Query psy6275
Match_columns 391
No_of_seqs 242 out of 2130
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 22:13:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0948|consensus 100.0 5.1E-53 1.1E-57 406.1 29.8 366 17-382 87-458 (1041)
2 KOG0330|consensus 100.0 1.3E-43 2.9E-48 319.5 15.7 287 33-380 58-371 (476)
3 KOG0947|consensus 100.0 1.3E-41 2.7E-46 334.9 26.0 333 47-381 287-641 (1248)
4 COG4581 Superfamily II RNA hel 100.0 8.4E-41 1.8E-45 340.6 30.7 335 47-384 109-458 (1041)
5 KOG0331|consensus 100.0 2.9E-42 6.4E-47 329.5 16.3 285 37-380 92-412 (519)
6 COG0513 SrmB Superfamily II DN 100.0 1.2E-40 2.6E-45 330.2 22.1 284 36-379 29-343 (513)
7 PRK11776 ATP-dependent RNA hel 100.0 7.5E-40 1.6E-44 323.5 23.2 280 36-377 4-310 (460)
8 PRK04837 ATP-dependent RNA hel 100.0 3.2E-39 6.9E-44 315.7 23.6 281 36-378 8-324 (423)
9 PRK10590 ATP-dependent RNA hel 100.0 4.8E-39 1E-43 316.7 22.8 279 37-377 2-313 (456)
10 PTZ00110 helicase; Provisional 100.0 4.2E-39 9.2E-44 322.0 22.4 280 37-377 131-445 (545)
11 PRK11634 ATP-dependent RNA hel 100.0 8.9E-39 1.9E-43 322.6 23.4 281 36-378 6-314 (629)
12 PRK04537 ATP-dependent RNA hel 100.0 7.3E-39 1.6E-43 321.4 22.6 279 37-377 10-325 (572)
13 KOG0343|consensus 100.0 1.8E-39 4E-44 303.9 16.0 283 35-379 68-385 (758)
14 KOG0338|consensus 100.0 1.4E-39 3E-44 302.3 13.9 282 36-376 181-493 (691)
15 PRK11192 ATP-dependent RNA hel 100.0 2.8E-38 6E-43 310.3 23.7 281 37-378 2-314 (434)
16 KOG0328|consensus 100.0 6.8E-40 1.5E-44 284.1 10.1 291 30-380 21-337 (400)
17 PLN00206 DEAD-box ATP-dependen 100.0 1.3E-37 2.8E-42 310.4 24.3 279 37-378 122-437 (518)
18 PRK02362 ski2-like helicase; P 100.0 3.1E-37 6.8E-42 319.9 27.0 303 38-386 3-319 (737)
19 KOG0342|consensus 100.0 7.5E-38 1.6E-42 290.2 17.4 283 37-380 83-401 (543)
20 PRK01297 ATP-dependent RNA hel 100.0 4.4E-37 9.6E-42 304.6 23.3 280 36-377 87-403 (475)
21 KOG0345|consensus 100.0 2E-37 4.2E-42 285.7 18.2 278 42-380 12-328 (567)
22 KOG0326|consensus 100.0 1.2E-38 2.6E-43 280.6 8.2 282 37-379 86-392 (459)
23 KOG0333|consensus 100.0 2.4E-37 5.3E-42 288.3 16.6 284 36-381 245-589 (673)
24 KOG0346|consensus 100.0 3E-37 6.6E-42 282.2 15.2 292 36-378 19-372 (569)
25 KOG0335|consensus 100.0 5.2E-37 1.1E-41 288.9 17.1 281 37-378 75-406 (482)
26 PTZ00424 helicase 45; Provisio 100.0 3.3E-36 7.2E-41 293.1 21.8 282 35-377 27-335 (401)
27 PRK00254 ski2-like helicase; P 100.0 9.5E-36 2.1E-40 308.1 25.2 297 38-386 3-311 (720)
28 COG1204 Superfamily II helicas 100.0 9.5E-36 2.1E-40 303.4 20.4 300 43-386 16-330 (766)
29 KOG0340|consensus 100.0 3.9E-36 8.4E-41 268.4 13.4 287 36-380 7-325 (442)
30 PRK01172 ski2-like helicase; P 100.0 1.2E-34 2.6E-39 298.5 24.3 282 38-376 3-328 (674)
31 TIGR03817 DECH_helic helicase/ 100.0 2.1E-34 4.4E-39 296.3 25.2 288 42-377 20-347 (742)
32 KOG0952|consensus 100.0 4.9E-35 1.1E-39 291.6 16.9 278 54-387 106-413 (1230)
33 KOG4284|consensus 100.0 1.5E-35 3.2E-40 282.0 9.3 295 34-381 23-344 (980)
34 KOG0332|consensus 100.0 2.5E-34 5.3E-39 258.3 11.9 286 36-380 90-401 (477)
35 KOG0348|consensus 100.0 5.2E-34 1.1E-38 266.6 13.9 187 36-225 136-360 (708)
36 KOG0336|consensus 100.0 2.4E-34 5.3E-39 261.0 11.3 274 41-377 225-533 (629)
37 COG1202 Superfamily II helicas 100.0 4.4E-33 9.6E-38 262.5 19.6 279 37-377 195-508 (830)
38 KOG0327|consensus 100.0 2E-33 4.3E-38 254.3 11.2 280 36-379 26-333 (397)
39 KOG0339|consensus 100.0 7.8E-33 1.7E-37 257.2 15.3 280 37-377 224-536 (731)
40 TIGR00614 recQ_fam ATP-depende 100.0 1E-31 2.2E-36 265.5 23.8 265 52-383 5-306 (470)
41 PRK13767 ATP-dependent helicas 100.0 1.1E-31 2.3E-36 281.4 24.2 282 45-378 20-359 (876)
42 KOG0337|consensus 100.0 9.1E-33 2E-37 251.7 10.0 282 35-377 20-329 (529)
43 KOG0334|consensus 100.0 5.1E-32 1.1E-36 272.0 14.0 280 36-377 365-681 (997)
44 KOG0347|consensus 100.0 1.1E-32 2.3E-37 258.6 8.4 279 37-376 182-530 (731)
45 COG1201 Lhr Lhr-like helicases 100.0 5.8E-31 1.3E-35 265.4 20.7 284 42-380 7-325 (814)
46 PRK11057 ATP-dependent DNA hel 100.0 3.4E-30 7.5E-35 261.2 25.4 262 54-383 21-316 (607)
47 PLN03137 ATP-dependent DNA hel 100.0 1.5E-30 3.2E-35 267.7 22.8 265 53-383 455-760 (1195)
48 TIGR01389 recQ ATP-dependent D 100.0 3.1E-30 6.8E-35 262.0 24.0 264 53-384 8-305 (591)
49 KOG0951|consensus 100.0 1.3E-30 2.9E-35 263.1 19.2 287 55-387 306-624 (1674)
50 KOG0341|consensus 100.0 1.8E-32 3.8E-37 247.4 3.7 287 37-384 171-502 (610)
51 PRK09401 reverse gyrase; Revie 100.0 2E-29 4.3E-34 268.0 23.5 264 53-382 76-410 (1176)
52 KOG0350|consensus 100.0 4.1E-30 8.9E-35 238.9 12.8 265 50-376 151-500 (620)
53 TIGR00580 mfd transcription-re 100.0 1.4E-28 3.1E-33 255.8 23.3 260 47-379 441-732 (926)
54 PRK10689 transcription-repair 100.0 2.9E-28 6.3E-33 258.7 24.1 271 36-380 579-882 (1147)
55 PRK14701 reverse gyrase; Provi 100.0 1.9E-28 4.1E-33 265.8 21.6 271 49-382 70-412 (1638)
56 KOG0344|consensus 100.0 3.8E-29 8.3E-34 237.5 12.7 279 42-380 142-459 (593)
57 PRK09751 putative ATP-dependen 100.0 6.4E-28 1.4E-32 257.6 23.1 261 77-378 1-346 (1490)
58 TIGR02621 cas3_GSU0051 CRISPR- 100.0 8.4E-28 1.8E-32 243.9 21.0 273 54-377 12-354 (844)
59 PRK10917 ATP-dependent DNA hel 100.0 3.9E-27 8.4E-32 241.5 23.9 259 49-380 253-552 (681)
60 TIGR01054 rgy reverse gyrase. 100.0 1.6E-27 3.5E-32 253.8 21.4 258 53-377 74-397 (1171)
61 KOG0329|consensus 100.0 1E-28 2.2E-33 211.8 6.6 202 36-240 42-264 (387)
62 PHA02558 uvsW UvsW helicase; P 99.9 3.1E-26 6.7E-31 227.8 24.2 279 56-378 113-414 (501)
63 TIGR00643 recG ATP-dependent D 99.9 2.1E-26 4.5E-31 234.6 21.7 259 48-380 226-529 (630)
64 cd00268 DEADc DEAD-box helicas 99.9 6.9E-27 1.5E-31 206.2 15.6 184 38-223 1-201 (203)
65 TIGR01970 DEAH_box_HrpB ATP-de 99.9 1.5E-25 3.3E-30 231.0 24.1 256 60-377 5-280 (819)
66 PHA02653 RNA helicase NPH-II; 99.9 1.4E-25 2.9E-30 226.3 22.4 255 60-377 167-464 (675)
67 PRK11664 ATP-dependent RNA hel 99.9 1.4E-25 3E-30 231.7 23.1 256 60-377 8-283 (812)
68 TIGR03158 cas3_cyano CRISPR-as 99.9 4.9E-25 1.1E-29 210.0 23.9 144 61-207 1-194 (357)
69 COG1205 Distinct helicase fami 99.9 2.7E-25 5.9E-30 230.0 23.0 277 48-376 60-381 (851)
70 TIGR01587 cas3_core CRISPR-ass 99.9 1.7E-25 3.6E-30 214.6 18.5 139 74-215 1-174 (358)
71 COG0514 RecQ Superfamily II DN 99.9 1.7E-25 3.8E-30 218.4 17.5 263 53-383 12-310 (590)
72 PF00270 DEAD: DEAD/DEAH box h 99.9 1.3E-24 2.7E-29 185.9 15.6 147 59-205 1-163 (169)
73 COG1061 SSL2 DNA or RNA helica 99.9 2.1E-22 4.5E-27 196.8 22.9 296 52-380 31-353 (442)
74 PRK13766 Hef nuclease; Provisi 99.9 3.3E-22 7.1E-27 209.9 25.9 161 54-215 12-184 (773)
75 KOG0349|consensus 99.9 3E-24 6.6E-29 196.8 7.3 244 101-376 287-575 (725)
76 COG1111 MPH1 ERCC4-like helica 99.9 3.8E-22 8.3E-27 187.4 21.4 169 55-227 13-196 (542)
77 TIGR00603 rad25 DNA repair hel 99.9 4.9E-22 1.1E-26 200.1 23.7 280 55-380 253-563 (732)
78 COG4098 comFA Superfamily II D 99.9 3.4E-21 7.3E-26 172.5 21.0 261 53-378 93-374 (441)
79 KOG0950|consensus 99.9 1.3E-21 2.8E-26 195.4 17.7 303 52-387 217-539 (1008)
80 PRK05580 primosome assembly pr 99.9 7.6E-21 1.6E-25 194.6 23.1 145 54-205 141-305 (679)
81 KOG0354|consensus 99.9 5.3E-21 1.1E-25 189.4 20.1 164 51-215 56-233 (746)
82 PRK11131 ATP-dependent RNA hel 99.9 6E-21 1.3E-25 201.3 21.6 255 58-377 75-355 (1294)
83 PRK09694 helicase Cas3; Provis 99.9 2E-20 4.4E-25 193.4 22.4 152 55-207 284-483 (878)
84 PRK12898 secA preprotein trans 99.9 4.2E-21 9.1E-26 191.2 16.8 120 54-175 100-254 (656)
85 COG1200 RecG RecG-like helicas 99.9 8.3E-21 1.8E-25 185.5 18.0 257 48-380 253-554 (677)
86 TIGR03714 secA2 accessory Sec 99.8 3.7E-20 8E-25 186.7 18.7 119 55-175 68-207 (762)
87 PRK09200 preprotein translocas 99.8 3E-20 6.6E-25 188.9 17.7 121 54-176 75-212 (790)
88 TIGR00963 secA preprotein tran 99.8 2.4E-20 5.3E-25 186.9 16.1 121 54-176 53-189 (745)
89 KOG0351|consensus 99.8 2.9E-20 6.3E-25 191.8 15.9 252 50-355 256-542 (941)
90 TIGR01967 DEAH_box_HrpA ATP-de 99.8 1.4E-19 3E-24 191.7 21.1 259 60-377 70-348 (1283)
91 smart00487 DEXDc DEAD-like hel 99.8 6.4E-19 1.4E-23 153.7 18.4 151 57-207 8-173 (201)
92 KOG0352|consensus 99.8 4.1E-19 8.8E-24 163.1 17.0 262 54-355 15-312 (641)
93 KOG0949|consensus 99.8 3.6E-19 7.9E-24 177.4 15.4 160 54-215 508-682 (1330)
94 TIGR00595 priA primosomal prot 99.8 1.5E-18 3.2E-23 171.9 19.3 123 76-205 1-140 (505)
95 PRK13104 secA preprotein trans 99.8 5.8E-19 1.3E-23 179.4 16.5 121 54-176 79-215 (896)
96 PRK11448 hsdR type I restricti 99.8 8.1E-18 1.8E-22 178.8 24.9 149 56-206 412-596 (1123)
97 COG1110 Reverse gyrase [DNA re 99.8 2E-18 4.3E-23 173.7 18.5 252 54-377 79-405 (1187)
98 KOG0353|consensus 99.8 7E-19 1.5E-23 159.4 13.8 229 55-335 91-345 (695)
99 COG1197 Mfd Transcription-repa 99.8 2.4E-18 5.2E-23 177.2 18.6 277 35-385 572-881 (1139)
100 PRK12904 preprotein translocas 99.8 3E-18 6.5E-23 174.1 17.3 120 54-176 78-214 (830)
101 COG4096 HsdR Type I site-speci 99.8 9.2E-18 2E-22 166.5 17.3 301 57-378 165-500 (875)
102 KOG0951|consensus 99.8 1.5E-17 3.3E-22 169.5 15.8 260 58-384 1144-1419(1674)
103 KOG0952|consensus 99.8 2.8E-19 6.1E-24 179.7 3.3 277 58-386 928-1227(1230)
104 KOG0922|consensus 99.7 1.2E-16 2.7E-21 155.0 20.3 217 58-330 52-281 (674)
105 COG1643 HrpA HrpA-like helicas 99.7 1.5E-16 3.2E-21 162.7 21.2 217 58-329 51-281 (845)
106 PF04851 ResIII: Type III rest 99.7 1.6E-16 3.5E-21 137.3 15.8 142 56-205 2-183 (184)
107 TIGR01407 dinG_rel DnaQ family 99.7 1.1E-15 2.3E-20 161.3 22.0 73 46-118 234-310 (850)
108 PRK12899 secA preprotein trans 99.7 1E-16 2.2E-21 163.1 11.8 124 53-176 84-228 (970)
109 cd00046 DEXDc DEAD-like helica 99.7 6.2E-16 1.3E-20 127.0 13.9 132 73-204 1-144 (144)
110 COG1203 CRISPR-associated heli 99.7 9.1E-16 2E-20 158.8 14.7 282 58-391 196-533 (733)
111 PRK04914 ATP-dependent helicas 99.7 4.5E-15 9.7E-20 155.0 19.1 151 55-206 150-317 (956)
112 PRK13107 preprotein translocas 99.6 9.5E-16 2E-20 155.9 12.3 121 54-176 79-215 (908)
113 COG1198 PriA Primosomal protei 99.6 2.3E-14 5.1E-19 144.7 21.5 142 57-205 198-360 (730)
114 KOG0926|consensus 99.6 1.9E-14 4E-19 141.6 16.0 214 65-330 264-504 (1172)
115 PF07652 Flavi_DEAD: Flaviviru 99.6 7.5E-15 1.6E-19 118.0 10.2 134 71-207 3-139 (148)
116 KOG0920|consensus 99.6 1.7E-13 3.6E-18 140.2 21.3 252 58-330 174-436 (924)
117 TIGR00348 hsdR type I site-spe 99.6 1.7E-13 3.6E-18 140.7 21.4 144 58-206 239-404 (667)
118 KOG1123|consensus 99.6 1.2E-14 2.7E-19 136.3 9.3 268 37-347 283-586 (776)
119 KOG0923|consensus 99.5 1.2E-13 2.5E-18 133.7 15.2 216 58-329 266-495 (902)
120 PRK12906 secA preprotein trans 99.5 9E-14 2E-18 141.2 13.9 120 54-175 77-212 (796)
121 KOG0924|consensus 99.5 1.8E-13 3.8E-18 132.8 14.7 172 59-242 358-542 (1042)
122 KOG0925|consensus 99.4 1.4E-12 3.1E-17 122.2 13.6 236 37-329 26-275 (699)
123 PLN03142 Probable chromatin-re 99.3 1.4E-10 2.9E-15 122.3 22.8 152 57-214 169-341 (1033)
124 PRK12326 preprotein translocas 99.3 8.3E-11 1.8E-15 117.6 16.4 120 54-175 75-210 (764)
125 PRK13103 secA preprotein trans 99.3 9.4E-11 2E-15 120.0 14.5 120 54-175 79-214 (913)
126 PRK07246 bifunctional ATP-depe 99.2 6.7E-11 1.5E-15 123.8 13.5 72 50-122 238-314 (820)
127 PF00176 SNF2_N: SNF2 family N 99.2 4.2E-10 9.1E-15 105.0 15.8 151 61-215 1-185 (299)
128 TIGR03117 cas_csf4 CRISPR-asso 99.2 1.6E-10 3.4E-15 116.2 13.5 58 67-124 11-70 (636)
129 KOG4150|consensus 99.2 1.3E-10 2.9E-15 111.1 10.9 274 58-382 287-612 (1034)
130 COG1199 DinG Rad3-related DNA 99.2 1.3E-09 2.8E-14 112.9 18.9 70 54-123 12-86 (654)
131 PRK08074 bifunctional ATP-depe 99.2 2.9E-10 6.4E-15 121.0 13.7 66 54-119 254-324 (928)
132 COG0556 UvrB Helicase subunit 99.1 3.7E-09 7.9E-14 101.0 18.1 68 55-125 10-82 (663)
133 CHL00122 secA preprotein trans 99.1 2.5E-09 5.4E-14 109.2 14.4 120 54-175 73-208 (870)
134 PRK14873 primosome assembly pr 99.0 8.1E-09 1.8E-13 105.2 15.2 123 76-205 164-304 (665)
135 PRK12902 secA preprotein trans 99.0 7.4E-09 1.6E-13 105.7 14.7 120 54-175 82-217 (939)
136 COG4889 Predicted helicase [Ge 99.0 1.4E-09 2.9E-14 108.9 9.0 137 36-175 140-316 (1518)
137 TIGR02562 cas3_yersinia CRISPR 99.0 6.5E-09 1.4E-13 107.8 13.1 149 58-207 409-637 (1110)
138 TIGR00631 uvrb excinuclease AB 98.9 2E-08 4.3E-13 102.6 15.5 69 54-125 6-79 (655)
139 PRK11747 dinG ATP-dependent DN 98.9 1.1E-08 2.3E-13 105.9 12.5 65 55-119 23-97 (697)
140 PRK12903 secA preprotein trans 98.9 3.3E-08 7.1E-13 100.8 15.2 121 54-176 75-211 (925)
141 KOG0385|consensus 98.9 3.8E-08 8.1E-13 97.7 14.3 146 55-206 165-329 (971)
142 KOG0387|consensus 98.8 4E-07 8.7E-12 90.9 18.7 144 58-207 206-378 (923)
143 PF02399 Herpes_ori_bp: Origin 98.8 5.5E-07 1.2E-11 91.4 18.9 155 72-231 49-216 (824)
144 KOG1000|consensus 98.7 1.7E-07 3.7E-12 88.9 13.4 143 58-205 199-349 (689)
145 PRK12900 secA preprotein trans 98.7 1.7E-07 3.7E-12 96.9 13.1 118 56-175 137-270 (1025)
146 PRK05298 excinuclease ABC subu 98.7 8.3E-07 1.8E-11 91.3 17.7 70 53-125 8-82 (652)
147 PF13604 AAA_30: AAA domain; P 98.7 1.7E-07 3.7E-12 81.8 10.8 121 58-202 2-129 (196)
148 smart00488 DEXDc2 DEAD-like he 98.7 9.4E-08 2E-12 88.5 9.0 71 54-124 5-85 (289)
149 smart00489 DEXDc3 DEAD-like he 98.7 9.4E-08 2E-12 88.5 9.0 71 54-124 5-85 (289)
150 KOG0953|consensus 98.6 1.6E-07 3.4E-12 90.3 8.5 109 71-191 190-303 (700)
151 PF07517 SecA_DEAD: SecA DEAD- 98.6 4.5E-07 9.8E-12 82.1 10.6 125 53-179 73-214 (266)
152 KOG1803|consensus 98.5 5.1E-07 1.1E-11 88.0 10.6 67 55-121 183-250 (649)
153 PRK15483 type III restriction- 98.5 1.3E-06 2.9E-11 91.0 12.9 130 73-206 60-240 (986)
154 KOG0390|consensus 98.5 3.3E-06 7.1E-11 86.0 14.3 145 57-207 238-417 (776)
155 TIGR01447 recD exodeoxyribonuc 98.4 4.1E-06 8.8E-11 84.8 13.1 138 59-203 147-295 (586)
156 KOG0389|consensus 98.4 1.7E-06 3.7E-11 86.5 9.8 157 53-214 395-574 (941)
157 PRK10875 recD exonuclease V su 98.4 4.2E-06 9.1E-11 84.9 12.5 139 58-203 153-301 (615)
158 TIGR01448 recD_rel helicase, p 98.4 4.3E-06 9.4E-11 86.9 12.7 127 52-203 318-452 (720)
159 PF02562 PhoH: PhoH-like prote 98.3 1.8E-06 4E-11 75.0 8.0 124 58-203 5-155 (205)
160 PF09848 DUF2075: Uncharacteri 98.3 3.6E-06 7.8E-11 80.5 10.1 93 74-177 3-97 (352)
161 PF13245 AAA_19: Part of AAA d 98.3 2.9E-06 6.3E-11 61.7 7.2 56 65-120 2-62 (76)
162 KOG1002|consensus 98.3 8.8E-06 1.9E-10 77.5 11.9 148 55-207 182-357 (791)
163 PF13872 AAA_34: P-loop contai 98.3 1.8E-05 4E-10 72.1 13.3 148 58-206 38-222 (303)
164 PRK06835 DNA replication prote 98.2 1.8E-05 3.9E-10 74.4 12.8 60 57-117 160-227 (329)
165 PRK10536 hypothetical protein; 98.2 2.2E-05 4.7E-10 70.4 12.4 136 54-200 55-209 (262)
166 PF13086 AAA_11: AAA domain; P 98.2 5E-06 1.1E-10 74.4 7.8 65 58-122 2-75 (236)
167 COG0610 Type I site-specific r 98.2 1.3E-05 2.8E-10 85.6 12.0 131 73-207 274-416 (962)
168 TIGR02768 TraA_Ti Ti-type conj 98.2 3.2E-05 6.9E-10 80.8 14.3 124 54-201 349-474 (744)
169 KOG0384|consensus 98.2 1.2E-05 2.6E-10 84.1 10.8 153 55-215 368-548 (1373)
170 KOG4439|consensus 98.1 8.3E-06 1.8E-10 80.7 8.8 157 55-215 323-514 (901)
171 KOG1802|consensus 98.1 9.7E-06 2.1E-10 79.8 9.2 80 46-125 398-479 (935)
172 PRK13889 conjugal transfer rel 98.1 5.3E-05 1.1E-09 80.5 14.1 127 52-203 341-470 (988)
173 PRK08181 transposase; Validate 98.0 0.00014 2.9E-09 66.5 14.0 126 49-204 75-209 (269)
174 PRK06526 transposase; Provisio 98.0 3.3E-05 7.1E-10 70.1 9.8 106 69-204 95-201 (254)
175 KOG0392|consensus 98.0 5.4E-05 1.2E-09 79.3 11.5 153 57-215 975-1151(1549)
176 PF13401 AAA_22: AAA domain; P 98.0 2.8E-05 6E-10 63.0 7.4 117 71-204 3-125 (131)
177 TIGR00604 rad3 DNA repair heli 97.9 2.6E-05 5.6E-10 81.4 8.7 71 53-123 5-83 (705)
178 PF12340 DUF3638: Protein of u 97.9 0.00011 2.4E-09 64.7 11.0 123 53-177 19-186 (229)
179 PRK06921 hypothetical protein; 97.9 4.6E-05 1E-09 69.7 9.1 45 71-116 116-161 (266)
180 PRK04296 thymidine kinase; Pro 97.9 2.4E-05 5.2E-10 67.9 6.2 86 72-175 2-90 (190)
181 PF06862 DUF1253: Protein of u 97.9 0.0011 2.4E-08 64.3 17.7 107 100-207 37-228 (442)
182 KOG0921|consensus 97.9 7.5E-05 1.6E-09 76.0 9.5 147 64-216 385-546 (1282)
183 PRK13826 Dtr system oriT relax 97.8 0.00031 6.7E-09 75.3 14.6 126 54-203 378-505 (1102)
184 TIGR00376 DNA helicase, putati 97.8 7.6E-05 1.7E-09 76.6 9.0 67 57-123 157-224 (637)
185 cd00009 AAA The AAA+ (ATPases 97.8 0.00024 5.2E-09 58.0 10.4 38 72-109 19-56 (151)
186 KOG1132|consensus 97.8 0.00016 3.4E-09 73.8 10.3 72 53-124 17-134 (945)
187 COG1484 DnaC DNA replication p 97.8 0.00023 5.1E-09 64.6 10.5 99 49-176 74-180 (254)
188 KOG0391|consensus 97.7 0.0001 2.2E-09 76.9 8.6 145 57-207 615-778 (1958)
189 PRK07952 DNA replication prote 97.7 0.0013 2.7E-08 59.3 14.1 126 59-214 78-213 (244)
190 PRK12377 putative replication 97.7 0.00084 1.8E-08 60.6 13.0 75 72-175 101-175 (248)
191 PF00580 UvrD-helicase: UvrD/R 97.7 0.00011 2.4E-09 68.8 7.4 114 58-173 1-125 (315)
192 smart00382 AAA ATPases associa 97.7 0.00013 2.8E-09 59.1 6.8 42 72-113 2-43 (148)
193 PF01695 IstB_IS21: IstB-like 97.7 0.00012 2.5E-09 62.9 6.6 46 70-116 45-90 (178)
194 KOG0386|consensus 97.6 7.3E-05 1.6E-09 77.0 5.8 145 55-206 392-556 (1157)
195 PRK12723 flagellar biosynthesi 97.6 0.0017 3.7E-08 62.4 14.4 124 72-215 174-307 (388)
196 PRK08727 hypothetical protein; 97.6 0.0019 4.1E-08 58.0 13.1 35 73-107 42-76 (233)
197 PRK08084 DNA replication initi 97.5 0.0013 2.9E-08 59.1 11.6 37 72-108 45-81 (235)
198 PRK05642 DNA replication initi 97.5 0.00073 1.6E-08 60.7 9.7 94 73-205 46-140 (234)
199 KOG1805|consensus 97.5 0.00042 9.1E-09 71.4 8.8 117 57-177 669-810 (1100)
200 PF00448 SRP54: SRP54-type pro 97.5 0.0017 3.7E-08 56.6 11.5 122 74-207 3-128 (196)
201 PRK08116 hypothetical protein; 97.5 0.0012 2.6E-08 60.6 10.9 45 74-119 116-160 (268)
202 KOG2340|consensus 97.5 0.00051 1.1E-08 66.4 8.5 125 57-181 216-433 (698)
203 PRK08903 DnaA regulatory inact 97.5 0.0022 4.7E-08 57.3 12.2 36 72-107 42-77 (227)
204 PRK11889 flhF flagellar biosyn 97.4 0.0044 9.6E-08 59.1 14.1 116 73-206 242-364 (436)
205 PRK11823 DNA repair protein Ra 97.4 0.0018 3.8E-08 63.9 11.9 151 2-177 7-170 (446)
206 PRK05703 flhF flagellar biosyn 97.4 0.0047 1E-07 60.4 14.5 118 72-206 221-344 (424)
207 PRK06893 DNA replication initi 97.3 0.0011 2.4E-08 59.4 9.0 94 73-205 40-135 (229)
208 TIGR02760 TraI_TIGR conjugativ 97.3 0.0022 4.7E-08 73.7 13.1 137 55-203 427-566 (1960)
209 KOG0388|consensus 97.3 0.0011 2.3E-08 66.3 8.9 143 56-207 566-736 (1185)
210 COG1875 NYN ribonuclease and A 97.3 0.0021 4.6E-08 59.8 10.3 136 51-201 221-385 (436)
211 COG3587 Restriction endonuclea 97.3 0.0011 2.3E-08 67.8 8.7 131 73-207 75-245 (985)
212 PRK09183 transposase/IS protei 97.3 0.0052 1.1E-07 56.1 12.6 47 69-116 99-145 (259)
213 PF05970 PIF1: PIF1-like helic 97.3 0.00047 1E-08 66.2 6.0 107 58-177 2-116 (364)
214 COG1419 FlhF Flagellar GTP-bin 97.3 0.0093 2E-07 56.8 14.2 124 72-215 203-333 (407)
215 TIGR03420 DnaA_homol_Hda DnaA 97.2 0.0032 7E-08 56.1 10.9 36 71-106 37-72 (226)
216 PHA02533 17 large terminase pr 97.2 0.0018 4E-08 64.9 10.0 141 54-203 56-209 (534)
217 PRK14974 cell division protein 97.2 0.01 2.2E-07 56.1 14.1 122 73-207 141-267 (336)
218 PF00308 Bac_DnaA: Bacterial d 97.2 0.0026 5.6E-08 56.5 9.2 103 74-207 36-143 (219)
219 cd01121 Sms Sms (bacterial rad 97.2 0.0022 4.7E-08 61.5 9.2 87 72-176 82-171 (372)
220 PRK14722 flhF flagellar biosyn 97.1 0.0034 7.4E-08 59.9 10.3 117 71-207 136-260 (374)
221 PRK00149 dnaA chromosomal repl 97.1 0.003 6.6E-08 62.5 10.4 75 73-177 149-225 (450)
222 cd01124 KaiC KaiC is a circadi 97.1 0.0011 2.4E-08 57.1 6.5 49 75-124 2-50 (187)
223 PRK08939 primosomal protein Dn 97.1 0.0035 7.7E-08 58.5 9.7 111 72-214 156-269 (306)
224 KOG0989|consensus 97.1 0.0011 2.4E-08 60.3 5.8 45 160-205 126-170 (346)
225 PRK12402 replication factor C 97.0 0.0044 9.6E-08 58.8 10.2 28 69-96 31-60 (337)
226 cd01120 RecA-like_NTPases RecA 97.0 0.0024 5.2E-08 53.3 7.3 38 75-112 2-39 (165)
227 PRK12726 flagellar biosynthesi 97.0 0.012 2.6E-07 56.0 12.4 126 71-214 205-336 (407)
228 PRK14712 conjugal transfer nic 97.0 0.006 1.3E-07 67.9 11.9 124 55-203 833-967 (1623)
229 PRK11054 helD DNA helicase IV; 97.0 0.0054 1.2E-07 63.5 11.0 68 56-125 195-266 (684)
230 PRK12422 chromosomal replicati 97.0 0.0049 1.1E-07 60.7 10.1 104 73-206 142-247 (445)
231 TIGR00362 DnaA chromosomal rep 97.0 0.0044 9.5E-08 60.5 9.6 75 73-177 137-213 (405)
232 PRK13709 conjugal transfer nic 96.9 0.01 2.2E-07 66.9 13.2 125 54-203 964-1099(1747)
233 PRK10919 ATP-dependent DNA hel 96.9 0.0045 9.8E-08 64.4 9.7 67 57-125 2-72 (672)
234 PRK12901 secA preprotein trans 96.9 0.0013 2.8E-08 69.1 5.5 120 54-175 166-302 (1112)
235 PF05127 Helicase_RecD: Helica 96.9 0.00048 1E-08 58.5 1.8 116 76-206 1-125 (177)
236 PF06745 KaiC: KaiC; InterPro 96.9 0.0063 1.4E-07 54.3 9.0 128 71-203 18-159 (226)
237 PRK14087 dnaA chromosomal repl 96.8 0.0065 1.4E-07 60.0 9.7 104 73-205 142-250 (450)
238 PRK04195 replication factor C 96.8 0.0082 1.8E-07 60.0 10.5 33 72-107 39-71 (482)
239 PF13173 AAA_14: AAA domain 96.8 0.0099 2.1E-07 47.9 9.2 35 71-106 1-35 (128)
240 PRK14086 dnaA chromosomal repl 96.8 0.0077 1.7E-07 60.9 10.1 103 74-206 316-422 (617)
241 PHA03333 putative ATPase subun 96.8 0.025 5.5E-07 57.4 13.4 154 58-216 170-343 (752)
242 PRK05986 cob(I)alamin adenolsy 96.8 0.0073 1.6E-07 51.9 8.2 41 70-110 20-60 (191)
243 PF00004 AAA: ATPase family as 96.8 0.011 2.5E-07 47.3 9.2 31 75-108 1-31 (132)
244 PRK00411 cdc6 cell division co 96.8 0.012 2.7E-07 57.1 10.9 34 73-106 56-91 (394)
245 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0075 1.6E-07 50.4 7.9 134 74-213 4-148 (159)
246 KOG1015|consensus 96.7 0.0089 1.9E-07 61.9 9.8 132 72-207 696-862 (1567)
247 PHA03368 DNA packaging termina 96.7 0.021 4.5E-07 57.8 12.2 122 72-205 254-391 (738)
248 COG3421 Uncharacterized protei 96.7 0.006 1.3E-07 60.2 8.1 137 77-213 2-174 (812)
249 TIGR03015 pepcterm_ATPase puta 96.7 0.0071 1.5E-07 55.4 8.4 36 57-92 23-63 (269)
250 TIGR03499 FlhF flagellar biosy 96.7 0.012 2.6E-07 54.4 9.7 84 72-172 194-281 (282)
251 PRK14088 dnaA chromosomal repl 96.7 0.025 5.4E-07 55.8 12.3 76 73-177 131-208 (440)
252 COG1435 Tdk Thymidine kinase [ 96.7 0.0075 1.6E-07 51.5 7.3 93 72-177 4-96 (201)
253 TIGR01075 uvrD DNA helicase II 96.6 0.011 2.4E-07 62.1 10.2 66 58-125 5-74 (715)
254 PRK11773 uvrD DNA-dependent he 96.6 0.011 2.3E-07 62.2 10.1 66 58-125 10-79 (721)
255 COG2256 MGS1 ATPase related to 96.6 0.0092 2E-07 56.4 8.3 95 73-207 49-143 (436)
256 PRK12724 flagellar biosynthesi 96.6 0.06 1.3E-06 52.1 14.0 115 73-207 224-347 (432)
257 TIGR01074 rep ATP-dependent DN 96.6 0.013 2.7E-07 61.2 10.3 66 58-125 2-71 (664)
258 TIGR02760 TraI_TIGR conjugativ 96.6 0.019 4E-07 66.3 12.3 124 55-203 1017-1149(1960)
259 COG1444 Predicted P-loop ATPas 96.6 0.013 2.9E-07 60.2 10.0 132 57-206 211-358 (758)
260 PRK08533 flagellar accessory p 96.5 0.014 3.1E-07 52.2 8.9 53 70-123 22-74 (230)
261 PTZ00112 origin recognition co 96.5 0.025 5.5E-07 59.1 11.5 19 75-93 784-802 (1164)
262 PRK00771 signal recognition pa 96.5 0.039 8.4E-07 54.1 12.5 120 73-206 96-219 (437)
263 TIGR00416 sms DNA repair prote 96.5 0.039 8.5E-07 54.5 12.6 87 72-176 94-183 (454)
264 PRK05973 replicative DNA helic 96.5 0.031 6.7E-07 50.0 10.8 56 68-124 60-115 (237)
265 PRK06731 flhF flagellar biosyn 96.5 0.079 1.7E-06 48.5 13.6 118 71-206 74-198 (270)
266 PF05496 RuvB_N: Holliday junc 96.5 0.0088 1.9E-07 52.6 7.0 21 73-93 51-71 (233)
267 PHA02544 44 clamp loader, smal 96.5 0.024 5.2E-07 53.3 10.5 39 163-201 100-138 (316)
268 PRK12727 flagellar biosynthesi 96.5 0.046 1E-06 54.3 12.3 125 70-214 348-478 (559)
269 PF03354 Terminase_1: Phage Te 96.4 0.012 2.6E-07 58.8 8.6 66 60-125 1-79 (477)
270 COG1474 CDC6 Cdc6-related prot 96.4 0.0091 2E-07 57.2 7.2 104 73-190 43-149 (366)
271 PLN03025 replication factor C 96.4 0.026 5.6E-07 53.2 10.1 24 73-96 35-58 (319)
272 KOG1133|consensus 96.4 0.0055 1.2E-07 61.4 5.4 44 54-97 12-59 (821)
273 cd00079 HELICc Helicase superf 96.4 0.0068 1.5E-07 48.5 5.3 72 297-379 16-98 (131)
274 KOG0991|consensus 96.4 0.0048 1E-07 54.0 4.5 25 73-97 49-73 (333)
275 PRK13833 conjugal transfer pro 96.3 0.0093 2E-07 55.9 6.7 55 58-113 129-187 (323)
276 COG0553 HepA Superfamily II DN 96.3 0.015 3.3E-07 62.4 9.3 144 57-204 338-510 (866)
277 TIGR01073 pcrA ATP-dependent D 96.3 0.024 5.3E-07 59.7 10.3 66 58-125 5-74 (726)
278 TIGR00064 ftsY signal recognit 96.3 0.054 1.2E-06 49.8 11.3 122 73-206 73-204 (272)
279 PRK14723 flhF flagellar biosyn 96.3 0.033 7.1E-07 57.9 10.6 115 72-205 185-306 (767)
280 COG4962 CpaF Flp pilus assembl 96.2 0.0068 1.5E-07 56.3 5.0 60 55-115 154-215 (355)
281 COG2909 MalT ATP-dependent tra 96.2 0.036 7.8E-07 57.3 10.3 133 71-206 36-172 (894)
282 TIGR03881 KaiC_arch_4 KaiC dom 96.2 0.042 9.1E-07 49.0 9.9 50 71-121 19-68 (229)
283 PF05621 TniB: Bacterial TniB 96.1 0.02 4.4E-07 52.6 7.5 129 58-200 38-186 (302)
284 cd00984 DnaB_C DnaB helicase C 96.1 0.047 1E-06 49.1 10.0 47 70-116 11-61 (242)
285 TIGR02782 TrbB_P P-type conjug 96.1 0.017 3.8E-07 53.8 7.3 93 58-173 117-214 (299)
286 PRK13894 conjugal transfer ATP 96.1 0.011 2.5E-07 55.4 6.1 54 58-112 133-190 (319)
287 PTZ00293 thymidine kinase; Pro 96.1 0.048 1E-06 47.7 9.4 85 72-175 4-89 (211)
288 KOG1131|consensus 96.1 0.072 1.6E-06 52.0 11.2 70 54-123 12-90 (755)
289 COG2804 PulE Type II secretory 96.1 0.014 3E-07 57.0 6.4 43 58-101 242-286 (500)
290 TIGR01425 SRP54_euk signal rec 96.1 0.14 3.1E-06 49.9 13.3 129 74-214 102-235 (429)
291 TIGR00708 cobA cob(I)alamin ad 96.0 0.026 5.7E-07 47.8 7.1 35 74-108 7-41 (173)
292 PRK10416 signal recognition pa 96.0 0.13 2.8E-06 48.4 12.5 123 72-206 114-246 (318)
293 TIGR02928 orc1/cdc6 family rep 96.0 0.094 2E-06 50.3 11.9 21 73-93 41-61 (365)
294 PRK13851 type IV secretion sys 96.0 0.011 2.4E-07 56.0 5.3 45 68-113 158-202 (344)
295 PRK13341 recombination factor 96.0 0.034 7.4E-07 58.0 9.2 40 163-207 109-148 (725)
296 PRK06067 flagellar accessory p 96.0 0.066 1.4E-06 48.0 10.0 53 71-124 24-76 (234)
297 KOG2028|consensus 96.0 0.016 3.5E-07 54.1 6.0 99 73-207 163-261 (554)
298 PRK05707 DNA polymerase III su 95.9 0.035 7.5E-07 52.4 8.5 40 58-97 4-47 (328)
299 cd01122 GP4d_helicase GP4d_hel 95.9 0.074 1.6E-06 48.8 10.3 40 69-108 27-67 (271)
300 CHL00181 cbbX CbbX; Provisiona 95.9 0.059 1.3E-06 50.0 9.6 22 72-93 59-80 (287)
301 COG0593 DnaA ATPase involved i 95.9 0.051 1.1E-06 52.4 9.2 105 72-207 113-221 (408)
302 TIGR02785 addA_Gpos recombinat 95.8 0.03 6.5E-07 62.3 8.7 66 58-125 2-70 (1232)
303 TIGR02881 spore_V_K stage V sp 95.8 0.066 1.4E-06 48.9 9.6 20 73-92 43-62 (261)
304 PRK13342 recombination factor 95.8 0.049 1.1E-06 53.3 9.3 20 73-92 37-56 (413)
305 TIGR02012 tigrfam_recA protein 95.8 0.012 2.6E-07 55.0 4.7 90 71-176 54-146 (321)
306 PF05729 NACHT: NACHT domain 95.8 0.063 1.4E-06 44.8 8.8 42 74-115 2-48 (166)
307 COG4626 Phage terminase-like p 95.8 0.11 2.5E-06 51.3 11.4 151 49-203 53-224 (546)
308 TIGR01547 phage_term_2 phage t 95.8 0.14 3.1E-06 49.8 12.3 125 74-207 3-143 (396)
309 COG0470 HolB ATPase involved i 95.8 0.04 8.8E-07 51.8 8.2 26 72-97 23-49 (325)
310 PRK07003 DNA polymerase III su 95.8 0.029 6.2E-07 57.9 7.4 22 74-95 40-61 (830)
311 PRK14956 DNA polymerase III su 95.7 0.042 9.2E-07 54.1 8.3 22 74-95 42-63 (484)
312 PRK10867 signal recognition pa 95.7 0.23 5.1E-06 48.6 13.3 120 74-205 102-226 (433)
313 PRK07414 cob(I)yrinic acid a,c 95.7 0.05 1.1E-06 46.1 7.6 139 73-212 22-167 (178)
314 PRK09112 DNA polymerase III su 95.7 0.04 8.7E-07 52.5 7.9 30 69-98 39-71 (351)
315 PRK04841 transcriptional regul 95.7 0.086 1.9E-06 57.1 11.4 43 163-205 121-163 (903)
316 PRK06620 hypothetical protein; 95.6 0.037 8.1E-07 48.9 6.9 18 73-90 45-62 (214)
317 TIGR02688 conserved hypothetic 95.6 0.072 1.6E-06 51.4 9.1 26 67-92 204-229 (449)
318 PF13177 DNA_pol3_delta2: DNA 95.6 0.03 6.4E-07 47.2 5.9 122 73-204 20-142 (162)
319 cd01130 VirB11-like_ATPase Typ 95.6 0.029 6.2E-07 48.5 6.0 50 58-108 10-60 (186)
320 PRK08691 DNA polymerase III su 95.6 0.03 6.5E-07 57.4 6.8 23 74-96 40-62 (709)
321 PRK14958 DNA polymerase III su 95.6 0.026 5.6E-07 56.6 6.3 23 74-96 40-62 (509)
322 COG0467 RAD55 RecA-superfamily 95.6 0.075 1.6E-06 48.5 8.9 55 70-125 21-75 (260)
323 PRK08769 DNA polymerase III su 95.5 0.099 2.1E-06 49.1 9.6 137 58-203 5-152 (319)
324 PRK13900 type IV secretion sys 95.5 0.017 3.7E-07 54.6 4.6 44 69-113 157-200 (332)
325 PRK07994 DNA polymerase III su 95.5 0.039 8.5E-07 56.5 7.3 22 75-96 41-62 (647)
326 PF01443 Viral_helicase1: Vira 95.5 0.021 4.5E-07 51.1 4.7 19 75-93 1-19 (234)
327 TIGR03877 thermo_KaiC_1 KaiC d 95.5 0.027 5.9E-07 50.6 5.5 53 71-124 20-72 (237)
328 TIGR02880 cbbX_cfxQ probable R 95.4 0.084 1.8E-06 48.9 8.8 19 72-90 58-76 (284)
329 COG2109 BtuR ATP:corrinoid ade 95.4 0.16 3.6E-06 43.1 9.6 136 74-214 30-176 (198)
330 COG0653 SecA Preprotein transl 95.4 0.044 9.5E-07 56.9 7.3 119 55-175 78-212 (822)
331 PF00265 TK: Thymidine kinase; 95.4 0.02 4.4E-07 48.9 4.2 38 74-111 3-40 (176)
332 PRK09354 recA recombinase A; P 95.4 0.022 4.7E-07 53.9 4.7 89 72-176 60-151 (349)
333 COG0466 Lon ATP-dependent Lon 95.4 0.075 1.6E-06 54.0 8.6 115 50-191 320-445 (782)
334 COG1066 Sms Predicted ATP-depe 95.4 0.14 3.1E-06 48.8 9.9 94 64-176 80-181 (456)
335 PRK14949 DNA polymerase III su 95.3 0.076 1.7E-06 55.9 8.8 21 75-95 41-61 (944)
336 PF12846 AAA_10: AAA-like doma 95.3 0.028 6E-07 52.1 5.3 43 72-114 1-43 (304)
337 PRK14960 DNA polymerase III su 95.3 0.048 1E-06 55.6 7.1 23 74-96 39-61 (702)
338 KOG0058|consensus 95.3 0.056 1.2E-06 55.0 7.5 48 68-117 490-540 (716)
339 PHA00729 NTP-binding motif con 95.2 0.058 1.3E-06 47.7 6.7 20 73-92 18-37 (226)
340 PF03796 DnaB_C: DnaB-like hel 95.2 0.1 2.2E-06 47.6 8.6 133 70-203 17-179 (259)
341 PRK14963 DNA polymerase III su 95.2 0.1 2.2E-06 52.3 9.2 21 75-95 39-59 (504)
342 KOG2228|consensus 95.2 0.22 4.7E-06 46.3 10.4 131 71-214 48-191 (408)
343 PRK14962 DNA polymerase III su 95.2 0.066 1.4E-06 53.1 7.7 20 74-93 38-57 (472)
344 PRK12323 DNA polymerase III su 95.2 0.048 1E-06 55.5 6.8 23 74-96 40-62 (700)
345 COG3973 Superfamily I DNA and 95.2 0.14 3E-06 51.1 9.6 65 61-125 213-285 (747)
346 TIGR00959 ffh signal recogniti 95.2 0.39 8.4E-06 47.0 12.8 121 74-206 101-226 (428)
347 PRK06995 flhF flagellar biosyn 95.2 0.38 8.3E-06 47.7 12.8 115 72-206 256-378 (484)
348 PRK14961 DNA polymerase III su 95.2 0.059 1.3E-06 51.8 7.1 22 74-95 40-61 (363)
349 PF01637 Arch_ATPase: Archaeal 95.1 0.021 4.7E-07 50.6 3.8 36 72-108 20-56 (234)
350 PF00437 T2SE: Type II/IV secr 95.1 0.024 5.3E-07 52.0 4.2 52 60-112 114-167 (270)
351 PRK09087 hypothetical protein; 95.1 0.23 5E-06 44.3 10.3 17 74-90 46-62 (226)
352 PRK10436 hypothetical protein; 95.1 0.05 1.1E-06 53.7 6.4 48 50-100 196-245 (462)
353 cd01129 PulE-GspE PulE/GspE Th 95.0 0.058 1.3E-06 49.4 6.4 58 51-111 59-119 (264)
354 PRK09361 radB DNA repair and r 95.0 0.12 2.6E-06 45.9 8.3 38 72-109 23-60 (225)
355 PHA00350 putative assembly pro 95.0 0.16 3.5E-06 48.9 9.4 30 75-105 4-34 (399)
356 COG2255 RuvB Holliday junction 95.0 0.081 1.7E-06 48.0 6.8 21 73-93 53-73 (332)
357 cd01393 recA_like RecA is a b 95.0 0.096 2.1E-06 46.5 7.6 97 71-175 18-126 (226)
358 TIGR00767 rho transcription te 95.0 0.023 4.9E-07 54.5 3.6 28 69-97 165-192 (415)
359 PRK07471 DNA polymerase III su 95.0 0.12 2.7E-06 49.5 8.6 125 74-204 43-181 (365)
360 PRK05896 DNA polymerase III su 94.9 0.06 1.3E-06 54.5 6.6 24 73-96 39-62 (605)
361 PRK13531 regulatory ATPase Rav 94.9 0.084 1.8E-06 52.0 7.2 25 67-91 34-58 (498)
362 PRK00440 rfc replication facto 94.9 0.33 7.3E-06 45.4 11.3 20 74-93 40-59 (319)
363 PRK09111 DNA polymerase III su 94.8 0.17 3.8E-06 51.7 9.7 24 73-96 47-70 (598)
364 PRK14964 DNA polymerase III su 94.8 0.042 9.1E-07 54.5 5.0 22 73-94 36-57 (491)
365 PRK14721 flhF flagellar biosyn 94.8 0.51 1.1E-05 46.0 12.3 122 72-214 191-320 (420)
366 PRK11331 5-methylcytosine-spec 94.8 0.17 3.7E-06 49.4 9.0 34 58-91 180-213 (459)
367 PF02534 T4SS-DNA_transf: Type 94.8 0.03 6.6E-07 55.8 4.1 55 73-129 45-99 (469)
368 PRK14952 DNA polymerase III su 94.8 0.1 2.3E-06 53.0 7.9 22 75-96 38-59 (584)
369 PRK14957 DNA polymerase III su 94.7 0.17 3.7E-06 51.0 9.2 22 74-95 40-61 (546)
370 PF05876 Terminase_GpA: Phage 94.7 0.14 3E-06 52.1 8.6 70 56-125 15-88 (557)
371 PRK07764 DNA polymerase III su 94.7 0.12 2.7E-06 54.7 8.5 23 74-96 39-61 (824)
372 KOG0739|consensus 94.7 0.43 9.4E-06 43.7 10.6 79 67-177 156-239 (439)
373 PRK08506 replicative DNA helic 94.7 0.22 4.8E-06 49.6 9.9 133 70-203 190-351 (472)
374 TIGR00678 holB DNA polymerase 94.6 0.21 4.5E-06 43.1 8.4 24 73-96 15-38 (188)
375 PRK06904 replicative DNA helic 94.6 0.33 7.2E-06 48.3 10.8 134 69-203 218-383 (472)
376 PRK07940 DNA polymerase III su 94.6 0.19 4.1E-06 48.7 8.9 24 73-96 37-60 (394)
377 TIGR00596 rad1 DNA repair prot 94.5 0.12 2.6E-06 54.6 7.9 68 139-206 7-74 (814)
378 PRK08699 DNA polymerase III su 94.5 0.34 7.5E-06 45.7 10.3 39 59-97 3-46 (325)
379 PRK11034 clpA ATP-dependent Cl 94.4 0.32 7E-06 51.2 10.8 22 72-93 207-228 (758)
380 TIGR03600 phage_DnaB phage rep 94.4 0.27 5.9E-06 48.3 9.8 39 69-107 191-230 (421)
381 cd01126 TraG_VirD4 The TraG/Tr 94.4 0.03 6.4E-07 54.3 2.9 54 74-129 1-54 (384)
382 KOG2004|consensus 94.4 0.18 3.9E-06 51.4 8.2 114 51-191 409-533 (906)
383 PRK04328 hypothetical protein; 94.3 0.096 2.1E-06 47.5 5.9 53 71-124 22-74 (249)
384 PRK06964 DNA polymerase III su 94.3 0.26 5.7E-06 46.7 9.0 39 59-97 3-46 (342)
385 COG0552 FtsY Signal recognitio 94.3 1.6 3.5E-05 40.8 13.7 122 74-207 141-272 (340)
386 PRK06871 DNA polymerase III su 94.3 0.39 8.5E-06 45.2 10.0 39 59-97 4-49 (325)
387 TIGR00635 ruvB Holliday juncti 94.3 0.076 1.6E-06 49.6 5.3 19 73-91 31-49 (305)
388 KOG0298|consensus 94.3 0.2 4.4E-06 53.9 8.7 133 71-207 373-553 (1394)
389 KOG1513|consensus 94.2 0.083 1.8E-06 54.1 5.6 145 58-205 265-455 (1300)
390 TIGR03743 SXT_TraD conjugative 94.2 0.15 3.3E-06 52.5 7.6 55 71-125 175-231 (634)
391 PRK09376 rho transcription ter 94.2 0.064 1.4E-06 51.3 4.5 37 60-97 154-193 (416)
392 PRK00080 ruvB Holliday junctio 94.2 0.12 2.6E-06 48.9 6.5 21 73-93 52-72 (328)
393 PF02572 CobA_CobO_BtuR: ATP:c 94.2 0.11 2.3E-06 44.1 5.4 38 74-111 5-42 (172)
394 COG1132 MdlB ABC-type multidru 94.1 0.15 3.3E-06 52.2 7.6 37 69-105 352-388 (567)
395 TIGR02639 ClpA ATP-dependent C 94.1 0.32 6.9E-06 51.4 10.1 25 72-96 203-227 (731)
396 TIGR02538 type_IV_pilB type IV 94.1 0.11 2.3E-06 53.1 6.3 47 50-99 294-342 (564)
397 TIGR00763 lon ATP-dependent pr 94.1 0.29 6.2E-06 52.0 9.8 21 72-92 347-367 (775)
398 TIGR01650 PD_CobS cobaltochela 94.1 0.45 9.9E-06 44.6 9.9 38 55-92 46-84 (327)
399 TIGR02788 VirB11 P-type DNA tr 94.1 0.084 1.8E-06 49.5 5.1 43 69-112 141-183 (308)
400 COG2805 PilT Tfp pilus assembl 94.0 0.056 1.2E-06 49.4 3.7 27 72-99 125-151 (353)
401 PRK14969 DNA polymerase III su 94.0 0.11 2.5E-06 52.3 6.3 22 74-95 40-61 (527)
402 PRK06645 DNA polymerase III su 94.0 0.21 4.6E-06 50.0 8.1 24 73-96 44-67 (507)
403 PRK14951 DNA polymerase III su 94.0 0.13 2.9E-06 52.5 6.7 22 75-96 41-62 (618)
404 PF00154 RecA: recA bacterial 94.0 0.11 2.3E-06 48.7 5.6 88 72-175 53-143 (322)
405 PF14617 CMS1: U3-containing 9 94.0 0.14 3.1E-06 46.1 6.2 75 100-174 126-212 (252)
406 PF03969 AFG1_ATPase: AFG1-lik 93.9 0.43 9.3E-06 45.7 9.7 106 72-206 62-170 (362)
407 PF10412 TrwB_AAD_bind: Type I 93.9 0.067 1.5E-06 51.8 4.3 49 70-118 13-61 (386)
408 PRK07004 replicative DNA helic 93.9 0.3 6.6E-06 48.4 9.0 133 70-203 211-373 (460)
409 PRK07399 DNA polymerase III su 93.9 0.36 7.9E-06 45.3 9.0 60 141-203 103-162 (314)
410 COG0630 VirB11 Type IV secreto 93.9 0.086 1.9E-06 49.4 4.8 55 58-113 128-183 (312)
411 PF01935 DUF87: Domain of unkn 93.9 0.095 2.1E-06 46.8 4.9 44 72-115 23-67 (229)
412 PF13481 AAA_25: AAA domain; P 93.9 0.17 3.6E-06 43.7 6.3 54 71-125 31-94 (193)
413 KOG0742|consensus 93.8 0.11 2.3E-06 49.5 5.1 17 73-89 385-401 (630)
414 PRK10865 protein disaggregatio 93.7 0.59 1.3E-05 50.2 11.3 24 72-95 199-222 (857)
415 PRK05748 replicative DNA helic 93.7 0.41 8.8E-06 47.5 9.5 134 70-204 201-365 (448)
416 TIGR03878 thermo_KaiC_2 KaiC d 93.7 0.1 2.2E-06 47.6 4.9 38 71-108 35-72 (259)
417 COG3267 ExeA Type II secretory 93.7 0.34 7.5E-06 43.3 7.9 47 68-115 46-93 (269)
418 TIGR00665 DnaB replicative DNA 93.7 0.41 8.8E-06 47.2 9.4 132 70-203 193-354 (434)
419 cd01127 TrwB Bacterial conjuga 93.7 0.068 1.5E-06 52.3 3.9 47 70-116 40-86 (410)
420 TIGR03346 chaperone_ClpB ATP-d 93.6 0.42 9.1E-06 51.3 10.1 24 72-95 194-217 (852)
421 TIGR02868 CydC thiol reductant 93.6 0.17 3.8E-06 51.2 6.9 21 69-89 358-378 (529)
422 COG1702 PhoH Phosphate starvat 93.6 0.21 4.5E-06 46.6 6.6 67 58-135 129-197 (348)
423 PRK14959 DNA polymerase III su 93.6 0.21 4.5E-06 51.0 7.2 24 73-96 39-62 (624)
424 TIGR03819 heli_sec_ATPase heli 93.5 0.14 3E-06 48.7 5.5 55 58-113 163-218 (340)
425 COG1197 Mfd Transcription-repa 93.5 0.8 1.7E-05 49.4 11.6 78 92-175 795-885 (1139)
426 TIGR02237 recomb_radB DNA repa 93.5 0.12 2.7E-06 45.2 5.0 39 71-109 11-49 (209)
427 TIGR02533 type_II_gspE general 93.5 0.13 2.8E-06 51.3 5.6 54 50-106 220-276 (486)
428 cd00983 recA RecA is a bacter 93.5 0.15 3.3E-06 47.8 5.7 89 72-176 55-146 (325)
429 TIGR02640 gas_vesic_GvpN gas v 93.5 0.22 4.8E-06 45.5 6.7 36 58-93 3-42 (262)
430 PRK14955 DNA polymerase III su 93.5 0.33 7.2E-06 47.3 8.2 23 74-96 40-62 (397)
431 TIGR02525 plasmid_TraJ plasmid 93.5 0.18 3.9E-06 48.4 6.2 36 71-107 148-186 (372)
432 PRK14965 DNA polymerase III su 93.4 0.17 3.8E-06 51.6 6.5 22 74-95 40-61 (576)
433 PHA02542 41 41 helicase; Provi 93.4 0.54 1.2E-05 46.7 9.7 36 72-107 190-225 (473)
434 TIGR03880 KaiC_arch_3 KaiC dom 93.4 0.21 4.5E-06 44.4 6.3 54 71-125 15-68 (224)
435 PRK14948 DNA polymerase III su 93.4 0.21 4.5E-06 51.4 6.9 24 73-96 39-62 (620)
436 PRK03992 proteasome-activating 93.4 0.42 9.1E-06 46.4 8.7 21 72-92 165-185 (389)
437 cd01394 radB RadB. The archaea 93.3 0.13 2.7E-06 45.6 4.6 36 72-107 19-54 (218)
438 PRK13897 type IV secretion sys 93.3 0.094 2E-06 53.5 4.2 56 72-129 158-213 (606)
439 PRK05563 DNA polymerase III su 93.2 0.18 3.8E-06 51.4 6.2 23 73-95 39-61 (559)
440 TIGR02397 dnaX_nterm DNA polym 93.2 0.28 6E-06 46.8 7.3 20 74-93 38-57 (355)
441 TIGR03689 pup_AAA proteasome A 93.2 0.39 8.4E-06 48.0 8.3 19 72-90 216-234 (512)
442 COG1219 ClpX ATP-dependent pro 93.1 0.068 1.5E-06 49.2 2.7 20 72-91 97-116 (408)
443 PRK08760 replicative DNA helic 93.1 0.72 1.6E-05 46.0 10.1 132 70-203 227-388 (476)
444 PRK10787 DNA-binding ATP-depen 93.1 0.44 9.6E-06 50.5 9.0 44 146-192 402-445 (784)
445 CHL00095 clpC Clp protease ATP 93.0 0.62 1.3E-05 49.9 10.1 25 72-96 200-224 (821)
446 KOG0741|consensus 93.0 0.21 4.6E-06 49.1 5.8 17 73-89 257-273 (744)
447 PRK07133 DNA polymerase III su 92.9 0.25 5.4E-06 51.2 6.7 22 74-95 42-63 (725)
448 TIGR02858 spore_III_AA stage I 92.9 0.87 1.9E-05 41.7 9.6 17 73-89 112-128 (270)
449 PRK08840 replicative DNA helic 92.9 0.83 1.8E-05 45.4 10.2 134 69-203 214-378 (464)
450 PRK14950 DNA polymerase III su 92.9 0.39 8.5E-06 49.2 8.1 21 74-94 40-60 (585)
451 CHL00176 ftsH cell division pr 92.9 0.49 1.1E-05 48.9 8.7 20 73-92 217-236 (638)
452 PRK08451 DNA polymerase III su 92.8 0.46 1E-05 47.8 8.3 22 75-96 39-60 (535)
453 TIGR03754 conj_TOL_TraD conjug 92.8 0.29 6.4E-06 50.0 6.9 55 71-125 179-235 (643)
454 PRK06090 DNA polymerase III su 92.7 0.52 1.1E-05 44.3 8.1 40 58-97 4-50 (319)
455 PHA00012 I assembly protein 92.7 1.1 2.3E-05 41.9 9.8 29 75-103 4-32 (361)
456 TIGR02655 circ_KaiC circadian 92.7 0.2 4.4E-06 50.1 5.7 104 64-175 250-365 (484)
457 KOG0738|consensus 92.7 0.41 9E-06 45.4 7.1 73 73-177 246-318 (491)
458 cd01131 PilT Pilus retraction 92.6 0.17 3.7E-06 44.1 4.4 37 74-111 3-41 (198)
459 cd01128 rho_factor Transcripti 92.4 0.081 1.8E-06 47.9 2.2 28 69-97 13-40 (249)
460 PRK13695 putative NTPase; Prov 92.4 4.6 9.9E-05 34.1 13.0 20 74-93 2-21 (174)
461 PRK13850 type IV secretion sys 92.4 0.16 3.5E-06 52.5 4.6 55 72-128 139-193 (670)
462 PRK08006 replicative DNA helic 92.4 1.2 2.6E-05 44.3 10.5 134 69-203 221-385 (471)
463 cd00544 CobU Adenosylcobinamid 92.4 0.22 4.8E-06 42.2 4.7 83 75-174 2-84 (169)
464 TIGR01243 CDC48 AAA family ATP 92.4 0.8 1.7E-05 48.4 9.9 19 72-90 212-230 (733)
465 PF13555 AAA_29: P-loop contai 92.3 0.12 2.5E-06 35.7 2.4 18 72-89 23-40 (62)
466 KOG1001|consensus 92.3 0.93 2E-05 46.9 9.8 134 74-215 154-305 (674)
467 PF03237 Terminase_6: Terminas 92.3 1.6 3.5E-05 41.5 11.2 97 76-178 1-112 (384)
468 TIGR02767 TraG-Ti Ti-type conj 92.2 0.21 4.6E-06 51.2 5.1 56 72-129 211-267 (623)
469 PRK13822 conjugal transfer cou 92.1 0.19 4.2E-06 51.7 4.8 56 72-129 224-279 (641)
470 PRK05636 replicative DNA helic 92.1 0.96 2.1E-05 45.4 9.5 37 70-106 263-300 (505)
471 PRK09165 replicative DNA helic 92.1 1.2 2.5E-05 44.8 10.1 106 70-177 215-355 (497)
472 PRK07993 DNA polymerase III su 92.1 0.56 1.2E-05 44.4 7.5 40 58-97 3-49 (334)
473 TIGR01420 pilT_fam pilus retra 92.1 0.24 5.2E-06 47.2 5.1 41 71-112 121-163 (343)
474 cd03239 ABC_SMC_head The struc 92.0 0.56 1.2E-05 40.1 6.8 42 162-203 115-157 (178)
475 TIGR01241 FtsH_fam ATP-depende 91.9 0.92 2E-05 45.6 9.3 20 73-92 89-108 (495)
476 COG0210 UvrD Superfamily I DNA 91.9 0.45 9.8E-06 49.6 7.4 66 58-125 3-72 (655)
477 PF13479 AAA_24: AAA domain 91.9 0.25 5.4E-06 43.6 4.7 78 72-175 3-80 (213)
478 COG0468 RecA RecA/RadA recombi 91.9 0.31 6.8E-06 44.7 5.4 90 72-175 60-153 (279)
479 KOG0990|consensus 91.9 0.31 6.7E-06 45.0 5.2 37 163-200 131-167 (360)
480 PF08423 Rad51: Rad51; InterP 91.9 0.47 1E-05 43.2 6.5 104 65-175 26-145 (256)
481 PRK09519 recA DNA recombinatio 91.9 0.5 1.1E-05 49.6 7.3 89 72-176 60-151 (790)
482 cd03115 SRP The signal recogni 91.9 0.28 6.1E-06 41.6 4.8 33 75-107 3-35 (173)
483 KOG1806|consensus 91.8 0.35 7.7E-06 51.0 6.1 68 57-124 738-807 (1320)
484 COG3854 SpoIIIAA ncharacterize 91.8 0.67 1.4E-05 41.0 6.9 19 71-89 135-154 (308)
485 TIGR02655 circ_KaiC circadian 91.8 0.32 7E-06 48.7 5.8 54 71-125 20-74 (484)
486 TIGR00602 rad24 checkpoint pro 91.8 0.82 1.8E-05 47.0 8.7 20 73-92 111-130 (637)
487 PRK12608 transcription termina 91.7 0.11 2.4E-06 49.5 2.2 32 60-91 118-152 (380)
488 PRK13764 ATPase; Provisional 91.7 0.3 6.5E-06 49.8 5.4 42 70-112 255-297 (602)
489 COG1485 Predicted ATPase [Gene 91.7 2.4 5.1E-05 40.0 10.8 131 50-207 18-174 (367)
490 PRK14954 DNA polymerase III su 91.7 0.54 1.2E-05 48.3 7.3 23 74-96 40-62 (620)
491 PLN00020 ribulose bisphosphate 91.5 0.32 7E-06 46.2 5.0 22 73-94 149-170 (413)
492 PF07279 DUF1442: Protein of u 91.5 3.7 8.1E-05 35.9 11.1 92 61-172 28-124 (218)
493 TIGR01243 CDC48 AAA family ATP 91.5 1.2 2.6E-05 47.1 10.0 21 72-92 487-507 (733)
494 TIGR02524 dot_icm_DotB Dot/Icm 91.3 0.42 9.1E-06 45.7 5.8 26 71-97 133-158 (358)
495 cd01125 repA Hexameric Replica 91.3 1 2.2E-05 40.5 8.0 34 74-107 3-48 (239)
496 TIGR02759 TraD_Ftype type IV c 91.2 0.22 4.9E-06 50.6 4.1 44 71-114 175-218 (566)
497 KOG1016|consensus 91.2 1.8 4E-05 44.6 10.2 52 72-125 282-336 (1387)
498 PRK06321 replicative DNA helic 91.2 0.81 1.8E-05 45.5 7.8 132 70-203 224-388 (472)
499 PF13207 AAA_17: AAA domain; P 91.1 0.44 9.6E-06 37.5 5.0 19 75-93 2-20 (121)
500 KOG0741|consensus 91.1 1.7 3.7E-05 43.1 9.5 33 74-108 540-572 (744)
No 1
>KOG0948|consensus
Probab=100.00 E-value=5.1e-53 Score=406.05 Aligned_cols=366 Identities=70% Similarity=1.146 Sum_probs=336.6
Q ss_pred eeEEeeehhchhceeccCCCCCcccccccc--cCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHH
Q psy6275 17 MKVIVVETLEACLHEVALPPDLEYQPLAQS--KEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~ 94 (391)
.......+.+.|..++.+|.+.++.++.+. -....+.++|++.|+|..+|..+.++++++++|.|++|||.++.+++.
T Consensus 87 ~~~~~~~~~~~c~HeVavP~~~dY~p~~~~~~~~~pAk~YPF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA 166 (1041)
T KOG0948|consen 87 IVVTKREDREGCRHEVAVPPNYDYTPLLPKIFGKPPAKTYPFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIA 166 (1041)
T ss_pred eeeeeeeccccceeeeecCCccccCccccccCCCCcccCCCcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHH
Confidence 334445567899999999988888885444 346788899999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc
Q psy6275 95 SSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 95 ~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~ 174 (391)
..++...||+|..|-++|.+|-++++..-+++||+.+|+.++++++..+|+|.+.|.+++.++..-++.+.++|+||+|.
T Consensus 167 ~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHY 246 (1041)
T KOG0948|consen 167 MSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHY 246 (1041)
T ss_pred HHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-
Q psy6275 175 MRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN- 253 (391)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~- 253 (391)
|-|..+|..|+..+..+|.+.+.+++|||+||+.+|++|+.....+|++++..+.||+|++||+++.++++++++||++
T Consensus 247 MRDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~ 326 (1041)
T KOG0948|consen 247 MRDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKG 326 (1041)
T ss_pred ccccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhchHHHHHHhhhhhhhh-ccCCCCCCCCCCCCC--CCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 254 KFKEHNYQVAMNVLANAGDAA-KAGDHKGGRKGGPKG--GVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
.|++++|+.+|..+...+... ......++++|+.++ ..+..+..+++.+.++...|+|||+-++++||.+|..|.++
T Consensus 327 ~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kl 406 (1041)
T KOG0948|consen 327 KFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKL 406 (1041)
T ss_pred ccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccC
Confidence 999999999999999976665 233334456655433 34558999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCc
Q psy6275 331 NFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPY 382 (391)
Q Consensus 331 g~~~~~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~ 382 (391)
.++..+++..+...|.++++.|..+|+.+||+..+..+|.|||||||+||-.
T Consensus 407 dfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLP 458 (1041)
T KOG0948|consen 407 DFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLP 458 (1041)
T ss_pred cCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchH
Confidence 9999999999999999999999999999999999999999999999999854
No 2
>KOG0330|consensus
Probab=100.00 E-value=1.3e-43 Score=319.54 Aligned_cols=287 Identities=19% Similarity=0.182 Sum_probs=240.6
Q ss_pred cCCCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcc
Q psy6275 33 ALPPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTP 108 (391)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P 108 (391)
....+|..+++.+++.+++...++. ||++|+++||.++.|++++..|.||||||.+|++|+++.+-. .++++|++|
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtP 137 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTP 137 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecC
Confidence 3456899999999999999999997 999999999999999999999999999999999999998844 478999999
Q ss_pred cHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccC
Q psy6275 109 IKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~ 176 (391)
||||+.|+...+..++. .+.++.|+... ..+++|+|+||++|++++.+ +...+..++++|+||||+++
T Consensus 138 tRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlL 217 (476)
T KOG0330|consen 138 TRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLL 217 (476)
T ss_pred cHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhh
Confidence 99999999999999977 55567787663 45799999999999999984 45678899999999999999
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCC-c-CceEeeccCCCCCeeeeecCch
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRP-T-PLQHYLFPNGGDGIHLIVDDNK 254 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~-~-~i~~~~~~~~~~~~~~~v~~~~ 254 (391)
++.|...++.|+..++..+|.+++|||++.. +.+........|..+..+.... + .+.+++..++..
T Consensus 218 d~dF~~~ld~ILk~ip~erqt~LfsATMt~k--v~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k---------- 285 (476)
T KOG0330|consen 218 DMDFEEELDYILKVIPRERQTFLFSATMTKK--VRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGK---------- 285 (476)
T ss_pred hhhhHHHHHHHHHhcCccceEEEEEeecchh--hHHHHhhccCCCeEEeccchhcchHHhhhheEecccc----------
Confidence 9999999999999999999999999999876 2233335556777766554332 2 466666655532
Q ss_pred hhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC
Q psy6275 255 FKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE 334 (391)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~ 334 (391)
.+-..|+.++++..+.++||||+|...++.++-.|+..|+.+
T Consensus 286 --------------------------------------~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a 327 (476)
T KOG0330|consen 286 --------------------------------------DKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQA 327 (476)
T ss_pred --------------------------------------ccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcce
Confidence 223478888888888899999999999999999999999887
Q ss_pred h--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 335 T--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 335 ~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
- +-|.-..+.|+. ..++|++|| +.+||.|++|+++
T Consensus 328 ~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD-----------VaSRGLDip~Vd~ 371 (476)
T KOG0330|consen 328 IPLHGQMSQSKRLGALNKFKAGARSILVCTD-----------VASRGLDIPHVDV 371 (476)
T ss_pred ecccchhhHHHHHHHHHHHhccCCcEEEecc-----------hhcccCCCCCceE
Confidence 4 456666777777 567777775 9999999999876
No 3
>KOG0947|consensus
Probab=100.00 E-value=1.3e-41 Score=334.89 Aligned_cols=333 Identities=49% Similarity=0.800 Sum_probs=280.0
Q ss_pred cCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy6275 47 KEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD 126 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~ 126 (391)
+......++|++..+|++||-++..|.++++.|+|++|||.++.+++.-.-....|.+|..|-++|.+|-++.|+..++.
T Consensus 287 Vpe~a~~~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 287 VPEMALIYPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred chhHHhhCCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccc
Confidence 34456678999999999999999999999999999999999998888777778899999999999999999999999999
Q ss_pred ceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 127 VGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 127 v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
+++++|+..+++.+.++|+|.+.|.+++.++...++++.+||+||+|.+.|..+|..|+.++..+|...++|++|||.||
T Consensus 367 vgLlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATVPN 446 (1248)
T KOG0947|consen 367 VGLLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATVPN 446 (1248)
T ss_pred cceeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEEEEeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-hhhhhchHHHHHHhhh---hhhhhccCC----
Q psy6275 207 ASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLAN---AGDAAKAGD---- 278 (391)
Q Consensus 207 ~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~---- 278 (391)
+.+|++|++..+...++|+....||+|++++++.- +....+++.+ .|....+..+...+.. .-+......
T Consensus 447 ~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~--~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~r 524 (1248)
T KOG0947|consen 447 TLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK--KSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGR 524 (1248)
T ss_pred hHHHHHHhhhccCceEEEEecCCCccceEEEEEec--cceehhhcccchhhhhcchhhhhhhcccccccccccccccccc
Confidence 99999999999999999999999999999999863 3445455554 3333434333333321 000000000
Q ss_pred --CCCC-CCCCCCC-------C----CcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHHHH
Q psy6275 279 --HKGG-RKGGPKG-------G----VQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDV 344 (391)
Q Consensus 279 --~~~~-~~~~~~~-------~----~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~~~ 344 (391)
.+++ +.+...+ + .+..+..++..+.....-|+||||-|++.|+..|+.|....++...+++.+.-+
T Consensus 525 gs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lf 604 (1248)
T KOG0947|consen 525 GSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLF 604 (1248)
T ss_pred cccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHH
Confidence 0000 0000000 0 112356677777777778999999999999999999999999999999999999
Q ss_pred HHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCC
Q psy6275 345 FSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKP 381 (391)
Q Consensus 345 ~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~ 381 (391)
+...+..|...|+.+||+..+.+++.|||++||||+-
T Consensus 605 l~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlL 641 (1248)
T KOG0947|consen 605 LSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLL 641 (1248)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHhhcchhhcccch
Confidence 9999999999999999999999999999999999985
No 4
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.4e-41 Score=340.64 Aligned_cols=335 Identities=52% Similarity=0.855 Sum_probs=287.9
Q ss_pred cCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccc
Q psy6275 47 KEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD 126 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~ 126 (391)
.......+||++.++|++++..+.++++++++||||+|||.+..+++...+.++.+++|+.|.++|.+|.+..+...+++
T Consensus 109 ~~~~~~~~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgd 188 (1041)
T COG4581 109 LAPPAREYPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGD 188 (1041)
T ss_pred cCcHHHhCCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhh
Confidence 45566778999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred c----eeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcc
Q psy6275 127 V----GLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSA 202 (391)
Q Consensus 127 v----~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 202 (391)
+ ++++|+.++++++.++|+|.+.|.+++.++...++.+..||+||+|.|.|..+|..|+.++..++...++++|||
T Consensus 189 v~~~vGL~TGDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSA 268 (1041)
T COG4581 189 VADMVGLMTGDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSA 268 (1041)
T ss_pred hhhhccceecceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeC
Confidence 7 999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-hhhhhchHHHHHHhhhhh-hhhccCC--
Q psy6275 203 TIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLANAG-DAAKAGD-- 278 (391)
Q Consensus 203 T~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~-- 278 (391)
|++|+.+|+.|++.....+++++..+.||+|++++++.. ++++..++++ .+....+..+...+.... -..+.+.
T Consensus 269 Tv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~--~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~ 346 (1041)
T COG4581 269 TVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG--KGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGD 346 (1041)
T ss_pred CCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC--CceeeeecccccchhhcchhhhhhhhccchhccccCccc
Confidence 999999999999998999999999999999999999864 6788888887 566677666666555221 1111111
Q ss_pred ---CCCCCCCCCCCC--CcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHH-HHHHHHHHhhhc
Q psy6275 279 ---HKGGRKGGPKGG--VQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKL-VDDVFSNAMDVL 352 (391)
Q Consensus 279 ---~~~~~~~~~~~~--~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~-~~~~~~~~~~~l 352 (391)
..+..+++ +++ .......++..+...+.-++|+|+-+++.|+.++..+....+...+++.. +...+.+.+..|
T Consensus 347 ~~~~a~~~~~~-~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L 425 (1041)
T COG4581 347 VGRYARRTKAL-RGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDL 425 (1041)
T ss_pred ccccccccccc-CCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhc
Confidence 00111100 010 11233567888888888899999999999999999999877777766655 899999999999
Q ss_pred chhhccCc-chHhHHHHHHhhhhhccCCCCccc
Q psy6275 353 SEEDRKLP-QIENILPLLRRGIGIHHGVKPYGL 384 (391)
Q Consensus 353 ~~~d~~~~-~~~~~~~~l~~GI~~~h~~~~~~~ 384 (391)
..+|..++ ++..+..+|-|||++||+||-...
T Consensus 426 ~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~ 458 (1041)
T COG4581 426 AEEDRELPLQILEISALLLRGIAVHHAGLLPAI 458 (1041)
T ss_pred ChhhhcCcccHHHHHHHHhhhhhhhccccchHH
Confidence 99999997 999999999999999999996544
No 5
>KOG0331|consensus
Probab=100.00 E-value=2.9e-42 Score=329.55 Aligned_cols=285 Identities=20% Similarity=0.209 Sum_probs=232.8
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---------CCeEEEE
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---------SQRVIYT 106 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---------~~~vlvl 106 (391)
.|+++++++.....++..||+ |||+|.+.||.++.|++++..|.||||||++|++|++.++.. ++++||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 578888999999999999998 999999999999999999999999999999999999998864 6899999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+|||||+.|+.+.+.++.. +..+++|+.+..+ ..+|+|+||+++.+++..+...++.+.++|+||||+|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 9999999999999999988 3556888887644 4789999999999999999999999999999999999
Q ss_pred CccccchhHHHHHHHh-CCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC----CcCceEeeccCCCCCeeee
Q psy6275 176 RDKERGYVWEETLILL-SDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR----PTPLQHYLFPNGGDGIHLI 249 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~----~~~i~~~~~~~~~~~~~~~ 249 (391)
++++|.+.++.|+..+ +...|++++|||+|.. +.++.-+ ..+|..+...... ...+.|.+..++..
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~f---l~~~~~i~ig~~~~~~a~~~i~qive~~~~~----- 323 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDF---LNNPIQINVGNKKELKANHNIRQIVEVCDET----- 323 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHH---hcCceEEEecchhhhhhhcchhhhhhhcCHH-----
Confidence 9999999999999999 5566899999999987 7777743 3466655544331 22445544433310
Q ss_pred ecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc
Q psy6275 250 VDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 250 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~ 329 (391)
.. ...+..+++.......+++||||+|++.|+.|+..|+.
T Consensus 324 -----------~K-----------------------------~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~ 363 (519)
T KOG0331|consen 324 -----------AK-----------------------------LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR 363 (519)
T ss_pred -----------HH-----------------------------HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh
Confidence 00 12233455544444567999999999999999999998
Q ss_pred cCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 330 LNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 330 ~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
.++++ +.+|+.++..|++ ...+|++|| +.+||+||..+.+
T Consensus 364 ~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd-----------VAaRGLDi~dV~l 412 (519)
T KOG0331|consen 364 KGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD-----------VAARGLDVPDVDL 412 (519)
T ss_pred cCcceeeecccccHHHHHHHHHhcccCCcceEEEcc-----------cccccCCCccccE
Confidence 76655 4789998888877 667888885 9999999975443
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-40 Score=330.22 Aligned_cols=284 Identities=21% Similarity=0.267 Sum_probs=240.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--CC--e-EEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQ--R-VIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~--~-vlvl~P~ 109 (391)
..|..+++++.+.+.+.+.||+ |||+|.++||.++.|+|+++.|+||||||.+|.+|+++.+.. .. . +||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 5688999999999999999997 999999999999999999999999999999999999998862 21 2 9999999
Q ss_pred HHHHHHHHHHHHHhccc-----ceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 110 KALSNQKYREFEEQFKD-----VGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~~-----v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
|||+.|+++.+..+... +..++|+.... ..++|+|+||+++++++.+....+..+.++|+||||+|++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 99999999999998873 45688877642 3589999999999999999988899999999999999999
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCC----CCcCceEeeccCCCCCeeeeecCc
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDY----RPTPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~----~~~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
++|...++.++..++.+.|+++||||++.. +..+...++.+|..+..... ....++|+++.+...+
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~--i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~-------- 258 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDD--IRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEE-------- 258 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHH--HHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHH--------
Confidence 999999999999999999999999999885 44444456667776655522 3457888888765320
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN 333 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~ 333 (391)
++...|..++......++||||+|+..|+.++..|...|+.
