLAEEIRAVSDT 295
Query: 363 E---NILPLLRRGIGIHH 377
E ++ + +G HH
Sbjct: 296 ETSDDLADCVEQGAAFHH 313
>gi|226740607|sp|A6UN73.1|HELS_METVS RecName: Full=Putative ski2-type helicase
Length = 751
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 156/349 (44%), Gaps = 69/349 (19%)
Query: 58 LDPFQKEAIL--CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVIYTTPI 109
L P QK+ I ++ +++ L+ T++GKT++ E A+ + + ++ ++ P+
Sbjct: 16 LRPPQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVPL 75
Query: 110 KALSNQKYREFEEQFK----DVGLITGDVTINPSSS---CLIMTTEILRNMLYRGSEITR 162
KAL+++K+ EF+++++ VG+ GD S +I T+E L +++ E +
Sbjct: 76 KALASEKFDEFQKKYETYGIKVGMSIGDYDTKEDLSKYNIIITTSEKLDSLMRHNIEWIK 135
Query: 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSD-NVRFVFLSATIPNASQFAQWVSHLHHQP 221
++ + DEIH + D ERG E L L + N + V LSAT+ N + A W++
Sbjct: 136 DLSLAVIDEIHLIGDNERGGTLEVILTKLKNINAQIVGLSATVGNPEEIANWLN------ 189
Query: 222 CHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKG 281
+V ++RP L+ GI+L E NY N D+
Sbjct: 190 AKLVTDEWRPVELKK--------GIYL------ENEINY-------INNQDS-------- 220
Query: 282 GRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKK-DCEIY-------AMQMAKLNFN 333
Q FK VK I NL +IV S ++K C I+ + K N
Sbjct: 221 ----------QKKSFKAVKSISRNNLTDLIVDSVNEKGSCLIFCNSKRNAVGESKKHNLT 270
Query: 334 ETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPY 382
+ ++D+ S + ++LS + +++ +++G+ HH Y
Sbjct: 271 KYLSKAELNDLNSISEEILSILETPTETCKSLSECIKKGVAFHHAGLTY 319
>gi|226740604|sp|A8MB76.1|HELS_CALMQ RecName: Full=Putative ski2-type helicase
Length = 756
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 105/198 (53%), Gaps = 20/198 (10%)
Query: 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYA-IASSLKQSQRVIYTTPIKALSNQ 115
L P Q+EAI + N +++L+ + T++GKT++AE A + + L ++ + P+KAL+ +
Sbjct: 25 LYPPQEEAIRAGLLNGENILMVSATASGKTLLAEVAAVNNVLVNDKKSLVAVPLKALAFE 84
Query: 116 KYREFEEQFKDVGL----ITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREVGWV 167
K +F + ++G+ TGD S +I T E L ++L VG +
Sbjct: 85 KLNDFN-TYSELGIRVAASTGDYNSEDKWLGSYDVIITTYEKLDSLLRLKPSWIWNVGQL 143
Query: 168 IFDEIHYMRDKERGYVWEET---LILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV 224
I DEIH++ D ERG + E L +L+ N + + LSATI N + A W++ +
Sbjct: 144 IIDEIHFINDDERGPIIESIVAKLRMLNLNPQIIGLSATIGNPEELANWLN------AKL 197
Query: 225 VYTDYRPTPLQHYLFPNG 242
V +D+RP L+ ++ G
Sbjct: 198 VKSDWRPVSLREGVYHKG 215
>gi|114152816|sp|P51979.3|HFM1_YEAST RecName: Full=ATP-dependent DNA helicase MER3; AltName:
Full=Protein HFM1
Length = 1187
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/252 (27%), Positives = 124/252 (49%), Gaps = 34/252 (13%)
Query: 10 ESKTKACMKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCI 69
+ + K KV + ++ + CL LP ++ + + E + Q EA I
Sbjct: 102 DEEAKKPKKVTIRKSAKKCLSTTILPDS--FRGVFKFTE---------FNKMQSEAFPSI 150
Query: 70 -ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ------RVIYTTPIKALSNQKYREFEE 122
E+N++ ++S+ T +GKTV+ E AI +K++ ++IY P K+L + Y+ +
