Query psy6275
Match_columns 391
No_of_seqs 242 out of 2130
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 22:14:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xgj_A ATP-dependent RNA helic 100.0 1E-42 3.5E-47 369.1 35.6 361 26-386 54-422 (1010)
2 3l9o_A ATP-dependent RNA helic 100.0 8E-43 2.7E-47 373.0 26.5 356 31-386 157-520 (1108)
3 4a4z_A Antiviral helicase SKI2 100.0 6.5E-40 2.2E-44 347.7 32.8 344 41-386 23-415 (997)
4 2db3_A ATP-dependent RNA helic 100.0 6.2E-39 2.1E-43 313.9 23.4 280 36-377 56-368 (434)
5 2j0s_A ATP-dependent RNA helic 100.0 6.3E-37 2.2E-41 297.5 18.8 283 35-377 36-344 (410)
6 2i4i_A ATP-dependent RNA helic 100.0 2.3E-36 8E-41 293.9 20.3 279 37-377 16-344 (417)
7 3eiq_A Eukaryotic initiation f 100.0 4.9E-36 1.7E-40 291.3 20.2 283 36-378 40-349 (414)
8 4f92_B U5 small nuclear ribonu 100.0 7.8E-36 2.7E-40 329.5 23.4 322 14-386 862-1229(1724)
9 4f92_B U5 small nuclear ribonu 100.0 2.1E-36 7.3E-41 333.9 18.5 282 55-386 76-394 (1724)
10 1s2m_A Putative ATP-dependent 100.0 7.4E-36 2.5E-40 288.9 18.7 281 36-377 21-326 (400)
11 3fht_A ATP-dependent RNA helic 100.0 1.6E-35 5.6E-40 287.3 19.9 285 36-381 25-344 (412)
12 3pey_A ATP-dependent RNA helic 100.0 1.7E-35 5.8E-40 285.3 19.2 282 35-377 4-311 (395)
13 1xti_A Probable ATP-dependent 100.0 3.2E-35 1.1E-39 283.4 19.6 280 36-377 8-318 (391)
14 3fmp_B ATP-dependent RNA helic 100.0 6.3E-36 2.2E-40 296.5 14.1 281 36-377 92-401 (479)
15 2va8_A SSO2462, SKI2-type heli 100.0 2.1E-34 7.3E-39 298.8 26.1 308 36-386 8-328 (715)
16 1hv8_A Putative ATP-dependent 100.0 8.5E-35 2.9E-39 277.6 20.2 278 36-377 6-306 (367)
17 2zj8_A DNA helicase, putative 100.0 1.3E-34 4.3E-39 300.5 21.7 285 37-377 2-338 (720)
18 2p6r_A Afuhel308 helicase; pro 100.0 9.3E-35 3.2E-39 300.8 19.9 287 37-377 2-340 (702)
19 1fuu_A Yeast initiation factor 100.0 1.4E-35 4.7E-40 286.1 12.8 283 36-378 21-328 (394)
20 2z0m_A 337AA long hypothetical 100.0 7.3E-34 2.5E-38 268.1 21.0 265 44-377 2-284 (337)
21 3sqw_A ATP-dependent RNA helic 100.0 1.6E-34 5.4E-39 292.8 16.8 279 43-378 28-360 (579)
22 3i5x_A ATP-dependent RNA helic 100.0 2.4E-34 8.2E-39 290.7 17.2 279 43-378 79-411 (563)
23 1oyw_A RECQ helicase, ATP-depe 100.0 6.1E-33 2.1E-37 277.0 17.8 279 37-383 3-316 (523)
24 3oiy_A Reverse gyrase helicase 100.0 3.2E-33 1.1E-37 271.9 15.2 252 54-377 18-319 (414)
25 3fho_A ATP-dependent RNA helic 100.0 2.1E-33 7E-38 280.0 14.0 280 38-378 121-426 (508)
26 2v1x_A ATP-dependent DNA helic 100.0 1.1E-32 3.7E-37 278.1 18.3 281 39-383 24-347 (591)
27 4ddu_A Reverse gyrase; topoiso 100.0 1.9E-31 6.5E-36 285.2 21.4 252 53-377 74-376 (1104)
28 3fe2_A Probable ATP-dependent 100.0 6.9E-32 2.4E-36 243.5 14.5 189 36-227 29-238 (242)