T Consensus 259 ---------------------------------------~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~ 299 (513)
T COG0513 259 ---------------------------------------EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFK 299 (513)
T ss_pred ---------------------------------------HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCe
Confidence 13556777777666668999999999999999999998876
Q ss_pred C--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 334 E--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 334 ~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+ +++|....+.|++ ..++|++|| +.+|||||++..
T Consensus 300 ~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD-----------vaaRGiDi~~v~ 343 (513)
T COG0513 300 VAALHGDLPQEERDRALEKFKDGELRVLVATD-----------VAARGLDIPDVS 343 (513)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCCEEEEec-----------hhhccCCccccc
Confidence 5 3778888888887 778888885 999999998644
No 7
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.5e-40 Score=323.47 Aligned_cols=280 Identities=18% Similarity=0.287 Sum_probs=228.7
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+...+..+||+ |||+|.+|++.+.+|+|++++||||||||++|.+|+++.+.. ..+++|++||++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 4688999999999999999997 999999999999999999999999999999999999998854 358999999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+.+.++.+.. .+..++|+.+. ...++|+|+||+++..++.+....+++++++|+||||+|++++
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 99999999988753 45567787654 3467999999999999998887788999999999999999999
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC-CCcCceEeeccCCCCCeeeeecCchhhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY-RPTPLQHYLFPNGGDGIHLIVDDNKFKE 257 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~-~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 257 (391)
+...+..++..++...|++++|||+++. ..++. .+...+..+..... ....++++++.++..
T Consensus 164 ~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~---~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~------------- 227 (460)
T PRK11776 164 FQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQ---RFQRDPVEVKVESTHDLPAIEQRFYEVSPD------------- 227 (460)
T ss_pred cHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHH---HhcCCCEEEEECcCCCCCCeeEEEEEeCcH-------------
Confidence 9999999999999999999999999866 44444 33445555543332 233466666644321
Q ss_pred hchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC---
Q psy6275 258 HNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--- 334 (391)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--- 334 (391)
.+...+...+......++||||+|++.|+.+++.|...|+.+
T Consensus 228 -----------------------------------~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~ 272 (460)
T PRK11776 228 -----------------------------------ERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALAL 272 (460)
T ss_pred -----------------------------------HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 123355555665566789999999999999999999876654
Q ss_pred -----hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 -----TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 -----~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|+.+++.|++ ..++|++|| ++++|||++.
T Consensus 273 hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----------v~~rGiDi~~ 310 (460)
T PRK11776 273 HGDLEQRDRDQVLVRFANRSCSVLVATD-----------VAARGLDIKA 310 (460)
T ss_pred eCCCCHHHHHHHHHHHHcCCCcEEEEec-----------ccccccchhc
Confidence 3778888888887 667788775 9999999975
No 8
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-39 Score=315.72 Aligned_cols=281 Identities=19% Similarity=0.147 Sum_probs=219.7
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh----------cCCeEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK----------QSQRVI 104 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~----------~~~~vl 104 (391)
.+|+.+++++.+.+.+..+||+ |+++|.++||.+++|+|++++||||||||++|++|+++.+. .++++|
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~l 87 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRAL 87 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4788999999999999999997 99999999999999999999999999999999999988763 246899
Q ss_pred EEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccc
Q psy6275 105 YTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIH 173 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h 173 (391)
|++||++|+.|+++.+..+.. .+..++|+... ...++|+|+||+++.+++.+....+.+++++|+||||
T Consensus 88 il~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad 167 (423)
T PRK04837 88 IMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD 167 (423)
T ss_pred EECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH
Confidence 999999999999998888765 45667776542 3457999999999999998887888999999999999
Q ss_pred ccCccccchhHHHHHHHhCC--CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC--CcCceEeeccCCCCCeee
Q psy6275 174 YMRDKERGYVWEETLILLSD--NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR--PTPLQHYLFPNGGDGIHL 248 (391)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~ 248 (391)
++++.++...+..++..++. ..+.+++|||++.. ..+.. .....|..+...... ...+.+.+++...
T Consensus 168 ~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~---~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~----- 239 (423)
T PRK04837 168 RMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAF---EHMNNPEYVEVEPEQKTGHRIKEELFYPSN----- 239 (423)
T ss_pred HHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHH---HHCCCCEEEEEcCCCcCCCceeEEEEeCCH-----
Confidence 99998888888888888864 46789999999765 33332 223455444433222 1233333332110
Q ss_pred eecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhh
Q psy6275 249 IVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMA 328 (391)
Q Consensus 249 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~ 328 (391)
..+...+...+......++||||+++..|+.++..|.
T Consensus 240 -------------------------------------------~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~ 276 (423)
T PRK04837 240 -------------------------------------------EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLA 276 (423)
T ss_pred -------------------------------------------HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHH
Confidence 0123345555555556799999999999999999999
Q ss_pred ccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 329 KLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 329 ~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
..|+.+ ..+|..+.+.|++ .+.+|++|| +++||||+++.
T Consensus 277 ~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----------v~~rGiDip~v 324 (423)
T PRK04837 277 ADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----------VAARGLHIPAV 324 (423)
T ss_pred hCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----------hhhcCCCcccc
Confidence 877654 3678888888877 678888885 99999999854
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.8e-39 Score=316.70 Aligned_cols=279 Identities=20% Similarity=0.219 Sum_probs=220.4
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---------CCeEEEE
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---------SQRVIYT 106 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---------~~~vlvl 106 (391)
+|+.++|++.+.+.+.++||. ||++|.++|+.+++++|++++||||+|||++|++|+++.+.. ..++||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 578889999999999999997 999999999999999999999999999999999999988743 2479999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+||++|+.|+.+.++.+.. .+..++|+... ...++|+|+||+++++++......++++++||+||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 9999999999999998876 33446666543 346799999999999998888778899999999999999
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeecC
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~~ 252 (391)
+++++...+..++..++...|++++|||+++. ..+..++ ..++..+..... ....+.+++..++..
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~---~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-------- 230 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKL---LHNPLEIEVARRNTASEQVTQHVHFVDKK-------- 230 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHH---cCCCeEEEEecccccccceeEEEEEcCHH--------
Confidence 99988888888999899899999999999876 5555543 234444433221 222345554432210
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCC
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF 332 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~ 332 (391)
.+...+...+......++||||+++..|+.+++.|.+.|+
T Consensus 231 ----------------------------------------~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~ 270 (456)
T PRK10590 231 ----------------------------------------RKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGI 270 (456)
T ss_pred ----------------------------------------HHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCC
Confidence 0111233334445567899999999999999999998776
Q ss_pred CC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 333 NE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 333 ~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
.+ ..+|..+.+.|++ .+++|++|| ++++|||++.
T Consensus 271 ~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----------v~~rGiDip~ 313 (456)
T PRK10590 271 RSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----------IAARGLDIEE 313 (456)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----------HHhcCCCccc
Confidence 54 3678888888887 667888774 9999999863
No 10
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.2e-39 Score=321.98 Aligned_cols=280 Identities=16% Similarity=0.201 Sum_probs=218.9
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--------cCCeEEEEc
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--------QSQRVIYTT 107 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--------~~~~vlvl~ 107 (391)
+|..+++++.+.+.+...||+ ||++|.++||.+++|+|++++||||||||++|++|++..+. .++++||++
T Consensus 131 ~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~ 210 (545)
T PTZ00110 131 SFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLA 210 (545)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEEC
Confidence 688888999999999999997 99999999999999999999999999999999999887653 256899999
Q ss_pred ccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC
Q psy6275 108 PIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 108 P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
||++|+.|+.+.+..+.. .+..++|+... ...++|+|+||++|.+++.+....++++++||+||||+|+
T Consensus 211 PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~ml 290 (545)
T PTZ00110 211 PTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRML 290 (545)
T ss_pred ChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhh
Confidence 999999999999998876 34456666542 3357999999999999998887788999999999999999
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC---CcCceEeeccCCCCCeeeeecC
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR---PTPLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~---~~~i~~~~~~~~~~~~~~~v~~ 252 (391)
++++...+..++..+++..|++++|||++.. +.++..+. ...++.+...... ...+++.++.+...
T Consensus 291 d~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~--~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~-------- 360 (545)
T PTZ00110 291 DMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLC--KEEPVHVNVGSLDLTACHNIKQEVFVVEEH-------- 360 (545)
T ss_pred hcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHh--ccCCEEEEECCCccccCCCeeEEEEEEech--------
Confidence 9999999999999998899999999999876 55655432 1234444332221 12344444322110
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc--CCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER--NLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
.+...+...+... ...++||||+|++.|+.++..|+..
T Consensus 361 ----------------------------------------~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~ 400 (545)
T PTZ00110 361 ----------------------------------------EKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLD 400 (545)
T ss_pred ----------------------------------------hHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHc
Confidence 1112333333321 4569999999999999999999987
Q ss_pred CCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 331 NFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 331 g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
|+.+ .++|..+.+.|++ ...+|++| ++++||||+..
T Consensus 401 g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----------dv~~rGIDi~~ 445 (545)
T PTZ00110 401 GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----------DVASRGLDVKD 445 (545)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----------chhhcCCCccc
Confidence 7654 3678888888887 56777777 49999999964
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=8.9e-39 Score=322.63 Aligned_cols=281 Identities=17% Similarity=0.213 Sum_probs=223.9
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|..++|++.+.+.+.++||+ |+|+|.++|+.+++++++++.||||+|||++|.+|+++.+.. .+++||++||++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTre 85 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRE 85 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHH
Confidence 3588889999999999999997 999999999999999999999999999999999999887743 468999999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+++.+..+.+ .+..++|+... ...++|+|+||+++++++.+....+.++++||+||||+|++++
T Consensus 86 La~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~g 165 (629)
T PRK11634 86 LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG 165 (629)
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcc
Confidence 99999999887754 44456666543 3468999999999999998888889999999999999999998
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC--CcCceEeeccCCCCCeeeeecCchhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR--PTPLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+...+..++..++...|+++||||+|.. ..+... +..++..+...... ...+.+.++.+...
T Consensus 166 f~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~---~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~------------ 230 (629)
T PRK11634 166 FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRR---FMKEPQEVRIQSSVTTRPDISQSYWTVWGM------------ 230 (629)
T ss_pred cHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHH---HcCCCeEEEccCccccCCceEEEEEEechh------------
Confidence 8889999999999999999999999876 444443 33445444332221 12344444322210
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-- 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-- 334 (391)
.+...+...+......++||||+|+..|+.++..|...|+.+
T Consensus 231 ------------------------------------~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~ 274 (629)
T PRK11634 231 ------------------------------------RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAA 274 (629)
T ss_pred ------------------------------------hHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEE
Confidence 223355666666556789999999999999999999887664
Q ss_pred ------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 335 ------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 335 ------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
..+|..+++.|++ .+++|++|| ++++|||+++.
T Consensus 275 lhgd~~q~~R~~il~~Fr~G~~~ILVATd-----------v~arGIDip~V 314 (629)
T PRK11634 275 LNGDMNQALREQTLERLKDGRLDILIATD-----------VAARGLDVERI 314 (629)
T ss_pred eeCCCCHHHHHHHHHHHhCCCCCEEEEcc-----------hHhcCCCcccC
Confidence 3678888888877 678888875 99999999754
No 12
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.3e-39 Score=321.37 Aligned_cols=279 Identities=16% Similarity=0.156 Sum_probs=220.0
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----------CCeEEE
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----------SQRVIY 105 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----------~~~vlv 105 (391)
+|+.++|++.+.+.+.+.||+ ||++|.++||.+++|+|+++.||||||||++|++|+++.+.. ++++||
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLI 89 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALI 89 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEE
Confidence 588899999999999999997 999999999999999999999999999999999999987632 369999
Q ss_pred EcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcC-ccccCccceEEEeccc
Q psy6275 106 TTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRG-SEITREVGWVIFDEIH 173 (391)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~-~~~l~~~~~lViDE~h 173 (391)
++||++|+.|+++.+..+.. .+..++|+... ...++|+|+||++|++++.+. ...+..+++|||||||
T Consensus 90 l~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh 169 (572)
T PRK04537 90 LAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD 169 (572)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH
Confidence 99999999999999998876 45667787653 335789999999999988764 3567889999999999
Q ss_pred ccCccccchhHHHHHHHhCC--CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeee
Q psy6275 174 YMRDKERGYVWEETLILLSD--NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHL 248 (391)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~ 248 (391)
++++.++...+..++..++. ..|+++||||++.. ..+.. .....+..+..... ....+.+.++....
T Consensus 170 ~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~---~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~----- 241 (572)
T PRK04537 170 RMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAY---EHMNEPEKLVVETETITAARVRQRIYFPAD----- 241 (572)
T ss_pred HHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHH---HHhcCCcEEEeccccccccceeEEEEecCH-----
Confidence 99998888888888888875 68999999999765 33332 22334433332222 22234454443221
Q ss_pred eecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhh
Q psy6275 249 IVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMA 328 (391)
Q Consensus 249 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~ 328 (391)
.++...+...+......++||||+|++.|+.+++.|.
T Consensus 242 -------------------------------------------~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~ 278 (572)
T PRK04537 242 -------------------------------------------EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLE 278 (572)
T ss_pred -------------------------------------------HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHH
Confidence 0223355556666666799999999999999999999
Q ss_pred ccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 329 KLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 329 ~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+.|+.+ ..+|..+++.|++ ...+|++| +++++|||++.
T Consensus 279 ~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----------dv~arGIDip~ 325 (572)
T PRK04537 279 RHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----------DVAARGLHIDG 325 (572)
T ss_pred HcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----------hhhhcCCCccC
Confidence 887664 3678888888887 66778877 49999999984
No 13
>KOG0343|consensus
Probab=100.00 E-value=1.8e-39 Score=303.92 Aligned_cols=283 Identities=20% Similarity=0.195 Sum_probs=237.7
Q ss_pred CCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEE
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYT 106 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl 106 (391)
+..|..++++....+.|++.+|. +|.+|+++||..+.|++++..|.||||||++|++|+++.+-+ |--+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 34789999999999999999996 999999999999999999999999999999999999998843 5579999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCcc-ccCccceEEEeccccc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYM 175 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~ 175 (391)
.|||+|+.|++..+.+.++ ..|++.|+.... .+.+|+||||++|++++..... .-.++.++|+||||++
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~ 227 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRM 227 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHH
Confidence 9999999999999999987 678888887753 3679999999999999998764 4568999999999999
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeee----CCCCcCceEeeccCCCCCeeeee
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYT----DYRPTPLQHYLFPNGGDGIHLIV 250 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~----~~~~~~i~~~~~~~~~~~~~~~v 250 (391)
++++|...++.|+..+|..+|.++||||.... .++++. ...+|.++-.- ...|..++|+++.++..
T Consensus 228 LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRL---sL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~------ 298 (758)
T KOG0343|consen 228 LDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARL---SLKDPVYVSVHENAVAATPSNLQQSYVIVPLE------ 298 (758)
T ss_pred HHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHh---hcCCCcEEEEeccccccChhhhhheEEEEehh------
Confidence 99999999999999999999999999998876 667664 34566555433 34566788888876532
Q ss_pred cCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 251 DDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
+++..|...+..+...++|||++|.+++..+++.++++
T Consensus 299 ------------------------------------------~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl 336 (758)
T KOG0343|consen 299 ------------------------------------------DKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL 336 (758)
T ss_pred ------------------------------------------hHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc
Confidence 55678888888888889999999999999999999986
Q ss_pred ----------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 331 ----------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 331 ----------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
|-..+..|-.+...|-. ...+|.+| |+.+||+||++++
T Consensus 337 rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~T-----------Dv~aRGLDFpaVd 385 (758)
T KOG0343|consen 337 RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCT-----------DVAARGLDFPAVD 385 (758)
T ss_pred CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEee-----------hhhhccCCCcccc
Confidence 22234566666666666 44566666 5999999998765
No 14
>KOG0338|consensus
Probab=100.00 E-value=1.4e-39 Score=302.25 Aligned_cols=282 Identities=19% Similarity=0.238 Sum_probs=228.0
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc------CCeEEEEcc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVIYTTP 108 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~------~~~vlvl~P 108 (391)
.+|..++|+..+++.+..+||. |||+|.++||..+-|+++..+|.||||||.+|.+|++..+-- ..|||||+|
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 3788999999999999999997 999999999999999999999999999999999999998732 359999999
Q ss_pred cHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccC
Q psy6275 109 IKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMR 176 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~ 176 (391)
||+|+.|++...+.+.. .+++..|+..+ ...++|+|+||+++.+++.+.+. .+.++.++|+||||+|+
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence 99999999999888876 67888898875 45799999999999999988754 68899999999999999
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCc--CceEeeccCCCCCeeeeecCc
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPT--PLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~--~i~~~~~~~~~~~~~~~v~~~ 253 (391)
+.+|...+..|+...+.++|.++||||+... ++++. .....|+.++....... .+.+-++.+-.++
T Consensus 341 eegFademnEii~lcpk~RQTmLFSATMteeVkdL~s---lSL~kPvrifvd~~~~~a~~LtQEFiRIR~~r-------- 409 (691)
T KOG0338|consen 341 EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLAS---LSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKR-------- 409 (691)
T ss_pred HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHH---hhcCCCeEEEeCCccccchhhhHHHheecccc--------
Confidence 9999999999999999999999999999876 66666 34567888887765433 3444444221110
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN 333 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~ 333 (391)
.+-+ +..+..++..+- ...+|||+.|++.|..+.-.|--+|+.
T Consensus 410 -------------------------------e~dR---ea~l~~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl~ 452 (691)
T KOG0338|consen 410 -------------------------------EGDR---EAMLASLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGLK 452 (691)
T ss_pred -------------------------------cccc---HHHHHHHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhch
Confidence 0000 011222322221 357999999999999999999888777
Q ss_pred Ch--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc
Q psy6275 334 ET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 334 ~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~ 376 (391)
+. ..|-...+.|++ .+++|++|| +.+||+||.
T Consensus 453 agElHGsLtQ~QRlesL~kFk~~eidvLiaTD-----------vAsRGLDI~ 493 (691)
T KOG0338|consen 453 AGELHGSLTQEQRLESLEKFKKEEIDVLIATD-----------VASRGLDIE 493 (691)
T ss_pred hhhhcccccHHHHHHHHHHHHhccCCEEEEec-----------hhhccCCcc
Confidence 65 456666777777 789999885 999999984
No 15
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.8e-38 Score=310.34 Aligned_cols=281 Identities=21% Similarity=0.215 Sum_probs=223.0
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEEcc
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYTTP 108 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl~P 108 (391)
+|+.+++++.+.+.+.+.||. |+++|.++++.+.++++++++||||+|||++|++|+++.+.. +.++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 578899999999999999997 999999999999999999999999999999999999987732 468999999
Q ss_pred cHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 109 IKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
|++|+.|+++.+..+.. .+..++|+... ...++|+|+||+++++++......++++++||+||||++++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999888866 56678887653 34678999999999999988777788999999999999999
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCC--cCceEeeccCCCCCeeeeecCc
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRP--TPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~--~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
+++...+..+...++...|+++||||++.. .++..++ ...+..+....... ..+.++++.++..
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~i~~~~~~~~~~--------- 229 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERL---LNDPVEVEAEPSRRERKKIHQWYYRADDL--------- 229 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHH---ccCCEEEEecCCcccccCceEEEEEeCCH---------
Confidence 999999999988888889999999999753 5555554 33454443322221 2344444432210
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN 333 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~ 333 (391)
..+...+...+......++||||+++.+|+.++..|...|+.
T Consensus 230 --------------------------------------~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~ 271 (434)
T PRK11192 230 --------------------------------------EHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGIN 271 (434)
T ss_pred --------------------------------------HHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCC
Confidence 012234444454445679999999999999999999987765
Q ss_pred C--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 334 E--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 334 ~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+ ..+|..+.+.|++ .+.+|++|| ++++|||+++.
T Consensus 272 ~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd-----------~~~~GiDip~v 314 (434)
T PRK11192 272 CCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD-----------VAARGIDIDDV 314 (434)
T ss_pred EEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc-----------ccccCccCCCC
Confidence 4 3678888888877 667777774 99999999754
No 16
>KOG0328|consensus
Probab=100.00 E-value=6.8e-40 Score=284.07 Aligned_cols=291 Identities=18% Similarity=0.252 Sum_probs=241.2
Q ss_pred eeccCCCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEE
Q psy6275 30 HEVALPPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIY 105 (391)
Q Consensus 30 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlv 105 (391)
+.+...++|+.++|.+++++.+..+||+ |..+|+.|++.+.+|+|++..|..|+|||.+|.+.+++.+. +..++++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~li 100 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALI 100 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEE
Confidence 3445567899999999999999999998 99999999999999999999999999999999888888764 3468999
Q ss_pred EcccHHHHHHHHHHHHHhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc
Q psy6275 106 TTPIKALSNQKYREFEEQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~ 174 (391)
+.|||+|+.|+.+.+..+.. ++..+.|+.... ...+++.+||+++++++.++...-+.++++|+||||.
T Consensus 101 lsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 101 LSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE 180 (400)
T ss_pred ecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHH
Confidence 99999999999999999887 344466766643 3578999999999999999888888999999999999
Q ss_pred cCccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCc--CceEeeccCCCCCeeeeecC
Q psy6275 175 MRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPT--PLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~--~i~~~~~~~~~~~~~~~v~~ 252 (391)
|++.+++..+..+.+.+|++.|++++|||+|.. +.+....++.+|+.+.......+ .+++|++.+...+
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~e--ilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Ee------- 251 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHE--ILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEE------- 251 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHH--HHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhh-------
Confidence 999999999999999999999999999999876 33444456778888877655443 5889988766432
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCC
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF 332 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~ 332 (391)
| +...|..++..-.-.+.+|||||++.++.|.+.|++..+
T Consensus 252 --w--------------------------------------KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nf 291 (400)
T KOG0328|consen 252 --W--------------------------------------KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF 291 (400)
T ss_pred --h--------------------------------------hHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCc
Confidence 1 123445555555567899999999999999999998655
Q ss_pred C--------ChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 333 N--------ETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 333 ~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
. ..++|+.++..|+. ..++|++|| +-+||||+..+++
T Consensus 292 tVssmHGDm~qkERd~im~dFRsg~SrvLitTD-----------VwaRGiDv~qVsl 337 (400)
T KOG0328|consen 292 TVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD-----------VWARGIDVQQVSL 337 (400)
T ss_pred eeeeccCCcchhHHHHHHHHhhcCCceEEEEec-----------hhhccCCcceeEE
Confidence 4 34889999999988 456777774 8999999987665
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.3e-37 Score=310.36 Aligned_cols=279 Identities=19% Similarity=0.207 Sum_probs=214.3
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh----------cCCeEEE
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK----------QSQRVIY 105 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~----------~~~~vlv 105 (391)
+|..+++++.+...+...||. |||+|.++|+.+++|+|++++||||||||++|++|++..+. .++++||
T Consensus 122 ~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLI 201 (518)
T PLN00206 122 SFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMV 201 (518)
T ss_pred CHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEE
Confidence 677788999999999999997 99999999999999999999999999999999999987652 3578999
Q ss_pred EcccHHHHHHHHHHHHHhcc----cceeeeCCcc-------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc
Q psy6275 106 TTPIKALSNQKYREFEEQFK----DVGLITGDVT-------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~-------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~ 174 (391)
++||++|+.|+.+.++.+.. .+..+.|+.. .....+|+|+||+++.+++.+....++++++||+||||+
T Consensus 202 L~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ 281 (518)
T PLN00206 202 LTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDC 281 (518)
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHH
Confidence 99999999999999888765 2333445443 234579999999999999988888899999999999999
Q ss_pred cCccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC-CC-cCceEeeccCCCCCeeeeec
Q psy6275 175 MRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY-RP-TPLQHYLFPNGGDGIHLIVD 251 (391)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~-~~-~~i~~~~~~~~~~~~~~~v~ 251 (391)
|+++++...+..++..++ +.|++++|||+++. +.++.++. .++..+..... .+ ..+.+.++.+...
T Consensus 282 ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~---~~~~~i~~~~~~~~~~~v~q~~~~~~~~------- 350 (518)
T PLN00206 282 MLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLA---KDIILISIGNPNRPNKAVKQLAIWVETK------- 350 (518)
T ss_pred HhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhC---CCCEEEEeCCCCCCCcceeEEEEeccch-------
Confidence 999888888888887775 58999999999876 55666543 34444332221 11 2344444433211
Q ss_pred CchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc--CCCcEEEEEcchhhHHHHHHHhhc
Q psy6275 252 DNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER--NLAPVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~iIF~~t~~~~~~la~~L~~ 329 (391)
++...+.+.+... ...++||||+|+..|+.++..|..
T Consensus 351 -----------------------------------------~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~ 389 (518)
T PLN00206 351 -----------------------------------------QKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV 389 (518)
T ss_pred -----------------------------------------hHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh
Confidence 1122344444332 135899999999999999999975
Q ss_pred -cCCC--------ChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 330 -LNFN--------ETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 330 -~g~~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.|+. ..++|..+.+.|++ ...+|++|| +++||||++++
T Consensus 390 ~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----------vl~rGiDip~v 437 (518)
T PLN00206 390 VTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----------VLGRGVDLLRV 437 (518)
T ss_pred ccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----------HhhccCCcccC
Confidence 3443 34778888888887 667777774 99999999764
No 18
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.1e-37 Score=319.89 Aligned_cols=303 Identities=23% Similarity=0.379 Sum_probs=224.2
Q ss_pred CcccccccccCCCCccCCCC-CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q psy6275 38 LEYQPLAQSKEKPAREYPFV-LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQ 115 (391)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q 115 (391)
|+.+++++.+...+...||. |+|+|.+|++. +.+++|++++||||||||++|.+++++.+.++++++|++|+++|+.|
T Consensus 3 ~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q 82 (737)
T PRK02362 3 IAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASE 82 (737)
T ss_pred hhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHH
Confidence 56778899999999999997 99999999997 78899999999999999999999999998889999999999999999
Q ss_pred HHHHHHHhcc---cceeeeCCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH
Q psy6275 116 KYREFEEQFK---DVGLITGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 116 ~~~~~~~~~~---~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
.+..|+.+.. +++.++|+...+ .+++|+|+||+++..++.+....+++++++|+||+|.+.+.+++..++.++
T Consensus 83 ~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il 162 (737)
T PRK02362 83 KFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTL 162 (737)
T ss_pred HHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHH
Confidence 9999998632 677888877644 357999999999999888766678899999999999999888999999887
Q ss_pred HHh---CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHH
Q psy6275 189 ILL---SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMN 265 (391)
Q Consensus 189 ~~~---~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 265 (391)
..+ ..+.|++++|||+++..++++|++.. .+....+|.++...++..+. +.. ... ..
T Consensus 163 ~rl~~~~~~~qii~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~--~~~-------~~~-----~~ 222 (737)
T PRK02362 163 AKLRRLNPDLQVVALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGA--IHF-------DDS-----QR 222 (737)
T ss_pred HHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCe--ecc-------ccc-----cc
Confidence 665 46799999999999999999999742 24556778777765543211 100 000 00
Q ss_pred HhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC--ChHHHHHHHH
Q psy6275 266 VLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN--ETEEVKLVDD 343 (391)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~--~~~~r~~~~~ 343 (391)
.+. ..........+.+.+. .++++||||+|+++|+.+|..|.+.... ...++....+
T Consensus 223 ~~~-------------------~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 281 (737)
T PRK02362 223 EVE-------------------VPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAE 281 (737)
T ss_pred cCC-------------------CccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 000 0000112223333333 3469999999999999999999865321 1122222222
Q ss_pred HHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 344 VFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 344 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
..+ .+.....++ ....+.+++..||++|||||+..+|+
T Consensus 282 ~~~-~l~~~~~~~----~~~~L~~~l~~gva~hHagl~~~eR~ 319 (737)
T PRK02362 282 LAE-EIREVSDTE----TSKDLADCVAKGAAFHHAGLSREHRE 319 (737)
T ss_pred HHH-HHHhccCcc----ccHHHHHHHHhCEEeecCCCCHHHHH
Confidence 211 111111111 23567889999999999999998875
No 19
>KOG0342|consensus
Probab=100.00 E-value=7.5e-38 Score=290.22 Aligned_cols=283 Identities=20% Similarity=0.227 Sum_probs=231.7
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-------cCCeEEEEcc
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-------QSQRVIYTTP 108 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-------~~~~vlvl~P 108 (391)
.|+...|++...+.++++||+ +|++|+..++.++.|+++++.|.||+|||++|++|+++++. ++..++|++|
T Consensus 83 ~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~P 162 (543)
T KOG0342|consen 83 RFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICP 162 (543)
T ss_pred HhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecc
Confidence 467788999999999999998 99999999999999999999999999999999999999873 3568999999
Q ss_pred cHHHHHHHHHHHHHhcc-----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCcc-ccCccceEEEeccccc
Q psy6275 109 IKALSNQKYREFEEQFK-----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYM 175 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~-----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~ 175 (391)
||+|+.|++.+.+++.. .++++.|+... ...++|+|+|||+|++++.+... ..+.++++|+||||++
T Consensus 163 TRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrl 242 (543)
T KOG0342|consen 163 TRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRL 242 (543)
T ss_pred cHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhh
Confidence 99999999999998876 57778887764 23689999999999999998665 4567889999999999
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCc----CceEeeccCCCCCeeeee
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPT----PLQHYLFPNGGDGIHLIV 250 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~----~i~~~~~~~~~~~~~~~v 250 (391)
++.+|...++.|+..++..+|.++||||.+.. ++++.. .+..++.++-..+.... .++|.++.++.+
T Consensus 243 Ld~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~--~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~------ 314 (543)
T KOG0342|consen 243 LDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARG--ALKRDPVFVNVDDGGERETHERLEQGYVVAPSD------ 314 (543)
T ss_pred hhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHH--hhcCCceEeecCCCCCcchhhcccceEEecccc------
Confidence 99999999999999999999999999999877 777765 23446666655544322 466755544432
Q ss_pred cCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCC-CcEEEEEcchhhHHHHHHHhhc
Q psy6275 251 DDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNL-APVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~iIF~~t~~~~~~la~~L~~ 329 (391)
..+..++..++++.. +++||||+|...+..+++.|+.
T Consensus 315 ------------------------------------------~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~ 352 (543)
T KOG0342|consen 315 ------------------------------------------SRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNY 352 (543)
T ss_pred ------------------------------------------chHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhh
Confidence 234567777777654 8999999999999999999998
Q ss_pred cCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 330 LNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 330 ~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
..+++- ..|..+...|.+ ...+|++| |+.|||+||+++..
T Consensus 353 ~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cT-----------DVaARGlD~P~V~~ 401 (543)
T KOG0342|consen 353 IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCT-----------DVAARGLDIPDVDW 401 (543)
T ss_pred cCCchhhhhcCCcccccchHHHHHhhcccceEEec-----------chhhccCCCCCceE
Confidence 766653 557777777777 44555555 59999999998653
No 20
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.4e-37 Score=304.63 Aligned_cols=280 Identities=18% Similarity=0.193 Sum_probs=217.9
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----------CCeEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----------SQRVI 104 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----------~~~vl 104 (391)
..|..+.+++.+...+.+.||. |+++|.++|+.+.+|+|+++++|||||||++|++|+++.+.. ..++|
T Consensus 87 ~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aL 166 (475)
T PRK01297 87 TRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRAL 166 (475)
T ss_pred CCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEE
Confidence 4678889999999999999997 999999999999999999999999999999999999987743 46899
Q ss_pred EEcccHHHHHHHHHHHHHhcc----cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecc
Q psy6275 105 YTTPIKALSNQKYREFEEQFK----DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEI 172 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~ 172 (391)
|++||++|+.|+++.++.+.+ .+..++|+... ...++|+|+||++|+.++.+....++++++||+||+
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEa 246 (475)
T PRK01297 167 IIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEA 246 (475)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechH
Confidence 999999999999999998865 45556776442 235799999999999988888888999999999999
Q ss_pred cccCccccchhHHHHHHHhCC--CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC--CcCceEeeccCCCCCee
Q psy6275 173 HYMRDKERGYVWEETLILLSD--NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR--PTPLQHYLFPNGGDGIH 247 (391)
Q Consensus 173 h~~~~~~~~~~~~~i~~~~~~--~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~ 247 (391)
|.+.+.++...+..++...+. ..|++++|||++.. ..+...+ ...+..+...... ...++++++.+...
T Consensus 247 h~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--- 320 (475)
T PRK01297 247 DRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQW---TTDPAIVEIEPENVASDTVEQHVYAVAGS--- 320 (475)
T ss_pred HHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHh---ccCCEEEEeccCcCCCCcccEEEEEecch---
Confidence 999988887788888887753 57999999998765 4444432 2344443222211 22344444432211
Q ss_pred eeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHh
Q psy6275 248 LIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQM 327 (391)
Q Consensus 248 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L 327 (391)
++...+...+......++||||++++.|+.+++.|
T Consensus 321 ---------------------------------------------~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L 355 (475)
T PRK01297 321 ---------------------------------------------DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERL 355 (475)
T ss_pred ---------------------------------------------hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHH
Confidence 11224445555555679999999999999999999
Q ss_pred hccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 328 AKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 328 ~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
...|+.+ .++|..+.+.|++ .+.+|++|+ ++++|||++.
T Consensus 356 ~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----------~l~~GIDi~~ 403 (475)
T PRK01297 356 VKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----------VAGRGIHIDG 403 (475)
T ss_pred HHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----------ccccCCcccC
Confidence 8776543 4778888888876 667778774 9999999974
No 21
>KOG0345|consensus
Probab=100.00 E-value=2e-37 Score=285.72 Aligned_cols=278 Identities=19% Similarity=0.213 Sum_probs=225.5
Q ss_pred ccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc------C--CeEEEEcccHHH
Q psy6275 42 PLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------S--QRVIYTTPIKAL 112 (391)
Q Consensus 42 ~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~------~--~~vlvl~P~~~L 112 (391)
+|.+.+...+...||+ +||+|..+||.+++++++++-|+||||||++|++|++..+-+ + .-+||++|||||
T Consensus 12 ~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTREL 91 (567)
T KOG0345|consen 12 PLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTREL 91 (567)
T ss_pred CccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHH
Confidence 4558899999999998 999999999999999999999999999999999999998821 2 268999999999
Q ss_pred HHHHHHHHHHhcc-----cceeeeCCcccC--------CCCCEEEEcHHHHHHHHhcCcc--ccCccceEEEecccccCc
Q psy6275 113 SNQKYREFEEQFK-----DVGLITGDVTIN--------PSSSCLIMTTEILRNMLYRGSE--ITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 113 ~~q~~~~~~~~~~-----~v~~~~g~~~~~--------~~~~I~v~Tp~~l~~~l~~~~~--~l~~~~~lViDE~h~~~~ 177 (391)
+.|+.+....+.. ++.++.|+..+. ..++|+|+|||+|.+++.+... .+++++++|+||||++++
T Consensus 92 a~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 92 ARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 9999999888876 367788886653 3678999999999999987544 355999999999999999
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCC----CcCceEeeccCCCCCeeeeecCc
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR----PTPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~----~~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
++|...++.|++.+|+.++.-+||||...+ +.+.......+|+.+.+.... |..+..++..+..
T Consensus 172 mgFe~~~n~ILs~LPKQRRTGLFSATq~~~--v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a---------- 239 (567)
T KOG0345|consen 172 MGFEASVNTILSFLPKQRRTGLFSATQTQE--VEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEA---------- 239 (567)
T ss_pred ccHHHHHHHHHHhcccccccccccchhhHH--HHHHHHhhccCceeeeecccccccCchhhcceeeEecH----------
Confidence 999999999999999999999999998765 333333556778777655443 4446655554432
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc---
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL--- 330 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~--- 330 (391)
+.+...++.++.....+++|||.+|...++.....|...
T Consensus 240 --------------------------------------~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~ 281 (567)
T KOG0345|consen 240 --------------------------------------DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKK 281 (567)
T ss_pred --------------------------------------HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCC
Confidence 145678999999988899999999999999999999765
Q ss_pred -------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 331 -------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 331 -------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
|-.....|..+.+.|.+ .-.+|.+| |+++|||||+..++
T Consensus 282 ~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T-----------DVaARGlDip~iD~ 328 (567)
T KOG0345|consen 282 REIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT-----------DVAARGLDIPGIDL 328 (567)
T ss_pred CcEEEecchhcchhHHHHHHHHHhccCceEEee-----------hhhhccCCCCCceE
Confidence 33334668888888877 44555555 69999999975543
No 22
>KOG0326|consensus
Probab=100.00 E-value=1.2e-38 Score=280.63 Aligned_cols=282 Identities=18% Similarity=0.211 Sum_probs=230.9
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKAL 112 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L 112 (391)
.|+.+.|.++++..+.+.||+ |.|+|.++||.++.|++++..|..|+|||.+|++|+++.+.. .-+.+|++|||+|
T Consensus 86 efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrel 165 (459)
T KOG0326|consen 86 EFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTREL 165 (459)
T ss_pred cHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchh
Confidence 577788999999999999998 999999999999999999999999999999999999999854 4689999999999
Q ss_pred HHHHHHHHHHhcc----cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 113 SNQKYREFEEQFK----DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 113 ~~q~~~~~~~~~~----~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
+.|+.+...++.+ .+.+.+|++.... ..+++|+||++++++..++...+++..++|+||||.+++..|.
T Consensus 166 ALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~ 245 (459)
T KOG0326|consen 166 ALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQ 245 (459)
T ss_pred hHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhh
Confidence 9999998888887 4556788877543 4689999999999999999989999999999999999999999
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEe-eeCCCCcCceEeeccCCCCCeeeeecCchhhhhch
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVV-YTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNY 260 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~-~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (391)
..++.++..+|+++|++++|||+|-. +..++...+.+|..+- -....+..+.+|+-++...
T Consensus 246 ~~~e~li~~lP~~rQillySATFP~t--Vk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~---------------- 307 (459)
T KOG0326|consen 246 PIVEKLISFLPKERQILLYSATFPLT--VKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEER---------------- 307 (459)
T ss_pred hHHHHHHHhCCccceeeEEecccchh--HHHHHHHhccCcceeehhhhhhhcchhhheeeechh----------------
Confidence 99999999999999999999999977 3444446666776553 3344556778777655422
Q ss_pred HHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh-----
Q psy6275 261 QVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----- 335 (391)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----- 335 (391)
.++.-|-.++.+-.-.+.||||||.+.+|.+|+.+.+.|+.|=
T Consensus 308 --------------------------------qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHak 355 (459)
T KOG0326|consen 308 --------------------------------QKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAK 355 (459)
T ss_pred --------------------------------hhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHH
Confidence 1222233333444456899999999999999999999999874
Q ss_pred ---HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 336 ---EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 336 ---~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+.|..+.+.|++ ..+.|+++ |++.||||+..++
T Consensus 356 M~Q~hRNrVFHdFr~G~crnLVct-----------DL~TRGIDiqavN 392 (459)
T KOG0326|consen 356 MAQEHRNRVFHDFRNGKCRNLVCT-----------DLFTRGIDIQAVN 392 (459)
T ss_pred HHHhhhhhhhhhhhccccceeeeh-----------hhhhcccccceee
Confidence 556666666666 44555555 6999999997543
No 23
>KOG0333|consensus
Probab=100.00 E-value=2.4e-37 Score=288.28 Aligned_cols=284 Identities=20% Similarity=0.209 Sum_probs=239.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc------------CCe
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------------SQR 102 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~------------~~~ 102 (391)
.+|.+.+++.++++.+...||. |+|+|.++||..+.++|+|..|.||||||.+|++|++.++.. ++.
T Consensus 245 rnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpy 324 (673)
T KOG0333|consen 245 RNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPY 324 (673)
T ss_pred cChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCce
Confidence 4788899999999999999997 999999999999999999999999999999999999888742 789
Q ss_pred EEEEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEec
Q psy6275 103 VIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDE 171 (391)
Q Consensus 103 vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE 171 (391)
.++++|||+|+.|+..+-.++.. ++..+.|+... ...+.|+|+||++|.+.+.+...-++...++|+||
T Consensus 325 aiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvlde 404 (673)
T KOG0333|consen 325 AIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDE 404 (673)
T ss_pred eeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccc
Confidence 99999999999999999888876 34345565543 44689999999999999888877788999999999
Q ss_pred ccccCccccchhHHHHHHHhCC-----------------------C--CcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 172 IHYMRDKERGYVWEETLILLSD-----------------------N--VRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 172 ~h~~~~~~~~~~~~~i~~~~~~-----------------------~--~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
||+|.|++|.+.+..++..+|. + .|.++||||++.. ..++. .++.+|+.+.
T Consensus 405 adrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar---~ylr~pv~vt 481 (673)
T KOG0333|consen 405 ADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLAR---SYLRRPVVVT 481 (673)
T ss_pred hhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHH---HHhhCCeEEE
Confidence 9999999999999999988741 1 7899999999887 55555 5667888886
Q ss_pred eeC-CCCc-CceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHH
Q psy6275 226 YTD-YRPT-PLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIM 303 (391)
Q Consensus 226 ~~~-~~~~-~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 303 (391)
... +++. .++|.++.+..+ ++...|.+.+.
T Consensus 482 ig~~gk~~~rveQ~v~m~~ed------------------------------------------------~k~kkL~eil~ 513 (673)
T KOG0333|consen 482 IGSAGKPTPRVEQKVEMVSED------------------------------------------------EKRKKLIEILE 513 (673)
T ss_pred eccCCCCccchheEEEEecch------------------------------------------------HHHHHHHHHHH
Confidence 665 4444 578888765533 34567888888
Q ss_pred HcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhh
Q psy6275 304 ERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIG 374 (391)
Q Consensus 304 ~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~ 374 (391)
.....++|||+|+++.|+.+|+.|.+.|+.+ .++|....+.|+. ..++|++|| +.+||||
T Consensus 514 ~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----------vAgRGID 582 (673)
T KOG0333|consen 514 SNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----------VAGRGID 582 (673)
T ss_pred hCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----------ccccCCC
Confidence 8767799999999999999999999988776 3788888888888 668888885 9999999
Q ss_pred hccCCCC
Q psy6275 375 IHHGVKP 381 (391)
Q Consensus 375 ~~h~~~~ 381 (391)
|+.++|-
T Consensus 583 IpnVSlV 589 (673)
T KOG0333|consen 583 IPNVSLV 589 (673)
T ss_pred CCcccee
Confidence 9987763
No 24
>KOG0346|consensus
Probab=100.00 E-value=3e-37 Score=282.17 Aligned_cols=292 Identities=16% Similarity=0.208 Sum_probs=229.1
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVIY 105 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vlv 105 (391)
.+|..++|++.+++.+.++||+ ||-+|+.|||.+++|+|++..|.||||||.+|++|+++.+- .+..++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 5799999999999999999998 99999999999999999999999999999999999999772 3678999
Q ss_pred EcccHHHHHHHHHHHHHhcccce------eeeCCcc-------cCCCCCEEEEcHHHHHHHHhcCc-cccCccceEEEec
Q psy6275 106 TTPIKALSNQKYREFEEQFKDVG------LITGDVT-------INPSSSCLIMTTEILRNMLYRGS-EITREVGWVIFDE 171 (391)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~~v~------~~~g~~~-------~~~~~~I~v~Tp~~l~~~l~~~~-~~l~~~~~lViDE 171 (391)
++||++|+.|++..+.++...+. -+..++. .-..++|+|+||++++.++..+. ..+..+.++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999888765211 1222211 23468999999999999998877 6788999999999
Q ss_pred ccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC-C--cCceEeeccCCCCCee
Q psy6275 172 IHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR-P--TPLQHYLFPNGGDGIH 247 (391)
Q Consensus 172 ~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~-~--~~i~~~~~~~~~~~~~ 247 (391)
||.++.-++...+..+...+|+..|.++||||+.+. ..+.. .+..+|+..-..+.. + ..+.|+.+.+...
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKk---L~l~nPviLkl~e~el~~~dqL~Qy~v~cse~--- 252 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKK---LFLHNPVILKLTEGELPNPDQLTQYQVKCSEE--- 252 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHH---HhccCCeEEEeccccCCCcccceEEEEEeccc---
Confidence 999999899999999999999999999999999766 44444 345677766444333 2 3577777766532
Q ss_pred eeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc-CCCcEEEEEcchhhHHHHHHH
Q psy6275 248 LIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER-NLAPVIVFSFSKKDCEIYAMQ 326 (391)
Q Consensus 248 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIF~~t~~~~~~la~~ 326 (391)
++...++.+++-+ =.+++|||+||.+.|-.|.-.
T Consensus 253 ---------------------------------------------DKflllyallKL~LI~gKsliFVNtIdr~YrLkLf 287 (569)
T KOG0346|consen 253 ---------------------------------------------DKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLF 287 (569)
T ss_pred ---------------------------------------------hhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHH
Confidence 2222222222221 135899999999999999999
Q ss_pred hhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccC------------------------cchHhHHHHHHhhh
Q psy6275 327 MAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKL------------------------PQIENILPLLRRGI 373 (391)
Q Consensus 327 L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~------------------------~~~~~~~~~l~~GI 373 (391)
|...|+.+- +.|-.+.+.|+. ..+++++||... .+-.-...-++|||
T Consensus 288 LeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGI 367 (569)
T KOG0346|consen 288 LEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGI 367 (569)
T ss_pred HHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccc
Confidence 999888753 678888999988 558888888110 00113345789999
Q ss_pred hhccC
Q psy6275 374 GIHHG 378 (391)
Q Consensus 374 ~~~h~ 378 (391)
||||+
T Consensus 368 DF~~V 372 (569)
T KOG0346|consen 368 DFHHV 372 (569)
T ss_pred cchhe
Confidence 99986
No 25
>KOG0335|consensus
Probab=100.00 E-value=5.2e-37 Score=288.87 Aligned_cols=281 Identities=18% Similarity=0.222 Sum_probs=223.0
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-------------CCe
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------------SQR 102 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-------------~~~ 102 (391)
+|+...+.+.+..+++..+|. |||+|+.+||.+..|++++++|+||||||.+|++|++..+.. .++
T Consensus 75 ~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~ 154 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPR 154 (482)
T ss_pred cccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCc
Confidence 778888888999999999997 999999999999999999999999999999999999988732 379
Q ss_pred EEEEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEec
Q psy6275 103 VIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDE 171 (391)
Q Consensus 103 vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE 171 (391)
++|++|||+|+.|++.+.+++.. +....+|+... ..+++|+|+||++|.+++..+...+++++++|+||
T Consensus 155 ~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDE 234 (482)
T KOG0335|consen 155 ALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDE 234 (482)
T ss_pred eEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecc
Confidence 99999999999999999999876 45556776553 34689999999999999999999999999999999
Q ss_pred ccccCc-cccchhHHHHHHHhC----CCCcEEEEcccCCCh-HHHHHHhccccCCCee--EeeeCCCCcCceEeeccCCC
Q psy6275 172 IHYMRD-KERGYVWEETLILLS----DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCH--VVYTDYRPTPLQHYLFPNGG 243 (391)
Q Consensus 172 ~h~~~~-~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~--v~~~~~~~~~i~~~~~~~~~ 243 (391)
||.|+| ++|++.++.++.... ...|.++||||+|.. ..++..+-. ...+. +-........+.+.+.++..
T Consensus 235 ADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~--~~yi~laV~rvg~~~~ni~q~i~~V~~ 312 (482)
T KOG0335|consen 235 ADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLK--DNYIFLAVGRVGSTSENITQKILFVNE 312 (482)
T ss_pred hHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhh--ccceEEEEeeeccccccceeEeeeecc
Confidence 999999 999999999998764 379999999999876 444443321 11222 22223344567777766553
Q ss_pred CCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcC---------CCcEEEEE
Q psy6275 244 DGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERN---------LAPVIVFS 314 (391)
Q Consensus 244 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---------~~~~iIF~ 314 (391)
. ++...|+.++.... .++++|||
T Consensus 313 ~------------------------------------------------~kr~~Lldll~~~~~~~~~~~~~~e~tlvFv 344 (482)
T KOG0335|consen 313 M------------------------------------------------EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFV 344 (482)
T ss_pred h------------------------------------------------hhHHHHHHHhhcccCCcccCCcccceEEEEe
Confidence 2 22234444444321 23899999
Q ss_pred cchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 315 FSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 315 ~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.|++.|.+++..|...+++.. .+|......|++ ...++++| ++.+||+||.++
T Consensus 345 Et~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT-----------~VaaRGlDi~~V 406 (482)
T KOG0335|consen 345 ETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVAT-----------NVAARGLDIPNV 406 (482)
T ss_pred eccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEe-----------hhhhcCCCCCCC
Confidence 999999999999999988875 456666666666 45555555 699999999864
No 26
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.3e-36 Score=293.12 Aligned_cols=282 Identities=15% Similarity=0.219 Sum_probs=216.5
Q ss_pred CCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccH
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIK 110 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~ 110 (391)
..+|+.+++++.+.+.+..+||+ |+++|.++++.+.+++++++.||||||||++|++|+++.+. .+.++||++|++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 36788999999999999999997 99999999999999999999999999999999999998875 357899999999
Q ss_pred HHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 111 ALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 111 ~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
+|+.|+.+.+..... .+..+.|+... ....+|+|+||+++...+.+....+++++++|+||+|++.+.+
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~ 186 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG 186 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc
Confidence 999999998888775 23345555432 2347899999999999888877788999999999999998887
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeecCchhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+...+..++..++.+.|++++|||+++. ..+.. .+...+..+..... ....+.++++..+.. .
T Consensus 187 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-- 252 (401)
T PTZ00424 187 FKGQIYDVFKKLPPDVQVALFSATMPNEILELTT---KFMRDPKRILVKKDELTLEGIRQFYVAVEKE---------E-- 252 (401)
T ss_pred hHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHH---HHcCCCEEEEeCCCCcccCCceEEEEecChH---------H--
Confidence 7777888888888899999999999875 33332 23334444332221 122344444322210 0
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-- 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-- 334 (391)
.....+...+......++||||+|+++|+.+++.|...++.+
T Consensus 253 ------------------------------------~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~ 296 (401)
T PTZ00424 253 ------------------------------------WKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSC 296 (401)
T ss_pred ------------------------------------HHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEE
Confidence 011233344444455689999999999999999998875544
Q ss_pred ------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 ------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 ------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|..+.+.|++ .+++|++|+ ++++|||++.
T Consensus 297 ~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----------~l~~GiDip~ 335 (401)
T PTZ00424 297 MHGDMDQKDRDLIMREFRSGSTRVLITTD-----------LLARGIDVQQ 335 (401)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----------cccCCcCccc
Confidence 3678888888887 667778774 9999999863
No 27
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=9.5e-36 Score=308.08 Aligned_cols=297 Identities=26% Similarity=0.388 Sum_probs=217.3
Q ss_pred CcccccccccCCCCccCCCC-CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHH
Q psy6275 38 LEYQPLAQSKEKPAREYPFV-LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSN 114 (391)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~ 114 (391)
|+.+++++.+.+.+++.||+ |+|+|.++++. +.+|+|+++++|||||||++|.+|+++.+. .+++++|++|+++|+.
T Consensus 3 ~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~ 82 (720)
T PRK00254 3 VDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAE 82 (720)
T ss_pred HHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHH
Confidence 55677888999999999997 99999999986 789999999999999999999999988754 5789999999999999
Q ss_pred HHHHHHHHhcc---cceeeeCCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHH
Q psy6275 115 QKYREFEEQFK---DVGLITGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET 187 (391)
Q Consensus 115 q~~~~~~~~~~---~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i 187 (391)
|+++.+..+.. .+..++|+.... .+++|+|+||+++..++......+++++++|+||+|.+.+.+++..++.+
T Consensus 83 q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~i 162 (720)
T PRK00254 83 EKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMI 162 (720)
T ss_pred HHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHH
Confidence 99999886532 677788876543 35789999999999888777677899999999999999988899999999
Q ss_pred HHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHh
Q psy6275 188 LILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL 267 (391)
Q Consensus 188 ~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 267 (391)
+..+..+.|++++|||+++..++++|++.. .+....+|.++...++.... . ...... ...+..
T Consensus 163 l~~l~~~~qiI~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~~~~~~~--~--~~~~~~--~~~~~~----- 225 (720)
T PRK00254 163 LTHMLGRAQILGLSATVGNAEELAEWLNAE------LVVSDWRPVKLRKGVFYQGF--L--FWEDGK--IERFPN----- 225 (720)
T ss_pred HHhcCcCCcEEEEEccCCCHHHHHHHhCCc------cccCCCCCCcceeeEecCCe--e--eccCcc--hhcchH-----
Confidence 999888899999999999999999998742 24456677776544332110 0 000000 000000
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCC--CChHHHHHHHHHH
Q psy6275 268 ANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF--NETEEVKLVDDVF 345 (391)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~--~~~~~r~~~~~~~ 345 (391)
.....+.+.+. .++++||||+||+.|+.+|..|.+... ....+...+.+..
T Consensus 226 -------------------------~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~ 278 (720)
T PRK00254 226 -------------------------SWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELA 278 (720)
T ss_pred -------------------------HHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 00112223333 246899999999999999999865321 0111111111111
Q ss_pred HHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 346 SNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 346 ~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
+. +.. ......+.+++..||++||+||+..+|+
T Consensus 279 -~~---~~~----~~~~~~L~~~l~~gv~~hHagl~~~eR~ 311 (720)
T PRK00254 279 -DS---LEE----NPTNEKLKKALRGGVAFHHAGLGRTERV 311 (720)
T ss_pred -HH---Hhc----CCCcHHHHHHHhhCEEEeCCCCCHHHHH
Confidence 11 100 0112457788999999999999988875
No 28
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=9.5e-36 Score=303.38 Aligned_cols=300 Identities=28% Similarity=0.355 Sum_probs=214.1
Q ss_pred cccccCCCCccCCC-CCcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHH
Q psy6275 43 LAQSKEKPAREYPF-VLDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 43 l~~~~~~~~~~~~~-~~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~ 119 (391)
+++.+.+.++..++ ++.+.|+.++.. +.+++|+++++|||||||+++++++++.+.. +.+++|++|+++|+.|.+++
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~ 95 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEE 95 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHH
Confidence 45556666667777 477777777765 4567999999999999999999999998877 58999999999999999999
Q ss_pred HH--Hhcc-cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC
Q psy6275 120 FE--EQFK-DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS 192 (391)
Q Consensus 120 ~~--~~~~-~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~ 192 (391)
|+ +.++ +|+..+|+..... .++|+|+|||++.....+....+..+++||+||+|.+.+..+|+.++.+.....
T Consensus 96 ~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~ 175 (766)
T COG1204 96 FSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMR 175 (766)
T ss_pred hhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHH
Confidence 99 2233 8999999988543 689999999999999998888899999999999999998889999999888764
Q ss_pred ---CCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhh
Q psy6275 193 ---DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLAN 269 (391)
Q Consensus 193 ---~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 269 (391)
...|++++|||+||..++++|++.......+-.....++.+..+.++...+....
T Consensus 176 ~~~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~---------------------- 233 (766)
T COG1204 176 RLNELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKT---------------------- 233 (766)
T ss_pred hhCcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCcccc----------------------
Confidence 3479999999999999999999853222222233334444444444433221100
Q ss_pred hhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc--CCCChHHHHHHHHHHHH
Q psy6275 270 AGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL--NFNETEEVKLVDDVFSN 347 (391)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~--g~~~~~~r~~~~~~~~~ 347 (391)
.+....+.+..++...... ++++||||+||+.+...|..|+.. +.....+..........
T Consensus 234 -----------------~~~~~~~~~~~~v~~~~~~-~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~ 295 (766)
T COG1204 234 -----------------WPLLIDNLALELVLESLAE-GGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASP 295 (766)
T ss_pred -----------------ccccchHHHHHHHHHHHhc-CCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccc
Confidence 0000012233333333333 459999999999999999999852 22222221111111111
Q ss_pred HhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 348 AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 348 ~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
. .. .+......+.+.+++.+||+||||||++.+|+
T Consensus 296 ~---~~-~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~ 330 (766)
T COG1204 296 I---LI-PETPTSEDEELAELVLRGVAFHHAGLPREDRQ 330 (766)
T ss_pred c---cc-ccccccchHHHHHHHHhCccccccCCCHHHHH
Confidence 1 11 11112233788999999999999999999886
No 29
>KOG0340|consensus
Probab=100.00 E-value=3.9e-36 Score=268.39 Aligned_cols=287 Identities=17% Similarity=0.191 Sum_probs=223.7
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|+.+++.+.+.+.++.+|.. |||+|..|||.|++|+|++-+|.||||||.+|.+|+++.++. +--++|+.|||+
T Consensus 7 ~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrE 86 (442)
T KOG0340|consen 7 KPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRE 86 (442)
T ss_pred CchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHH
Confidence 4789999999999999999997 999999999999999999999999999999999999999976 457999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcc-------cCCCCCEEEEcHHHHHHHHhcC----ccccCccceEEEecccccC
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVT-------INPSSSCLIMTTEILRNMLYRG----SEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~-------~~~~~~I~v~Tp~~l~~~l~~~----~~~l~~~~~lViDE~h~~~ 176 (391)
|+.|+.++|.-.++ ++.++.|+.. ....++++|+|||++..++..+ ...++++.++|+||||.++
T Consensus 87 LA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL 166 (442)
T KOG0340|consen 87 LALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVL 166 (442)
T ss_pred HHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhh
Confidence 99999999999887 6777888776 3557899999999999888765 2356789999999999999
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCC-eeEeee-CCCC--cCceEeeccCCCCCeeeeecC
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQP-CHVVYT-DYRP--TPLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~-~~v~~~-~~~~--~~i~~~~~~~~~~~~~~~v~~ 252 (391)
+..+...++.+.+.+|..+|.++||||+.+. +....+.....+ .+.... ++-+ ..+.+.++.++.+...
T Consensus 167 ~~~f~d~L~~i~e~lP~~RQtLlfSATitd~--i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkd----- 239 (442)
T KOG0340|consen 167 AGCFPDILEGIEECLPKPRQTLLFSATITDT--IKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKD----- 239 (442)
T ss_pred ccchhhHHhhhhccCCCccceEEEEeehhhH--HHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhH-----
Confidence 9999999999999999999999999999776 222222222221 222211 2222 2455555554432110
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCC
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF 332 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~ 332 (391)
..+..+++...+...+.++||+|+...|+.|+.-|..+++
T Consensus 240 ----------------------------------------aYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~ 279 (442)
T KOG0340|consen 240 ----------------------------------------AYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEV 279 (442)
T ss_pred ----------------------------------------HHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhce
Confidence 1123444444444567999999999999999999988755
Q ss_pred CC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 333 NE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 333 ~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
.. +.+|-.-...|+. ....|++|| +.+||.||+|+.|
T Consensus 280 r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTD-----------VAsRGLDIP~V~L 325 (442)
T KOG0340|consen 280 RVVSLHSQMPQKERLAALSRFRSNAARILIATD-----------VASRGLDIPTVEL 325 (442)
T ss_pred eeeehhhcchHHHHHHHHHHHhhcCccEEEEec-----------hhhcCCCCCceeE
Confidence 43 3556555666666 677777775 9999999998765
No 30
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-34 Score=298.47 Aligned_cols=282 Identities=26% Similarity=0.405 Sum_probs=218.7
Q ss_pred CcccccccccCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH
Q psy6275 38 LEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKY 117 (391)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~ 117 (391)
|+.+++++.+.+.+.+.+|+++++|.++++.+.+++|++++||||||||+++.+++++.+..+.+++|++|+++|+.|++
T Consensus 3 ~~~~~l~~~~~~~~~~~~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~ 82 (674)
T PRK01172 3 ISDLGYDDEFLNLFTGNDFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKY 82 (674)
T ss_pred HhhcCCCHHHHHHHhhCCCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHH
Confidence 56678889999899999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred HHHHHhcc---cceeeeCCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH
Q psy6275 118 REFEEQFK---DVGLITGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL 190 (391)
Q Consensus 118 ~~~~~~~~---~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~ 190 (391)
+.++++.. .+...+|+.... ...+|+|+||+++..++.+....+++++++|+||+|++.+.+++..++.++..
T Consensus 83 ~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~ 162 (674)
T PRK01172 83 EELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSS 162 (674)
T ss_pred HHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHH
Confidence 99987533 666777765533 35799999999999988877777889999999999999988899998887765
Q ss_pred h---CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHh
Q psy6275 191 L---SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL 267 (391)
Q Consensus 191 ~---~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 267 (391)
+ +.+.|++++|||+++..++++|++. ..+....++.+++..++.... .. .+... .
T Consensus 163 ~~~~~~~~riI~lSATl~n~~~la~wl~~------~~~~~~~r~vpl~~~i~~~~~--~~--~~~~~--~---------- 220 (674)
T PRK01172 163 ARYVNPDARILALSATVSNANELAQWLNA------SLIKSNFRPVPLKLGILYRKR--LI--LDGYE--R---------- 220 (674)
T ss_pred HHhcCcCCcEEEEeCccCCHHHHHHHhCC------CccCCCCCCCCeEEEEEecCe--ee--ecccc--c----------
Confidence 4 4678999999999999999999863 224556677777655432110 00 00000 0
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc-----------------
Q psy6275 268 ANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL----------------- 330 (391)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~----------------- 330 (391)
. ...+..++..... .++++||||+|+++|+.++..|...
T Consensus 221 ---------------------~--~~~~~~~i~~~~~-~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 276 (674)
T PRK01172 221 ---------------------S--QVDINSLIKETVN-DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVY 276 (674)
T ss_pred ---------------------c--cccHHHHHHHHHh-CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccc
Confidence 0 0012223332222 3469999999999999999988653
Q ss_pred ----------------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc
Q psy6275 331 ----------------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 331 ----------------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~ 376 (391)
+-...++|..+.+.|++ .+++|++| +++++|||++
T Consensus 277 ~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT-----------~~la~Gvnip 328 (674)
T PRK01172 277 DDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVAT-----------PTLAAGVNLP 328 (674)
T ss_pred cHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEec-----------chhhccCCCc
Confidence 11123678888888887 66777777 4999999985
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=2.1e-34 Score=296.34 Aligned_cols=288 Identities=17% Similarity=0.187 Sum_probs=204.7
Q ss_pred ccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHH
Q psy6275 42 PLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYR 118 (391)
Q Consensus 42 ~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~ 118 (391)
.+++.+.+.+.+.||+ |+++|.++|+.+.+|+|+++++|||||||++|++|+++.+.. +.++||++||++|+.|+..
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLR 99 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHH
Confidence 3667788899999997 999999999999999999999999999999999999998743 5699999999999999999
Q ss_pred HHHHhcc---cceeeeCCccc------CCCCCEEEEcHHHHHHHHhc-C---ccccCccceEEEecccccCccccchhHH
Q psy6275 119 EFEEQFK---DVGLITGDVTI------NPSSSCLIMTTEILRNMLYR-G---SEITREVGWVIFDEIHYMRDKERGYVWE 185 (391)
Q Consensus 119 ~~~~~~~---~v~~~~g~~~~------~~~~~I~v~Tp~~l~~~l~~-~---~~~l~~~~~lViDE~h~~~~~~~~~~~~ 185 (391)
.++++.. .+..++|+... ..+++|+|+||+++...+.. . ...+++++++|+||||.+.+ .++..+.
T Consensus 100 ~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~~~ 178 (742)
T TIGR03817 100 AVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSHVA 178 (742)
T ss_pred HHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHHHH
Confidence 9998853 56667887653 34689999999998743321 1 23478999999999999876 3676665
Q ss_pred HHHHHh-------CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhh
Q psy6275 186 ETLILL-------SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEH 258 (391)
Q Consensus 186 ~i~~~~-------~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~ 258 (391)
.++..+ +.++|++++|||++++..+++++. +.+..++..+..+....++.++.+.. .... .....
T Consensus 179 ~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~---g~~~~~i~~~~~~~~~~~~~~~~p~~-~~~~-~~~~~--- 250 (742)
T TIGR03817 179 LVLRRLRRLCARYGASPVFVLASATTADPAAAASRLI---GAPVVAVTEDGSPRGARTVALWEPPL-TELT-GENGA--- 250 (742)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHc---CCCeEEECCCCCCcCceEEEEecCCc-cccc-ccccc---
Confidence 555443 457899999999999866776543 35555555555554434443332210 0000 00000
Q ss_pred chHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc--------
Q psy6275 259 NYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL-------- 330 (391)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~-------- 330 (391)
..++... .....++..+... +.++||||+|++.|+.++..|++.
T Consensus 251 --------------------------~~r~~~~-~~~~~~l~~l~~~-~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l 302 (742)
T TIGR03817 251 --------------------------PVRRSAS-AEAADLLADLVAE-GARTLTFVRSRRGAELVAAIARRLLGEVDPDL 302 (742)
T ss_pred --------------------------ccccchH-HHHHHHHHHHHHC-CCCEEEEcCCHHHHHHHHHHHHHHHHhhcccc
Confidence 0000000 0111233333233 459999999999999999987652
Q ss_pred --------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 331 --------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 331 --------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
|-...++|..+++.|++ .+++|++|| ++++||||..
T Consensus 303 ~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd-----------~lerGIDI~~ 347 (742)
T TIGR03817 303 AERVAAYRAGYLPEDRRELERALRDGELLGVATTN-----------ALELGVDISG 347 (742)
T ss_pred ccchhheecCCCHHHHHHHHHHHHcCCceEEEECc-----------hHhccCCccc
Confidence 11224678888888888 678888885 9999999964
No 32
>KOG0952|consensus
Probab=100.00 E-value=4.9e-35 Score=291.58 Aligned_cols=278 Identities=25% Similarity=0.375 Sum_probs=212.0
Q ss_pred CCCC-CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHh----------cCCeEEEEcccHHHHHHHHHHHH
Q psy6275 54 YPFV-LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLK----------QSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 54 ~~~~-~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~----------~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
++|+ ++.+|..++|.+ .++.|.+|+||||+|||..+++.+++.++ .+.+++|++|+++|+.++++.|.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 4566 999999999965 67899999999999999999999999997 46799999999999999999999
Q ss_pred Hhcc----cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcC---ccccCccceEEEecccccCccccchhHHHHHHH
Q psy6275 122 EQFK----DVGLITGDVTINP----SSSCLIMTTEILRNMLYRG---SEITREVGWVIFDEIHYMRDKERGYVWEETLIL 190 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~---~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~ 190 (391)
+.+. .|..++||..... +++|+|+|||++.-.-.+. ...++.+++||+||+|.+-+ .+|+.++.+..+
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiVaR 264 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIVAR 264 (1230)
T ss_pred hhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHHHH
Confidence 9887 5667999988654 6899999999875322222 34567899999999998766 589999988765
Q ss_pred h-------CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHH
Q psy6275 191 L-------SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVA 263 (391)
Q Consensus 191 ~-------~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 263 (391)
. ....+++++|||+||-.+++.||+......++.|....||+|+++.++..+..+-. ... ..
T Consensus 265 tlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~-------~~~----~~ 333 (1230)
T KOG0952|consen 265 TLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNR-------QQK----KN 333 (1230)
T ss_pred HHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccch-------hhh----hh
Confidence 4 35689999999999999999999987667788999999999999999865432100 000 00
Q ss_pred HHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHHH
Q psy6275 264 MNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDD 343 (391)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~~ 343 (391)
+.. .....+.+.+.+ +.+++|||.+|..+.+.|+.|.+.+...
T Consensus 334 ~d~--------------------------~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~--------- 376 (1230)
T KOG0952|consen 334 IDE--------------------------VCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETN--------- 376 (1230)
T ss_pred HHH--------------------------HHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhc---------
Confidence 000 111234444433 4599999999999999999998643211
Q ss_pred HHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCcccccc
Q psy6275 344 VFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQS 387 (391)
Q Consensus 344 ~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~~ 387 (391)
+..+.+...+ ....+.+++.+|+++|||||++.+|+.
T Consensus 377 ---g~~~~f~~~~----~~k~l~elf~~g~~iHhAGm~r~DR~l 413 (1230)
T KOG0952|consen 377 ---GEKDLFLPSP----RNKQLKELFQQGMGIHHAGMLRSDRQL 413 (1230)
T ss_pred ---CcccccCCCh----hhHHHHHHHHhhhhhcccccchhhHHH
Confidence 1112222111 123466799999999999999999963
No 33
>KOG4284|consensus
Probab=100.00 E-value=1.5e-35 Score=281.98 Aligned_cols=295 Identities=18% Similarity=0.191 Sum_probs=247.7
Q ss_pred CCCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEccc
Q psy6275 34 LPPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPI 109 (391)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~ 109 (391)
.+.+|+.+.+..+++..++..+|. ||++|..|||.+..+.++|+.|..|+|||++|...+++.+. ...+.+|++||
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PT 102 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPT 102 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecc
Confidence 456888899999999999999997 99999999999999999999999999999999888877764 35799999999
Q ss_pred HHHHHHHHHHHHHhcc-----cceeeeCCcccCC------CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-
Q psy6275 110 KALSNQKYREFEEQFK-----DVGLITGDVTINP------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD- 177 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~-----~v~~~~g~~~~~~------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~- 177 (391)
|+++-|+.+.+...+. ++.++.|++.... +++|+|+|||++..++..+...+.+++++|+||||.+.+
T Consensus 103 REiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t 182 (980)
T KOG4284|consen 103 REIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDT 182 (980)
T ss_pred hhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhch
Confidence 9999999999999887 6778888887542 578999999999999998888899999999999999887
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCC--cCceEeeccCCCCCeeeeecCchh
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRP--TPLQHYLFPNGGDGIHLIVDDNKF 255 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~--~~i~~~~~~~~~~~~~~~v~~~~~ 255 (391)
..+...+..|+..+|..+|++++|||.|.. +.+.|..++..|..+.-+...+ ..+++|++..+...
T Consensus 183 ~sfq~~In~ii~slP~~rQv~a~SATYp~n--Ldn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~n---------- 250 (980)
T KOG4284|consen 183 ESFQDDINIIINSLPQIRQVAAFSATYPRN--LDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPN---------- 250 (980)
T ss_pred hhHHHHHHHHHHhcchhheeeEEeccCchh--HHHHHHHHhcccceeecccCCceeechhheeeeccCCc----------
Confidence 568888999999999999999999999876 5666667777888876555443 37889988765321
Q ss_pred hhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh
Q psy6275 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET 335 (391)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~ 335 (391)
.....|. .+++.|-+.++..+..+.||||+....|+.+|..|.+.|+.+.
T Consensus 251 ---nsveemr---------------------------lklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~ 300 (980)
T KOG4284|consen 251 ---NSVEEMR---------------------------LKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVT 300 (980)
T ss_pred ---chHHHHH---------------------------HHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeE
Confidence 1111111 2345677777788888999999999999999999999999875
Q ss_pred --------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCCC
Q psy6275 336 --------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKP 381 (391)
Q Consensus 336 --------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~ 381 (391)
.+|...++.++. .+++|++|| +.+||||-.|++|-
T Consensus 301 ~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD-----------LtaRGIDa~~vNLV 344 (980)
T KOG4284|consen 301 FISGAMSQKDRLLAVDQLRAFRVRILVSTD-----------LTARGIDADNVNLV 344 (980)
T ss_pred EeccccchhHHHHHHHHhhhceEEEEEecc-----------hhhccCCccccceE
Confidence 677777788877 668888885 99999999999873
No 34
>KOG0332|consensus
Probab=100.00 E-value=2.5e-34 Score=258.33 Aligned_cols=286 Identities=16% Similarity=0.147 Sum_probs=229.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~ 109 (391)
.+|+++.|.|++++.+..++|+ |+.+|..|+|.++. .+|++..+..|+|||.+|.+.++..+.. .+++++|+|+
T Consensus 90 ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPt 169 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPT 169 (477)
T ss_pred ccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCch
Confidence 4899999999999999999998 99999999998864 5899999999999999999999998854 5799999999
Q ss_pred HHHHHHHHHHHHHhcccc----ee-eeCCcccCC---CCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCcc-c
Q psy6275 110 KALSNQKYREFEEQFKDV----GL-ITGDVTINP---SSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRDK-E 179 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~~v----~~-~~g~~~~~~---~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~~-~ 179 (391)
|+|+.|+...+.+.++.. .+ +.|+...+. ..+|+|+||+.+.+++.. ....+..++.+|+||||.|.+. +
T Consensus 170 rELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG 249 (477)
T KOG0332|consen 170 RELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQG 249 (477)
T ss_pred HHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhccc
Confidence 999999999999998833 22 223322222 357999999999999887 6677889999999999998764 5
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEH 258 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~ 258 (391)
++..--.+...++.+.|++++|||+... +.|+..+- ...+++.+-.......++.++++.+...
T Consensus 250 ~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kiv-pn~n~i~Lk~eel~L~~IkQlyv~C~~~-------------- 314 (477)
T KOG0332|consen 250 FQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIV-PNANVIILKREELALDNIKQLYVLCACR-------------- 314 (477)
T ss_pred ccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhc-CCCceeeeehhhccccchhhheeeccch--------------
Confidence 6666677888899999999999999776 66666432 1223344444555667899998887643
Q ss_pred chHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh---
Q psy6275 259 NYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--- 335 (391)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--- 335 (391)
+++...|..++.....+++||||.|++.|..++..|++.|....
T Consensus 315 ---------------------------------~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~ 361 (477)
T KOG0332|consen 315 ---------------------------------DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLH 361 (477)
T ss_pred ---------------------------------hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEee
Confidence 24455666666555667999999999999999999999887654
Q ss_pred -----HHHHHHHHHHHHH-hhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 336 -----EEVKLVDDVFSNA-MDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 336 -----~~r~~~~~~~~~~-~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
++|..+.+.|+.+ ..+|+.| ++++||||+..+++
T Consensus 362 G~l~~~~R~~ii~~Fr~g~~kVLitT-----------nV~ARGiDv~qVs~ 401 (477)
T KOG0332|consen 362 GDLTVEQRAAIIDRFREGKEKVLITT-----------NVCARGIDVAQVSV 401 (477)
T ss_pred ccchhHHHHHHHHHHhcCcceEEEEe-----------chhhcccccceEEE
Confidence 7889998888884 4666655 69999999987654
No 35
>KOG0348|consensus
Probab=100.00 E-value=5.2e-34 Score=266.60 Aligned_cols=187 Identities=20% Similarity=0.240 Sum_probs=155.8
Q ss_pred CCCcccccccccCCCCcc-CCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEE
Q psy6275 36 PDLEYQPLAQSKEKPARE-YPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVI 104 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~-~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vl 104 (391)
..|..++|++.+...++. +++. ||.+|+++||.+++|++++|.++||||||++|++|+.+.+. .|.-+|
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 368889999998877665 6786 99999999999999999999999999999999999999884 367899
Q ss_pred EEcccHHHHHHHHHHHHHhccc-----ceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCc-cccCccceEEEec
Q psy6275 105 YTTPIKALSNQKYREFEEQFKD-----VGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGS-EITREVGWVIFDE 171 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~~-----v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~-~~l~~~~~lViDE 171 (391)
|++|||||+.|+|+.++++.+. .+++.|+... +...+|+|+|||+|++++.+.. ..++.++++|+||
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDE 295 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDE 295 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecc
Confidence 9999999999999999999882 2445555442 3467899999999999998754 4678899999999
Q ss_pred ccccCccccchhHHHHHHHhC-------------CCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 172 IHYMRDKERGYVWEETLILLS-------------DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 172 ~h~~~~~~~~~~~~~i~~~~~-------------~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
+|++++.+|+..+..|+..+. ...|-+++|||+.+. ..+++ ....+|.++-
T Consensus 296 aDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~---~sLkDpv~I~ 360 (708)
T KOG0348|consen 296 ADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLAD---LSLKDPVYIS 360 (708)
T ss_pred hhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhh---ccccCceeee
Confidence 999999999999999888762 247889999999776 55665 3345666654
No 36
>KOG0336|consensus
Probab=100.00 E-value=2.4e-34 Score=260.99 Aligned_cols=274 Identities=16% Similarity=0.188 Sum_probs=214.9
Q ss_pred cccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEEEEcccH
Q psy6275 41 QPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVIYTTPIK 110 (391)
Q Consensus 41 ~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vlvl~P~~ 110 (391)
+.-.+++++++++.||+ |+|+|.+|+|.++.|.+++.+|.||+|||++|++|-+-++. .++.+|++.||+
T Consensus 225 Fq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptr 304 (629)
T KOG0336|consen 225 FQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTR 304 (629)
T ss_pred HhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccH
Confidence 45566788999999997 99999999999999999999999999999999998765552 257899999999
Q ss_pred HHHHHHHHHHHHhcc----cceeeeCCcc------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc
Q psy6275 111 ALSNQKYREFEEQFK----DVGLITGDVT------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 111 ~L~~q~~~~~~~~~~----~v~~~~g~~~------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~ 180 (391)
+|+.|+.-+..++.- .+.+..|+.. ......|+++||++|..+...+...+..+.++|+||||.|+|++|
T Consensus 305 eLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgF 384 (629)
T KOG0336|consen 305 ELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGF 384 (629)
T ss_pred HHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccc
Confidence 999999877766643 3333433322 345689999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCc---CceEeeccCCCCCeeeeecCchhh
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPT---PLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~---~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
.+.+..++-.+++++|+++.|||.|.. ..++. .++++|..++......+ .+++.++.....
T Consensus 385 EpqIrkilldiRPDRqtvmTSATWP~~VrrLa~---sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~------------ 449 (629)
T KOG0336|consen 385 EPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQ---SYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDS------------ 449 (629)
T ss_pred cHHHHHHhhhcCCcceeeeecccCchHHHHHHH---HhhhCceEEEecccceeeeeeeeeeEEecccH------------
Confidence 999999999999999999999999887 66666 56678888887766544 466666432211
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH--cCCCcEEEEEcchhhHHHHHHHhhccCCCC
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAKLNFNE 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~iIF~~t~~~~~~la~~L~~~g~~~ 334 (391)
+++ .++..+.+ ....++||||..+..|+.|...|.-.|+.+
T Consensus 450 ------------------------------------~k~-~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~ 492 (629)
T KOG0336|consen 450 ------------------------------------EKL-EIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISS 492 (629)
T ss_pred ------------------------------------HHH-HHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccch
Confidence 111 22222222 235699999999999999999998877776
Q ss_pred h--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 T--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 ~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+ ..|+...+.|+. .+.+|++| |+.+||+|+|.
T Consensus 493 q~lHG~r~Q~DrE~al~~~ksG~vrILvaT-----------DlaSRGlDv~D 533 (629)
T KOG0336|consen 493 QSLHGNREQSDREMALEDFKSGEVRILVAT-----------DLASRGLDVPD 533 (629)
T ss_pred hhccCChhhhhHHHHHHhhhcCceEEEEEe-----------chhhcCCCchh
Confidence 5 334444555555 56666666 59999999974
No 37
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=4.4e-33 Score=262.48 Aligned_cols=279 Identities=24% Similarity=0.401 Sum_probs=222.4
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHH-HHhcCCeEEEEcccHHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIAS-SLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~-~l~~~~~vlvl~P~~~L~ 113 (391)
..+.+++++.+..-++..|++ +.|+|..++.. +++|+|.+++++|+||||++..++-+. .+..+.+.|+++|..+|+
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALA 274 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALA 274 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhh
Confidence 457889999999999999997 99999999986 789999999999999999999766444 556699999999999999
Q ss_pred HHHHHHHHHhccc----ceeeeCCcc-----------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc
Q psy6275 114 NQKYREFEEQFKD----VGLITGDVT-----------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK 178 (391)
Q Consensus 114 ~q~~~~~~~~~~~----v~~~~g~~~-----------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~ 178 (391)
+|-+..|++..++ +.+..|-.. ...+++|+|+|++-+..++..+ ..+.+++.+||||+|.+.+.
T Consensus 275 NQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~de 353 (830)
T COG1202 275 NQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDE 353 (830)
T ss_pred cchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccch
Confidence 9999999988773 323333222 2346899999999998877766 66899999999999999998
Q ss_pred ccchhHHHHHHHhC---CCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchh
Q psy6275 179 ERGYVWEETLILLS---DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKF 255 (391)
Q Consensus 179 ~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~ 255 (391)
.+|+.++.++..++ ++.|+|.+|||..|+..+++.++. ..+..+.||+|++.+++.+.+..
T Consensus 354 ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a------~lV~y~~RPVplErHlvf~~~e~---------- 417 (830)
T COG1202 354 ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGA------KLVLYDERPVPLERHLVFARNES---------- 417 (830)
T ss_pred hcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCC------eeEeecCCCCChhHeeeeecCch----------
Confidence 99999998887654 579999999999999999998873 45667899999998887654320
Q ss_pred hhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHH-H---HHcC-CCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKM-I---MERN-LAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l---~~~~-~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
... +.+..|++. . ...+ .++||||.+||+.|..+|..|...