Sbjct: 151 YESNENCIISSPTGSGKTVLFELAILRLIKETNSDTNNTKIIYIAPTKSLCYEMYKNWFP 210
Query: 123 QFKD--VGLITGDVTI---NPSSSC-LIMTTEILRNMLYRG----SEITREVGWVIFDEI 172
F + VG++T D + + C +I+TT ++L R S + V V+ DEI
Sbjct: 211 SFVNLSVGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEI 270
Query: 173 HYMRDKERGYVWEETLILLS---DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD- 228
H +++K RG E L ++ N+RFV LSAT+PN A W+ + P +++ D
Sbjct: 271 HTIKEK-RGASLEVILTRMNTMCQNIRFVALSATVPNIEDLALWLKTNNELPANILSFDE 329
Query: 229 -YRPTPLQHYLF 239
YR L +++
Sbjct: 330 SYRQVQLTKFVY 341
>gi|21431918|sp|Q09475.2|YP93_CAEEL RecName: Full=Uncharacterized helicase C28H8.3
Length = 1714
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 93/184 (50%), Gaps = 18/184 (9%)
Query: 48 EKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR--VIY 105
+K R F D +Q++ + ++ S L+ A TSAGKT V+ Y I L+ S V+Y
Sbjct: 775 KKDDRVSGFAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVY 834
Query: 106 TTPIKALSNQKYREFEEQFKD---------VGLITGDVTINP-SSSCLIMTTEILRN-ML 154
P KAL NQ +F++ G +T + + N LI E L+ ML
Sbjct: 835 VAPSKALINQVCGSVYARFRNKSMKRGISLFGTLTQEYSQNAMQCQVLITVPECLQELML 894
Query: 155 YRGSEITR---EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFA 211
R + + + +V+FDE+H + E ++WE+ L+L+ F+ LSATI NA++
Sbjct: 895 SRTPAVQKFVSHIKYVVFDEVHSIGASEESHIWEQLLLLI--QCPFLALSATIGNANKLH 952
Query: 212 QWVS 215
+W++
Sbjct: 953 EWLN 956
>gi|206729870|sp|A2PYH4.2|HFM1_HUMAN RecName: Full=Probable ATP-dependent DNA helicase HFM1; AltName:
Full=SEC63 domain-containing protein 1
Length = 1435
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 107/205 (52%), Gaps = 37/205 (18%)
Query: 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVIYTTPIKALSNQKYREFEEQFK 125
+++ ++ A T +GKTVV E AI L + + +++Y PIKAL +Q++ +++E+F
Sbjct: 296 DRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCSQRFDDWKEKFG 355
Query: 126 DVGL----ITGDVTINP----SSSCLIMTT-EILRNML--YRGSEITREVGWVIFDEIHY 174
+GL +TGD ++ + +IMTT E +M +R + + + V + DE+H
Sbjct: 356 PIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHI 415
Query: 175 MRDKERGYVWE-------------ETLILLSDNV--RFVFLSATIPNASQFAQWVSHLHH 219
++D+ RG E +TL S + RFV +SATIPNA A+W+S
Sbjct: 416 VKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMRFVAVSATIPNAEDIAEWLSD-GE 474
Query: 220 QP--CHVVYTDYRPTPLQHYL--FP 240
+P C + +RP LQ + FP
Sbjct: 475 RPAVCLKMDESHRPVKLQKVVLGFP 499
>gi|18202982|sp|Q9HMV6.1|HELS_HALSA RecName: Full=Putative ski2-type helicase
gi|226740605|sp|B0R7Q2.1|HELS_HALS3 RecName: Full=Putative ski2-type helicase
Length = 783
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 31/202 (15%)
Query: 60 PFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ---------RVIYTTPI 109
P Q EA+ + +++ S T++GKT++A+ A+ S++ + +Y P+
Sbjct: 27 PPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPL 86
Query: 110 KALSNQKYREFEEQFKDVGLITGDVTIN--------PSSSCLIMTTEILRNMLYRGSEIT 161
+AL+ +K +EFE F+ GL G T N + ++ T+E + +++ G+