29 3iuy_A Probable ATP-dependent 100.0 1.3E-31 4.4E-36 239.4 14.0 186 37-225 20-227 (228)
30 1vec_A ATP-dependent RNA helic 100.0 6.1E-31 2.1E-35 231.2 17.7 185 37-223 4-204 (206)
31 1q0u_A Bstdead; DEAD protein, 100.0 2.7E-31 9.2E-36 235.9 14.4 191 36-228 4-213 (219)
32 1wrb_A DJVLGB; RNA helicase, D 100.0 1.7E-30 5.9E-35 235.8 20.0 189 36-227 23-240 (253)
33 3fmo_B ATP-dependent RNA helic 100.0 6.4E-31 2.2E-35 244.4 16.0 187 36-225 92-296 (300)
34 3bor_A Human initiation factor 100.0 4.1E-31 1.4E-35 237.6 14.1 187 36-225 30-233 (237)
35 2oxc_A Probable ATP-dependent 100.0 6.6E-31 2.3E-35 235.2 15.3 188 36-225 24-227 (230)
36 2gxq_A Heat resistant RNA depe 100.0 1.4E-30 4.7E-35 229.0 15.3 185 37-224 2-203 (207)
37 4a2p_A RIG-I, retinoic acid in 100.0 8.1E-30 2.8E-34 256.7 22.7 149 55-206 5-178 (556)
38 1qde_A EIF4A, translation init 100.0 1.8E-30 6.1E-35 231.3 15.5 188 36-226 14-216 (224)
39 2pl3_A Probable ATP-dependent 100.0 1.6E-30 5.4E-35 233.6 15.1 187 36-225 25-231 (236)
40 3ly5_A ATP-dependent RNA helic 100.0 1E-30 3.5E-35 238.6 13.5 170 43-212 61-251 (262)
41 3ber_A Probable ATP-dependent 100.0 3E-30 1E-34 233.6 15.5 187 36-225 43-246 (249)
42 3tbk_A RIG-I helicase domain; 100.0 2.7E-29 9.2E-34 252.7 23.8 152 55-206 2-176 (555)
43 1t6n_A Probable ATP-dependent 100.0 8.1E-30 2.8E-34 226.4 16.3 186 36-224 14-218 (220)
44 2ykg_A Probable ATP-dependent 100.0 1.8E-28 6E-33 253.8 24.8 155 48-205 3-184 (696)
45 3dkp_A Probable ATP-dependent 100.0 1.5E-29 5.2E-34 228.4 13.9 184 42-227 35-241 (245)
46 4a2q_A RIG-I, retinoic acid in 100.0 4.3E-28 1.5E-32 254.1 22.1 151 53-206 243-419 (797)
47 1wp9_A ATP-dependent RNA helic 100.0 1.3E-27 4.5E-32 235.7 24.1 160 55-215 7-178 (494)
48 4gl2_A Interferon-induced heli 100.0 9E-28 3.1E-32 248.6 20.6 152 55-206 5-193 (699)
49 1gku_B Reverse gyrase, TOP-RG; 99.9 1.5E-28 5.1E-33 262.8 10.5 258 51-378 51-342 (1054)
50 4a2w_A RIG-I, retinoic acid in 99.9 4.3E-27 1.5E-31 249.4 19.9 148 56-206 247-419 (936)
51 2oca_A DAR protein, ATP-depend 99.9 1.1E-26 3.6E-31 231.9 20.2 274 55-378 111-417 (510)
52 2eyq_A TRCF, transcription-rep 99.9 7.6E-27 2.6E-31 251.1 17.7 256 50-378 596-883 (1151)
53 2fwr_A DNA repair protein RAD2 99.9 7.2E-27 2.5E-31 230.9 15.4 293 54-379 90-414 (472)
54 2whx_A Serine protease/ntpase/ 99.9 6.3E-28 2.2E-32 244.2 7.3 253 43-376 157-418 (618)
55 1gm5_A RECG; helicase, replica 99.9 3.3E-27 1.1E-31 243.5 12.2 256 48-379 359-659 (780)
56 2jlq_A Serine protease subunit 99.9 1.2E-27 4E-32 234.8 7.5 241 55-377 1-252 (451)
57 1tf5_A Preprotein translocase 99.9 1.6E-26 5.6E-31 234.7 15.1 151 53-205 79-287 (844)
58 2fsf_A Preprotein translocase 99.9 2.5E-26 8.6E-31 232.8 15.7 124 54-179 71-211 (853)
59 2xau_A PRE-mRNA-splicing facto 99.9 9.5E-26 3.2E-30 233.8 15.7 279 36-377 72-387 (773)