T Consensus 418 ---eK~-------------------------------~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k 463 (830)
T COG1202 418 ---EKW-------------------------------DIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK 463 (830)
T ss_pred ---HHH-------------------------------HHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC
Confidence 000 111122211 1 1111 469999999999999999999988
Q ss_pred CCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 331 NFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 331 g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
|+.+. .+|..+...|.+ .+.+++.| .+|+.||||+-
T Consensus 464 G~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT-----------AAL~AGVDFPA 508 (830)
T COG1202 464 GLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT-----------AALAAGVDFPA 508 (830)
T ss_pred CcccccccCCCcHHHHHHHHHHHhcCCcceEeeh-----------hhhhcCCCCch
Confidence 88875 678888888888 66777766 58889999873
No 38
>KOG0327|consensus
Probab=100.00 E-value=2e-33 Score=254.30 Aligned_cols=280 Identities=18% Similarity=0.250 Sum_probs=229.0
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|+.++|++.++..+..+||+ |+.+|+.||..+..|.|+.+.+.+|+|||.+|..++++.+.. ..++++++|+++
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtre 105 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRE 105 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHH
Confidence 4899999999999999999998 999999999999999999999999999999999999998743 468999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcccC--------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTIN--------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~~--------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|.......++. .+..+.|+.... ..++|+++||+++..++.......+.++++|+||+|+|+..+
T Consensus 106 La~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~g 185 (397)
T KOG0327|consen 106 LAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRG 185 (397)
T ss_pred HHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccc
Confidence 99999988877776 344455655433 136899999999999998887777889999999999999999
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCC--cCceEeeccCCCCCeeeeecCchhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRP--TPLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~--~~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+...+..+...++.+.|++++|||.|.. ..+.+ .++.+|..+....... ..++++++.+..+
T Consensus 186 fkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~---~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~------------ 250 (397)
T KOG0327|consen 186 FKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTK---KFMREPVRILVKKDELTLEGIKQFYINVEKE------------ 250 (397)
T ss_pred hHHHHHHHHHHcCcchhheeecccCcHHHHHHHH---HhccCceEEEecchhhhhhheeeeeeecccc------------
Confidence 9999999999999999999999999877 55555 4556777776655443 3567777655432
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-- 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-- 334 (391)
+++.-+...+. ...+.+|||||++.+..+...|.+.+.+.
T Consensus 251 ------------------------------------~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~ 292 (397)
T KOG0327|consen 251 ------------------------------------EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSA 292 (397)
T ss_pred ------------------------------------ccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEE
Confidence 12334444444 45689999999999999999998876654
Q ss_pred ------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 335 ------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 335 ------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+.+|+.++..|+. ..++|+.+ ++++||||+-...
T Consensus 293 ~~~d~~q~~R~~~~~ef~~gssrvlItt-----------dl~argidv~~~s 333 (397)
T KOG0327|consen 293 IHGDMEQNERDTLMREFRSGSSRVLITT-----------DLLARGIDVQQVS 333 (397)
T ss_pred eecccchhhhhHHHHHhhcCCceEEeec-----------cccccccchhhcc
Confidence 3678888888777 55777777 4999999997643
No 39
>KOG0339|consensus
Probab=100.00 E-value=7.8e-33 Score=257.15 Aligned_cols=280 Identities=18% Similarity=0.207 Sum_probs=227.6
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--------cCCeEEEEc
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--------QSQRVIYTT 107 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--------~~~~vlvl~ 107 (391)
+|..++++..+...+++..|+ |||+|.+++|..+.+++++-.|-||||||.+|+.|++.++. .++..||++
T Consensus 224 sfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilv 303 (731)
T KOG0339|consen 224 SFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILV 303 (731)
T ss_pred hhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEe
Confidence 566777788888888888887 99999999999999999999999999999999999988773 368899999
Q ss_pred ccHHHHHHHHHHHHHhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC
Q psy6275 108 PIKALSNQKYREFEEQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 108 P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
|||+|+.|++.+.+++++ ++..++|+.+.+ ..+.|+||||++|.+++.-+...+.++.+||+||+++|.
T Consensus 304 PTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmf 383 (731)
T KOG0339|consen 304 PTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMF 383 (731)
T ss_pred ccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhh
Confidence 999999999999999977 445567766543 457899999999999999888889999999999999999
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCC--cCceEeeccCCCCCeeeeecCc
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRP--TPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~--~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
+++|.+.+..|..++++++|.++||||++.. +.+++ .+..+|+.+...+... ..|.|.+..++.+
T Consensus 384 dmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lar---d~L~dpVrvVqg~vgean~dITQ~V~V~~s~--------- 451 (731)
T KOG0339|consen 384 DMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLAR---DILSDPVRVVQGEVGEANEDITQTVSVCPSE--------- 451 (731)
T ss_pred ccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHH---HHhcCCeeEEEeehhccccchhheeeeccCc---------
Confidence 9999999999999999999999999999766 44444 4456788877664432 3466666655533
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhHHHHHHHhhccCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDCEIYAMQMAKLNF 332 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~~~la~~L~~~g~ 332 (391)
..+++-+++-|.+ ...+++||||..+..++.++..|.-.|+
T Consensus 452 --------------------------------------~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~ 493 (731)
T KOG0339|consen 452 --------------------------------------EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF 493 (731)
T ss_pred --------------------------------------HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc
Confidence 1334445554444 2356999999999999999999988877
Q ss_pred CCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 333 NET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 333 ~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
++. .+|..+...|+. ...+|+.|| +.+||.||.+
T Consensus 494 ~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatD-----------vaargldI~~ 536 (731)
T KOG0339|consen 494 NVSLLHGDKDQAERNEVLSKFKKKRKPVLVATD-----------VAARGLDIPS 536 (731)
T ss_pred eeeeecCchhhHHHHHHHHHHhhcCCceEEEee-----------HhhcCCCccc
Confidence 763 677777777777 467777775 8888888864
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1e-31 Score=265.54 Aligned_cols=265 Identities=15% Similarity=0.142 Sum_probs=187.4
Q ss_pred ccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceee
Q psy6275 52 REYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLI 130 (391)
Q Consensus 52 ~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~ 130 (391)
+.+||+ |+|+|.++|+.+++++++++++|||+|||++|++|++. .++.++|++|+++|+.|+...+....-.+..+
T Consensus 5 ~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~---~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 5 TVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC---SDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH---cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 346887 99999999999999999999999999999999999875 37789999999999999999998776566666
Q ss_pred eCCccc-----------CCCCCEEEEcHHHHHHHH--hcCccccCccceEEEecccccCcccc--chhHHHH---HHHhC
Q psy6275 131 TGDVTI-----------NPSSSCLIMTTEILRNML--YRGSEITREVGWVIFDEIHYMRDKER--GYVWEET---LILLS 192 (391)
Q Consensus 131 ~g~~~~-----------~~~~~I~v~Tp~~l~~~l--~~~~~~l~~~~~lViDE~h~~~~~~~--~~~~~~i---~~~~~ 192 (391)
.++... ....+|+++||+++.... .........++++|+||||++++++. ...+..+ ...+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~- 160 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKF- 160 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHc-
Confidence 665442 235789999999875321 11111456899999999999988753 3333332 2233
Q ss_pred CCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhh
Q psy6275 193 DNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANA 270 (391)
Q Consensus 193 ~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 270 (391)
++.+++++|||+++. .++.++++. ..+........+ .++...+....
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l--~~~~~~~~s~~r-~nl~~~v~~~~---------------------------- 209 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNL--KNPQIFCTSFDR-PNLYYEVRRKT---------------------------- 209 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCC--CCCcEEeCCCCC-CCcEEEEEeCC----------------------------
Confidence 468899999999875 456666542 223222222122 22221111000
Q ss_pred hhhhccCCCCCCCCCCCCCCCcccHHHHHHHHH-HcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHH
Q psy6275 271 GDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIM-ERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLV 341 (391)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~ 341 (391)
.+....+...+. ...++++||||+|+++|+.++..|.+.|+.+ .++|..+
T Consensus 210 ---------------------~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i 268 (470)
T TIGR00614 210 ---------------------PKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDV 268 (470)
T ss_pred ---------------------ccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHH
Confidence 012334555555 3445567999999999999999999887764 3678888
Q ss_pred HHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 342 DDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 342 ~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
.+.|++ .+.+|++|+ ++++|||++ |.++|..
T Consensus 269 ~~~F~~g~~~vLVaT~-----------~~~~GID~p~V~~VI~~~~P~s 306 (470)
T TIGR00614 269 HHKFQRDEIQVVVATV-----------AFGMGINKPDVRFVIHYSLPKS 306 (470)
T ss_pred HHHHHcCCCcEEEEec-----------hhhccCCcccceEEEEeCCCCC
Confidence 888877 667888774 999999997 4556643
No 41
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.1e-31 Score=281.44 Aligned_cols=282 Identities=26% Similarity=0.320 Sum_probs=192.6
Q ss_pred cccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEEEEcccHHHHH
Q psy6275 45 QSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVIYTTPIKALSN 114 (391)
Q Consensus 45 ~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vlvl~P~~~L~~ 114 (391)
+.+...+.. +|. |+|+|.++++.+.+|+|++++||||||||++|.+|++..+. .+.++||++|+++|+.
T Consensus 20 ~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~ 98 (876)
T PRK13767 20 PYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNN 98 (876)
T ss_pred HHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHH
Confidence 333333333 565 99999999999999999999999999999999999988763 2457999999999999
Q ss_pred HHHHHHHHh-------c--------c-cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCc--cccCccceEEE
Q psy6275 115 QKYREFEEQ-------F--------K-DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGS--EITREVGWVIF 169 (391)
Q Consensus 115 q~~~~~~~~-------~--------~-~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~--~~l~~~~~lVi 169 (391)
|+++.+... . . .+.+.+|+.... ..++|+|+||+++..++.... ..++++++||+
T Consensus 99 di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVI 178 (876)
T PRK13767 99 DIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIV 178 (876)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEE
Confidence 998866532 1 1 456688887632 357999999999987775432 25789999999
Q ss_pred ecccccCccccchhHHHHHHHh----CCCCcEEEEcccCCChHHHHHHhcccc----CCCeeEeeeCCCCcCceEeeccC
Q psy6275 170 DEIHYMRDKERGYVWEETLILL----SDNVRFVFLSATIPNASQFAQWVSHLH----HQPCHVVYTDYRPTPLQHYLFPN 241 (391)
Q Consensus 170 DE~h~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~l~~~~----~~~~~v~~~~~~~~~i~~~~~~~ 241 (391)
||+|.+.+..++..+...+..+ +...|++++|||+++.+.++.|+.... ..++.+...... .++...+..
T Consensus 179 DE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~-k~~~i~v~~- 256 (876)
T PRK13767 179 DEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFV-KPFDIKVIS- 256 (876)
T ss_pred echhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCC-ccceEEEec-
Confidence 9999998877887766555433 367899999999998888999987532 122222211111 111111111
Q ss_pred CCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHH
Q psy6275 242 GGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCE 321 (391)
Q Consensus 242 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~ 321 (391)
+...... ....... ......+.+.+.+ .+++||||||++.|+
T Consensus 257 p~~~l~~------~~~~~~~------------------------------~~l~~~L~~~i~~--~~~~LVF~nTr~~ae 298 (876)
T PRK13767 257 PVDDLIH------TPAEEIS------------------------------EALYETLHELIKE--HRTTLIFTNTRSGAE 298 (876)
T ss_pred cCccccc------cccchhH------------------------------HHHHHHHHHHHhc--CCCEEEEeCCHHHHH
Confidence 1000000 0000000 0111223333322 458999999999999
Q ss_pred HHHHHhhcc--------------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 322 IYAMQMAKL--------------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 322 ~la~~L~~~--------------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.++..|++. |--..++|..+++.|++ .++++++|+ .+++|||+...
T Consensus 299 ~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs-----------~Le~GIDip~V 359 (876)
T PRK13767 299 RVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSST-----------SLELGIDIGYI 359 (876)
T ss_pred HHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----------hHHhcCCCCCC
Confidence 999999762 11234788889888888 667888774 99999999753
No 42
>KOG0337|consensus
Probab=99.98 E-value=9.1e-33 Score=251.73 Aligned_cols=282 Identities=18% Similarity=0.198 Sum_probs=219.1
Q ss_pred CCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC----CeEEEEccc
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS----QRVIYTTPI 109 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~----~~vlvl~P~ 109 (391)
..+|..++|...+..++.+.||. |||+|.+.||.++++++++..|-||||||.+|++|++..+... .|++++.||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 45899999999999999999997 9999999999999999999999999999999999999998764 499999999
Q ss_pred HHHHHHHHHHHHHhcc----cceeeeCCcc-------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc
Q psy6275 110 KALSNQKYREFEEQFK----DVGLITGDVT-------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK 178 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~----~v~~~~g~~~-------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~ 178 (391)
++|+.|+.+.++++.. +..++.|+.. +..+++|+++||++++.+.-+-...++.+.+||+||+|.+.++
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 9999999999999887 3444555433 3557999999999998877666677899999999999999999
Q ss_pred ccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCc--CceEeeccCCCCCeeeeecCchhh
Q psy6275 179 ERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPT--PLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~--~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+|...+..++..++.+.|.++||||+|+. +.++-..-...|..+...-+... .++..+..+..
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~--lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~------------- 244 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRD--LVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRK------------- 244 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchh--hHHHHHccCCCCceEEeehhhhcchhhhhheeeecc-------------
Confidence 99999999999999999999999999876 33333344455666543322211 23332222211
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcC-CCcEEEEEcchhhHHHHHHHhhccCCCCh
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERN-LAPVIVFSFSKKDCEIYAMQMAKLNFNET 335 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~iIF~~t~~~~~~la~~L~~~g~~~~ 335 (391)
.++...|+.++.... .++++|||.|+.+++.+...|+..|+.+.
T Consensus 245 -----------------------------------a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s 289 (529)
T KOG0337|consen 245 -----------------------------------AEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGS 289 (529)
T ss_pred -----------------------------------HHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCcc
Confidence 144556777666643 35899999999999999999999888765
Q ss_pred --------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 336 --------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 336 --------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+-|......|+. .... ++.+|+.+||+||+-
T Consensus 290 ~iysslD~~aRk~~~~~F~~~k~~~-----------lvvTdvaaRG~dipl 329 (529)
T KOG0337|consen 290 DIYSSLDQEARKINGRDFRGRKTSI-----------LVVTDVAARGLDIPL 329 (529)
T ss_pred ccccccChHhhhhccccccCCccce-----------EEEehhhhccCCCcc
Confidence 223322233333 3334 445569999999974
No 43
>KOG0334|consensus
Probab=99.97 E-value=5.1e-32 Score=271.98 Aligned_cols=280 Identities=19% Similarity=0.268 Sum_probs=225.1
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--------cCCeEEEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--------QSQRVIYT 106 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--------~~~~vlvl 106 (391)
.+|...++...++..++++||. |+++|.+|||+++.|+++|.+|.||||||++|++|++.++. .++-++|+
T Consensus 365 ~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~ 444 (997)
T KOG0334|consen 365 TSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALIL 444 (997)
T ss_pred chHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEE
Confidence 3789999999999999999997 99999999999999999999999999999999999998773 37899999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCcc---ccCccceEEEecc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSE---ITREVGWVIFDEI 172 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~---~l~~~~~lViDE~ 172 (391)
+||++|+.|+.+.++.+.. .+..++|+... +..+.|+||||+++.+.+-.+.. .+..+.++|+|||
T Consensus 445 aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~dea 524 (997)
T KOG0334|consen 445 APTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEA 524 (997)
T ss_pred cCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechh
Confidence 9999999999999998887 44456676653 34589999999999988765544 4455669999999
Q ss_pred cccCccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCc---CceEeeccCCCCCeee
Q psy6275 173 HYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPT---PLQHYLFPNGGDGIHL 248 (391)
Q Consensus 173 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~---~i~~~~~~~~~~~~~~ 248 (391)
|.|.+.++.+..-.|+..+++.+|.+++|||++.. +.++..+ ...|+.+... ++.+ .+++.+..+...
T Consensus 525 DrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~v---l~~Pveiiv~-~~svV~k~V~q~v~V~~~e---- 596 (997)
T KOG0334|consen 525 DRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKV---LKKPVEIIVG-GRSVVCKEVTQVVRVCAIE---- 596 (997)
T ss_pred hhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHh---hcCCeeEEEc-cceeEeccceEEEEEecCc----
Confidence 99999999999888999999999999999999887 6677754 3466665544 3322 455555544321
Q ss_pred eecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc-CCCcEEEEEcchhhHHHHHHHh
Q psy6275 249 IVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER-NLAPVIVFSFSKKDCEIYAMQM 327 (391)
Q Consensus 249 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIF~~t~~~~~~la~~L 327 (391)
.+++..|.+++.+. ...++||||.+...|+.+...|
T Consensus 597 -------------------------------------------~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L 633 (997)
T KOG0334|consen 597 -------------------------------------------NEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDL 633 (997)
T ss_pred -------------------------------------------hHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHH
Confidence 13445566655542 2469999999999999999999
Q ss_pred hccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 328 AKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 328 ~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
.+.|++|. .+|+...+.|++ -...|++| +.++||+|+.+
T Consensus 634 ~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaT-----------svvarGLdv~~ 681 (997)
T KOG0334|consen 634 QKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVAT-----------SVVARGLDVKE 681 (997)
T ss_pred HhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEeh-----------hhhhccccccc
Confidence 99998864 678888888887 45666666 58999999854
No 44
>KOG0347|consensus
Probab=99.97 E-value=1.1e-32 Score=258.62 Aligned_cols=279 Identities=16% Similarity=0.176 Sum_probs=200.4
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHh--------------cC
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLK--------------QS 100 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~--------------~~ 100 (391)
-|..+.++.++++.+..+||. ||++|...+|.+..| .+++..|.||||||++|-+|+++.+. .+
T Consensus 182 AW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~ 261 (731)
T KOG0347|consen 182 AWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKY 261 (731)
T ss_pred HHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhcc
Confidence 466779999999999999997 999999999998887 79999999999999999999998442 23
Q ss_pred Ce--EEEEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCcc---ccCcc
Q psy6275 101 QR--VIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSE---ITREV 164 (391)
Q Consensus 101 ~~--vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~---~l~~~ 164 (391)
.+ .||++|||+|+.|+.+.+..... .+..++|+... +..++|+|+|||+|+.++..... .++++
T Consensus 262 ~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~v 341 (731)
T KOG0347|consen 262 VKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKV 341 (731)
T ss_pred CcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhc
Confidence 45 99999999999999999998887 55668888774 44789999999999999987643 56789
Q ss_pred ceEEEecccccCccccchhHHHHHHHhC-----CCCcEEEEcccCCCh--HHHHH--------------------Hhccc
Q psy6275 165 GWVIFDEIHYMRDKERGYVWEETLILLS-----DNVRFVFLSATIPNA--SQFAQ--------------------WVSHL 217 (391)
Q Consensus 165 ~~lViDE~h~~~~~~~~~~~~~i~~~~~-----~~~~~i~~SAT~~~~--~~~~~--------------------~l~~~ 217 (391)
.++|+||+|+|.+.+.-..+..++..+. ..+|.+.||||+.-. ..+.. .++ +
T Consensus 342 kcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig-~ 420 (731)
T KOG0347|consen 342 KCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIG-F 420 (731)
T ss_pred eEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhC-c
Confidence 9999999999998877777777777664 468999999998632 11111 111 1
Q ss_pred cCCCeeEeeeCCC--CcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccH
Q psy6275 218 HHQPCHVVYTDYR--PTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNC 295 (391)
Q Consensus 218 ~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (391)
.+.|-.+-..... ...+.+..+.|+..+ +-
T Consensus 421 ~~kpkiiD~t~q~~ta~~l~Es~I~C~~~e------------------------------------------------KD 452 (731)
T KOG0347|consen 421 RGKPKIIDLTPQSATASTLTESLIECPPLE------------------------------------------------KD 452 (731)
T ss_pred cCCCeeEecCcchhHHHHHHHHhhcCCccc------------------------------------------------cc
Confidence 1112111111000 001111111111110 00
Q ss_pred HHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHHH-hhhcchhhccCcchHhHH
Q psy6275 296 FKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSNA-MDVLSEEDRKLPQIENIL 366 (391)
Q Consensus 296 ~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~~-~~~l~~~d~~~~~~~~~~ 366 (391)
..++.++...+ +++|||||+...+..|+..|...++++- ..|-...+.|++. -.+|++|
T Consensus 453 ~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaT----------- 520 (731)
T KOG0347|consen 453 LYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIAT----------- 520 (731)
T ss_pred eeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEee-----------
Confidence 11222223333 5899999999999999999999888763 4566667777773 3455555
Q ss_pred HHHHhhhhhc
Q psy6275 367 PLLRRGIGIH 376 (391)
Q Consensus 367 ~~l~~GI~~~ 376 (391)
|+.+||+||+
T Consensus 521 DVAARGLDIp 530 (731)
T KOG0347|consen 521 DVAARGLDIP 530 (731)
T ss_pred hhhhccCCCC
Confidence 6999999996
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=5.8e-31 Score=265.36 Aligned_cols=284 Identities=25% Similarity=0.335 Sum_probs=212.1
Q ss_pred ccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--------CCeEEEEcccHHH
Q psy6275 42 PLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--------SQRVIYTTPIKAL 112 (391)
Q Consensus 42 ~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--------~~~vlvl~P~~~L 112 (391)
-|++.+.+.++.. |. ||+.|.+||+.+.+|+|++++||||||||.++++|++..+-. +-.+||+.|.|+|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 4556666677777 64 999999999999999999999999999999999999887632 2579999999999
Q ss_pred HHHHHHHHHHhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcC--ccccCccceEEEecccccCccc
Q psy6275 113 SNQKYREFEEQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRG--SEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 113 ~~q~~~~~~~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~--~~~l~~~~~lViDE~h~~~~~~ 179 (391)
.+++...+..+.. .+.+.||+++.. .-++|+++|||.+.-++... ...+.+++++|+||+|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999998877 677899998753 24799999999998777653 3578899999999999998888
Q ss_pred cchhHHHHHHHhC---CCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhh
Q psy6275 180 RGYVWEETLILLS---DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 180 ~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+|..+...+.++. .+.|.|++|||..+...+++|+.... .++.+........ .+..+.....+.. +.
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~-~~~~Iv~~~~~k~-~~i~v~~p~~~~~--------~~ 235 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFG-DPCEIVDVSAAKK-LEIKVISPVEDLI--------YD 235 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCC-CceEEEEcccCCc-ceEEEEecCCccc--------cc
Confidence 8888765555442 37999999999999999999997532 2555554443322 2222222111100 00
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccC-----
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLN----- 331 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g----- 331 (391)
... +......+.+.++++. .+|||+|||..||.++..|.+.+
T Consensus 236 ~~~-------------------------------~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~ 282 (814)
T COG1201 236 EEL-------------------------------WAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIE 282 (814)
T ss_pred cch-------------------------------hHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCcee
Confidence 000 0012223444444433 89999999999999999998864
Q ss_pred ----CCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 332 ----FNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 332 ----~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
.-+.+.|...++.+++ .++++++| ..|+-|||+-|.++
T Consensus 283 ~HHgSlSre~R~~vE~~lk~G~lravV~T-----------SSLELGIDiG~vdl 325 (814)
T COG1201 283 VHHGSLSRELRLEVEERLKEGELKAVVAT-----------SSLELGIDIGDIDL 325 (814)
T ss_pred eecccccHHHHHHHHHHHhcCCceEEEEc-----------cchhhccccCCceE
Confidence 2234778888888888 77888888 48999999987665
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.97 E-value=3.4e-30 Score=261.25 Aligned_cols=262 Identities=14% Similarity=0.154 Sum_probs=186.2
Q ss_pred CCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeC
Q psy6275 54 YPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITG 132 (391)
Q Consensus 54 ~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g 132 (391)
+||+ |+|+|.++++.+.+|+++++++|||+|||++|++|++.. ++.++|++|+++|+.|+...++...-.+..+.+
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~---~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s 97 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL---DGLTLVVSPLISLMKDQVDQLLANGVAAACLNS 97 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc---CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcC
Confidence 6887 999999999999999999999999999999999998754 678999999999999999999887555555555
Q ss_pred Cccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc--cchhHHHH---HHHhCCCCc
Q psy6275 133 DVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE--RGYVWEET---LILLSDNVR 196 (391)
Q Consensus 133 ~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~--~~~~~~~i---~~~~~~~~~ 196 (391)
.... ..+.+++++||+++............+++++|+||||++.+++ +.+.+..+ ...+ ++.+
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~-p~~~ 176 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLP 176 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHhC-CCCc
Confidence 4331 2346899999999873221112223479999999999998875 34444333 2233 4689
Q ss_pred EEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhh
Q psy6275 197 FVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAA 274 (391)
Q Consensus 197 ~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 274 (391)
++++|||++.. .++...++ ..++........++ ++...+...
T Consensus 177 ~v~lTAT~~~~~~~di~~~l~--l~~~~~~~~~~~r~-nl~~~v~~~--------------------------------- 220 (607)
T PRK11057 177 FMALTATADDTTRQDIVRLLG--LNDPLIQISSFDRP-NIRYTLVEK--------------------------------- 220 (607)
T ss_pred EEEEecCCChhHHHHHHHHhC--CCCeEEEECCCCCC-cceeeeeec---------------------------------
Confidence 99999999875 34555543 22333222222222 222111100
Q ss_pred ccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHH
Q psy6275 275 KAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFS 346 (391)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~ 346 (391)
......+...+....++++||||+|+++|+.++..|++.|+.+ .++|..+.+.|+
T Consensus 221 -----------------~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~ 283 (607)
T PRK11057 221 -----------------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQ 283 (607)
T ss_pred -----------------cchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 0123355666666667899999999999999999999876654 367888888887
Q ss_pred H-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 347 N-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 347 ~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
. .+++|++|+ ++++|||++ |-++|.+
T Consensus 284 ~g~~~VLVaT~-----------a~~~GIDip~V~~VI~~d~P~s 316 (607)
T PRK11057 284 RDDLQIVVATV-----------AFGMGINKPNVRFVVHFDIPRN 316 (607)
T ss_pred CCCCCEEEEec-----------hhhccCCCCCcCEEEEeCCCCC
Confidence 6 668888884 999999986 4566643
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.97 E-value=1.5e-30 Score=267.73 Aligned_cols=265 Identities=17% Similarity=0.199 Sum_probs=186.8
Q ss_pred cCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeee
Q psy6275 53 EYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT 131 (391)
Q Consensus 53 ~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~ 131 (391)
.+|+. |+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+|+++|+.++...+....-....+.
T Consensus 455 ~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~---~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~ 531 (1195)
T PLN03137 455 VFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC---PGITLVISPLVSLIQDQIMNLLQANIPAASLS 531 (1195)
T ss_pred HcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc---CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46886 999999999999999999999999999999999998764 67899999999999877777766554555566
Q ss_pred CCccc-------------CCCCCEEEEcHHHHHH--HHhcC---ccccCccceEEEecccccCccc--cchhHHHH--HH
Q psy6275 132 GDVTI-------------NPSSSCLIMTTEILRN--MLYRG---SEITREVGWVIFDEIHYMRDKE--RGYVWEET--LI 189 (391)
Q Consensus 132 g~~~~-------------~~~~~I~v~Tp~~l~~--~l~~~---~~~l~~~~~lViDE~h~~~~~~--~~~~~~~i--~~ 189 (391)
++... ....+|+++||+++.. .+.+. ......+.+|||||||++++|+ |.+.+..+ +.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr 611 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILK 611 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHH
Confidence 65432 1457899999999852 11111 1123458999999999999886 44545432 22
Q ss_pred HhCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHh
Q psy6275 190 LLSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL 267 (391)
Q Consensus 190 ~~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 267 (391)
..-+..+++++|||++.. +++...++. .. ..++.......++.+.++... .
T Consensus 612 ~~fp~vPilALTATAT~~V~eDI~~~L~l--~~-~~vfr~Sf~RpNL~y~Vv~k~-----------k------------- 664 (1195)
T PLN03137 612 QKFPNIPVLALTATATASVKEDVVQALGL--VN-CVVFRQSFNRPNLWYSVVPKT-----------K------------- 664 (1195)
T ss_pred HhCCCCCeEEEEecCCHHHHHHHHHHcCC--CC-cEEeecccCccceEEEEeccc-----------h-------------
Confidence 333468899999999765 556666542 22 233333222223333222100 0
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc-CCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHH
Q psy6275 268 ANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER-NLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEV 338 (391)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r 338 (391)
.....+.+.+... ...++||||+|+++|+.++..|...|+.+. ++|
T Consensus 665 -------------------------k~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR 719 (1195)
T PLN03137 665 -------------------------KCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQR 719 (1195)
T ss_pred -------------------------hHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHH
Confidence 0112344444432 246899999999999999999998877653 678
Q ss_pred HHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 339 KLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 339 ~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
..+.+.|.. .+.+|++|+ ++++|||++ |-+||..
T Consensus 720 ~~vqe~F~~Gei~VLVATd-----------AFGMGIDkPDVR~VIHydlPkS 760 (1195)
T PLN03137 720 AFVQKQWSKDEINIICATV-----------AFGMGINKPDVRFVIHHSLPKS 760 (1195)
T ss_pred HHHHHHHhcCCCcEEEEec-----------hhhcCCCccCCcEEEEcCCCCC
Confidence 888888877 678888885 999999996 5677744
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.97 E-value=3.1e-30 Score=262.00 Aligned_cols=264 Identities=14% Similarity=0.149 Sum_probs=190.9
Q ss_pred cCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeee
Q psy6275 53 EYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT 131 (391)
Q Consensus 53 ~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~ 131 (391)
.+||. |+++|.++|+.+.+|+|+++++|||+|||++|++|++. .++.++|++|+++|+.|+...++.....+..++
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~---~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~ 84 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALL---LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLN 84 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHH---cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEe
Confidence 37887 99999999999999999999999999999999999875 367899999999999999999998766667777
Q ss_pred CCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc--cchhHHHHHH---HhCCCC
Q psy6275 132 GDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE--RGYVWEETLI---LLSDNV 195 (391)
Q Consensus 132 g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~--~~~~~~~i~~---~~~~~~ 195 (391)
++... ....+|+++||+++............+++++|+||||++.+++ +.+.+..+.. .++ +.
T Consensus 85 s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~-~~ 163 (591)
T TIGR01389 85 STLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFP-QV 163 (591)
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCC-CC
Confidence 76542 2357899999999875443333345689999999999998765 3444444333 333 45
Q ss_pred cEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhh
Q psy6275 196 RFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDA 273 (391)
Q Consensus 196 ~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 273 (391)
+++++|||++.. .++..+++. ..+........+ .++...+...
T Consensus 164 ~vi~lTAT~~~~~~~~i~~~l~~--~~~~~~~~~~~r-~nl~~~v~~~-------------------------------- 208 (591)
T TIGR01389 164 PRIALTATADAETRQDIRELLRL--ADANEFITSFDR-PNLRFSVVKK-------------------------------- 208 (591)
T ss_pred CEEEEEeCCCHHHHHHHHHHcCC--CCCCeEecCCCC-CCcEEEEEeC--------------------------------
Confidence 699999999765 556776642 122222222122 2222222110
Q ss_pred hccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHH
Q psy6275 274 AKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVF 345 (391)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~ 345 (391)
.+....+.+.+....+.++||||+|++.|+.+++.|...|+++ .++|..+.+.|
T Consensus 209 ------------------~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F 270 (591)
T TIGR01389 209 ------------------NNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDF 270 (591)
T ss_pred ------------------CCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHH
Confidence 0122355566666556799999999999999999998876644 36788888877
Q ss_pred HH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCccc
Q psy6275 346 SN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYGL 384 (391)
Q Consensus 346 ~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~~ 384 (391)
.. .+.++++|+ ++++|||++ |.++|...
T Consensus 271 ~~g~~~vlVaT~-----------a~~~GID~p~v~~VI~~~~p~s~ 305 (591)
T TIGR01389 271 LYDDVKVMVATN-----------AFGMGIDKPNVRFVIHYDMPGNL 305 (591)
T ss_pred HcCCCcEEEEec-----------hhhccCcCCCCCEEEEcCCCCCH
Confidence 76 668888774 999999976 56666543
No 49
>KOG0951|consensus
Probab=99.97 E-value=1.3e-30 Score=263.08 Aligned_cols=287 Identities=22% Similarity=0.289 Sum_probs=214.8
Q ss_pred CCC-CcHHHHHHHHHHhc-CCcEEEEecCCcchHHHHHHHHHHHHhc-----------CCeEEEEcccHHHHHHHHHHHH
Q psy6275 55 PFV-LDPFQKEAILCIEN-NQSVLVSAHTSAGKTVVAEYAIASSLKQ-----------SQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 55 ~~~-~~~~Q~~~i~~i~~-~~~~li~apTGsGKT~~~~~~~~~~l~~-----------~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
|.+ ++++|....++.+. ..|+++|||||+|||..+++.+++.+.. +.+++|++|.++|+.++...|.
T Consensus 306 g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 306 GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 444 99999999997654 5799999999999999999999998854 3589999999999999999999
Q ss_pred Hhcc----cceeeeCCcccC----CCCCEEEEcHHHHHHHHhcC--ccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 122 EQFK----DVGLITGDVTIN----PSSSCLIMTTEILRNMLYRG--SEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~~--~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
+.+. .|.-.+|+.... ..++|+|+|||...-.-.+. ....+-++++|+||+|.+.| .+|+.++.+..+.
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD-dRGpvLESIVaRt 464 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD-DRGPVLESIVART 464 (1674)
T ss_pred hhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc-ccchHHHHHHHHH
Confidence 8887 555688876643 36899999999875443332 23456789999999998766 5899998777654
Q ss_pred -------CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHH
Q psy6275 192 -------SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAM 264 (391)
Q Consensus 192 -------~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 264 (391)
....+++++|||+||-.+++.+++... ...+.+...+||+|+.|-++.+.. .+-...+
T Consensus 465 ~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~fd~syRpvPL~qq~Igi~e--------------k~~~~~~ 529 (1674)
T KOG0951|consen 465 FRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYFDSSYRPVPLKQQYIGITE--------------KKPLKRF 529 (1674)
T ss_pred HHHhhhcccCceeeeecccCCchhhhHHHhccCc-ccccccCcccCcCCccceEecccc--------------CCchHHH
Confidence 247899999999999999999998765 678889999999999999885442 2223334
Q ss_pred HHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHHHH
Q psy6275 265 NVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDV 344 (391)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~~~ 344 (391)
+.|+. .-+-+.+...+..++||||.+|+++-+.|..+++...... -+..+
T Consensus 530 qamNe--------------------------~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~d----tls~f 579 (1674)
T KOG0951|consen 530 QAMNE--------------------------ACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEED----TLSRF 579 (1674)
T ss_pred HHHHH--------------------------HHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhh----HHHHH
Confidence 44442 1122233445557999999999999999999997654332 22222
Q ss_pred HHHH--hhhcchhhccCcchHhHHHHHHhhhhhccCCCCcccccc
Q psy6275 345 FSNA--MDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQS 387 (391)
Q Consensus 345 ~~~~--~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~~ 387 (391)
.++. ..-+.-+..+......+.++|..|++||||||.+.+|..
T Consensus 580 mre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~ 624 (1674)
T KOG0951|consen 580 MREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDREL 624 (1674)
T ss_pred HhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHH
Confidence 2221 111111222333456789999999999999999998864
No 50
>KOG0341|consensus
Probab=99.97 E-value=1.8e-32 Score=247.38 Aligned_cols=287 Identities=16% Similarity=0.215 Sum_probs=223.6
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-----------hcCCeEE
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-----------KQSQRVI 104 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-----------~~~~~vl 104 (391)
+|.++.++..++..+++.|+. |||+|.+.+|.+++|++.+-.|-||||||++|.+|++... ..++-.|
T Consensus 171 sF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gL 250 (610)
T KOG0341|consen 171 SFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGL 250 (610)
T ss_pred hhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeE
Confidence 788899999999999999996 9999999999999999999999999999999988876533 2378999
Q ss_pred EEcccHHHHHHHHHHHHHhcc----------cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 105 YTTPIKALSNQKYREFEEQFK----------DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~----------~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
|++|+|+|+.|++.-+..++. +..+..|+.+.. ...+|+|+||++|.+++.+....+.-.+++
T Consensus 251 iicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL 330 (610)
T KOG0341|consen 251 IICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYL 330 (610)
T ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHh
Confidence 999999999999988887765 445577777653 467899999999999999998888899999
Q ss_pred EEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCe
Q psy6275 168 IFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGI 246 (391)
Q Consensus 168 ViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~ 246 (391)
.+||||+|.|.+|...+..++..+...+|.++||||+|.. +.|+. ...-.|+.+-....-..++.
T Consensus 331 ~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAk---SALVKPvtvNVGRAGAAsld----------- 396 (610)
T KOG0341|consen 331 TLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAK---SALVKPVTVNVGRAGAASLD----------- 396 (610)
T ss_pred hhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHH---hhcccceEEecccccccchh-----------
Confidence 9999999999999999999999999999999999999877 54555 33334444433322211110
Q ss_pred eeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHH
Q psy6275 247 HLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQ 326 (391)
Q Consensus 247 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~ 326 (391)
.++......+ .+++..+++-|.+.. .++||||..+.+++.+.++
T Consensus 397 -------------------ViQevEyVkq----------------EaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEY 440 (610)
T KOG0341|consen 397 -------------------VIQEVEYVKQ----------------EAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEY 440 (610)
T ss_pred -------------------HHHHHHHHHh----------------hhhhhhHHHHhccCC-CceEEEeccccChHHHHHH
Confidence 0010000000 144556666555544 5999999999999999999
Q ss_pred hhccCC--------CChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCccc
Q psy6275 327 MAKLNF--------NETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYGL 384 (391)
Q Consensus 327 L~~~g~--------~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~~ 384 (391)
|--.|+ +..++|..-.+.|+. ..++|++|| +.+.|.||+ +=+||..+
T Consensus 441 LLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD-----------VASKGLDFp~iqHVINyDMP~eI 502 (610)
T KOG0341|consen 441 LLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD-----------VASKGLDFPDIQHVINYDMPEEI 502 (610)
T ss_pred HHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEec-----------chhccCCCccchhhccCCChHHH
Confidence 976544 445778777777777 678889886 899999996 35777543
No 51
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=2e-29 Score=267.99 Aligned_cols=264 Identities=16% Similarity=0.122 Sum_probs=181.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
..|++|+++|.++++.+..|++++++||||+|||..++.++......+.+++|++||++|+.|+++.++.+.. .+.
T Consensus 76 ~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~ 155 (1176)
T PRK09401 76 KTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVK 155 (1176)
T ss_pred hcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEE
Confidence 3588999999999999999999999999999999754443333334578999999999999999999999987 233
Q ss_pred eeeCCccc-------------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc-----------ccc-hh
Q psy6275 129 LITGDVTI-------------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK-----------ERG-YV 183 (391)
Q Consensus 129 ~~~g~~~~-------------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-----------~~~-~~ 183 (391)
.+.|+... ...++|+|+||+++.+++. ......++++|+||||+++++ ++. ..
T Consensus 156 ~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~ 233 (1176)
T PRK09401 156 ILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEED 233 (1176)
T ss_pred EEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHH
Confidence 34443321 2358999999999998775 233456999999999999863 342 34
Q ss_pred HHHHHHHhCC------------------------CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeC--CCCcCceE
Q psy6275 184 WEETLILLSD------------------------NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTD--YRPTPLQH 236 (391)
Q Consensus 184 ~~~i~~~~~~------------------------~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~--~~~~~i~~ 236 (391)
++.++..++. ..|++++|||+++. ... ..+. +...+.... ....++.+
T Consensus 234 i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~-~l~~----~ll~~~v~~~~~~~rnI~~ 308 (1176)
T PRK09401 234 IEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV-KLFR----ELLGFEVGSPVFYLRNIVD 308 (1176)
T ss_pred HHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH-HHhh----ccceEEecCcccccCCceE
Confidence 5555554443 68999999999753 211 1111 111111111 11224555
Q ss_pred eeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcc
Q psy6275 237 YLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFS 316 (391)
Q Consensus 237 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t 316 (391)
.++.++ ++...+.+++...+ .++||||++
T Consensus 309 ~yi~~~--------------------------------------------------~k~~~L~~ll~~l~-~~~LIFv~t 337 (1176)
T PRK09401 309 SYIVDE--------------------------------------------------DSVEKLVELVKRLG-DGGLIFVPS 337 (1176)
T ss_pred EEEEcc--------------------------------------------------cHHHHHHHHHHhcC-CCEEEEEec
Confidence 554321 11224445554444 589999999
Q ss_pred hhh---HHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc-------CCCC
Q psy6275 317 KKD---CEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH-------GVKP 381 (391)
Q Consensus 317 ~~~---~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h-------~~~~ 381 (391)
++. |+.+++.|+..|+++. ..+..+ +.|++ .+++|++|+. -+++++||||++| .|+|
T Consensus 338 ~~~~~~ae~l~~~L~~~gi~v~~~hg~l~~~l-~~F~~G~~~VLVatas-------~tdv~aRGIDiP~~IryVI~y~vP 409 (1176)
T PRK09401 338 DKGKEYAEELAEYLEDLGINAELAISGFERKF-EKFEEGEVDVLVGVAS-------YYGVLVRGIDLPERIRYAIFYGVP 409 (1176)
T ss_pred ccChHHHHHHHHHHHHCCCcEEEEeCcHHHHH-HHHHCCCCCEEEEecC-------CCCceeecCCCCcceeEEEEeCCC
Confidence 888 9999999999998865 223334 66665 7789998531 1359999999976 5777
Q ss_pred c
Q psy6275 382 Y 382 (391)
Q Consensus 382 ~ 382 (391)
.
T Consensus 410 ~ 410 (1176)
T PRK09401 410 K 410 (1176)
T ss_pred C
Confidence 5
No 52
>KOG0350|consensus
Probab=99.97 E-value=4.1e-30 Score=238.93 Aligned_cols=265 Identities=20% Similarity=0.258 Sum_probs=183.2
Q ss_pred CCccCCCC-CcHHHHHHHHHHh---------cCCcEEEEecCCcchHHHHHHHHHHHHhcC----CeEEEEcccHHHHHH
Q psy6275 50 PAREYPFV-LDPFQKEAILCIE---------NNQSVLVSAHTSAGKTVVAEYAIASSLKQS----QRVIYTTPIKALSNQ 115 (391)
Q Consensus 50 ~~~~~~~~-~~~~Q~~~i~~i~---------~~~~~li~apTGsGKT~~~~~~~~~~l~~~----~~vlvl~P~~~L~~q 115 (391)
.+..++.. .+|+|...+|.++ ..+++.+.||||||||++|.+|+.+.+... -|++|++|+++|+.|
T Consensus 151 ~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 151 LLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ 230 (620)
T ss_pred HHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH
Confidence 36667776 8999999999872 258999999999999999999999998654 589999999999999
Q ss_pred HHHHHHHhccc----ceeeeCCcccCC------------CCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCcc
Q psy6275 116 KYREFEEQFKD----VGLITGDVTINP------------SSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRDK 178 (391)
Q Consensus 116 ~~~~~~~~~~~----v~~~~g~~~~~~------------~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~~ 178 (391)
+++.|.++... |+.+.|...... ..+|+|+||++|.+++.+ ....+++++++||||||+|++.
T Consensus 231 V~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~q 310 (620)
T KOG0350|consen 231 VYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQ 310 (620)
T ss_pred HHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHH
Confidence 99999999984 444555544311 348999999999999985 4567899999999999999988
Q ss_pred ccchhHHHHHHHhC----------------------------------CCCcEEEEcccCCCh-HHHHHHhccccCCCee
Q psy6275 179 ERGYVWEETLILLS----------------------------------DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCH 223 (391)
Q Consensus 179 ~~~~~~~~i~~~~~----------------------------------~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~ 223 (391)
.|...+..++.+.. +..+.+.+|||+... ..+.++ . ...|..
T Consensus 311 sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l-~--l~~Prl 387 (620)
T KOG0350|consen 311 SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL-T--LHIPRL 387 (620)
T ss_pred HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh-h--cCCCce
Confidence 77777666655431 123356677777654 333332 1 122211
Q ss_pred Eeee-----CC-CCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHH
Q psy6275 224 VVYT-----DY-RPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFK 297 (391)
Q Consensus 224 v~~~-----~~-~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (391)
..+. .+ -|..+.+..+.+... -+-..
T Consensus 388 ~~v~~~~~~ryslp~~l~~~~vv~~~~------------------------------------------------~kpl~ 419 (620)
T KOG0350|consen 388 FHVSKPLIGRYSLPSSLSHRLVVTEPK------------------------------------------------FKPLA 419 (620)
T ss_pred EEeecccceeeecChhhhhceeecccc------------------------------------------------cchHh
Confidence 1111 11 122333333322210 01124
Q ss_pred HHHHHHHcCCCcEEEEEcchhhHHHHHHHhh-cc---CCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 298 IVKMIMERNLAPVIVFSFSKKDCEIYAMQMA-KL---NFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 298 l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~-~~---g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
+...+...+..++|+|+++...+..++..|. .. ..+. ..+|....+.|+. .+.+|+++
T Consensus 420 ~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcS--------- 490 (620)
T KOG0350|consen 420 VYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICS--------- 490 (620)
T ss_pred HHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEeh---------
Confidence 5566666777899999999999999999997 22 1111 2445555555555 66666665
Q ss_pred HHHHHHhhhhhc
Q psy6275 365 ILPLLRRGIGIH 376 (391)
Q Consensus 365 ~~~~l~~GI~~~ 376 (391)
|+++||||+.
T Consensus 491 --D~laRGiDv~ 500 (620)
T KOG0350|consen 491 --DALARGIDVN 500 (620)
T ss_pred --hhhhcCCccc
Confidence 5999999984
No 53
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=1.4e-28 Score=255.85 Aligned_cols=260 Identities=22% Similarity=0.235 Sum_probs=185.1
Q ss_pred cCCCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q psy6275 47 KEKPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~ 120 (391)
.......++|+||+.|.+||+.+.++ ++.+++||||+|||.+|+.+++..+..+.+++|++||++|+.|++..+
T Consensus 441 ~~~~~~~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f 520 (926)
T TIGR00580 441 QQEFEDSFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETF 520 (926)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHH
Confidence 34455668999999999999998764 789999999999999999999999888999999999999999999999
Q ss_pred HHhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHH
Q psy6275 121 EEQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185 (391)
Q Consensus 121 ~~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~ 185 (391)
++.++ ++..++|.... ..+++|+|+||..+ .....+++++++|+||+|++ +....
T Consensus 521 ~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrf-----gv~~~ 590 (926)
T TIGR00580 521 KERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRF-----GVKQK 590 (926)
T ss_pred HHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeeccccc-----chhHH
Confidence 99876 44556665431 23579999999532 23446789999999999985 44445
Q ss_pred HHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHH
Q psy6275 186 ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMN 265 (391)
Q Consensus 186 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 265 (391)
..+..++.++++++||||+.+. .+...+.. ..++..+........+++.++.... ..
T Consensus 591 ~~L~~~~~~~~vL~~SATpipr-tl~~~l~g-~~d~s~I~~~p~~R~~V~t~v~~~~--------------~~------- 647 (926)
T TIGR00580 591 EKLKELRTSVDVLTLSATPIPR-TLHMSMSG-IRDLSIIATPPEDRLPVRTFVMEYD--------------PE------- 647 (926)
T ss_pred HHHHhcCCCCCEEEEecCCCHH-HHHHHHhc-CCCcEEEecCCCCccceEEEEEecC--------------HH-------
Confidence 5666677789999999997432 23222211 1222222222222224444443111 00
Q ss_pred HhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc----------CCCCh
Q psy6275 266 VLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL----------NFNET 335 (391)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~----------g~~~~ 335 (391)
.....+.+.+. .+++++|||++++.++.+++.|.+. |-...
T Consensus 648 ---------------------------~i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~ 698 (926)
T TIGR00580 648 ---------------------------LVREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTE 698 (926)
T ss_pred ---------------------------HHHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCH
Confidence 00112223232 2468999999999999999999874 22234
Q ss_pred HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 336 EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 336 ~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
.+|..+++.|++ ..++|++|+ ++++|||++.++
T Consensus 699 ~eRe~im~~F~~Gk~~ILVaT~-----------iie~GIDIp~v~ 732 (926)
T TIGR00580 699 NELEEVMLEFYKGEFQVLVCTT-----------IIETGIDIPNAN 732 (926)
T ss_pred HHHHHHHHHHHcCCCCEEEECC-----------hhhcccccccCC
Confidence 778888888887 678888885 999999998654
No 54
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=2.9e-28 Score=258.66 Aligned_cols=271 Identities=19% Similarity=0.233 Sum_probs=191.8
Q ss_pred CCCcccccccccCCCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
.++.+.+.......+...++|+||+.|.+||+.+.++ ++++++|+||+|||.+++.++...+..+.+++|++||
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT 658 (1147)
T PRK10689 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPT 658 (1147)
T ss_pred cCCCCCCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 3444444445566778889999999999999998776 8999999999999999998888888889999999999
Q ss_pred HHHHHHHHHHHHHhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc
Q psy6275 110 KALSNQKYREFEEQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~ 174 (391)
++|+.|++..+++.+. .+..++|..+. ....+|+|+||+.+. ....+.+++++|+||+|+
T Consensus 659 ~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahr 733 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHR 733 (1147)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhh
Confidence 9999999999998765 34456665432 135799999997432 233467999999999998
Q ss_pred cCccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc
Q psy6275 175 MRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
+ +......+..++.++|+++||||+.+. ..++.. ...++..+........++++++.....
T Consensus 734 f-----G~~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~---gl~d~~~I~~~p~~r~~v~~~~~~~~~---------- 795 (1147)
T PRK10689 734 F-----GVRHKERIKAMRADVDILTLTATPIPRTLNMAMS---GMRDLSIIATPPARRLAVKTFVREYDS---------- 795 (1147)
T ss_pred c-----chhHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHh---hCCCcEEEecCCCCCCCceEEEEecCc----------
Confidence 7 333344556677889999999997543 333221 122343333322222344444321110
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc--C
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL--N 331 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~--g 331 (391)
. .....+...+. .+++++||||+++.++.+++.|.+. +
T Consensus 796 ----~----------------------------------~~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~ 835 (1147)
T PRK10689 796 ----L----------------------------------VVREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPE 835 (1147)
T ss_pred ----H----------------------------------HHHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCC
Confidence 0 00112333333 2458999999999999999999875 2
Q ss_pred --------CCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 332 --------FNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 332 --------~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
-...++|..++..|++ ..++|++|+ ++++|||++++++
T Consensus 836 ~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----------IierGIDIP~v~~ 882 (1147)
T PRK10689 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----------IIETGIDIPTANT 882 (1147)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----------hhhcccccccCCE
Confidence 2234678888887777 778888885 9999999987654
No 55
>PRK14701 reverse gyrase; Provisional
Probab=99.96 E-value=1.9e-28 Score=265.77 Aligned_cols=271 Identities=13% Similarity=0.073 Sum_probs=190.9
Q ss_pred CCCcc-CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 49 KPARE-YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 49 ~~~~~-~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
..+++ +||+|+++|.++++.+.+|++++++||||+|||++++.+.+....++.+++|++||++|+.|+++.++.+..
T Consensus 70 ~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 70 EFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred HHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 34444 789999999999999999999999999999999976666655545678999999999999999999998765
Q ss_pred ----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc-----------c
Q psy6275 126 ----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK-----------E 179 (391)
Q Consensus 126 ----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-----------~ 179 (391)
.+..++|+.+. ..+++|+|+||+++...+.... ..+++++|+||||+|+++ +
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~--~~~i~~iVVDEAD~ml~~~knid~~L~llG 227 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK--HLKFDFIFVDDVDAFLKASKNIDRSLQLLG 227 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh--hCCCCEEEEECceeccccccccchhhhcCC
Confidence 33456676542 2257999999999887665422 257999999999999863 4
Q ss_pred cchhHHH----HHH----------------------HhCCCCc-EEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCc
Q psy6275 180 RGYVWEE----TLI----------------------LLSDNVR-FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPT 232 (391)
Q Consensus 180 ~~~~~~~----i~~----------------------~~~~~~~-~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~ 232 (391)
|...+.. ++. .++...| .+++|||++...+...++. ++..+.....++.
T Consensus 228 F~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~----~~l~f~v~~~~~~ 303 (1638)
T PRK14701 228 FYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYR----ELLGFEVGSGRSA 303 (1638)
T ss_pred ChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhh----cCeEEEecCCCCC
Confidence 4444432 211 1234455 5679999975433444432 3333333333322
Q ss_pred --CceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcE
Q psy6275 233 --PLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPV 310 (391)
Q Consensus 233 --~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 310 (391)
.+.+.++.+..+ . ...+.+.+... +.++
T Consensus 304 lr~i~~~yi~~~~~------------------------------------------------~-k~~L~~ll~~~-g~~g 333 (1638)
T PRK14701 304 LRNIVDVYLNPEKI------------------------------------------------I-KEHVRELLKKL-GKGG 333 (1638)
T ss_pred CCCcEEEEEECCHH------------------------------------------------H-HHHHHHHHHhC-CCCe
Confidence 355554432210 0 12444555544 3589
Q ss_pred EEEEcchhh---HHHHHHHhhccCCCCh---HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc------
Q psy6275 311 IVFSFSKKD---CEIYAMQMAKLNFNET---EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH------ 377 (391)
Q Consensus 311 iIF~~t~~~---~~~la~~L~~~g~~~~---~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h------ 377 (391)
||||+|++. |+.+++.|.+.|+++. ..|....+.|++ ..++|++|+... ++++||||++|
T Consensus 334 IVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~R~~~l~~F~~G~~~VLVaT~s~~-------gvaaRGIDiP~~Vryvi 406 (1638)
T PRK14701 334 LIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAKNKKGFDLFEEGEIDYLIGVATYY-------GTLVRGLDLPERIRFAV 406 (1638)
T ss_pred EEEEeccccchHHHHHHHHHHHCCCeEEEecchHHHHHHHHHcCCCCEEEEecCCC-------CeeEecCccCCccCEEE
Confidence 999999886 5899999999998854 456677777776 779999995322 38999999986
Q ss_pred -CCCCc
Q psy6275 378 -GVKPY 382 (391)
Q Consensus 378 -~~~~~ 382 (391)
.|||.
T Consensus 407 ~~~~Pk 412 (1638)
T PRK14701 407 FYGVPK 412 (1638)
T ss_pred EeCCCC
Confidence 68887
No 56
>KOG0344|consensus
Probab=99.96 E-value=3.8e-29 Score=237.49 Aligned_cols=279 Identities=20% Similarity=0.247 Sum_probs=211.3
Q ss_pred ccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--------CCeEEEEcccHHH
Q psy6275 42 PLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--------SQRVIYTTPIKAL 112 (391)
Q Consensus 42 ~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--------~~~vlvl~P~~~L 112 (391)
.....+..++...+|. |+++|.+|+|.+..+++++.+||||||||++|.+|++..+.. +.+++|+.|+++|
T Consensus 142 ~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreL 221 (593)
T KOG0344|consen 142 SMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTREL 221 (593)
T ss_pred hhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHH
Confidence 3445567788899997 999999999999999999999999999999999999998843 4689999999999
Q ss_pred HHHHHHHHHHhc--c----cceeeeCCcc--------cCCCCCEEEEcHHHHHHHHhcCc--cccCccceEEEecccccC
Q psy6275 113 SNQKYREFEEQF--K----DVGLITGDVT--------INPSSSCLIMTTEILRNMLYRGS--EITREVGWVIFDEIHYMR 176 (391)
Q Consensus 113 ~~q~~~~~~~~~--~----~v~~~~g~~~--------~~~~~~I~v~Tp~~l~~~l~~~~--~~l~~~~~lViDE~h~~~ 176 (391)
+.|++.++.++. . .+..+..... .....++++.||-++...+.... ..++.+.++|+||+|.+.
T Consensus 222 a~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344|consen 222 AAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhh
Confidence 999999999998 3 2222222211 12246899999999999988765 678899999999999998
Q ss_pred cc-ccchhHHHHHHHhC-CCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCC--cCceEeeccCCCCCeeeeecC
Q psy6275 177 DK-ERGYVWEETLILLS-DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRP--TPLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 177 ~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~--~~i~~~~~~~~~~~~~~~v~~ 252 (391)
+. .+...++.++.... ++..+-+||||.+.. +.+|....+.++..+....... ..++|..+.++..
T Consensus 302 e~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~--VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse-------- 371 (593)
T KOG0344|consen 302 EPEFFVEQLADIYSACQSPDIRVALFSATISVY--VEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSE-------- 371 (593)
T ss_pred ChhhHHHHHHHHHHHhcCcchhhhhhhccccHH--HHHHHHHhhccceeEEEecchhHhhhhhhhheeeecc--------
Confidence 87 67777777777653 578888999998765 6666666666666665554322 2455555554432
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhh-ccC
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMA-KLN 331 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~-~~g 331 (391)
..++..+.+.+...-..+++||+.+.++|..|...|. -.+
T Consensus 372 ---------------------------------------~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~ 412 (593)
T KOG0344|consen 372 ---------------------------------------KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDN 412 (593)
T ss_pred ---------------------------------------hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccC
Confidence 1234455555554445689999999999999999993 223
Q ss_pred CC--------ChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 332 FN--------ETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 332 ~~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
++ ....|+..++.|+. .+.+|++| ++++|||||+.++|
T Consensus 413 i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----------dll~RGiDf~gvn~ 459 (593)
T KOG0344|consen 413 INVDVIHGERSQKQRDETMERFRIGKIWVLICT-----------DLLARGIDFKGVNL 459 (593)
T ss_pred cceeeEecccchhHHHHHHHHHhccCeeEEEeh-----------hhhhccccccCcce
Confidence 32 33567777777777 77888877 49999999988776
No 57
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=6.4e-28 Score=257.62 Aligned_cols=261 Identities=26% Similarity=0.311 Sum_probs=175.2
Q ss_pred EEecCCcchHHHHHHHHHHHHh-------------cCCeEEEEcccHHHHHHHHHHHHHhc---------------c-cc
Q psy6275 77 VSAHTSAGKTVVAEYAIASSLK-------------QSQRVIYTTPIKALSNQKYREFEEQF---------------K-DV 127 (391)
Q Consensus 77 i~apTGsGKT~~~~~~~~~~l~-------------~~~~vlvl~P~~~L~~q~~~~~~~~~---------------~-~v 127 (391)
|+||||||||++|.+|++..+. .+.++|||+|+++|+.|+.+.++... + .+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999888763 24689999999999999999886411 1 56
Q ss_pred eeeeCCcccC-------CCCCEEEEcHHHHHHHHhcC-ccccCccceEEEecccccCccccchhHHHHHH----HhCCCC
Q psy6275 128 GLITGDVTIN-------PSSSCLIMTTEILRNMLYRG-SEITREVGWVIFDEIHYMRDKERGYVWEETLI----LLSDNV 195 (391)
Q Consensus 128 ~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~-~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~----~~~~~~ 195 (391)
+..+|+.+.+ ..++|+|+||+++..++.+. ...++++++||+||+|.+.+..+|..+...+. .++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 7799987642 35799999999999877543 35689999999999999987777776654444 445679
Q ss_pred cEEEEcccCCChHHHHHHhccccCCCeeEeeeC-CCCcCceEeeccCCC-CCeeeeecCchhhhhchHHHHHHhhhhhhh
Q psy6275 196 RFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD-YRPTPLQHYLFPNGG-DGIHLIVDDNKFKEHNYQVAMNVLANAGDA 273 (391)
Q Consensus 196 ~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~-~~~~~i~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 273 (391)
|+|++|||+++.+++++|++. ..++.++... .++..++.+ ++... ..+.. .+.. ........
T Consensus 161 QrIgLSATI~n~eevA~~L~g--~~pv~Iv~~~~~r~~~l~v~-vp~~d~~~~~~-~~~~-~~~~~~~~----------- 224 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGG--DRPVTVVNPPAMRHPQIRIV-VPVANMDDVSS-VASG-TGEDSHAG----------- 224 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcC--CCCEEEECCCCCcccceEEE-EecCchhhccc-cccc-cccccchh-----------
Confidence 999999999998999999863 2355554332 223344422 22111 00000 0000 00000000
Q ss_pred hccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc-----------------------
Q psy6275 274 AKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL----------------------- 330 (391)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~----------------------- 330 (391)
+ ....++.....++..+. ...++|||||||+.|+.++..|++.
T Consensus 225 ---------r---~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (1490)
T PRK09751 225 ---------R---EGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSG 290 (1490)
T ss_pred ---------h---hhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccc
Confidence 0 00000011112333322 2458999999999999999998753
Q ss_pred ------------------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 331 ------------------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 331 ------------------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
|.-+.++|..+++.|++ .++++++|+ .+++||||.+.
T Consensus 291 ~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATs-----------sLELGIDIg~V 346 (1490)
T PRK09751 291 ATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATS-----------SLELGIDMGAV 346 (1490)
T ss_pred cchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCc-----------HHHccCCcccC
Confidence 11224788899999998 678888884 99999999753
No 58
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=8.4e-28 Score=243.87 Aligned_cols=273 Identities=14% Similarity=0.115 Sum_probs=169.7
Q ss_pred CCCCCcHHHHHHHHHHhcCC-cEEEEecCCcchHHHHHHHHHHHH--hc-CCeEEEEcccHHHHHHHHHHHHHhccc---
Q psy6275 54 YPFVLDPFQKEAILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSL--KQ-SQRVIYTTPIKALSNQKYREFEEQFKD--- 126 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~-~~li~apTGsGKT~~~~~~~~~~l--~~-~~~vlvl~P~~~L~~q~~~~~~~~~~~--- 126 (391)
.||+|+|||.++++.+..|+ ++++.+|||||||.++..+.+... .. ..++++++|+|+|+.|+++.+.++.+.
T Consensus 12 ~G~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~ 91 (844)
T TIGR02621 12 HGYSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPD 91 (844)
T ss_pred hCCCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcc
Confidence 58889999999999999998 577889999999996654443221 11 235666789999999999999888752
Q ss_pred ------------------------ceeeeCCcccC-------CCCCEEEEcHHHHHHHHhc---------Ccc---ccCc
Q psy6275 127 ------------------------VGLITGDVTIN-------PSSSCLIMTTEILRNMLYR---------GSE---ITRE 163 (391)
Q Consensus 127 ------------------------v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~---------~~~---~l~~ 163 (391)
+..++|+...+ ..++|+|+|++.+.+..-. .+. .+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~ 171 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQ 171 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhcc
Confidence 34467876643 3578999997655432110 001 2678
Q ss_pred cceEEEecccccCccccchhHHHHHHHh--CC---CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCC--cCce
Q psy6275 164 VGWVIFDEIHYMRDKERGYVWEETLILL--SD---NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRP--TPLQ 235 (391)
Q Consensus 164 ~~~lViDE~h~~~~~~~~~~~~~i~~~~--~~---~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~--~~i~ 235 (391)
+.++|+|||| +++++...+..|+..+ +. ..|+++||||++.. ..+...+. .++..+.....+. ..+.
T Consensus 172 v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~---~~p~~i~V~~~~l~a~ki~ 246 (844)
T TIGR02621 172 DALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLS---AEDYKHPVLKKRLAAKKIV 246 (844)
T ss_pred ceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHc---cCCceeecccccccccceE
Confidence 9999999999 5677888888888864 33 26999999999865 44443332 2333222211111 1223
Q ss_pred EeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEc
Q psy6275 236 HYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSF 315 (391)
Q Consensus 236 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~ 315 (391)
+++ .++. . .... ..+..+...+. ..++++|||||
T Consensus 247 q~v-~v~~---------e----~Kl~-------------------------------~lv~~L~~ll~-e~g~~vLVF~N 280 (844)
T TIGR02621 247 KLV-PPSD---------E----KFLS-------------------------------TMVKELNLLMK-DSGGAILVFCR 280 (844)
T ss_pred EEE-ecCh---------H----HHHH-------------------------------HHHHHHHHHHh-hCCCcEEEEEC
Confidence 321 1110 0 0000 01112222222 34568999999
Q ss_pred chhhHHHHHHHhhccCC------CChHHHH-----HHHHHHHHHh-hhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 316 SKKDCEIYAMQMAKLNF------NETEEVK-----LVDDVFSNAM-DVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 316 t~~~~~~la~~L~~~g~------~~~~~r~-----~~~~~~~~~~-~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
|++.|+.+++.|.+.++ ....+|. .+++.|++.. ..-.+.......+++.|+++++||||..
T Consensus 281 Tv~~Aq~L~~~L~~~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~ 354 (844)
T TIGR02621 281 TVKHVRKVFAKLPKEKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA 354 (844)
T ss_pred CHHHHHHHHHHHHhcCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc
Confidence 99999999999998765 2235565 4455565410 0000000011234566679999999963
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.95 E-value=3.9e-27 Score=241.54 Aligned_cols=259 Identities=19% Similarity=0.228 Sum_probs=178.4
Q ss_pred CCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q psy6275 49 KPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEE 122 (391)
Q Consensus 49 ~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~ 122 (391)
.....++|+||++|.++++.+.++ .+.+++||||||||.+|++|++..+..+.+++|++||++|+.|+++.+++
T Consensus 253 ~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 253 KFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHH
Confidence 345667999999999999998765 48999999999999999999999999999999999999999999999999
Q ss_pred hcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHH
Q psy6275 123 QFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET 187 (391)
Q Consensus 123 ~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i 187 (391)
++. ++.+++|+... ...++|+|+||+.+.. ...+.+++++|+||+|++. ......
T Consensus 333 l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg-----~~qr~~ 402 (681)
T PRK10917 333 LLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFG-----VEQRLA 402 (681)
T ss_pred HHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhh-----HHHHHH
Confidence 885 56778998762 2368999999987642 3347799999999999863 333334
Q ss_pred HHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeee-CCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHH
Q psy6275 188 LILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT-DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNV 266 (391)
Q Consensus 188 ~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~-~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 266 (391)
+......+++++||||+... .++-.+.. .-...++.. .....++..++..... ..
T Consensus 403 l~~~~~~~~iL~~SATp~pr-tl~~~~~g--~~~~s~i~~~p~~r~~i~~~~~~~~~----------------~~----- 458 (681)
T PRK10917 403 LREKGENPHVLVMTATPIPR-TLAMTAYG--DLDVSVIDELPPGRKPITTVVIPDSR----------------RD----- 458 (681)
T ss_pred HHhcCCCCCEEEEeCCCCHH-HHHHHHcC--CCceEEEecCCCCCCCcEEEEeCccc----------------HH-----
Confidence 44445568999999997433 22221111 111111111 1111234443332110 00
Q ss_pred hhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcch--------hhHHHHHHHhhcc--------
Q psy6275 267 LANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSK--------KDCEIYAMQMAKL-------- 330 (391)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~--------~~~~~la~~L~~~-------- 330 (391)
..+..+.+.+ ..+.+++|||+.. ..++.+++.|.+.
T Consensus 459 --------------------------~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~ 510 (681)
T PRK10917 459 --------------------------EVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGL 510 (681)
T ss_pred --------------------------HHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEE
Confidence 0011222222 2356999999954 4556677777654
Q ss_pred --CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 331 --NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 331 --g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
|-....+|..+++.|++ .+++|++|+ ++++|||++++++
T Consensus 511 lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----------vie~GiDip~v~~ 552 (681)
T PRK10917 511 LHGRMKPAEKDAVMAAFKAGEIDILVATT-----------VIEVGVDVPNATV 552 (681)
T ss_pred EeCCCCHHHHHHHHHHHHcCCCCEEEECc-----------ceeeCcccCCCcE
Confidence 12234788888888888 668888884 9999999987544
No 60
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.95 E-value=1.6e-27 Score=253.79 Aligned_cols=258 Identities=16% Similarity=0.119 Sum_probs=174.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhccc-----
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKD----- 126 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~----- 126 (391)
..|+.|+++|+.+++.+..|++++++||||+|||. |.+++...+ ..+.+++|++||++|+.|+++.+..+...
T Consensus 74 ~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 74 AVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred hcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 35678999999999999999999999999999997 444544433 45789999999999999999999998752
Q ss_pred --ceeeeCCcccC-----------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc-----------ccch
Q psy6275 127 --VGLITGDVTIN-----------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK-----------ERGY 182 (391)
Q Consensus 127 --v~~~~g~~~~~-----------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-----------~~~~ 182 (391)
++.++|+.+.. ..++|+|+||+++...+.... ..++++|+||||.|++. ++..
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~---~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~ 229 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG---PKFDFIFVDDVDALLKASKNVDKLLKLLGFSE 229 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc---CCCCEEEEeChHhhhhccccHHHHHHHcCCCH
Confidence 23466765432 248999999999987765422 18999999999999873 3433
Q ss_pred -hHHHHH----------------------HHhCCCCc--EEEEcccC-CChHHHHHHhccccCCCeeEeeeCCC--CcCc
Q psy6275 183 -VWEETL----------------------ILLSDNVR--FVFLSATI-PNASQFAQWVSHLHHQPCHVVYTDYR--PTPL 234 (391)
Q Consensus 183 -~~~~i~----------------------~~~~~~~~--~i~~SAT~-~~~~~~~~~l~~~~~~~~~v~~~~~~--~~~i 234 (391)
.++.++ ..++...| ++++|||. |.... ..++. +...+...... ..++
T Consensus 230 e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~-~~l~r----~ll~~~v~~~~~~~r~I 304 (1171)
T TIGR01054 230 ELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR-AKLFR----ELLGFEVGGGSDTLRNV 304 (1171)
T ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH-HHHcc----cccceEecCccccccce
Confidence 233322 22334444 66789994 43311 11121 22222211111 1234
Q ss_pred eEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEE
Q psy6275 235 QHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFS 314 (391)
Q Consensus 235 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~ 314 (391)
.+.++.+. .....+.+++...+ .++||||
T Consensus 305 ~~~~~~~~--------------------------------------------------~~~~~L~~ll~~l~-~~~IVFv 333 (1171)
T TIGR01054 305 VDVYVEDE--------------------------------------------------DLKETLLEIVKKLG-TGGIVYV 333 (1171)
T ss_pred EEEEEecc--------------------------------------------------cHHHHHHHHHHHcC-CCEEEEE
Confidence 44443211 00113444444443 5899999
Q ss_pred cch---hhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 315 FSK---KDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 315 ~t~---~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+|+ +.|+.+++.|.+.|+++. +.++...+.|++ .+++|++|. .-+++++||||++|
T Consensus 334 ~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~~~l~~Fr~G~~~vLVata-------~~tdv~aRGIDip~ 397 (1171)
T TIGR01054 334 SIDYGKEKAEEIAEFLENHGVKAVAYHATKPKEDYEKFAEGEIDVLIGVA-------SYYGTLVRGLDLPE 397 (1171)
T ss_pred eccccHHHHHHHHHHHHhCCceEEEEeCCCCHHHHHHHHcCCCCEEEEec-------cccCcccccCCCCc
Confidence 999 999999999999888754 222456667766 778999863 12359999999998
No 61
>KOG0329|consensus
Probab=99.95 E-value=1e-28 Score=211.82 Aligned_cols=202 Identities=18% Similarity=0.203 Sum_probs=170.6
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|..+-|+|++++.+-++||+ |..+|.++||...-|.++++.|..|.|||.+|.++.++.+.+ ...+++++.||+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 4788899999999999999998 999999999998889999999999999999999999998854 347899999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc-
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK- 178 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~- 178 (391)
|+-|+.+++.++.+ ++.++.|+..+.. -++|+|+||++++.+..++...+++++.+|+||||.|+++
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH
Confidence 99999988877766 6788999888654 4789999999999999999999999999999999988643
Q ss_pred ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCc---CceEeecc
Q psy6275 179 ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPT---PLQHYLFP 240 (391)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~---~i~~~~~~ 240 (391)
.....++.+.+..|...|++.+|||++.. +-+.. .++.+|..++..++... .++++++.
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~---kFmQdPmEi~vDdE~KLtLHGLqQ~Yvk 264 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCH---KFMQDPMEIFVDDEAKLTLHGLQQYYVK 264 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHH---hhhcCchhhhccchhhhhhhhHHHHHHh
Confidence 34556777888889999999999999876 44544 55667888777765533 46666653
No 62
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.95 E-value=3.1e-26 Score=227.77 Aligned_cols=279 Identities=15% Similarity=0.106 Sum_probs=174.3
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-CeEEEEcccHHHHHHHHHHHHHhcc----cceee
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFK----DVGLI 130 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~ 130 (391)
+.|+++|.++++.+..+++.++++|||+|||.++...+...+..+ .++||++||++|+.|+.++++++.. .+..+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 579999999999998899999999999999998755443334444 4999999999999999999998764 23344
Q ss_pred eCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCChHH-
Q psy6275 131 TGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQ- 209 (391)
Q Consensus 131 ~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~- 209 (391)
.++.....+.+|+|+||+++.+.. ...+++++++|+||||++.+ ..+..++..++...++++||||+.+...
T Consensus 193 ~~g~~~~~~~~I~VaT~qsl~~~~---~~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~~lGLTATp~~~~~~ 265 (501)
T PHA02558 193 YSGTAKDTDAPIVVSTWQSAVKQP---KEWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKFKFGLTGSLRDGKAN 265 (501)
T ss_pred ecCcccCCCCCEEEeeHHHHhhch---hhhccccCEEEEEchhcccc----hhHHHHHHhhhccceEEEEeccCCCcccc
Confidence 455454556899999999987543 23467999999999999864 3466777777767889999999975421
Q ss_pred ---HHHHhccccCCCeeEeee-----CCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCC
Q psy6275 210 ---FAQWVSHLHHQPCHVVYT-----DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKG 281 (391)
Q Consensus 210 ---~~~~l~~~~~~~~~v~~~-----~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (391)
+..+++ ...+.... .+...+++...+......... .......++..+..+.. ...++
T Consensus 266 ~~~~~~~fG----~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~l~~--~~~Rn----- 330 (501)
T PHA02558 266 ILQYVGLFG----DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDR----VKLKGEDYQEEIKYITS--HTKRN----- 330 (501)
T ss_pred HHHHHHhhC----CceEEecHHHHHhCCCcCCceEEEEeccCCHHHh----hhhcccchHHHHHHHhc--cHHHH-----
Confidence 122222 11111100 011112221111111000000 00000111111111110 00000
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHHHh-hhc
Q psy6275 282 GRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSNAM-DVL 352 (391)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~~~-~~l 352 (391)
..+..++..+.+ .+.+++|||++.++|+.+++.|.+.|.++ .++|..+.+.+++.. .++
T Consensus 331 -----------~~I~~~~~~~~~-~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vL 398 (501)
T PHA02558 331 -----------KWIANLALKLAK-KGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIII 398 (501)
T ss_pred -----------HHHHHHHHHHHh-cCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEE
Confidence 112223333333 34589999999999999999999876654 367777777777633 355
Q ss_pred chhhccCcchHhHHHHHHhhhhhccC
Q psy6275 353 SEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 353 ~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
++|. +++++|||++..
T Consensus 399 vaT~----------~~l~eG~Dip~l 414 (501)
T PHA02558 399 VASY----------GVFSTGISIKNL 414 (501)
T ss_pred EEEc----------ceeccccccccc
Confidence 5541 599999999864
No 63
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.95 E-value=2.1e-26 Score=234.64 Aligned_cols=259 Identities=20% Similarity=0.236 Sum_probs=175.2
Q ss_pred CCCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 48 EKPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 48 ~~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
...+..++|+||+.|++|++.+.++ .+.+++||||||||.+|+++++..+..+.+++|++||++|+.|+++.++
T Consensus 226 ~~~~~~lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~ 305 (630)
T TIGR00643 226 TKFLASLPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLR 305 (630)
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHH
Confidence 3456778999999999999988654 3689999999999999999999999999999999999999999999999
Q ss_pred Hhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 122 EQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
++++ ++.+++|+... ..+++|+|+||+.+.. ...+.+++++|+||+|++....+ ..
T Consensus 306 ~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~qr----~~ 376 (630)
T TIGR00643 306 NLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQR----KK 376 (630)
T ss_pred HHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHHH----HH
Confidence 9876 56778887653 2357999999987643 23467999999999998643211 12
Q ss_pred HHHHhC--CCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCC---cCceEeeccCCCCCeeeeecCchhhhhchH
Q psy6275 187 TLILLS--DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRP---TPLQHYLFPNGGDGIHLIVDDNKFKEHNYQ 261 (391)
Q Consensus 187 i~~~~~--~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~---~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~ 261 (391)
+..... ..+++++||||+... .++..... ...+......| .++..+++... ...
T Consensus 377 l~~~~~~~~~~~~l~~SATp~pr-tl~l~~~~----~l~~~~i~~~p~~r~~i~~~~~~~~----------------~~~ 435 (630)
T TIGR00643 377 LREKGQGGFTPHVLVMSATPIPR-TLALTVYG----DLDTSIIDELPPGRKPITTVLIKHD----------------EKD 435 (630)
T ss_pred HHHhcccCCCCCEEEEeCCCCcH-HHHHHhcC----CcceeeeccCCCCCCceEEEEeCcc----------------hHH
Confidence 222222 268999999997543 22221111 11111111111 23333332110 000
Q ss_pred HHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcch--------hhHHHHHHHhhcc--C
Q psy6275 262 VAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSK--------KDCEIYAMQMAKL--N 331 (391)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~--------~~~~~la~~L~~~--g 331 (391)
..+..+.+.+ ..+.+++|||+.. ..++.+++.|.+. +
T Consensus 436 -------------------------------~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~ 482 (630)
T TIGR00643 436 -------------------------------IVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPK 482 (630)
T ss_pred -------------------------------HHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCC
Confidence 0011222222 2356899999876 4566777777642 2
Q ss_pred C--------CChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 332 F--------NETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 332 ~--------~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
+ ...++|..+++.|++ ..++|++|+ ++++|||++++++
T Consensus 483 ~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----------vie~GvDiP~v~~ 529 (630)
T TIGR00643 483 YNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----------VIEVGVDVPNATV 529 (630)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----------eeecCcccCCCcE
Confidence 2 234778888888887 678888884 9999999987653
No 64
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.95 E-value=6.9e-27 Score=206.21 Aligned_cols=184 Identities=23% Similarity=0.258 Sum_probs=153.2
Q ss_pred CcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHH
Q psy6275 38 LEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYTTPIKA 111 (391)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl~P~~~ 111 (391)
|+.+++++.+.+.+.+.|++ |+++|.++++.+.+++++++.+|||+|||++|+++++..+.. +++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 46678888888888889998 999999999999999999999999999999999998887743 468999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~ 180 (391)
|+.|+...+..+.. .+..++|+... ..+.+|+|+||+.+...+.+....+++++++|+||+|.+.+.++
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999988865 44556666553 23678999999999998887777788999999999999987778
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCee
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCH 223 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~ 223 (391)
+..+..++..++...|++++|||+++. ...++..+..+++.
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~--~~~~~~~~~~~~~~ 201 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKE--VRDLARKFLRNPVR 201 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHH--HHHHHHHHCCCCEE
Confidence 888888888888899999999999855 33333333444444
No 65
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=1.5e-25 Score=230.96 Aligned_cols=256 Identities=16% Similarity=0.210 Sum_probs=179.4
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceeeeC-C
Q psy6275 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLITG-D 133 (391)
Q Consensus 60 ~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~g-~ 133 (391)
.+-.+.+..+.++++++++|+||||||+++..++++....+++++|+.|+|+++.|++.++.+..+ .++...+ +
T Consensus 5 ~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~ 84 (819)
T TIGR01970 5 AVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE 84 (819)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc
Confidence 344566677888999999999999999999999998776678999999999999999999876554 3443322 3
Q ss_pred cccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc-cCccccchh-HHHHHHHhCCCCcEEEEcccCCChHHHH
Q psy6275 134 VTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY-MRDKERGYV-WEETLILLSDNVRFVFLSATIPNASQFA 211 (391)
Q Consensus 134 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~-~~~~~~~~~-~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 211 (391)
.....+++|+|+|++++++++... ..++++++|||||+|+ +++.+++.. +..+...++.+.|+++||||++.. .+.
T Consensus 85 ~~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~-~l~ 162 (819)
T TIGR01970 85 NKVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE-RLS 162 (819)
T ss_pred cccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH-HHH
Confidence 334456899999999999988764 4688999999999995 555444432 234555567889999999999654 366
Q ss_pred HHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCC
Q psy6275 212 QWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGV 291 (391)
Q Consensus 212 ~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (391)
++++ + ..++...++..++++++......+ .+...
T Consensus 163 ~~l~----~-~~vI~~~gr~~pVe~~y~~~~~~~-------------~~~~~---------------------------- 196 (819)
T TIGR01970 163 SLLP----D-APVVESEGRSFPVEIRYLPLRGDQ-------------RLEDA---------------------------- 196 (819)
T ss_pred HHcC----C-CcEEEecCcceeeeeEEeecchhh-------------hHHHH----------------------------
Confidence 6553 2 234455667777887765432110 00000
Q ss_pred cccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc---CCC--------ChHHHHHHHHHHHH-HhhhcchhhccC
Q psy6275 292 QTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL---NFN--------ETEEVKLVDDVFSN-AMDVLSEEDRKL 359 (391)
Q Consensus 292 ~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~---g~~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~ 359 (391)
....+...+... .+++|||++++.+++.+++.|.+. ++. ..+++..+.+.|.+ ..+++++|
T Consensus 197 --v~~~l~~~l~~~-~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVAT---- 269 (819)
T TIGR01970 197 --VSRAVEHALASE-TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLAT---- 269 (819)
T ss_pred --HHHHHHHHHHhc-CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEec----
Confidence 011233333333 458999999999999999999862 222 23566666666655 45666666
Q ss_pred cchHhHHHHHHhhhhhcc
Q psy6275 360 PQIENILPLLRRGIGIHH 377 (391)
Q Consensus 360 ~~~~~~~~~l~~GI~~~h 377 (391)
++.++||+|..
T Consensus 270 -------nIAErgItIp~ 280 (819)
T TIGR01970 270 -------NIAETSLTIEG 280 (819)
T ss_pred -------chHhhcccccC
Confidence 59999999964
No 66
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=1.4e-25 Score=226.33 Aligned_cols=255 Identities=16% Similarity=0.196 Sum_probs=163.3
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCcchHHHH---------HHHHHHHH---h---cCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVA---------EYAIASSL---K---QSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 60 ~~Q~~~i~~i~~~~~~li~apTGsGKT~~~---------~~~~~~~l---~---~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.+|.++++.+.+++++++.|+||||||.+. +++.+..+ . ...+++|++|+++|+.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999973 23333333 2 34689999999999999999988755
Q ss_pred c-------cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 125 K-------DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 125 ~-------~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
+ .+.+..|+.... ...+|+++|++.. ...+.+++++|+||||++... +..+..++...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~--~DllL~llk~~ 317 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQI--GDIIIAVARKH 317 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccc--hhHHHHHHHHh
Confidence 4 345667766421 2357999997531 124779999999999998765 33444444433
Q ss_pred -CCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhh
Q psy6275 192 -SDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLAN 269 (391)
Q Consensus 192 -~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 269 (391)
+..+|+++||||++.. +.+.++++ ++..+........+++++++........ ...+..