Sbjct: 87 RALAGEKAQEFE-AFERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDSLVRNGAGWI 145
Query: 162 REVGWVIFDEIHYMRDKERGYVWEETLILLSDNV---RFVFLSATIPNASQFAQWVSHLH 218
++ V+ DE+H + D RG E TL L V + V LSAT+ NA + A W+
Sbjct: 146 DDLSCVVADEVHLVDDDHRGPTLEVTLAKLRQQVADLQVVALSATVGNAGELAAWLD--- 202
Query: 219 HQPCHVVYTDYRPTPLQ---HY 237
+V +D+RP L+ HY
Sbjct: 203 ---AELVDSDWRPIELRTGVHY 221
>gi|226740608|sp|A3MSA1.1|HELS_PYRCJ RecName: Full=Putative ski2-type helicase
Length = 708
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 16/195 (8%)
Query: 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116
L P Q EA+ I + +SVL+ T++GK+++AE A + + + +Y P+KAL+ +K
Sbjct: 24 LFPPQVEAVRAGIFDGRSVLLCTATASGKSLLAEVAAVKAGLEGRMALYAVPLKALAYEK 83
Query: 117 YREFE--EQFKDVGLITGDVTINPSS----SCLIMTTEILRNMLYRGSEITREVGWVIFD 170
F VG+ TGD + +++T E L ++L VG V+ D
Sbjct: 84 LVHFSYYRGLVKVGVSTGDFDSDDRRLHEFDVVVVTYEKLDSLLRHRPNWLGLVGVVVVD 143
Query: 171 EIHYMRDKERGYVWEET---LILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT 227
EIHY+ D RG V E L L +F+ LSAT+ NA + A W+ +V +
Sbjct: 144 EIHYLGDPRRGPVLESIVAKLRHLGLKTQFIGLSATVGNAGEVAAWLG------ARLVES 197
Query: 228 DYRPTPLQHYLFPNG 242
+RP PL+ ++ G
Sbjct: 198 SWRPVPLREGVYHGG 212
>gi|41018435|sp|Q58796.1|Y1401_METJA RecName: Full=Probable ATP-dependent helicase MJ1401
Length = 808
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 96/185 (51%), Gaps = 24/185 (12%)
Query: 71 NNQSVLVSAHTSAGKTVVAEYA-IASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129
N +L+ + TS+GKT++ E A I + +K ++ ++ P+ AL+NQKY EF+E+++ +G
Sbjct: 226 NGDDLLIISATSSGKTLIGELAGIKNLIKTGKKFLFLVPLVALANQKYLEFKERYEKLGF 285
Query: 130 ITG------------DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177
DV + + ++ T E + + L R + +++G V+ DEIH +
Sbjct: 286 KVSLRVGLGRIGKKVDVETSLDADIIVGTYEGI-DYLIRTKRL-KDIGTVVIDEIHSLNL 343
Query: 178 KERGYVWE---ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPL 234
+ERG + L L + ++LSATI N + A+ ++ +V + RP PL
Sbjct: 344 EERGARLDGLIGRLRFLFKEAQKIYLSATIGNPKELAKQLN------AKLVLYNGRPVPL 397
Query: 235 QHYLF 239
+ ++
Sbjct: 398 ERHII 402
>gi|296439377|sp|Q8IY21.3|DDX60_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX60; AltName:
Full=DEAD box protein 60
Length = 1712
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 95/185 (51%), Gaps = 19/185 (10%)
Query: 45 QSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR-- 102
+ K+ R F+ D +Q+E + ++ N+S ++ A TS+GKT + Y + LK+S
Sbjct: 751 ERKDPDPRVQDFIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLKESDDGV 810
Query: 103 VIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI--------NPSSSCLIMTT-----EI 149
V+Y P KAL NQ + +F L +G+V + + +C ++ T EI
Sbjct: 811 VVYVAPTKALVNQVAATVQNRFTK-NLPSGEVLCGVFTREYRHDALNCQVLITVPACFEI 869
Query: 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQ 209
L +R + + +++ +VIFDE+H + + +WE L+++ F+ LSATI N
Sbjct: 870 LLLAPHRQNWV-KKIRYVIFDEVHCLGGEIGAEIWEHLLVMI--RCPFLALSATISNPEH 926
Query: 210 FAQWV 214
+W+
Sbjct: 927 LTEWL 931