60 1nkt_A Preprotein translocase 99.9 7.8E-26 2.7E-30 229.6 13.0 152 53-206 107-316 (922)
61 3o8b_A HCV NS3 protease/helica 99.9 3.3E-26 1.1E-30 230.3 6.5 142 58-206 218-362 (666)
62 3h1t_A Type I site-specific re 99.9 1.2E-24 4.2E-29 220.7 17.8 159 54-215 175-354 (590)
63 2wv9_A Flavivirin protease NS2 99.9 3.2E-26 1.1E-30 233.3 6.0 239 57-376 215-473 (673)
64 2v6i_A RNA helicase; membrane, 99.9 9.3E-25 3.2E-29 212.9 14.7 225 71-376 1-234 (431)
65 1yks_A Genome polyprotein [con 99.9 7.3E-25 2.5E-29 214.1 7.8 229 69-380 5-243 (440)
66 3b6e_A Interferon-induced heli 99.9 2.6E-23 9.1E-28 183.4 15.3 150 54-203 30-216 (216)
67 2z83_A Helicase/nucleoside tri 99.9 5.2E-25 1.8E-29 216.4 4.1 230 67-377 16-254 (459)
68 1rif_A DAR protein, DNA helica 99.9 1.5E-22 5E-27 186.5 15.2 145 56-207 112-265 (282)
69 3llm_A ATP-dependent RNA helic 99.9 3.9E-22 1.3E-26 178.7 16.2 155 56-215 60-228 (235)
70 3rc3_A ATP-dependent RNA helic 99.9 2.1E-22 7.1E-27 204.8 14.1 221 68-375 151-388 (677)
71 3dmq_A RNA polymerase-associat 99.9 1.5E-21 5.3E-26 207.3 16.4 153 53-206 149-318 (968)
72 1z63_A Helicase of the SNF2/RA 99.8 1.1E-19 3.8E-24 180.6 22.0 144 56-206 36-189 (500)
73 2w00_A HSDR, R.ECOR124I; ATP-b 99.8 4.9E-20 1.7E-24 194.9 20.5 144 57-207 271-441 (1038)
74 2fz4_A DNA repair protein RAD2 99.8 3.8E-20 1.3E-24 165.8 16.2 142 54-208 90-232 (237)
75 2ipc_A Preprotein translocase 99.8 6.6E-19 2.3E-23 178.6 18.8 121 54-176 76-215 (997)
76 3mwy_W Chromo domain-containin 99.7 1.3E-16 4.5E-21 166.8 21.3 154 55-214 234-417 (800)
77 2vl7_A XPD; helicase, unknown 99.7 3.5E-17 1.2E-21 163.7 14.9 120 54-176 4-188 (540)
78 1z3i_X Similar to RAD54-like; 99.7 2.5E-16 8.6E-21 160.8 21.4 145 56-206 54-232 (644)
79 3jux_A Protein translocase sub 99.7 1.4E-15 4.7E-20 151.9 20.6 120 54-175 72-257 (822)
80 3crv_A XPD/RAD3 related DNA he 99.6 5.2E-15 1.8E-19 148.5 10.3 120 55-177 1-187 (551)
81 1c4o_A DNA nucleotide excision 99.4 4.8E-13 1.7E-17 136.6 10.5 69 54-125 5-78 (664)
82 2d7d_A Uvrabc system protein B 99.3 8.5E-11 2.9E-15 120.0 16.6 69 54-125 9-82 (661)
83 1w36_D RECD, exodeoxyribonucle 99.0 2.2E-09 7.5E-14 108.6 11.9 139 59-203 151-298 (608)
84 4a15_A XPD helicase, ATP-depen 98.8 1E-08 3.5E-13 103.8 8.9 69 56-124 2-75 (620)
85 3e1s_A Exodeoxyribonuclease V, 98.7 1.2E-07 4E-12 95.1 13.0 127 51-201 183-313 (574)
86 4b3f_X DNA-binding protein smu 98.6 1.5E-07 5.1E-12 96.0 10.1 69 57-125 189-258 (646)
87 3upu_A ATP-dependent DNA helic 98.5 6.4E-07 2.2E-11 87.5 12.5 134 54-201 21-162 (459)
88 2gk6_A Regulator of nonsense t 98.5 4.1E-06 1.4E-10 84.9 17.1 67 57-123 180-247 (624)
89 2hjv_A ATP-dependent RNA helic 98.4 2.1E-07 7.2E-12 77.6 5.9 75 293-378 21-104 (163)