T Consensus 318 ~~~~rq~ILmSATl~~dv~~l~~~~~----~p~~I~I~grt~~pV~~~yi~~~~~~~~----~~~y~~------------ 377 (675)
T PHA02653 318 IDKIRSLFLMTATLEDDRDRIKEFFP----NPAFVHIPGGTLFPISEVYVKNKYNPKN----KRAYIE------------ 377 (675)
T ss_pred hhhcCEEEEEccCCcHhHHHHHHHhc----CCcEEEeCCCcCCCeEEEEeecCccccc----chhhhH------------
Confidence 3446999999999754 55655543 4544444322246788877643210000 000000
Q ss_pred hhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHH---HcCCCcEEEEEcchhhHHHHHHHhhcc--CCCCh------HHH
Q psy6275 270 AGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIM---ERNLAPVIVFSFSKKDCEIYAMQMAKL--NFNET------EEV 338 (391)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~~iIF~~t~~~~~~la~~L~~~--g~~~~------~~r 338 (391)
.....+.+.+. ...++++||||+++.+|+.+++.|.+. ++.+. ..+
T Consensus 378 -----------------------~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~ 434 (675)
T PHA02653 378 -----------------------EEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI 434 (675)
T ss_pred -----------------------HHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH
Confidence 00011222222 223458999999999999999999865 33321 122
Q ss_pred HHHHHHH-HH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 339 KLVDDVF-SN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 339 ~~~~~~~-~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+...+.+ ++ ..+++++| ++++|||||+.
T Consensus 435 eq~l~~ff~~gk~kILVAT-----------dIAERGIDIp~ 464 (675)
T PHA02653 435 DEILEKVYSSKNPSIIIST-----------PYLESSVTIRN 464 (675)
T ss_pred HHHHHHHhccCceeEEecc-----------ChhhccccccC
Confidence 2322333 33 45666666 59999999974
No 67
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=1.4e-25 Score=231.72 Aligned_cols=256 Identities=17% Similarity=0.219 Sum_probs=175.7
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceeeeCCc
Q psy6275 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLITGDV 134 (391)
Q Consensus 60 ~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~g~~ 134 (391)
.+-.+.+..+.+++++++.||||||||+++..++++....+++++|++|+|+++.|++..+.+..+ .++...++.
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~ 87 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE 87 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc
Confidence 444566677888999999999999999999999987655567999999999999999999876543 445544433
Q ss_pred -ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc-Cccccc-hhHHHHHHHhCCCCcEEEEcccCCChHHHH
Q psy6275 135 -TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM-RDKERG-YVWEETLILLSDNVRFVFLSATIPNASQFA 211 (391)
Q Consensus 135 -~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 211 (391)
....+++|+|+||+++++++.... .+.++++||+||+|+. .+.+.. ..+..++..++.+.|+++||||++.. .+.
T Consensus 88 ~~~~~~t~I~v~T~G~Llr~l~~d~-~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~-~l~ 165 (812)
T PRK11664 88 SKVGPNTRLEVVTEGILTRMIQRDP-ELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND-RLQ 165 (812)
T ss_pred cccCCCCcEEEEChhHHHHHHhhCC-CcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH-HHH
Confidence 345567899999999999887644 6889999999999973 332211 12233455567789999999999654 466
Q ss_pred HHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCC
Q psy6275 212 QWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGV 291 (391)
Q Consensus 212 ~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (391)
+++. ++ .++...++..++++++...+... + +..
T Consensus 166 ~~~~----~~-~~I~~~gr~~pV~~~y~~~~~~~---------~----~~~----------------------------- 198 (812)
T PRK11664 166 QLLP----DA-PVIVSEGRSFPVERRYQPLPAHQ---------R----FDE----------------------------- 198 (812)
T ss_pred HhcC----CC-CEEEecCccccceEEeccCchhh---------h----HHH-----------------------------
Confidence 6543 22 23445567778887776443210 0 000
Q ss_pred cccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc---cCCC--------ChHHHHHHHHHHHH-HhhhcchhhccC
Q psy6275 292 QTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK---LNFN--------ETEEVKLVDDVFSN-AMDVLSEEDRKL 359 (391)
Q Consensus 292 ~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~---~g~~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~ 359 (391)
.....+...+.. ..+.+|||++++.+++.+++.|.+ .++. ..++++.....+.+ ..+++++|
T Consensus 199 -~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvAT---- 272 (812)
T PRK11664 199 -AVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLAT---- 272 (812)
T ss_pred -HHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEec----
Confidence 001123333333 346899999999999999999986 2222 22455555544444 44556655
Q ss_pred cchHhHHHHHHhhhhhcc
Q psy6275 360 PQIENILPLLRRGIGIHH 377 (391)
Q Consensus 360 ~~~~~~~~~l~~GI~~~h 377 (391)
+++++||+|..
T Consensus 273 -------nIAErsLtIp~ 283 (812)
T PRK11664 273 -------NIAETSLTIEG 283 (812)
T ss_pred -------chHHhcccccC
Confidence 59999999974
No 68
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.94 E-value=4.9e-25 Score=210.03 Aligned_cols=144 Identities=20% Similarity=0.241 Sum_probs=104.4
Q ss_pred HHHHHHHHHhcCCc--EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--------cceee
Q psy6275 61 FQKEAILCIENNQS--VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--------DVGLI 130 (391)
Q Consensus 61 ~Q~~~i~~i~~~~~--~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--------~v~~~ 130 (391)
+|.++++.+.++++ ++++||||||||.+++++++. ...+++|++|+++|++|+++++..++. .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~---~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~ 77 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH---GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHV 77 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH---cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEe
Confidence 59999999987764 789999999999999998875 356899999999999999999998873 23334
Q ss_pred eCCccc---------------------------CCCCCEEEEcHHHHHHHHhcC---c-----cccCccceEEEeccccc
Q psy6275 131 TGDVTI---------------------------NPSSSCLIMTTEILRNMLYRG---S-----EITREVGWVIFDEIHYM 175 (391)
Q Consensus 131 ~g~~~~---------------------------~~~~~I~v~Tp~~l~~~l~~~---~-----~~l~~~~~lViDE~h~~ 175 (391)
+|+... ...+.|+++||+.+..++... . .++.+++++|+||+|.+
T Consensus 78 ~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 78 SKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLY 157 (357)
T ss_pred cCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccccc
Confidence 554111 124678888999987655431 1 13578999999999998
Q ss_pred Cccccchh-----HHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 176 RDKERGYV-----WEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 176 ~~~~~~~~-----~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
..+..... ...++.......++++||||++..
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~ 194 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA 194 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH
Confidence 64332211 122223333457999999999765
No 69
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=2.7e-25 Score=229.97 Aligned_cols=277 Identities=21% Similarity=0.263 Sum_probs=196.9
Q ss_pred CCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 48 EKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 48 ~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
...+.+.|.. |+++|.+|+..+.+|+|++|+.|||||||.+|++|+++.+-++ .++|++.||++|++++.++++++.
T Consensus 60 ~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~ 139 (851)
T COG1205 60 KSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELI 139 (851)
T ss_pred HHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHH
Confidence 3444555555 9999999999999999999999999999999999999988654 467999999999999999999987
Q ss_pred c------cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCc----cccCccceEEEecccccCccccchhHHHH
Q psy6275 125 K------DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGS----EITREVGWVIFDEIHYMRDKERGYVWEET 187 (391)
Q Consensus 125 ~------~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~----~~l~~~~~lViDE~h~~~~~~~~~~~~~i 187 (391)
. .++.++|+... ...++|+++||+++..++.... ..++++++||+||+|..-. .+|..+..+
T Consensus 140 ~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG-v~GS~vA~l 218 (851)
T COG1205 140 SDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG-VQGSEVALL 218 (851)
T ss_pred HhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc-cchhHHHHH
Confidence 6 34568888764 3468999999999987554332 3456899999999998643 466666655
Q ss_pred HHHh-------CCCCcEEEEcccCCChHHHHHHhccccCCCeeE-eeeCCCCcCceEeeccCCCCCeeeeecCchhhhhc
Q psy6275 188 LILL-------SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV-VYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHN 259 (391)
Q Consensus 188 ~~~~-------~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v-~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~ 259 (391)
++++ +.+.|+|+.|||+.++.+++.-+. +..... +..++.+....+++...+..... ...
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~---~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~---------~~~ 286 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPGEFAEELF---GRDFEVPVDEDGSPRGLRYFVRREPPIREL---------AES 286 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChHHHHHHhc---CCcceeeccCCCCCCCceEEEEeCCcchhh---------hhh
Confidence 5543 357999999999999866666433 334444 55666666666666654421000 000
Q ss_pred hHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHH----HHhhccC----
Q psy6275 260 YQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYA----MQMAKLN---- 331 (391)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la----~~L~~~g---- 331 (391)
...+.......+...+..++ .++|+|+.+++.++.+. +.+...+
T Consensus 287 ---------------------------~r~s~~~~~~~~~~~~~~~~-~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~ 338 (851)
T COG1205 287 ---------------------------IRRSALAELATLAALLVRNG-IQTLVFFRSRKQVELLYLSPRRRLVREGGKLL 338 (851)
T ss_pred ---------------------------cccchHHHHHHHHHHHHHcC-ceEEEEEehhhhhhhhhhchhHHHhhcchhhh
Confidence 00000122345555555555 59999999999999997 4444444
Q ss_pred --------CCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc
Q psy6275 332 --------FNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 332 --------~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~ 376 (391)
....++|..+...++. .+..++.| .++.-||||-
T Consensus 339 ~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st-----------~AlelgidiG 381 (851)
T COG1205 339 DAVSTYRAGLHREERRRIEAEFKEGELLGVIAT-----------NALELGIDIG 381 (851)
T ss_pred hheeeccccCCHHHHHHHHHHHhcCCccEEecc-----------hhhhhceeeh
Confidence 1223667777777776 55665655 6999999983
No 70
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.94 E-value=1.7e-25 Score=214.62 Aligned_cols=139 Identities=24% Similarity=0.363 Sum_probs=102.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcc-cceeeeCCccc--------------
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFK-DVGLITGDVTI-------------- 136 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g~~~~-------------- 136 (391)
++++.||||||||.+++.+++..+. .+.+++|++|+++|+.|+++++...++ .++.++|....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 4799999999999999999988773 357999999999999999999999865 56655554321
Q ss_pred -------C----CCCCEEEEcHHHHHHHHhcCcc----cc--CccceEEEecccccCccccchhHHHHHHHh-CCCCcEE
Q psy6275 137 -------N----PSSSCLIMTTEILRNMLYRGSE----IT--REVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFV 198 (391)
Q Consensus 137 -------~----~~~~I~v~Tp~~l~~~l~~~~~----~l--~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i 198 (391)
+ ...+|+|+||+++...+..... .+ -..+++|+||+|.+.+.+++. +..++..+ ..+.|++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 0 1357999999998877654211 11 123799999999998765554 44444444 3578999
Q ss_pred EEcccCCChHHHHHHhc
Q psy6275 199 FLSATIPNASQFAQWVS 215 (391)
Q Consensus 199 ~~SAT~~~~~~~~~~l~ 215 (391)
+||||+++. +.+++.
T Consensus 160 ~~SATlp~~--l~~~~~ 174 (358)
T TIGR01587 160 LMSATLPKF--LKEYAE 174 (358)
T ss_pred EEecCchHH--HHHHHh
Confidence 999999743 445443
No 71
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.7e-25 Score=218.39 Aligned_cols=263 Identities=16% Similarity=0.181 Sum_probs=187.1
Q ss_pred cCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeee
Q psy6275 53 EYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT 131 (391)
Q Consensus 53 ~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~ 131 (391)
-+||. +++-|.++|..+.+++++++..|||+|||+||.+|.+-. .+-+||+.|..+|..++.+.++..+..+..+.
T Consensus 12 ~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~ln 88 (590)
T COG0514 12 VFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLN 88 (590)
T ss_pred HhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHHHHHcCceeehhh
Confidence 35787 999999999999999999999999999999999998665 67899999999999999999999886665555
Q ss_pred CCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc--cchhHHHHHHHhC--CCCc
Q psy6275 132 GDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE--RGYVWEETLILLS--DNVR 196 (391)
Q Consensus 132 g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~--~~~~~~~i~~~~~--~~~~ 196 (391)
+.... ..+.++++.+||++..-.......-..+.+++|||||++++|+ |.+.+..+-.... ++.+
T Consensus 89 S~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p 168 (590)
T COG0514 89 STLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPP 168 (590)
T ss_pred cccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCC
Confidence 54332 2246899999998774322221224478999999999999996 7777776554432 2789
Q ss_pred EEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhh
Q psy6275 197 FVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAA 274 (391)
Q Consensus 197 ~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 274 (391)
++++|||.++. .++.+.|. .+...++.......++...+....
T Consensus 169 ~~AlTATA~~~v~~DI~~~L~---l~~~~~~~~sfdRpNi~~~v~~~~-------------------------------- 213 (590)
T COG0514 169 VLALTATATPRVRDDIREQLG---LQDANIFRGSFDRPNLALKVVEKG-------------------------------- 213 (590)
T ss_pred EEEEeCCCChHHHHHHHHHhc---CCCcceEEecCCCchhhhhhhhcc--------------------------------
Confidence 99999998765 66666554 233233333222222222222100
Q ss_pred ccCCCCCCCCCCCCCCCcccHHHHHHHH---HHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHH
Q psy6275 275 KAGDHKGGRKGGPKGGVQTNCFKIVKMI---MERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDD 343 (391)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~ 343 (391)
+...++. .+ ..+..++.||||.||+.|+.+|+.|...|+.+. ++|..+.+
T Consensus 214 ------------------~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~ 274 (590)
T COG0514 214 ------------------EPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQ 274 (590)
T ss_pred ------------------cHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHH
Confidence 0011111 22 245566899999999999999999999877764 78888888
Q ss_pred HHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 344 VFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 344 ~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
.|.. .+.++++|- ++.-|||-+ |-+||..
T Consensus 275 ~f~~~~~~iiVAT~-----------AFGMGIdKpdVRfViH~~lP~s 310 (590)
T COG0514 275 AFLNDEIKVMVATN-----------AFGMGIDKPDVRFVIHYDLPGS 310 (590)
T ss_pred HHhcCCCcEEEEec-----------cccCccCCCCceEEEEecCCCC
Confidence 8887 778888773 444455544 6677754
No 72
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=1.3e-24 Score=185.91 Aligned_cols=147 Identities=29% Similarity=0.474 Sum_probs=125.4
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCC--eEEEEcccHHHHHHHHHHHHHhcc----cceeeeC
Q psy6275 59 DPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEEQFK----DVGLITG 132 (391)
Q Consensus 59 ~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~--~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g 132 (391)
||+|.++++.+.+++++++.||||+|||++++.+++..+.++. ++++++|+++|++|+.+.+...+. .+..++|
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999999999998886644 999999999999999999999987 3555677
Q ss_pred CcccC--------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC--CCCcEEEEcc
Q psy6275 133 DVTIN--------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS--DNVRFVFLSA 202 (391)
Q Consensus 133 ~~~~~--------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SA 202 (391)
+.... .+++|+|+||+++...+......+.+++++|+||+|.+.++.++..+..++..+. .+.+++++||
T Consensus 81 ~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SA 160 (169)
T PF00270_consen 81 GQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSA 160 (169)
T ss_dssp TSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEES
T ss_pred cccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEee
Confidence 65422 3689999999999999887544666799999999999987666777777877763 3689999999
Q ss_pred cCC
Q psy6275 203 TIP 205 (391)
Q Consensus 203 T~~ 205 (391)
|++
T Consensus 161 T~~ 163 (169)
T PF00270_consen 161 TLP 163 (169)
T ss_dssp SST
T ss_pred CCC
Confidence 997
No 73
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.90 E-value=2.1e-22 Score=196.75 Aligned_cols=296 Identities=19% Similarity=0.194 Sum_probs=180.1
Q ss_pred ccCCCCCcHHHHHHHHHHhc----CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 52 REYPFVLDPFQKEAILCIEN----NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 52 ~~~~~~~~~~Q~~~i~~i~~----~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
....++++++|++|+..+.+ ++..++++|||+|||.+++..+... ..++||++|+++|+.|+.+.+...+.
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~---~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL---KRSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh---cCCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 44456799999999999877 8899999999999999988777665 34499999999999999988887776
Q ss_pred -cceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 126 -DVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 126 -~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
.++.+.|+........|+|+|.+.+...........+.+++||+||||++.+. ....+...+.....+++||||+
T Consensus 108 ~~~g~~~~~~~~~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~----~~~~~~~~~~~~~~~LGLTATp 183 (442)
T COG1061 108 DEIGIYGGGEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP----SYRRILELLSAAYPRLGLTATP 183 (442)
T ss_pred cccceecCceeccCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH----HHHHHHHhhhcccceeeeccCc
Confidence 35666665443222579999999987642111222337999999999998654 3334444444323399999998
Q ss_pred CChH-HHHHHhccccCCCeeEee-----eCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHh-----hhhhhh
Q psy6275 205 PNAS-QFAQWVSHLHHQPCHVVY-----TDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL-----ANAGDA 273 (391)
Q Consensus 205 ~~~~-~~~~~l~~~~~~~~~v~~-----~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~ 273 (391)
+... .....+....+...+-.. ..+-..+...+.+.+....... ..+....... ...+ ......
T Consensus 184 ~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~ 258 (442)
T COG1061 184 EREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEE----REYAKESARF-RELLRARGTLRAENE 258 (442)
T ss_pred eeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHH----HHhhhhhhhh-hhhhhhhhhhhHHHH
Confidence 7543 122221111111111111 1122334444333322110000 0000000000 0000 000000
Q ss_pred hccCCCCCCCCCCCCCCCcccHHHHHHHHHHc-CCCcEEEEEcchhhHHHHHHHhhccCC-------CChHHHHHHHHHH
Q psy6275 274 AKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER-NLAPVIVFSFSKKDCEIYAMQMAKLNF-------NETEEVKLVDDVF 345 (391)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIF~~t~~~~~~la~~L~~~g~-------~~~~~r~~~~~~~ 345 (391)
.... ......+...+...+... .+.+++|||.+..+++.++..|...|. ....+|..+.+.|
T Consensus 259 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 259 ARRI----------AIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERF 328 (442)
T ss_pred HHHH----------hhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHH
Confidence 0000 000012333444444444 467999999999999999999987744 3448899999999
Q ss_pred HH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 346 SN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 346 ~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
+. .++.|+.. .++..|||+++++.
T Consensus 329 r~g~~~~lv~~-----------~vl~EGvDiP~~~~ 353 (442)
T COG1061 329 RTGGIKVLVTV-----------KVLDEGVDIPDADV 353 (442)
T ss_pred HcCCCCEEEEe-----------eeccceecCCCCcE
Confidence 88 66776666 48999999998775
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.90 E-value=3.3e-22 Score=209.91 Aligned_cols=161 Identities=21% Similarity=0.227 Sum_probs=122.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
..+++++||.+++..+..+ |+++++|||+|||.++++++...+. .++++||++|+++|+.|+...+++.++ .+.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~ 90 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIV 90 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEE
Confidence 4567999999999887766 8999999999999999888877663 468999999999999999999998865 556
Q ss_pred eeeCCccc------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcc
Q psy6275 129 LITGDVTI------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSA 202 (391)
Q Consensus 129 ~~~g~~~~------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 202 (391)
.++|+... ..+.+|+|+||+.+...+......+.+++++|+||||++........+...........++++|||
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTa 170 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTA 170 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEc
Confidence 67776553 236789999999998877666677889999999999998643211122222222234577999999
Q ss_pred cCCCh-HHHHHHhc
Q psy6275 203 TIPNA-SQFAQWVS 215 (391)
Q Consensus 203 T~~~~-~~~~~~l~ 215 (391)
|+... ..+...+.
T Consensus 171 TP~~~~~~i~~~~~ 184 (773)
T PRK13766 171 SPGSDEEKIKEVCE 184 (773)
T ss_pred CCCCCHHHHHHHHH
Confidence 98654 44444443
No 75
>KOG0349|consensus
Probab=99.90 E-value=3e-24 Score=196.79 Aligned_cols=244 Identities=17% Similarity=0.190 Sum_probs=155.3
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhcc-----cce--eeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccce
Q psy6275 101 QRVIYTTPIKALSNQKYREFEEQFK-----DVG--LITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGW 166 (391)
Q Consensus 101 ~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~--~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~ 166 (391)
+..+|+-|+++|++|+...+.++.. .+. ++.|+... ....+|+|+||+++.+.+..+...+...++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 4799999999999999996555433 121 33443332 335799999999999999999888999999
Q ss_pred EEEecccccCccccchhHHHHHHHhC------CCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCC--CcCceE
Q psy6275 167 VIFDEIHYMRDKERGYVWEETLILLS------DNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYR--PTPLQH 236 (391)
Q Consensus 167 lViDE~h~~~~~~~~~~~~~i~~~~~------~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~ 236 (391)
+|+||++.++..++...+..+...++ ...|.+.+|||+..- +.+++. .+.-|..+-..... |..+.+
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~er---vmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGER---VMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhh---hccCceeEecccccccchhhcc
Confidence 99999999998888877777776664 468999999998643 445553 34455666544433 334555
Q ss_pred eeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHH---------HHHHHHcCC
Q psy6275 237 YLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKI---------VKMIMERNL 307 (391)
Q Consensus 237 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~l~~~~~ 307 (391)
++..+... ++ ..+...-..+.- +.....+....+..+ ++..... +..++++..
T Consensus 444 vv~lv~p~-----~d------~sw~~lr~~i~t-d~vh~kdn~~pg~~S------pe~~s~a~kilkgEy~v~ai~~h~m 505 (725)
T KOG0349|consen 444 VVKLVCPS-----VD------GSWCDLRQFIET-DKVHTKDNLLPGQVS------PENPSSATKILKGEYGVVAIRRHAM 505 (725)
T ss_pred ceeecCCc-----cC------ccHHHHhhhhcc-CCcccccccccccCC------CCChhhhhHHhcCchhhhhhhhhcc
Confidence 55443321 00 011111000000 000000000000000 1111111 222345567
Q ss_pred CcEEEEEcchhhHHHHHHHhhccCCC-----------ChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhh
Q psy6275 308 APVIVFSFSKKDCEIYAMQMAKLNFN-----------ETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGI 375 (391)
Q Consensus 308 ~~~iIF~~t~~~~~~la~~L~~~g~~-----------~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~ 375 (391)
.++||||.|+.+|+.|-+.|+..|-. ..++|.+..+.|++ .++.|++|| +.+||+||
T Consensus 506 dkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictd-----------vaargldi 574 (725)
T KOG0349|consen 506 DKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTD-----------VAARGLDI 574 (725)
T ss_pred CceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEeh-----------hhhccccc
Confidence 89999999999999999999987542 13677777777777 677777775 99999999
Q ss_pred c
Q psy6275 376 H 376 (391)
Q Consensus 376 ~ 376 (391)
|
T Consensus 575 ~ 575 (725)
T KOG0349|consen 575 T 575 (725)
T ss_pred c
Confidence 8
No 76
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=3.8e-22 Score=187.37 Aligned_cols=169 Identities=21% Similarity=0.211 Sum_probs=131.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
.++++.||.......+.+ |.+++.|||-|||+++++-+...+.. ++++|+++||+.|+.|.+..+.+.++ .+..
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheee
Confidence 346899999988776655 89999999999999998888877654 45799999999999999999999987 6778
Q ss_pred eeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHH---HhCCCCcEEEE
Q psy6275 130 ITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI---LLSDNVRFVFL 200 (391)
Q Consensus 130 ~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~---~~~~~~~~i~~ 200 (391)
++|..... .+.+|+|+||+.+.+-+..+..++.++.++|+||||+.... - .+-.+.. ....++.+++|
T Consensus 92 ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGn--y-AYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 92 LTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGN--Y-AYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred ecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCc--c-hHHHHHHHHHHhccCceEEEE
Confidence 99988764 36799999999999999999999999999999999986432 1 2222222 23456789999
Q ss_pred cccCCCh-HHHHHHhccccCCCeeEeee
Q psy6275 201 SATIPNA-SQFAQWVSHLHHQPCHVVYT 227 (391)
Q Consensus 201 SAT~~~~-~~~~~~l~~~~~~~~~v~~~ 227 (391)
|||+.+. +.+.+-+..+.-+.+.+...
T Consensus 169 TASPGs~~ekI~eV~~nLgIe~vevrTE 196 (542)
T COG1111 169 TASPGSDLEKIQEVVENLGIEKVEVRTE 196 (542)
T ss_pred ecCCCCCHHHHHHHHHhCCcceEEEecC
Confidence 9999876 55555544444444444443
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=4.9e-22 Score=200.06 Aligned_cols=280 Identities=14% Similarity=0.108 Sum_probs=175.8
Q ss_pred CCCCcHHHHHHHHHHhc-C--CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cc
Q psy6275 55 PFVLDPFQKEAILCIEN-N--QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DV 127 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~-~--~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v 127 (391)
.+.++|||.+++..+.. + ++.++++|||+|||++.+..+... ..++||+||+..|+.||.+++.+++. .+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l---~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I 329 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV---KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQI 329 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh---CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceE
Confidence 45799999999998763 3 478999999999999987766554 57899999999999999999999864 55
Q ss_pred eeeeCCcccC--CCCCEEEEcHHHHHHHHhcCc------ccc--CccceEEEecccccCccccchhHHHHHHHhCCCCcE
Q psy6275 128 GLITGDVTIN--PSSSCLIMTTEILRNMLYRGS------EIT--REVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRF 197 (391)
Q Consensus 128 ~~~~g~~~~~--~~~~I~v~Tp~~l~~~l~~~~------~~l--~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 197 (391)
+.++|+.... ....|+|+|++.+.....+.. ..+ ..++++|+||||++.. ..+..++..+. ....
T Consensus 330 ~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~-a~~R 404 (732)
T TIGR00603 330 CRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQ-AHCK 404 (732)
T ss_pred EEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcC-cCcE
Confidence 6677754332 246899999998754322110 112 3688999999999853 34555666554 3567
Q ss_pred EEEcccCCChHHHHHHhccccCCCeeEe-----eeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHH--HHHHhhhh
Q psy6275 198 VFLSATIPNASQFAQWVSHLHHQPCHVV-----YTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQV--AMNVLANA 270 (391)
Q Consensus 198 i~~SAT~~~~~~~~~~l~~~~~~~~~v~-----~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~ 270 (391)
++||||+....+....+..+.+...+.. ...+-..+++..-++++...-.. ..|....... .+..++
T Consensus 405 LGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~----~~yl~~~~~~k~~l~~~n-- 478 (732)
T TIGR00603 405 LGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFY----REYLRENSRKRMLLYVMN-- 478 (732)
T ss_pred EEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHH----HHHHHhcchhhhHHhhhC--
Confidence 9999999765322222222222222211 11222333433333333211000 0111100000 000110
Q ss_pred hhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH--cCCCcEEEEEcchhhHHHHHHHhhc---cCCCChHHHHHHHHHH
Q psy6275 271 GDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAK---LNFNETEEVKLVDDVF 345 (391)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~iIF~~t~~~~~~la~~L~~---~g~~~~~~r~~~~~~~ 345 (391)
++++..+..++.. ..+.++||||.+...++.++..|.. .|-....+|..+.+.|
T Consensus 479 ---------------------p~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~F 537 (732)
T TIGR00603 479 ---------------------PNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNF 537 (732)
T ss_pred ---------------------hHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHH
Confidence 1233333333332 3567999999999999999999954 2555668999999999
Q ss_pred HH--HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 346 SN--AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 346 ~~--~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
+. .+.+|+.+ +++.+|||++.++.
T Consensus 538 r~~~~i~vLv~S-----------kVgdeGIDlP~a~v 563 (732)
T TIGR00603 538 QHNPKVNTIFLS-----------KVGDTSIDLPEANV 563 (732)
T ss_pred HhCCCccEEEEe-----------cccccccCCCCCCE
Confidence 85 35667666 48899999986654
No 78
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.88 E-value=3.4e-21 Score=172.47 Aligned_cols=261 Identities=19% Similarity=0.262 Sum_probs=179.9
Q ss_pred cCCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--c
Q psy6275 53 EYPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--D 126 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~ 126 (391)
.++-++++.|+.+-..+ .+.++.++.|-||+|||....-.+-..+.+|+++.+..|....+-+++.+++..+. +
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~ 172 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCD 172 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCC
Confidence 34446999999987654 56789999999999999998888888899999999999999999999999999998 6
Q ss_pred ceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 127 VGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 127 v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
+..++|++...-.++++|+|...++++-. .+|++|+||+|.+.-.........+-.......-.|.+|||+++
T Consensus 173 I~~Lyg~S~~~fr~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k 245 (441)
T COG4098 173 IDLLYGDSDSYFRAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTK 245 (441)
T ss_pred eeeEecCCchhccccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChH
Confidence 67799998877679999999998887543 79999999999875332222233444445567789999999876
Q ss_pred hHHHHHHhccccCCCeeEe-ee---CCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCC
Q psy6275 207 ASQFAQWVSHLHHQPCHVV-YT---DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGG 282 (391)
Q Consensus 207 ~~~~~~~l~~~~~~~~~v~-~~---~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (391)
. +.+.+ ..+..... .+ ..+|-++..+++.-+ +...+..
T Consensus 246 ~--l~r~~---~~g~~~~~klp~RfH~~pLpvPkf~w~~~-----------------~~k~l~r---------------- 287 (441)
T COG4098 246 K--LERKI---LKGNLRILKLPARFHGKPLPVPKFVWIGN-----------------WNKKLQR---------------- 287 (441)
T ss_pred H--HHHHh---hhCCeeEeecchhhcCCCCCCCceEEecc-----------------HHHHhhh----------------
Confidence 5 22221 12222221 11 234555555555321 1111100
Q ss_pred CCCCCCCCCcccHHHHHHHHHH--cCCCcEEEEEcchhhHHHHHHHhhc-cCCCC-------hHHHHHHHHHHHH-Hhhh
Q psy6275 283 RKGGPKGGVQTNCFKIVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAK-LNFNE-------TEEVKLVDDVFSN-AMDV 351 (391)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~l~~--~~~~~~iIF~~t~~~~~~la~~L~~-~g~~~-------~~~r~~~~~~~~~-~~~~ 351 (391)
+.-+. .+++.+.. ..+.+++||+++....++++..|.. ..... ...|.+..+.|++ .++.
T Consensus 288 ------~kl~~---kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~l 358 (441)
T COG4098 288 ------NKLPL---KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITL 358 (441)
T ss_pred ------ccCCH---HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEE
Confidence 00011 34444443 2357999999999999999999943 22211 1335555555665 6677
Q ss_pred cchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 352 LSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 352 l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
|+.| ..|+||+-|+..
T Consensus 359 LiTT-----------TILERGVTfp~v 374 (441)
T COG4098 359 LITT-----------TILERGVTFPNV 374 (441)
T ss_pred EEEe-----------ehhhcccccccc
Confidence 6666 599999998754
No 79
>KOG0950|consensus
Probab=99.88 E-value=1.3e-21 Score=195.38 Aligned_cols=303 Identities=24% Similarity=0.289 Sum_probs=197.8
Q ss_pred ccCCCC-CcHHHHHHHH--HHhcCCcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHHHHHHHhcccc
Q psy6275 52 REYPFV-LDPFQKEAIL--CIENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKYREFEEQFKDV 127 (391)
Q Consensus 52 ~~~~~~-~~~~Q~~~i~--~i~~~~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v 127 (391)
+..|.. ++.||.+++. .++.++|.+..+||+.|||+++.+.++.. +.....++.+.|..+.+.+-...+..+....
T Consensus 217 ~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~ 296 (1008)
T KOG0950|consen 217 KDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDL 296 (1008)
T ss_pred HhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhcccc
Confidence 344554 8999999985 57789999999999999999997777664 4567789999999999888887777776644
Q ss_pred ee----eeCCccc---CCCCCEEEEcHHHHHHHHhcC--ccccCccceEEEecccccCccccchhHHHHHHHh-----CC
Q psy6275 128 GL----ITGDVTI---NPSSSCLIMTTEILRNMLYRG--SEITREVGWVIFDEIHYMRDKERGYVWEETLILL-----SD 193 (391)
Q Consensus 128 ~~----~~g~~~~---~~~~~I~v~Tp~~l~~~l~~~--~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-----~~ 193 (391)
|+ ..|..+. ....++.|||.|+-..++..- ...+..+++||+||.|.+.+.++|..++.++..+ ..
T Consensus 297 G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~ 376 (1008)
T KOG0950|consen 297 GFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLET 376 (1008)
T ss_pred CCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhcccc
Confidence 33 4444332 235679999999866554431 1235589999999999999999999999888754 33
Q ss_pred CCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhh
Q psy6275 194 NVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDA 273 (391)
Q Consensus 194 ~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 273 (391)
..|+|+||||++|...+..|+. ..++....||+++.+++.. +..++... ....+......
T Consensus 377 ~~~iIGMSATi~N~~lL~~~L~------A~~y~t~fRPv~L~E~ik~--G~~i~~~~------------r~~~lr~ia~l 436 (1008)
T KOG0950|consen 377 SVQIIGMSATIPNNSLLQDWLD------AFVYTTRFRPVPLKEYIKP--GSLIYESS------------RNKVLREIANL 436 (1008)
T ss_pred ceeEeeeecccCChHHHHHHhh------hhheecccCcccchhccCC--Ccccccch------------hhHHHHHhhhh
Confidence 4779999999999999999997 4678888999999888743 22222110 11111111100
Q ss_pred hccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHH--HHHHHHhhh
Q psy6275 274 AKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD--DVFSNAMDV 351 (391)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~--~~~~~~~~~ 351 (391)
.+ ....++.+ +.+..+....... +.++||||++|+.|+.+|..+... +.......... .......+.
T Consensus 437 -~~-------~~~g~~dp-D~~v~L~tet~~e-~~~~lvfc~sk~~ce~~a~~~~~~-vpk~~~~e~~~~~~~~~s~s~~ 505 (1008)
T KOG0950|consen 437 -YS-------SNLGDEDP-DHLVGLCTETAPE-GSSVLVFCPSKKNCENVASLIAKK-VPKHIKSEKRLGLWELLSISNL 505 (1008)
T ss_pred -hh-------hhcccCCC-cceeeehhhhhhc-CCeEEEEcCcccchHHHHHHHHHH-hhHhhhhhhhhhHHHHHHHHhH
Confidence 00 00001111 2223333322222 347999999999999999777653 11111100000 011111111
Q ss_pred cchhhccCcchHhHHHHHHhhhhhccCCCCcccccc
Q psy6275 352 LSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQS 387 (391)
Q Consensus 352 l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~~ 387 (391)
+..-+..+. .++...+..|++|||+|++.+.|+.
T Consensus 506 lr~~~~~ld--~Vl~~ti~~GvAyHhaGLT~eER~~ 539 (1008)
T KOG0950|consen 506 LRRIPGILD--PVLAKTIPYGVAYHHAGLTSEEREI 539 (1008)
T ss_pred hhcCCcccc--hHHheeccccceecccccccchHHH
Confidence 111222222 4577899999999999999998863
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.87 E-value=7.6e-21 Score=194.59 Aligned_cols=145 Identities=26% Similarity=0.272 Sum_probs=115.2
Q ss_pred CCCCCcHHHHHHHHHHhc---CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-ccee
Q psy6275 54 YPFVLDPFQKEAILCIEN---NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~---~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~ 129 (391)
..+.+++.|+++++.+.+ ++++++.|+||||||.+|+.++...+..+.++||++|+++|+.|+++.+++.++ .+..
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~ 220 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAV 220 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEE
Confidence 345799999999999876 478999999999999999999888888899999999999999999999998776 6778
Q ss_pred eeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc-cchh--HHHH--HHHhCC
Q psy6275 130 ITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE-RGYV--WEET--LILLSD 193 (391)
Q Consensus 130 ~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~-~~~~--~~~i--~~~~~~ 193 (391)
++|+.+. ....+|+|+|++.+. ..+.+++++|+||+|...... .++. ...+ ......
T Consensus 221 ~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 221 LHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 8887653 235789999998764 346799999999999764321 1221 2222 223346
Q ss_pred CCcEEEEcccCC
Q psy6275 194 NVRFVFLSATIP 205 (391)
Q Consensus 194 ~~~~i~~SAT~~ 205 (391)
+.+++++|||++
T Consensus 294 ~~~~il~SATps 305 (679)
T PRK05580 294 NIPVVLGSATPS 305 (679)
T ss_pred CCCEEEEcCCCC
Confidence 799999999975
No 81
>KOG0354|consensus
Probab=99.87 E-value=5.3e-21 Score=189.41 Aligned_cols=164 Identities=21% Similarity=0.274 Sum_probs=124.0
Q ss_pred CccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcc--c
Q psy6275 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFK--D 126 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~--~ 126 (391)
...-.+.+++||.+....++ ++|+++++|||+|||+++...+..++.. .+++++++|++-|+.|+...++..+. .
T Consensus 56 ~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~ 134 (746)
T KOG0354|consen 56 IYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYS 134 (746)
T ss_pred cccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccc
Confidence 33344579999999998888 9999999999999999999999998853 58999999999999999988888775 2
Q ss_pred ceeeeCC-cccC------CCCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcE
Q psy6275 127 VGLITGD-VTIN------PSSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRF 197 (391)
Q Consensus 127 v~~~~g~-~~~~------~~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~ 197 (391)
+....|+ .... ...+|+|+||+.+.+-+.+... .++.+.++||||||+.... .+...+...+..-....|+
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qI 214 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQI 214 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccE
Confidence 3233333 3322 2468999999999988876543 3689999999999987532 2333344444444455699
Q ss_pred EEEcccCCCh-HHHHHHhc
Q psy6275 198 VFLSATIPNA-SQFAQWVS 215 (391)
Q Consensus 198 i~~SAT~~~~-~~~~~~l~ 215 (391)
+++|||+.+. .++.+.+.
T Consensus 215 LgLTASpG~~~~~v~~~I~ 233 (746)
T KOG0354|consen 215 LGLTASPGSKLEQVQNVID 233 (746)
T ss_pred EEEecCCCccHHHHHHHHH
Confidence 9999999865 55555544
No 82
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.87 E-value=6e-21 Score=201.35 Aligned_cols=255 Identities=17% Similarity=0.219 Sum_probs=161.3
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHH-HHHHHhc--CCeEEEEcccH----HHHHHHHHHHHHhcc-ccee
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYA-IASSLKQ--SQRVIYTTPIK----ALSNQKYREFEEQFK-DVGL 129 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~-~~~~l~~--~~~vlvl~P~~----~L~~q~~~~~~~~~~-~v~~ 129 (391)
...+-.+.+..+.+++.++++|+||||||+. +| ++..... .+.+++..|.+ +|+.++.+++....+ .+|+
T Consensus 75 i~~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 75 VSQKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 3455556667778888899999999999995 44 2222222 24677778864 777777777765333 4444
Q ss_pred eeC-CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc-cCccccchhHHHHHHHhC--CCCcEEEEcccCC
Q psy6275 130 ITG-DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY-MRDKERGYVWEETLILLS--DNVRFVFLSATIP 205 (391)
Q Consensus 130 ~~g-~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~-~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~ 205 (391)
-.. +.....+++|+|+||++|++.+.... .+++++++|+||||+ +++.++. +..+...++ ++.|+|+||||++
T Consensus 153 ~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfL--Lg~Lk~lL~~rpdlKvILmSATid 229 (1294)
T PRK11131 153 KVRFNDQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFI--LGYLKELLPRRPDLKVIITSATID 229 (1294)
T ss_pred eecCccccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchH--HHHHHHhhhcCCCceEEEeeCCCC
Confidence 222 23345578999999999999887654 489999999999995 6665332 222333332 4689999999994
Q ss_pred ChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCC
Q psy6275 206 NASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKG 285 (391)
Q Consensus 206 ~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (391)
.+.+++++. ..| ++...++..++++++......+. ....
T Consensus 230 -~e~fs~~F~---~ap--vI~V~Gr~~pVei~y~p~~~~~~-------~~~~---------------------------- 268 (1294)
T PRK11131 230 -PERFSRHFN---NAP--IIEVSGRTYPVEVRYRPIVEEAD-------DTER---------------------------- 268 (1294)
T ss_pred -HHHHHHHcC---CCC--EEEEcCccccceEEEeecccccc-------hhhH----------------------------
Confidence 556777654 233 34445666777777664331100 0000
Q ss_pred CCCCCCcccHHHHH---HHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC-----------hHHHHHHHHHHHHHhhh
Q psy6275 286 GPKGGVQTNCFKIV---KMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-----------TEEVKLVDDVFSNAMDV 351 (391)
Q Consensus 286 ~~~~~~~~~~~~l~---~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-----------~~~r~~~~~~~~~~~~~ 351 (391)
+.+..++ ..+...+.+.+|||++++.+++.+++.|.+.++.. .+++..+... .+..++
T Consensus 269 -------d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~-~g~rkI 340 (1294)
T PRK11131 269 -------DQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS-HSGRRI 340 (1294)
T ss_pred -------HHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc-cCCeeE
Confidence 0111222 22223445689999999999999999999876542 1344444332 123344
Q ss_pred cchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 352 LSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 352 l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+ ..|+++++||+|+.
T Consensus 341 I-----------VATNIAEtSITIpg 355 (1294)
T PRK11131 341 V-----------LATNVAETSLTVPG 355 (1294)
T ss_pred E-----------EeccHHhhccccCc
Confidence 4 45569999999863
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.86 E-value=2e-20 Score=193.38 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=109.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcc------c
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFK------D 126 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~------~ 126 (391)
++.|+|+|..+......+..+++.||||+|||.+++.++...+..+ .+++|..||+++++++++++.+... .
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~ 363 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSPN 363 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5679999998865444567899999999999999988777655443 6899999999999999999876332 4
Q ss_pred ceeeeCCcccC-------------------------------C---CCCEEEEcHHHHHHH-HhcCccccCccc----eE
Q psy6275 127 VGLITGDVTIN-------------------------------P---SSSCLIMTTEILRNM-LYRGSEITREVG----WV 167 (391)
Q Consensus 127 v~~~~g~~~~~-------------------------------~---~~~I~v~Tp~~l~~~-l~~~~~~l~~~~----~l 167 (391)
+.+.||....+ . -.+|+|+|.++++.. +..+...++.++ +|
T Consensus 364 v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svv 443 (878)
T PRK09694 364 LILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVL 443 (878)
T ss_pred eEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeE
Confidence 66676654311 0 158999999887743 333333444444 89
Q ss_pred EEecccccCccccchhHHHHHHHh-CCCCcEEEEcccCCCh
Q psy6275 168 IFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSATIPNA 207 (391)
Q Consensus 168 ViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 207 (391)
||||+|.+.. .....+..+++.+ .....+|+||||+|..
T Consensus 444 IiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~ 483 (878)
T PRK09694 444 IVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPAT 483 (878)
T ss_pred EEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHH
Confidence 9999998732 3344455555543 3467899999999875
No 84
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=4.2e-21 Score=191.25 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=99.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|..+++.++.|+ +..+.||+|||+++.+|++.....+..++|++||++|+.|.++.+..++. .++.
T Consensus 100 lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~ 177 (656)
T PRK12898 100 LGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGC 177 (656)
T ss_pred hCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 57789999999999999998 99999999999999999998888899999999999999999999998876 6677
Q ss_pred eeCCccc-----CCCCCEEEEcHHHH-HHHHhcCc-------------------------cccCccceEEEeccccc
Q psy6275 130 ITGDVTI-----NPSSSCLIMTTEIL-RNMLYRGS-------------------------EITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~-----~~~~~I~v~Tp~~l-~~~l~~~~-------------------------~~l~~~~~lViDE~h~~ 175 (391)
+.|+... ...++|+++|...+ .+++.... ...+.+.+.|+||+|.+
T Consensus 178 i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSi 254 (656)
T PRK12898 178 VVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSV 254 (656)
T ss_pred EeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccce
Confidence 8787653 23689999998654 33433221 12356889999999975
No 85
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.86 E-value=8.3e-21 Score=185.46 Aligned_cols=257 Identities=20% Similarity=0.258 Sum_probs=189.0
Q ss_pred CCCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 48 EKPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 48 ~~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
.+.+..++|++|..|++++..|..+ .+-++.|.-|||||.+++++++..+..|.++..++||.-||.|.+..+.
T Consensus 253 ~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~ 332 (677)
T COG1200 253 AKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLR 332 (677)
T ss_pred HHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHH
Confidence 3556788999999999999988543 4679999999999999999999999999999999999999999999999
Q ss_pred Hhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 122 EQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
++++ .|.+++|...- +.+.+|+|+|..- .+....+.++.++|+||-|++ |..-+.
T Consensus 333 ~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL-----iQd~V~F~~LgLVIiDEQHRF-----GV~QR~ 402 (677)
T COG1200 333 KWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL-----IQDKVEFHNLGLVIIDEQHRF-----GVHQRL 402 (677)
T ss_pred HHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh-----hhcceeecceeEEEEeccccc-----cHHHHH
Confidence 9998 47778887652 3468999999963 344556889999999999964 777776
Q ss_pred HHHHhCC-CCcEEEEcccCC-ChHHHHHHhccccCCCeeEeeeCCCC---cCceEeeccCCCCCeeeeecCchhhhhchH
Q psy6275 187 TLILLSD-NVRFVFLSATIP-NASQFAQWVSHLHHQPCHVVYTDYRP---TPLQHYLFPNGGDGIHLIVDDNKFKEHNYQ 261 (391)
Q Consensus 187 i~~~~~~-~~~~i~~SAT~~-~~~~~~~~l~~~~~~~~~v~~~~~~~---~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~ 261 (391)
.+..-+. .+.++.||||+- ++-.+.-+ + ...+..-++-| .||..+++..... .
T Consensus 403 ~L~~KG~~~Ph~LvMTATPIPRTLAlt~f-g-----DldvS~IdElP~GRkpI~T~~i~~~~~----------------~ 460 (677)
T COG1200 403 ALREKGEQNPHVLVMTATPIPRTLALTAF-G-----DLDVSIIDELPPGRKPITTVVIPHERR----------------P 460 (677)
T ss_pred HHHHhCCCCCcEEEEeCCCchHHHHHHHh-c-----cccchhhccCCCCCCceEEEEeccccH----------------H
Confidence 6666666 689999999963 33222222 1 11222223333 2566665532210 0
Q ss_pred HHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchh--------hHHHHHHHhhcc---
Q psy6275 262 VAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKK--------DCEIYAMQMAKL--- 330 (391)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~--------~~~~la~~L~~~--- 330 (391)
.....+.+.+. ++.++.+-|+-.+ .|+.+++.|...
T Consensus 461 -------------------------------~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~ 507 (677)
T COG1200 461 -------------------------------EVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPE 507 (677)
T ss_pred -------------------------------HHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHccc
Confidence 11223333333 4669999998654 455666666642
Q ss_pred -------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCC
Q psy6275 331 -------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVK 380 (391)
Q Consensus 331 -------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~ 380 (391)
|-...++++.+++.|++ .+++|++| .+++.|||+++|.+
T Consensus 508 ~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaT-----------TVIEVGVdVPnATv 554 (677)
T COG1200 508 LKVGLVHGRMKPAEKDAVMEAFKEGEIDILVAT-----------TVIEVGVDVPNATV 554 (677)
T ss_pred ceeEEEecCCChHHHHHHHHHHHcCCCcEEEEe-----------eEEEecccCCCCeE
Confidence 33455899999999999 88999988 58999999999875
No 86
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.85 E-value=3.7e-20 Score=186.70 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=88.1
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cceee
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGLI 130 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~ 130 (391)
|..|+++|......+..| .++.++||+|||++|.+|++.....+..++|++|+++|+.|.++.+..+.. .++..
T Consensus 68 glrpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred CCCccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 444555555544444444 699999999999999999877666788899999999999999999887765 45554
Q ss_pred eCCcc---c-------CCCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEeccccc
Q psy6275 131 TGDVT---I-------NPSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 131 ~g~~~---~-------~~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
.++.. . ...++|+++||+++ .+++... ...++.+.++|+||||.|
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsI 207 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSV 207 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhH
Confidence 44311 1 13689999999998 4544321 234678999999999987
No 87
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=3e-20 Score=188.92 Aligned_cols=121 Identities=19% Similarity=0.234 Sum_probs=100.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|..+...+..|+ ++.+.||+|||+++.+|++.....+..+.|++||+.||.|.+..+..++. .+++
T Consensus 75 ~g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~ 152 (790)
T PRK09200 75 LGMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGL 152 (790)
T ss_pred hCCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 47789999999999888876 99999999999999999987666899999999999999999999998887 5677
Q ss_pred eeCCcc-c-----CCCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEecccccC
Q psy6275 130 ITGDVT-I-----NPSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~-~-----~~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~~ 176 (391)
+.|+.+ . ..+++|+++||+++ .+++... ...++.+.++|+||||.++
T Consensus 153 i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 153 NFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred EeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 777766 2 23589999999988 4444332 1356789999999999863
No 88
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.84 E-value=2.4e-20 Score=186.89 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=100.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|..+...+..|+ +..++||+|||+++.+|++.....+..+.|++||+.||.|.++.+..++. .++.
T Consensus 53 lg~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~ 130 (745)
T TIGR00963 53 LGMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGL 130 (745)
T ss_pred hCCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEE
Confidence 47789999999998888776 99999999999999999854334577899999999999999999999987 5666
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEecccccC
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~~ 176 (391)
++|+.... -.++|+++||+++ ++++..+ ...++.+.++|+||+|.++
T Consensus 131 i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 131 ILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred EeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 77765532 2579999999998 7777665 2356889999999999874
No 89
>KOG0351|consensus
Probab=99.84 E-value=2.9e-20 Score=191.82 Aligned_cols=252 Identities=15% Similarity=0.187 Sum_probs=176.8
Q ss_pred CCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 50 PAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 50 ~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
....+|.. +++-|.++|..++.|+++++.+|||.||++||.+|++-. ++-.|||.|..+|+..+...+....-...
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~---~gitvVISPL~SLm~DQv~~L~~~~I~a~ 332 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL---GGVTVVISPLISLMQDQVTHLSKKGIPAC 332 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc---CCceEEeccHHHHHHHHHHhhhhcCccee
Confidence 34456777 999999999999999999999999999999999997654 67899999999999998888855444555
Q ss_pred eeeCCccc-----------C--CCCCEEEEcHHHHHHH--HhcCccccCc---cceEEEecccccCccc--cchhHHHHH
Q psy6275 129 LITGDVTI-----------N--PSSSCLIMTTEILRNM--LYRGSEITRE---VGWVIFDEIHYMRDKE--RGYVWEETL 188 (391)
Q Consensus 129 ~~~g~~~~-----------~--~~~~I~v~Tp~~l~~~--l~~~~~~l~~---~~~lViDE~h~~~~~~--~~~~~~~i~ 188 (391)
.++++... . ...+|+..|||.+... +......+.. +.++|+||||++..|+ |.+.+..+.
T Consensus 333 ~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~ 412 (941)
T KOG0351|consen 333 FLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLG 412 (941)
T ss_pred eccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHH
Confidence 56665443 1 2467999999987742 1111222333 8899999999998875 555555443
Q ss_pred HHh--CCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHH
Q psy6275 189 ILL--SDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAM 264 (391)
Q Consensus 189 ~~~--~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 264 (391)
... -....++++|||.... +++.+.|+- ....++.......++.+.|..-.+.
T Consensus 413 ~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l---~~~~~~~~sfnR~NL~yeV~~k~~~-------------------- 469 (941)
T KOG0351|consen 413 LLRIRFPGVPFIALTATATERVREDVIRSLGL---RNPELFKSSFNRPNLKYEVSPKTDK-------------------- 469 (941)
T ss_pred HHHhhCCCCCeEEeehhccHHHHHHHHHHhCC---CCcceecccCCCCCceEEEEeccCc--------------------
Confidence 322 2348999999999654 778887753 2233454444455555555432110
Q ss_pred HHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHH-HcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------
Q psy6275 265 NVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIM-ERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET-------- 335 (391)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~-------- 335 (391)
.....+..... ..+.+.+||||.+|++|+.++..|++.|..+.
T Consensus 470 ----------------------------~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~ 521 (941)
T KOG0351|consen 470 ----------------------------DALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPP 521 (941)
T ss_pred ----------------------------cchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCH
Confidence 11223333333 34568999999999999999999999876654
Q ss_pred HHHHHHHHHHHH-Hhhhcchh
Q psy6275 336 EEVKLVDDVFSN-AMDVLSEE 355 (391)
Q Consensus 336 ~~r~~~~~~~~~-~~~~l~~~ 355 (391)
.+|..+...+-. .+.++++|
T Consensus 522 ~~R~~Vq~~w~~~~~~VivAT 542 (941)
T KOG0351|consen 522 KERETVQKAWMSDKIRVIVAT 542 (941)
T ss_pred HHHHHHHHHHhcCCCeEEEEE
Confidence 567777666655 67777766
No 90
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.84 E-value=1.4e-19 Score=191.66 Aligned_cols=259 Identities=15% Similarity=0.182 Sum_probs=164.5
Q ss_pred HHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc-cceeeeC-----
Q psy6275 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK-DVGLITG----- 132 (391)
Q Consensus 60 ~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g----- 132 (391)
....+.+..+.+++.++++|+||||||+.....++..- ...++++++.|.|-.+..++.++.+..+ .++...|
T Consensus 70 ~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~ 149 (1283)
T TIGR01967 70 AKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF 149 (1283)
T ss_pred HHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC
Confidence 33455666777888999999999999996543333321 2235788889999888888888777665 4443333
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc-cCccccchh-HHHHHHHhCCCCcEEEEcccCCChHHH
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY-MRDKERGYV-WEETLILLSDNVRFVFLSATIPNASQF 210 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~-~~~~~~~~~-~~~i~~~~~~~~~~i~~SAT~~~~~~~ 210 (391)
+...+.++.|.++|+|+|+..+.... .+..+++||+||+|+ +++.++... +..++.. .++.|+|+||||+. ...+
T Consensus 150 ~~~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~-rpdLKlIlmSATld-~~~f 226 (1283)
T TIGR01967 150 HDQVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR-RPDLKIIITSATID-PERF 226 (1283)
T ss_pred CcccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh-CCCCeEEEEeCCcC-HHHH
Confidence 33445678899999999999887654 488999999999995 665533322 2333322 35789999999994 5668
Q ss_pred HHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCC
Q psy6275 211 AQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGG 290 (391)
Q Consensus 211 ~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (391)
+++++. .| ++...++..+++.++....... .. .... ..
T Consensus 227 a~~F~~---ap--vI~V~Gr~~PVev~Y~~~~~~~-------~~-~~~~---~~-------------------------- 264 (1283)
T TIGR01967 227 SRHFNN---AP--IIEVSGRTYPVEVRYRPLVEEQ-------ED-DDLD---QL-------------------------- 264 (1283)
T ss_pred HHHhcC---CC--EEEECCCcccceeEEecccccc-------cc-hhhh---HH--------------------------
Confidence 887642 23 3455667777776665332110 00 0000 00
Q ss_pred CcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC-----------ChHHHHHHHHHHHHHhhhcchhhccC
Q psy6275 291 VQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN-----------ETEEVKLVDDVFSNAMDVLSEEDRKL 359 (391)
Q Consensus 291 ~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~-----------~~~~r~~~~~~~~~~~~~l~~~d~~~ 359 (391)
..+..++..+...+.+.+|||++++.+++.+++.|.+.++. ..+++..+ |+.. +.
T Consensus 265 --~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~v---f~~~---------~~ 330 (1283)
T TIGR01967 265 --EAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRV---FQPH---------SG 330 (1283)
T ss_pred --HHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHH---hCCC---------CC
Confidence 01112222222234468999999999999999999876543 12444443 2221 01
Q ss_pred cchHhHHHHHHhhhhhcc
Q psy6275 360 PQIENILPLLRRGIGIHH 377 (391)
Q Consensus 360 ~~~~~~~~~l~~GI~~~h 377 (391)
.++...|++.++||+|+.
T Consensus 331 rkIVLATNIAEtSLTIpg 348 (1283)
T TIGR01967 331 RRIVLATNVAETSLTVPG 348 (1283)
T ss_pred ceEEEeccHHHhccccCC
Confidence 234455579999999964
No 91
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.82 E-value=6.4e-19 Score=153.74 Aligned_cols=151 Identities=33% Similarity=0.428 Sum_probs=125.3
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcc-----cce
Q psy6275 57 VLDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFK-----DVG 128 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~ 128 (391)
+++++|.++++.+... +++++.+|||+|||.++..++...+..+ .+++|++|+++++.|+...+...+. ...
T Consensus 8 ~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T smart00487 8 PLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVG 87 (201)
T ss_pred CCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEE
Confidence 5999999999999888 9999999999999999998888887664 7899999999999999999998874 233
Q ss_pred eeeCCcc------cCCCC-CEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 129 LITGDVT------INPSS-SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 129 ~~~g~~~------~~~~~-~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
.+.+... ..... +++++|++.+.+.+.........++++|+||+|.+....+...+..++..++...+++++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~s 167 (201)
T smart00487 88 LYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLS 167 (201)
T ss_pred EeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEe
Confidence 3444332 22233 9999999999998887666677899999999999876456677777877777789999999
Q ss_pred ccCCCh
Q psy6275 202 ATIPNA 207 (391)
Q Consensus 202 AT~~~~ 207 (391)
||+++.
T Consensus 168 aT~~~~ 173 (201)
T smart00487 168 ATPPEE 173 (201)
T ss_pred cCCchh
Confidence 999865
No 92
>KOG0352|consensus
Probab=99.82 E-value=4.1e-19 Score=163.10 Aligned_cols=262 Identities=18% Similarity=0.219 Sum_probs=160.6
Q ss_pred CCCC--CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceee
Q psy6275 54 YPFV--LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLI 130 (391)
Q Consensus 54 ~~~~--~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~ 130 (391)
+|+. =++.|.+|+..+ ...+++.+++|||+||+++|.+|.+.. ++..+|+.|..+|+.++.+.+..+.-.+..+
T Consensus 15 FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQiDHL~~LKVp~~SL 91 (641)
T KOG0352|consen 15 FGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQIDHLKRLKVPCESL 91 (641)
T ss_pred hCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHHHHHHHhcCCchhHh
Confidence 4553 679999999976 556799999999999999999998765 6689999999999999999988876544444
Q ss_pred eCCcc-------------cCCCCCEEEEcHHHHHHHHh----cCccccCccceEEEecccccCccc--cchhHHHHHHH-
Q psy6275 131 TGDVT-------------INPSSSCLIMTTEILRNMLY----RGSEITREVGWVIFDEIHYMRDKE--RGYVWEETLIL- 190 (391)
Q Consensus 131 ~g~~~-------------~~~~~~I~v~Tp~~l~~~l~----~~~~~l~~~~~lViDE~h~~~~~~--~~~~~~~i~~~- 190 (391)
.+..+ ..++..+++.||+....-.. +....-..+.++|+||||++.+|+ |.+.+-.+=.+
T Consensus 92 NSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LR 171 (641)
T KOG0352|consen 92 NSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLR 171 (641)
T ss_pred cchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHH
Confidence 33322 23456789999986542211 111223468899999999999886 44443322222
Q ss_pred -hCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHh
Q psy6275 191 -LSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL 267 (391)
Q Consensus 191 -~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 267 (391)
.-.....+.+|||.... +++..-|. ..+|+.++....-.. +.+|.+. -..+-.+.+..+..+.
T Consensus 172 S~~~~vpwvALTATA~~~VqEDi~~qL~--L~~PVAiFkTP~FR~---NLFYD~~---------~K~~I~D~~~~LaDF~ 237 (641)
T KOG0352|consen 172 SVCPGVPWVALTATANAKVQEDIAFQLK--LRNPVAIFKTPTFRD---NLFYDNH---------MKSFITDCLTVLADFS 237 (641)
T ss_pred hhCCCCceEEeecccChhHHHHHHHHHh--hcCcHHhccCcchhh---hhhHHHH---------HHHHhhhHhHhHHHHH
Confidence 22468899999998765 55555443 345555543311111 1111000 0011111111111110
Q ss_pred hh-hhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHH
Q psy6275 268 AN-AGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEV 338 (391)
Q Consensus 268 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r 338 (391)
.. .+...+. +.-.+.-.+-.||||.||++||++|-.|...|+++. .+|
T Consensus 238 ~~~LG~~~~~-----------------------~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ER 294 (641)
T KOG0352|consen 238 SSNLGKHEKA-----------------------SQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKER 294 (641)
T ss_pred HHhcCChhhh-----------------------hcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchh
Confidence 00 0000000 000011135789999999999999999999888874 567
Q ss_pred HHHHHHH-HHHhhhcchh
Q psy6275 339 KLVDDVF-SNAMDVLSEE 355 (391)
Q Consensus 339 ~~~~~~~-~~~~~~l~~~ 355 (391)
..+.+.- ++.+-++.+|
T Consensus 295 TeVQe~WM~~~~PvI~AT 312 (641)
T KOG0352|consen 295 TEVQEKWMNNEIPVIAAT 312 (641)
T ss_pred HHHHHHHhcCCCCEEEEE
Confidence 7765544 4466666655
No 93
>KOG0949|consensus
Probab=99.81 E-value=3.6e-19 Score=177.35 Aligned_cols=160 Identities=36% Similarity=0.639 Sum_probs=132.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhccc-----
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFKD----- 126 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~----- 126 (391)
.+|.|..||.+.+..+..++..+++|||.+|||++..+++-..+. ..+.+++++|+++|++|+...+...+..
T Consensus 508 ~dF~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 508 HDFCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred hccCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 468899999999999999999999999999999998888777664 4688999999999999999888777631
Q ss_pred ----ceeeeCCcccCC-CCCEEEEcHHHHHHHHhc---CccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEE
Q psy6275 127 ----VGLITGDVTINP-SSSCLIMTTEILRNMLYR---GSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFV 198 (391)
Q Consensus 127 ----v~~~~g~~~~~~-~~~I~v~Tp~~l~~~l~~---~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 198 (391)
.+.++.+...+. +++|+|+-|+.+-+++.. ...+...++++|+||+|.+.....+..++.++...+ +.++
T Consensus 588 g~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~--CP~L 665 (1330)
T KOG0949|consen 588 GVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP--CPFL 665 (1330)
T ss_pred chhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcC--CCee
Confidence 112233333332 689999999999988876 345678999999999999988777888888777765 8899
Q ss_pred EEcccCCChHHHHHHhc
Q psy6275 199 FLSATIPNASQFAQWVS 215 (391)
Q Consensus 199 ~~SAT~~~~~~~~~~l~ 215 (391)
++|||+.|+..+..|+.
T Consensus 666 ~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 666 VLSATIGNPNLFQKWLN 682 (1330)
T ss_pred EEecccCCHHHHHHHHH
Confidence 99999999999999987
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=1.5e-18 Score=171.87 Aligned_cols=123 Identities=27% Similarity=0.242 Sum_probs=94.9
Q ss_pred EEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-cceeeeCCccc-----------CCCCCEE
Q psy6275 76 LVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGLITGDVTI-----------NPSSSCL 143 (391)
Q Consensus 76 li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g~~~~-----------~~~~~I~ 143 (391)
++.||||||||.+|+..+...+..+.+++|++|+++|+.|+++.+++.++ .+.+++|+.+. ..+.+|+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 47899999999999888878888899999999999999999999998876 67788887653 2357899
Q ss_pred EEcHHHHHHHHhcCccccCccceEEEecccccCccc-cchhH--H--HHHHHhCCCCcEEEEcccCC
Q psy6275 144 IMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE-RGYVW--E--ETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 144 v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~-~~~~~--~--~i~~~~~~~~~~i~~SAT~~ 205 (391)
|+|+..+. ..+.+++++|+||+|...... .++.+ . ........+.+++++|||++
T Consensus 81 VGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 81 IGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred ECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 99998663 247799999999999865322 12211 1 12222335789999999964
No 95
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=5.8e-19 Score=179.44 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=98.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-.--.+..|+ +..++||+|||++|.+|++.....+..+.|++|+++||.|.++.+..++. .+++
T Consensus 79 lg~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~ 156 (896)
T PRK13104 79 LGLRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGV 156 (896)
T ss_pred cCCCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEE
Confidence 46667788877666666665 89999999999999999987666777899999999999999999999887 5677
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcCc-ccc-----CccceEEEecccccC
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRGS-EIT-----REVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~~-~~l-----~~~~~lViDE~h~~~ 176 (391)
++|+.... -.++|+++||+++ ++++.... ..+ +.+.++|+||||.++
T Consensus 157 i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 157 IYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred EeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 77776532 2589999999999 88887662 223 589999999999863
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.80 E-value=8.1e-18 Score=178.84 Aligned_cols=149 Identities=21% Similarity=0.199 Sum_probs=104.6
Q ss_pred CCCcHHHHHHHHHHh----c-CCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 56 FVLDPFQKEAILCIE----N-NQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~----~-~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
+.++++|.+||..+. + .+..+++++||||||.+++..+...+.. ..++|+++|+++|+.|....|........
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 469999999998763 2 4679999999999999866555554433 47999999999999999999988743111
Q ss_pred ----eee-----CCcccCCCCCEEEEcHHHHHHHHhcC-----ccccCccceEEEecccccCc--cc-------------
Q psy6275 129 ----LIT-----GDVTINPSSSCLIMTTEILRNMLYRG-----SEITREVGWVIFDEIHYMRD--KE------------- 179 (391)
Q Consensus 129 ----~~~-----g~~~~~~~~~I~v~Tp~~l~~~l~~~-----~~~l~~~~~lViDE~h~~~~--~~------------- 179 (391)
.+. ++........|+|+|.+.+...+... ...+..+++||+||||+... ..
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~ 571 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLD 571 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhh
Confidence 111 11122345789999999987765321 12457899999999998421 00
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
+...+..++..+ +...|+|||||..
T Consensus 572 ~~~~yr~iL~yF--dA~~IGLTATP~r 596 (1123)
T PRK11448 572 YVSKYRRVLDYF--DAVKIGLTATPAL 596 (1123)
T ss_pred HHHHHHHHHhhc--CccEEEEecCCcc
Confidence 013455666654 3678999999963
No 97
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.80 E-value=2e-18 Score=173.69 Aligned_cols=252 Identities=18% Similarity=0.177 Sum_probs=174.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccce-----
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG----- 128 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~----- 128 (391)
.||.|+..|.-+...+..|+++-+.||||.|||+.-++..+.....+.++++++||..|+.|++++++++....+
T Consensus 79 ~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~ 158 (1187)
T COG1110 79 TGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVL 158 (1187)
T ss_pred hCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCccee
Confidence 478999999999999999999999999999999876555555556789999999999999999999999986222
Q ss_pred e-eeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-----
Q psy6275 129 L-ITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL----- 191 (391)
Q Consensus 129 ~-~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~----- 191 (391)
+ .|+..+. +.+.+|+|+|...+...+..-.. -+++++++|++|.++..+ ..++.++..+
T Consensus 159 ~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~--~kFdfifVDDVDA~Lkas--kNvDriL~LlGf~eE 234 (1187)
T COG1110 159 VVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK--LKFDFIFVDDVDAILKAS--KNVDRLLRLLGFSEE 234 (1187)
T ss_pred eeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc--cCCCEEEEccHHHHHhcc--ccHHHHHHHcCCCHH
Confidence 2 4555332 34689999999877765544322 279999999999886553 3333333222
Q ss_pred ---------------------------------------CCCCcEEEEcccCCCh----HHHHHHhccccCCCeeEeeeC
Q psy6275 192 ---------------------------------------SDNVRFVFLSATIPNA----SQFAQWVSHLHHQPCHVVYTD 228 (391)
Q Consensus 192 ---------------------------------------~~~~~~i~~SAT~~~~----~~~~~~l~~~~~~~~~v~~~~ 228 (391)
.+..+++..|||.... ..+.+.++. ...
T Consensus 235 ~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF---------evG 305 (1187)
T COG1110 235 VIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF---------EVG 305 (1187)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC---------ccC
Confidence 1236789999997543 333444331 111
Q ss_pred CCCc---CceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc
Q psy6275 229 YRPT---PLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER 305 (391)
Q Consensus 229 ~~~~---~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 305 (391)
.... ++...++.. .....++++++..
T Consensus 306 ~~~~~LRNIvD~y~~~---------------------------------------------------~~~e~~~elvk~l 334 (1187)
T COG1110 306 SGGEGLRNIVDIYVES---------------------------------------------------ESLEKVVELVKKL 334 (1187)
T ss_pred ccchhhhheeeeeccC---------------------------------------------------ccHHHHHHHHHHh
Confidence 1111 222221110 1123555555555
Q ss_pred CCCcEEEEEcc---hhhHHHHHHHhhccCCCCh---HH-HHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 306 NLAPVIVFSFS---KKDCEIYAMQMAKLNFNET---EE-VKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 306 ~~~~~iIF~~t---~~~~~~la~~L~~~g~~~~---~~-r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+. ..|||++. ++.++++++.|++.|+++. .. +.....+-++.+++|+.....+ ..|-||||.+|
T Consensus 335 G~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~~~~le~F~~GeidvLVGvAsyY-------G~lVRGlDLP~ 405 (1187)
T COG1110 335 GD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEKEEALEDFEEGEVDVLVGVASYY-------GVLVRGLDLPH 405 (1187)
T ss_pred CC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccchhhhhhhccCceeEEEEecccc-------cceeecCCchh
Confidence 53 69999999 9999999999999999986 22 4444444445889998776544 48899999987
No 98
>KOG0353|consensus
Probab=99.80 E-value=7e-19 Score=159.38 Aligned_cols=229 Identities=14% Similarity=0.177 Sum_probs=160.8
Q ss_pred CCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCC
Q psy6275 55 PFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGD 133 (391)
Q Consensus 55 ~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~ 133 (391)
..+ ++|.|..+|...+.+++.++..|||.||+++|.+|++-. ++-.||++|..+|++++.-.++.++-....+..+
T Consensus 91 ~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a---dg~alvi~plislmedqil~lkqlgi~as~lnan 167 (695)
T KOG0353|consen 91 HLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA---DGFALVICPLISLMEDQILQLKQLGIDASMLNAN 167 (695)
T ss_pred hHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc---CCceEeechhHHHHHHHHHHHHHhCcchhhccCc
Confidence 344 999999999999999999999999999999999997654 8889999999999999998888887544444333
Q ss_pred cc-------------cCCCCCEEEEcHHHHHH---HHhc--CccccCccceEEEecccccCccc--cchhHH--HHHHHh
Q psy6275 134 VT-------------INPSSSCLIMTTEILRN---MLYR--GSEITREVGWVIFDEIHYMRDKE--RGYVWE--ETLILL 191 (391)
Q Consensus 134 ~~-------------~~~~~~I~v~Tp~~l~~---~l~~--~~~~l~~~~~lViDE~h~~~~~~--~~~~~~--~i~~~~ 191 (391)
.+ .++...+++.||+.+.. ++.+ .......+.++-+||+|+..+|+ |.+.+. .++.+-
T Consensus 168 sske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrq 247 (695)
T KOG0353|consen 168 SSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQ 247 (695)
T ss_pred ccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHh
Confidence 32 13345789999998763 1221 22345678899999999998876 333333 233333
Q ss_pred CCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhh
Q psy6275 192 SDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLAN 269 (391)
Q Consensus 192 ~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 269 (391)
-++..++++|||..+. .+..+.+.. +.++.+......+++.+.+..-|+.+
T Consensus 248 f~~~~iigltatatn~vl~d~k~il~i---e~~~tf~a~fnr~nl~yev~qkp~n~------------------------ 300 (695)
T KOG0353|consen 248 FKGAPIIGLTATATNHVLDDAKDILCI---EAAFTFRAGFNRPNLKYEVRQKPGNE------------------------ 300 (695)
T ss_pred CCCCceeeeehhhhcchhhHHHHHHhH---HhhheeecccCCCCceeEeeeCCCCh------------------------
Confidence 3578999999998764 444444331 33444555555555555554333210
Q ss_pred hhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhHHHHHHHhhccCCCCh
Q psy6275 270 AGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDCEIYAMQMAKLNFNET 335 (391)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~ 335 (391)
++-+..+.+.++. ..++..||||-++++|+.++..|...|+.+.
T Consensus 301 ----------------------dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~ 345 (695)
T KOG0353|consen 301 ----------------------DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAG 345 (695)
T ss_pred ----------------------HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCcccc
Confidence 1123344444443 3467899999999999999999999988775
No 99
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.79 E-value=2.4e-18 Score=177.17 Aligned_cols=277 Identities=20% Similarity=0.194 Sum_probs=201.9
Q ss_pred CCCCcccccccccCCCCccCCCCCcHHHHHHHHHHhc----C--CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIEN----N--QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~----~--~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
..+|.+.+-.+....+...++|+-|+-|..||..+.+ + .|-++||.-|.|||.+++-++..++..+++|.|+||
T Consensus 572 ~~G~af~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVP 651 (1139)
T COG1197 572 KKGFAFPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVP 651 (1139)
T ss_pred ccCCCCCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 4577777777778889999999999999999998753 2 578999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhcc----cceeeeCCcc-----------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccc
Q psy6275 109 IKALSNQKYREFEEQFK----DVGLITGDVT-----------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIH 173 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~----~v~~~~g~~~-----------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h 173 (391)
|--|+.|.++.|++.+. ++..+.--.+ ...+.+|+|+|..-| +....+++++++||||-|
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL-----~kdv~FkdLGLlIIDEEq 726 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL-----SKDVKFKDLGLLIIDEEQ 726 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh-----CCCcEEecCCeEEEechh
Confidence 99999999999999998 3333333222 134689999999533 445568899999999999
Q ss_pred ccCccccchhHHHHHHHhCCCCcEEEEcccCC-ChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecC
Q psy6275 174 YMRDKERGYVWEETLILLSDNVRFVFLSATIP-NASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD 252 (391)
Q Consensus 174 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~ 252 (391)
+ ||.....-++.+..+.-++-||||+= ++- -....+. ++--.+-.+.....+++.|+...+..-
T Consensus 727 R-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL-~Msm~Gi--RdlSvI~TPP~~R~pV~T~V~~~d~~~------- 791 (1139)
T COG1197 727 R-----FGVKHKEKLKELRANVDVLTLSATPIPRTL-NMSLSGI--RDLSVIATPPEDRLPVKTFVSEYDDLL------- 791 (1139)
T ss_pred h-----cCccHHHHHHHHhccCcEEEeeCCCCcchH-HHHHhcc--hhhhhccCCCCCCcceEEEEecCChHH-------
Confidence 6 47777788888889999999999963 331 1122111 111122233333446777776433210
Q ss_pred chhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc--
Q psy6275 253 NKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL-- 330 (391)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~-- 330 (391)
.-.++.+.+. .++++..-+|..+..+.++..|+..
T Consensus 792 -----------------------------------------ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVP 828 (1139)
T COG1197 792 -----------------------------------------IREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVP 828 (1139)
T ss_pred -----------------------------------------HHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCC
Confidence 0113333332 2458999999999999999999875
Q ss_pred --------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCCCCcccc
Q psy6275 331 --------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLW 385 (391)
Q Consensus 331 --------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r 385 (391)
|-..+.+-+.++..|.+ ..++|++| ..++-||||++|+-=-..|
T Consensus 829 EarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T-----------TIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 829 EARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT-----------TIIETGIDIPNANTIIIER 881 (1139)
T ss_pred ceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe-----------eeeecCcCCCCCceEEEec
Confidence 43444566666666666 77888888 5899999999887543333
No 100
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=3e-18 Score=174.09 Aligned_cols=120 Identities=17% Similarity=0.190 Sum_probs=97.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHH-HHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIA-SSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~-~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
+|..|+++|.-.--.+..|+ +..+.||+|||+++.+|+. ..+ .+..+-|++|+..||.|.++.+..++. .++
T Consensus 78 lg~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL-~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~ 154 (830)
T PRK12904 78 LGMRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL-TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVG 154 (830)
T ss_pred hCCCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 57778899988876777765 8999999999999999985 555 566788999999999999999999887 567
Q ss_pred eeeCCcccC-----CCCCEEEEcHHHH-HHHHhcCc------cccCccceEEEecccccC
Q psy6275 129 LITGDVTIN-----PSSSCLIMTTEIL-RNMLYRGS------EITREVGWVIFDEIHYMR 176 (391)
Q Consensus 129 ~~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~~------~~l~~~~~lViDE~h~~~ 176 (391)
++.|+.+.. -.++|+++||+.+ ++++.... ..++.+.++|+||||.|+
T Consensus 155 ~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 155 VILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred EEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 777766543 2579999999999 78876554 235789999999999863
No 101
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.77 E-value=9.2e-18 Score=166.47 Aligned_cols=301 Identities=17% Similarity=0.150 Sum_probs=169.1
Q ss_pred CCcHHHHHHHHHH----hcC-CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcc--cc
Q psy6275 57 VLDPFQKEAILCI----ENN-QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFK--DV 127 (391)
Q Consensus 57 ~~~~~Q~~~i~~i----~~~-~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~--~v 127 (391)
.++.+|..||..+ .+| +.+++++.||+|||.+++..+-..++. -.|||+|+-+++|+.|.+..+..... ..
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~ 244 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTK 244 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCccc
Confidence 4999999999865 344 359999999999999876666555544 47999999999999999999999887 22
Q ss_pred eeeeCCcccCCCCCEEEEcHHHHHHHHhcC-----ccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcc
Q psy6275 128 GLITGDVTINPSSSCLIMTTEILRNMLYRG-----SEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSA 202 (391)
Q Consensus 128 ~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~-----~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 202 (391)
.....+......++|.++|++++....... +.....+|+||+||||+- .-..+..++..+.. -.+++||
T Consensus 245 ~n~i~~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg----i~~~~~~I~dYFdA--~~~gLTA 318 (875)
T COG4096 245 MNKIEDKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG----IYSEWSSILDYFDA--ATQGLTA 318 (875)
T ss_pred eeeeecccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh----HHhhhHHHHHHHHH--HHHhhcc
Confidence 222233333446799999999998776544 233456999999999973 33345567766653 2345599
Q ss_pred cCCChHHHHHHhcccc-CCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCC
Q psy6275 203 TIPNASQFAQWVSHLH-HQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKG 281 (391)
Q Consensus 203 T~~~~~~~~~~l~~~~-~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (391)
|+.+..+...+ .++ +.|++.+.-...- ...++++.+.-.+...++.+++..+.-..... ..+...-++.+..
T Consensus 319 TP~~~~d~~T~--~~F~g~Pt~~YsleeAV--~DGfLvpy~vi~i~~~~~~~G~~~~~~serek---~~g~~i~~dd~~~ 391 (875)
T COG4096 319 TPKETIDRSTY--GFFNGEPTYAYSLEEAV--EDGFLVPYKVIRIDTDFDLDGWKPDAGSEREK---LQGEAIDEDDQNF 391 (875)
T ss_pred Ccccccccccc--cccCCCcceeecHHHHh--hccccCCCCceEEeeeccccCcCcCccchhhh---hhccccCcccccc
Confidence 99776433332 233 5665554332110 00011100000111111111111111100000 0000010111111
Q ss_pred CCCCCCCCC-Cc---ccHHHHHH-HHHH--cC--CCcEEEEEcchhhHHHHHHHhhccCCCC-----------hHHHHHH
Q psy6275 282 GRKGGPKGG-VQ---TNCFKIVK-MIME--RN--LAPVIVFSFSKKDCEIYAMQMAKLNFNE-----------TEEVKLV 341 (391)
Q Consensus 282 ~~~~~~~~~-~~---~~~~~l~~-~l~~--~~--~~~~iIF~~t~~~~~~la~~L~~~g~~~-----------~~~r~~~ 341 (391)
..+-+-+.. .+ +.+...+. .+.. .+ .+||||||.+..+|+.++..|.+.-..- .++-+.