>gi|171769820|sp|A2RUV5.1|HFM1_XENTR RecName: Full=Probable ATP-dependent DNA helicase HFM1
Length = 1336
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 131/272 (48%), Gaps = 46/272 (16%)
Query: 52 REYPFVLDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVI 104
+E+P+ + Q +A+ + ++++ ++ A T +GKTV+ E AI L Q + +++
Sbjct: 145 KEFPY-FNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLLMQVPMPWTNVKIV 203
Query: 105 YTTPIKALSNQKYREFEEQFKDVGL----ITGDVTINP----SSSCLIMTT-EILRNML- 154
Y PIKAL Q+Y +++ +F VGL +TGD ++ + +IMTT E +M
Sbjct: 204 YMAPIKALCGQRYDDWKAKFGPVGLNCKELTGDTEMDDLFEIQHAHIIMTTPEKWDSMTR 263
Query: 155 -YRGSEITREVGWVIFDEIHYMRDKERGYVWE---------ETLILLSDN------VRFV 198
++ + + + V + DE+H ++++ RG E +L LS++ +RFV
Sbjct: 264 KWKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSRMKTIYSLSHLSEDRKAFIPMRFV 323
Query: 199 FLSATIPNASQFAQWVSHLHHQP--CHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFK 256
+SATIPN A W+S + P C + RP L+ + G ++FK
Sbjct: 324 AVSATIPNVEDIADWLSD-ENSPGVCMKMDESSRPVKLRKVVL-----GFPCSTKQSEFK 377
Query: 257 ---EHNYQVAMNVLANAGDAAKAGDHKGGRKG 285
NY++A N++ D RKG
Sbjct: 378 FDLTLNYKIA-NIIQTYSDGRPTLVFCSTRKG 408
>gi|327478505|sp|Q5H9U9.2|DDX6L_HUMAN RecName: Full=Probable ATP-dependent RNA helicase DDX60-like;
AltName: Full=DEAD box protein 60-like
Length = 1706
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 91/184 (49%), Gaps = 17/184 (9%)
Query: 45 QSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ--R 102
+ K++ R F+ + +Q+E + ++ N+S ++ A TS+GKT + Y + L++S
Sbjct: 731 ERKDRDPRVQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGV 790
Query: 103 VIYTTPIKALSNQKYREFEEQFKDV--------GLITGDVTINPSSSCLIMTT----EIL 150
V+Y P K+L Q E +F G T D N + +++T EIL
Sbjct: 791 VVYVAPAKSLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVLITVPECFEIL 850
Query: 151 RNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQF 210
+R + R + +VIFDE+HY+ + WE L+++ F+ LSATI N +
Sbjct: 851 LLAPHRQKWVER-IRYVIFDEVHYLGREVGAKFWELLLVII--RCPFLVLSATINNPNLL 907
Query: 211 AQWV 214
+W+
Sbjct: 908 TKWL 911
>gi|74997174|sp|Q54XN7.1|Y8827_DICDI RecName: Full=Uncharacterized helicase DDB_G0278827
Length = 1816
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 94/198 (47%), Gaps = 30/198 (15%)
Query: 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR--VIYTTP 108
+R F D +Q E + ++ +S L+ A TS+GKT ++ Y LK+S V++ P
Sbjct: 811 SRVRHFKPDAWQVELLDIVDKRESALICASTSSGKTFISFYCFEQILKESNDGIVVFVCP 870
Query: 109 IKALSNQKYRE----FEEQF----------KDVGLITGDVTINPSSSCLIMTTEILRNML 154
KAL NQ Y E +++ + K VG+ T D +N + +++T +L
Sbjct: 871 TKALVNQMYAEVLGRYDKNYQAINHRPSNHKMVGVFTRDFRLNIETCQILITVPQCLEIL 930
Query: 155 Y---RGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFA 211
+ + + ++IFDE+H + G +WE L+ + F+ LSAT+ N + F
Sbjct: 931 FLSIMNTHFIQRCRYIIFDEVHQIASSVDGAIWERLLVF--NPAPFLALSATLGNLTDFH 988
Query: 212 QW---------VSHLHHQ 220
+ VS +H+Q
Sbjct: 989 NFLKKIDPNRKVSLIHYQ 1006
>gi|74996600|sp|Q54G57.1|HELC1_DICDI RecName: Full=Activating signal cointegrator 1 complex subunit 3