90 1t5i_A C_terminal domain of A 98.4 2.3E-07 7.9E-12 78.1 5.1 75 293-378 17-100 (172)
91 2xzl_A ATP-dependent helicase 98.4 7.2E-06 2.4E-10 85.2 16.6 68 57-124 360-428 (802)
92 2wjy_A Regulator of nonsense t 98.4 7.3E-06 2.5E-10 85.1 16.1 68 57-124 356-424 (800)
93 1fuk_A Eukaryotic initiation f 98.3 6E-07 2.1E-11 74.9 5.4 74 294-378 17-99 (165)
94 2p6n_A ATP-dependent RNA helic 98.3 7.9E-07 2.7E-11 76.2 6.0 74 294-379 42-124 (191)
95 2rb4_A ATP-dependent RNA helic 98.3 3.9E-07 1.3E-11 76.9 3.4 73 294-377 21-102 (175)
96 2jgn_A DBX, DDX3, ATP-dependen 98.2 1.1E-06 3.9E-11 74.8 5.9 74 294-378 32-115 (185)
97 3lfu_A DNA helicase II; SF1 he 98.2 8.7E-05 3E-09 75.5 20.3 67 57-125 9-79 (647)
98 3eaq_A Heat resistant RNA depe 98.2 1.4E-06 4.7E-11 75.9 4.9 74 293-377 17-99 (212)
99 3i32_A Heat resistant RNA depe 98.1 3.3E-06 1.1E-10 77.5 6.5 75 293-378 14-97 (300)
100 2yjt_D ATP-dependent RNA helic 97.3 6E-07 2.1E-11 75.3 0.0 73 295-378 18-99 (170)
101 3ec2_A DNA replication protein 97.8 5.5E-05 1.9E-09 63.7 8.7 118 59-206 16-145 (180)
102 2o0j_A Terminase, DNA packagin 97.8 0.00028 9.7E-09 66.6 13.3 127 54-191 160-299 (385)
103 3cpe_A Terminase, DNA packagin 97.7 0.00084 2.9E-08 67.5 16.1 140 54-205 160-314 (592)
104 3vkw_A Replicase large subunit 97.6 0.00016 5.3E-09 69.3 9.0 84 74-175 163-246 (446)
105 2orw_A Thymidine kinase; TMTK, 97.6 0.00017 5.8E-09 61.0 8.0 40 71-110 2-41 (184)
106 2b8t_A Thymidine kinase; deoxy 97.5 0.00078 2.7E-08 58.7 11.1 113 71-201 11-123 (223)
107 1xx6_A Thymidine kinase; NESG, 97.4 0.00044 1.5E-08 58.8 8.6 40 71-110 7-46 (191)
108 2kjq_A DNAA-related protein; s 97.4 0.00022 7.5E-09 58.1 5.8 36 71-106 35-70 (149)
109 2j9r_A Thymidine kinase; TK1, 97.4 0.00031 1.1E-08 60.5 6.9 40 72-111 28-67 (214)
110 1w4r_A Thymidine kinase; type 97.3 0.00044 1.5E-08 58.6 7.0 39 71-109 19-57 (195)
111 1l8q_A Chromosomal replication 97.3 0.002 7E-08 59.4 11.6 36 73-108 38-73 (324)
112 2p65_A Hypothetical protein PF 97.2 0.0027 9.1E-08 52.9 11.0 22 72-93 43-64 (187)
113 3bos_A Putative DNA replicatio 97.2 0.0014 4.9E-08 57.1 9.7 36 71-106 51-86 (242)
114 3te6_A Regulatory protein SIR3 97.1 0.0039 1.3E-07 57.2 11.7 118 71-207 44-176 (318)
115 3e2i_A Thymidine kinase; Zn-bi 97.1 0.0007 2.4E-08 58.2 5.6 41 71-111 27-67 (219)
116 2v1u_A Cell division control p 97.0 0.0019 6.7E-08 60.7 9.3 22 72-93 44-65 (387)
117 2orv_A Thymidine kinase; TP4A 97.0 0.00088 3E-08 58.3 6.1 41 71-111 18-58 (234)
118 2w58_A DNAI, primosome compone 97.0 0.0017 5.7E-08 55.4 7.8 34 73-106 55-88 (202)
119 2qgz_A Helicase loader, putati 97.0 0.0012 4E-08 60.7 7.0 36 72-107 152-188 (308)
120 1jbk_A CLPB protein; beta barr 97.0 0.0093 3.2E-07 49.6 12.2 22 72-93 43-64 (195)
121 2z4s_A Chromosomal replication 96.9 0.0023 7.9E-08 61.8 8.8 101 73-203 131-236 (440)