T Consensus 392 ~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~- 470 (875)
T COG4096 392 EARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQA- 470 (875)
T ss_pred cccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhHH-
Confidence 111111111 11 11222222 2322 22 4799999999999999999998741110 011122
Q ss_pred HHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 342 DDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 342 ~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.++.+.. ....|.|.++.++|.-|||++.+
T Consensus 471 ------~Id~f~~-ke~~P~IaitvdlL~TGiDvpev 500 (875)
T COG4096 471 ------LIDNFID-KEKYPRIAITVDLLTTGVDVPEV 500 (875)
T ss_pred ------HHHHHHh-cCCCCceEEehhhhhcCCCchhe
Confidence 2222222 34578889999999999999753
No 102
>KOG0951|consensus
Probab=99.75 E-value=1.5e-17 Score=169.52 Aligned_cols=260 Identities=23% Similarity=0.396 Sum_probs=190.6
Q ss_pred CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceeee
Q psy6275 58 LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLIT 131 (391)
Q Consensus 58 ~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~ 131 (391)
.+++|.++++.+ ..++++++.+|+|||||.++-+++++ -..-.++++++|..+.+..++..|.+.++ .+..++
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ 1222 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLT 1222 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecC
Confidence 789999999976 56789999999999999999888877 23457999999999999988888887776 444577
Q ss_pred CCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchh------HHHHHHHhCCCCcEEEEc
Q psy6275 132 GDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYV------WEETLILLSDNVRFVFLS 201 (391)
Q Consensus 132 g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~------~~~i~~~~~~~~~~i~~S 201 (391)
|+...+ ...+|+|+||+++..+ . ..+.+++.|.||.|.+.+ ..|.. ++.+...+.++.+++++|
T Consensus 1223 ge~s~~lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ir~v~ls 1296 (1674)
T KOG0951|consen 1223 GETSLDLKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKKIRVVALS 1296 (1674)
T ss_pred CccccchHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhheeEEEee
Confidence 766654 3689999999998655 2 577999999999999873 34443 445556677889999999
Q ss_pred ccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCC
Q psy6275 202 ATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKG 281 (391)
Q Consensus 202 AT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (391)
..+.+..++ ++ .....++.+.++.||.|++.++.- +....+...+..|-+
T Consensus 1297 ~~lana~d~---ig-~s~~~v~Nf~p~~R~~Pl~i~i~~--------------~~~~~~~~~~~am~~------------ 1346 (1674)
T KOG0951|consen 1297 SSLANARDL---IG-ASSSGVFNFSPSVRPVPLEIHIQS--------------VDISHFESRMLAMTK------------ 1346 (1674)
T ss_pred hhhccchhh---cc-ccccceeecCcccCCCceeEEEEE--------------eccchhHHHHHHhhh------------
Confidence 999998877 33 345678889999999999887763 334455555555543
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhcchhhccCcc
Q psy6275 282 GRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQ 361 (391)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~~~~~~~~~~l~~~d~~~~~ 361 (391)
.....+.+.. . .+++++||+++|++|..+|..|-...+.. +...+.....+ .|
T Consensus 1347 -----------~~~~ai~~~a-~-~~k~~~vf~p~rk~~~~~a~~~~~~s~~~--~~~~l~~~~e~-------~~----- 1399 (1674)
T KOG0951|consen 1347 -----------PTYTAIVRHA-G-NRKPAIVFLPTRKHARLVAVDLVTFSHAD--EPDYLLSELEE-------CD----- 1399 (1674)
T ss_pred -----------hHHHHHHHHh-c-CCCCeEEEeccchhhhhhhhccchhhccC--cHHHHHHHHhc-------ch-----
Confidence 1122333322 2 34699999999999999999998776655 33232222222 11
Q ss_pred hHhHHHHHHhhhhhccCCCCccc
Q psy6275 362 IENILPLLRRGIGIHHGVKPYGL 384 (391)
Q Consensus 362 ~~~~~~~l~~GI~~~h~~~~~~~ 384 (391)
-.+.+.|+.||+ |.||++.+
T Consensus 1400 -~~l~e~l~~gvg--~e~~s~~d 1419 (1674)
T KOG0951|consen 1400 -ETLRESLKHGVG--HEGLSSND 1419 (1674)
T ss_pred -Hhhhhccccccc--ccccCcch
Confidence 245678899999 88887543
No 103
>KOG0952|consensus
Probab=99.75 E-value=2.8e-19 Score=179.69 Aligned_cols=277 Identities=25% Similarity=0.385 Sum_probs=198.2
Q ss_pred CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcc----cceee
Q psy6275 58 LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFK----DVGLI 130 (391)
Q Consensus 58 ~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~ 130 (391)
+.|.|.+.+..+ .-+.++++-+|||+|||.++..++...+.. +.+++|++|.++|+..-.+.+..... ++.-+
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~ 1007 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIEL 1007 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEec
Confidence 666777776644 346789999999999999999998887754 57999999999999998888887765 34456
Q ss_pred eCCcccC----CCCCEEEEcHHHHHHHHh--cCccccCccceEEEecccccCccccchhHHHHHHH-------hCCCCcE
Q psy6275 131 TGDVTIN----PSSSCLIMTTEILRNMLY--RGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-------LSDNVRF 197 (391)
Q Consensus 131 ~g~~~~~----~~~~I~v~Tp~~l~~~l~--~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-------~~~~~~~ 197 (391)
+|+...+ ..++++|+||++...... ....++++++++|+||.|.+.+ ++++.++.+... .+...++
T Consensus 1008 tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~vr~ 1086 (1230)
T KOG0952|consen 1008 TGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEPVRY 1086 (1230)
T ss_pred cCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcchhh
Confidence 6766654 357899999999887665 5677899999999999998755 577776655443 2356888
Q ss_pred EEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccC
Q psy6275 198 VFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAG 277 (391)
Q Consensus 198 i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (391)
+++|..+.++.++++|++.... +.+.+..+|+|++.++-..++ ..+-..+..|+++..
T Consensus 1087 ~glsta~~na~dla~wl~~~~~---~nf~~svrpvp~~~~i~gfp~--------------~~~cprm~smnkpa~----- 1144 (1230)
T KOG0952|consen 1087 LGLSTALANANDLADWLNIKDM---YNFRPSVRPVPLEVHIDGFPG--------------QHYCPRMMSMNKPAF----- 1144 (1230)
T ss_pred hhHhhhhhccHHHHHHhCCCCc---CCCCcccccCCceEeecCCCc--------------hhcchhhhhcccHHH-----
Confidence 9999888899999999985432 667777888888888765443 122223333332111
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHH---HHHHHHHhhhcch
Q psy6275 278 DHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLV---DDVFSNAMDVLSE 354 (391)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~---~~~~~~~~~~l~~ 354 (391)
+.+ ....+..++|||+.++.+...-|..|..........++.. +..++..+....+
T Consensus 1145 -------------------qai--k~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~de~e~e~~~~~~~d 1203 (1230)
T KOG0952|consen 1145 -------------------QAI--KTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMDELELEIIMSKVRD 1203 (1230)
T ss_pred -------------------HHH--hcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCCHHHHHHHHHHhcc
Confidence 111 1234567999999999988887777766544443333322 2333333333343
Q ss_pred hhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 355 EDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 355 ~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
+ .+.-.+.+||+.||+|+.+.+|+
T Consensus 1204 ~--------~Lk~tl~Fgi~lhhagl~~~dr~ 1227 (1230)
T KOG0952|consen 1204 T--------NLKLTLPFGIGLHHAGLIENDRK 1227 (1230)
T ss_pred c--------chhhhhhhhhhhhhhhccccccc
Confidence 3 46678999999999999999886
No 104
>KOG0922|consensus
Probab=99.75 E-value=1.2e-16 Score=155.05 Aligned_cols=217 Identities=16% Similarity=0.292 Sum_probs=157.3
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHH-HHhcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceee-
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAS-SLKQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLI- 130 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~-~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~- 130 (391)
...+-.+.+..+.+++.+++.|+||||||+.....+.+ .....+++.|..|.|--+..+++++..-.+ .||..
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I 131 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI 131 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEE
Confidence 44555667778888999999999999999975444433 334556799999999888888888777665 34432
Q ss_pred eCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh------CCCCcEEEEcccC
Q psy6275 131 TGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL------SDNVRFVFLSATI 204 (391)
Q Consensus 131 ~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~------~~~~~~i~~SAT~ 204 (391)
.-+.....++.|.+.|.|.|++.+...+. +++++++|+||||+ +....+.++..+ +.+.++|+||||+
T Consensus 132 RFed~ts~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHE-----Rsl~TDiLlGlLKki~~~R~~LklIimSATl 205 (674)
T KOG0922|consen 132 RFEDSTSKDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHE-----RSLHTDILLGLLKKILKKRPDLKLIIMSATL 205 (674)
T ss_pred EecccCCCceeEEEecchHHHHHHhcCCc-cccccEEEEechhh-----hhhHHHHHHHHHHHHHhcCCCceEEEEeeee
Confidence 22333345789999999999988876654 88999999999995 233333333322 3568999999999
Q ss_pred CChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCC
Q psy6275 205 PNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRK 284 (391)
Q Consensus 205 ~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (391)
+.+.|.+|+.. +.++...+|..|++.++...+.. +|.
T Consensus 206 -da~kfS~yF~~-----a~i~~i~GR~fPVei~y~~~p~~---------dYv---------------------------- 242 (674)
T KOG0922|consen 206 -DAEKFSEYFNN-----APILTIPGRTFPVEILYLKEPTA---------DYV---------------------------- 242 (674)
T ss_pred -cHHHHHHHhcC-----CceEeecCCCCceeEEeccCCch---------hhH----------------------------
Confidence 67778888753 56777889999999888754322 111
Q ss_pred CCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 285 GGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 285 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
++.+..++++....+.+-+|||.+.+++.+.+++.|.+.
T Consensus 243 -------~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~ 281 (674)
T KOG0922|consen 243 -------DAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRER 281 (674)
T ss_pred -------HHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 123334555555566678999999999999999999874
No 105
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.74 E-value=1.5e-16 Score=162.69 Aligned_cols=217 Identities=20% Similarity=0.290 Sum_probs=163.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc-c----cee-e
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK-D----VGL-I 130 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~----v~~-~ 130 (391)
.+....+.+.++.+++.++++||||||||+.....+++.. ..++.+.++-|.|--|..++.++.+..+ + ||+ +
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 5566777778888899999999999999998777766654 4467999999999888888888887776 3 444 4
Q ss_pred eCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHH-------HHHHHhCCCCcEEEEccc
Q psy6275 131 TGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE-------ETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 131 ~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~-------~i~~~~~~~~~~i~~SAT 203 (391)
..+.....++.|-++|.|.|++.+..... ++.++++|+||+|+= ....+ .++...+.+.++|.||||
T Consensus 131 Rfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHER-----Sl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 131 RFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHER-----SLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred EeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhh-----hHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 44555677889999999999999887665 889999999999962 22322 233344557999999999
Q ss_pred CCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCC
Q psy6275 204 IPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGR 283 (391)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (391)
+ +.+.|+.+++. +.++...++..|++.++-.....+ +. .
T Consensus 205 l-d~~rfs~~f~~-----apvi~i~GR~fPVei~Y~~~~~~d---------~~---l----------------------- 243 (845)
T COG1643 205 L-DAERFSAYFGN-----APVIEIEGRTYPVEIRYLPEAEAD---------YI---L----------------------- 243 (845)
T ss_pred c-CHHHHHHHcCC-----CCEEEecCCccceEEEecCCCCcc---------hh---H-----------------------
Confidence 9 67778888753 567888899999998885443221 10 0
Q ss_pred CCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc
Q psy6275 284 KGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~ 329 (391)
.+.+...+......+.+.+|||.+...+.+.+++.|.+
T Consensus 244 --------~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~ 281 (845)
T COG1643 244 --------LDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEK 281 (845)
T ss_pred --------HHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHh
Confidence 12233445555555567999999999999999999987
No 106
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.72 E-value=1.6e-16 Score=137.28 Aligned_cols=142 Identities=25% Similarity=0.297 Sum_probs=101.4
Q ss_pred CCCcHHHHHHHHHHhc-------CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 56 FVLDPFQKEAILCIEN-------NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~-------~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
|+|+++|.+++..+.+ .+++++.+|||+|||.+++..+.+... ++++++|+..|+.|+.+.+..+.....
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~---~~l~~~p~~~l~~Q~~~~~~~~~~~~~ 78 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR---KVLIVAPNISLLEQWYDEFDDFGSEKY 78 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC---EEEEEESSHHHHHHHHHHHHHHSTTSE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc---ceeEecCHHHHHHHHHHHHHHhhhhhh
Confidence 4689999999998752 589999999999999998876666654 999999999999999999976665211
Q ss_pred eee---------CCc-------------ccCCCCCEEEEcHHHHHHHHhcC-----------ccccCccceEEEeccccc
Q psy6275 129 LIT---------GDV-------------TINPSSSCLIMTTEILRNMLYRG-----------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 129 ~~~---------g~~-------------~~~~~~~I~v~Tp~~l~~~l~~~-----------~~~l~~~~~lViDE~h~~ 175 (391)
... +.. ....+.++++.|.+.+....... .......+++|+||||++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~ 158 (184)
T PF04851_consen 79 NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHY 158 (184)
T ss_dssp EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCT
T ss_pred hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhc
Confidence 110 000 01235689999999988765431 123457889999999987
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.... .++.++. .....+++||||+.
T Consensus 159 ~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 159 PSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp HHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred CCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 4321 1555655 45678999999985
No 107
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.70 E-value=1.1e-15 Score=161.33 Aligned_cols=73 Identities=19% Similarity=0.121 Sum_probs=62.3
Q ss_pred ccCCCCccCCCCCcHHHHHHHH----HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q psy6275 46 SKEKPAREYPFVLDPFQKEAIL----CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYR 118 (391)
Q Consensus 46 ~~~~~~~~~~~~~~~~Q~~~i~----~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~ 118 (391)
.....+...||++++.|.+.+. .+.+++++++.||||+|||++|++|++.....+.+++|.+||++|..|+..
T Consensus 234 ~~~~~~~~~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~~~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 234 LFSKNIDRLGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAITEKPVVISTNTKVLQSQLLE 310 (850)
T ss_pred HHHHhhhhcCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHH
Confidence 3445666689999999998766 456788999999999999999999998876667899999999999999865
No 108
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=1e-16 Score=163.10 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=104.6
Q ss_pred cCCCC-C---cHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc---
Q psy6275 53 EYPFV-L---DPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--- 125 (391)
Q Consensus 53 ~~~~~-~---~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--- 125 (391)
..||. | +|+|.++++.+..++++++.++||+|||++|.+|++..+..+..++|++|+++|+.|..+.+..+..
T Consensus 84 ~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lG 163 (970)
T PRK12899 84 VSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLG 163 (970)
T ss_pred cccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 56775 6 9999999999999999999999999999999999997765566699999999999999999998876
Q ss_pred -cceeeeCCcccCC-----CCCEEEEcHHHH-HHHHhcCccccC-------ccceEEEecccccC
Q psy6275 126 -DVGLITGDVTINP-----SSSCLIMTTEIL-RNMLYRGSEITR-------EVGWVIFDEIHYMR 176 (391)
Q Consensus 126 -~v~~~~g~~~~~~-----~~~I~v~Tp~~l-~~~l~~~~~~l~-------~~~~lViDE~h~~~ 176 (391)
.++.+.|+..... .++|+|+||+++ ++++..+...++ .+.++|+||||.|+
T Consensus 164 LsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 164 LTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 5666777766432 589999999999 998887644443 56899999999874
No 109
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.69 E-value=6.2e-16 Score=127.02 Aligned_cols=132 Identities=27% Similarity=0.375 Sum_probs=101.1
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcc---cceeeeCCccc-------CCCC
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFK---DVGLITGDVTI-------NPSS 140 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~~~g~~~~-------~~~~ 140 (391)
+++++.+|||+|||.+++..+..... ...+++|++|++.++.|+...+..... .+...++.... ....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 47899999999999999888877764 468999999999999999999888873 45555554432 3467
Q ss_pred CEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 141 ~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
+|+++|++.+.............++++|+||+|.+....................+++++|||+
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 8999999999887766554566899999999999865433332212333445678999999996
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.66 E-value=9.1e-16 Score=158.83 Aligned_cols=282 Identities=17% Similarity=0.148 Sum_probs=165.2
Q ss_pred CcHHHHHHHHHHhc---CC-cEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcccc--
Q psy6275 58 LDPFQKEAILCIEN---NQ-SVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFKDV-- 127 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~---~~-~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~~v-- 127 (391)
..+.|..++..+.+ .. .+++.||||+|||.+.+.++...+.. ..+++++.|++.+++++++++...++.-
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 58999999987643 34 78999999999999998888877655 6899999999999999999999887622
Q ss_pred -ee-eeCCcccC----C-----------------CCCEEEEcHHHHHHHHhcCcccc----CccceEEEecccccCcccc
Q psy6275 128 -GL-ITGDVTIN----P-----------------SSSCLIMTTEILRNMLYRGSEIT----REVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 128 -~~-~~g~~~~~----~-----------------~~~I~v~Tp~~l~~~l~~~~~~l----~~~~~lViDE~h~~~~~~~ 180 (391)
+. .+|..... . -..+.++||............+. =..+++|+||+|.+.+...
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~ 355 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETM 355 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccch
Confidence 11 23332210 0 11345555554443222211111 1346899999999876532
Q ss_pred chhHHHHHHH-hCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcC-ceEeeccCCCCCeeeeecCchhh
Q psy6275 181 GYVWEETLIL-LSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTP-LQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 181 ~~~~~~i~~~-~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~-i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
...+..++.. ...+..+++||||+|.. +.+...+. ....+..... ..+ .....+.... . + .+.
T Consensus 356 ~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~----~~~~~~~~~~-~~~~~~e~~~~~~~---~--~---~~~ 422 (733)
T COG1203 356 LAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALG----KGREVVENAK-FCPKEDEPGLKRKE---R--V---DVE 422 (733)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHh----cccceecccc-cccccccccccccc---c--h---hhh
Confidence 2233333333 34578999999999876 33333332 1111111100 000 0000000000 0 0 000
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-- 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-- 334 (391)
. ..+ . ........ .-..+++++|-|||+..|.++...|+..+...
T Consensus 423 ~-~~~---~---------------------------~~~~~~~~--~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~L 469 (733)
T COG1203 423 D-GPQ---E---------------------------ELIELISE--EVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLL 469 (733)
T ss_pred h-hhh---H---------------------------hhhhcchh--hhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEE
Confidence 0 000 0 00001111 12346799999999999999999999887711
Q ss_pred ------hHHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhc-------cCCCCccccccccCC
Q psy6275 335 ------TEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIH-------HGVKPYGLWQSKKIN 391 (391)
Q Consensus 335 ------~~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~-------h~~~~~~~r~~~~~~ 391 (391)
...|....+.++... ...-..+.+.|++++.|+|+- .+.+++-++.+||||
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~------~~~~~~IvVaTQVIEagvDidfd~mITe~aPidSLIQR~GRv~ 533 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLF------KQNEGFIVVATQVIEAGVDIDFDVLITELAPIDSLIQRAGRVN 533 (733)
T ss_pred EecccchhhHHHHHHHHHHHH------hccCCeEEEEeeEEEEEeccccCeeeecCCCHHHHHHHHHHHh
Confidence 133444433333211 112223456668999999995 588889999999987
No 111
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.66 E-value=4.5e-15 Score=154.97 Aligned_cols=151 Identities=20% Similarity=0.184 Sum_probs=101.9
Q ss_pred CCCCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcc-ccee
Q psy6275 55 PFVLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFK-DVGL 129 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~ 129 (391)
...|.|+|..+...+.. ...+++.-.+|.|||..+.+.+...+..+ .++||++|. .|..||..++.+.+. ...+
T Consensus 150 ~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i 228 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSL 228 (956)
T ss_pred CCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEE
Confidence 34699999999877643 34789999999999998866665554443 699999997 899999999987765 4444
Q ss_pred eeCCc---------ccCCCCCEEEEcHHHHHHHHh-cCccccCccceEEEecccccCcc--ccchhHHHHHHHhCCCCcE
Q psy6275 130 ITGDV---------TINPSSSCLIMTTEILRNMLY-RGSEITREVGWVIFDEIHYMRDK--ERGYVWEETLILLSDNVRF 197 (391)
Q Consensus 130 ~~g~~---------~~~~~~~I~v~Tp~~l~~~l~-~~~~~l~~~~~lViDE~h~~~~~--~~~~~~~~i~~~~~~~~~~ 197 (391)
+.++. ......+++|++.+.+...-. .....-..++++|+||||++... .....+..+.........+
T Consensus 229 ~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~ 308 (956)
T PRK04914 229 FDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGV 308 (956)
T ss_pred EcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCE
Confidence 43322 111246799999987764110 01111237899999999998521 1122233333333344678
Q ss_pred EEEcccCCC
Q psy6275 198 VFLSATIPN 206 (391)
Q Consensus 198 i~~SAT~~~ 206 (391)
+++||||-.
T Consensus 309 LLLTATP~q 317 (956)
T PRK04914 309 LLLTATPEQ 317 (956)
T ss_pred EEEEcCccc
Confidence 999999974
No 112
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=9.5e-16 Score=155.85 Aligned_cols=121 Identities=15% Similarity=0.147 Sum_probs=95.1
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-.--.+..|+ +..++||.|||+++.+|++.....+..|.|++|+..||.+-.+.+..++. .++.
T Consensus 79 lgm~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~ 156 (908)
T PRK13107 79 FEMRHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGI 156 (908)
T ss_pred hCCCcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 46667788876655555555 89999999999999999887767777899999999999999999888877 5555
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcC-ccc-----cCccceEEEecccccC
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRG-SEI-----TREVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~-~~~-----l~~~~~lViDE~h~~~ 176 (391)
+.++.... -.++|+++||+.+ ++++..+ ... .+.+.++|+||+|.++
T Consensus 157 i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 157 NVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred ecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 66655432 1589999999998 7777655 212 2688999999999864
No 113
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.64 E-value=2.3e-14 Score=144.66 Aligned_cols=142 Identities=27% Similarity=0.287 Sum_probs=114.1
Q ss_pred CCcHHHHHHHHHHhcC----CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-cceeee
Q psy6275 57 VLDPFQKEAILCIENN----QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGLIT 131 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~----~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~ 131 (391)
.+++-|..++..+... ...++.|-||||||.+|+-.+-..+.+|.++|+++|..+|..|+.++|+..++ ++.++|
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 4889999999988654 67999999999999999999999999999999999999999999999999998 888888
Q ss_pred CCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC--c-cccchhHHH--HHHHhCCCC
Q psy6275 132 GDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR--D-KERGYVWEE--TLILLSDNV 195 (391)
Q Consensus 132 g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~--~-~~~~~~~~~--i~~~~~~~~ 195 (391)
++.+. +.+..|+|+|-.-++ .++++++++|+||-|.-. + .+.....+. +.+.-..++
T Consensus 278 S~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~ 350 (730)
T COG1198 278 SGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENA 350 (730)
T ss_pred ccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCC
Confidence 87763 346789999986543 357899999999999642 1 111222222 222333579
Q ss_pred cEEEEcccCC
Q psy6275 196 RFVFLSATIP 205 (391)
Q Consensus 196 ~~i~~SAT~~ 205 (391)
++|+-|||++
T Consensus 351 pvvLgSATPS 360 (730)
T COG1198 351 PVVLGSATPS 360 (730)
T ss_pred CEEEecCCCC
Confidence 9999999985
No 114
>KOG0926|consensus
Probab=99.60 E-value=1.9e-14 Score=141.61 Aligned_cols=214 Identities=18% Similarity=0.215 Sum_probs=144.8
Q ss_pred HHHHHhcCCcEEEEecCCcchHHHHHHHHHHH-Hh-----cCCeEEEEcccHHHHHHHHHHHHHhcc----ccee-eeCC
Q psy6275 65 AILCIENNQSVLVSAHTSAGKTVVAEYAIASS-LK-----QSQRVIYTTPIKALSNQKYREFEEQFK----DVGL-ITGD 133 (391)
Q Consensus 65 ~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~-l~-----~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~-~~g~ 133 (391)
...+|..+.-++|+|.||||||+.....+..+ .. .++-+=|..|.|..+..+++++..-++ .|+. +.-+
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 34456677789999999999999754444332 21 245677888999877777766655443 4544 3345
Q ss_pred cccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh----------C------CCCcE
Q psy6275 134 VTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL----------S------DNVRF 197 (391)
Q Consensus 134 ~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~----------~------~~~~~ 197 (391)
....+.+.|.++|.|.|+.-+.+.. .|..++.+|+||||.- ....+.++..+ . ...++
T Consensus 344 ~ti~e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHER-----SvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKL 417 (1172)
T KOG0926|consen 344 GTIGEDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHER-----SVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKL 417 (1172)
T ss_pred cccCCCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhc-----cchHHHHHHHHHHHHHHHHHHhhhhcccCceeE
Confidence 5667789999999999998887655 3789999999999963 22222222211 1 25789
Q ss_pred EEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccC
Q psy6275 198 VFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAG 277 (391)
Q Consensus 198 i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (391)
|+||||+. ..+|.+.- .++..+..++..+.|..|+..++-.-..+ +|.
T Consensus 418 IIMSATLR-VsDFtenk-~LFpi~pPlikVdARQfPVsIHF~krT~~---------DYi--------------------- 465 (1172)
T KOG0926|consen 418 IIMSATLR-VSDFTENK-RLFPIPPPLIKVDARQFPVSIHFNKRTPD---------DYI--------------------- 465 (1172)
T ss_pred EEEeeeEE-ecccccCc-eecCCCCceeeeecccCceEEEeccCCCc---------hHH---------------------
Confidence 99999994 33454322 23344445777888888888777532211 111
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 278 DHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
.+......++.+.-+.+.+|||+....+++.|++.|++.
T Consensus 466 --------------~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 466 --------------AEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred --------------HHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhh
Confidence 122335555666667778999999999999999999874
No 115
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.59 E-value=7.5e-15 Score=117.95 Aligned_cols=134 Identities=19% Similarity=0.238 Sum_probs=85.4
Q ss_pred cCCcEEEEecCCcchHHHH-HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVA-EYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~-~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
+|+-.++-.+||+|||.-. ...+.+.++.+.|+|||.|||.++.++.+.++.....+....-.........|-++|+..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at 82 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT 82 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH
Confidence 4566789999999999964 445566888999999999999999999988875532221111111223456789999999
Q ss_pred HHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh--CCCCcEEEEcccCCCh
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL--SDNVRFVFLSATIPNA 207 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~ 207 (391)
+..++.+ +..+.+++++|+||||..... .-.....+..+ .....+|+||||+|..
T Consensus 83 ~~~~~~~-p~~~~~yd~II~DEcH~~Dp~--sIA~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 83 YGHFLLN-PCRLKNYDVIIMDECHFTDPT--SIAARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp HHHHHHT-SSCTTS-SEEEECTTT--SHH--HHHHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred HHHHhcC-cccccCccEEEEeccccCCHH--HHhhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 8887766 555789999999999986433 22222333322 2346899999999875
No 116
>KOG0920|consensus
Probab=99.58 E-value=1.7e-13 Score=140.22 Aligned_cols=252 Identities=17% Similarity=0.170 Sum_probs=156.2
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-h--cCCeEEEEcccHHHHHHHHHHHHHhcc-----ccee
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-K--QSQRVIYTTPIKALSNQKYREFEEQFK-----DVGL 129 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~--~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~ 129 (391)
.+..+.+.+.++.+++.++++|.||||||+.....++... . ...++++..|.|--|..+++++..--+ .||.
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 5567778888999999999999999999998766666653 2 356899999999887777777665543 3333
Q ss_pred -eeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-cccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 130 -ITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD-KERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 130 -~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
+..+......+.+++||.|.+++.+.. ...+..+..+|+||+|+-.- .++--.+-..+....++.++|+||||+ +.
T Consensus 254 qvrl~~~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~-da 331 (924)
T KOG0920|consen 254 QVRLESKRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATL-DA 331 (924)
T ss_pred EEeeecccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeec-ch
Confidence 222333444588999999999999877 44578999999999997432 212222222222335789999999999 57
Q ss_pred HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCC
Q psy6275 208 SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGP 287 (391)
Q Consensus 208 ~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (391)
+.|..|++ .+.++...++..|+..++...--... .|........ .....+ .......+--.
T Consensus 332 e~fs~YF~-----~~pvi~i~grtfpV~~~fLEDil~~~-------~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~ 392 (924)
T KOG0920|consen 332 ELFSDYFG-----GCPVITIPGRTFPVKEYFLEDILSKT-------GYVSEDDSAR--SGPERS-----QLRLARLKLWE 392 (924)
T ss_pred HHHHHHhC-----CCceEeecCCCcchHHHHHHHHHHHh-------cccccccccc--cccccC-----ccccccchhcc
Confidence 77888876 34567777888887766642110000 0000000000 000000 00000000000
Q ss_pred CCCCcccHHHHHHHHHHcC-CCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 288 KGGVQTNCFKIVKMIMERN-LAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 288 ~~~~~~~~~~l~~~l~~~~-~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
.+.-.+.+..+++.+...+ .+.+|||.+...+...+...|...
T Consensus 393 ~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~ 436 (924)
T KOG0920|consen 393 PEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVN 436 (924)
T ss_pred ccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhc
Confidence 0011123344444444433 578999999999999999999753
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.58 E-value=1.7e-13 Score=140.68 Aligned_cols=144 Identities=22% Similarity=0.234 Sum_probs=98.8
Q ss_pred CcHHHHHHHHHH----hc------CCcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCI----EN------NQSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i----~~------~~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
++++|..|+..+ .+ .+..+++.+||||||++.+..+...+ ....++|+++|+.+|..|+.+.|.....
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 889999999865 22 35799999999999998776665544 3467999999999999999999998874
Q ss_pred cceeeeCCcc------cCCCCCEEEEcHHHHHHHHhcCccc--cCcc-ceEEEecccccCccccchhHHHHH-HHhCCCC
Q psy6275 126 DVGLITGDVT------INPSSSCLIMTTEILRNMLYRGSEI--TREV-GWVIFDEIHYMRDKERGYVWEETL-ILLSDNV 195 (391)
Q Consensus 126 ~v~~~~g~~~------~~~~~~I~v~Tp~~l~~~l~~~~~~--l~~~-~~lViDE~h~~~~~~~~~~~~~i~-~~~~~~~ 195 (391)
......+... ...+..|+|+|.+.+...+...... ...- .+||+||||+... + .+...+ ..++ +.
T Consensus 319 ~~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~---~-~~~~~l~~~~p-~a 393 (667)
T TIGR00348 319 DCAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY---G-ELAKNLKKALK-NA 393 (667)
T ss_pred CCCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc---h-HHHHHHHhhCC-CC
Confidence 2111111100 1234689999999997644332111 1111 2899999998632 2 333334 4454 57
Q ss_pred cEEEEcccCCC
Q psy6275 196 RFVFLSATIPN 206 (391)
Q Consensus 196 ~~i~~SAT~~~ 206 (391)
.+++|||||-.
T Consensus 394 ~~lGfTaTP~~ 404 (667)
T TIGR00348 394 SFFGFTGTPIF 404 (667)
T ss_pred cEEEEeCCCcc
Confidence 89999999964
No 118
>KOG1123|consensus
Probab=99.55 E-value=1.2e-14 Score=136.33 Aligned_cols=268 Identities=16% Similarity=0.197 Sum_probs=169.2
Q ss_pred CCcccccccccCCCCccCCCCCcHHHHHHHHHHhc---CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIEN---NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~---~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
+|..-...+.+...|+... .++|+|.+.+..+.. .++.+|+.|.|+|||++-+.++... ..++||++.+-.-+
T Consensus 283 DFRND~~npdl~idLKPst-~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti---kK~clvLcts~VSV 358 (776)
T KOG1123|consen 283 DFRNDNVNPDLDIDLKPST-QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI---KKSCLVLCTSAVSV 358 (776)
T ss_pred ccccCCCCCCCCcCcCccc-ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee---cccEEEEecCccCH
Confidence 5555566666655444332 399999999998853 3678999999999999866555443 67899999999999
Q ss_pred HHHHHHHHHhcc----cceeeeCCccc--CCCCCEEEEcHHHHHHHHhcCc--------cccCccceEEEecccccCccc
Q psy6275 114 NQKYREFEEQFK----DVGLITGDVTI--NPSSSCLIMTTEILRNMLYRGS--------EITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 114 ~q~~~~~~~~~~----~v~~~~g~~~~--~~~~~I~v~Tp~~l~~~l~~~~--------~~l~~~~~lViDE~h~~~~~~ 179 (391)
.||..+|..+.. .+..++++... ...+.|+|+|+.++..--.+.. ..-+.++++++||+|.+...
T Consensus 359 eQWkqQfk~wsti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~- 437 (776)
T KOG1123|consen 359 EQWKQQFKQWSTIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK- 437 (776)
T ss_pred HHHHHHHHhhcccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH-
Confidence 999999998876 56677776654 3467899999987653221110 11247899999999998654
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCChHH-H-------------HHHhccccCCCeeEeeeCCCCcCceEeeccCCCCC
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNASQ-F-------------AQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDG 245 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~-~-------------~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~ 245 (391)
.++.++......+ -+++|||+-.+.+ + ++|+.-..++.+.-+.+.+ ++++...
T Consensus 438 ---MFRRVlsiv~aHc-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaE---------VWCpMt~ 504 (776)
T KOG1123|consen 438 ---MFRRVLSIVQAHC-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAE---------VWCPMTP 504 (776)
T ss_pred ---HHHHHHHHHHHHh-hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeee---------eecCCCH
Confidence 3444444433333 3689999876522 2 2333322222222222221 2222210
Q ss_pred eeeeecCchhhhhch--HHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHH
Q psy6275 246 IHLIVDDNKFKEHNY--QVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIY 323 (391)
Q Consensus 246 ~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~l 323 (391)
-++ ..|..... ..++..|+. .....++-|++....+ +.++|||..+.-....+
T Consensus 505 eFy----~eYL~~~t~kr~lLyvMNP--------------------~KFraCqfLI~~HE~R-gDKiIVFsDnvfALk~Y 559 (776)
T KOG1123|consen 505 EFY----REYLRENTRKRMLLYVMNP--------------------NKFRACQFLIKFHERR-GDKIIVFSDNVFALKEY 559 (776)
T ss_pred HHH----HHHHhhhhhhhheeeecCc--------------------chhHHHHHHHHHHHhc-CCeEEEEeccHHHHHHH
Confidence 000 01111111 111112211 0013466777776665 46999999999999999
Q ss_pred HHHhhc---cCCCChHHHHHHHHHHHH
Q psy6275 324 AMQMAK---LNFNETEEVKLVDDVFSN 347 (391)
Q Consensus 324 a~~L~~---~g~~~~~~r~~~~~~~~~ 347 (391)
|-.|.+ +|-..+.+|..|.+.|+-
T Consensus 560 Aikl~KpfIYG~Tsq~ERm~ILqnFq~ 586 (776)
T KOG1123|consen 560 AIKLGKPFIYGPTSQNERMKILQNFQT 586 (776)
T ss_pred HHHcCCceEECCCchhHHHHHHHhccc
Confidence 999988 588888999999888875
No 119
>KOG0923|consensus
Probab=99.54 E-value=1.2e-13 Score=133.69 Aligned_cols=216 Identities=15% Similarity=0.249 Sum_probs=149.3
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHH-HH-hcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceee
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAS-SL-KQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLI 130 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~-~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~ 130 (391)
.+++-.+.+.++..++.++|.|.||||||+.....+.. .. +.+.++-+..|.|.-|..++.++.+-.+ .||..
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYs 345 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYS 345 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceE
Confidence 45666777888899999999999999999974333322 22 3345599999999999999888777654 23331
Q ss_pred eC-CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH------HHhCCCCcEEEEccc
Q psy6275 131 TG-DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL------ILLSDNVRFVFLSAT 203 (391)
Q Consensus 131 ~g-~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~------~~~~~~~~~i~~SAT 203 (391)
.- ......++-|-++|.|+|++-+...+. |.+++++|+||||.- .-..+.++ ..++++.+++++|||
T Consensus 346 IRFEdcTSekTvlKYMTDGmLlREfL~epd-LasYSViiiDEAHER-----TL~TDILfgLvKDIar~RpdLKllIsSAT 419 (902)
T KOG0923|consen 346 IRFEDCTSEKTVLKYMTDGMLLREFLSEPD-LASYSVIIVDEAHER-----TLHTDILFGLVKDIARFRPDLKLLISSAT 419 (902)
T ss_pred EEeccccCcceeeeeecchhHHHHHhcccc-ccceeEEEeehhhhh-----hhhhhHHHHHHHHHHhhCCcceEEeeccc
Confidence 11 122234567889999999987766554 789999999999952 22222222 234578999999999
Q ss_pred CCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCC
Q psy6275 204 IPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGR 283 (391)
Q Consensus 204 ~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (391)
+ +++.|..|++ .+.+|...+|..|+..++-..+.. .+..
T Consensus 420 ~-DAekFS~fFD-----dapIF~iPGRRyPVdi~Yt~~PEA--------------dYld--------------------- 458 (902)
T KOG0923|consen 420 M-DAEKFSAFFD-----DAPIFRIPGRRYPVDIFYTKAPEA--------------DYLD--------------------- 458 (902)
T ss_pred c-CHHHHHHhcc-----CCcEEeccCcccceeeecccCCch--------------hHHH---------------------
Confidence 9 6777888875 345677788888988888655532 1111
Q ss_pred CCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc
Q psy6275 284 KGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~ 329 (391)
..+..++++....+.+-+|||....++.+...+.|..
T Consensus 459 ---------Aai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~ 495 (902)
T KOG0923|consen 459 ---------AAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKE 495 (902)
T ss_pred ---------HHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHH
Confidence 1122344444445567899999999988887777754
No 120
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=9e-14 Score=141.17 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=94.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|++.|.-.--.+..|+ +....||+|||+++.+|+......|..|-+++|+.-||.|-+..+..++. .+++
T Consensus 77 ~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~ 154 (796)
T PRK12906 77 LGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGL 154 (796)
T ss_pred hCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEE
Confidence 46778999988877777776 99999999999999999888888899999999999999999999998887 5666
Q ss_pred eeCCcccC-----CCCCEEEEcHHHHH-HHHhcC------ccccCccceEEEeccccc
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEILR-NMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l~-~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
++++.+.. -.++|+++|...+- +++... ....+.+.+.|+||+|.+
T Consensus 155 i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSi 212 (796)
T PRK12906 155 NLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSI 212 (796)
T ss_pred eCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhe
Confidence 76665432 25799999985432 233221 123457889999999976
No 121
>KOG0924|consensus
Probab=99.52 E-value=1.8e-13 Score=132.80 Aligned_cols=172 Identities=17% Similarity=0.202 Sum_probs=120.3
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCcchHHHHH-HHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-----cceeeeC
Q psy6275 59 DPFQKEAILCIENNQSVLVSAHTSAGKTVVAE-YAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-----DVGLITG 132 (391)
Q Consensus 59 ~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~-~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~g 132 (391)
...+.+.+..+..++.++++|.||||||+... +........++-+-+..|.|..|..+++++.+-.+ .||...-
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIR 437 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIR 437 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEE
Confidence 34555666667788899999999999999753 33333445567888999999999999998887764 3443222
Q ss_pred Cc-ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHH------HhCCCCcEEEEcccCC
Q psy6275 133 DV-TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI------LLSDNVRFVFLSATIP 205 (391)
Q Consensus 133 ~~-~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~------~~~~~~~~i~~SAT~~ 205 (391)
.. ...+.+.|-++|.+.|++...... .|.+++++|+||||+- ....+.++. ..+.+.++|.+|||+
T Consensus 438 FEdvT~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHER-----slNtDilfGllk~~larRrdlKliVtSATm- 510 (1042)
T KOG0924|consen 438 FEDVTSEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHER-----SLNTDILFGLLKKVLARRRDLKLIVTSATM- 510 (1042)
T ss_pred eeecCCCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhc-----ccchHHHHHHHHHHHHhhccceEEEeeccc-
Confidence 11 123567799999999886544333 4679999999999963 222222221 123579999999999
Q ss_pred ChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCC
Q psy6275 206 NASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNG 242 (391)
Q Consensus 206 ~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~ 242 (391)
+.+.|+.|++. +..+.-.+|..|++..+...+
T Consensus 511 ~a~kf~nfFgn-----~p~f~IpGRTyPV~~~~~k~p 542 (1042)
T KOG0924|consen 511 DAQKFSNFFGN-----CPQFTIPGRTYPVEIMYTKTP 542 (1042)
T ss_pred cHHHHHHHhCC-----CceeeecCCccceEEEeccCc
Confidence 77779988763 345666788888887776544
No 122
>KOG0925|consensus
Probab=99.44 E-value=1.4e-12 Score=122.24 Aligned_cols=236 Identities=16% Similarity=0.228 Sum_probs=148.8
Q ss_pred CCcccccccccCCCCccCC-CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHH-HHhcCCeEEEEcccHHHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYP-FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAS-SLKQSQRVIYTTPIKALSN 114 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~-~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~-~l~~~~~vlvl~P~~~L~~ 114 (391)
.|...+..+...+-+++.- ...+..+.+.+..+.+++-++++|.||||||+.....++. .+.....|.+..|.|.-+.
T Consensus 26 pf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaam 105 (699)
T KOG0925|consen 26 PFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAM 105 (699)
T ss_pred CCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHH
Confidence 4455555554444333322 2345566666677788999999999999999875444433 3344578999999999999
Q ss_pred HHHHHHHHhcc-cceeeeCCccc-----CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH
Q psy6275 115 QKYREFEEQFK-DVGLITGDVTI-----NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 115 q~~~~~~~~~~-~v~~~~g~~~~-----~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
+++.++.+-.. .+|--.|-.-. ..++-+-++|.++|++.....+ .+..++++|+||||+- ....+.++
T Consensus 106 sva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahER-----tlATDiLm 179 (699)
T KOG0925|consen 106 SVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHER-----TLATDILM 179 (699)
T ss_pred HHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCc-ccccccEEEechhhhh-----hHHHHHHH
Confidence 99988877654 22222222111 1223345778888776665554 3789999999999952 22222222
Q ss_pred HH------hCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHH
Q psy6275 189 IL------LSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQV 262 (391)
Q Consensus 189 ~~------~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 262 (391)
.. .+++.++|.||||+ ....|..|++ +. .+....+ ..|++.++...+.+ +|
T Consensus 180 Gllk~v~~~rpdLk~vvmSatl-~a~Kfq~yf~----n~-Pll~vpg-~~PvEi~Yt~e~er---------Dy------- 236 (699)
T KOG0925|consen 180 GLLKEVVRNRPDLKLVVMSATL-DAEKFQRYFG----NA-PLLAVPG-THPVEIFYTPEPER---------DY------- 236 (699)
T ss_pred HHHHHHHhhCCCceEEEeeccc-chHHHHHHhC----CC-CeeecCC-CCceEEEecCCCCh---------hH-------
Confidence 21 13589999999999 4444666654 22 2333333 55677766543322 11
Q ss_pred HHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc
Q psy6275 263 AMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK 329 (391)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~ 329 (391)
.+..+..++++......+-++||....++.+..++.+..
T Consensus 237 ----------------------------lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~r 275 (699)
T KOG0925|consen 237 ----------------------------LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISR 275 (699)
T ss_pred ----------------------------HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHH
Confidence 123344666766666667899999999998888888864
No 123
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.35 E-value=1.4e-10 Score=122.27 Aligned_cols=152 Identities=11% Similarity=0.088 Sum_probs=104.9
Q ss_pred CCcHHHHHHHHHHh----cCCcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHhcc--cc
Q psy6275 57 VLDPFQKEAILCIE----NNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQKYREFEEQFK--DV 127 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~----~~~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v 127 (391)
++++||.+++..+. .+.+.|++-.+|.|||+..+..+.... ...+.+|||+|. ++..+|...+.+++. .+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 58999999998763 578899999999999997654433221 124679999995 677889999999887 45
Q ss_pred eeeeCCccc----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcE
Q psy6275 128 GLITGDVTI----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRF 197 (391)
Q Consensus 128 ~~~~g~~~~----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 197 (391)
..++|+... ..+.+|+|+|++.+......-. --.+++||+||||.+-.. .......+..+.. ...
T Consensus 248 ~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~--k~~W~~VIvDEAHrIKN~--~Sklskalr~L~a-~~R 322 (1033)
T PLN03142 248 VKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALK--RFSWRYIIIDEAHRIKNE--NSLLSKTMRLFST-NYR 322 (1033)
T ss_pred EEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhc--cCCCCEEEEcCccccCCH--HHHHHHHHHHhhc-CcE
Confidence 556665431 2357899999998865432111 125789999999998643 2334445555543 456
Q ss_pred EEEcccCCCh--HHHHHHh
Q psy6275 198 VFLSATIPNA--SQFAQWV 214 (391)
Q Consensus 198 i~~SAT~~~~--~~~~~~l 214 (391)
+++|+||-.. .++...+
T Consensus 323 LLLTGTPlqNnl~ELwsLL 341 (1033)
T PLN03142 323 LLITGTPLQNNLHELWALL 341 (1033)
T ss_pred EEEecCCCCCCHHHHHHHH
Confidence 8899998643 4444444
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.29 E-value=8.3e-11 Score=117.63 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=94.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|++.|.-..-.++.|+ +....||.|||+++.+|+......+..|-+++|+.-||.+-++.+..++. .+++
T Consensus 75 lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~ 152 (764)
T PRK12326 75 LGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGW 152 (764)
T ss_pred cCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 57789999999988888876 78999999999999988887778899999999999999999999998887 5666
Q ss_pred eeCCcccC-----CCCCEEEEcHHHHH-HHHhcC------ccccCccceEEEeccccc
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEILR-NMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l~-~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
++++.+.. -+++|+++|..-+- +++... ....+.+.+.|+||+|.+
T Consensus 153 i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 153 ITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred ECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 76665532 25899999985422 222211 123457889999999976
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.25 E-value=9.4e-11 Score=119.96 Aligned_cols=120 Identities=16% Similarity=0.173 Sum_probs=93.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-.--.+..|+ +..+.||.|||+++.+|+......|..|-+++|+.-||.+-+..+..++. .+++
T Consensus 79 lGm~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 79 MGMRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred hCCCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 46678888887765666665 88999999999999999887777899999999999999999999999987 5666
Q ss_pred eeCCcccCC-----CCCEEEEcHHHH-HHHHhcCc------cccCccceEEEeccccc
Q psy6275 130 ITGDVTINP-----SSSCLIMTTEIL-RNMLYRGS------EITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~~~-----~~~I~v~Tp~~l-~~~l~~~~------~~l~~~~~lViDE~h~~ 175 (391)
++++..... .++|+++|..-+ .+++.... ...+.+.++|+||+|.+
T Consensus 157 i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 157 VTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred ECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 766654321 489999999764 23333221 12478999999999976
No 126
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.24 E-value=6.7e-11 Score=123.76 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=58.2
Q ss_pred CCccCCCCCcHHHHHHHHH----HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH-HHHHH
Q psy6275 50 PAREYPFVLDPFQKEAILC----IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKY-REFEE 122 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~----i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~-~~~~~ 122 (391)
.+...||++++-|.+.... +.+++.+++.|+||+|||++|++|++... .+.+++|++||++|++|+. +.+..
T Consensus 238 ~~~~~~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-~~~~vvI~t~T~~Lq~Ql~~~~i~~ 314 (820)
T PRK07246 238 NIALLGLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-DQRQIIVSVPTKILQDQIMAEEVKA 314 (820)
T ss_pred hhccCCCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHHH
Confidence 3344578999999995544 45678899999999999999999988754 4689999999999999995 43433
No 127
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.21 E-value=4.2e-10 Score=105.01 Aligned_cols=151 Identities=23% Similarity=0.211 Sum_probs=93.2
Q ss_pred HHHHHHHHH-------------hcCCcEEEEecCCcchHHHHHHHHHHHHhcC-----CeEEEEcccHHHHHHHHHHHHH
Q psy6275 61 FQKEAILCI-------------ENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-----QRVIYTTPIKALSNQKYREFEE 122 (391)
Q Consensus 61 ~Q~~~i~~i-------------~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-----~~vlvl~P~~~L~~q~~~~~~~ 122 (391)
+|.+++..+ ...+.++++-.+|+|||...+..+....... ..+||++|. .+..++..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 588888755 2346789999999999998766665433222 259999999 888999999999
Q ss_pred hcc----cceeeeCCc-------ccCCCCCEEEEcHHHHHHHHh-cC--ccccCccceEEEecccccCccccchhHHHHH
Q psy6275 123 QFK----DVGLITGDV-------TINPSSSCLIMTTEILRNMLY-RG--SEITREVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 123 ~~~----~v~~~~g~~-------~~~~~~~I~v~Tp~~l~~~l~-~~--~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
+.. ++....|.. ......+++++|++.+..... .. ...--.++++|+||+|.+-+. .......+
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l 157 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKAL 157 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccc
Confidence 984 445555554 223467899999999881100 00 001125899999999998432 33333333
Q ss_pred HHhCCCCcEEEEcccCCCh--HHHHHHhc
Q psy6275 189 ILLSDNVRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 189 ~~~~~~~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
..+. ....+++|||+-.. .++...+.
T Consensus 158 ~~l~-~~~~~lLSgTP~~n~~~dl~~~l~ 185 (299)
T PF00176_consen 158 RKLR-ARYRWLLSGTPIQNSLEDLYSLLR 185 (299)
T ss_dssp HCCC-ECEEEEE-SS-SSSGSHHHHHHHH
T ss_pred cccc-cceEEeeccccccccccccccchh
Confidence 3355 56788899997653 55555443
No 128
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.21 E-value=1.6e-10 Score=116.25 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=50.4
Q ss_pred HHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 67 LCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 67 ~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
..+.+++.+++.||||+|||++|++|++..+. .+.+++|++||++|..|+.+.+..+.
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999988764 47899999999999999998877665
No 129
>KOG4150|consensus
Probab=99.18 E-value=1.3e-10 Score=111.09 Aligned_cols=274 Identities=12% Similarity=0.031 Sum_probs=178.5
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcc--------cc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFK--------DV 127 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~--------~v 127 (391)
...+|.+++..+.+|++.++.-.|.+||++++.......+ ......+++.|+++++....+-+.-... -|
T Consensus 287 ~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V 366 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYV 366 (1034)
T ss_pred hhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhccee
Confidence 6699999999999999999999999999999977765543 3456788999999998765433221111 12
Q ss_pred eeeeCCccc------CCCCCEEEEcHHHHHHHHhcC----ccccCccceEEEecccccCccccchhHHHHHHHh------
Q psy6275 128 GLITGDVTI------NPSSSCLIMTTEILRNMLYRG----SEITREVGWVIFDEIHYMRDKERGYVWEETLILL------ 191 (391)
Q Consensus 128 ~~~~g~~~~------~~~~~I~v~Tp~~l~~~l~~~----~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~------ 191 (391)
....|++.. +...+++++.|+......-.+ ..++-...+++.||+|..... ++......++.+
T Consensus 367 ~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~ 445 (1034)
T KOG4150|consen 367 EMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKG 445 (1034)
T ss_pred ecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHH
Confidence 223333322 235678999998766543322 123336678999999986432 333333333322
Q ss_pred ---CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhh
Q psy6275 192 ---SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLA 268 (391)
Q Consensus 192 ---~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 268 (391)
..+.|++-.|||+.....+..-+.. -+.+..+..++.|..-++++++.+.-- ..+
T Consensus 446 F~~~~~~~~~~~~~~~K~~~~~~~~~~~--~~E~~Li~~DGSPs~~K~~V~WNP~~~-----------P~~--------- 503 (1034)
T KOG4150|consen 446 FEASINMGVYDGDTPYKDRTRLRSELAN--LSELELVTIDGSPSSEKLFVLWNPSAP-----------PTS--------- 503 (1034)
T ss_pred HHhhcCcceEeCCCCcCCHHHHHHHhcC--CcceEEEEecCCCCccceEEEeCCCCC-----------Ccc---------
Confidence 3579999999999877434333222 345677888999999899988766310 000
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc-----------------C
Q psy6275 269 NAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL-----------------N 331 (391)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~-----------------g 331 (391)
+ ..+++..-....++..+..++. ++|.||.+|+-|+-+....+.. |
T Consensus 504 ------------~----~~~~~~i~E~s~~~~~~i~~~~-R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGG 566 (1034)
T KOG4150|consen 504 ------------K----SEKSSKVVEVSHLFAEMVQHGL-RCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGG 566 (1034)
T ss_pred ------------h----hhhhhHHHHHHHHHHHHHHcCC-cEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCc
Confidence 0 0011111112344444555554 8999999999999887665442 6
Q ss_pred CCChHHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCc
Q psy6275 332 FNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPY 382 (391)
Q Consensus 332 ~~~~~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~ 382 (391)
|.+.++|..-.+.|.+.+..+++| ++|+-||||- |.|.|.
T Consensus 567 Y~A~DRRKIE~~~F~G~L~giIaT-----------NALELGIDIG~LDAVl~~GFP~ 612 (1034)
T KOG4150|consen 567 YIAEDRRKIESDLFGGKLCGIIAT-----------NALELGIDIGHLDAVLHLGFPG 612 (1034)
T ss_pred cchhhHHHHHHHhhCCeeeEEEec-----------chhhhccccccceeEEEccCch
Confidence 666677777778888877777777 5999999995 456663
No 130
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.17 E-value=1.3e-09 Score=112.91 Aligned_cols=70 Identities=26% Similarity=0.266 Sum_probs=59.1
Q ss_pred CCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 54 YPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.++++++.|.+.+..+ .+++.+++.||||+|||++|+.|++... ..+.+++|.++|+.|.+|...+....
T Consensus 12 ~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 12 PGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcch
Confidence 4678999999998754 4566699999999999999999988865 34589999999999999999886654
No 131
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.16 E-value=2.9e-10 Score=120.98 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=56.2
Q ss_pred CCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHH
Q psy6275 54 YPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~ 119 (391)
-+|++++-|.+.+..+ .+++.+++.||||+|||++|++|++... ..+.+++|-++|+.|.+|+..+
T Consensus 254 ~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 254 PKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred CCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHh
Confidence 4689999999966544 5678899999999999999999987654 3678999999999999998763
No 132
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.13 E-value=3.7e-09 Score=101.01 Aligned_cols=68 Identities=29% Similarity=0.302 Sum_probs=56.2
Q ss_pred CCCCcHHHHHHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 55 PFVLDPFQKEAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+|.|..-|-+||..+.+ .+.-.+.|-||||||++..-.+.+. +...||++|.+.|+.|.+.+|+.++.
T Consensus 10 ~f~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~---~rPtLV~AhNKTLAaQLy~Efk~fFP 82 (663)
T COG0556 10 PFKPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKV---QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (663)
T ss_pred CCCCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHh---CCCeEEEecchhHHHHHHHHHHHhCc
Confidence 57788999999987633 2567899999999999865544443 66799999999999999999999985
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.06 E-value=2.5e-09 Score=109.21 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=86.5
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|++.|.-..-.+..| -+..+.||-|||+++.+|+.-....|..|-|++++..||.+-++.+..++. .+++
T Consensus 73 lG~r~ydvQlig~l~L~~G--~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~ 150 (870)
T CHL00122 73 LGLRHFDVQLIGGLVLNDG--KIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGL 150 (870)
T ss_pred hCCCCCchHhhhhHhhcCC--ccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceee
Confidence 4667888888776555544 589999999999999888754434688899999999999998888887776 5555
Q ss_pred eeCCcccC-----CCCCEEEEcHHHHH-HHHhcC------ccccCccceEEEeccccc
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEILR-NMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l~-~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
..++.+.. -.++|+++|..-+- +++... ....+.+.+.|+||+|.+
T Consensus 151 i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 151 IQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred eCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 55544432 25799999985322 233221 123467899999999976
No 134
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.99 E-value=8.1e-09 Score=105.23 Aligned_cols=123 Identities=10% Similarity=0.029 Sum_probs=93.5
Q ss_pred EEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--cceeeeCCccc-----------CCCCCE
Q psy6275 76 LVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--DVGLITGDVTI-----------NPSSSC 142 (391)
Q Consensus 76 li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v~~~~g~~~~-----------~~~~~I 142 (391)
+..+-+|||||.+|+-.+...+..|.++||++|..+|+.|+...|+..++ .+.++|++... ..+.+|
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 34444699999999999999999999999999999999999999999996 67888887653 345789
Q ss_pred EEEcHHHHHHHHhcCccccCccceEEEecccccC-ccccch--hHHHHH--HHhCCCCcEEEEcccCC
Q psy6275 143 LIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR-DKERGY--VWEETL--ILLSDNVRFVFLSATIP 205 (391)
Q Consensus 143 ~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~-~~~~~~--~~~~i~--~~~~~~~~~i~~SAT~~ 205 (391)
+|+|-.-++ ..++++++||+||-|.-. .....+ ....+. +.-..+..+|+.|||++
T Consensus 244 ViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 244 VVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 999986442 367899999999999532 111111 222222 22345789999999985
No 135
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=7.4e-09 Score=105.75 Aligned_cols=120 Identities=18% Similarity=0.195 Sum_probs=89.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-.--.+..|+ +..+.||-|||+++.+|+.-....|..|-|++++.-||..=++.+..+.. .+++
T Consensus 82 lG~r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~ 159 (939)
T PRK12902 82 LGMRHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGL 159 (939)
T ss_pred hCCCcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEE
Confidence 46678888887766666665 89999999999999888766556788899999999999887777777766 5666
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-----HHHHhc--CccccCccceEEEeccccc
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-----RNMLYR--GSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-----~~~l~~--~~~~l~~~~~lViDE~h~~ 175 (391)
..++.... -.++|+++|+..+ .+.+.. .....+.+.+.|+||+|.+
T Consensus 160 i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 160 IQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred ECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 65544432 2589999999654 333322 1224578899999999976
No 136
>COG4889 Predicted helicase [General function prediction only]
Probab=98.99 E-value=1.4e-09 Score=108.90 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=90.9
Q ss_pred CCCcccccccccCCCCccC-CCCCcHHHHHHHHHHhcC----CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q psy6275 36 PDLEYQPLAQSKEKPAREY-PFVLDPFQKEAILCIENN----QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~-~~~~~~~Q~~~i~~i~~~----~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~ 110 (391)
-+|+.+.- .++..++.-. +.+|+|+|+.|+....++ ...-+.+.+|+|||++.+-..-.. . ..++|+++|+.
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEal-a-~~~iL~LvPSI 216 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEAL-A-AARILFLVPSI 216 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHH-h-hhheEeecchH
Confidence 34544432 3444444433 346999999999987543 334556678999999976554333 2 38999999999
Q ss_pred HHHHHHHHHHHHhcc---cceeeeCCcccCC--------------------------------CCCEEEEcHHHHHHHHh
Q psy6275 111 ALSNQKYREFEEQFK---DVGLITGDVTINP--------------------------------SSSCLIMTTEILRNMLY 155 (391)
Q Consensus 111 ~L~~q~~~~~~~~~~---~v~~~~g~~~~~~--------------------------------~~~I~v~Tp~~l~~~l~ 155 (391)
+|..|..+.|..... ....++++..... +--|+++|++.+...-.
T Consensus 217 sLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e 296 (1518)
T COG4889 217 SLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE 296 (1518)
T ss_pred HHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH
Confidence 999999998887665 2222333222110 12388899988776544
Q ss_pred cCccccCccceEEEeccccc
Q psy6275 156 RGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 156 ~~~~~l~~~~~lViDE~h~~ 175 (391)
....-+..++++|.||||+.
T Consensus 297 AQe~G~~~fDliicDEAHRT 316 (1518)
T COG4889 297 AQEAGLDEFDLIICDEAHRT 316 (1518)
T ss_pred HHHcCCCCccEEEecchhcc
Confidence 44445678999999999985
No 137
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.96 E-value=6.5e-09 Score=107.75 Aligned_cols=149 Identities=21% Similarity=0.209 Sum_probs=97.2
Q ss_pred CcHHHHHHHHHHhc--------CCcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 58 LDPFQKEAILCIEN--------NQSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~--------~~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
-+.||-+|+..+.. |--++-.|.||||||++=.-.+...- ..+.|..|-.-.|.|.-|+-+.+++..+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 45799999987632 33477889999999998544433322 3356888888999999999998888776
Q ss_pred --cceeeeCCccc----------------------------------------------------CC------CCCEEEE
Q psy6275 126 --DVGLITGDVTI----------------------------------------------------NP------SSSCLIM 145 (391)
Q Consensus 126 --~v~~~~g~~~~----------------------------------------------------~~------~~~I~v~ 145 (391)
.+.++.|+... ++ .++++||
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 33443332110 00 1469999
Q ss_pred cHHHHHHHHh--cC-ccccC----ccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEcccCCCh
Q psy6275 146 TTEILRNMLY--RG-SEITR----EVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSATIPNA 207 (391)
Q Consensus 146 Tp~~l~~~l~--~~-~~~l~----~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 207 (391)
|++.++.... +. ...+. .=+.||+||+|.+... ....+..++... ..+.++++||||+|..
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~VlLmSATLP~~ 637 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVLLSSATLPPA 637 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEEEEeCCCCHH
Confidence 9999886652 21 11112 2358999999976432 223344444432 2468899999999876
No 138
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.94 E-value=2e-08 Score=102.62 Aligned_cols=69 Identities=26% Similarity=0.297 Sum_probs=55.0
Q ss_pred CCCCCcHHHHHHHHHHhc----C-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 54 YPFVLDPFQKEAILCIEN----N-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~----~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
..|.|+..|.++|..+.+ + +..++.|-||||||++....+ +. .+..+||++|.+.++.|++..++.++.
T Consensus 6 ~~~~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~-~~--~~~p~Lvi~~n~~~A~ql~~el~~f~p 79 (655)
T TIGR00631 6 SPFQPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVI-AQ--VNRPTLVIAHNKTLAAQLYNEFKEFFP 79 (655)
T ss_pred cCCCCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHH-HH--hCCCEEEEECCHHHHHHHHHHHHHhCC
Confidence 357899999999987633 3 366799999999999855433 32 256799999999999999999988865
No 139
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.91 E-value=1.1e-08 Score=105.86 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=54.1
Q ss_pred CCCCcHHHHHHHHHH----hc-----CCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHH
Q psy6275 55 PFVLDPFQKEAILCI----EN-----NQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i----~~-----~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~ 119 (391)
||++++-|.+-+..+ .+ ++.+++-||||+|||++|++|++.+. ..+.+|+|-+.|+.|-+|+..+
T Consensus 23 ~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 23 GFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred CCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHhh
Confidence 689999999976654 33 36789999999999999999987654 4688999999999999998643
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.90 E-value=3.3e-08 Score=100.77 Aligned_cols=121 Identities=16% Similarity=0.177 Sum_probs=83.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-.--.+..|+ +....||=|||+++.+|+.-....|..|=|+....-||..=+.++..++. .|++
T Consensus 75 lG~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~ 152 (925)
T PRK12903 75 LGKRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGI 152 (925)
T ss_pred hCCCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceee
Confidence 46678899988776666665 79999999999999888754434566677777778888766666666555 5555
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEecccccC
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~~ 176 (391)
...+.... -.++|+++|..-+ ++++... ..-.+.+.+.|+||+|.++
T Consensus 153 i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 153 NKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred eCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 55543322 2589999997543 3344322 1234678899999999763
No 141
>KOG0385|consensus
Probab=98.88 E-value=3.8e-08 Score=97.69 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=105.5
Q ss_pred CCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHH--HHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 55 PFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVA--EYAIASSLKQ-SQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~--~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
|..+++||.+.+..+ .+|-|.|+.-..|-|||+.. ++..+..... .+.-||++|...| ..|..+++++..
T Consensus 165 ~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l 243 (971)
T KOG0385|consen 165 GGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSL 243 (971)
T ss_pred CCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCc
Confidence 356999999998865 56789999999999999854 3444444333 6789999997777 556789999998
Q ss_pred cceeeeCCccc----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCC
Q psy6275 126 DVGLITGDVTI----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNV 195 (391)
Q Consensus 126 ~v~~~~g~~~~----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~ 195 (391)
++.+++|+... ....+|+|+|++..+.--.- ..--..+++||||||++-.. ...+..+++.+.. .
T Consensus 244 ~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~--lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~-~ 318 (971)
T KOG0385|consen 244 NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSF--LKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKT-D 318 (971)
T ss_pred ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHH--HhcCCceEEEechhhhhcch--hhHHHHHHHHhcc-c
Confidence 56678887652 23679999999987643111 11116789999999999765 4455567777764 3
Q ss_pred cEEEEcccCCC
Q psy6275 196 RFVFLSATIPN 206 (391)
Q Consensus 196 ~~i~~SAT~~~ 206 (391)
..+++|+|+-.
T Consensus 319 nrLLlTGTPLQ 329 (971)
T KOG0385|consen 319 NRLLLTGTPLQ 329 (971)
T ss_pred ceeEeeCCccc
Confidence 45677888643
No 142
>KOG0387|consensus
Probab=98.80 E-value=4e-07 Score=90.92 Aligned_cols=144 Identities=20% Similarity=0.219 Sum_probs=100.3
Q ss_pred CcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHH--HHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc--cce
Q psy6275 58 LDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAE--YAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK--DVG 128 (391)
Q Consensus 58 ~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~--~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v~ 128 (391)
+.++|++.+..+ ..+.-.|+--..|-|||...+ ++.+++- .-.+.+||+|| ..++.||.++|+.++. .+.
T Consensus 206 Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP-~Tii~qW~~E~~~w~p~~rv~ 284 (923)
T KOG0387|consen 206 LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCP-ATIIHQWMKEFQTWWPPFRVF 284 (923)
T ss_pred hhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEcc-HHHHHHHHHHHHHhCcceEEE
Confidence 889999999876 345567999999999998543 2223321 23478999999 6788999999999998 666
Q ss_pred eeeCCccc--------------------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH
Q psy6275 129 LITGDVTI--------------------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 129 ~~~g~~~~--------------------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
+++|.... .....|+++|++.+.- ......--..+++|+||.|.+-.. ...+...+
T Consensus 285 ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNp--ns~islac 360 (923)
T KOG0387|consen 285 ILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNP--NSKISLAC 360 (923)
T ss_pred EEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCC--ccHHHHHH
Confidence 67765441 1235699999987642 222222236899999999999765 33444455
Q ss_pred HHhCCCCcEEEEcccCCCh
Q psy6275 189 ILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 189 ~~~~~~~~~i~~SAT~~~~ 207 (391)
..++. .+.|++|+|+-..
T Consensus 361 kki~T-~~RiILSGTPiQN 378 (923)
T KOG0387|consen 361 KKIRT-VHRIILSGTPIQN 378 (923)
T ss_pred Hhccc-cceEEeeCccccc
Confidence 55654 6677889997554
No 143
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.77 E-value=5.5e-07 Score=91.42 Aligned_cols=155 Identities=15% Similarity=0.200 Sum_probs=102.4
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc--cceeeeCC-cccC-CCCCEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK--DVGLITGD-VTIN-PSSSCLIMT 146 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v~~~~g~-~~~~-~~~~I~v~T 146 (391)
..-.++.||.|+|||.+..-++...+ .++.++|++...++|+.+...+++...- -+.....+ .... ...+-+++.
T Consensus 49 ~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLivq 128 (824)
T PF02399_consen 49 RGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLIVQ 128 (824)
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEEEE
Confidence 34578999999999998777766665 4578999999999999999999986642 11111111 1112 124556666
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHH-------HHHHHhCCCCcEEEEcccCCCh-HHHHHHhcccc
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE-------ETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLH 218 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~-------~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~ 218 (391)
.+.+.+.. ...+.++|+||+||+...+.+-+.+.++ .+...+.....+|+|-|++.+. -++.+.++ .
T Consensus 129 IdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~R--p 203 (824)
T PF02399_consen 129 IDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCR--P 203 (824)
T ss_pred ehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhC--C
Confidence 66664432 2346689999999998765544433322 3334456778899999999765 44444432 3
Q ss_pred CCCeeEeeeCCCC
Q psy6275 219 HQPCHVVYTDYRP 231 (391)
Q Consensus 219 ~~~~~v~~~~~~~ 231 (391)
.++++++.+++..
T Consensus 204 ~~~i~vI~n~y~~ 216 (824)
T PF02399_consen 204 DENIHVIVNTYAS 216 (824)
T ss_pred CCcEEEEEeeeec
Confidence 5567777776554
No 144
>KOG1000|consensus
Probab=98.74 E-value=1.7e-07 Score=88.89 Aligned_cols=143 Identities=20% Similarity=0.227 Sum_probs=102.5
Q ss_pred CcHHHHHHHH-HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc---cceeeeCC
Q psy6275 58 LDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK---DVGLITGD 133 (391)
Q Consensus 58 ~~~~Q~~~i~-~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~~~g~ 133 (391)
+-|+|.+.+. ++.+|..+++.-..|-|||..++..+ .........||++|. .+-..|.+.+.+++. .+.++.+.
T Consensus 199 LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA-~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~~ 276 (689)
T KOG1000|consen 199 LLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA-RYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDKS 276 (689)
T ss_pred hCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH-HHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEecc
Confidence 7799999887 46778899999999999999864433 333456778999994 566778888888887 44445444
Q ss_pred cccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 134 VTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 134 ~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.... ....|.|.+++.+..+-..- .-..+.++|+||.|++-+. .......++..+..-.++|++|+|+.
T Consensus 277 ~D~~~~~~t~~~v~ivSye~ls~l~~~l--~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~akhvILLSGTPa 349 (689)
T KOG1000|consen 277 SDPLPDVCTSNTVAIVSYEQLSLLHDIL--KKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAKHVILLSGTPA 349 (689)
T ss_pred cCCccccccCCeEEEEEHHHHHHHHHHH--hcccceEEEEechhhhhcc-chhhhhhhhhHHHHhhheEEecCCcc
Confidence 4332 34568999999876543221 1235899999999988553 34445566666666678999999975
No 145
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.70 E-value=1.7e-07 Score=96.93 Aligned_cols=118 Identities=17% Similarity=0.162 Sum_probs=74.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cceeee
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGLIT 131 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~ 131 (391)
..|+++|--.--.+..|+ +.-+.||=|||+++.+|+.-..-.|..|=|+....-||..=.+++..++. .|+++.
T Consensus 137 m~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~ 214 (1025)
T PRK12900 137 MVPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALTGRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVIL 214 (1025)
T ss_pred ccccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHcCCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeC
Confidence 457777776655666665 88999999999999888644434455555555666676554555554444 566654
Q ss_pred CCcccC-----CCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEeccccc
Q psy6275 132 GDVTIN-----PSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 132 g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
.+.... -.++|+++|..-+ +++|..+ ..-.+.+.+.|+||+|.+
T Consensus 215 ~~~~~~~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSv 270 (1025)
T PRK12900 215 NTMRPEERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSV 270 (1025)
T ss_pred CCCCHHHHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhh
Confidence 443321 2578999997432 2233221 122357889999999975
No 146
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.69 E-value=8.3e-07 Score=91.31 Aligned_cols=70 Identities=23% Similarity=0.247 Sum_probs=55.2
Q ss_pred cCCCCCcHHHHHHHHHHhc----C-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 53 EYPFVLDPFQKEAILCIEN----N-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~----~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
..+|.|++.|..++..+.+ + +..++.|.+|+|||+.+.. +... .+..+||++|+...+.++++.+..+++
T Consensus 8 ~~~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~--~~r~vLIVt~~~~~A~~l~~dL~~~~~ 82 (652)
T PRK05298 8 VSPYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIAR--LQRPTLVLAHNKTLAAQLYSEFKEFFP 82 (652)
T ss_pred ccCCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHH--hCCCEEEEECCHHHHHHHHHHHHHhcC
Confidence 3467899999999997632 2 2577999999999987543 2222 256799999999999999999988865
No 147
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.68 E-value=1.7e-07 Score=81.85 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHHhc-C-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc
Q psy6275 58 LDPFQKEAILCIEN-N-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT 135 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~-~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~ 135 (391)
+++-|.+++..+.. + +-.++.||.|+|||.+...........+.++++++||...+..+.+....
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~------------- 68 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGI------------- 68 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-------------
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCc-------------
Confidence 68899999998853 3 35778899999999875443333334578999999999998887655321
Q ss_pred cCCCCCEEEEcHHHHHHHHhcCc----cccCccceEEEecccccCccccchhHHHHHHHhCC-CCcEEEEcc
Q psy6275 136 INPSSSCLIMTTEILRNMLYRGS----EITREVGWVIFDEIHYMRDKERGYVWEETLILLSD-NVRFVFLSA 202 (391)
Q Consensus 136 ~~~~~~I~v~Tp~~l~~~l~~~~----~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SA 202 (391)
-..|-..++....... ..+...+++|+||+-.+. ...+..++...+. +.+++++.=
T Consensus 69 -------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 69 -------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp --------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-EEEEEE-
T ss_pred -------chhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCCEEEEECC
Confidence 1122222221111100 014567899999999874 3456667776665 566666543
No 148
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.66 E-value=9.4e-08 Score=88.54 Aligned_cols=71 Identities=17% Similarity=0.317 Sum_probs=59.3
Q ss_pred CCCCCcHHHHHHHH----HHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CC-----eEEEEcccHHHHHHHHHHHHHh
Q psy6275 54 YPFVLDPFQKEAIL----CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQ-----RVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~----~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~-----~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
++|+|+|.|.+.+. .+.+++++++.||||+|||++++.|++.++.. +. +++|.++|..+..|....+++.
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 67889999999554 45678999999999999999999999876543 33 8999999999999988877765
Q ss_pred c
Q psy6275 124 F 124 (391)
Q Consensus 124 ~ 124 (391)
.
T Consensus 85 ~ 85 (289)
T smart00488 85 M 85 (289)
T ss_pred c
Confidence 3
No 149
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.66 E-value=9.4e-08 Score=88.54 Aligned_cols=71 Identities=17% Similarity=0.317 Sum_probs=59.3
Q ss_pred CCCCCcHHHHHHHH----HHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CC-----eEEEEcccHHHHHHHHHHHHHh
Q psy6275 54 YPFVLDPFQKEAIL----CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQ-----RVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~----~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~-----~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
++|+|+|.|.+.+. .+.+++++++.||||+|||++++.|++.++.. +. +++|.++|..+..|....+++.
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 67889999999554 45678999999999999999999999876543 33 8999999999999988877765
Q ss_pred c
Q psy6275 124 F 124 (391)
Q Consensus 124 ~ 124 (391)
.
T Consensus 85 ~ 85 (289)
T smart00489 85 M 85 (289)
T ss_pred c
Confidence 3
No 150
>KOG0953|consensus
Probab=98.59 E-value=1.6e-07 Score=90.33 Aligned_cols=109 Identities=24% Similarity=0.413 Sum_probs=86.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCC-----CCCEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP-----SSSCLIM 145 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~-----~~~I~v~ 145 (391)
..+-++-+|||.||||.- +++.+....+.+|.-|.|-||.+++++++...-.+.+++|...... .++.+-|
T Consensus 190 ~RkIi~H~GPTNSGKTy~----ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~~~~~~~a~hvSc 265 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYR----ALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFVLDNGNPAQHVSC 265 (700)
T ss_pred hheEEEEeCCCCCchhHH----HHHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeecCCCCCcccceEE
Confidence 345578899999999964 4566666788999999999999999999999889999999766432 3567777
Q ss_pred cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 146 Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
|-|+.. --..+++.|+||+++|.|..+|..|...+--+
T Consensus 266 TVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl 303 (700)
T KOG0953|consen 266 TVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGL 303 (700)
T ss_pred EEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhh
Confidence 776542 12368999999999999999999988655433
No 151
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.57 E-value=4.5e-07 Score=82.08 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=88.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
..|+.|++.|.-+.-.+..|+ ++...||=|||++..+++.-..-.|..|=|++.+.-|+..=++.+..++. .++
T Consensus 73 ~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~ 150 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVG 150 (266)
T ss_dssp HTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EE
T ss_pred HcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccc
Confidence 457789999999997777766 99999999999998777655555788899999999999888888887776 566
Q ss_pred eeeCCcccCC-----CCCEEEEcHHHHH-HHHhc----Ccc--ccCccceEEEecccccC-ccc
Q psy6275 129 LITGDVTINP-----SSSCLIMTTEILR-NMLYR----GSE--ITREVGWVIFDEIHYMR-DKE 179 (391)
Q Consensus 129 ~~~g~~~~~~-----~~~I~v~Tp~~l~-~~l~~----~~~--~l~~~~~lViDE~h~~~-~~~ 179 (391)
...++.+... +++|+++|...+. +++.. ... ..+.++++|+||+|.++ |..
T Consensus 151 ~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiDea 214 (266)
T PF07517_consen 151 IITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILIDEA 214 (266)
T ss_dssp EEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTTGC
T ss_pred cCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEecC
Confidence 6666654322 4789999997654 33332 111 25789999999999763 443
No 152
>KOG1803|consensus
Probab=98.54 E-value=5.1e-07 Score=88.01 Aligned_cols=67 Identities=22% Similarity=0.249 Sum_probs=59.3
Q ss_pred CCCCcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 55 PFVLDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
+..+.+.|.+|+....+. .-.++.||+|+|||.+....+.+.+.++.+|||.+||.+-++.+.+++.
T Consensus 183 ~~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 335999999999987666 4578999999999999999999999999999999999999999988755
No 153
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.50 E-value=1.3e-06 Score=91.04 Aligned_cols=130 Identities=17% Similarity=0.228 Sum_probs=81.4
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHH-----Hhcc--------cceeeeCCc---
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFE-----EQFK--------DVGLITGDV--- 134 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~-----~~~~--------~v~~~~g~~--- 134 (391)
.++.+.++||+|||.+|+-.++..... -.+.||+||+.+....+...+. ..+. ...++.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 579999999999999998888776654 3689999999988877775554 1121 111232221
Q ss_pred ----c-c--------CC-----CCCEEEEcHHHHHHHHh--c--------Cc-cccCcc----ceEEEecccccCccccc
Q psy6275 135 ----T-I--------NP-----SSSCLIMTTEILRNMLY--R--------GS-EITREV----GWVIFDEIHYMRDKERG 181 (391)
Q Consensus 135 ----~-~--------~~-----~~~I~v~Tp~~l~~~l~--~--------~~-~~l~~~----~~lViDE~h~~~~~~~~ 181 (391)
. . +. .-.|+|+|.+.+..-.. . +. ..+..+ -.||+||.|++... +
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~--~ 217 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD--N 217 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--h
Confidence 0 0 01 34789999987764211 0 00 111111 27999999998543 3
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
..++.+ ..+.+ .-++.+|||.+.
T Consensus 218 k~~~~i-~~lnp-l~~lrysAT~~~ 240 (986)
T PRK15483 218 KFYQAI-EALKP-QMIIRFGATFPD 240 (986)
T ss_pred HHHHHH-HhcCc-ccEEEEeeecCC
Confidence 456555 33433 235779999976
No 154
>KOG0390|consensus
Probab=98.46 E-value=3.3e-06 Score=86.01 Aligned_cols=145 Identities=20% Similarity=0.255 Sum_probs=98.1
Q ss_pred CCcHHHHHHHHHHh----------cCCcEEEEecCCcchHHHHHHHHHHHHhc--C-----CeEEEEcccHHHHHHHHHH
Q psy6275 57 VLDPFQKEAILCIE----------NNQSVLVSAHTSAGKTVVAEYAIASSLKQ--S-----QRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~----------~~~~~li~apTGsGKT~~~~~~~~~~l~~--~-----~~vlvl~P~~~L~~q~~~~ 119 (391)
.++|+|.+.+.-+. ...-++++=.+|+|||+..+..+-..+.+ + .+.||++| ..|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 49999999998552 12246777788999999765544444433 4 67999999 7899999999
Q ss_pred HHHhcc--ccee--eeCCccc--------------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 120 FEEQFK--DVGL--ITGDVTI--------------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 120 ~~~~~~--~v~~--~~g~~~~--------------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
|.++.. .+.. +.|.... .-...+++.+++.+......- ....++++|+||.|.+-.. .
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~i--l~~~~glLVcDEGHrlkN~--~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKI--LLIRPGLLVCDEGHRLKNS--D 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHH--hcCCCCeEEECCCCCccch--h
Confidence 999987 2222 3333331 012357788888887555432 3458999999999997543 3
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
..+...+..+.. .+.|++|+|+-+.
T Consensus 393 s~~~kaL~~l~t-~rRVLLSGTp~QN 417 (776)
T KOG0390|consen 393 SLTLKALSSLKT-PRRVLLTGTPIQN 417 (776)
T ss_pred hHHHHHHHhcCC-CceEEeeCCcccc
Confidence 344445555554 5567889997543
No 155
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.39 E-value=4.1e-06 Score=84.76 Aligned_cols=138 Identities=13% Similarity=0.136 Sum_probs=87.4
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHH--HHHHHhc---CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCC
Q psy6275 59 DPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYA--IASSLKQ---SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGD 133 (391)
Q Consensus 59 ~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~--~~~~l~~---~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~ 133 (391)
.++|+.|+..+..++..+++|++|+|||++.... .+..... ..++++.+||..-+..+.+............
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 3799999999999999999999999999975332 2222221 2589999999988888777766543322110
Q ss_pred cccCCCCCEEEEcHHHHHHHHhc------CccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 134 VTINPSSSCLIMTTEILRNMLYR------GSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 134 ~~~~~~~~I~v~Tp~~l~~~l~~------~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
........+-..|-.+++..... .....-.+++||+||+-++. ...+..++..++...++|++.=.
T Consensus 224 ~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 224 EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTKLILLGDK 295 (586)
T ss_pred hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCEEEEECCh
Confidence 00000111223444444432211 11122368999999998763 34667788888888888887544
No 156
>KOG0389|consensus
Probab=98.38 E-value=1.7e-06 Score=86.49 Aligned_cols=157 Identities=14% Similarity=0.195 Sum_probs=107.0
Q ss_pred cCCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHH--HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-
Q psy6275 53 EYPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVA--EYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK- 125 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~--~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~- 125 (391)
.-|+++.+||.-.+..+ ..+-+.|+.-..|-|||... .++.+......+.=||+||...| +.|..+|.+++.
T Consensus 395 ~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPs 473 (941)
T KOG0389|consen 395 SSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPS 473 (941)
T ss_pred CCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCc
Confidence 44677999999988865 35667899999999999854 34455555556778899998877 556789999998
Q ss_pred -cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccc--cCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 126 -DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEI--TREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 126 -~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~--l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
.|..++|.... ....+|+++|+..+..--. ...+ -.+++++|+||.|.+-+. ....+..++...
T Consensus 474 l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kd-DRsflk~~~~n~viyDEgHmLKN~-~SeRy~~LM~I~ 551 (941)
T KOG0389|consen 474 LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKD-DRSFLKNQKFNYVIYDEGHMLKNR-TSERYKHLMSIN 551 (941)
T ss_pred eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChH-HHHHHHhccccEEEecchhhhhcc-chHHHHHhcccc
Confidence 55557775442 1257899999975542110 1112 237899999999987553 355566666543
Q ss_pred CCCCcEEEEcccCCCh--HHHHHHh
Q psy6275 192 SDNVRFVFLSATIPNA--SQFAQWV 214 (391)
Q Consensus 192 ~~~~~~i~~SAT~~~~--~~~~~~l 214 (391)
....+++|+|+-.. .++...|
T Consensus 552 --An~RlLLTGTPLQNNL~ELiSLL 574 (941)
T KOG0389|consen 552 --ANFRLLLTGTPLQNNLKELISLL 574 (941)
T ss_pred --ccceEEeeCCcccccHHHHHHHH
Confidence 35678899997654 4444433
No 157
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.36 E-value=4.2e-06 Score=84.89 Aligned_cols=139 Identities=14% Similarity=0.111 Sum_probs=88.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHH--HHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCC
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAI--ASSLK--QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGD 133 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~--~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~ 133 (391)
..++|+.|+.....++-.++.|++|+|||++....+ +.... ...++++.+||..-+..+.+.+.......... ..