Length = 2195
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 104/209 (49%), Gaps = 31/209 (14%)
Query: 70 ENNQSVLVSAHTSAGKTVVAEYAIASSL-----------KQSQRVIYTTPIKALSNQKYR 118
++N+++L+SA T AGKT +A I + K + ++IY P+KAL+++
Sbjct: 496 KSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVE 555
Query: 119 EFEEQFKDVGLI----TGDVTINP---SSSCLIMTTEILRNMLYRGSE---ITREVGWVI 168
+F K +G++ TGD+ + + +I+TT +++ R S +T+ V +I
Sbjct: 556 KFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLII 615
Query: 169 FDEIHYMRDKERGYVWE-------ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQP 221
DEIH + + ERG V E + + +R V LSAT+PN A+++
Sbjct: 616 IDEIHLLHE-ERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI-RAPASG 673
Query: 222 CHVVYTDYRPTPL-QHYLFPNGGDGIHLI 249
H + YRP PL Q+++ GI ++
Sbjct: 674 THFFDSSYRPVPLTQNFIGVKDNQGIMVM 702
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 25/165 (15%)
Query: 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQF----- 124
N +VL+ + T +GKT+ AE A+ + +V+Y P+KAL ++ +++ +F
Sbjct: 1342 NNNVLLGSPTGSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQEKLG 1401
Query: 125 KDVGLITGDVTINP---SSSCLIMTTE-----ILRNMLYRGSEITREVGWVIFDEIHYMR 176
K + +TGD T N ++ ++ TT I RN ++ V +I DEIH +
Sbjct: 1402 KKLVELTGDYTPNMIALQNADIVTTTPEKWDGISRN--WKNRSYVTSVSLLIIDEIHLIG 1459
Query: 177 DKERGYVWE---ETLILLSD----NVRFVFLSATIPNASQFAQWV 214
+ RG + E + L+S N+R V LS + NA ++W+
Sbjct: 1460 EL-RGPILEVIVSRMKLISKQTGVNIRVVGLSTAMANAIDLSEWM 1503
>gi|74997404|sp|Q55CI8.1|HELCL_DICDI RecName: Full=Activating signal cointegrator 1 complex subunit
3-like
Length = 2237
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 35/210 (16%)
Query: 68 CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ------------RVIYTTPIKALSNQ 115
+ + ++L+SA TS+GKT VA I + +++ +++Y P+K+L +
Sbjct: 563 AFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIVYIAPMKSLVQE 622
Query: 116 KYREFEEQFKDVGLI----TGDVTINP---SSSCLIMTTEILRNMLYRGS---EITREVG 165
F ++ K G++ TGD ++ S + +I+TT +++ R S T+ V
Sbjct: 623 MVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRKSGDRAYTQLVK 682
Query: 166 WVIFDEIHYMRDKERGYVWE----ETLILLSDN---VRFVFLSATIPNASQFAQWVSHLH 218
+I DEIH + D ERG V E TL ++ VR V LSAT+PN A + L
Sbjct: 683 LIIIDEIHLLHD-ERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNYEDVATF---LR 738
Query: 219 HQPCHVVYTD--YRPTPLQHYLFPNGGDGI 246
+P V Y D YRP PL+ GI
Sbjct: 739 VEPDGVFYFDSSYRPIPLEQQYIGISDRGI 768
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 37/239 (15%)
Query: 36 PDLEYQPLA-QSKEKPAREYPF-----VLDPFQKEAILCI-ENNQSVLVSAHTSAGKTVV 88
P L+ QPL Q + P E F + + Q + C+ ++N + +SA T++GKTV
Sbjct: 1370 PLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAPTNSGKTVC 1429
Query: 89 AEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQF---KDVGLITGDVTINPSS--- 140
AE A+ KQ+ +V+Y P++ L++ + +++ +F GL+ D+T + +
Sbjct: 1430 AEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKFGVKSPFGLVVSDLTGDAVTDNK 1489
Query: 141 ----SCLIMTT----EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL- 191
S +I+T +IL ++ + + + +I DE+H + E G E + +
Sbjct: 1490 ILDRSNIIVTNCEKWDILSRK-WKQRKALQSINLLIVDELHLI-GGEYGPTMEIVVSRMR 1547
Query: 192 ------SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTP----LQHYLFP 240
+ +R + LS++I NA W+ Q C+ + + RP P +Q + FP
Sbjct: 1548 YISTQTGNALRVIALSSSIANARDLVLWIGAT-PQTCYNFHPNVRPIPVEYQIQGFEFP 1605
>gi|56405304|sp|O75643.2|U520_HUMAN RecName: Full=U5 small nuclear ribonucleoprotein 200 kDa helicase;
AltName: Full=Activating signal cointegrator 1 complex
subunit 3-like 1; AltName: Full=BRR2 homolog; AltName:
Full=U5 snRNP-specific 200 kDa protein; Short=U5-200KD
Length = 2136
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 43/239 (17%)
Query: 35 PPD--LEYQPLAQSKEKPAR-------EYPFVLDPFQKEAILCIEN-NQSVLVSAHTSAG 84
PP L+ QPL S + + ++PF +P Q + + N + +V V A T +G
Sbjct: 1297 PPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQVFNTVYNSDDNVFVGAPTGSG 1355
Query: 85 KTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEEQFKD-----VGLITG----D 133
KT+ AE+AI L QS R +Y TP++AL+ Q Y ++ E+F+D V L+TG D
Sbjct: 1356 KTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTD 1415
Query: 134 VTINPSSSCLIMTTEI--LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE---ETL 188
+ + + +I T E + + ++ + + + + DE+H + E G V E +
Sbjct: 1416 LKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLI-GGENGPVLEVICSRM 1474
Query: 189 ILLSDN----VRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT-----DYRPTPLQHYL 238
+S +R V LS+++ NA A W+ C T + RP PL+ ++
Sbjct: 1475 RYISSQIERPIRIVALSSSLSNAKDVAHWLG------CSATSTFNFHPNVRPVPLELHI 1527
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 88/197 (44%), Gaps = 29/197 (14%)
Query: 68 CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----------SQRVIYTTPIKALSNQK 116
+E ++++L+ A T AGKT VA + + + ++IY P+++L +
Sbjct: 492 ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEM 551
Query: 117 YREFEEQFKDVGLITGDVTIN--------PSSSCLIMTTEILRNMLYRGSE--ITREVGW 166
F ++ G+ ++T + ++ ++ T E + +G E T+ V
Sbjct: 552 VGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRL 611
Query: 167 VIFDEIHYMRDKERGYVWE-------ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHH 219
+I DEIH + D +RG V E + + ++VR + LSAT+PN A ++
Sbjct: 612 IILDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPA 670
Query: 220 QPCHVVYTDYRPTPLQH 236
+ +RP PL+
Sbjct: 671 KGLFYFDNSFRPVPLEQ 687
>gi|347595711|sp|P53327.2|SLH1_YEAST RecName: Full=Antiviral helicase SLH1; AltName: Full=SKI2-like
helicase 1
Length = 1967
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 118/251 (47%), Gaps = 45/251 (17%)
Query: 23 ETLEACLHEV-ALPPDLEYQPLAQSKEKPAREYPF-VLDPFQKEAILCIEN-NQSVLVSA 79
ETL+ L ++ LP PL +S YPF +P Q + N N++ V +
Sbjct: 1109 ETLQTKLLKLRPLPTSALQNPLIESI------YPFKYFNPMQTMTFYTLYNTNENAFVGS 1162
Query: 80 HTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVG-----LITG 132
T +GKT+VAE AI + K ++++Y P+KAL ++ ++ ++ V +TG