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-~~ 231 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-DE 231 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc-hh
Confidence 358999999988888999999999999998753332 22222 23579999999998888887776544322211 00
Q ss_pred cccCCCCCEEEEcHHHHHHHHhc------CccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 134 VTINPSSSCLIMTTEILRNMLYR------GSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 134 ~~~~~~~~I~v~Tp~~l~~~l~~------~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
.......-..|-.+++..... .....-.++++|+||+-++. ...+..++..++...++|++.=.
T Consensus 232 --~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~rlIlvGD~ 301 (615)
T PRK10875 232 --QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHARVIFLGDR 301 (615)
T ss_pred --hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCEEEEecch
Confidence 000111123344444432111 11122357999999998763 44666788888888888887544
No 158
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.35 E-value=4.3e-06 Score=86.88 Aligned_cols=127 Identities=19% Similarity=0.141 Sum_probs=83.6
Q ss_pred ccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cC--CeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 52 REYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QS--QRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 52 ~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~--~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
...++.+++-|++|+..+..++.+++.|++|+|||++.- .++..+. .+ ..+++++||...+..+.+.... .
T Consensus 318 ~~~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~---~-- 391 (720)
T TIGR01448 318 KKLRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGL---T-- 391 (720)
T ss_pred HhcCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCC---c--
Confidence 345778999999999999888899999999999998753 2233332 34 6788999998887655332110 0
Q ss_pred eeeCCcccCCCCCEEEEcHHHHHHHHhcC-----ccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 129 LITGDVTINPSSSCLIMTTEILRNMLYRG-----SEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 129 ~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~-----~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
-.|-.+++.+.... .......+++|+||++++. ...+..++..++.+.++|++.=.
T Consensus 392 ---------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~~~rlilvGD~ 452 (720)
T TIGR01448 392 ---------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAALPDHARLLLVGDT 452 (720)
T ss_pred ---------------cccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHhCCCCCEEEEECcc
Confidence 11223332211110 0112367899999999874 33556777778878888886544
No 159
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.34 E-value=1.8e-06 Score=75.05 Aligned_cols=124 Identities=22% Similarity=0.309 Sum_probs=68.9
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT 135 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~ 135 (391)
.+..|..++.++.+.+.+++.||.|+|||+.++...++.+..+ .+++|+-|..+... .++.+.|+..
T Consensus 5 ~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~-----------~lGflpG~~~ 73 (205)
T PF02562_consen 5 KNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGE-----------DLGFLPGDLE 73 (205)
T ss_dssp -SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT---------------SS-----
T ss_pred CCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcc-----------ccccCCCCHH
Confidence 6789999999999888999999999999999988888887654 48888878765422 2333333322
Q ss_pred cCC-------------------------CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH
Q psy6275 136 INP-------------------------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL 190 (391)
Q Consensus 136 ~~~-------------------------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~ 190 (391)
..- +..|-+.....+ ++.. + +-.+||+|||+.+. ...+..++.+
T Consensus 74 eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~i-----RGrt-~-~~~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFI-----RGRT-F-DNAFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp ----TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhh-----cCcc-c-cceEEEEecccCCC----HHHHHHHHcc
Confidence 110 122333333211 1111 2 23799999999764 3466677888
Q ss_pred hCCCCcEEEEccc
Q psy6275 191 LSDNVRFVFLSAT 203 (391)
Q Consensus 191 ~~~~~~~i~~SAT 203 (391)
++.+.+++++.-.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 8888888776433
No 160
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.31 E-value=3.6e-06 Score=80.51 Aligned_cols=93 Identities=16% Similarity=0.218 Sum_probs=65.9
Q ss_pred cEEEEecCCcchHHHHHHHHHHH--HhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS--LKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~--l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
.++|.|.+|||||+.++..+... ...+.+++++++..+|...+...+.... ........+..+..+.
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-----------~~~~~~~~~~~~~~~i 71 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY-----------NPKLKKSDFRKPTSFI 71 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc-----------ccchhhhhhhhhHHHH
Confidence 57899999999999887666665 5668899999999999998887776643 0111223344444444
Q ss_pred HHHhcCccccCccceEEEecccccCc
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
............++++|+||||.+.+
T Consensus 72 ~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 72 NNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhcccccccCCcCCEEEEehhHhhhh
Confidence 33332233456899999999999876
No 161
>PF13245 AAA_19: Part of AAA domain
Probab=98.30 E-value=2.9e-06 Score=61.73 Aligned_cols=56 Identities=21% Similarity=0.320 Sum_probs=43.2
Q ss_pred HHH-HHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHH
Q psy6275 65 AIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 65 ~i~-~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~ 120 (391)
++. .+..+.-+++.||+|+|||.+..-.+...+.. +.++++++|++..++++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 344 33324456679999999998776666666644 789999999999999998887
No 162
>KOG1002|consensus
Probab=98.29 E-value=8.8e-06 Score=77.50 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=98.5
Q ss_pred CCCCcHHHHHHHHHHhcC-----CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc---c
Q psy6275 55 PFVLDPFQKEAILCIENN-----QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK---D 126 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~-----~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~---~ 126 (391)
-..+-|+|.+.+..+... ...++.-..|.|||...+..++..+ .+...||++|+.+| .|+.+++....+ +
T Consensus 182 ii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~-~ra~tLVvaP~VAl-mQW~nEI~~~T~gslk 259 (791)
T KOG1002|consen 182 IIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV-DRAPTLVVAPTVAL-MQWKNEIERHTSGSLK 259 (791)
T ss_pred eecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc-ccCCeeEEccHHHH-HHHHHHHHHhccCceE
Confidence 345889999998766432 2357888999999998776666643 34569999999988 567777777766 5
Q ss_pred ceeeeCCcccC-----CCCCEEEEcHHHHHHHHhcC-------------ccccCc--cceEEEecccccCccccchhHHH
Q psy6275 127 VGLITGDVTIN-----PSSSCLIMTTEILRNMLYRG-------------SEITRE--VGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 127 v~~~~g~~~~~-----~~~~I~v~Tp~~l~~~l~~~-------------~~~l~~--~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
+-+.+|..... ...+++.+|+..+.+...+. ...+.+ +--+|+||||.+-+. .......
T Consensus 260 v~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R-~snTArA 338 (791)
T KOG1002|consen 260 VYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDR-QSNTARA 338 (791)
T ss_pred EEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccc-cccHHHH
Confidence 66677765432 25789999998877655431 112223 446999999988653 2222233
Q ss_pred HHHHhCCCCcEEEEcccCCCh
Q psy6275 187 TLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 187 i~~~~~~~~~~i~~SAT~~~~ 207 (391)
+.. +.. .....+|+|+-..
T Consensus 339 V~~-L~t-t~rw~LSGTPLQN 357 (791)
T KOG1002|consen 339 VFA-LET-TYRWCLSGTPLQN 357 (791)
T ss_pred HHh-hHh-hhhhhccCCcchh
Confidence 332 322 3456889997654
No 163
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.27 E-value=1.8e-05 Score=72.06 Aligned_cols=148 Identities=21% Similarity=0.212 Sum_probs=96.5
Q ss_pred CcHHHHHHHHHHh----------cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHhccc
Q psy6275 58 LDPFQKEAILCIE----------NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQKYREFEEQFKD 126 (391)
Q Consensus 58 ~~~~Q~~~i~~i~----------~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~~~~~~~~ 126 (391)
+...|-+++-... .+.-+++-=.||.||-....-.+++...+ ..+.|++..+..|..+..+.++.+...
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~ 117 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGAD 117 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCC
Confidence 8899999885432 23457888899999988766556555444 457999999999999999999988761
Q ss_pred -cee-----eeCCcccCCCCCEEEEcHHHHHHHHhcC---cccc--------C-ccceEEEecccccCccccc-------
Q psy6275 127 -VGL-----ITGDVTINPSSSCLIMTTEILRNMLYRG---SEIT--------R-EVGWVIFDEIHYMRDKERG------- 181 (391)
Q Consensus 127 -v~~-----~~g~~~~~~~~~I~v~Tp~~l~~~l~~~---~~~l--------~-~~~~lViDE~h~~~~~~~~------- 181 (391)
+.+ +.-+....-+..|+++|+..|...-... ...+ . .=.+||+||||.+.....+
T Consensus 118 ~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~ 197 (303)
T PF13872_consen 118 NIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKT 197 (303)
T ss_pred cccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHH
Confidence 111 1111112234569999998887654321 1111 1 2249999999998544221
Q ss_pred -hhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 182 -YVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 182 -~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
.....+...+| +.+++.+|||-..
T Consensus 198 g~avl~LQ~~LP-~ARvvY~SATgas 222 (303)
T PF13872_consen 198 GIAVLELQNRLP-NARVVYASATGAS 222 (303)
T ss_pred HHHHHHHHHhCC-CCcEEEecccccC
Confidence 22333444554 5779999999643
No 164
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.23 E-value=1.8e-05 Score=74.42 Aligned_cols=60 Identities=22% Similarity=0.246 Sum_probs=40.3
Q ss_pred CCcHHHHHHHHHH----h----cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH
Q psy6275 57 VLDPFQKEAILCI----E----NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKY 117 (391)
Q Consensus 57 ~~~~~Q~~~i~~i----~----~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~ 117 (391)
.++..+.+++... . .++++++.||||+|||..+...+...+..+..|+++ +..+|..++.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR-TADELIEILR 227 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE-EHHHHHHHHH
Confidence 3555555665522 1 458899999999999997665555566667777665 5566655553
No 165
>PRK10536 hypothetical protein; Provisional
Probab=98.22 E-value=2.2e-05 Score=70.36 Aligned_cols=136 Identities=20% Similarity=0.244 Sum_probs=80.0
Q ss_pred CCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcC-CeEEEEcccHHHHH-------HHHHHHHHh
Q psy6275 54 YPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQS-QRVIYTTPIKALSN-------QKYREFEEQ 123 (391)
Q Consensus 54 ~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~-~~vlvl~P~~~L~~-------q~~~~~~~~ 123 (391)
.++. .+..|...+..+.++..+++.||+|+|||+.+....++.+ ... .++++.-|+.+..+ ...+++..+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~ 134 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPY 134 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHH
Confidence 3445 7889999999998888999999999999999877777655 333 45666656643221 111222222
Q ss_pred cc----cceeeeCCcccC-----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCC
Q psy6275 124 FK----DVGLITGDVTIN-----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDN 194 (391)
Q Consensus 124 ~~----~v~~~~g~~~~~-----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~ 194 (391)
+. ....+.|..... ....|-|.... ++.... + +-++||+|||+.+. ...+..++..++.+
T Consensus 135 ~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~----ymRGrt--l-~~~~vIvDEaqn~~----~~~~k~~ltR~g~~ 203 (262)
T PRK10536 135 FRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFA----YMRGRT--F-ENAVVILDEAQNVT----AAQMKMFLTRLGEN 203 (262)
T ss_pred HHHHHHHHHHHhChHHHHHHHHhccCcEEEecHH----HhcCCc--c-cCCEEEEechhcCC----HHHHHHHHhhcCCC
Confidence 11 111122211111 12334444332 222221 2 34799999999874 24566777888887
Q ss_pred CcEEEE
Q psy6275 195 VRFVFL 200 (391)
Q Consensus 195 ~~~i~~ 200 (391)
.++|+.
T Consensus 204 sk~v~~ 209 (262)
T PRK10536 204 VTVIVN 209 (262)
T ss_pred CEEEEe
Confidence 777764
No 166
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.19 E-value=5e-06 Score=74.36 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHhcCCc-EEEEecCCcchHHHHHHHHHHH--------HhcCCeEEEEcccHHHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCIENNQS-VLVSAHTSAGKTVVAEYAIASS--------LKQSQRVIYTTPIKALSNQKYREFEE 122 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~-~li~apTGsGKT~~~~~~~~~~--------l~~~~~vlvl~P~~~L~~q~~~~~~~ 122 (391)
+++.|.+|+..+.+... .+|.||+|+|||.+....+... ...+.++|+++|+...++++...+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999988887 9999999999997765554444 45678999999999999999999988
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.18 E-value=1.3e-05 Score=85.65 Aligned_cols=131 Identities=17% Similarity=0.131 Sum_probs=89.8
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhccccee--eeCCcc-----c-CCCCCE
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFKDVGL--ITGDVT-----I-NPSSSC 142 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~--~~g~~~-----~-~~~~~I 142 (391)
+..+|+=-||||||++....+-..+ ...+.|++++-+++|-.|+.+.++.+...... -..+.. + .....|
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~~~i 353 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGKGKI 353 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCCCcE
Confidence 4689999999999998655543333 45789999999999999999999988762222 111111 1 124589
Q ss_pred EEEcHHHHHHHHhcCc--cccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 143 LIMTTEILRNMLYRGS--EITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 143 ~v~Tp~~l~~~l~~~~--~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
+|+|-+.+-....... ..-++==++|+||||+- .+|.....+...++ +...++||+||-..
T Consensus 354 i~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTPi~~ 416 (962)
T COG0610 354 IVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTPIFK 416 (962)
T ss_pred EEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc-cceEEEeeCCcccc
Confidence 9999999887765541 11122337999999984 34544444444454 48899999998644
No 168
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=98.17 E-value=3.2e-05 Score=80.81 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=80.0
Q ss_pred CCCCCcHHHHHHHHHHhc-CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeC
Q psy6275 54 YPFVLDPFQKEAILCIEN-NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITG 132 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~-~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g 132 (391)
.++.+++-|.+|+..+.. ++-+++.|++|+|||+..-.....+-..+.++++++||-..+..+.+. .+
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~----~g------- 417 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAE----SG------- 417 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhc----cC-------
Confidence 456799999999998876 467899999999999875433322334588999999998776655321 11
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH-hCCCCcEEEEc
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-LSDNVRFVFLS 201 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~S 201 (391)
+--.|-.++...+......+...++||+||+-++... .+..++.. ...+.++|++.
T Consensus 418 ---------~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 418 ---------IESRTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred ---------CceeeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcCCEEEEEC
Confidence 0111333332222233334568899999999987432 34445553 33567777765
No 169
>KOG0384|consensus
Probab=98.16 E-value=1.2e-05 Score=84.08 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=103.6
Q ss_pred CCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHH---HHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-c
Q psy6275 55 PFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVV---AEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-D 126 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~---~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~ 126 (391)
|.+++++|-+.+..+ ..++|+|+.-..|-|||.. |+..+.+...-.+..||++|...+.. +...|..+.. +
T Consensus 368 g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w~~mn 446 (1373)
T KOG0384|consen 368 GNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA-WEREFETWTDMN 446 (1373)
T ss_pred cchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHHhhhc
Confidence 456999999998754 5789999999999999874 45555555555678999999776654 4566766665 6
Q ss_pred ceeeeCCccc-----------CC-----CCCEEEEcHHHHHHHHhcCccccC--ccceEEEecccccCccccchhHHHHH
Q psy6275 127 VGLITGDVTI-----------NP-----SSSCLIMTTEILRNMLYRGSEITR--EVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 127 v~~~~g~~~~-----------~~-----~~~I~v~Tp~~l~~~l~~~~~~l~--~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
+.+++|+... .. +.+++++|++.++.- ...|+ ...++++||||++-.. ...+...+
T Consensus 447 ~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----k~~L~~i~w~~~~vDeahrLkN~--~~~l~~~l 520 (1373)
T KOG0384|consen 447 VIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----KAELSKIPWRYLLVDEAHRLKND--ESKLYESL 520 (1373)
T ss_pred eeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----HhhhccCCcceeeecHHhhcCch--HHHHHHHH
Confidence 6667776541 11 468999999987632 11222 5679999999998643 23333345
Q ss_pred HHhCCCCcEEEEcccCCCh--HHHHHHhc
Q psy6275 189 ILLSDNVRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 189 ~~~~~~~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
..+..+ ..+++|+|+-.. +.+...+.
T Consensus 521 ~~f~~~-~rllitgTPlQNsikEL~sLl~ 548 (1373)
T KOG0384|consen 521 NQFKMN-HRLLITGTPLQNSLKELWSLLH 548 (1373)
T ss_pred HHhccc-ceeeecCCCccccHHHHHHHhc
Confidence 555543 356778887653 55665553
No 170
>KOG4439|consensus
Probab=98.15 E-value=8.3e-06 Score=80.74 Aligned_cols=157 Identities=20% Similarity=0.198 Sum_probs=101.3
Q ss_pred CCCCcHHHHHHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHh----------cCCeEEEEcccHHHHHHHHHH
Q psy6275 55 PFVLDPFQKEAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLK----------QSQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~----------~~~~vlvl~P~~~L~~q~~~~ 119 (391)
.+.+-|+|+.++..+.- +.-.|+....|-|||+..+..+++.-. .....||++| ..|+.||..+
T Consensus 323 ~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~E 401 (901)
T KOG4439|consen 323 KVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAE 401 (901)
T ss_pred eeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHH
Confidence 34688999999987632 345789999999999976655554321 1125999999 6789999999
Q ss_pred HHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHH----HHhc--CccccC--ccceEEEecccccCccccc
Q psy6275 120 FEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRN----MLYR--GSEITR--EVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 120 ~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~----~l~~--~~~~l~--~~~~lViDE~h~~~~~~~~ 181 (391)
+.+... .|.++||...-. ...+|+|+|+..+.. -... ....+. ....||+||||.+-+. .
T Consensus 402 v~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~--~ 479 (901)
T KOG4439|consen 402 VARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS--N 479 (901)
T ss_pred HHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc--c
Confidence 988877 667788876321 257999999976654 1111 111122 4568999999988654 2
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCCh--HHHHHHhc
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
..-......+....+. ++|+|+-.. .++...+.
T Consensus 480 tq~S~AVC~L~a~~RW-clTGTPiqNn~~DvysLlr 514 (901)
T KOG4439|consen 480 TQCSKAVCKLSAKSRW-CLTGTPIQNNLWDVYSLLR 514 (901)
T ss_pred hhHHHHHHHHhhccee-ecccCccccchhHHHHHHH
Confidence 2222223334333444 667886543 55555443
No 171
>KOG1802|consensus
Probab=98.15 E-value=9.7e-06 Score=79.80 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=66.1
Q ss_pred ccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 46 SKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 46 ~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.+...+...++. ++.-|..|+.+++.+.-.++.||+|+|||.+....+.+... ..++|||.+|+...++|+++.+.+.
T Consensus 398 ~LP~~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 398 LLPRRFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred cCchhhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 344455556675 99999999999999999999999999999987666666554 4689999999999999999998876
Q ss_pred cc
Q psy6275 124 FK 125 (391)
Q Consensus 124 ~~ 125 (391)
.-
T Consensus 478 gL 479 (935)
T KOG1802|consen 478 GL 479 (935)
T ss_pred Cc
Confidence 53
No 172
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=98.09 E-value=5.3e-05 Score=80.52 Aligned_cols=127 Identities=13% Similarity=0.072 Sum_probs=83.1
Q ss_pred ccCCCCCcHHHHHHHHHHhcCC-cEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 52 REYPFVLDPFQKEAILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 52 ~~~~~~~~~~Q~~~i~~i~~~~-~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
...|+.+++-|.+|+..+..++ .+++.|+.|+|||++. -.+.... ..+.+|+.++||-..+..+.. ..
T Consensus 341 ~~~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~G~~V~~~ApTGkAA~~L~e----~t----- 410 (988)
T PRK13889 341 EARGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEAAGYEVRGAALSGIAAENLEG----GS----- 410 (988)
T ss_pred HhcCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHHcCCeEEEecCcHHHHHHHhh----cc-----
Confidence 3457889999999999888754 5789999999999873 3444433 357899999999877655532 11
Q ss_pred eeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEccc
Q psy6275 130 ITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSAT 203 (391)
Q Consensus 130 ~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 203 (391)
.+--.|-..++.........+...++|||||+-++.. ..+..++... +.+.++|++.=+
T Consensus 411 -----------Gi~a~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~~garvVLVGD~ 470 (988)
T PRK13889 411 -----------GIASRTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAADAGAKVVLVGDP 470 (988)
T ss_pred -----------CcchhhHHHHHhhhcccccccccCcEEEEECcccCCH----HHHHHHHHhhhhCCCEEEEECCH
Confidence 0111133333322222334466789999999997743 2455566543 456788877544
No 173
>PRK08181 transposase; Validated
Probab=98.04 E-value=0.00014 Score=66.52 Aligned_cols=126 Identities=16% Similarity=0.182 Sum_probs=72.5
Q ss_pred CCCccCCCC----CcHHHHHHHH----HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q psy6275 49 KPAREYPFV----LDPFQKEAIL----CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 49 ~~~~~~~~~----~~~~Q~~~i~----~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~ 120 (391)
..+..+.|. +...|..++. .+..+++++++||+|+|||..+..........+.+++++ +..+|..++....
T Consensus 75 ~tle~fd~~~~~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~-~~~~L~~~l~~a~ 153 (269)
T PRK08181 75 KTLDSFDFEAVPMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFT-RTTDLVQKLQVAR 153 (269)
T ss_pred CCHhhCCccCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeee-eHHHHHHHHHHHH
Confidence 345555542 4567776663 345788999999999999987666555555667677666 4566666653221
Q ss_pred HHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc-chhHHHHHHHhCCCCcEEE
Q psy6275 121 EEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER-GYVWEETLILLSDNVRFVF 199 (391)
Q Consensus 121 ~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~-~~~~~~i~~~~~~~~~~i~ 199 (391)
.. .+.+.++.. +...+++|+||++....... ...+-.++...-.+..+|+
T Consensus 154 ~~----------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~Ii 204 (269)
T PRK08181 154 RE----------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILI 204 (269)
T ss_pred hC----------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 10 122233222 34789999999997643211 1123334443323344555
Q ss_pred EcccC
Q psy6275 200 LSATI 204 (391)
Q Consensus 200 ~SAT~ 204 (391)
.|-..
T Consensus 205 TSN~~ 209 (269)
T PRK08181 205 TANQP 209 (269)
T ss_pred EcCCC
Confidence 44443
No 174
>PRK06526 transposase; Provisional
Probab=98.03 E-value=3.3e-05 Score=70.11 Aligned_cols=106 Identities=11% Similarity=0.089 Sum_probs=60.9
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE 148 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~ 148 (391)
+..+++++++||+|+|||..+..........+.++++. ...+++.++..... -.+..
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~-t~~~l~~~l~~~~~----------------------~~~~~ 151 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA-TAAQWVARLAAAHH----------------------AGRLQ 151 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh-hHHHHHHHHHHHHh----------------------cCcHH
Confidence 45678999999999999998766666666667777664 33445554421110 01222
Q ss_pred HHHHHHhcCccccCccceEEEecccccCcccc-chhHHHHHHHhCCCCcEEEEcccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDKER-GYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~-~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
..+. .+...+++|+||+|....... ...+..++........+|+.|...
T Consensus 152 ~~l~-------~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 152 AELV-------KLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred HHHH-------HhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 2211 134689999999997642211 122333443322234566666665
No 175
>KOG0392|consensus
Probab=97.99 E-value=5.4e-05 Score=79.33 Aligned_cols=153 Identities=16% Similarity=0.184 Sum_probs=100.6
Q ss_pred CCcHHHHHHHHHH--hc--CCcEEEEecCCcchHHHHHHH-HHHHHhc--------CCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 57 VLDPFQKEAILCI--EN--NQSVLVSAHTSAGKTVVAEYA-IASSLKQ--------SQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 57 ~~~~~Q~~~i~~i--~~--~~~~li~apTGsGKT~~~~~~-~~~~l~~--------~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
+++.||++.+..+ ++ +=+.|++-..|-|||+..+.. +..+..+ ....||++| ..|+..|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP-sTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP-STLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC-chhhhHHHHHHHHh
Confidence 4788999999865 22 347899999999999976433 3333322 234899999 67999999999999
Q ss_pred cc--cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCC
Q psy6275 124 FK--DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDN 194 (391)
Q Consensus 124 ~~--~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~ 194 (391)
+. ++....|....+ .+++|+|++++.+.+-...-. -.++.++|+||-|-+-.. ...+....+.+..+
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~l~--~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a~ 1129 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDYLI--KIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRAN 1129 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHHHH--hcccceEEecCcceecch--HHHHHHHHHHHhhc
Confidence 98 444455544322 246899999998764322111 126789999999988543 33344455555543
Q ss_pred CcEEEEcccCCCh--HHHHHHhc
Q psy6275 195 VRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 195 ~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
. .+.+|+|+-.. .++...+.
T Consensus 1130 h-RLILSGTPIQNnvleLWSLFd 1151 (1549)
T KOG0392|consen 1130 H-RLILSGTPIQNNVLELWSLFD 1151 (1549)
T ss_pred c-eEEeeCCCcccCHHHHHHHHH
Confidence 3 45678887543 44444333
No 176
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.96 E-value=2.8e-05 Score=62.99 Aligned_cols=117 Identities=20% Similarity=0.163 Sum_probs=56.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEE-cccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYT-TPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLI 144 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl-~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v 144 (391)
+++.+++.||+|+|||......+...... ...++++ +|...-...+...+...++... .. -
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~----------~ 69 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPL---KS----------R 69 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SS---SS----------T
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccc---cc----------c
Confidence 45678999999999999865554443321 3444444 4443323444444444332110 00 1
Q ss_pred EcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 145 MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 145 ~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
.+...+.+.+....... ...++|+||+|.+. ....++.+........--+++++++
T Consensus 70 ~~~~~l~~~~~~~l~~~-~~~~lviDe~~~l~---~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 70 QTSDELRSLLIDALDRR-RVVLLVIDEADHLF---SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp S-HHHHHHHHHHHHHHC-TEEEEEEETTHHHH---THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred CCHHHHHHHHHHHHHhc-CCeEEEEeChHhcC---CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 23444444333221111 22799999999973 1445555555444333344455554
No 177
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=2.6e-05 Score=81.44 Aligned_cols=71 Identities=15% Similarity=0.313 Sum_probs=61.4
Q ss_pred cCCCC-CcHHHHHHHHH----HhcCCcEEEEecCCcchHHHHHHHHHHHHh-cC--CeEEEEcccHHHHHHHHHHHHHh
Q psy6275 53 EYPFV-LDPFQKEAILC----IENNQSVLVSAHTSAGKTVVAEYAIASSLK-QS--QRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 53 ~~~~~-~~~~Q~~~i~~----i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~--~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.++|+ ++|.|.+.+.. +.++++.++.+|||+|||++.+.+++.+.. .+ .+++|.+.|..-..|+.+++++.
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 35777 59999998875 467899999999999999999999998875 33 69999999999999999999884
No 178
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.94 E-value=0.00011 Score=64.66 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=80.1
Q ss_pred cCCCCCcHHHHHHHHHHhc---CCcEEEEecCCcchHHHHHHHHHH-HHhcCCe-EEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 53 EYPFVLDPFQKEAILCIEN---NQSVLVSAHTSAGKTVVAEYAIAS-SLKQSQR-VIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~---~~~~li~apTGsGKT~~~~~~~~~-~l~~~~~-vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
+.++-+++.|.+....+.+ ++|.+...-+|.|||.+ +.|++. .+.++.+ +.+++| ++|..|....+...++
T Consensus 19 e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg~l 96 (229)
T PF12340_consen 19 ESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLGGL 96 (229)
T ss_pred HcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHHHH
Confidence 3455699999999988754 57999999999999988 445444 4445544 445555 7899999999888776
Q ss_pred ---cceeeeC--Cccc---------------CCCCCEEEEcHHHHHHHHhcC------------------ccccCccceE
Q psy6275 126 ---DVGLITG--DVTI---------------NPSSSCLIMTTEILRNMLYRG------------------SEITREVGWV 167 (391)
Q Consensus 126 ---~v~~~~g--~~~~---------------~~~~~I~v~Tp~~l~~~l~~~------------------~~~l~~~~~l 167 (391)
.+-.+.- +... .....|+++||+.++++.-.. ...+.....=
T Consensus 97 ~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rd 176 (229)
T PF12340_consen 97 LNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRD 176 (229)
T ss_pred hCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCe
Confidence 1111111 1111 124569999999877653211 1123344457
Q ss_pred EEecccccCc
Q psy6275 168 IFDEIHYMRD 177 (391)
Q Consensus 168 ViDE~h~~~~ 177 (391)
|+||+|..+.
T Consensus 177 ilDEsDe~L~ 186 (229)
T PF12340_consen 177 ILDESDEILS 186 (229)
T ss_pred EeECchhccC
Confidence 8899887654
No 179
>PRK06921 hypothetical protein; Provisional
Probab=97.94 E-value=4.6e-05 Score=69.69 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=31.0
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQK 116 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~ 116 (391)
.+.++++.|++|+|||..+...+...+.. +..++++ +..++..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~-~~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYF-PFVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEE-EHHHHHHHH
Confidence 36789999999999998765544444555 6667666 445555554
No 180
>PRK04296 thymidine kinase; Provisional
Probab=97.90 E-value=2.4e-05 Score=67.93 Aligned_cols=86 Identities=9% Similarity=0.173 Sum_probs=52.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc---HHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI---KALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~---~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~ 148 (391)
|.-.++.||+|+|||+.++-.+.+....+.+++++-|. +....++ ....+ ... ..+.+..+.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i-------~~~lg-----~~~---~~~~~~~~~ 66 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKV-------VSRIG-----LSR---EAIPVSSDT 66 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcE-------ecCCC-----Ccc---cceEeCChH
Confidence 34568999999999988877777776778889888662 2211111 11111 010 112334555
Q ss_pred HHHHHHhcCccccCccceEEEeccccc
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
.++..+.. .-.++++||+||+|.+
T Consensus 67 ~~~~~~~~---~~~~~dvviIDEaq~l 90 (190)
T PRK04296 67 DIFELIEE---EGEKIDCVLIDEAQFL 90 (190)
T ss_pred HHHHHHHh---hCCCCCEEEEEccccC
Confidence 55555544 2347899999999876
No 181
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.88 E-value=0.0011 Score=64.28 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=72.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccc-------------cee------------------------eeCCcc-------
Q psy6275 100 SQRVIYTTPIKALSNQKYREFEEQFKD-------------VGL------------------------ITGDVT------- 135 (391)
Q Consensus 100 ~~~vlvl~P~~~L~~q~~~~~~~~~~~-------------v~~------------------------~~g~~~------- 135 (391)
.++||||+|+|..|-++.+.+.++... .+. ..|+..
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 479999999999999999888877652 110 111111
Q ss_pred -c----------CCCCCEEEEcHHHHHHHHhc------CccccCccceEEEecccccCccccchhHHHHHHHh---C---
Q psy6275 136 -I----------NPSSSCLIMTTEILRNMLYR------GSEITREVGWVIFDEIHYMRDKERGYVWEETLILL---S--- 192 (391)
Q Consensus 136 -~----------~~~~~I~v~Tp~~l~~~l~~------~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~---~--- 192 (391)
. -.++||+||+|=-|...+.. ...+|+++.++|+|.||.++-+.+... ..++..+ |
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv-~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHV-LHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHH-HHHHHHhccCCCCC
Confidence 0 01368999999777666653 346889999999999998876544433 3344433 1
Q ss_pred ------------------CCCcEEEEcccCCCh
Q psy6275 193 ------------------DNVRFVFLSATIPNA 207 (391)
Q Consensus 193 ------------------~~~~~i~~SAT~~~~ 207 (391)
.-+|+|++|+.....
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe 228 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPE 228 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHH
Confidence 238999999998655
No 182
>KOG0921|consensus
Probab=97.85 E-value=7.5e-05 Score=76.01 Aligned_cols=147 Identities=23% Similarity=0.317 Sum_probs=96.6
Q ss_pred HHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-----CeEEEEcccHHHHHHHHHHHHHhcc-cceeeeC-----
Q psy6275 64 EAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-----QRVIYTTPIKALSNQKYREFEEQFK-DVGLITG----- 132 (391)
Q Consensus 64 ~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-----~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g----- 132 (391)
..+.++..++.+++.+.||+|||..+...+++.+..+ .-+.+..|++-.+..+.+++..--. .++-..|
T Consensus 385 ~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf 464 (1282)
T KOG0921|consen 385 EILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRF 464 (1282)
T ss_pred HHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccc
Confidence 3344556778899999999999999988888877543 3466777888666666655544322 1211111
Q ss_pred -CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh---CCCCcEEEEcccCCChH
Q psy6275 133 -DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL---SDNVRFVFLSATIPNAS 208 (391)
Q Consensus 133 -~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~ 208 (391)
......-..|+.+|-+-+++.+... +..+.++|+||.|+..-. +..+..+++.+ .....+++||||+ +..
T Consensus 465 ~Sa~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v~lmsatI-dTd 538 (1282)
T KOG0921|consen 465 DSATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRVVLMSATI-DTD 538 (1282)
T ss_pred cccccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccc--hHHHHHHHHhhhccchhhhhhhhhccc-chh
Confidence 1111234568999999998887765 447889999999975322 33344444433 3568889999999 555
Q ss_pred HHHHHhcc
Q psy6275 209 QFAQWVSH 216 (391)
Q Consensus 209 ~~~~~l~~ 216 (391)
.|..+++.
T Consensus 539 ~f~~~f~~ 546 (1282)
T KOG0921|consen 539 LFTNFFSS 546 (1282)
T ss_pred hhhhhhcc
Confidence 56666653
No 183
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.85 E-value=0.00031 Score=75.29 Aligned_cols=126 Identities=15% Similarity=0.053 Sum_probs=83.0
Q ss_pred CCCCCcHHHHHHHHHHh-cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeC
Q psy6275 54 YPFVLDPFQKEAILCIE-NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITG 132 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~-~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g 132 (391)
.++.+++-|.+++..+. .++-.++.|+.|+|||++.-...-.+-..+.+|+.++||-.-+..+.+. .+
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~----~G------- 446 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKE----AG------- 446 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHh----hC-------
Confidence 36789999999999875 4567899999999999875443333334688999999998777665322 11
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC-CCCcEEEEccc
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS-DNVRFVFLSAT 203 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT 203 (391)
|--.|-..++.........+..-++|||||+.++. ...+..++.... .+.++|++.=+
T Consensus 447 ---------i~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 447 ---------IQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred ---------CCeeeHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcCCEEEEECCH
Confidence 11123333321112233446677899999999764 335556666654 56788877544
No 184
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.80 E-value=7.6e-05 Score=76.59 Aligned_cols=67 Identities=22% Similarity=0.212 Sum_probs=59.2
Q ss_pred CCcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 57 VLDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.+++.|.+|+..+... ...++.||+|+|||.+....+.+.+..+.+||+++||...++++.+.+...
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 4899999999987765 678999999999999887777777788889999999999999999998874
No 185
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.80 E-value=0.00024 Score=58.02 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
++.+++.||+|+|||......+......+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 67899999999999986555544443445566666543
No 186
>KOG1132|consensus
Probab=97.77 E-value=0.00016 Score=73.83 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=55.1
Q ss_pred cCCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHHh--------------c---------------
Q psy6275 53 EYPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSLK--------------Q--------------- 99 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l~--------------~--------------- 99 (391)
+++|+|++.|...+..+ ....+.++.+|||+|||++.+-..+.+.. .
T Consensus 17 ~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 17 EFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred eccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 46788999999877654 56788999999999999987665555542 0
Q ss_pred -------------CCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 100 -------------SQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 100 -------------~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
-+++.|-.-|..-..|+.+++++..
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 1367777778888899998888764
No 187
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.00023 Score=64.60 Aligned_cols=99 Identities=23% Similarity=0.242 Sum_probs=67.6
Q ss_pred CCCccCCCC-CcHHHHHHHHHH-------hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q psy6275 49 KPAREYPFV-LDPFQKEAILCI-------ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 49 ~~~~~~~~~-~~~~Q~~~i~~i-------~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~ 120 (391)
+.+..+.|. ....+.+++..+ .+++++++.||+|+|||..+.......+..+.+| .++++.+|+.++...+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv-~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISV-LFITAPDLLSKLKAAF 152 (254)
T ss_pred CCcccccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeE-EEEEHHHHHHHHHHHH
Confidence 566667776 666677766543 3578999999999999998766666666444555 5558889988887655
Q ss_pred HHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC
Q psy6275 121 EEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 121 ~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
..-. ..+.+... +.+++++|+||+-...
T Consensus 153 ~~~~---------------------~~~~l~~~-------l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 153 DEGR---------------------LEEKLLRE-------LKKVDLLIIDDIGYEP 180 (254)
T ss_pred hcCc---------------------hHHHHHHH-------hhcCCEEEEecccCcc
Confidence 4300 12333332 4489999999998753
No 188
>KOG0391|consensus
Probab=97.75 E-value=0.0001 Score=76.94 Aligned_cols=145 Identities=16% Similarity=0.163 Sum_probs=96.3
Q ss_pred CCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHhcc--cc
Q psy6275 57 VLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKALSNQKYREFEEQFK--DV 127 (391)
Q Consensus 57 ~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L~~q~~~~~~~~~~--~v 127 (391)
.++.||+..+..+ .++-|.|+.-..|-|||..-+..+.+.... =+-=||+|||-.+.+ |.-+|++++. ++
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcPglKI 693 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCPGLKI 693 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCCcceE
Confidence 3788999999865 346689999999999998643322222111 245678889877654 5668888888 44
Q ss_pred eeeeCCcccC----------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcE
Q psy6275 128 GLITGDVTIN----------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRF 197 (391)
Q Consensus 128 ~~~~g~~~~~----------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~ 197 (391)
-.+.|..... ...+|.|+++..++.-+..-. -+.+.++|+||||.+-.+ ..-.|+.++.... .+.
T Consensus 694 LTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFk--rkrWqyLvLDEaqnIKnf-ksqrWQAllnfns--qrR 768 (1958)
T KOG0391|consen 694 LTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFK--RKRWQYLVLDEAQNIKNF-KSQRWQALLNFNS--QRR 768 (1958)
T ss_pred eeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHH--hhccceeehhhhhhhcch-hHHHHHHHhccch--hhe
Confidence 4455644321 124788999987775443211 237889999999998654 3445776665443 567
Q ss_pred EEEcccCCCh
Q psy6275 198 VFLSATIPNA 207 (391)
Q Consensus 198 i~~SAT~~~~ 207 (391)
++++.|+-..
T Consensus 769 LLLtgTPLqN 778 (1958)
T KOG0391|consen 769 LLLTGTPLQN 778 (1958)
T ss_pred eeecCCchhh
Confidence 8889997554
No 189
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.70 E-value=0.0013 Score=59.30 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHh-------c-CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceee
Q psy6275 59 DPFQKEAILCIE-------N-NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLI 130 (391)
Q Consensus 59 ~~~Q~~~i~~i~-------~-~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~ 130 (391)
++-|..++..+. . ...+++.|++|+|||..+...+......+..++++ +..++...+...+..
T Consensus 78 ~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t~~~l~~~l~~~~~~-------- 148 (244)
T PRK07952 78 CEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-TVADIMSAMKDTFSN-------- 148 (244)
T ss_pred CchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-EHHHHHHHHHHHHhh--------
Confidence 455666665432 1 14799999999999988665555555566677666 445554444332210
Q ss_pred eCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccch-hHHHHHHHh-CCCCcEEEEcccCCChH
Q psy6275 131 TGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGY-VWEETLILL-SDNVRFVFLSATIPNAS 208 (391)
Q Consensus 131 ~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~-~~~~i~~~~-~~~~~~i~~SAT~~~~~ 208 (391)
. + .+.+.+++. +..+++|||||++......+.. .+..++... .....+++.| .+ +..
T Consensus 149 -~--------~---~~~~~~l~~-------l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitS-Nl-~~~ 207 (244)
T PRK07952 149 -S--------E---TSEEQLLND-------LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLT-NS-NME 207 (244)
T ss_pred -c--------c---ccHHHHHHH-------hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeC-CC-CHH
Confidence 0 0 123333332 4478999999999865332222 233344432 3345555544 44 233
Q ss_pred HHHHHh
Q psy6275 209 QFAQWV 214 (391)
Q Consensus 209 ~~~~~l 214 (391)
++.+.+
T Consensus 208 ~l~~~~ 213 (244)
T PRK07952 208 EMTKLL 213 (244)
T ss_pred HHHHHh
Confidence 344443
No 190
>PRK12377 putative replication protein; Provisional
Probab=97.70 E-value=0.00084 Score=60.60 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=47.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
..++++.||+|+|||..+...+......+..++++ +..+|..++...+.. +. +...++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i-~~~~l~~~l~~~~~~---------~~------------~~~~~l 158 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV-TVPDVMSRLHESYDN---------GQ------------SGEKFL 158 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE-EHHHHHHHHHHHHhc---------cc------------hHHHHH
Confidence 36799999999999987655555555555555444 556777766443321 00 111222
Q ss_pred HHHhcCccccCccceEEEeccccc
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+ .+.++++||+||++..
T Consensus 159 ~-------~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 159 Q-------ELCKVDLLVLDEIGIQ 175 (248)
T ss_pred H-------HhcCCCEEEEcCCCCC
Confidence 2 2458999999999754
No 191
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.68 E-value=0.00011 Score=68.85 Aligned_cols=114 Identities=20% Similarity=0.179 Sum_probs=73.7
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcccceeeeC-
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFKDVGLITG- 132 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g- 132 (391)
+++-|.+++.. ..++++|.|+.|||||.+.+.-+...+.. +.++|++++|+..+.++..++...+........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~~~ 78 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQESSD 78 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCCTT
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccccc
Confidence 47889999987 67789999999999999887666666544 368999999999999999999887642211000
Q ss_pred Cc----ccCCCCCEEEEcHHHHHHHHhcC-cccc-CccceEEEeccc
Q psy6275 133 DV----TINPSSSCLIMTTEILRNMLYRG-SEIT-REVGWVIFDEIH 173 (391)
Q Consensus 133 ~~----~~~~~~~I~v~Tp~~l~~~l~~~-~~~l-~~~~~lViDE~h 173 (391)
+. .......+.|+|-..+...+-+. .... -.-.+-++|+..
T Consensus 79 ~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 79 NERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp -HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 00113468888987766543322 1111 133566777776
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.67 E-value=0.00013 Score=59.15 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=28.7
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
++.+++.||+|+|||......+.........++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccc
Confidence 567999999999999986555444322233577777765443
No 193
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.66 E-value=0.00012 Score=62.86 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=32.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~ 116 (391)
.+++++++.||+|+|||..+...+.+.+..+..++++ +..+|..++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEe-ecCceeccc
Confidence 5678999999999999998776666677777777665 566776665
No 194
>KOG0386|consensus
Probab=97.64 E-value=7.3e-05 Score=76.98 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=93.6
Q ss_pred CCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHH---HHHhcCCeEEEEcccHHHHHHHHHHHHHhcccc
Q psy6275 55 PFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIA---SSLKQSQRVIYTTPIKALSNQKYREFEEQFKDV 127 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~---~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v 127 (391)
|-++.+||...+..+ .++-|.++.-.+|-|||..-+..+. ......+.-||+||+-.|.+- ..+|..+...+
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW-~~Ef~kWaPSv 470 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNW-SSEFPKWAPSV 470 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCc-hhhccccccce
Confidence 347999999999876 3445789999999999986533332 233446778999999999775 46777777655
Q ss_pred ee--eeCCccc---------CCCCCEEEEcHHHHHHHHhcCccccC--ccceEEEecccccCccccchhHHHHHHHhCCC
Q psy6275 128 GL--ITGDVTI---------NPSSSCLIMTTEILRNMLYRGSEITR--EVGWVIFDEIHYMRDKERGYVWEETLILLSDN 194 (391)
Q Consensus 128 ~~--~~g~~~~---------~~~~~I~v~Tp~~l~~~l~~~~~~l~--~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~ 194 (391)
.. ..|.... ..+.+|+++|++.+.. .+..|+ +..++||||-|+|... ...+...+.-.-..
T Consensus 471 ~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y~~ 544 (1157)
T KOG0386|consen 471 QKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHYRA 544 (1157)
T ss_pred eeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccccccch--hhHHHHHhhccccc
Confidence 43 3333221 2367899999987653 333344 4568999999998653 22222222212223
Q ss_pred CcEEEEcccCCC
Q psy6275 195 VRFVFLSATIPN 206 (391)
Q Consensus 195 ~~~i~~SAT~~~ 206 (391)
...+++|+|+..
T Consensus 545 q~RLLLTGTPLQ 556 (1157)
T KOG0386|consen 545 QRRLLLTGTPLQ 556 (1157)
T ss_pred hhhhhhcCChhh
Confidence 456777888643
No 195
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.61 E-value=0.0017 Score=62.38 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=68.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH----hcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL----KQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIM 145 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l----~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~ 145 (391)
++.++++||||+|||++..-.+.... ..+.+|.++. +.|.-+.++...+.+..+ +.+ ..+-
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lg-vpv------------~~~~ 240 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMG-IPV------------KAIE 240 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCC-cce------------EeeC
Confidence 35689999999999998754433322 1345555554 445555544444444331 111 1222
Q ss_pred cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHH---HHHhCCC-CcEEEEcccCCChHHHHHHhc
Q psy6275 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET---LILLSDN-VRFVFLSATIPNASQFAQWVS 215 (391)
Q Consensus 146 Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i---~~~~~~~-~~~i~~SAT~~~~~~~~~~l~ 215 (391)
+++.+...+.. +.+.+++++|++.+.... ...+..+ +...... -.++.+|||.. ..++.+.+.
T Consensus 241 ~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~--~~~l~el~~~l~~~~~~~e~~LVlsat~~-~~~~~~~~~ 307 (388)
T PRK12723 241 SFKDLKEEITQ----SKDFDLVLVDTIGKSPKD--FMKLAEMKELLNACGRDAEFHLAVSSTTK-TSDVKEIFH 307 (388)
T ss_pred cHHHHHHHHHH----hCCCCEEEEcCCCCCccC--HHHHHHHHHHHHhcCCCCeEEEEEcCCCC-HHHHHHHHH
Confidence 45555554433 357999999999987422 1123333 3333322 35678999985 444444443
No 196
>PRK08727 hypothetical protein; Validated
Probab=97.55 E-value=0.0019 Score=58.04 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=26.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
..+++.||+|+|||.............+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 35899999999999876655555555677777763
No 197
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.51 E-value=0.0013 Score=59.08 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=26.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+.+++++||+|+|||.............+.+++|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH
Confidence 3679999999999998765544444445667777643
No 198
>PRK05642 DNA replication initiation factor; Validated
Probab=97.50 E-value=0.00073 Score=60.73 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=53.2
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
..++++||+|+|||........+....+.+++|+.. .++.... ..+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~~~~~~-------------------------------~~~~~ 93 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AELLDRG-------------------------------PELLD 93 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HHHHhhh-------------------------------HHHHH
Confidence 468899999999998754443333345667777643 4433210 11111
Q ss_pred HHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.+.+.+++|+|++|.+... .....+-.++..+......+++|++.+
T Consensus 94 -------~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 94 -------NLEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred -------hhhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 1336789999999977432 222334445544443334556666643
No 199
>KOG1805|consensus
Probab=97.49 E-value=0.00042 Score=71.44 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=79.3
Q ss_pred CCcHHHHHHHHHHhcCC-cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeee----
Q psy6275 57 VLDPFQKEAILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT---- 131 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~-~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~---- 131 (391)
.++.-|++|+..++..+ ..+|.|=+|+|||.+....+--.+..+.+||..+-|...++.+.-++....-.+.-+.
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 38899999998776554 5789999999999987666655666799999999999999999888876653211111
Q ss_pred -----------CCccc---------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 132 -----------GDVTI---------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 132 -----------g~~~~---------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
.+... -.++.|+.+|---+..-+. ..+.+|++|+|||-.++.
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----VNRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----hccccCEEEEcccccccc
Confidence 11110 1235566666422211111 234799999999997743
No 200
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.48 E-value=0.0017 Score=56.56 Aligned_cols=122 Identities=15% Similarity=0.112 Sum_probs=67.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
-++++||||+|||++..-.+.+...++.++.+++ ..|.-+.++.+.+.+..+ +.+...... ..|..+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~---------~~~~~~~ 72 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG-VPFYVARTE---------SDPAEIA 72 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT-EEEEESSTT---------SCHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc-cccchhhcc---------hhhHHHH
Confidence 4789999999999987554444444466666654 346666666666666553 211111000 0133222
Q ss_pred -HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 152 -NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 152 -~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
+.+... .-++++++++|-+.+.... ..-..+..++....+..-.+.+|||....
T Consensus 73 ~~~l~~~--~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 73 REALEKF--RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE 128 (196)
T ss_dssp HHHHHHH--HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH
T ss_pred HHHHHHH--hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH
Confidence 233221 1236899999999865321 12233445555665556678899998654
No 201
>PRK08116 hypothetical protein; Validated
Probab=97.47 E-value=0.0012 Score=60.56 Aligned_cols=45 Identities=20% Similarity=0.262 Sum_probs=30.3
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~ 119 (391)
.+++.|++|+|||..+...+-..+..+..++++ +..++..++...
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHH
Confidence 499999999999988665544444555566555 556666555433
No 202
>KOG2340|consensus
Probab=97.46 E-value=0.00051 Score=66.38 Aligned_cols=125 Identities=16% Similarity=0.181 Sum_probs=84.7
Q ss_pred CCcHHHHHHHHHHhcCCcEEEE-ecCCcch--HHHHHHHHHHHHh-------------------------------cCCe
Q psy6275 57 VLDPFQKEAILCIENNQSVLVS-AHTSAGK--TVVAEYAIASSLK-------------------------------QSQR 102 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~-apTGsGK--T~~~~~~~~~~l~-------------------------------~~~~ 102 (391)
.+|+.|.+.+..+.+-++++.. ..-+.|+ +-.|++-+++++- ..++
T Consensus 216 pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpk 295 (698)
T KOG2340|consen 216 PLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPK 295 (698)
T ss_pred cchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCce
Confidence 5999999999999888887532 2223444 4456666666551 1368
Q ss_pred EEEEcccHHHHHHHHHHHHHhcc-----c--c-------eeeeCCccc--------------------------------
Q psy6275 103 VIYTTPIKALSNQKYREFEEQFK-----D--V-------GLITGDVTI-------------------------------- 136 (391)
Q Consensus 103 vlvl~P~~~L~~q~~~~~~~~~~-----~--v-------~~~~g~~~~-------------------------------- 136 (391)
|||++|+|+-|-.+...+..++. + | +-..|+...
T Consensus 296 VLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkK 375 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKK 375 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHH
Confidence 99999999999999999988843 0 0 112221110
Q ss_pred -------CCCCCEEEEcHHHHHHHHhc------CccccCccceEEEecccccCccccc
Q psy6275 137 -------NPSSSCLIMTTEILRNMLYR------GSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 137 -------~~~~~I~v~Tp~~l~~~l~~------~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
-.+.+|+||+|=-|...+.+ ...+++.+.++|+|-+|.++...+.
T Consensus 376 tikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE 433 (698)
T KOG2340|consen 376 TIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE 433 (698)
T ss_pred HHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH
Confidence 01368999999766655552 2357889999999999998765433
No 203
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.45 E-value=0.0022 Score=57.32 Aligned_cols=36 Identities=8% Similarity=0.173 Sum_probs=26.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
++.+++.||+|+|||..+.....+....+..++++.
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 467999999999999876555555445566666664
No 204
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.0044 Score=59.14 Aligned_cols=116 Identities=15% Similarity=0.132 Sum_probs=66.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHH-HHHHHHHHHHHhcccceeeeCCcccCCCCCEE-EEcHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKA-LSNQKYREFEEQFKDVGLITGDVTINPSSSCL-IMTTE 148 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~-L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~-v~Tp~ 148 (391)
+.+.++||||+|||+.....+......+.++.++. |.|. .+.|+. .+.+.. +..++ +.+|.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk-~yae~l--------------gipv~v~~d~~ 306 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQ-DYVKTI--------------GFEVIAVRDEA 306 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHhhhc--------------CCcEEecCCHH
Confidence 56889999999999987555555555666776664 3342 333432 222221 12233 34677
Q ss_pred HHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh---CCCCcEEEEcccCCC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL---SDNVRFVFLSATIPN 206 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~ 206 (391)
.+...+..... -.+++++++|-+-+.... ...+..+...+ .+..-++.+|||...
T Consensus 307 ~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd--~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 307 AMTRALTYFKE-EARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred HHHHHHHHHHh-ccCCCEEEEeCccccCcC--HHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 76655543211 125899999999875422 23344444333 333345668998643
No 205
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.40 E-value=0.0018 Score=63.85 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=81.1
Q ss_pred eeeeeecccCccccceeEEeeehhchhceeccCCCCCcccccccccCCCCccCCC-----CCcHHHHHHHHHHhc-----
Q psy6275 2 IYYCLFCRESKTKACMKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPF-----VLDPFQKEAILCIEN----- 71 (391)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~Q~~~i~~i~~----- 71 (391)
.|.|..||.....-...=.....|....++.. ... .. ...-...+.+... -+|.+ .-++.++.
T Consensus 7 ~y~C~~Cg~~~~~~~g~Cp~C~~w~t~~e~~~-~~~-~~---~~~~~~~~~~~~~~~~~ri~TGi--~~LD~~LgGGi~~ 79 (446)
T PRK11823 7 AYVCQECGAESPKWLGRCPECGAWNTLVEEVA-ASK-AG---SSKPVQPLSDIEAEEEPRISTGI--GELDRVLGGGLVP 79 (446)
T ss_pred eEECCcCCCCCcccCeeCcCCCCccceeeecc-ccc-cc---CCCCceehhhcccccCCcccCCc--HHHHHHhcCCccC
Confidence 49999999766554444444444666555431 100 00 0000000111110 12222 23444443
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEc---HH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMT---TE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~T---p~ 148 (391)
|.-+++.|++|+|||+..+..+......+.+++|+.- .+-..|+..+..++..... ++.+.. -+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~------------~l~~~~e~~l~ 146 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG-EESASQIKLRAERLGLPSD------------NLYLLAETNLE 146 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc-cccHHHHHHHHHHcCCChh------------cEEEeCCCCHH
Confidence 4568999999999999876666655556789999874 4445566555554432110 122322 23
Q ss_pred HHHHHHhcCccccCccceEEEecccccCc
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
.+...+.+ .+.+++|+|+++.+..
T Consensus 147 ~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 147 AILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHHHHHh-----hCCCEEEEechhhhcc
Confidence 44444422 2678999999997743
No 206
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.39 E-value=0.0047 Score=60.42 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=63.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++.+++.||||+|||++....+.... ..+.+|.++. |.+.-+.+....+.+..+ + +-..+.++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~-v------------p~~~~~~~ 287 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMG-I------------PVEVVYDP 287 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhC-C------------ceEccCCH
Confidence 46789999999999987654443332 3455666664 334333333333333221 1 01123355
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHh-CCCCcEEEEcccCCC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILL-SDNVRFVFLSATIPN 206 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~-~~~~~~i~~SAT~~~ 206 (391)
+.+...+.. +...++|+||.+-..... .....+..++... ......+.+|||...
T Consensus 288 ~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 288 KELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred HhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 555555543 346899999999764321 1112233333311 122447778998743
No 207
>PRK06893 DNA replication initiation factor; Validated
Probab=97.35 E-value=0.0011 Score=59.36 Aligned_cols=94 Identities=13% Similarity=0.118 Sum_probs=53.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
..++++||+|+|||.......-....++.+++|+.-.. . ... .++ +..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~-~-~~~-----------------------------~~~-~~~ 87 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK-S-QYF-----------------------------SPA-VLE 87 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH-h-hhh-----------------------------hHH-HHh
Confidence 34789999999999876655555555666776664321 0 000 001 111
Q ss_pred HHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhC-CCCcEEEEcccCC
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLS-DNVRFVFLSATIP 205 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~-~~~~~i~~SAT~~ 205 (391)
.+.+.+++++||+|.+... .+...+-.++.... .+.+++++|++.+
T Consensus 88 -------~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 88 -------NLEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred -------hcccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 1347789999999987532 11222333343332 3456677777754
No 208
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.34 E-value=0.0022 Score=73.71 Aligned_cols=137 Identities=13% Similarity=0.124 Sum_probs=83.5
Q ss_pred CCCCcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeC
Q psy6275 55 PFVLDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITG 132 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g 132 (391)
++.+++-|.+|+..+... +-.++.|+.|+|||.+.-.....+-..+.+|+.++||-.-+..+.+........+.-+.+
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g~~A~Ti~~~l~ 506 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIPRLASTFITWVK 506 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhcchhhhHHHHHH
Confidence 567999999999987653 678999999999998754333223345889999999998776665443222111110000
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEccc
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSAT 203 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 203 (391)
.. . ......|...+ + .....+..-++|||||+.++. ...+..++... +.+.++|++.=+
T Consensus 507 ~l--~--~~~~~~tv~~f---l-~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~garvVlvGD~ 566 (1960)
T TIGR02760 507 NL--F--NDDQDHTVQGL---L-DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSKLILLNDS 566 (1960)
T ss_pred hh--c--ccccchhHHHh---h-cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCEEEEEcCh
Confidence 00 0 00011122222 2 222334577899999999774 33455666654 467888887554
No 209
>KOG0388|consensus
Probab=97.31 E-value=0.0011 Score=66.33 Aligned_cols=143 Identities=15% Similarity=0.216 Sum_probs=95.0
Q ss_pred CCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 56 FVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
.++.++|.+.+..+ ..|-|.|+.-..|-|||...+..+.+.... -+..||++|...| +.+++++.+++....
T Consensus 566 ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL-~NWaqEisrFlP~~k 644 (1185)
T KOG0388|consen 566 CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTL-HNWAQEISRFLPSFK 644 (1185)
T ss_pred hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHH-hHHHHHHHHhCccce
Confidence 45778999988765 468899999999999998754443333222 3678999997776 567788888887433
Q ss_pred e--eeCCccc----------------CCCCCEEEEcHHHHHH---HHhcCccccCccceEEEecccccCccccchhHHHH
Q psy6275 129 L--ITGDVTI----------------NPSSSCLIMTTEILRN---MLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET 187 (391)
Q Consensus 129 ~--~~g~~~~----------------~~~~~I~v~Tp~~l~~---~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i 187 (391)
+ +.|+... +...+|+|++++.+.. ++.+ -+..+.|+|||+.+-. +....|..+
T Consensus 645 ~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIKS-SsS~RWKtL 718 (1185)
T KOG0388|consen 645 VLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIKS-SSSSRWKTL 718 (1185)
T ss_pred eecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhhh-hhhhHHHHH
Confidence 3 4454331 2245788888876542 2211 1567999999998744 235556655
Q ss_pred HHHhCCCCcEEEEcccCCCh
Q psy6275 188 LILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 188 ~~~~~~~~~~i~~SAT~~~~ 207 (391)
++.- .+-.+++|+|+-..
T Consensus 719 LsF~--cRNRLLLTGTPIQN 736 (1185)
T KOG0388|consen 719 LSFK--CRNRLLLTGTPIQN 736 (1185)
T ss_pred hhhh--ccceeeecCCccch
Confidence 5532 24468889997543
No 210
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.31 E-value=0.0021 Score=59.81 Aligned_cols=136 Identities=18% Similarity=0.217 Sum_probs=82.3
Q ss_pred CccCCCC-CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 51 AREYPFV-LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 51 ~~~~~~~-~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
-+.+|.. -+..|.-|+..++.. .-+.+.|+-|+|||+.++.+.+... +...+++|.=|+..+..+
T Consensus 221 ~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~d--------- 291 (436)
T COG1875 221 QEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGED--------- 291 (436)
T ss_pred hhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccc---------
Confidence 3456777 556777888887765 3477999999999998877766654 234678888787766532
Q ss_pred ccceeeeCCcccCCC-------------CCEEEEcHHHHHHHHhcCccccCc----------cceEEEecccccCccccc
Q psy6275 125 KDVGLITGDVTINPS-------------SSCLIMTTEILRNMLYRGSEITRE----------VGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 125 ~~v~~~~g~~~~~~~-------------~~I~v~Tp~~l~~~l~~~~~~l~~----------~~~lViDE~h~~~~~~~~ 181 (391)
+|.+-|.....-. .+.==++.+.+...+.+....+.. =.++|+|||+.+- .
T Consensus 292 --IGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT----p 365 (436)
T COG1875 292 --IGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT----P 365 (436)
T ss_pred --cCcCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC----H
Confidence 3344333221100 000011233444444433322211 2489999999874 3
Q ss_pred hhHHHHHHHhCCCCcEEEEc
Q psy6275 182 YVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~S 201 (391)
..+.-++.+.+.+.+++++.
T Consensus 366 heikTiltR~G~GsKIVl~g 385 (436)
T COG1875 366 HELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHHHHHhccCCCEEEEcC
Confidence 35667788888888887753
No 211
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.28 E-value=0.0011 Score=67.77 Aligned_cols=131 Identities=18% Similarity=0.164 Sum_probs=73.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHH---HHHhc-c------cceeeeCCc------
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYRE---FEEQF-K------DVGLITGDV------ 134 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~---~~~~~-~------~v~~~~g~~------ 134 (391)
-|+=|.+.||+|||.+|+-.+...=+. -.+.+|+||+.+.-.-+... ..+.+ + +...+.-+.
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~ 154 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFK 154 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHh
Confidence 367799999999999997766554332 35899999998875553333 33333 1 122221111
Q ss_pred -ccCCCCCEEEEcHHHHHH------HHhcCcc-----------c---cCcc-ceEEEecccccCccccchhHHHHHHHhC
Q psy6275 135 -TINPSSSCLIMTTEILRN------MLYRGSE-----------I---TREV-GWVIFDEIHYMRDKERGYVWEETLILLS 192 (391)
Q Consensus 135 -~~~~~~~I~v~Tp~~l~~------~l~~~~~-----------~---l~~~-~~lViDE~h~~~~~~~~~~~~~i~~~~~ 192 (391)
..+..+.+++.|...+.. ++.+... + +... -.+|+||-|.|... ...+..+....|
T Consensus 155 ~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i~~l~p 232 (985)
T COG3587 155 FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAIKQLNP 232 (985)
T ss_pred hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHHHhhCc
Confidence 112345666666543321 1111111 1 1111 27999999998643 444444444333
Q ss_pred CCCcEEEEcccCCCh
Q psy6275 193 DNVRFVFLSATIPNA 207 (391)
Q Consensus 193 ~~~~~i~~SAT~~~~ 207 (391)
.-++-++||.++.
T Consensus 233 --l~ilRfgATfkd~ 245 (985)
T COG3587 233 --LLILRFGATFKDE 245 (985)
T ss_pred --eEEEEecccchhh
Confidence 4467799998754
No 212
>PRK09183 transposase/IS protein; Provisional
Probab=97.28 E-value=0.0052 Score=56.06 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=33.9
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~ 116 (391)
+..+.++++.||+|+|||..+..........+.+++++ +..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHHHH
Confidence 56788999999999999987765555555567778776 344555444
No 213
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.27 E-value=0.00047 Score=66.23 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=65.8
Q ss_pred CcHHHHHHHHHH------hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH--HHHHHHhccccee
Q psy6275 58 LDPFQKEAILCI------ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK--YREFEEQFKDVGL 129 (391)
Q Consensus 58 ~~~~Q~~~i~~i------~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~--~~~~~~~~~~v~~ 129 (391)
+++-|++++..+ ..+.++++.|+-|+|||+.+-...-..-..+..+++++||-.-|..+ -..+...++ +.+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~-i~~ 80 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFG-IPI 80 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcC-ccc
Confidence 678899998877 67889999999999999986443333333467899999998776655 222333332 111
Q ss_pred eeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 130 ITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 130 ~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
- . ...... .+.. .......++..+++|+||+-++..
T Consensus 81 ~--~---~~~~~~---~~~~----~~~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 81 N--N---NEKSQC---KISK----NSRLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred c--c---cccccc---cccc----cchhhhhhhhheeeecccccchhH
Confidence 0 0 000011 1111 011123467899999999987643
No 214
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.25 E-value=0.0093 Score=56.83 Aligned_cols=124 Identities=16% Similarity=0.184 Sum_probs=71.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH--HhcCCeEEEE-c-ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS--LKQSQRVIYT-T-PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~--l~~~~~vlvl-~-P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++.+.++||||.|||++..-.+.+. +....+|-++ . ..|--|.++.+.+.+..+ + +-.++-+|
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~-v------------p~~vv~~~ 269 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMG-V------------PLEVVYSP 269 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhC-C------------ceEEecCH
Confidence 6789999999999999864333332 2344444444 3 345555555566665552 1 12445567
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh---CCCCcEEEEcccCCChHHHHHHhc
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL---SDNVRFVFLSATIPNASQFAQWVS 215 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~~~~~~~l~ 215 (391)
.-+...+. .+++.++|.+|=+-+-... ...+..+...+ ..---.+.+|||.. .+++.+.+.
T Consensus 270 ~el~~ai~----~l~~~d~ILVDTaGrs~~D--~~~i~el~~~~~~~~~i~~~Lvlsat~K-~~dlkei~~ 333 (407)
T COG1419 270 KELAEAIE----ALRDCDVILVDTAGRSQYD--KEKIEELKELIDVSHSIEVYLVLSATTK-YEDLKEIIK 333 (407)
T ss_pred HHHHHHHH----HhhcCCEEEEeCCCCCccC--HHHHHHHHHHHhccccceEEEEEecCcc-hHHHHHHHH
Confidence 66665554 3667899999999763211 22233333333 23344677899974 444555443
No 215
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.25 E-value=0.0032 Score=56.06 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=25.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+.++++.||+|+|||..+..........+..++++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i 72 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYL 72 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 356899999999999988765554444444555554
No 216
>PHA02533 17 large terminase protein; Provisional
Probab=97.24 E-value=0.0018 Score=64.95 Aligned_cols=141 Identities=11% Similarity=0.167 Sum_probs=84.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHH-HH-HhcCCeEEEEcccHHHHHHHHHHHHHhcccc----
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIA-SS-LKQSQRVIYTTPIKALSNQKYREFEEQFKDV---- 127 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~-~~-l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v---- 127 (391)
.+|.|.|+|...+..+..++-.++..+-..|||.+....++ .. ...+..+++++|+..-+..+++.++......
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 46889999999998876666678888899999998754332 22 3556799999999999999988887654411
Q ss_pred --eeeeC-C--cccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCC--CCcEEEE
Q psy6275 128 --GLITG-D--VTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSD--NVRFVFL 200 (391)
Q Consensus 128 --~~~~g-~--~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~--~~~~i~~ 200 (391)
++... . ........|.+.|.. .....=...+++++||+|.+.+. ...+..+...+.. ..+++..
T Consensus 136 ~~~i~~~~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~~--~e~~~ai~p~lasg~~~r~iii 206 (534)
T PHA02533 136 QPGIVEWNKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPNF--IDFWLAIQPVISSGRSSKIIIT 206 (534)
T ss_pred hcceeecCccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCCH--HHHHHHHHHHHHcCCCceEEEE
Confidence 11110 0 001223334333321 00001115678999999987542 2344444433332 2345454
Q ss_pred ccc
Q psy6275 201 SAT 203 (391)
Q Consensus 201 SAT 203 (391)
|+.
T Consensus 207 STp 209 (534)
T PHA02533 207 STP 209 (534)
T ss_pred ECC
Confidence 444
No 217
>PRK14974 cell division protein FtsY; Provisional
Probab=97.21 E-value=0.01 Score=56.08 Aligned_cols=122 Identities=14% Similarity=0.080 Sum_probs=64.9
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc--HH-HHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI--KA-LSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~--~~-L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
.-++++|++|+|||++....+......+.+++++..- |. ...|+ ..+....+ +.+..+... ..|..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL-~~~a~~lg-v~v~~~~~g---------~dp~~ 209 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQL-EEHAERLG-VKVIKHKYG---------ADPAA 209 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHH-HHHHHHcC-CceecccCC---------CCHHH
Confidence 3578999999999997654444333456677776532 33 33444 33333222 111111100 01222
Q ss_pred -HHHHHhcCccccCccceEEEecccccCc-cccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 150 -LRNMLYRGSEITREVGWVIFDEIHYMRD-KERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 150 -l~~~l~~~~~~l~~~~~lViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
+.+.+... .....++|++|.+..+.. ...-..+..+.....+...++.++||..+.
T Consensus 210 v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 210 VAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred HHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 22222211 123678999999998742 222233444444455667788889987543
No 218
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.17 E-value=0.0026 Score=56.54 Aligned_cols=103 Identities=18% Similarity=0.293 Sum_probs=58.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHHH-h--cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSL-K--QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l-~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
.+++.||+|+|||-. +.++.+.+ . ++.+|+|+.. .+........+... ..+.+
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~-~~f~~~~~~~~~~~----------------------~~~~~ 91 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSA-EEFIREFADALRDG----------------------EIEEF 91 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEH-HHHHHHHHHHHHTT----------------------SHHHH
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecH-HHHHHHHHHHHHcc----------------------cchhh
Confidence 489999999999985 34443333 2 4667777743 45555544444320 12222
Q ss_pred HHHHhcCccccCccceEEEecccccCccc-cchhHHHHHHHh-CCCCcEEEEcccCCCh
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRDKE-RGYVWEETLILL-SDNVRFVFLSATIPNA 207 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 207 (391)
.+ .+...+++++|++|.+.... ....+-.++..+ ..+.++|+.|...|..
T Consensus 92 ~~-------~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 92 KD-------RLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp HH-------HHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred hh-------hhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 22 24589999999999986431 111222333332 3456777777676654
No 219
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.15 E-value=0.0022 Score=61.52 Aligned_cols=87 Identities=15% Similarity=0.153 Sum_probs=54.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEE---cHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIM---TTE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~---Tp~ 148 (391)
|.-+++.|++|+|||+..+..+......+.+++|+.-. +-..|+..+..++.-.. .++.+. ..+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~------------~~l~l~~e~~le 148 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADRLGIST------------ENLYLLAETNLE 148 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHHcCCCc------------ccEEEEccCcHH
Confidence 46689999999999998766665555566789998654 33455554444432110 112222 234
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.+.+.+.. .+.+++|||+++.+.
T Consensus 149 ~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 149 DILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred HHHHHHHh-----cCCcEEEEcchHHhh
Confidence 44444432 267899999999874
No 220
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0034 Score=59.89 Aligned_cols=117 Identities=19% Similarity=0.198 Sum_probs=63.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHH-hcC-CeEEEEcc--cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSL-KQS-QRVIYTTP--IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMT 146 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l-~~~-~~vlvl~P--~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~T 146 (391)
.++.++++||||+|||++....+.... ..+ .++.++.. .+.-+.+....+.+..+ + +-..+-+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~g-v------------~~~~~~~ 202 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILG-V------------PVHAVKD 202 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcC-C------------ceEecCC
Confidence 367899999999999998765554443 334 35554432 23334444444444432 1 1122333
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh----CCCCcEEEEcccCCCh
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL----SDNVRFVFLSATIPNA 207 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~ 207 (391)
++.+...+. .+.+.++++||++-... +...+...+..+ .....++.+|||....
T Consensus 203 ~~~l~~~l~----~l~~~DlVLIDTaG~~~---~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 203 GGDLQLALA----ELRNKHMVLIDTIGMSQ---RDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred cccHHHHHH----HhcCCCEEEEcCCCCCc---ccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 433333332 24467999999997542 122233333333 1223478889998543
No 221
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.14 E-value=0.003 Score=62.54 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=46.3
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
+.+++.||+|+|||............. +.+++++ +..++..+....+... +.+.+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~~~~~~----------------------~~~~~ 205 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDFVNALRNN----------------------TMEEF 205 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHHHcC----------------------cHHHH
Confidence 458999999999998765444444333 4567666 4455655554443210 11222
Q ss_pred HHHHhcCccccCccceEEEecccccCc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
.. .+.+.++|++||+|.+..
T Consensus 206 ~~-------~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 206 KE-------KYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HH-------HHhcCCEEEEehhhhhcC
Confidence 22 233688999999998753
No 222
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.13 E-value=0.0011 Score=57.09 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=37.5
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
+++.||+|+|||...+..+...+..+.+++|+.. .+-..++.+.+..+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6899999999999887777777778888988854 455666666665553
No 223
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.09 E-value=0.0035 Score=58.52 Aligned_cols=111 Identities=9% Similarity=0.085 Sum_probs=61.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
++++++.||+|+|||..+...+......+..+.++ ...+++.++...+.. .+.+..+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~-~~~~l~~~lk~~~~~----------------------~~~~~~l 212 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL-HFPEFIRELKNSISD----------------------GSVKEKI 212 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE-EHHHHHHHHHHHHhc----------------------CcHHHHH
Confidence 46899999999999998765555555566666655 333555555433211 0112222
Q ss_pred HHHhcCccccCccceEEEeccccc--CccccchhHHHHHHHh-CCCCcEEEEcccCCChHHHHHHh
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYM--RDKERGYVWEETLILL-SDNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~--~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~l 214 (391)
. .+.+.++|||||+... .++.+...+..++... .....+++ |.-++ ..++.+.+
T Consensus 213 ~-------~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~-TSNl~-~~el~~~~ 269 (306)
T PRK08939 213 D-------AVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFF-TSNFD-FDELEHHL 269 (306)
T ss_pred H-------HhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEE-ECCCC-HHHHHHHH
Confidence 2 2458999999999854 2332323444454433 34444544 44442 23344443
No 224
>KOG0989|consensus
Probab=97.07 E-value=0.0011 Score=60.28 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=29.8
Q ss_pred ccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 160 ITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 160 ~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
..+.++.+|+||||.|.... ...+...+...+...++++.+.-+.
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChh
Confidence 44578999999999986432 2244455555566677777766543
No 225
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.04 E-value=0.0044 Score=58.79 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=20.5
Q ss_pred HhcCC--cEEEEecCCcchHHHHHHHHHHH
Q psy6275 69 IENNQ--SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 69 i~~~~--~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+..++ ++++.||+|+|||..+.......
T Consensus 31 ~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 31 VDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34455 79999999999998865554333
No 226
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.01 E-value=0.0024 Score=53.27 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=29.1
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L 112 (391)
+++.||+|+|||......+......+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 68999999999998766666655667888888765444
No 227
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.012 Score=56.01 Aligned_cols=126 Identities=12% Similarity=0.134 Sum_probs=68.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCE-EEEcH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSC-LIMTT 147 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I-~v~Tp 147 (391)
.++.++++||+|+|||+...-.+.....++.++.++. |.|.-+..+...+.+.. + ..+ ...+|
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~l---g-----------vpv~~~~dp 270 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKL---D-----------VELIVATSP 270 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcC---C-----------CCEEecCCH
Confidence 4567899999999999887655555555666776664 34443333223332221 1 112 23467
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHH---HhCCCCcEEEEcccCCChHHHHHHh
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI---LLSDNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~---~~~~~~~~i~~SAT~~~~~~~~~~l 214 (391)
+.+...+.... ..+..++|++|=+-+.... ...++.+.. ...+..-++.+||+.. ..+..+.+
T Consensus 271 ~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d--~~~l~EL~~l~~~~~p~~~~LVLsag~~-~~d~~~i~ 336 (407)
T PRK12726 271 AELEEAVQYMT-YVNCVDHILIDTVGRNYLA--EESVSEISAYTDVVHPDLTCFTFSSGMK-SADVMTIL 336 (407)
T ss_pred HHHHHHHHHHH-hcCCCCEEEEECCCCCccC--HHHHHHHHHHhhccCCceEEEECCCccc-HHHHHHHH
Confidence 76655443221 1246899999999765321 223333332 2233333556777753 33444443
No 228
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.01 E-value=0.006 Score=67.89 Aligned_cols=124 Identities=16% Similarity=0.056 Sum_probs=76.7
Q ss_pred CCCCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHH--HHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 55 PFVLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVA--EYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~--~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
...+++-|.+|+..++. ++.+++.|..|+|||++. ++.++..+ ..+.+++.++||-.-+..+.+ ..
T Consensus 833 ~~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e----~G---- 904 (1623)
T PRK14712 833 MEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRS----AG---- 904 (1623)
T ss_pred hcccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHH----hC----
Confidence 34699999999998874 478999999999999975 22233333 235789999999888776632 11
Q ss_pred eeeCCcccCCCCCEEEEcHHHHHHHH----hcCccccCccceEEEecccccCccccchhHHHHHHHhCC-CCcEEEEccc
Q psy6275 129 LITGDVTINPSSSCLIMTTEILRNML----YRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSD-NVRFVFLSAT 203 (391)
Q Consensus 129 ~~~g~~~~~~~~~I~v~Tp~~l~~~l----~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SAT 203 (391)
+--.|-.+++... .........-+++||||+-++.. ..+..++..++. +.++|++.=+
T Consensus 905 -------------i~A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEASMV~~----~~m~~ll~~~~~~garvVLVGD~ 967 (1623)
T PRK14712 905 -------------VDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYALIAAGGGRAVASGDT 967 (1623)
T ss_pred -------------chHhhHHHHhccccchhhcccCCCCCCcEEEEEccccccH----HHHHHHHHhhhhCCCEEEEEcch
Confidence 0011222222110 01111123468999999987743 344555555543 5778777655
No 229
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.00 E-value=0.0054 Score=63.54 Aligned_cols=68 Identities=22% Similarity=0.238 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK----QSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~----~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
..+++-|.+|+-. ...+++|.|+.|||||.+...-+...+. .+.++|+++.++..+.++.+++....+
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 4599999999853 4467899999999999987655544443 245899999999999999999887653
No 230
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.99 E-value=0.0049 Score=60.68 Aligned_cols=104 Identities=15% Similarity=0.267 Sum_probs=57.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
+.+++.||+|+|||.............+.+++|+.. ..+..+....+.. + ..+.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~~~~~l~~---------~-------------~~~~f~~ 198 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEHLVSAIRS---------G-------------EMQRFRQ 198 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHHHHHHHhc---------c-------------hHHHHHH
Confidence 358999999999998765444444445778888753 4454444333321 0 1122211
Q ss_pred HHhcCccccCccceEEEecccccCccc-cchhHHHHHHHh-CCCCcEEEEcccCCC
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRDKE-RGYVWEETLILL-SDNVRFVFLSATIPN 206 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~ 206 (391)
.+...+++++||+|.+.... ....+-.++..+ ..+.++++.|-+.|.
T Consensus 199 -------~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~ 247 (445)
T PRK12422 199 -------FYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQ 247 (445)
T ss_pred -------HcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHH
Confidence 13478999999999875421 111222333322 234566555544443
No 231
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.97 E-value=0.0044 Score=60.54 Aligned_cols=75 Identities=16% Similarity=0.331 Sum_probs=44.4
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
..+++.||+|+|||.......-..... +.+++++. ...+..+....+.. + +.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~~~~~~~~~~~~~~---------~-------------~~~~~ 193 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-SEKFTNDFVNALRN---------N-------------KMEEF 193 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-HHHHHHHHHHHHHc---------C-------------CHHHH
Confidence 357899999999998764433333333 46777774 34454444333221 0 12233
Q ss_pred HHHHhcCccccCccceEEEecccccCc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
... +...++|++||+|.+..
T Consensus 194 ~~~-------~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 194 KEK-------YRSVDLLLIDDIQFLAG 213 (405)
T ss_pred HHH-------HHhCCEEEEehhhhhcC
Confidence 222 23578999999998754
No 232
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.94 E-value=0.01 Score=66.90 Aligned_cols=125 Identities=16% Similarity=0.062 Sum_probs=77.2
Q ss_pred CCCCCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHH--HHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcccc
Q psy6275 54 YPFVLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAE--YAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFKDV 127 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~--~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~v 127 (391)
.++.+++.|.+|+..++. ++-+++.|..|+|||+..- ..++..+. .+.+++.++||-.-+..+.+ ..
T Consensus 964 ~~~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e----~G--- 1036 (1747)
T PRK13709 964 LMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRS----AG--- 1036 (1747)
T ss_pred hcCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHh----cC---
Confidence 345799999999998876 4679999999999998752 22233222 35679999999888766532 11
Q ss_pred eeeeCCcccCCCCCEEEEcHHHHHHHHh----cCccccCccceEEEecccccCccccchhHHHHHHHhCC-CCcEEEEcc
Q psy6275 128 GLITGDVTINPSSSCLIMTTEILRNMLY----RGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSD-NVRFVFLSA 202 (391)
Q Consensus 128 ~~~~g~~~~~~~~~I~v~Tp~~l~~~l~----~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~-~~~~i~~SA 202 (391)
+--.|-.+++.... ........-+++||||+-++.. ..+..++...+. +.++|++.=
T Consensus 1037 --------------i~A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~----~~m~~Ll~~~~~~garvVLVGD 1098 (1747)
T PRK13709 1037 --------------VDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYALIAAGGGRAVSSGD 1098 (1747)
T ss_pred --------------cchhhHHHHhcccccccccccCCCCCCcEEEEEccccccH----HHHHHHHHhhhcCCCEEEEecc
Confidence 00113333322110 1111122458999999987743 345556665553 577877654
Q ss_pred c
Q psy6275 203 T 203 (391)
Q Consensus 203 T 203 (391)
+
T Consensus 1099 ~ 1099 (1747)
T PRK13709 1099 T 1099 (1747)
T ss_pred h
Confidence 4
No 233
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.92 E-value=0.0045 Score=64.35 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+++-|.+|+.. ...+++|.|++|||||.+...-+...+.. +.++|+++.|+..+.++.+++....+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 378999999875 45678999999999999877666666642 35899999999999999999987653
No 234
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.91 E-value=0.0013 Score=69.13 Aligned_cols=120 Identities=16% Similarity=0.152 Sum_probs=75.3
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..++++|.-.--.+..|+ +.-+.||=|||+++.+|+.-..-.|.-|-|+....-||..=++++...+. .+++
T Consensus 166 W~m~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~ 243 (1112)
T PRK12901 166 WDMVHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDC 243 (1112)
T ss_pred CCCcccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCceee
Confidence 44557777776655566665 88999999999999887654434555566666667776554555544444 5555
Q ss_pred eeC-Cccc-----CCCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEeccccc
Q psy6275 130 ITG-DVTI-----NPSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 130 ~~g-~~~~-----~~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
... +... .-.++|+++|..-+ +++|..+ ....+.+.+.|+||+|.+
T Consensus 244 i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSI 302 (1112)
T PRK12901 244 IDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSV 302 (1112)
T ss_pred cCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhh
Confidence 433 2121 12579999997432 2333221 123457889999999975
No 235
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.88 E-value=0.00048 Score=58.48 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=54.3
Q ss_pred EEEecCCcchHHHHHHHHHHHHhcC-CeEEEEcccHHHHHHHHHHHHHhcccceeeeCCc--------ccCCCCCEEEEc
Q psy6275 76 LVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFKDVGLITGDV--------TINPSSSCLIMT 146 (391)
Q Consensus 76 li~apTGsGKT~~~~~~~~~~l~~~-~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~--------~~~~~~~I~v~T 146 (391)
++.|+-|.|||.+.=+.+...+..+ .+++|.+|+.+-+..+++.+...+...+.-.... .......|-+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 5789999999988655554444333 5899999999988888776655544322211000 011245677777
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
|+.+... -...|++|||||=.+. -+.+..+ +. ....++||.|...