Sbjct: 1163 PTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRERVDDWRKKITPVTGDKVVELTG 1222
Query: 133 DVTINP----SSSCLIMTTE----ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVW 184
D +P ++ +I T E I RN ++ + ++V +I DEIH + +RG +
Sbjct: 1223 DSLPDPKDVHDATIVITTPEKFDGISRN--WQTRKFVQDVSLIIMDEIHLLA-SDRGPIL 1279
Query: 185 EETLILLS-------DNVRFVFLSATIPNASQFAQWVS----HLHHQPCHVVYTDYRPTP 233
E + ++ VR + +S + NA A W+ L++ P V RP P
Sbjct: 1280 EMIVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSV-----RPVP 1334
Query: 234 LQHYL--FPNG 242
L+ Y+ FP+
Sbjct: 1335 LKMYIDGFPDN 1345
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 36/204 (17%)
Query: 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ---------------RVIYTTPIKALSN 114
+ N+++L+ A T AGKT +A I +++KQ +VIY P+KAL+
Sbjct: 301 KTNENMLICAPTGAGKTDIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAA 360
Query: 115 QKYREFEEQFKDVGL----ITGDVTINPS---SSCLIMTTEILRNMLYRGS----EITRE 163
+ +F ++ + +TGD+ + + ++ +I+TT +++ R + ++ +
Sbjct: 361 EIVDKFSKKLAPFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSK 420
Query: 164 VGWVIFDEIHYMRDKERGYVWEETLILLS--------DNVRFVFLSATIPNASQFAQWVS 215
V +I DE+H + + +RG V ETL+ + +R + LSAT+PN A ++
Sbjct: 421 VKLLIIDEVHLLHE-DRGSVI-ETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADFLG 478
Query: 216 HLHHQPCHVVYTDYRPTPLQHYLF 239
+RP PL+ L
Sbjct: 479 VNRQIGMFYFDQSFRPKPLEQQLL 502
>gi|325511332|sp|O75417.2|DPOLQ_HUMAN RecName: Full=DNA polymerase theta; AltName: Full=DNA polymerase
eta
Length = 2590
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 38/205 (18%)
Query: 61 FQKEAILC--IENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKY 117
+Q E +L + ++++ SA TSAGKT+VAE I L+ ++ ++ P +++ +K
Sbjct: 95 WQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKK 154
Query: 118 REFEEQFKDVGL-ITGDV-TINPS--------SSCLIMTTEILRNMLYRGSEITREVGWV 167
+ F++VG+ + G + + +PS + C I L N L +++ +G V
Sbjct: 155 YYLQSLFQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDL-LGMV 213
Query: 168 IFDEIHYMRDKERGYVWEETLI------------------LLSDNVRFVFLSATIPNASQ 209
+ DE+H + D RGY+ E L LS+ V+ V +SAT+PN
Sbjct: 214 VVDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLEL 273
Query: 210 FAQWVSHLHHQPCHVVYTDYRPTPL 234
A W++ + +TD+RP PL
Sbjct: 274 VASWLN------AELYHTDFRPVPL 292
Database: swissprot
Posted date: Jul 29, 2013 6:00 PM
Number of letters in database: 169,969,125
Number of sequences in database: 455,621
Lambda K H
0.320 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,508,242
Number of Sequences: 455621
Number of extensions: 5734416
Number of successful extensions: 16804
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 16537
Number of HSP's gapped (non-prelim): 257
length of query: 391
length of database: 169,969,125
effective HSP length: 119
effective length of query: 272
effective length of database: 115,750,226
effective search space: 31484061472
effective search space used: 31484061472
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)