T Consensus 81 Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~l---l~-~~~~vv~stTi~G 125 (177)
T PF05127_consen 81 PDELLAE-------KPQADLLIVDEAAAIP----LPLLKQL---LR-RFPRVVFSTTIHG 125 (177)
T ss_dssp HHHHCCT-----------SCEEECTGGGS-----HHHHHHH---HC-CSSEEEEEEEBSS
T ss_pred CHHHHhC-------cCCCCEEEEechhcCC----HHHHHHH---Hh-hCCEEEEEeeccc
Confidence 8765321 1245899999997653 2233333 33 3446677888764
No 236
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.87 E-value=0.0063 Score=54.31 Aligned_cols=128 Identities=16% Similarity=0.124 Sum_probs=69.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHhccc---------ceeeeCCcccCCCC
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQKYREFEEQFKD---------VGLITGDVTINPSS 140 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~~~~~~~~---------v~~~~g~~~~~~~~ 140 (391)
.|..+++.||+|+|||...+..+.+.+.+ +-+++|+.- .+-..++.+.+..+..+ +.++..........
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 35679999999999999888878788777 888888863 44446666666655431 22222221111101
Q ss_pred CEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccch----hHHHHHHHhCCCCcEEEEccc
Q psy6275 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGY----VWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 141 ~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~----~~~~i~~~~~~~~~~i~~SAT 203 (391)
-..++.+...+....... ..+.+|+|-...+....... .+..+...+...-.+.++++.
T Consensus 97 ---~~~~~~l~~~i~~~i~~~-~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 97 ---PNDLEELLSKIREAIEEL-KPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp ---SCCHHHHHHHHHHHHHHH-TSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ---ccCHHHHHHHHHHHHHhc-CCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 233444444443322212 33899999998872222222 233344444443445555555
No 237
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.85 E-value=0.0065 Score=59.96 Aligned_cols=104 Identities=12% Similarity=0.232 Sum_probs=57.8
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
+.+++.|++|+|||... .++.+.+ ..+.+++|+.+ .++..++...+.... +.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~~-----------------------~~ 196 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKTH-----------------------KE 196 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHhh-----------------------hH
Confidence 35899999999999764 3444433 23567777644 666666655543210 11
Q ss_pred HHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHh-CCCCcEEEEcccCC
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILL-SDNVRFVFLSATIP 205 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~-~~~~~~i~~SAT~~ 205 (391)
+..+. ..+.+.+++|+||+|.+... .....+..++..+ ..+.|+|+.|-..|
T Consensus 197 ~~~~~----~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P 250 (450)
T PRK14087 197 IEQFK----NEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSP 250 (450)
T ss_pred HHHHH----HHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 11111 12347889999999987532 1112233333333 34456666555544
No 238
>PRK04195 replication factor C large subunit; Provisional
Probab=96.84 E-value=0.0082 Score=60.02 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
.+.+++.||+|+|||..+...+-.. +..++.+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el---~~~~ieln 71 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY---GWEVIELN 71 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEc
Confidence 4679999999999998764443322 34444443
No 239
>PF13173 AAA_14: AAA domain
Probab=96.84 E-value=0.0099 Score=47.91 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=23.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+++.+++.||.|+|||+.....+-... ...+++++
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi 35 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYI 35 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc-ccccceee
Confidence 356789999999999987654443332 34455555
No 240
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.83 E-value=0.0077 Score=60.87 Aligned_cols=103 Identities=20% Similarity=0.307 Sum_probs=57.7
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
.++++|++|+|||............ .+.+++|+ +..+++++....+... ..+.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi-taeef~~el~~al~~~----------------------~~~~f~ 372 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV-SSEEFTNEFINSIRDG----------------------KGDSFR 372 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe-eHHHHHHHHHHHHHhc----------------------cHHHHH
Confidence 4899999999999875433333322 35677776 4466666554433220 112222
Q ss_pred HHHhcCccccCccceEEEecccccCccc-cchhHHHHHHHh-CCCCcEEEEcccCCC
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYMRDKE-RGYVWEETLILL-SDNVRFVFLSATIPN 206 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~~~~~-~~~~~~~i~~~~-~~~~~~i~~SAT~~~ 206 (391)
. .+.++++|+|||+|.+.... ....+-.++..+ ..+.++|+.|-..+.
T Consensus 373 ~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~ 422 (617)
T PRK14086 373 R-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPK 422 (617)
T ss_pred H-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChH
Confidence 1 24478999999999885432 112222344433 335667765554443
No 241
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.80 E-value=0.025 Score=57.40 Aligned_cols=154 Identities=13% Similarity=0.154 Sum_probs=87.1
Q ss_pred CcHHHHHHHHHH---hcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhcccceee--e
Q psy6275 58 LDPFQKEAILCI---ENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQFKDVGLI--T 131 (391)
Q Consensus 58 ~~~~Q~~~i~~i---~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~--~ 131 (391)
|.|.=.+-|..+ .+.+-.++.+|-|.|||.+..+.+...+. .+.+|+|++|...-+.++++.+...+...+.. .
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~f 249 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWF 249 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhcccccc
Confidence 566555555554 45667889999999999986544443333 57899999999999999888877776522200 0
Q ss_pred CCc---c-c-CCCCCEEEEcHHHHH------HHHh--cCccccCccceEEEecccccCccccchhHHHHHHHhC-CCCcE
Q psy6275 132 GDV---T-I-NPSSSCLIMTTEILR------NMLY--RGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS-DNVRF 197 (391)
Q Consensus 132 g~~---~-~-~~~~~I~v~Tp~~l~------~~l~--~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~ 197 (391)
++. . . .....|.+..|.... .+.. .+...-..++++|+|||..+.+ ..+..++-.+. .+.++
T Consensus 250 p~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l~~~~~k~ 325 (752)
T PHA03333 250 PEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP----GALLSVLPLMAVKGTKQ 325 (752)
T ss_pred CCCceEEEeeCCeeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH----HHHHHHHHHHccCCCce
Confidence 000 0 0 011123332221110 0000 1111113679999999998864 34555554443 45667
Q ss_pred EEEcccCCChHHHHHHhcc
Q psy6275 198 VFLSATIPNASQFAQWVSH 216 (391)
Q Consensus 198 i~~SAT~~~~~~~~~~l~~ 216 (391)
+++|.+-. ...+..++..
T Consensus 326 IiISS~~~-~~s~tS~L~n 343 (752)
T PHA03333 326 IHISSPVD-ADSWISRVGE 343 (752)
T ss_pred EEEeCCCC-cchHHHHhhh
Confidence 77777642 3334444444
No 242
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.78 E-value=0.0073 Score=51.89 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=35.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~ 110 (391)
....++.+..++|.|||.+++-.+++.+..+.+|+++.=.+
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlK 60 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIK 60 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEec
Confidence 35678999999999999999999999999999999996544
No 243
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.78 E-value=0.011 Score=47.32 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=20.2
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+++.||+|+|||..+-..+-.. +..++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccc
Confidence 5899999999998754444332 344444443
No 244
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.76 E-value=0.012 Score=57.13 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=23.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEE
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYT 106 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl 106 (391)
.+++++||+|+|||...-..+-+.-.. +..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 679999999999999865444332222 3455665
No 245
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.75 E-value=0.0075 Score=50.38 Aligned_cols=134 Identities=16% Similarity=0.085 Sum_probs=70.4
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH-HHHHHHhcccceeeeCCcccC-CCCCEEEEcHHH--
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK-YREFEEQFKDVGLITGDVTIN-PSSSCLIMTTEI-- 149 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~-~~~~~~~~~~v~~~~g~~~~~-~~~~I~v~Tp~~-- 149 (391)
-+.+..++|.|||.+++-..++....+.+|+++.=.+.-...- ...++++ +.+.....+.... ...+ .++.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~----~~~~~~ 78 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTEN----DEEDIA 78 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCC----hHHHHH
Confidence 3677888999999999988899989999999964333210000 1122222 2333333222110 0000 1111
Q ss_pred ----HHHHHhcCccccCccceEEEecccccCccccc--hhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHH
Q psy6275 150 ----LRNMLYRGSEITREVGWVIFDEIHYMRDKERG--YVWEETLILLSDNVRFVFLSATIPNA-SQFAQW 213 (391)
Q Consensus 150 ----l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~--~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~ 213 (391)
.+..... ......++++|+||+-...+.+.- ..+..++...+...-+|+.+-.+|.. .+.++.
T Consensus 79 ~a~~~~~~a~~-~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~ 148 (159)
T cd00561 79 AAAEGWAFAKE-AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADL 148 (159)
T ss_pred HHHHHHHHHHH-HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCce
Confidence 1111111 122357999999999876444322 12334555555555666655555544 444443
No 246
>KOG1015|consensus
Probab=96.74 E-value=0.0089 Score=61.86 Aligned_cols=132 Identities=14% Similarity=0.216 Sum_probs=79.0
Q ss_pred CCcEEEEecCCcchHHHH---HHHHHHHHhcC-CeEEEEcccHHHHHHHHHHHHHhccc------ceeee-CCcc-----
Q psy6275 72 NQSVLVSAHTSAGKTVVA---EYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFKD------VGLIT-GDVT----- 135 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~---~~~~~~~l~~~-~~vlvl~P~~~L~~q~~~~~~~~~~~------v~~~~-g~~~----- 135 (391)
|--+|+.=-.|-|||+.. +..++.....+ .++||++|...+ ..|+..|.++... +.+.. +...
T Consensus 696 GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R 774 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELATVKRPEER 774 (1567)
T ss_pred CcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhhhccChHHH
Confidence 344667777899999854 44444443333 589999996655 5677888888762 11110 1111
Q ss_pred ------cCCCCCEEEEcHHHHHHHHhcCc-------------cccCccceEEEecccccCccccchhHHHHHHHhCCCCc
Q psy6275 136 ------INPSSSCLIMTTEILRNMLYRGS-------------EITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196 (391)
Q Consensus 136 ------~~~~~~I~v~Tp~~l~~~l~~~~-------------~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~ 196 (391)
......|.|.-++.+..+..... ..-...++||+||+|.+-.. ...+...+..+.. .+
T Consensus 775 ~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~irt-kR 851 (1567)
T KOG1015|consen 775 SYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIRT-KR 851 (1567)
T ss_pred HHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHHh-he
Confidence 11234688888887665543211 01135689999999988654 4445555555554 44
Q ss_pred EEEEcccCCCh
Q psy6275 197 FVFLSATIPNA 207 (391)
Q Consensus 197 ~i~~SAT~~~~ 207 (391)
.|++|+|+-..
T Consensus 852 RI~LTGTPLQN 862 (1567)
T KOG1015|consen 852 RIILTGTPLQN 862 (1567)
T ss_pred eEEeecCchhh
Confidence 56778887543
No 247
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.74 E-value=0.021 Score=57.76 Aligned_cols=122 Identities=18% Similarity=0.330 Sum_probs=78.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHH-HH--hcCCeEEEEcccHHHHHHHHHHHHHhcc------cceeeeCCccc-----C
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIAS-SL--KQSQRVIYTTPIKALSNQKYREFEEQFK------DVGLITGDVTI-----N 137 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~-~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~------~v~~~~g~~~~-----~ 137 (391)
.+-.++..|--.|||+... +++. .+ ..+.+++|++|.+..++.+++++...+. .+....|+ .+ +
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~n 331 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFPD 331 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEecC
Confidence 3567899999999999765 3333 33 3589999999999999999999888654 12223332 22 1
Q ss_pred CC-CCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEcccCC
Q psy6275 138 PS-SSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSATIP 205 (391)
Q Consensus 138 ~~-~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~ 205 (391)
.. ..|.+++- ...+...=..++++|+|||+.+.+. .+..++-.+ ..++++|.+|.|-.
T Consensus 332 G~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 332 GSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred CCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCC
Confidence 11 23444322 1111122237999999999998653 444444332 35789999998853
No 248
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.006 Score=60.18 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=79.8
Q ss_pred EEecCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHhcc-----cceeeeCCc-----------ccCCC
Q psy6275 77 VSAHTSAGKTVVAEYAIASSLKQSQ-RVIYTTPIKALSNQKYREFEEQFK-----DVGLITGDV-----------TINPS 139 (391)
Q Consensus 77 i~apTGsGKT~~~~~~~~~~l~~~~-~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~g~~-----------~~~~~ 139 (391)
..+.||||||++....+++....|. ..|+.|......+.+...+....+ .-.+..++. .-+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 3578999999998888888887765 477777766666655554443322 001111111 12234
Q ss_pred CCEEEEcHHHHHHHHhcCcc------ccCccc-eEEEecccccCccccc---------hhHHHHHH-Hh-C-CCCcEEEE
Q psy6275 140 SSCLIMTTEILRNMLYRGSE------ITREVG-WVIFDEIHYMRDKERG---------YVWEETLI-LL-S-DNVRFVFL 200 (391)
Q Consensus 140 ~~I~v~Tp~~l~~~l~~~~~------~l~~~~-~lViDE~h~~~~~~~~---------~~~~~i~~-~~-~-~~~~~i~~ 200 (391)
-.|.++|.+.|...+.+... .+.+.. +++-||+|++-...-+ ..|+..+. .+ + ++--++.+
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~lef 161 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLEF 161 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeehh
Confidence 56899999988877654321 233444 4567999998322111 11332222 12 2 34446668
Q ss_pred cccCCChHHHHHH
Q psy6275 201 SATIPNASQFAQW 213 (391)
Q Consensus 201 SAT~~~~~~~~~~ 213 (391)
|||++...++...
T Consensus 162 ~at~~k~k~v~~k 174 (812)
T COG3421 162 SATIPKEKSVEDK 174 (812)
T ss_pred hhcCCccccHHHH
Confidence 9999866666554
No 249
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.72 E-value=0.0071 Score=55.41 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=26.2
Q ss_pred CCcHHHHHHHHHHh----cC-CcEEEEecCCcchHHHHHHH
Q psy6275 57 VLDPFQKEAILCIE----NN-QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~----~~-~~~li~apTGsGKT~~~~~~ 92 (391)
-+++.+.+++..+. .+ ..++++||+|+|||+.....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL 63 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH
Confidence 46677777777552 33 36889999999999876544
No 250
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.70 E-value=0.012 Score=54.43 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=46.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc-C-CeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ-S-QRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~-~-~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++.++++||||+|||++....+...... + .+|.++. |.+.-+.+....+.+..+ +. -..+.++
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~-~p------------~~~~~~~ 260 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILG-VP------------VKVARDP 260 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhC-Cc------------eeccCCH
Confidence 3468899999999999875544444333 3 5665553 333333333333333321 10 0112355
Q ss_pred HHHHHHHhcCccccCccceEEEecc
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEI 172 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~ 172 (391)
..+...+.. +.+.++|++|.+
T Consensus 261 ~~l~~~l~~----~~~~d~vliDt~ 281 (282)
T TIGR03499 261 KELRKALDR----LRDKDLILIDTA 281 (282)
T ss_pred HHHHHHHHH----ccCCCEEEEeCC
Confidence 556555543 346899999975
No 251
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.68 E-value=0.025 Score=55.79 Aligned_cols=76 Identities=16% Similarity=0.294 Sum_probs=44.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
..+++.||+|+|||............. +.+++|+.. ..+..+....+..- +.+.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-~~f~~~~~~~~~~~----------------------~~~~f 187 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVDSMKEG----------------------KLNEF 187 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHhcc----------------------cHHHH
Confidence 368999999999998754443333332 457777754 44444444333210 11222
Q ss_pred HHHHhcCccccCccceEEEecccccCc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
...+. ...+++++||+|.+.+
T Consensus 188 ~~~~~------~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 188 REKYR------KKVDVLLIDDVQFLIG 208 (440)
T ss_pred HHHHH------hcCCEEEEechhhhcC
Confidence 22221 2578999999998754
No 252
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.0075 Score=51.52 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=58.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
++-.+++||.+||||.-.+.-+.+....+.++++..|...--.+. +.+..-.| . ...-++|-.+..+.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD~R~~~--------~~V~Sr~G---~-~~~A~~i~~~~~i~ 71 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAIDTRYGV--------GKVSSRIG---L-SSEAVVIPSDTDIF 71 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEeccccccccc--------ceeeeccC---C-cccceecCChHHHH
Confidence 455789999999999987777777767788999998843321110 01111111 1 12345666666666
Q ss_pred HHHhcCccccCccceEEEecccccCc
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
..+....... .++.+.+|||+.+.+
T Consensus 72 ~~i~~~~~~~-~~~~v~IDEaQF~~~ 96 (201)
T COG1435 72 DEIAALHEKP-PVDCVLIDEAQFFDE 96 (201)
T ss_pred HHHHhcccCC-CcCEEEEehhHhCCH
Confidence 6665443322 389999999997643
No 253
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=96.65 E-value=0.011 Score=62.11 Aligned_cols=66 Identities=23% Similarity=0.201 Sum_probs=54.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++-|.+++.. ...+++|.|+.|||||.+...=+...+.. +.++|+++.|+..+.++.+++.+..+
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 89999999864 45689999999999999876666665542 45899999999999999999988764
No 254
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=96.65 E-value=0.011 Score=62.23 Aligned_cols=66 Identities=23% Similarity=0.206 Sum_probs=54.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK----QSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~----~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++-|.+|+.. ...+++|.|+.|||||.+...=+...+. .+.++|+++-|+..+.++.+++.+..+
T Consensus 10 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 10 LNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred cCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 89999999864 4568999999999999987665555554 246899999999999999999988764
No 255
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.63 E-value=0.0092 Score=56.43 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=54.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
.+.|++||+|+|||..+.+..-.. +....-+..+.+-+.++...+.+.- .
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~gvkdlr~i~e~a~---------------------------~ 98 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTSGVKDLREIIEEAR---------------------------K 98 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccccHHHHHHHHHHHH---------------------------H
Confidence 478999999999999865544322 4445555444444443333322210 0
Q ss_pred HHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
... ...=.++++||+|++... ..+.++..+. +-.+++..||-.|+
T Consensus 99 ~~~-----~gr~tiLflDEIHRfnK~----QQD~lLp~vE-~G~iilIGATTENP 143 (436)
T COG2256 99 NRL-----LGRRTILFLDEIHRFNKA----QQDALLPHVE-NGTIILIGATTENP 143 (436)
T ss_pred HHh-----cCCceEEEEehhhhcChh----hhhhhhhhhc-CCeEEEEeccCCCC
Confidence 010 123358999999987432 3334444444 45677888886655
No 256
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.06 Score=52.08 Aligned_cols=115 Identities=14% Similarity=0.159 Sum_probs=62.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
.-++++||+|+|||+.....+... ...+.++.++. +.|..+.++...+.+..+ +.. +.+..+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lg-vp~------------~~~~~~~~ 290 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMG-MPF------------YPVKDIKK 290 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcC-CCe------------eehHHHHH
Confidence 347899999999999876555443 45566666654 445555554444433321 100 11111333
Q ss_pred HHHHHhcCccccCccceEEEecccccCccccchhHHHH---HHHhC---CCCcEEEEcccCCCh
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET---LILLS---DNVRFVFLSATIPNA 207 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i---~~~~~---~~~~~i~~SAT~~~~ 207 (391)
+...+. -...++|+||=+-..... ...++.+ +.... +.-.++.+|||....
T Consensus 291 l~~~l~-----~~~~D~VLIDTaGr~~rd--~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 291 FKETLA-----RDGSELILIDTAGYSHRN--LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH 347 (432)
T ss_pred HHHHHH-----hCCCCEEEEeCCCCCccC--HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH
Confidence 333332 147899999987764321 2333333 33321 224577889998653
No 257
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.61 E-value=0.013 Score=61.21 Aligned_cols=66 Identities=23% Similarity=0.247 Sum_probs=54.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++-|.+++.. ...+++|.|+.|||||.+...-+...+.. +.++++++.|+..+.++..++.+..+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68899998864 45689999999999999887766666642 36899999999999999999987653
No 258
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.60 E-value=0.019 Score=66.33 Aligned_cols=124 Identities=21% Similarity=0.165 Sum_probs=76.2
Q ss_pred CCCCcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHH---HHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 55 PFVLDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAE---YAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~---~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
.+.+++.|.+|+..+..+ +-+++.|+.|+|||+... -++..... .+.+++.++||..-+.++.+ ..-.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~~----~g~~-- 1090 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKS----AGVQ-- 1090 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHh----cCCc--
Confidence 456999999999987653 567889999999998762 33444333 47789999999888776632 1100
Q ss_pred eeeCCcccCCCCCEEEEcHHHHHHHH--hcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEccc
Q psy6275 129 LITGDVTINPSSSCLIMTTEILRNML--YRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSAT 203 (391)
Q Consensus 129 ~~~g~~~~~~~~~I~v~Tp~~l~~~l--~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 203 (391)
-.|-..++.-. ......+...+++|+||+-++.. ..+..++... ..+.++|++.=+
T Consensus 1091 ---------------a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEasMv~~----~~~~~l~~~~~~~~ak~vlvGD~ 1149 (1960)
T TIGR02760 1091 ---------------AQTLDSFLTDISLYRNSGGDFRNTLFILDESSMVSN----FQLTHATELVQKSGSRAVSLGDI 1149 (1960)
T ss_pred ---------------hHhHHHHhcCcccccccCCCCcccEEEEEccccccH----HHHHHHHHhccCCCCEEEEeCCh
Confidence 01222222100 01111234678999999987643 3455555543 345677766433
No 259
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.60 E-value=0.013 Score=60.21 Aligned_cols=132 Identities=19% Similarity=0.207 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHH---Hhc--CCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 57 VLDPFQKEAILC---IEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 57 ~~~~~Q~~~i~~---i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
..|.-|.+++.. +.+ .+-+++.|.-|-|||.+.=+++...... ..+++|.+|+.+-+..++.-..+-+...++
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~ 290 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGY 290 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCC
Confidence 356666666554 333 3368999999999998764443222222 459999999999888887766665543322
Q ss_pred ee-------CCcccC--CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEE
Q psy6275 130 IT-------GDVTIN--PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFL 200 (391)
Q Consensus 130 ~~-------g~~~~~--~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 200 (391)
-. |..... ....|-+..|.... ..-+++|+|||=.+. -+.+..++.. -+.++|
T Consensus 291 ~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~l~~~----~~rv~~ 352 (758)
T COG1444 291 KRKVAPDALGEIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHKLLRR----FPRVLF 352 (758)
T ss_pred ccccccccccceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHHHHhh----cCceEE
Confidence 11 111111 11234555554321 127899999997653 3344444433 357899
Q ss_pred cccCCC
Q psy6275 201 SATIPN 206 (391)
Q Consensus 201 SAT~~~ 206 (391)
|.|+..
T Consensus 353 sTTIhG 358 (758)
T COG1444 353 STTIHG 358 (758)
T ss_pred Eeeecc
Confidence 999864
No 260
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.55 E-value=0.014 Score=52.18 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=38.1
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
..+..+++.|++|+|||+.....+...+.++.+++++.. .+-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~-e~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST-QLTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHHHHh
Confidence 457789999999999999876666666677888988874 33334555555443
No 261
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.54 E-value=0.025 Score=59.05 Aligned_cols=19 Identities=26% Similarity=0.342 Sum_probs=15.2
Q ss_pred EEEEecCCcchHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~ 93 (391)
++|.|+||+|||.+.-..+
T Consensus 784 LYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3599999999999865443
No 262
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.54 E-value=0.039 Score=54.06 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=60.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc--cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH-
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP--IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI- 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P--~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~- 149 (391)
..++++|++|+|||++....+......+.+++++.. .|.-+.++...+....+ +.+. +... . ..|..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~g-vp~~-~~~~---~-----~d~~~i 165 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIG-VPFY-GDPD---N-----KDAVEI 165 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcC-CcEE-ecCC---c-----cCHHHH
Confidence 458899999999999876555444455667776653 24433333333333221 1111 1000 0 11222
Q ss_pred HHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
+.+.+.. +...++||+|.+-+.... ..-..+..+.....+..-++.++|+...
T Consensus 166 ~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq 219 (437)
T PRK00771 166 AKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ 219 (437)
T ss_pred HHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH
Confidence 2233322 223489999999654321 1111123333344455667777887754
No 263
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.53 E-value=0.039 Score=54.52 Aligned_cols=87 Identities=11% Similarity=0.057 Sum_probs=55.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEE---EcHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLI---MTTE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v---~Tp~ 148 (391)
|.-+++.|++|+|||+..+..+......+.+++|+... +-..|+..+..++.-.. . ++.+ .+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg~~~----~--------~l~~~~e~~~~ 160 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLGLPE----P--------NLYVLSETNWE 160 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcCCCh----H--------HeEEcCCCCHH
Confidence 46789999999999998776666665667789998754 44566655555432110 0 1111 1335
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.+...+.+ .+.+++|||.+..+.
T Consensus 161 ~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 161 QICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred HHHHHHHh-----cCCcEEEEecchhhc
Confidence 55554432 257899999998764
No 264
>PRK05973 replicative DNA helicase; Provisional
Probab=96.52 E-value=0.031 Score=50.05 Aligned_cols=56 Identities=14% Similarity=0.151 Sum_probs=41.3
Q ss_pred HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
-+..|.-++|.|++|+|||...+..+.+...++.+++|+.- .+-..|+.+++....
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE-eCCHHHHHHHHHHcC
Confidence 34567789999999999999887777777777888888853 333566666666553
No 265
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.52 E-value=0.079 Score=48.47 Aligned_cols=118 Identities=14% Similarity=0.081 Sum_probs=65.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc--cH-HHHHHHHHHHHHhcccceeeeCCcccCCCCCEEE-Ec
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP--IK-ALSNQKYREFEEQFKDVGLITGDVTINPSSSCLI-MT 146 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P--~~-~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v-~T 146 (391)
.+..+.+.|++|+|||..+...+......+.++.++.. .+ ..+.|+...... . ...+.. .+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~----~-----------~~~~~~~~~ 138 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT----I-----------GFEVIAVRD 138 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhh----c-----------CceEEecCC
Confidence 44688999999999999876554444444566666543 22 444444322221 1 122222 35
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHH---HhCCCCcEEEEcccCCC
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI---LLSDNVRFVFLSATIPN 206 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~---~~~~~~~~i~~SAT~~~ 206 (391)
++.+...+..-. ....++++++|.+-+.... ...++.+.. ...+...++.+|||...
T Consensus 139 ~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~--~~~l~el~~~~~~~~~~~~~LVl~a~~~~ 198 (270)
T PRK06731 139 EAAMTRALTYFK-EEARVDYILIDTAGKNYRA--SETVEEMIETMGQVEPDYICLTLSASMKS 198 (270)
T ss_pred HHHHHHHHHHHH-hcCCCCEEEEECCCCCcCC--HHHHHHHHHHHhhhCCCeEEEEEcCccCH
Confidence 665555443211 1236899999999875322 333443433 33333446679999743
No 266
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.51 E-value=0.0088 Score=52.56 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=16.3
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.+++++||+|.|||..+.+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA 71 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIA 71 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHHH
Confidence 369999999999998754443
No 267
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.49 E-value=0.024 Score=53.31 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=23.4
Q ss_pred ccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 163 ~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
..+++|+||+|.+........+..++...+.+.++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 568999999998733222233444455555556665544
No 268
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.45 E-value=0.046 Score=54.35 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=63.0
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEE-E
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCL-I 144 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~-v 144 (391)
..++.+.++||||+|||+.....+...... +.++.++. +.+..+.++...+.... ++ .+. +
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iL---gv-----------~v~~a 413 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQL---GI-----------AVHEA 413 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhccc---Cc-----------eeEec
Confidence 356788999999999999875444333222 34555543 23433333222222211 11 111 1
Q ss_pred EcHHHHHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHh
Q psy6275 145 MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 145 ~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l 214 (391)
.+++.+...+.. +.+.++|+||.+-..... .....+..+.. ......+++++++.. ..++.+.+
T Consensus 414 ~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~~~a~lLVLpAtss-~~Dl~eii 478 (559)
T PRK12727 414 DSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRA-ARQVTSLLVLPANAH-FSDLDEVV 478 (559)
T ss_pred CcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHH-hhcCCcEEEEECCCC-hhHHHHHH
Confidence 234455555543 347899999999865221 11111222222 223456778888863 33343433
No 269
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.45 E-value=0.012 Score=58.77 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=49.5
Q ss_pred HHHHHHHHHHh-----cC----CcEEEEecCCcchHHHHHHHHHHHH----hcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 60 PFQKEAILCIE-----NN----QSVLVSAHTSAGKTVVAEYAIASSL----KQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 60 ~~Q~~~i~~i~-----~~----~~~li~apTGsGKT~~~~~~~~~~l----~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
|+|+-.+..+. .+ +.+++.-|-|.|||.......+..+ ..+..+++.+++++-+..+++.+.....
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 67887776653 12 3478888999999987644433333 2367899999999999999999888876
No 270
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0091 Score=57.18 Aligned_cols=104 Identities=17% Similarity=0.180 Sum_probs=51.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcc-cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTP-IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P-~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
.|+++.|+||+|||.+.-..+-+.... +.-++++-- ...-..|++..+-..++.+ +..-. ....
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~------------p~~g~-~~~~ 109 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKV------------PLTGD-SSLE 109 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCC------------CCCCC-chHH
Confidence 579999999999999866555444322 222444421 1112223333332222100 00011 1122
Q ss_pred HHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL 190 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~ 190 (391)
++..+++........-++|+||+|.+.+... ..+..+.+.
T Consensus 110 ~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~ 149 (366)
T COG1474 110 ILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRA 149 (366)
T ss_pred HHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhh
Confidence 3333333222234566999999999976533 444444443
No 271
>PLN03025 replication factor C subunit; Provisional
Probab=96.39 E-value=0.026 Score=53.24 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=18.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
.+++++||+|+|||..+...+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999998765554443
No 272
>KOG1133|consensus
Probab=96.37 E-value=0.0055 Score=61.38 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=37.6
Q ss_pred CCCCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 54 YPFVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
++|+|+++|.+.+..+ .+|+-.|+.+|||+|||+..+-+.+.|+
T Consensus 12 fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 12 FPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 4678999999988754 6789999999999999998877777777
No 273
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=96.37 E-value=0.0068 Score=48.51 Aligned_cols=72 Identities=24% Similarity=0.292 Sum_probs=50.4
Q ss_pred HHHHHHHHc--CCCcEEEEEcchhhHHHHHHHhhccCC--------CChHHHHHHHHHHHHH-hhhcchhhccCcchHhH
Q psy6275 297 KIVKMIMER--NLAPVIVFSFSKKDCEIYAMQMAKLNF--------NETEEVKLVDDVFSNA-MDVLSEEDRKLPQIENI 365 (391)
Q Consensus 297 ~l~~~l~~~--~~~~~iIF~~t~~~~~~la~~L~~~g~--------~~~~~r~~~~~~~~~~-~~~l~~~d~~~~~~~~~ 365 (391)
.+...+... ..+++||||+++..++.+++.|.+.+. ....++..+.+.|++. ...++++
T Consensus 16 ~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t---------- 85 (131)
T cd00079 16 ALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVAT---------- 85 (131)
T ss_pred HHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc----------
Confidence 344444433 357999999999999999999986422 2346677777777773 3444444
Q ss_pred HHHHHhhhhhccCC
Q psy6275 366 LPLLRRGIGIHHGV 379 (391)
Q Consensus 366 ~~~l~~GI~~~h~~ 379 (391)
..+..|+|+..+.
T Consensus 86 -~~~~~G~d~~~~~ 98 (131)
T cd00079 86 -DVIARGIDLPNVS 98 (131)
T ss_pred -ChhhcCcChhhCC
Confidence 5899999997654
No 274
>KOG0991|consensus
Probab=96.37 E-value=0.0048 Score=54.00 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=19.4
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
-|++++||+|+|||++....+...+
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHh
Confidence 4799999999999998665554443
No 275
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.34 E-value=0.0093 Score=55.92 Aligned_cols=55 Identities=20% Similarity=0.354 Sum_probs=40.3
Q ss_pred CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHH
Q psy6275 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALS 113 (391)
Q Consensus 58 ~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L~ 113 (391)
+++.|.+.+.. +..+.|++++|+||||||+.. .+++..+ ..+.+++.+-.+.||.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCcccc
Confidence 67778877765 456789999999999999864 4455554 2456788877777763
No 276
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.34 E-value=0.015 Score=62.42 Aligned_cols=144 Identities=24% Similarity=0.245 Sum_probs=93.1
Q ss_pred CCcHHHHHHHHHHh-----cCCcEEEEecCCcchHHHHHHHHHHHH---hc-CCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 57 VLDPFQKEAILCIE-----NNQSVLVSAHTSAGKTVVAEYAIASSL---KQ-SQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~-----~~~~~li~apTGsGKT~~~~~~~~~~l---~~-~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
++.++|.+.+..+. .+.+.+++...|.|||...+..+.... .. .+..++++|+ +++.++...+.++..
T Consensus 338 ~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~~ 416 (866)
T COG0553 338 ELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPDL 416 (866)
T ss_pred hhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCccc
Confidence 48899999987644 366788999999999987655554322 22 3578999995 556677778877766
Q ss_pred c-ceeeeCCccc--------C--CC------CCEEEEcHHHHHHHHh-cCccccCccceEEEecccccCccccchhHHHH
Q psy6275 126 D-VGLITGDVTI--------N--PS------SSCLIMTTEILRNMLY-RGSEITREVGWVIFDEIHYMRDKERGYVWEET 187 (391)
Q Consensus 126 ~-v~~~~g~~~~--------~--~~------~~I~v~Tp~~l~~~l~-~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i 187 (391)
. +...+|.... . .. .+++++|++.+..... .....-..++.+|+||+|.+... .+.....+
T Consensus 417 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~-~s~~~~~l 495 (866)
T COG0553 417 RLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND-QSSEGKAL 495 (866)
T ss_pred cceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh-hhHHHHHH
Confidence 3 4456665531 0 01 6899999998877321 11112237889999999997543 23333333
Q ss_pred HHHhCCCCcEEEEcccC
Q psy6275 188 LILLSDNVRFVFLSATI 204 (391)
Q Consensus 188 ~~~~~~~~~~i~~SAT~ 204 (391)
. .+.... .+.+|+||
T Consensus 496 ~-~~~~~~-~~~LtgTP 510 (866)
T COG0553 496 Q-FLKALN-RLDLTGTP 510 (866)
T ss_pred H-HHhhcc-eeeCCCCh
Confidence 3 343323 37888887
No 277
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.31 E-value=0.024 Score=59.71 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=54.6
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++-|.+|+.. ...+++|.|+.|||||.+...=+...+.. +.++|+++-|+..+.++..++.+..+
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 5 LNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 89999999975 45689999999999999877666666543 35899999999999999999987753
No 278
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.29 E-value=0.054 Score=49.75 Aligned_cols=122 Identities=15% Similarity=0.199 Sum_probs=65.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH-
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI- 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~- 149 (391)
+-++++||+|+|||++..-.+......+.+++++. +.|.-+.+....+.+..+ +.++..... . .|..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~-i~~~~~~~~----~-----dp~~~ 142 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLG-VDVIKQKEG----A-----DPAAV 142 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCC-eEEEeCCCC----C-----CHHHH
Confidence 45778899999999987555544445667787775 345544444444444432 332222211 1 1222
Q ss_pred HHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhC------CCCcEEEEcccCCC
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLS------DNVRFVFLSATIPN 206 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~------~~~~~i~~SAT~~~ 206 (391)
....+... ..+.++++++|=+-..... ..-..+..+..... ..-.++.++||...
T Consensus 143 ~~~~l~~~--~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~ 204 (272)
T TIGR00064 143 AFDAIQKA--KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ 204 (272)
T ss_pred HHHHHHHH--HHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH
Confidence 12222111 1347899999999875321 11112333333333 44567888998643
No 279
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.033 Score=57.88 Aligned_cols=115 Identities=16% Similarity=0.137 Sum_probs=63.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH-HhcC-CeEEEEcc--cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS-LKQS-QRVIYTTP--IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~-l~~~-~~vlvl~P--~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++-+.++||||+|||++....+... ...+ .++.++.- .|.-+.++...+.+..+ + +-.++.+|
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~g-v------------pv~~~~~~ 251 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILG-V------------PVHAVKDA 251 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCC-C------------CccccCCH
Confidence 3457899999999999875444333 3344 35555542 23223333334443331 1 11223467
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH---HHhCCCCcEEEEcccCC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL---ILLSDNVRFVFLSATIP 205 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~---~~~~~~~~~i~~SAT~~ 205 (391)
+.+...+.. +.+.++|+||=+-+.... ....+.+. ....+...++.+|||..
T Consensus 252 ~~l~~al~~----~~~~D~VLIDTAGRs~~d--~~l~eel~~l~~~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 252 ADLRFALAA----LGDKHLVLIDTVGMSQRD--RNVSEQIAMLCGVGRPVRRLLLLNAASH 306 (767)
T ss_pred HHHHHHHHH----hcCCCEEEEeCCCCCccC--HHHHHHHHHHhccCCCCeEEEEECCCCc
Confidence 777666653 446799999999875322 12222222 22234456778899973
No 280
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=96.24 E-value=0.0068 Score=56.32 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=45.4
Q ss_pred CCC-CcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q psy6275 55 PFV-LDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQ 115 (391)
Q Consensus 55 ~~~-~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q 115 (391)
.|. +++-|.+.+..+... .|++++|.||||||+. +-++...+...-|++.+--|.||-.+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCcccEEEEeehhhhccC
Confidence 444 888899888876555 4999999999999986 44455555566699999888777443
No 281
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.20 E-value=0.036 Score=57.26 Aligned_cols=133 Identities=15% Similarity=0.118 Sum_probs=73.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccC----CCCCEEEEc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTIN----PSSSCLIMT 146 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~----~~~~I~v~T 146 (391)
..+-++++||-|+|||+....... ....+..|.++.-- +--++.+.-++.+...++-.+.+...+ .+.+.-+.-
T Consensus 36 ~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlsld-e~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l 113 (894)
T COG2909 36 DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLD-ESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSL 113 (894)
T ss_pred CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecC-CccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccH
Confidence 456799999999999987655554 44556667776422 112222222222222111111110000 011111222
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
-..+..++..-. ...+.=++|+|+.|.+.+......++.+++..|.+..+++.|=+-|.
T Consensus 114 ~~l~~~L~~Ela-~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 114 ESLLSSLLNELA-SYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred HHHHHHHHHHHH-hhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 222223332111 11123489999999998887778888999999999999998877553
No 282
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.18 E-value=0.042 Score=49.04 Aligned_cols=50 Identities=22% Similarity=0.253 Sum_probs=34.7
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
.|..+++.|++|+|||..+...+.+.+.++..++++.- .+...++....+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~~~ 68 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQAA 68 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHH
Confidence 46789999999999998776666666666778888764 333344444433
No 283
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.14 E-value=0.02 Score=52.62 Aligned_cols=129 Identities=20% Similarity=0.214 Sum_probs=66.3
Q ss_pred CcHHHHHHHHHHh---------cCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEEcccHHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCIE---------NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 58 ~~~~Q~~~i~~i~---------~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
-++.-.+++..+. .-.+++++|+||.|||.+.--..-.+... -+.+++-+|...-....+..+-
T Consensus 38 gY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 38 GYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAIL 117 (302)
T ss_pred cCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHH
Confidence 3355555665441 12589999999999999764433332211 1345555677766666666655
Q ss_pred HhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchh--HHHHHHHhCC--CCcE
Q psy6275 122 EQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYV--WEETLILLSD--NVRF 197 (391)
Q Consensus 122 ~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~--~~~i~~~~~~--~~~~ 197 (391)
..++- +......+--. -.....++.. -.++++||||+|.++....... +-..++.+.+ ...+
T Consensus 118 ~~lga--------P~~~~~~~~~~-~~~~~~llr~-----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipi 183 (302)
T PF05621_consen 118 EALGA--------PYRPRDRVAKL-EQQVLRLLRR-----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPI 183 (302)
T ss_pred HHhCc--------ccCCCCCHHHH-HHHHHHHHHH-----cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCe
Confidence 54421 11111111100 1112233322 2688999999999866432221 2233444443 3445
Q ss_pred EEE
Q psy6275 198 VFL 200 (391)
Q Consensus 198 i~~ 200 (391)
|++
T Consensus 184 V~v 186 (302)
T PF05621_consen 184 VGV 186 (302)
T ss_pred EEe
Confidence 554
No 284
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.14 E-value=0.047 Score=49.12 Aligned_cols=47 Identities=19% Similarity=0.261 Sum_probs=34.9
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcc---cHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTP---IKALSNQK 116 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P---~~~L~~q~ 116 (391)
..|.-+++.|+||+|||...+..+.+...+ +.+++|+.. ..++...+
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH
Confidence 456788999999999998877767776666 888888863 34444443
No 285
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.14 E-value=0.017 Score=53.76 Aligned_cols=93 Identities=22% Similarity=0.307 Sum_probs=56.9
Q ss_pred CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHhcc-cceeeeC
Q psy6275 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKALSNQKYREFEEQFK-DVGLITG 132 (391)
Q Consensus 58 ~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g 132 (391)
+++-|.+.+.. +..+++++++|+||||||+.. .+++..+.. +.+++++-...|+... .. .+.+..+
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~~~--------~~~~v~~~~~ 187 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQCA--------APNVVQLRTS 187 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhcCC--------CCCEEEEEec
Confidence 55556666654 456789999999999999874 444455533 5788888777777321 11 1222211
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccc
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIH 173 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h 173 (391)
. +. .|...++....+ .+.+.+|+.|+-
T Consensus 188 ~-----~~----~~~~~~l~~aLR-----~~pD~iivGEiR 214 (299)
T TIGR02782 188 D-----DA----ISMTRLLKATLR-----LRPDRIIVGEVR 214 (299)
T ss_pred C-----CC----CCHHHHHHHHhc-----CCCCEEEEeccC
Confidence 1 11 155555443321 267899999995
No 286
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.13 E-value=0.011 Score=55.40 Aligned_cols=54 Identities=26% Similarity=0.445 Sum_probs=39.6
Q ss_pred CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHH
Q psy6275 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKAL 112 (391)
Q Consensus 58 ~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L 112 (391)
+++.|.+.+.. +..+++++++|+||||||... .+++..+ ....+++++-.+.|+
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCcc
Confidence 66778888774 567889999999999999654 4444432 345688888777776
No 287
>PTZ00293 thymidine kinase; Provisional
Probab=96.12 E-value=0.048 Score=47.73 Aligned_cols=85 Identities=7% Similarity=-0.026 Sum_probs=51.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh-cccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQ-FKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~-~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
|+--++.||.+||||.-.+-.+.+....+.+++++-|...-- . .......+.+.. . .-+.+.....+
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~DtR---------~~~~~~I~Sh~g~~--~-~a~~v~~~~e~ 71 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTR---------YSDEQNISSHDKQM--L-KAIKVSKLKEV 71 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEeccccc---------CCCCCcEEecCCCc--c-eeEEcCCHHHH
Confidence 555689999999999877777766667788999998854321 1 101111111111 1 12444443333
Q ss_pred HHHHhcCccccCccceEEEeccccc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
...+ .++++|+|||+|.+
T Consensus 72 ~~~~-------~~~dvI~IDEaQFf 89 (211)
T PTZ00293 72 LETA-------KNYDVIAIDEGQFF 89 (211)
T ss_pred HHhc-------cCCCEEEEEchHhh
Confidence 3222 47899999999986
No 288
>KOG1131|consensus
Probab=96.09 E-value=0.072 Score=51.99 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=45.0
Q ss_pred CCCC-CcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHH----hcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 54 YPFV-LDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSL----KQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 54 ~~~~-~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l----~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
++|. .+|-|.+-...+ ..+.+.++.+|+|+|||.+.+..++... ....+++|..-|..-++....+++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 3454 778887766543 4577899999999999988755544432 12457777766655444444444443
No 289
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.07 E-value=0.014 Score=57.05 Aligned_cols=43 Identities=35% Similarity=0.512 Sum_probs=31.4
Q ss_pred CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHhcCC
Q psy6275 58 LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLKQSQ 101 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~~~~ 101 (391)
+.+.|.+.+..+.+. .-+++.||||||||++ ++.++..+..+.
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~~ 286 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTPE 286 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCCC
Confidence 577888888776543 4588999999999987 566666665443
No 290
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.05 E-value=0.14 Score=49.85 Aligned_cols=129 Identities=7% Similarity=0.010 Sum_probs=64.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
-++++|++|+|||++..-.+......+.+++++. |.|.-+.++.+.+.+..+ +.+..... . ..|..+.
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~-vp~~~~~~----~-----~dp~~i~ 171 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKAR-IPFYGSYT----E-----SDPVKIA 171 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccC-CeEEeecC----C-----CCHHHHH
Confidence 4789999999999876544433334566777765 446555544444443321 11111000 0 0121211
Q ss_pred -HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHh
Q psy6275 152 -NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWV 214 (391)
Q Consensus 152 -~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l 214 (391)
+.+.... -..+++||+|=+.++... ..-..+..+.....+...++.++|+.... ...++-+
T Consensus 172 ~~~l~~~~--~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F 235 (429)
T TIGR01425 172 SEGVEKFK--KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAF 235 (429)
T ss_pred HHHHHHHH--hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHH
Confidence 1111110 136899999999765321 11112223333344455577788887644 3344433
No 291
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.01 E-value=0.026 Score=47.76 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=30.6
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
-+.+..++|.|||.+++-.+++....+.+|+++.=
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQF 41 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQF 41 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 47788899999999999889999999999988843
No 292
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.01 E-value=0.13 Score=48.37 Aligned_cols=123 Identities=15% Similarity=0.166 Sum_probs=63.2
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH-
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE- 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~- 148 (391)
++-+.++||+|+|||+.....+......+.+|+++. +.+..+.+....+.... .+.++...... .|.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~-~i~~~~~~~~~---------dpa~ 183 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERV-GVPVIAQKEGA---------DPAS 183 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHc-CceEEEeCCCC---------CHHH
Confidence 446789999999999886544444335567777774 33444433333443333 23332221111 121
Q ss_pred HHHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHh------CCCCcEEEEcccCCC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILL------SDNVRFVFLSATIPN 206 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~------~~~~~~i~~SAT~~~ 206 (391)
.....+... ..++++++|+|=+-.+... ..-..+..+.... .+.-.++.++||...
T Consensus 184 ~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~ 246 (318)
T PRK10416 184 VAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ 246 (318)
T ss_pred HHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh
Confidence 111211111 1247899999999876422 1112233333221 133457888999644
No 293
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.98 E-value=0.094 Score=50.33 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=17.1
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.+++++||+|+|||.+....+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 579999999999998764443
No 294
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.98 E-value=0.011 Score=55.96 Aligned_cols=45 Identities=22% Similarity=0.398 Sum_probs=35.2
Q ss_pred HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
++..++|++++||||||||+. +.+++..+..+.+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccCCCCCEEEECCCcccc
Confidence 346789999999999999976 455566666677888888877774
No 295
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.96 E-value=0.034 Score=57.98 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=25.1
Q ss_pred ccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 163 ~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
...++|+||+|.+... ..+.++..+. +.++++.++|-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE-~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVE-NGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhc-CceEEEEEecCCCh
Confidence 4679999999987432 2334444443 35677777775554
No 296
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.95 E-value=0.066 Score=47.99 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=38.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.|..+++.|++|+|||......+...+.++.+++|+.-.. -..++.+.+..+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~-~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN-TSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC-CHHHHHHHHHHCC
Confidence 3567899999999999988777777777788888886543 3355555555543
No 297
>KOG2028|consensus
Probab=95.95 E-value=0.016 Score=54.07 Aligned_cols=99 Identities=23% Similarity=0.280 Sum_probs=56.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
...+++||+|+|||..+-+.+...-....+.+=+.-|.+-+.++..-+.+.- ..
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq------------------------~~-- 216 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQ------------------------NE-- 216 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHH------------------------HH--
Confidence 3689999999999998755554443334556666666666555544443321 11
Q ss_pred HHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
....+.-..+.+||+|++-... .+.++-.. .+--+++..||-.|+
T Consensus 217 -----~~l~krkTilFiDEiHRFNksQ----QD~fLP~V-E~G~I~lIGATTENP 261 (554)
T KOG2028|consen 217 -----KSLTKRKTILFIDEIHRFNKSQ----QDTFLPHV-ENGDITLIGATTENP 261 (554)
T ss_pred -----HhhhcceeEEEeHHhhhhhhhh----hhccccee-ccCceEEEecccCCC
Confidence 1112345688999999863221 11111111 234567777776655
No 298
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.035 Score=52.45 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHHhc-C---CcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCIEN-N---QSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~-~---~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
++|||...+..+.. + +-.++.||.|.|||..+...+...+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 46899999987754 3 2488999999999987765554443
No 299
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.90 E-value=0.074 Score=48.76 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=31.0
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcc
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTP 108 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P 108 (391)
+..|..+++.|+||+|||......+.+.... +.+++|+.-
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 3567889999999999998776666665555 778888853
No 300
>CHL00181 cbbX CbbX; Provisional
Probab=95.89 E-value=0.059 Score=49.95 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=17.6
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
+.++++.||+|+|||..+-...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999875443
No 301
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.051 Score=52.37 Aligned_cols=105 Identities=18% Similarity=0.265 Sum_probs=56.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
...+++.||+|+|||-......-.....+ .+++++....- ..+....++.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f-~~~~v~a~~~--------------------------- 164 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDF-TNDFVKALRD--------------------------- 164 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHH-HHHHHHHHHh---------------------------
Confidence 35699999999999987554444444443 36666644321 1111111111
Q ss_pred HHHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHh-CCCCcEEEEcccCCCh
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILL-SDNVRFVFLSATIPNA 207 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~ 207 (391)
+-+.+-+... +++++++|+++.+... .....+-.++..+ ..+.|+++.|-.+|..
T Consensus 165 --~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 165 --NEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred --hhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 0011111224 7999999999987543 1222222333333 3445777777666654
No 302
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.85 E-value=0.03 Score=62.27 Aligned_cols=66 Identities=27% Similarity=0.303 Sum_probs=54.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC---CeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS---QRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~---~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+|+-|.++|. ..+++++|.|+-|||||.+...-++..+..+ .++++++=|+..+.++..++.....
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~ 70 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQ 70 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHH
Confidence 5899999997 4788999999999999999877777666443 4699999999999888888777543
No 303
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.83 E-value=0.066 Score=48.93 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=16.7
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.++++.||+|+|||..+-..
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 57899999999999986444
No 304
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.82 E-value=0.049 Score=53.32 Aligned_cols=20 Identities=25% Similarity=0.355 Sum_probs=16.5
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.++++.||+|+|||..+...
T Consensus 37 ~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARII 56 (413)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47999999999999876544
No 305
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.82 E-value=0.012 Score=55.03 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=55.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH---
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT--- 147 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp--- 147 (391)
.|.-+.+.||+|+|||...+..+.+....+.+++|+.....+..+.. +.+.-+. .++++..|
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a---~~lGvd~------------~~l~v~~p~~~ 118 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYA---RKLGVDI------------DNLLVSQPDTG 118 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHH---HHcCCCH------------HHeEEecCCCH
Confidence 34678899999999999888777777778899999976665554422 2221111 12334443
Q ss_pred HHHHHHHhcCccccCccceEEEecccccC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
+..+..+..- ..-..++++|+|-+-.+.
T Consensus 119 eq~l~~~~~l-i~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 119 EQALEIAETL-VRSGAVDIIVVDSVAALV 146 (321)
T ss_pred HHHHHHHHHH-hhccCCcEEEEcchhhhc
Confidence 2233222211 111368999999988653
No 306
>PF05729 NACHT: NACHT domain
Probab=95.81 E-value=0.063 Score=44.78 Aligned_cols=42 Identities=10% Similarity=0.180 Sum_probs=26.6
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcC-----CeEEEEcccHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQS-----QRVIYTTPIKALSNQ 115 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~-----~~vlvl~P~~~L~~q 115 (391)
-++|.|++|+|||......+....... ..+.+..+.+....+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 478999999999997655554444332 134555555555443
No 307
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.79 E-value=0.11 Score=51.35 Aligned_cols=151 Identities=14% Similarity=0.172 Sum_probs=88.4
Q ss_pred CCCccCCCCCcHHHHHHHHHHh------cC----CcEEEEecCCcchHHHHHHHHHHHH----hcCCeEEEEcccHHHHH
Q psy6275 49 KPAREYPFVLDPFQKEAILCIE------NN----QSVLVSAHTSAGKTVVAEYAIASSL----KQSQRVIYTTPIKALSN 114 (391)
Q Consensus 49 ~~~~~~~~~~~~~Q~~~i~~i~------~~----~~~li~apTGsGKT~~~~~~~~~~l----~~~~~vlvl~P~~~L~~ 114 (391)
......++.+-|||.-++-.+. .+ +..+|..|-+-|||..+...+...+ ..+..+.+++|+.+-+.
T Consensus 53 ~~~~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~ 132 (546)
T COG4626 53 PGSPGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAA 132 (546)
T ss_pred CCCCCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHH
Confidence 3345667789999999998774 12 3578999999999986542222211 45789999999999999
Q ss_pred HHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH---HHHHHhcCcc--ccCccceEEEecccccCccccchhHHHHHH
Q psy6275 115 QKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI---LRNMLYRGSE--ITREVGWVIFDEIHYMRDKERGYVWEETLI 189 (391)
Q Consensus 115 q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~---l~~~l~~~~~--~l~~~~~lViDE~h~~~~~~~~~~~~~i~~ 189 (391)
+.+...+.......-+.-. .+-+.+....+... ....+..... .=.+..+.|+||.|...+.+ ..+..+..
T Consensus 133 ~~F~~ar~mv~~~~~l~~~--~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~~~ 208 (546)
T COG4626 133 NSFNPARDMVKRDDDLRDL--CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEAKG 208 (546)
T ss_pred HhhHHHHHHHHhCcchhhh--hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHHHh
Confidence 9988887766532211000 11112221122221 1122222221 22256799999999876532 34444443
Q ss_pred Hh--CCCCcEEEEccc
Q psy6275 190 LL--SDNVRFVFLSAT 203 (391)
Q Consensus 190 ~~--~~~~~~i~~SAT 203 (391)
.+ .++.+++..|..
T Consensus 209 g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 209 GLGARPEGLVVYITTS 224 (546)
T ss_pred hhccCcCceEEEEecC
Confidence 33 345667766653
No 308
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.77 E-value=0.14 Score=49.78 Aligned_cols=125 Identities=11% Similarity=0.201 Sum_probs=72.6
Q ss_pred cEEEEecCCcchHHHHHHHHHH-HHh--cCCeEEEEcccHH-HHHHHHHHHHHhcccceee---e-CCc--c--cCC-CC
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS-SLK--QSQRVIYTTPIKA-LSNQKYREFEEQFKDVGLI---T-GDV--T--INP-SS 140 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~-~l~--~~~~vlvl~P~~~-L~~q~~~~~~~~~~~v~~~---~-g~~--~--~~~-~~ 140 (391)
..++.|+.|||||.+....++. .+. .+.+++++-|+.. +...++..+.......++. . ... . ... ..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g~ 82 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTGK 82 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCCe
Confidence 4688999999999987655444 444 5788999988865 7777777777655433221 0 111 0 111 22
Q ss_pred CEEEEcH-HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC--CCCcEEEEcccCCCh
Q psy6275 141 SCLIMTT-EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS--DNVRFVFLSATIPNA 207 (391)
Q Consensus 141 ~I~v~Tp-~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT~~~~ 207 (391)
.|++..- +.... + .....++++.+|||..+.. ..++.++..++ .....+.+|.||...
T Consensus 83 ~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~----~~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 83 KFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTF----EDIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred EEEeecccCChhH-h----hCcceeeeehhhhhhhcCH----HHHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 2333222 11111 1 1123478999999998743 25555555554 222357889998764
No 309
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.76 E-value=0.04 Score=51.80 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=20.2
Q ss_pred CCc-EEEEecCCcchHHHHHHHHHHHH
Q psy6275 72 NQS-VLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 72 ~~~-~li~apTGsGKT~~~~~~~~~~l 97 (391)
..+ +++.||+|+|||.++....-...
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 456 99999999999998766555544
No 310
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.75 E-value=0.029 Score=57.93 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=17.1
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
-+|++||.|+|||.+.......
T Consensus 40 AyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999876555433
No 311
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.75 E-value=0.042 Score=54.09 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=17.5
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
.++++||.|+|||.++...+..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3799999999999987655443
No 312
>PRK10867 signal recognition particle protein; Provisional
Probab=95.72 E-value=0.23 Score=48.59 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=60.2
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
-++++|++|+|||++..-.+...... +.+++++. +.|..+.++...+.+.. .+.++..... ..|..+
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~-gv~v~~~~~~---------~dp~~i 171 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQI-GVPVFPSGDG---------QDPVDI 171 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhc-CCeEEecCCC---------CCHHHH
Confidence 47899999999999876555544455 66776664 45555543333333332 2222211100 134333
Q ss_pred HH-HHhcCccccCccceEEEecccccCc-cccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 151 RN-MLYRGSEITREVGWVIFDEIHYMRD-KERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 151 ~~-~l~~~~~~l~~~~~lViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.. .+... ....++++|+|=+-++.. ...-..+..+.....+.--++.++|+..
T Consensus 172 ~~~a~~~a--~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g 226 (433)
T PRK10867 172 AKAALEEA--KENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG 226 (433)
T ss_pred HHHHHHHH--HhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH
Confidence 32 22111 123678899998876531 1111122233333333334666677653
No 313
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.72 E-value=0.05 Score=46.15 Aligned_cols=139 Identities=12% Similarity=0.003 Sum_probs=71.4
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc--cC-CCCC-EEEEcHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT--IN-PSSS-CLIMTTE 148 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~--~~-~~~~-I~v~Tp~ 148 (391)
.-+.+.-..|-|||++++--+++....+.+|+++.=.+.-...-...+-+....+.....+.. .. .+.. .-.....
T Consensus 22 Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~ 101 (178)
T PRK07414 22 GLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDTPHLDESEKKALQ 101 (178)
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHHhCCCcEEEECCCCCeeeCCCcCHHHHHHHH
Confidence 346777888999999999999999999999999975554321111222222333433332221 10 0100 0001111
Q ss_pred HHHHHHhcCccccCccceEEEecccccCccccch--hHHHHHHHhCCCCcEEEEcccCCCh-HHHHH
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGY--VWEETLILLSDNVRFVFLSATIPNA-SQFAQ 212 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~--~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~ 212 (391)
..+....+ ...-..++++|+||+-...+.++-. .+..++...|...-+|+..-.+|+. .+.++
T Consensus 102 ~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 102 ELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred HHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 12121111 1112479999999998765543322 2333444445555555544444433 33444
No 314
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.71 E-value=0.04 Score=52.52 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=21.4
Q ss_pred HhcCC---cEEEEecCCcchHHHHHHHHHHHHh
Q psy6275 69 IENNQ---SVLVSAHTSAGKTVVAEYAIASSLK 98 (391)
Q Consensus 69 i~~~~---~~li~apTGsGKT~~~~~~~~~~l~ 98 (391)
+.+++ .+++.||.|+|||..+...+...+.
T Consensus 39 ~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 39 YREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 44554 4899999999999876655544443
No 315
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.69 E-value=0.086 Score=57.06 Aligned_cols=43 Identities=21% Similarity=0.321 Sum_probs=31.6
Q ss_pred ccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 163 ~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.--++|+|++|.+.+......+..++...+.+..+|+.|=+.+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 3458999999998655444566677777888888888776643
No 316
>PRK06620 hypothetical protein; Validated
Probab=95.63 E-value=0.037 Score=48.91 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.3
Q ss_pred CcEEEEecCCcchHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~ 90 (391)
+.++++||+|+|||....
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 448999999999998754
No 317
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=95.62 E-value=0.072 Score=51.42 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=21.6
Q ss_pred HHHhcCCcEEEEecCCcchHHHHHHH
Q psy6275 67 LCIENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 67 ~~i~~~~~~li~apTGsGKT~~~~~~ 92 (391)
+.+.++.|++..||+|+|||..|...
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~~l 229 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYNNL 229 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHH
Confidence 45678899999999999999877543
No 318
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.61 E-value=0.03 Score=47.21 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=55.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh-cccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQ-FKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~-~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
+.+++.||.|+||+..+...+...+....... .+..-.-.. .+... ..++..+..+.. ...|-+-....+.
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c~~c~----~~~~~~~~d~~~~~~~~~---~~~i~i~~ir~i~ 91 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGECRSCR----RIEEGNHPDFIIIKPDKK---KKSIKIDQIREII 91 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSSHHHH----HHHTT-CTTEEEEETTTS---SSSBSHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCHHHH----HHHhccCcceEEEecccc---cchhhHHHHHHHH
Confidence 34799999999999887666655543321100 111111111 11111 112222211111 1123222222233
Q ss_pred HHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
..+..... ....+++|+||||.|... -...+...+..-+.+..+++.|..+
T Consensus 92 ~~~~~~~~-~~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 92 EFLSLSPS-EGKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHCTSS-T-TSSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHh-cCCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 33322222 357899999999998543 1223334444445566666666554
No 319
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.61 E-value=0.029 Score=48.46 Aligned_cols=50 Identities=24% Similarity=0.427 Sum_probs=35.4
Q ss_pred CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 58 ~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+++-|.+.+.. +..+.+++++||||||||+.. ..++..+....+++.+--
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~~~~~~i~ied 60 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFIPPDERIITIED 60 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEECC
Confidence 66777777775 467889999999999999874 334455555556665533
No 320
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.57 E-value=0.03 Score=57.44 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.3
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
.+|++||.|+|||.++...+...
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 57999999999999876555443
No 321
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.026 Score=56.59 Aligned_cols=23 Identities=17% Similarity=0.261 Sum_probs=17.8
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
-++++||.|+|||.++.+.+...
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 40 AYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999998876555443
No 322
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.55 E-value=0.075 Score=48.49 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=42.7
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
-.|+.+++.|++|+|||...+-.+.+.+..+-++++++ +.+...++.+.+..+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs-~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS-TEESPEELLENARSFGW 75 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE-ecCCHHHHHHHHHHcCC
Confidence 35788999999999999988888888888877888874 46666666666666444
No 323
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.52 E-value=0.099 Score=49.08 Aligned_cols=137 Identities=15% Similarity=0.065 Sum_probs=66.6
Q ss_pred CcHHHHHHHHHHh----cCC---cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc-cccee
Q psy6275 58 LDPFQKEAILCIE----NNQ---SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF-KDVGL 129 (391)
Q Consensus 58 ~~~~Q~~~i~~i~----~~~---~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~-~~v~~ 129 (391)
++|||..++..+. +++ -+++.||.|.||+..+...+...+..+....=-++. ...+..-. .++..
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~-------c~~~~~g~HPD~~~ 77 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRT-------RQLIAAGTHPDLQL 77 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchH-------HHHHhcCCCCCEEE
Confidence 7899999988653 343 489999999999987765554444332110000000 01111111 13322
Q ss_pred eeC--Cc-ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 130 ITG--DV-TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 130 ~~g--~~-~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
+.. +. ....+..|.|-....+.+.+...+ .....+++|||+||.|.... ...+-++++.-+.+..+|+.|..
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p-~~g~~kV~iI~~ae~m~~~A-aNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTP-QYGIAQVVIVDPADAINRAA-CNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCc-ccCCcEEEEeccHhhhCHHH-HHHHHHHhhCCCCCCeEEEEECC
Confidence 210 00 000012233322222333333222 23578999999999985321 22233344444455666666543
No 324
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.52 E-value=0.017 Score=54.60 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=34.2
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
+..+++++++|+||||||+. +-+++..+....+++.+=-+.|+.
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~ip~~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREIPAIERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhCCCCCeEEEecCCCccc
Confidence 45788999999999999976 455667777778888876666654
No 325
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.50 E-value=0.039 Score=56.54 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=17.2
Q ss_pred EEEEecCCcchHHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~ 96 (391)
++++||.|+|||.++...+...
T Consensus 41 yLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999875554433
No 326
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.46 E-value=0.021 Score=51.07 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=14.5
Q ss_pred EEEEecCCcchHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~ 93 (391)
+++.|++|||||....-.+
T Consensus 1 ~vv~G~pGsGKSt~i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHHHHHHH
Confidence 4789999999998644333
No 327
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.45 E-value=0.027 Score=50.63 Aligned_cols=53 Identities=19% Similarity=0.264 Sum_probs=40.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.|..+++.||+|+|||...+..+...+.++.+++|+. +.+-..++.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4677999999999999988777777777788898887 4455566666665544
No 328
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.44 E-value=0.084 Score=48.87 Aligned_cols=19 Identities=26% Similarity=0.316 Sum_probs=16.2
Q ss_pred CCcEEEEecCCcchHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~ 90 (391)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 3479999999999998763
No 329
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=95.44 E-value=0.16 Score=43.13 Aligned_cols=136 Identities=20% Similarity=0.148 Sum_probs=70.3
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-ccee------eeCCcccCCCCCEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGL------ITGDVTINPSSSCLIMT 146 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~------~~g~~~~~~~~~I~v~T 146 (391)
-+++....|-|||++++-.+++.+..+.+|.|+.=.+--...-.......+. .+.. ++.+.. +.+.++ ..
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~-~~~~d~--~a 106 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQ-DREADI--AA 106 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCc-CcHHHH--HH
Confidence 3678888899999999999999999999999986443221111122222211 2211 111111 112233 22
Q ss_pred HHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC--CCCcEEEEccc-CCCh-HHHHHHh
Q psy6275 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS--DNVRFVFLSAT-IPNA-SQFAQWV 214 (391)
Q Consensus 147 p~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~--~~~~~i~~SAT-~~~~-~~~~~~l 214 (391)
....+.....-. .-..++++|+||.-..+..++-+ ++.++..+. +.-+-+.+|.. .|.. .+.++.+
T Consensus 107 a~~~w~~a~~~l-~~~~ydlviLDEl~~al~~g~l~-~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 107 AKAGWEHAKEAL-ADGKYDLVILDELNYALRYGLLP-LEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred HHHHHHHHHHHH-hCCCCCEEEEehhhHHHHcCCCC-HHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 333322222111 11269999999998766544332 334444332 23444555554 3333 4455544
No 330
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.41 E-value=0.044 Score=56.91 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=75.0
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cceee
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGLI 130 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~ 130 (391)
|..+..+|.-.- +.-+..-+.-.-||=|||+++.+|+.-..-.+..|.++.-..=|+..-..++..++. .+++.
T Consensus 78 g~~~~dVQliG~--i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~ 155 (822)
T COG0653 78 GMRHFDVQLLGG--IVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVI 155 (822)
T ss_pred CCChhhHHHhhh--hhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeec
Confidence 445566665544 433444588999999999999888644434566677777777776655566555554 56665
Q ss_pred eCCcccCC-----CCCEEEEcHHHHH-HHHh------cCccccCccceEEEeccccc
Q psy6275 131 TGDVTINP-----SSSCLIMTTEILR-NMLY------RGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 131 ~g~~~~~~-----~~~I~v~Tp~~l~-~~l~------~~~~~l~~~~~lViDE~h~~ 175 (391)
..+..... .++|+.+|...+- +++. ......+.+.+.|+||+|.+
T Consensus 156 ~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 156 LAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred cCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 55554332 5789999975421 1111 11233456889999999975
No 331
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.39 E-value=0.02 Score=48.86 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=28.9
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~ 111 (391)
-.++.||.+||||.-.+--+.+.-..+.+++++-|...
T Consensus 3 l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D 40 (176)
T PF00265_consen 3 LEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAID 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTS
T ss_pred EEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 35789999999999876666655567889999988543
No 332
>PRK09354 recA recombinase A; Provisional
Probab=95.38 E-value=0.022 Score=53.86 Aligned_cols=89 Identities=19% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH---H
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT---E 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp---~ 148 (391)
|+-+.+.||+|+|||...+..+.+....+.+++|+....++-.+.+ +.+.-++ .++++..| +
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a---~~lGvdl------------d~lli~qp~~~E 124 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYA---KKLGVDI------------DNLLVSQPDTGE 124 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHH---HHcCCCH------------HHeEEecCCCHH
Confidence 4568899999999999988888787788999999987776665332 2222111 12344433 3
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
..+..+..-. .-..+++||+|=+-.+.
T Consensus 125 q~l~i~~~li-~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 125 QALEIADTLV-RSGAVDLIVVDSVAALV 151 (349)
T ss_pred HHHHHHHHHh-hcCCCCEEEEeChhhhc
Confidence 3333332111 11368899999887653
No 333
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.075 Score=54.03 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=69.6
Q ss_pred CCccCCCCCcHHHHHHHHHH--------hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 50 PAREYPFVLDPFQKEAILCI--------ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i--------~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
-|.+-.|.+-.+-.+.++.+ ..|.-+.++||+|.|||... ..+++.+.
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLg------------------------kSIA~al~ 375 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLG------------------------KSIAKALG 375 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHH------------------------HHHHHHhC
Confidence 34444566667666666643 23445779999999999642 22233333
Q ss_pred Hhcc--cceeeeCCcccCCCCCEEEE-cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 122 EQFK--DVGLITGDVTINPSSSCLIM-TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 122 ~~~~--~v~~~~g~~~~~~~~~I~v~-Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
+.+- .+|-+.....++...+-.|+ -||++.+-+.+... .=-++++||+|.|....+|.--..++.-+
T Consensus 376 RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~---~NPv~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 376 RKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV---KNPVFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred CCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCC---cCCeEEeechhhccCCCCCChHHHHHhhc
Confidence 3222 12223333334444455554 49999988876433 22389999999998777776666666655
No 334
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.14 Score=48.84 Aligned_cols=94 Identities=15% Similarity=0.176 Sum_probs=59.6
Q ss_pred HHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCC
Q psy6275 64 EAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP 138 (391)
Q Consensus 64 ~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~ 138 (391)
.-++.++. |.-+++.|.+|.|||+..+..+.+...++ ++||+.- .|-..|+.-+..++.-.
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsG-EES~~QiklRA~RL~~~------------ 145 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSG-EESLQQIKLRADRLGLP------------ 145 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeC-CcCHHHHHHHHHHhCCC------------
Confidence 33455544 45688999999999988665555554445 9999965 55567777776665310
Q ss_pred CCCEEEEcH---HHHHHHHhcCccccCccceEEEecccccC
Q psy6275 139 SSSCLIMTT---EILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 139 ~~~I~v~Tp---~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
..++.+... +.+...+.+ .+.+++|+|=++.+.
T Consensus 146 ~~~l~l~aEt~~e~I~~~l~~-----~~p~lvVIDSIQT~~ 181 (456)
T COG1066 146 TNNLYLLAETNLEDIIAELEQ-----EKPDLVVIDSIQTLY 181 (456)
T ss_pred ccceEEehhcCHHHHHHHHHh-----cCCCEEEEeccceee
Confidence 133444333 333333433 378899999999874
No 335
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.076 Score=55.93 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=16.9
Q ss_pred EEEEecCCcchHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~ 95 (391)
+|++||.|+|||.++...+..
T Consensus 41 yLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 589999999999987655543
No 336
>PF12846 AAA_10: AAA-like domain
Probab=95.33 E-value=0.028 Score=52.13 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=36.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSN 114 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~ 114 (391)
+.++++.|+||+|||......+.+.+..+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 3689999999999999888777777788999999988866655
No 337
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.30 E-value=0.048 Score=55.61 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.0
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
.++++||.|+|||.++.+.+...
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46999999999999876555443
No 338
>KOG0058|consensus
Probab=95.30 E-value=0.056 Score=55.00 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=31.3
Q ss_pred HHhcCCcEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEE-cccHHHHHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYT-TPIKALSNQKY 117 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl-~P~~~L~~q~~ 117 (391)
.+..|+.+-++||.|+|||+++.+ +..+ ...+++++= +|.+++-..+.
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasL--L~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASL--LLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHH--HHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 457899999999999999997433 3333 334555543 46565544443
No 339
>PHA00729 NTP-binding motif containing protein
Probab=95.25 E-value=0.058 Score=47.74 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=16.4
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.++++.|++|+|||..+...
T Consensus 18 ~nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 47999999999999865443
No 340
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.23 E-value=0.1 Score=47.61 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=72.0
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEccc---HHHHHHHHHHHHHhcccceeeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPI---KALSNQKYREFEEQFKDVGLITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~---~~L~~q~~~~~~~~~~~v~~~~g~~~~--------- 136 (391)
..|.-+++.|+||.|||..++-.+.+.... +..|+|+..- .+++..+......... -.+..|....
T Consensus 17 ~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~-~~i~~g~l~~~e~~~~~~~ 95 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPY-NKIRSGDLSDEEFERLQAA 95 (259)
T ss_dssp -TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTH-HHHHCCGCHHHHHHHHHHH
T ss_pred CcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchh-hhhhccccCHHHHHHHHHH
Confidence 345678999999999999888777777665 5889998653 4444444333322210 0011111110
Q ss_pred ---CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCcc----ccchhHHHHHHHh-----CCCCcEEE
Q psy6275 137 ---NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK----ERGYVWEETLILL-----SDNVRFVF 199 (391)
Q Consensus 137 ---~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~----~~~~~~~~i~~~~-----~~~~~~i~ 199 (391)
-.+..+.+ .|++.+.+.+..-......+++||||=.|.+... .....+..+...+ ..+..+++
T Consensus 96 ~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~ 175 (259)
T PF03796_consen 96 AEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIA 175 (259)
T ss_dssp HHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 00122322 2455565555432222258899999999988553 1222333443333 23577777
Q ss_pred Eccc
Q psy6275 200 LSAT 203 (391)
Q Consensus 200 ~SAT 203 (391)
+|..
T Consensus 176 ~sQl 179 (259)
T PF03796_consen 176 LSQL 179 (259)
T ss_dssp EEEB
T ss_pred cccc
Confidence 7665
No 341
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.23 E-value=0.1 Score=52.30 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=16.6
Q ss_pred EEEEecCCcchHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~ 95 (391)
++++||+|+|||+++...+..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 599999999999987554433
No 342
>KOG2228|consensus
Probab=95.22 E-value=0.22 Score=46.34 Aligned_cols=131 Identities=15% Similarity=0.169 Sum_probs=71.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHH--HHhcCCeEEEEccc--------HHHHHHHHHHHHHhcccceeeeCCcccCCCC
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIAS--SLKQSQRVIYTTPI--------KALSNQKYREFEEQFKDVGLITGDVTINPSS 140 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~--~l~~~~~vlvl~P~--------~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~ 140 (391)
+++.+++.||-|||||...-..+.. ....+.-++=+-++ ++++.|...++.... ...|...
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~----k~~gsft----- 118 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIV----KSFGSFT----- 118 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhh----eeecccc-----
Confidence 4578999999999999754333333 22222223333332 344444444444331 1112111
Q ss_pred CEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC---CCCcEEEEcccCCChHHHHHHh
Q psy6275 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS---DNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 141 ~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~l 214 (391)
-+-..++..+..+...-+.--.+|+||+|....+.+...+..+..... ...-++++|.-+.--+.+.+..
T Consensus 119 ----e~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRV 191 (408)
T KOG2228|consen 119 ----ENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRV 191 (408)
T ss_pred ----hhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHH
Confidence 012456666666554444445789999998877777766666665433 3455667776663334455543
No 343
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.066 Score=53.14 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.3
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
.++++||+|+|||..+...+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999999875544
No 344
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.20 E-value=0.048 Score=55.47 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
-+|++||.|+|||..+.......
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46999999999999876655444
No 345
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.18 E-value=0.14 Score=51.09 Aligned_cols=65 Identities=26% Similarity=0.253 Sum_probs=46.4
Q ss_pred HHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 61 FQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 61 ~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+|.+-=..|. .++-+++.|..|||||.+++.=+...+- +.+.|||+.|.+....-+...+-+++.
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 4444333443 4566899999999999988654433332 245699999999999988888877765
No 346
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.17 E-value=0.39 Score=47.03 Aligned_cols=121 Identities=13% Similarity=0.078 Sum_probs=59.0
Q ss_pred cEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
.++++|++|+|||++..-.+.... ..+.+++++. +.|..+.++...+....+ +.++..... ..|..+
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~g-vp~~~~~~~---------~~P~~i 170 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVG-VPVFALGKG---------QSPVEI 170 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcC-CceEecCCC---------CCHHHH
Confidence 478999999999998755554433 3566777665 345544444444333221 111111100 123222
Q ss_pred H-HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 151 R-NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 151 ~-~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
. ..+.. .....++++|+|=+-.+... ..-..+..+.....+.--++.++|+...
T Consensus 171 ~~~al~~--~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq 226 (428)
T TIGR00959 171 ARRALEY--AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQ 226 (428)
T ss_pred HHHHHHH--HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchH
Confidence 1 11111 01235788999988765321 1111222333333344446666777543
No 347
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.17 E-value=0.38 Score=47.70 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=57.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH-HhcCC-eEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS-LKQSQ-RVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~-l~~~~-~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++-+.++||||+|||++....+... ...+. ++.++. +.|.-+.+....|.+..+ +.. ..+-.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilG-Vpv------------~~~~~~ 322 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILG-VPV------------HAVKDA 322 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhC-CCe------------eccCCc
Confidence 4568899999999999875544333 33443 554443 334444444444444432 111 011112
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC----CCCcEEEEcccCCC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS----DNVRFVFLSATIPN 206 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~----~~~~~i~~SAT~~~ 206 (391)
..+...+ ..+.+.+++++|.+-+... ...+...+..+. +...++.++||...
T Consensus 323 ~Dl~~aL----~~L~d~d~VLIDTaGr~~~---d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~ 378 (484)
T PRK06995 323 ADLRLAL----SELRNKHIVLIDTIGMSQR---DRMVSEQIAMLHGAGAPVKRLLLLNATSHG 378 (484)
T ss_pred hhHHHHH----HhccCCCeEEeCCCCcChh---hHHHHHHHHHHhccCCCCeeEEEEeCCCcH
Confidence 2222212 1355678999999764321 111222222221 22256778998744
No 348
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.059 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=17.0
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
.+++.||+|+|||..+...+-.
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHH
Confidence 3689999999999886554433
No 349
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=95.14 E-value=0.021 Score=50.59 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=22.7
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTP 108 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P 108 (391)
.+.+++.||.|+|||.... -+...+.. +..++++.+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~-~~~~~~~~~~~~~~y~~~ 56 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLK-EFINELKEKGYKVVYIDF 56 (234)
T ss_dssp SSEEEEEESTTSSHHHHHH-HHHHHCT--EECCCHHCC
T ss_pred CcEEEEEcCCcCCHHHHHH-HHHHHhhhcCCcEEEEec
Confidence 4789999999999998643 33333322 234555544
No 350
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.13 E-value=0.024 Score=52.00 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=36.2
Q ss_pred HHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-CeEEEEcccHHH
Q psy6275 60 PFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKAL 112 (391)
Q Consensus 60 ~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-~~vlvl~P~~~L 112 (391)
+...+.+.. +..+.+++++|+||||||+.. ..++..+... .+++++-...|+
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTTTSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH-HHHhhhccccccceEEeccccce
Confidence 334444443 355789999999999999875 5556666666 788888766665
No 351
>PRK09087 hypothetical protein; Validated
Probab=95.11 E-value=0.23 Score=44.27 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.9
Q ss_pred cEEEEecCCcchHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~ 90 (391)
.++++||+|+|||....
T Consensus 46 ~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 46 VVVLAGPVGSGKTHLAS 62 (226)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999998754
No 352
>PRK10436 hypothetical protein; Provisional
Probab=95.06 E-value=0.05 Score=53.72 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=32.3
Q ss_pred CCccCCCCCcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhcC
Q psy6275 50 PAREYPFVLDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQS 100 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~~ 100 (391)
.+..+| +.+.|.+.+..+. .+..++++||||||||++. +.++..+...
T Consensus 196 ~L~~LG--~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~~ 245 (462)
T PRK10436 196 DLETLG--MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNTA 245 (462)
T ss_pred CHHHcC--cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCCC
Confidence 334444 4566777776553 4567999999999999875 4555555443
No 353
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.04 E-value=0.058 Score=49.35 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=36.4
Q ss_pred CccCCCCCcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHH
Q psy6275 51 AREYPFVLDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKA 111 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~ 111 (391)
+..+| +.+.|.+.+..+. .+..++++||||||||+.. ..++..+.. +.+++.+--..|
T Consensus 59 l~~lg--~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~~~~~iitiEdp~E 119 (264)
T cd01129 59 LEKLG--LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNTPEKNIITVEDPVE 119 (264)
T ss_pred HHHcC--CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCCCCCeEEEECCCce
Confidence 44444 4666777776553 3456899999999999875 334444443 455666543333
No 354
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.03 E-value=0.12 Score=45.94 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=30.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
|.-+.+.|++|+|||...+..+.+.+..+.+++|+.-.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 56789999999999998877777766778888888544
No 355
>PHA00350 putative assembly protein
Probab=95.01 E-value=0.16 Score=48.90 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=22.3
Q ss_pred EEEEecCCcchHHHHHH-HHHHHHhcCCeEEE
Q psy6275 75 VLVSAHTSAGKTVVAEY-AIASSLKQSQRVIY 105 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~-~~~~~l~~~~~vlv 105 (391)
.++.|.+|||||+.++. -++..++.+ |.++
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~G-R~V~ 34 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDG-RKVI 34 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCC-CEEE
Confidence 57899999999998765 466666666 4444
No 356
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.99 E-value=0.081 Score=47.99 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=16.9
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.++++.||+|.|||+.+.+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHH
Confidence 479999999999998754443
No 357
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.98 E-value=0.096 Score=46.53 Aligned_cols=97 Identities=11% Similarity=0.071 Sum_probs=53.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcC------CeEEEEcccHHHHH-HHHHHHHHhcccceeeeCCcccCCCCCEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQS------QRVIYTTPIKALSN-QKYREFEEQFKDVGLITGDVTINPSSSCL 143 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~------~~vlvl~P~~~L~~-q~~~~~~~~~~~v~~~~g~~~~~~~~~I~ 143 (391)
.|+-+.+.||+|+|||...+..+......+ .+++|+......-. .+.+..+....... .. ..++.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~------~~--~~~i~ 89 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPE------EV--LDNIY 89 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchh------hh--hccEE
Confidence 356789999999999998776666655555 78888876443211 11111111111100 00 01233
Q ss_pred E---EcHHHHHHHHhcCcc--ccCccceEEEeccccc
Q psy6275 144 I---MTTEILRNMLYRGSE--ITREVGWVIFDEIHYM 175 (391)
Q Consensus 144 v---~Tp~~l~~~l~~~~~--~l~~~~~lViDE~h~~ 175 (391)
+ .+++.+...+..... .-..++++|||-+-.+
T Consensus 90 ~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 90 VARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred EEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 2 345555544433211 1347889999998765
No 358
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.98 E-value=0.023 Score=54.51 Aligned_cols=28 Identities=39% Similarity=0.477 Sum_probs=21.1
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+-.|+.++++||+|+|||..... +.+.+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 35688999999999999986444 44443
No 359
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.95 E-value=0.12 Score=49.48 Aligned_cols=125 Identities=12% Similarity=0.034 Sum_probs=58.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCC----------eEEEEcccHHHHHHHHHHHHHhcc-cceeeeCCccc---CCC
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQ----------RVIYTTPIKALSNQKYREFEEQFK-DVGLITGDVTI---NPS 139 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~----------~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g~~~~---~~~ 139 (391)
-.++.||.|+||+..+...+...+..+. ..+-+++.-.- ...+..... ++..+.-.... ...
T Consensus 43 A~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~----c~~i~~~~HPDl~~i~~~~~~~~~~~~ 118 (365)
T PRK07471 43 AWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV----ARRIAAGAHGGLLTLERSWNEKGKRLR 118 (365)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH----HHHHHccCCCCeEEEeccccccccccc
Confidence 4899999999999887666555543221 11111222111 111211111 33222211000 112
Q ss_pred CCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 140 SSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 140 ~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
..|.|-..-.+.+.+... .......++||||+|.|.... ...+-..+...+....+|++|..+
T Consensus 119 ~~I~VdqiR~l~~~~~~~-~~~~~~kVviIDead~m~~~a-anaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 119 TVITVDEVRELISFFGLT-AAEGGWRVVIVDTADEMNANA-ANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred ccccHHHHHHHHHHhCcC-cccCCCEEEEEechHhcCHHH-HHHHHHHHhcCCCCeEEEEEECCc
Confidence 345444333344444332 234578899999999884321 112223333333445555555443
No 360
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.93 E-value=0.06 Score=54.53 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=18.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.++++||.|+|||..+...+...
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999876655444
No 361
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.87 E-value=0.084 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=20.9
Q ss_pred HHHhcCCcEEEEecCCcchHHHHHH
Q psy6275 67 LCIENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 67 ~~i~~~~~~li~apTGsGKT~~~~~ 91 (391)
-.+..+.++++.||+|+|||..+-.
T Consensus 34 ~aalag~hVLL~GpPGTGKT~LAra 58 (498)
T PRK13531 34 LAALSGESVFLLGPPGIAKSLIARR 58 (498)
T ss_pred HHHccCCCEEEECCCChhHHHHHHH
Confidence 3457899999999999999997633
No 362
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.86 E-value=0.33 Score=45.45 Aligned_cols=20 Identities=25% Similarity=0.253 Sum_probs=16.5
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||+|+|||.+.....
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~ 59 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALA 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 59999999999998765443
No 363
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.83 E-value=0.17 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=18.9
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.++++||.|+|||..+.+.+...
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh
Confidence 358999999999999876655443
No 364
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.80 E-value=0.042 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=17.8
Q ss_pred CcEEEEecCCcchHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~ 94 (391)
+.++++||.|+|||.++.+.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4699999999999998755543
No 365
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.51 Score=46.01 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=60.2
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH-hcC-Ce-EEEEccc-HHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL-KQS-QR-VIYTTPI-KALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l-~~~-~~-vlvl~P~-~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp 147 (391)
++.+.++||||+|||+.....+...+ ..+ .+ .++...+ |.-+.++...+.+..+ +.+ ..+-++
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilG-vp~------------~~v~~~ 257 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLG-VSV------------RSIKDI 257 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcC-Cce------------ecCCCH
Confidence 55688999999999998644333322 222 23 3444444 3333333444444432 111 112234
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh----CCCCcEEEEcccCCChHHHHHHh
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL----SDNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~l 214 (391)
..+...+. .+++.+.+++|.+-+.. +...+..-+..+ .....++.+|||... .++.+.+
T Consensus 258 ~dl~~al~----~l~~~d~VLIDTaGrsq---rd~~~~~~l~~l~~~~~~~~~~LVl~at~~~-~~~~~~~ 320 (420)
T PRK14721 258 ADLQLMLH----ELRGKHMVLIDTVGMSQ---RDQMLAEQIAMLSQCGTQVKHLLLLNATSSG-DTLDEVI 320 (420)
T ss_pred HHHHHHHH----HhcCCCEEEecCCCCCc---chHHHHHHHHHHhccCCCceEEEEEcCCCCH-HHHHHHH
Confidence 44333332 25678999999975431 111121222222 223456779999743 3344433
No 366
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.78 E-value=0.17 Score=49.40 Aligned_cols=34 Identities=15% Similarity=0.227 Sum_probs=27.8
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHH
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~ 91 (391)
+.......+..+..++++++.||+|+|||..+..
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~ 213 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARR 213 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHH
Confidence 5556666777788899999999999999988743
No 367
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.77 E-value=0.03 Score=55.78 Aligned_cols=55 Identities=24% Similarity=0.138 Sum_probs=43.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
.++++.||||||||..+++|.+ +..+..++|.-|..+|...+...+++.+.+|.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~l--l~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~v 99 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNL--LNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYV 99 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHH--HhccCCEEEEECCCcHHHHHHHHHHHCCCEEEE
Confidence 4799999999999999988865 334568999999999998887777766654443
No 368
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.76 E-value=0.1 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.232 Sum_probs=17.5
Q ss_pred EEEEecCCcchHHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~ 96 (391)
++++||.|+|||.++...+...
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999876655443
No 369
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.74 E-value=0.17 Score=51.05 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=17.3
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
.++++||.|+|||..+...+..
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~ 61 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKC 61 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999987655533
No 370
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.71 E-value=0.14 Score=52.09 Aligned_cols=70 Identities=16% Similarity=0.268 Sum_probs=54.7
Q ss_pred CCCcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHH-HHHHHhcc
Q psy6275 56 FVLDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKY-REFEEQFK 125 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~-~~~~~~~~ 125 (391)
...+|+|.+....+... +.+.+..++-+|||.+.+..+...+. .+..++++.||.+++.+.. .++..+..
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 35889999999988654 57999999999999976555544443 3578999999999999887 55666554
No 371
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.70 E-value=0.12 Score=54.66 Aligned_cols=23 Identities=30% Similarity=0.238 Sum_probs=18.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
-+|++||.|+|||.++.+.....
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999876665444
No 372
>KOG0739|consensus
Probab=94.69 E-value=0.43 Score=43.67 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=47.5
Q ss_pred HHHhcCC-----cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCC
Q psy6275 67 LCIENNQ-----SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSS 141 (391)
Q Consensus 67 ~~i~~~~-----~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~ 141 (391)
|.+..|+ -+++.||+|+||+..+-.-+-.+ + ...+-+.+..|+..|.-+-.++.
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---n-STFFSvSSSDLvSKWmGESEkLV----------------- 214 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---N-STFFSVSSSDLVSKWMGESEKLV----------------- 214 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---C-CceEEeehHHHHHHHhccHHHHH-----------------
Confidence 4555553 48999999999997643322221 3 56666777888776643322221
Q ss_pred EEEEcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 142 CLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 142 I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
..|+.+..+ ..-+.+.|||+|.+..
T Consensus 215 ------knLFemARe-----~kPSIIFiDEiDslcg 239 (439)
T KOG0739|consen 215 ------KNLFEMARE-----NKPSIIFIDEIDSLCG 239 (439)
T ss_pred ------HHHHHHHHh-----cCCcEEEeehhhhhcc
Confidence 122222222 2567899999998754
No 373
>PRK08506 replicative DNA helicase; Provisional
Probab=94.68 E-value=0.22 Score=49.55 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=71.4
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc----------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI---------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~---------- 136 (391)
..|.-+++.|.||.|||...+-.+.+....+..|+++.. ..-..|+..++-.....+. +..|....
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~ 268 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSL-EMPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDAC 268 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeC-cCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 456678999999999999887777776666777887743 2334444444433222111 11121110
Q ss_pred --CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCcccc----chhHHHHHHHh-----CCCCcEEEE
Q psy6275 137 --NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER----GYVWEETLILL-----SDNVRFVFL 200 (391)
Q Consensus 137 --~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~----~~~~~~i~~~~-----~~~~~~i~~ 200 (391)
-.+..+.| .|+..+...+.+-......++++|||=.+.|...+. ...+..+.+.+ ..++.++++
T Consensus 269 ~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ipVi~l 348 (472)
T PRK08506 269 DELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELDIPIIAL 348 (472)
T ss_pred HHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 01223433 245555443332111123589999999998853221 11233333332 246778887
Q ss_pred ccc
Q psy6275 201 SAT 203 (391)
Q Consensus 201 SAT 203 (391)
|-.
T Consensus 349 sQL 351 (472)
T PRK08506 349 SQL 351 (472)
T ss_pred eec
Confidence 754
No 374
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.59 E-value=0.21 Score=43.06 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=18.2
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.+++.||+|+|||..+...+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999998765554443
No 375
>PRK06904 replicative DNA helicase; Validated
Probab=94.59 E-value=0.33 Score=48.29 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=70.6
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccc---eeeeC-Ccc--------
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDV---GLITG-DVT-------- 135 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v---~~~~g-~~~-------- 135 (391)
+..|.-+++.|.||.|||..++-.+.+.. ..+..|+++.. .--..|+..++-.....+ .+..| ...
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSl-EMs~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~ 296 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSL-EMPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKIS 296 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEec-cCCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHH
Confidence 45567789999999999987655555543 34667777743 233344444443333211 11222 111
Q ss_pred -----cCCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCcccc----chhHHHHHHHh-----CCCCc
Q psy6275 136 -----INPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER----GYVWEETLILL-----SDNVR 196 (391)
Q Consensus 136 -----~~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~----~~~~~~i~~~~-----~~~~~ 196 (391)
.....++.| .|+..+.....+....-..++++|||=.+.+...+. ...+..+.+.+ ..++.
T Consensus 297 ~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ip 376 (472)
T PRK06904 297 STVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKELKVP 376 (472)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCe
Confidence 111233544 355555443322111112589999999998853322 22233444333 23677
Q ss_pred EEEEccc
Q psy6275 197 FVFLSAT 203 (391)
Q Consensus 197 ~i~~SAT 203 (391)
++++|--
T Consensus 377 Vi~lsQL 383 (472)
T PRK06904 377 VVALSQL 383 (472)
T ss_pred EEEEEec
Confidence 8887743
No 376
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.57 E-value=0.19 Score=48.71 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=18.2
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.+++.||.|+|||..+...+...
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 348999999999998765554443
No 377
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.54 E-value=0.12 Score=54.57 Aligned_cols=68 Identities=9% Similarity=-0.044 Sum_probs=53.0
Q ss_pred CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 139 SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 139 ~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
+..|+++||..+..-+-.+...+..+..+|+||||++.+......+..+.+.-.+..-+.+||+.+..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 46799999999887777888889999999999999986544333444444444556779999999875
No 378
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=0.34 Score=45.69 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHhc--C---CcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 59 DPFQKEAILCIEN--N---QSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 59 ~~~Q~~~i~~i~~--~---~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+|||...+..+.. + +..++.||.|.|||..+...+...+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~ll 46 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALL 46 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHc
Confidence 5888888877642 2 3588999999999988765554433
No 379
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.45 E-value=0.32 Score=51.16 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=18.0
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
..|+++.||+|+|||..+....
T Consensus 207 ~~n~LLvGppGvGKT~lae~la 228 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_pred CCCeEEECCCCCCHHHHHHHHH
Confidence 4689999999999999864443
No 380
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.42 E-value=0.27 Score=48.28 Aligned_cols=39 Identities=18% Similarity=0.337 Sum_probs=29.7
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTT 107 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~ 107 (391)
+..|.-+++.|+||+|||...+..+.+.. ..+..|+|+.
T Consensus 191 ~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS 230 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34567789999999999988766665543 5677888885
No 381
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.36 E-value=0.03 Score=54.32 Aligned_cols=54 Identities=20% Similarity=0.014 Sum_probs=41.8
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
++++.||||||||..+++|-+. ..+..++|+-|.-++...+....+..+..|.+
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll--~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v 54 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLL--TWPGSVVVLDPKGENFELTSEHRRALGRKVFV 54 (384)
T ss_pred CeeEecCCCCCCccEEEccchh--cCCCCEEEEccchhHHHHHHHHHHHcCCeEEE
Confidence 5789999999999998877544 34688999999999998877666655444443
No 382
>KOG2004|consensus
Probab=94.36 E-value=0.18 Score=51.35 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=69.0
Q ss_pred CccCCCCCcHHHHHHHHHH--------hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q psy6275 51 AREYPFVLDPFQKEAILCI--------ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEE 122 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i--------~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~ 122 (391)
|.+-.|.+-++-.+.++.+ ..|+-+.++||+|.|||-+.-.. ... +.+
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSI-A~A-----------------------LnR 464 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSI-ARA-----------------------LNR 464 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHH-HHH-----------------------hCC
Confidence 3344455777777777755 24566889999999999764221 122 222
Q ss_pred hcc--cceeeeCCcccCCCCCEEEE-cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 123 QFK--DVGLITGDVTINPSSSCLIM-TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 123 ~~~--~v~~~~g~~~~~~~~~I~v~-Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
.+- .+|-++.-..+....+-.|+ -|+++.+.+.+... .=-++.+||+|.+.....|.--..++..+
T Consensus 465 kFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t---~NPliLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 465 KFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKT---ENPLILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred ceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCC---CCceEEeehhhhhCCCCCCChHHHHHHhc
Confidence 221 23333333334444455554 49999998876443 22389999999997555565555666655
No 383
>PRK04328 hypothetical protein; Provisional
Probab=94.31 E-value=0.096 Score=47.48 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=39.0
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.|..+++.|++|+|||...+..+.+.+.++.+++|+. +.+-..++.+.++.+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4567899999999999987777777777888888886 4444455555555543
No 384
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.30 E-value=0.26 Score=46.70 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHhc--C---CcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 59 DPFQKEAILCIEN--N---QSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 59 ~~~Q~~~i~~i~~--~---~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+|||...+..+.. + +-+++.||.|.||+..+...+...+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~Ll 46 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLL 46 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHc
Confidence 5788888876642 2 3588999999999988765554443
No 385
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.29 E-value=1.6 Score=40.75 Aligned_cols=122 Identities=15% Similarity=0.206 Sum_probs=72.9
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc--cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH-HH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP--IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE-IL 150 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P--~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~-~l 150 (391)
.++++|-.|+|||++..-.+.....++.+|++.+- .|+-+.++...|.+.. .+.++.+. ...+ |. ..
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~-gv~vI~~~--~G~D-------pAaVa 210 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERL-GVPVISGK--EGAD-------PAAVA 210 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHh-CCeEEccC--CCCC-------cHHHH
Confidence 47899999999999876666556667888888763 4777777766666655 33334432 1111 22 22
Q ss_pred HHHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCC------cEEEEcccCCCh
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNV------RFVFLSATIPNA 207 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~------~~i~~SAT~~~~ 207 (391)
++.+.... -++++++++|=|-+|-.. +.-..++.+.+-..+.. -++.+=||..+.
T Consensus 211 fDAi~~Ak--ar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 211 FDAIQAAK--ARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred HHHHHHHH--HcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 23333222 348999999999988543 12223444444443322 344457887654
No 386
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.29 E-value=0.39 Score=45.22 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=27.4
Q ss_pred cHHHHHHHHHH----hcC---CcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 59 DPFQKEAILCI----ENN---QSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 59 ~~~Q~~~i~~i----~~~---~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+|||...+..+ .++ +-.++.||.|.||+..+...+...+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~ll 49 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLM 49 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHc
Confidence 47777776654 344 3578999999999988766554444
No 387
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.26 E-value=0.076 Score=49.63 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=15.9
Q ss_pred CcEEEEecCCcchHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~ 91 (391)
.+++++||+|+|||..+..
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999987543
No 388
>KOG0298|consensus
Probab=94.25 E-value=0.2 Score=53.86 Aligned_cols=133 Identities=19% Similarity=0.140 Sum_probs=83.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHh------------------cCCeEEEEcccHHHHHHHHHHHHHhcc---ccee
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLK------------------QSQRVIYTTPIKALSNQKYREFEEQFK---DVGL 129 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~------------------~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~ 129 (391)
.|+.++++-..|.|||..-+...+..+. ..+-.||++| .++..||..++.+-.. ++-.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P-~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICP-NAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECc-HHHHHHHHHHHHHhccccceEEE
Confidence 4567888899999999987655544331 1356899999 5677899988888766 2333
Q ss_pred eeCCccc-------CCCCCEEEEcHHHHHHHHhcC--cc----------------ccCccc--eEEEecccccCccccch
Q psy6275 130 ITGDVTI-------NPSSSCLIMTTEILRNMLYRG--SE----------------ITREVG--WVIFDEIHYMRDKERGY 182 (391)
Q Consensus 130 ~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~--~~----------------~l~~~~--~lViDE~h~~~~~~~~~ 182 (391)
.-|-... --+++|+++|+..|..-+... .. +|-.+. -+++|||+.+... ..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--sS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--SS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--HH
Confidence 3331111 126899999999988655422 00 111111 4899999987542 44
Q ss_pred hHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 183 VWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 183 ~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
........++. ...-+.|+||-..
T Consensus 530 ~~a~M~~rL~~-in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 530 AAAEMVRRLHA-INRWCVTGTPIQK 553 (1394)
T ss_pred HHHHHHHHhhh-hceeeecCCchhh
Confidence 44455555553 4456789996443
No 389
>KOG1513|consensus
Probab=94.23 E-value=0.083 Score=54.06 Aligned_cols=145 Identities=21% Similarity=0.215 Sum_probs=89.8
Q ss_pred CcHHHHHHHHHHh--------cCC--cEEEEecCCcchHHHH-HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-
Q psy6275 58 LDPFQKEAILCIE--------NNQ--SVLVSAHTSAGKTVVA-EYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK- 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~--------~~~--~~li~apTGsGKT~~~-~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~- 125 (391)
+...|-+++-... +|. -+++--.-|.||-.+. -+..-..++...++|++.=+..|--+..+.++....
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~DigA~ 344 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIGAT 344 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcCCC
Confidence 7889999886432 222 2566666677775543 233344566678999999988898888888887765
Q ss_pred c----------ceeeeCCcccCCCCCEEEEcHHHHHHHHh---------------cCccccCccceEEEecccccCc---
Q psy6275 126 D----------VGLITGDVTINPSSSCLIMTTEILRNMLY---------------RGSEITREVGWVIFDEIHYMRD--- 177 (391)
Q Consensus 126 ~----------v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~---------------~~~~~l~~~~~lViDE~h~~~~--- 177 (391)
. .+.+.++..-+-+.-++++|+..|...-. ..... --+++|+||||..-.
T Consensus 345 ~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~--feGvIvfDECHkAKNL~p 422 (1300)
T KOG1513|consen 345 GIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGED--FEGVIVFDECHKAKNLVP 422 (1300)
T ss_pred CccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhc--cceeEEehhhhhhccccc
Confidence 1 12233333333355699999876553221 11111 125899999997422
Q ss_pred ------cccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 178 ------KERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 178 ------~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
...|..+-.+-..+| +.+++..|||=.
T Consensus 423 ~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGA 455 (1300)
T KOG1513|consen 423 TAGAKSTKTGKTVLDLQKKLP-NARVVYASATGA 455 (1300)
T ss_pred ccCCCcCcccHhHHHHHHhCC-CceEEEeeccCC
Confidence 113444555556665 588999999943
No 390
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=94.18 E-value=0.15 Score=52.49 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=44.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH--HHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA--LSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~--L~~q~~~~~~~~~~ 125 (391)
..+++++.|+||+|||..+...+.+.+..+..++++=|-.. |...+....+..+.
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 35789999999999999887777778888888999989864 77777766666654
No 391
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.17 E-value=0.064 Score=51.35 Aligned_cols=37 Identities=35% Similarity=0.381 Sum_probs=24.6
Q ss_pred HHHHHHHHH---HhcCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 60 PFQKEAILC---IENNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 60 ~~Q~~~i~~---i~~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+.=.++|.. +-.|+..+|.||.|+|||..... +...+
T Consensus 154 ~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~-Ian~I 193 (416)
T PRK09376 154 DLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQN-IANSI 193 (416)
T ss_pred ccceeeeeeecccccCceEEEeCCCCCChhHHHHH-HHHHH
Confidence 333444443 35688999999999999976533 33433
No 392
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.17 E-value=0.12 Score=48.94 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=17.1
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.++++.||+|+|||..+...+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 579999999999998765443
No 393
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=94.16 E-value=0.11 Score=44.12 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=28.3
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~ 111 (391)
-+.+.-..|-|||++++--+++.+..+.+|+++.=.+.
T Consensus 5 ~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg 42 (172)
T PF02572_consen 5 LIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKG 42 (172)
T ss_dssp -EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecC
Confidence 46678888999999999999999999999999976665
No 394
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=94.15 E-value=0.15 Score=52.17 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=24.8
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEE
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIY 105 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlv 105 (391)
+..|+.+-++||||||||+..-+...-.-...+++++
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 5678889999999999988643332211123566766
No 395
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.11 E-value=0.32 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=19.4
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
..|+++.||+|+|||..+-..+...
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999865544443
No 396
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=94.11 E-value=0.11 Score=53.06 Aligned_cols=47 Identities=32% Similarity=0.361 Sum_probs=31.8
Q ss_pred CCccCCCCCcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhc
Q psy6275 50 PAREYPFVLDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQ 99 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~ 99 (391)
.+.++|| .+.|.+.+..+. ....++++||||||||++. ..++..+..
T Consensus 294 ~l~~lg~--~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~~ 342 (564)
T TIGR02538 294 DIDKLGF--EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILNT 342 (564)
T ss_pred CHHHcCC--CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhCC
Confidence 3445554 566777776553 3567899999999999884 555566543
No 397
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.11 E-value=0.29 Score=52.03 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=16.8
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+++.||+|+|||..+...
T Consensus 347 ~~~lll~GppG~GKT~lAk~i 367 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSI 367 (775)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457999999999999875433
No 398
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.08 E-value=0.45 Score=44.59 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=25.9
Q ss_pred CCCCcHHHHHHH-HHHhcCCcEEEEecCCcchHHHHHHH
Q psy6275 55 PFVLDPFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 55 ~~~~~~~Q~~~i-~~i~~~~~~li~apTGsGKT~~~~~~ 92 (391)
+|.+.+--.+++ -.+..++++++.||+|+|||......
T Consensus 46 ~y~f~~~~~~~vl~~l~~~~~ilL~G~pGtGKTtla~~l 84 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYDRRVMVQGYHGTGKSTHIEQI 84 (327)
T ss_pred CccCCHHHHHHHHHHHhcCCcEEEEeCCCChHHHHHHHH
Confidence 444554444433 34567889999999999999875433
No 399
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=94.07 E-value=0.084 Score=49.49 Aligned_cols=43 Identities=19% Similarity=0.427 Sum_probs=29.7
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L 112 (391)
+..+.+++++||||||||+.. ..++..+....+++++-...++
T Consensus 141 v~~~~~ili~G~tGsGKTTll-~al~~~~~~~~~iv~ied~~El 183 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL-KSLVDEIPKDERIITIEDTREI 183 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH-HHHHccCCccccEEEEcCcccc
Confidence 457889999999999999864 3344555555666666444443
No 400
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.05 E-value=0.056 Score=49.40 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=20.7
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ 99 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~ 99 (391)
..-+++.||||||||++ +.+++..+.+
T Consensus 125 ~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 125 RGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred CceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 44689999999999987 5556666654
No 401
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.04 E-value=0.11 Score=52.33 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=17.1
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
-++++||+|+|||+++...+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3689999999999887555433
No 402
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.03 E-value=0.21 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=18.9
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.++++||.|+|||.++.+.+...
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999876555443
No 403
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.98 E-value=0.13 Score=52.55 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=17.5
Q ss_pred EEEEecCCcchHHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~ 96 (391)
++++||.|+|||.++.+.+...
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999876654443
No 404
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.98 E-value=0.11 Score=48.68 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=51.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH---
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE--- 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~--- 148 (391)
|+-+-+.||+|+|||..++..+.+....+..++++-+..+|-......+-- ++ .+++|..|+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGv---dl------------~rllv~~P~~~E 117 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGV---DL------------DRLLVVQPDTGE 117 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT-----G------------GGEEEEE-SSHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCc---cc------------cceEEecCCcHH
Confidence 456779999999999988877776667789999999988886665443321 11 145666553
Q ss_pred HHHHHHhcCccccCccceEEEeccccc
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
..++....- ..-..++++|+|=+-.+
T Consensus 118 ~al~~~e~l-irsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 118 QALWIAEQL-IRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHHHHHH-HHTTSESEEEEE-CTT-
T ss_pred HHHHHHHHH-hhcccccEEEEecCccc
Confidence 222222111 11235789999977654
No 405
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=93.96 E-value=0.14 Score=46.05 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=55.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhcc---cceeeeCCc-cc--------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 100 SQRVIYTTPIKALSNQKYREFEEQFK---DVGLITGDV-TI--------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 100 ~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~~~g~~-~~--------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
.+.+||++.+--=+.++.+.++.+.+ .+..+.... .+ ....+|.||||+|+..++..+...+..+.+|
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~i 205 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRI 205 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEE
Confidence 46888888887778888888887742 222222211 11 2357899999999999999888889999999
Q ss_pred EEecccc
Q psy6275 168 IFDEIHY 174 (391)
Q Consensus 168 ViDE~h~ 174 (391)
|+|--|.
T Consensus 206 vlD~s~~ 212 (252)
T PF14617_consen 206 VLDWSYL 212 (252)
T ss_pred EEcCCcc
Confidence 9998663
No 406
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.95 E-value=0.43 Score=45.70 Aligned_cols=106 Identities=18% Similarity=0.232 Sum_probs=61.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHh--cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~--~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
.+.+.+.|+.|+|||...-+.. +.+. ...|+ ...+-+.++.+.+.... |. .+- -..
T Consensus 62 ~~GlYl~G~vG~GKT~Lmd~f~-~~lp~~~k~R~----HFh~Fm~~vh~~l~~~~-------~~------~~~----l~~ 119 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTMLMDLFY-DSLPIKRKRRV----HFHEFMLDVHSRLHQLR-------GQ------DDP----LPQ 119 (362)
T ss_pred CceEEEECCCCCchhHHHHHHH-HhCCccccccc----cccHHHHHHHHHHHHHh-------CC------Ccc----HHH
Confidence 4678999999999998653332 2221 12222 44567777777776654 10 000 011
Q ss_pred HHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEcccCCC
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSATIPN 206 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~ 206 (391)
+...+ .+...+|.+||+|.- |-+....+..++..+ ..+.-+|+.|-+.|+
T Consensus 120 va~~l------~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~ 170 (362)
T PF03969_consen 120 VADEL------AKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPE 170 (362)
T ss_pred HHHHH------HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChH
Confidence 11222 346779999999953 333344455555543 556777777777764
No 407
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=93.92 E-value=0.067 Score=51.83 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=33.3
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYR 118 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~ 118 (391)
...+++++.|.||||||.+....+-+...++.+++|.-|.-+.....++
T Consensus 13 ~e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHHH--
T ss_pred hhhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHHhcC
Confidence 4568999999999999986544444455677888888888887666554
No 408
>PRK07004 replicative DNA helicase; Provisional
Probab=93.91 E-value=0.3 Score=48.42 Aligned_cols=133 Identities=18% Similarity=0.149 Sum_probs=67.3
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~--------- 136 (391)
..|.-+++.|.||+|||..++-.+.+. +..+..++++.. .--..|+..++-.....+. +..|....
T Consensus 211 ~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSl-EM~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a 289 (460)
T PRK07004 211 HGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSM-EMPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHA 289 (460)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeC-CCCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 456778999999999998776555543 345667777742 2222333333322111110 11121110
Q ss_pred ---CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCccc----cchhHHHHHHHhC-----CCCcEEE
Q psy6275 137 ---NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE----RGYVWEETLILLS-----DNVRFVF 199 (391)
Q Consensus 137 ---~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~----~~~~~~~i~~~~~-----~~~~~i~ 199 (391)
-.+.++.| .|+..+.....+-......+++||||=.+.+.... +...+..+.+.+. .++.+++
T Consensus 290 ~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~ 369 (460)
T PRK07004 290 VQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKELDVPVIA 369 (460)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 01234544 34444443332211112358999999999885322 1112334444332 3677877
Q ss_pred Eccc
Q psy6275 200 LSAT 203 (391)
Q Consensus 200 ~SAT 203 (391)
+|--
T Consensus 370 lsQL 373 (460)
T PRK07004 370 LSQL 373 (460)
T ss_pred Eecc
Confidence 7754
No 409
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.89 E-value=0.36 Score=45.30 Aligned_cols=60 Identities=12% Similarity=0.167 Sum_probs=32.5
Q ss_pred CEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 141 SCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 141 ~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
.|-|-....+.+.+...+ .....+++|||++|.|... -...+-..+..-+ +..+|+.|..
T Consensus 103 ~I~id~ir~i~~~l~~~p-~~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 103 QIRLEQIREIKRFLSRPP-LEAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred cCcHHHHHHHHHHHccCc-ccCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 344444444555554433 3468999999999998532 1222333344334 5555555443
No 410
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.87 E-value=0.086 Score=49.42 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=42.4
Q ss_pred CcHHHHHHHH-HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 58 LDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 58 ~~~~Q~~~i~-~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
+.+.|..-+. ++..+++++++|+||||||.. +.+++..+....+++.+=-+.++.
T Consensus 128 ~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~Ip~~~rivtIEdt~E~~ 183 (312)
T COG0630 128 ISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFIPPEERIVTIEDTPELK 183 (312)
T ss_pred CCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhCCchhcEEEEecccccc
Confidence 6666666554 456789999999999999976 677777777788888886666653
No 411
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=93.87 E-value=0.095 Score=46.75 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=35.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQ 115 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q 115 (391)
++++.|.|.||||||......+.+.+ ..+..++|+=|.-+-..-
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GEY~~~ 67 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGEYASL 67 (229)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCcchhh
Confidence 46899999999999998777776776 778899999887665443
No 412
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.86 E-value=0.17 Score=43.70 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=35.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHh----------cCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLK----------QSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~----------~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.|.-+++.||+|+|||...+..+..... .+.+|+|+..... ..++..++.....
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 5677999999999999987665555543 4568888866544 4566666665543
No 413
>KOG0742|consensus
Probab=93.76 E-value=0.11 Score=49.52 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=15.5
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
+|++..||+|+|||..+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 78999999999999874
No 414
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.72 E-value=0.59 Score=50.16 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=18.7
Q ss_pred CCcEEEEecCCcchHHHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~ 95 (391)
..|.++.||+|+|||......+..
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999986544433
No 415
>PRK05748 replicative DNA helicase; Provisional
Probab=93.71 E-value=0.41 Score=47.47 Aligned_cols=134 Identities=19% Similarity=0.167 Sum_probs=69.6
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~--------- 136 (391)
..|.-+++.|+||+|||...+-.+.+.. ..+..++++. ...-..|+..++-.....+. +..|....
T Consensus 201 ~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fS-lEms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a 279 (448)
T PRK05748 201 QPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFS-LEMGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIA 279 (448)
T ss_pred CCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEe-CCCCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 4456789999999999988776666644 3466777764 33334444444432222111 11121110
Q ss_pred ---CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCcccc-----chhHHHHHHHh-----CCCCcEE
Q psy6275 137 ---NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER-----GYVWEETLILL-----SDNVRFV 198 (391)
Q Consensus 137 ---~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~-----~~~~~~i~~~~-----~~~~~~i 198 (391)
-.+.++.| .|++.+...+.+-......++++|||=.+.+..... ...+..+.+.+ ..++.++
T Consensus 280 ~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi 359 (448)
T PRK05748 280 MGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVI 359 (448)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 01223443 244544443322111112689999999998842211 12233343333 2457788
Q ss_pred EEcccC
Q psy6275 199 FLSATI 204 (391)
Q Consensus 199 ~~SAT~ 204 (391)
++|-.-
T Consensus 360 ~lsQln 365 (448)
T PRK05748 360 ALSQLS 365 (448)
T ss_pred EecccC
Confidence 777654
No 416
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.70 E-value=0.1 Score=47.63 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=31.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.|.-+++.|++|+|||...+..+.+.+.++.+++|+.-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45678999999999999887777777777889999873
No 417
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.69 E-value=0.34 Score=43.33 Aligned_cols=47 Identities=28% Similarity=0.392 Sum_probs=32.0
Q ss_pred HHhcCC-cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q psy6275 68 CIENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQ 115 (391)
Q Consensus 68 ~i~~~~-~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q 115 (391)
.+..++ -+.++|+-|||||...- ++...+..+..++++.|...+..+
T Consensus 46 ~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~d~~~~v~i~~~~~s~~ 93 (269)
T COG3267 46 AIADGQGILAVTGEVGSGKTVLRR-ALLASLNEDQVAVVVIDKPTLSDA 93 (269)
T ss_pred HHhcCCceEEEEecCCCchhHHHH-HHHHhcCCCceEEEEecCcchhHH
Confidence 345555 68899999999999876 666666666666655555444433
No 418
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.67 E-value=0.41 Score=47.23 Aligned_cols=132 Identities=21% Similarity=0.197 Sum_probs=67.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~--------- 136 (391)
..|.-+++.|+||+|||...+-.+.+.. ..+..++++.. ..-..|+..++......+. +..|....
T Consensus 193 ~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~Sl-Em~~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a 271 (434)
T TIGR00665 193 QPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSL-EMSAEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSA 271 (434)
T ss_pred CCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHH
Confidence 4566789999999999988766666544 34667777753 2233333333333322111 11111110
Q ss_pred ---CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCcccc----chhHHHHHHHh-----CCCCcEEE
Q psy6275 137 ---NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER----GYVWEETLILL-----SDNVRFVF 199 (391)
Q Consensus 137 ---~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~----~~~~~~i~~~~-----~~~~~~i~ 199 (391)
-.+..+.| .|.+.+...+..-... ..++++|||=.+.+..... ...+..+.+.+ ..++.+++
T Consensus 272 ~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~~i~vi~ 350 (434)
T TIGR00665 272 AGKLSEAPLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKELNVPVIA 350 (434)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 01123333 2445554433321111 2489999999998743221 12233333333 24677777
Q ss_pred Eccc
Q psy6275 200 LSAT 203 (391)
Q Consensus 200 ~SAT 203 (391)
+|-.
T Consensus 351 lsql 354 (434)
T TIGR00665 351 LSQL 354 (434)
T ss_pred Eecc
Confidence 7754
No 419
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=93.66 E-value=0.068 Score=52.27 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=35.7
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~ 116 (391)
...+++++.|+||+|||......+...+..+.+++|+-|..++....
T Consensus 40 ~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~~~ 86 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSKF 86 (410)
T ss_pred hhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhHhh
Confidence 44679999999999999875333444455678999999998876554
No 420
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.65 E-value=0.42 Score=51.34 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=18.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~ 95 (391)
..|.++.||+|+|||...-..+..
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999886544333
No 421
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.61 E-value=0.17 Score=51.22 Aligned_cols=21 Identities=14% Similarity=0.332 Sum_probs=18.3
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+.+.++||+|||||+..
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLL 378 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 467899999999999999864
No 422
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.60 E-value=0.21 Score=46.62 Aligned_cols=67 Identities=27% Similarity=0.332 Sum_probs=49.9
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS--QRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT 135 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~--~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~ 135 (391)
-++-|..=+.++.+..-++..||-|+|||..+.......+..+ .+++..=|-. +.+.+.+++-|+..
T Consensus 129 kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRPaV-----------EAGEklGfLPGdl~ 197 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRPAV-----------EAGEKLGFLPGDLR 197 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCcch-----------hcCcccCcCCCchh
Confidence 7899999999999988899999999999998877777777554 4666655622 22335566666655
No 423
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.57 E-value=0.21 Score=50.95 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=18.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
..+|++||.|+|||.++.+.+-..
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc
Confidence 358899999999999876655443
No 424
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.54 E-value=0.14 Score=48.70 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=39.4
Q ss_pred CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 58 LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 58 ~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
+++.+.+.+..+ ..+.+++++|+||+|||... ..++..+....+++++--+.||.
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll-~al~~~i~~~~riv~iEd~~El~ 218 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLL-SALLALVAPDERIVLVEDAAELR 218 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHH-HHHHccCCCCCcEEEECCcceec
Confidence 556666666654 56789999999999999764 44455556667788877777763
No 425
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=93.52 E-value=0.8 Score=49.44 Aligned_cols=78 Identities=17% Similarity=0.194 Sum_probs=67.4
Q ss_pred HHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCc
Q psy6275 92 AIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGS 158 (391)
Q Consensus 92 ~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~ 158 (391)
++++.+.+++++.|+.|..+-..++...++++.. ++++.||.+.. +.+.+|+|||. +-+..
T Consensus 795 AI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT------IIEtG 868 (1139)
T COG1197 795 AILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT------IIETG 868 (1139)
T ss_pred HHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee------eeecC
Confidence 4555556799999999999999999999999998 88999998773 56789999998 55667
Q ss_pred cccCccceEEEeccccc
Q psy6275 159 EITREVGWVIFDEIHYM 175 (391)
Q Consensus 159 ~~l~~~~~lViDE~h~~ 175 (391)
.++.+...+||+-||++
T Consensus 869 IDIPnANTiIIe~AD~f 885 (1139)
T COG1197 869 IDIPNANTIIIERADKF 885 (1139)
T ss_pred cCCCCCceEEEeccccc
Confidence 77889999999999987
No 426
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.50 E-value=0.12 Score=45.23 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=31.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
.|.-+.+.||+|+|||...+..+.+....+.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 356789999999999998877776666677888888664
No 427
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.50 E-value=0.13 Score=51.32 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=33.7
Q ss_pred CCccCCCCCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEE
Q psy6275 50 PAREYPFVLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYT 106 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl 106 (391)
.+..+| +.+-|.+.+..+.. +.-++++||||||||+.. ..++..+.. +..++.+
T Consensus 220 ~l~~Lg--~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~~~~~~iiTi 276 (486)
T TIGR02533 220 DLETLG--MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLNTPERNILTV 276 (486)
T ss_pred CHHHcC--CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccCCCCCcEEEE
Confidence 344444 46777777776543 235789999999999875 444555543 3344444
No 428
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.47 E-value=0.15 Score=47.80 Aligned_cols=89 Identities=20% Similarity=0.173 Sum_probs=56.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEc---HH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMT---TE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~T---p~ 148 (391)
|+-+.+.||+|+|||...+..+.+....+.+++|+.+...+-.+....+ .-+. .++++.. .+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~l---Gvd~------------~~l~v~~p~~~e 119 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKL---GVDL------------DNLLISQPDTGE 119 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHc---CCCH------------HHheecCCCCHH
Confidence 4678899999999999888777777778899999988776665433222 1111 1233333 34
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.++..+..- ..-..++++|+|=+-.+.
T Consensus 120 q~l~i~~~l-i~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 120 QALEIADSL-VRSGAVDLIVVDSVAALV 146 (325)
T ss_pred HHHHHHHHH-HhccCCCEEEEcchHhhc
Confidence 444433221 111368999999977553
No 429
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.46 E-value=0.22 Score=45.47 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=26.0
Q ss_pred CcHHHHHHHH----HHhcCCcEEEEecCCcchHHHHHHHH
Q psy6275 58 LDPFQKEAIL----CIENNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 58 ~~~~Q~~~i~----~i~~~~~~li~apTGsGKT~~~~~~~ 93 (391)
.++..++... .+..++++++.||+|+|||..+....
T Consensus 3 ~t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la 42 (262)
T TIGR02640 3 ETDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVA 42 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHH
Confidence 3455555444 45678999999999999999865443
No 430
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.46 E-value=0.33 Score=47.25 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=18.0
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
.++++||+|+|||.++...+-..
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999876655443
No 431
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.46 E-value=0.18 Score=48.39 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=24.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTT 107 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~ 107 (391)
.+..++++||||||||+.. ..++..+. .+.+++.+-
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~~~~~~~IvtiE 186 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGETYPDRKIVTYE 186 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHhcCCCceEEEEe
Confidence 5667999999999999874 44555543 234566553
No 432
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.45 E-value=0.17 Score=51.62 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=17.2
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
.++++||.|+|||.++...+-.
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3689999999999987554433
No 433
>PHA02542 41 41 helicase; Provisional
Probab=93.42 E-value=0.54 Score=46.75 Aligned_cols=36 Identities=22% Similarity=0.231 Sum_probs=28.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
|.-+++.|+||.|||..++-.+.+....+..|+++.
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 456889999999999988777666666677787774
No 434
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.38 E-value=0.21 Score=44.39 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=40.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+..+++.|++|+|||...+..+...+.++.+++|+.- .+-..++.+.+..+..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~-e~~~~~l~~~~~~~~~ 68 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL-EEREERILGYAKSKGW 68 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHcCC
Confidence 35678999999999998877777777777888888855 3445666666666543
No 435
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.38 E-value=0.21 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=18.6
Q ss_pred CcEEEEecCCcchHHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
..+++.||.|+|||..+...+-..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHh
Confidence 457999999999999876555443
No 436
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.36 E-value=0.42 Score=46.40 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=17.0
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.+++.||+|+|||..+-..
T Consensus 165 p~gvLL~GppGtGKT~lAkai 185 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAV 185 (389)
T ss_pred CCceEEECCCCCChHHHHHHH
Confidence 357999999999999875443
No 437
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.28 E-value=0.13 Score=45.57 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=29.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
|.-+++.|++|+|||...+..+......+.+++|+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 456889999999999988777777667788999983
No 438
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.26 E-value=0.094 Score=53.55 Aligned_cols=56 Identities=20% Similarity=-0.069 Sum_probs=44.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
.+++++.||||||||..+++|.+.. -+..++|+-|.-|+...+....++.+..|.+
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~--~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~v 213 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLF--WEDSVVVHDIKLENYELTSGWREKQGQKVFV 213 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHh--CCCCEEEEeCcHHHHHHHHHHHHHCCCeEEE
Confidence 4579999999999999998886554 3678999999999998888777665445544
No 439
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.25 E-value=0.18 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=17.9
Q ss_pred CcEEEEecCCcchHHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~ 95 (391)
+.++++||.|+|||.++-..+..
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34788999999999987655443
No 440
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=93.24 E-value=0.28 Score=46.84 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=16.0
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
.+++.||+|+|||..+....
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la 57 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFA 57 (355)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998764443
No 441
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.22 E-value=0.39 Score=48.03 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=16.1
Q ss_pred CCcEEEEecCCcchHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~ 90 (391)
.+.+++.||+|+|||..+-
T Consensus 216 p~GILLyGPPGTGKT~LAK 234 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAK 234 (512)
T ss_pred CcceEEECCCCCcHHHHHH
Confidence 4679999999999998643
No 442
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.15 E-value=0.068 Score=49.20 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.6
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
.-|+++.||||||||+.+..
T Consensus 97 KSNILLiGPTGsGKTlLAqT 116 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQT 116 (408)
T ss_pred eccEEEECCCCCcHHHHHHH
Confidence 35799999999999987643
No 443
>PRK08760 replicative DNA helicase; Provisional
Probab=93.11 E-value=0.72 Score=46.01 Aligned_cols=132 Identities=20% Similarity=0.185 Sum_probs=68.9
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~--------- 136 (391)
..|.-+++.|.||+|||...+-.+.... ..+..|+|+.. ..-..|+..++......+. +..|....
T Consensus 227 ~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a 305 (476)
T PRK08760 227 QPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSM-EMSASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGA 305 (476)
T ss_pred CCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEec-cCCHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHH
Confidence 4566789999999999988776665543 34667777743 2223455555444332111 11121110
Q ss_pred ---CCCCCEEEE-----cHHHHHHHHhcCccccCccceEEEecccccCccc----cchhHHHHHHHhC-----CCCcEEE
Q psy6275 137 ---NPSSSCLIM-----TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE----RGYVWEETLILLS-----DNVRFVF 199 (391)
Q Consensus 137 ---~~~~~I~v~-----Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~----~~~~~~~i~~~~~-----~~~~~i~ 199 (391)
-.+..+.|- |++.+...+.+-.. -..+++||||=.+.|...+ +...+..+.+.+. .++.+++
T Consensus 306 ~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~ 384 (476)
T PRK08760 306 IKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELNVPVIA 384 (476)
T ss_pred HHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 011234332 45555443322111 1358999999999884222 2222334443332 3577777
Q ss_pred Eccc
Q psy6275 200 LSAT 203 (391)
Q Consensus 200 ~SAT 203 (391)
+|-.
T Consensus 385 lsQL 388 (476)
T PRK08760 385 LSQL 388 (476)
T ss_pred eecc
Confidence 7644
No 444
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.10 E-value=0.44 Score=50.45 Aligned_cols=44 Identities=20% Similarity=0.160 Sum_probs=26.9
Q ss_pred cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC
Q psy6275 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS 192 (391)
Q Consensus 146 Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~ 192 (391)
.|+.+...+..... .-.++++||+|.+.....+.....++..+.
T Consensus 402 ~~G~~~~~l~~~~~---~~~villDEidk~~~~~~g~~~~aLlevld 445 (784)
T PRK10787 402 MPGKLIQKMAKVGV---KNPLFLLDEIDKMSSDMRGDPASALLEVLD 445 (784)
T ss_pred CCcHHHHHHHhcCC---CCCEEEEEChhhcccccCCCHHHHHHHHhc
Confidence 46777666654332 224799999999876544444455555543
No 445
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.04 E-value=0.62 Score=49.89 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=19.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~ 96 (391)
..|.++.||+|+|||..+-..+...
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999875544443
No 446
>KOG0741|consensus
Probab=92.98 E-value=0.21 Score=49.13 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=15.4
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
+-+++.||+|+|||+.+
T Consensus 257 KGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIA 273 (744)
T ss_pred eeEEEECCCCCChhHHH
Confidence 56899999999999976
No 447
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.94 E-value=0.25 Score=51.24 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=17.2
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
-++++||.|+|||.++...+..
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~ 63 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANA 63 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999987555433
No 448
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=92.92 E-value=0.87 Score=41.73 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=15.3
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
+++++.||+|+|||+.+
T Consensus 112 ~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLL 128 (270)
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 68999999999999864
No 449
>PRK08840 replicative DNA helicase; Provisional
Probab=92.92 E-value=0.83 Score=45.36 Aligned_cols=134 Identities=21% Similarity=0.205 Sum_probs=67.4
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCcc---------
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVT--------- 135 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~--------- 135 (391)
+..|.-+++.|.||.|||..++-.+.... ..+..++++..- --..|+..++-.....+. +..|...
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~ 292 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLE-MPAEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISS 292 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHH
Confidence 45567789999999999987765555543 446678777532 223444444333222110 1111111
Q ss_pred ----cCCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCccc----cchhHHHHHHHh-----CCCCcE
Q psy6275 136 ----INPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE----RGYVWEETLILL-----SDNVRF 197 (391)
Q Consensus 136 ----~~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~----~~~~~~~i~~~~-----~~~~~~ 197 (391)
...+.++.| .|...+.....+-......+++||||=.|.|...+ +...+..+.+.+ ..++.+
T Consensus 293 a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ipV 372 (464)
T PRK08840 293 TMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPV 372 (464)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHHhCCeE
Confidence 001223433 23344433222211111258999999999885222 112233343333 246778
Q ss_pred EEEccc
Q psy6275 198 VFLSAT 203 (391)
Q Consensus 198 i~~SAT 203 (391)
+++|--
T Consensus 373 i~LsQL 378 (464)
T PRK08840 373 VALSQL 378 (464)
T ss_pred EEEEec
Confidence 887743
No 450
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.90 E-value=0.39 Score=49.24 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=16.8
Q ss_pred cEEEEecCCcchHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~ 94 (391)
.++++||.|+|||.++...+-
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 468999999999998755543
No 451
>CHL00176 ftsH cell division protein; Validated
Probab=92.87 E-value=0.49 Score=48.86 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=16.6
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+.+++.||+|+|||..+-..
T Consensus 217 ~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46999999999999876444
No 452
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=92.84 E-value=0.46 Score=47.76 Aligned_cols=22 Identities=27% Similarity=0.196 Sum_probs=17.3
Q ss_pred EEEEecCCcchHHHHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~ 96 (391)
.+++||.|+|||.++...+-..
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5899999999998876555443
No 453
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=92.76 E-value=0.29 Score=50.04 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=43.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccH--HHHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK--ALSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~--~L~~q~~~~~~~~~~ 125 (391)
...+.++.|+||+|||......+.+.+..+..++++=|-. ++...++...+....
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~li~q~i~~g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAELLITQDIRRGDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 3568999999999999998888888888888999999976 566666665555544
No 454
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.75 E-value=0.52 Score=44.26 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHH----hcCC---cEEEEecCCcchHHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCI----ENNQ---SVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 58 ~~~~Q~~~i~~i----~~~~---~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+.|||...+..+ .+++ -.++.||.|.||+..+...+...+
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~ll 50 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALL 50 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHc
Confidence 457777777654 3443 589999999999987655554444
No 455
>PHA00012 I assembly protein
Probab=92.74 E-value=1.1 Score=41.92 Aligned_cols=29 Identities=34% Similarity=0.357 Sum_probs=24.0
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeE
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRV 103 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~v 103 (391)
.++.|-+|+|||+.+..-+...+.+|.++
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~Gr~V 32 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVKGCIV 32 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHcCCEE
Confidence 57899999999999888888888777643
No 456
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.74 E-value=0.2 Score=50.11 Aligned_cols=104 Identities=13% Similarity=0.076 Sum_probs=63.8
Q ss_pred HHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCC
Q psy6275 64 EAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP 138 (391)
Q Consensus 64 ~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~ 138 (391)
..++.++. |..+++.||+|+|||+..+..+...+.++-+++|+. ..+-..|+..+...+.-+..- .-.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~~~~------~~~ 322 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGIDFEE------MEQ 322 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCChHH------Hhh
Confidence 34555543 467899999999999988888877777888999886 566677777777665432110 000
Q ss_pred CCCEEE-------EcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 139 SSSCLI-------MTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 139 ~~~I~v-------~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+..+.+ ..++.++..+..... -.+.+.+|||=...+
T Consensus 323 ~g~l~~~~~~p~~~~~~~~~~~i~~~i~-~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 323 QGLLKIICAYPESAGLEDHLQIIKSEIA-DFKPARIAIDSLSAL 365 (484)
T ss_pred CCcEEEEEcccccCChHHHHHHHHHHHH-HcCCCEEEEcCHHHH
Confidence 111211 123444433332211 125679999998865
No 457
>KOG0738|consensus
Probab=92.68 E-value=0.41 Score=45.40 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=41.8
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~ 152 (391)
+.+++.||+|+|||+.+-..+-+ .+...+-+....|+..+- | -.+++.+
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATE----c~tTFFNVSsstltSKwR--------------G-------------eSEKlvR 294 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATE----CGTTFFNVSSSTLTSKWR--------------G-------------ESEKLVR 294 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHh----hcCeEEEechhhhhhhhc--------------c-------------chHHHHH
Confidence 57999999999999865332222 123344444444433221 1 1355555
Q ss_pred HHhcCccccCccceEEEecccccCc
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
++..-.. +-.-..|.|||+|.+..
T Consensus 295 lLFemAR-fyAPStIFiDEIDslcs 318 (491)
T KOG0738|consen 295 LLFEMAR-FYAPSTIFIDEIDSLCS 318 (491)
T ss_pred HHHHHHH-HhCCceeehhhHHHHHh
Confidence 5443211 23567999999998853
No 458
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.61 E-value=0.17 Score=44.12 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=23.8
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKA 111 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~ 111 (391)
-++++||||||||+... .++..+.. +.+++.+--..+
T Consensus 3 lilI~GptGSGKTTll~-~ll~~~~~~~~~~i~t~e~~~E 41 (198)
T cd01131 3 LVLVTGPTGSGKSTTLA-AMIDYINKNKTHHILTIEDPIE 41 (198)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHhhhcCCcEEEEEcCCcc
Confidence 47899999999998753 34444432 356666644334
No 459
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.45 E-value=0.081 Score=47.86 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=20.8
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
+..|+.+++.||.|+|||+.. -.+.+.+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl-r~I~n~l 40 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL-QSIANAI 40 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH-HHHHhcc
Confidence 457899999999999999754 3344443
No 460
>PRK13695 putative NTPase; Provisional
Probab=92.42 E-value=4.6 Score=34.15 Aligned_cols=20 Identities=15% Similarity=0.187 Sum_probs=16.1
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
.+++.|++|+|||+.....+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999765433
No 461
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=92.41 E-value=0.16 Score=52.51 Aligned_cols=55 Identities=24% Similarity=0.038 Sum_probs=42.4
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
.+++++.||||||||..+++|-+-. .+..++|+-|.-|+...+....++.+..|-
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~--~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~ 193 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLT--FKGSVIALDVKGELFELTSRARKASGDAVF 193 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhc--CCCCEEEEeCCchHHHHHHHHHHhCCCEEE
Confidence 4589999999999999998886443 367899999999998887665555433343
No 462
>PRK08006 replicative DNA helicase; Provisional
Probab=92.40 E-value=1.2 Score=44.34 Aligned_cols=134 Identities=20% Similarity=0.177 Sum_probs=69.7
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCcc---------
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVT--------- 135 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~--------- 135 (391)
+..|.-+++.|.||.|||..++-.+.+.. ..+..|+|+..- --..|+..++-.....+. +..|...
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~ 299 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISG 299 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHH
Confidence 34567789999999999988766655543 456678777532 223344433333222111 1111111
Q ss_pred ----cCCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCccc----cchhHHHHHHHh-----CCCCcE
Q psy6275 136 ----INPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE----RGYVWEETLILL-----SDNVRF 197 (391)
Q Consensus 136 ----~~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~----~~~~~~~i~~~~-----~~~~~~ 197 (391)
...+.++.| .|+..+.....+-......+++||||=.|.+...+ +...+..+.+.+ ..++.+
T Consensus 300 a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel~ipV 379 (471)
T PRK08006 300 TMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPV 379 (471)
T ss_pred HHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHhCCeE
Confidence 002234444 24444443332211111268999999999884221 222244444433 246778
Q ss_pred EEEccc
Q psy6275 198 VFLSAT 203 (391)
Q Consensus 198 i~~SAT 203 (391)
+++|-.
T Consensus 380 i~LsQL 385 (471)
T PRK08006 380 VALSQL 385 (471)
T ss_pred EEEEec
Confidence 888744
No 463
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.39 E-value=0.22 Score=42.23 Aligned_cols=83 Identities=22% Similarity=0.202 Sum_probs=50.9
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNML 154 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l 154 (391)
+++.|++|||||..+...+.. .+.+++|++-.+.+-.++.+++.+.-. ..+..=..+-.|..+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~----------~R~~~w~t~E~~~~l~~~l 68 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRK----------RRPAHWRTIETPRDLVSAL 68 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHH----------hCCCCceEeecHHHHHHHH
Confidence 589999999999876655433 467899998888777766666554211 0111123344555555555
Q ss_pred hcCccccCccceEEEecccc
Q psy6275 155 YRGSEITREVGWVIFDEIHY 174 (391)
Q Consensus 155 ~~~~~~l~~~~~lViDE~h~ 174 (391)
.... .-+.+++|=...
T Consensus 69 ~~~~----~~~~VLIDclt~ 84 (169)
T cd00544 69 KELD----PGDVVLIDCLTL 84 (169)
T ss_pred HhcC----CCCEEEEEcHhH
Confidence 3321 345677776654
No 464
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.38 E-value=0.8 Score=48.42 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.3
Q ss_pred CCcEEEEecCCcchHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~ 90 (391)
++.+++.||+|+|||..+-
T Consensus 212 ~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CceEEEECCCCCChHHHHH
Confidence 4779999999999998753
No 465
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=92.32 E-value=0.12 Score=35.73 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=15.6
Q ss_pred CCcEEEEecCCcchHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~ 89 (391)
+...++.||+|+|||..+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457999999999999874
No 466
>KOG1001|consensus
Probab=92.28 E-value=0.93 Score=46.94 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=78.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHH-Hh--------cCCeEEEEcccHHHHHHHHHHHHHhcc----cceeeeC-Ccc--cC
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS-LK--------QSQRVIYTTPIKALSNQKYREFEEQFK----DVGLITG-DVT--IN 137 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~-l~--------~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g-~~~--~~ 137 (391)
-.|+.-..|-|||...+..++.. .. .....|+++| -++..|+...+.+..+ .+.+.+| ... ..
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp-~s~~~qW~~elek~~~~~~l~v~v~~gr~kd~~el 232 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCP-TSLLTQWKTELEKVTEEDKLSIYVYHGRTKDKSEL 232 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecc-hHHHHHHHHHHhccCCccceEEEEecccccccchh
Confidence 46888889999998765544432 21 2345677767 5666788888855444 4555666 111 12
Q ss_pred CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCCh--HHHHHHhc
Q psy6275 138 PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 138 ~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
.+.+|+++||+.+.. ....--..-.+|+||+|.+...... .......+....+. .+|+|+-.. +++..+++
T Consensus 233 ~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~tq--~~~a~~~L~a~~RW-cLtgtPiqn~~~~lysl~~ 305 (674)
T KOG1001|consen 233 NSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDTQ--IFKAVCQLDAKYRW-CLTGTPIQNNLDELYSLFK 305 (674)
T ss_pred cCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcchH--hhhhheeeccceee-eecCChhhhhHHHHHHHHH
Confidence 356799999998863 1111124557999999998654222 11222223333334 558887543 55655554
No 467
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.28 E-value=1.6 Score=41.50 Aligned_cols=97 Identities=18% Similarity=0.153 Sum_probs=43.0
Q ss_pred EEEecCCcchHHHHHHHHHHH-HhcCC-eEEEEcccHHHHHHH-HH---HHHHhccc---ceee-eCCcc--cCCCCCEE
Q psy6275 76 LVSAHTSAGKTVVAEYAIASS-LKQSQ-RVIYTTPIKALSNQK-YR---EFEEQFKD---VGLI-TGDVT--INPSSSCL 143 (391)
Q Consensus 76 li~apTGsGKT~~~~~~~~~~-l~~~~-~vlvl~P~~~L~~q~-~~---~~~~~~~~---v~~~-~g~~~--~~~~~~I~ 143 (391)
++.++.|+|||......++.. +..+. +.++++|+..-+... .. ........ +... ..+.. ......|.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nG~~i~ 80 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKIILPNGSRIQ 80 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEEETTS-EEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEEecCceEEE
Confidence 478899999999876555444 34443 455555665554442 22 23333322 1111 01111 12233455
Q ss_pred EEcHHH---HHHHHhcCccccCccceEEEecccccCcc
Q psy6275 144 IMTTEI---LRNMLYRGSEITREVGWVIFDEIHYMRDK 178 (391)
Q Consensus 144 v~Tp~~---l~~~l~~~~~~l~~~~~lViDE~h~~~~~ 178 (391)
+.+.+. ...+. + ..++++++||+-.+.+.
T Consensus 81 ~~~~~~~~~~~~~~--G----~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 81 FRGADSPDSGDNIR--G----FEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp EES-----SHHHHH--T----S--SEEEEESGGGSTTH
T ss_pred Eecccccccccccc--c----cccceeeeeecccCchH
Confidence 555321 11111 1 37889999999877544
No 468
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=92.18 E-value=0.21 Score=51.19 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=43.6
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc-cccee
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF-KDVGL 129 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~-~~v~~ 129 (391)
..++++.||||||||..+.+|- .+..+..++|+-|..|+...+....++.+ .+|-+
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPn--LL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~v 267 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPT--ALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIV 267 (623)
T ss_pred CceEEEEeCCCCCccceeehhh--hhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEE
Confidence 3689999999999999998885 44457889999999999888776555554 34444
No 469
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.13 E-value=0.19 Score=51.71 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=43.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
..++++.||||+|||..+.+|.+ +..++.++|+-|..|+...+....++...+|-+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnL--L~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~v 279 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTA--LKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIV 279 (641)
T ss_pred CceEEEEeCCCCCccceEehhhh--hcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999988853 345778999999999988776655554434444
No 470
>PRK05636 replicative DNA helicase; Provisional
Probab=92.13 E-value=0.96 Score=45.41 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=26.1
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEE
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYT 106 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl 106 (391)
..|.-+++.|.||+|||...+-.+... +..+..++++
T Consensus 263 ~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~f 300 (505)
T PRK05636 263 RGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIF 300 (505)
T ss_pred CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 345667899999999998766555443 3446677776
No 471
>PRK09165 replicative DNA helicase; Provisional
Probab=92.10 E-value=1.2 Score=44.82 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=55.7
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHh---------------cCCeEEEEcccHHHHHHHHHHHHHhcccce---eee
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLK---------------QSQRVIYTTPIKALSNQKYREFEEQFKDVG---LIT 131 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~---------------~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~ 131 (391)
..|.-+++.|+||+|||..++-.+.+... .+..|+|+. ...-..|+..++......+. +..
T Consensus 215 ~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~~s~v~~~~i~~ 293 (497)
T PRK09165 215 HPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSEQSEISSSKIRR 293 (497)
T ss_pred CCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHHhcCCCHHHHhc
Confidence 34566899999999999877655544432 245677774 33334555555433322111 111
Q ss_pred CCccc------------CCCCCEEE-----EcHHHHHHHHhcCccccCccceEEEecccccCc
Q psy6275 132 GDVTI------------NPSSSCLI-----MTTEILRNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 132 g~~~~------------~~~~~I~v-----~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
|.... -.+.++.| .|++.+...+.+-.. -..+++||||=.|.+..
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccC
Confidence 21110 01123333 244554443332111 12589999999998753
No 472
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.09 E-value=0.56 Score=44.44 Aligned_cols=40 Identities=10% Similarity=0.134 Sum_probs=28.3
Q ss_pred CcHHHHHHHHHH----hcCC---cEEEEecCCcchHHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCI----ENNQ---SVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 58 ~~~~Q~~~i~~i----~~~~---~~li~apTGsGKT~~~~~~~~~~l 97 (391)
++|||...+..+ .+++ -.++.||.|.||+..+...+...+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~Ll 49 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLM 49 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHc
Confidence 457788777755 2343 588999999999987765554443
No 473
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.09 E-value=0.24 Score=47.17 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=27.7
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKAL 112 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L 112 (391)
.+..++++||||||||+.. ..++..+.. +.+++.+--..++
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKNAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcCCCCEEEEEcCChhh
Confidence 4678999999999999875 344444443 4566666544444
No 474
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=92.03 E-value=0.56 Score=40.10 Aligned_cols=42 Identities=12% Similarity=0.237 Sum_probs=26.2
Q ss_pred CccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEccc
Q psy6275 162 REVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSAT 203 (391)
Q Consensus 162 ~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT 203 (391)
.+.+++++||...-+|......+...+..+ ..+.++++.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 467899999999877654444444444443 333666666544
No 475
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=91.95 E-value=0.92 Score=45.58 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.5
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+.+++.||+|+|||..+-..
T Consensus 89 ~giLL~GppGtGKT~la~al 108 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAV 108 (495)
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 57999999999999875433
No 476
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=91.94 E-value=0.45 Score=49.60 Aligned_cols=66 Identities=24% Similarity=0.273 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
+++-|.+|+... ...++|.|+.|||||.+...=+.+.+.. ..+++.+.=|+..+.++..++....+
T Consensus 3 Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 3 LNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 789999999764 6678999999999999876655555544 34799999999999999999888875
No 477
>PF13479 AAA_24: AAA domain
Probab=91.93 E-value=0.25 Score=43.61 Aligned_cols=78 Identities=14% Similarity=0.201 Sum_probs=47.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
+-.++|.|++|+|||..+... ++.++|..-..... +. .......+-|.+++.+.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~-----~~-------------~~~~~~~i~i~s~~~~~ 56 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDS-----LK-------------FLDDGDVIPITSWEDFL 56 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccc-----hh-------------hhcCCCeeCcCCHHHHH
Confidence 446899999999999754322 56777644222100 00 00012234455888888
Q ss_pred HHHhcCccccCccceEEEeccccc
Q psy6275 152 NMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+.+..-......++.||||-+..+
T Consensus 57 ~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 57 EALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred HHHHHHHhccCCCCEEEEECHHHH
Confidence 866543333568999999999876
No 478
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=91.91 E-value=0.31 Score=44.67 Aligned_cols=90 Identities=13% Similarity=0.200 Sum_probs=57.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
|.-+=+.||.|||||...+..+......+.+++|+--..+|-.+-...+..-. ..++++..|....
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~--------------~d~l~v~~~~~~e 125 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL--------------LDNLLVSQPDTGE 125 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh--------------hcceeEecCCCHH
Confidence 34456999999999999988888888888899999776666554444433321 2346666654333
Q ss_pred HHH---hcC-ccccCccceEEEeccccc
Q psy6275 152 NML---YRG-SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 152 ~~l---~~~-~~~l~~~~~lViDE~h~~ 175 (391)
+.+ ... ....+.++++|+|=+=.+
T Consensus 126 ~q~~i~~~~~~~~~~~i~LvVVDSvaa~ 153 (279)
T COG0468 126 QQLEIAEKLARSGAEKIDLLVVDSVAAL 153 (279)
T ss_pred HHHHHHHHHHHhccCCCCEEEEecCccc
Confidence 211 111 111116999999977654
No 479
>KOG0990|consensus
Probab=91.90 E-value=0.31 Score=45.02 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=24.6
Q ss_pred ccceEEEecccccCccccchhHHHHHHHhCCCCcEEEE
Q psy6275 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFL 200 (391)
Q Consensus 163 ~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~ 200 (391)
.++++|+||||.|... -...++.++.....+.+++..
T Consensus 131 ~fKlvILDEADaMT~~-AQnALRRviek~t~n~rF~ii 167 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-AQNALRRVIEKYTANTRFATI 167 (360)
T ss_pred ceeEEEecchhHhhHH-HHHHHHHHHHHhccceEEEEe
Confidence 7899999999988432 133455566666666666643
No 480
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=91.88 E-value=0.47 Score=43.17 Aligned_cols=104 Identities=13% Similarity=0.256 Sum_probs=52.1
Q ss_pred HHHHHhcC-----CcEEEEecCCcchHHHHHHHHHHH-Hh-----cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCC
Q psy6275 65 AILCIENN-----QSVLVSAHTSAGKTVVAEYAIASS-LK-----QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGD 133 (391)
Q Consensus 65 ~i~~i~~~-----~~~li~apTGsGKT~~~~~~~~~~-l~-----~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~ 133 (391)
.++.++.| .-+=++|++|+|||...+..++.. +. .+.+++|+.-....-.+-..++.+.++ . ..+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~-~---~~~ 101 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFG-L---DPE 101 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTT-S----HH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccc-c---ccc
Confidence 34555543 345699999999998765544443 22 257899996443322221222222111 0 000
Q ss_pred cccCCCCCEE---EEcHHHHHHHHhcCccc--cCccceEEEeccccc
Q psy6275 134 VTINPSSSCL---IMTTEILRNMLYRGSEI--TREVGWVIFDEIHYM 175 (391)
Q Consensus 134 ~~~~~~~~I~---v~Tp~~l~~~l~~~~~~--l~~~~~lViDE~h~~ 175 (391)
... .+|. +.+.+.+...+..-... -.++++||||-+-.+
T Consensus 102 ~~l---~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 102 EIL---DNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp HHH---HTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred hhh---hceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 000 1222 23445555444332111 147999999998765
No 481
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=91.86 E-value=0.5 Score=49.57 Aligned_cols=89 Identities=18% Similarity=0.138 Sum_probs=56.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH---H
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT---E 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp---~ 148 (391)
|.-+.+.||+|+|||...+..+......+.+++|+.....+....++ .+.-+. .++++..| +
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~---~lGvDl------------~~llv~~~~~~E 124 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAK---KLGVDT------------DSLLVSQPDTGE 124 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHH---HcCCCh------------hHeEEecCCCHH
Confidence 46688999999999998877777777788999999877766644322 221111 12233333 3
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.++..+.... .-..+++||||-+-.+.
T Consensus 125 ~~l~~i~~lv-~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 125 QALEIADMLI-RSGALDIVVIDSVAALV 151 (790)
T ss_pred HHHHHHHHHh-hcCCCeEEEEcchhhhc
Confidence 3333332211 11368999999988664
No 482
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.85 E-value=0.28 Score=41.56 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=24.3
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+++.|++|+|||......+......+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 578999999999987655555445566776654
No 483
>KOG1806|consensus
Probab=91.85 E-value=0.35 Score=50.99 Aligned_cols=68 Identities=25% Similarity=0.194 Sum_probs=55.2
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHH--HHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAE--YAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~--~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.+++-|.++|..-...+.+.+.||+|+|||-.+. +..+.+-....+.+|++.+..-.+|.++.+.+.-
T Consensus 738 ~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d 807 (1320)
T KOG1806|consen 738 KFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALD 807 (1320)
T ss_pred ccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcc
Confidence 5899999999887888899999999999998763 3344444567899999999888888888776653
No 484
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=91.83 E-value=0.67 Score=40.97 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.7
Q ss_pred cCC-cEEEEecCCcchHHHH
Q psy6275 71 NNQ-SVLVSAHTSAGKTVVA 89 (391)
Q Consensus 71 ~~~-~~li~apTGsGKT~~~ 89 (391)
++. |.++.||+|+|||+..
T Consensus 135 ~g~lntLiigpP~~GKTTlL 154 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLL 154 (308)
T ss_pred cCceeeEEecCCCCChHHHH
Confidence 444 5999999999999864
No 485
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.80 E-value=0.32 Score=48.66 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=40.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.|..+++.||+|+|||+.++..+.+.+.+ +-+++|+.- .+-..++.+.+..+..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~-eE~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF-EESPQDIIKNARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE-ecCHHHHHHHHHHcCC
Confidence 46789999999999999888777776665 678888864 4555666666666554
No 486
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.75 E-value=0.82 Score=47.04 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=16.0
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+-+++.||+|+|||.++-+.
T Consensus 111 ~illL~GP~GsGKTTl~~~l 130 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKIL 130 (637)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 34899999999999975443
No 487
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.72 E-value=0.11 Score=49.54 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=25.7
Q ss_pred HHHHHHHHHHh---cCCcEEEEecCCcchHHHHHH
Q psy6275 60 PFQKEAILCIE---NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 60 ~~Q~~~i~~i~---~~~~~li~apTGsGKT~~~~~ 91 (391)
++-.++|+.+. .|+..+|.||.|+|||.....
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~ 152 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQ 152 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHH
Confidence 56667787654 688999999999999987544
No 488
>PRK13764 ATPase; Provisional
Probab=91.69 E-value=0.3 Score=49.75 Aligned_cols=42 Identities=21% Similarity=0.361 Sum_probs=27.6
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEE-EEcccHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVI-YTTPIKAL 112 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vl-vl~P~~~L 112 (391)
..+++++++||||||||+.. .+++..+....+.+ .+--.+++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll-~AL~~~i~~~~riV~TiEDp~El 297 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA-QALAEFYADMGKIVKTMESPRDL 297 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHHhhCCCEEEEECCCccc
Confidence 45788999999999999864 44555554444544 44333444
No 489
>COG1485 Predicted ATPase [General function prediction only]
Probab=91.66 E-value=2.4 Score=39.97 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=76.2
Q ss_pred CCccCCCCCcHHHHHHHHHHh------------c-------------CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEE
Q psy6275 50 PAREYPFVLDPFQKEAILCIE------------N-------------NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVI 104 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i~------------~-------------~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vl 104 (391)
....-+|.+.+.|..++.++. . .+-+-+.|+-|.|||...-... +.+. ...-
T Consensus 18 ~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~~~~~l~~lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy-~~lp--~~~k 94 (367)
T COG1485 18 LVPAGTFQPDPAQPAAAAALDRLYDELVAPRSARKALGWLFGRDHGPVRGLYLWGGVGRGKTMLMDLFY-ESLP--GERK 94 (367)
T ss_pred hcccCCCCCChHHHHHHHHHHHHHHHhhcccccccccccccccCCCCCceEEEECCCCccHHHHHHHHH-hhCC--cccc
Confidence 334445667788887776441 1 1558899999999998643332 2221 1111
Q ss_pred EEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhH
Q psy6275 105 YTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVW 184 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~ 184 (391)
.-++..+-+.++.+++..+- |.. +.+ +....+ ...+.+++.+||.+- .|-+....+
T Consensus 95 ~R~HFh~FM~~vH~~l~~l~-------g~~------dpl---~~iA~~-------~~~~~~vLCfDEF~V-tDI~DAMiL 150 (367)
T COG1485 95 RRLHFHRFMARVHQRLHTLQ-------GQT------DPL---PPIADE-------LAAETRVLCFDEFEV-TDIADAMIL 150 (367)
T ss_pred ccccHHHHHHHHHHHHHHHc-------CCC------Ccc---HHHHHH-------HHhcCCEEEeeeeee-cChHHHHHH
Confidence 22366677777777776654 221 111 111111 234788999999984 333333344
Q ss_pred HHHHHH-hCCCCcEEEEcccCCCh
Q psy6275 185 EETLIL-LSDNVRFVFLSATIPNA 207 (391)
Q Consensus 185 ~~i~~~-~~~~~~~i~~SAT~~~~ 207 (391)
..++.. +..++.++..|-|.|+.
T Consensus 151 ~rL~~~Lf~~GV~lvaTSN~~P~~ 174 (367)
T COG1485 151 GRLLEALFARGVVLVATSNTAPDN 174 (367)
T ss_pred HHHHHHHHHCCcEEEEeCCCChHH
Confidence 445443 46788899999998753
No 490
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.65 E-value=0.54 Score=48.32 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=18.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~ 96 (391)
..+++||.|+|||.++...+-..
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999876555443
No 491
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=91.51 E-value=0.32 Score=46.22 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=16.8
Q ss_pred CcEEEEecCCcchHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~ 94 (391)
.-+++.||+|+|||+.+-..+-
T Consensus 149 lgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHH
Confidence 3478999999999997644443
No 492
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.51 E-value=3.7 Score=35.87 Aligned_cols=92 Identities=17% Similarity=0.157 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCc--EEEEecCCcc--hHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc
Q psy6275 61 FQKEAILCIENNQS--VLVSAHTSAG--KTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136 (391)
Q Consensus 61 ~Q~~~i~~i~~~~~--~li~apTGsG--KT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~ 136 (391)
-=.+.|.++..|.| +++.+..+.| =|...+..+.+ ..++|.++++|...-..+..+.+.... .
T Consensus 28 ~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr--~TgGR~vCIvp~~~~~~~~~~~l~~~~-----------~ 94 (218)
T PF07279_consen 28 GVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAAR--QTGGRHVCIVPDEQSLSEYKKALGEAG-----------L 94 (218)
T ss_pred CHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHH--hcCCeEEEEcCChhhHHHHHHHHhhcc-----------c
Confidence 34577888888766 5555544333 34444444433 369999999999877666555554432 1
Q ss_pred CCCCCEEEEc-HHHHHHHHhcCccccCccceEEEecc
Q psy6275 137 NPSSSCLIMT-TEILRNMLYRGSEITREVGWVIFDEI 172 (391)
Q Consensus 137 ~~~~~I~v~T-p~~l~~~l~~~~~~l~~~~~lViDE~ 172 (391)
...+.++++- ++.++. .+..+|++++|==
T Consensus 95 ~~~vEfvvg~~~e~~~~-------~~~~iDF~vVDc~ 124 (218)
T PF07279_consen 95 SDVVEFVVGEAPEEVMP-------GLKGIDFVVVDCK 124 (218)
T ss_pred cccceEEecCCHHHHHh-------hccCCCEEEEeCC
Confidence 2234566665 554443 2458999999843
No 493
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.46 E-value=1.2 Score=47.07 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.8
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.+++.||+|+|||..+-..
T Consensus 487 ~~giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 356899999999999875443
No 494
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.32 E-value=0.42 Score=45.75 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=20.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
.+..++++||||||||+.. ..++..+
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHH
Confidence 5778999999999999874 4455554
No 495
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=91.31 E-value=1 Score=40.47 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=24.8
Q ss_pred cEEEEecCCcchHHHHHHHHHHHH------------hcCCeEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSL------------KQSQRVIYTT 107 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l------------~~~~~vlvl~ 107 (391)
-.++.||.|+|||+..+..++... ..+.+|+|+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 468999999999997765554322 2456899987
No 496
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=91.23 E-value=0.22 Score=50.61 Aligned_cols=44 Identities=18% Similarity=0.242 Sum_probs=30.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSN 114 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~ 114 (391)
+.+++++.|+||||||......+-....++.+++|+-|.-+...
T Consensus 175 e~~h~li~G~tGsGKs~~i~~ll~~~~~~g~~~ii~D~~g~~~~ 218 (566)
T TIGR02759 175 ETQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGCTFTS 218 (566)
T ss_pred cccceEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCeeh
Confidence 46789999999999997643333333355778888888765543
No 497
>KOG1016|consensus
Probab=91.21 E-value=1.8 Score=44.62 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=36.2
Q ss_pred CCcEEEEecCCcchHHHHHHH---HHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA---IASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~---~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
|--+|+.-..|-|||+..+.. .+++ -....||+++|-..|-+ |..+|..+..
T Consensus 282 GFGCILAHSMGLGKTlQVisF~diflRh-T~AKtVL~ivPiNTlQN-WlsEfnmWiP 336 (1387)
T KOG1016|consen 282 GFGCILAHSMGLGKTLQVISFSDIFLRH-TKAKTVLVIVPINTLQN-WLSEFNMWIP 336 (1387)
T ss_pred CcceeeeeccccCceeEEeehhHHHhhc-CccceEEEEEehHHHHH-HHHHhhhhcC
Confidence 456888889999999854322 2232 23578999999888754 5667777765
No 498
>PRK06321 replicative DNA helicase; Provisional
Probab=91.17 E-value=0.81 Score=45.52 Aligned_cols=132 Identities=18% Similarity=0.163 Sum_probs=66.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---eeeCCccc---------
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG---LITGDVTI--------- 136 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~---~~~g~~~~--------- 136 (391)
..|.-+++.|.||.|||...+-.+.+.. ..+..++++.. .--..|+..++......+. +..|....
T Consensus 224 ~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSL-EMs~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a 302 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSL-EMTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSV 302 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEec-cCCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHH
Confidence 3456678999999999987766554433 44667777742 2223344444332222111 11121110
Q ss_pred ---CCCCCEEEE-----cHHHHHHHHhcCccccCccceEEEecccccCccc-------cchhHHHHHHHhC-----CCCc
Q psy6275 137 ---NPSSSCLIM-----TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE-------RGYVWEETLILLS-----DNVR 196 (391)
Q Consensus 137 ---~~~~~I~v~-----Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~-------~~~~~~~i~~~~~-----~~~~ 196 (391)
-.+..+.|- |.+.+...+.+-.. -..++++|||=.+.+...+ +...+..+.+.+. .++.
T Consensus 303 ~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~LK~lAkel~vp 381 (472)
T PRK06321 303 VNEMQEHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRMLKNLARELNIP 381 (472)
T ss_pred HHHHHcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHHHHHHHHhCCc
Confidence 012344443 44444433332111 1358999999999885321 1122333333332 3677
Q ss_pred EEEEccc
Q psy6275 197 FVFLSAT 203 (391)
Q Consensus 197 ~i~~SAT 203 (391)
++++|--
T Consensus 382 Vi~lsQL 388 (472)
T PRK06321 382 ILCLSQL 388 (472)
T ss_pred EEEEeec
Confidence 8887765
No 499
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.15 E-value=0.44 Score=37.47 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=15.5
Q ss_pred EEEEecCCcchHHHHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~ 93 (391)
+++.|++|||||+.+-...
T Consensus 2 I~I~G~~gsGKST~a~~La 20 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELA 20 (121)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998764444
No 500
>KOG0741|consensus
Probab=91.08 E-value=1.7 Score=43.10 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=21.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.+++.||+|||||..+.-.++. +.-+-+=++.|
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiSp 572 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALS--SDFPFVKIISP 572 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhh--cCCCeEEEeCh
Confidence 5899999999999755433322 22345555555
Done!