122 2zpa_A Uncharacterized protein 96.9 0.0026 8.8E-08 64.0 9.1 114 57-206 175-290 (671)
123 2qby_B CDC6 homolog 3, cell di 96.9 0.0037 1.3E-07 58.9 9.9 36 72-107 45-88 (384)
124 1d2n_A N-ethylmaleimide-sensit 96.9 0.011 3.7E-07 53.0 12.2 21 73-93 65-85 (272)
125 3u4q_A ATP-dependent helicase/ 96.8 0.0017 5.9E-08 70.8 7.8 69 53-123 6-80 (1232)
126 2qby_A CDC6 homolog 1, cell di 96.8 0.007 2.4E-07 56.7 10.7 36 72-107 45-83 (386)
127 1uaa_A REP helicase, protein ( 96.7 0.0021 7.1E-08 65.7 6.9 67 57-125 2-72 (673)
128 1pjr_A PCRA; DNA repair, DNA r 96.7 0.0033 1.1E-07 64.7 8.4 66 57-124 11-80 (724)
129 1a5t_A Delta prime, HOLB; zinc 96.7 0.0057 1.9E-07 56.7 9.2 39 58-96 3-48 (334)
130 3kl4_A SRP54, signal recogniti 96.7 0.019 6.3E-07 55.1 12.6 130 73-214 98-234 (433)
131 1fnn_A CDC6P, cell division co 96.6 0.0051 1.8E-07 57.9 8.7 34 74-107 46-80 (389)
132 3co5_A Putative two-component 96.5 0.0036 1.2E-07 50.3 5.6 22 68-89 23-44 (143)
133 3n70_A Transport activator; si 96.4 0.0047 1.6E-07 49.7 6.0 22 70-91 22-43 (145)
134 1g5t_A COB(I)alamin adenosyltr 96.4 0.0032 1.1E-07 53.3 5.0 39 71-109 27-65 (196)
135 2chg_A Replication factor C sm 96.3 0.025 8.4E-07 48.2 10.3 20 73-92 39-58 (226)
136 3u61_B DNA polymerase accessor 96.2 0.008 2.7E-07 55.3 6.7 40 162-202 104-144 (324)
137 3syl_A Protein CBBX; photosynt 96.1 0.037 1.3E-06 50.2 10.9 20 72-91 67-86 (309)
138 3eie_A Vacuolar protein sortin 96.1 0.034 1.2E-06 51.1 10.5 32 72-106 51-82 (322)
139 1z5z_A Helicase of the SNF2/RA 96.0 0.0062 2.1E-07 54.7 5.1 76 293-379 96-185 (271)
140 3h4m_A Proteasome-activating n 96.0 0.033 1.1E-06 50.0 9.7 22 71-92 50-71 (285)
141 2bjv_A PSP operon transcriptio 95.9 0.016 5.4E-07 51.6 7.4 22 70-91 27-48 (265)
142 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.048 1.6E-06 47.0 10.4 38 70-107 21-58 (235)
143 1sxj_A Activator 1 95 kDa subu 95.9 0.039 1.3E-06 54.3 10.8 33 73-108 78-110 (516)
144 3dm5_A SRP54, signal recogniti 95.9 0.063 2.2E-06 51.4 11.5 122 73-206 101-226 (443)
145 1sxj_E Activator 1 40 kDa subu 95.9 0.024 8.2E-07 52.6 8.5 43 161-204 132-174 (354)
146 1iqp_A RFCS; clamp loader, ext 95.8 0.049 1.7E-06 49.6 10.2 20 74-93 48-67 (327)
147 3uk6_A RUVB-like 2; hexameric 95.6 0.23 7.7E-06 46.2 14.4 21 73-93 71-91 (368)
148 2qz4_A Paraplegin; AAA+, SPG7, 95.6 0.069 2.4E-06 47.0 10.3 21 72-92 39-59 (262)
149 4a1f_A DNAB helicase, replicat 95.6 0.021 7.3E-07 52.8 7.0 39 70-108 44-82 (338)
150 1njg_A DNA polymerase III subu 95.4 0.11 3.6E-06 44.7 10.6 19 74-92 47-65 (250)
151 2q6t_A DNAB replication FORK h 95.4 0.067 2.3E-06 51.5 10.1 39 70-108 198-237 (444)
152 1xwi_A SKD1 protein; VPS4B, AA 95.4 0.1 3.5E-06 47.9 10.9 19 73-91 46-64 (322)
153 3vfd_A Spastin; ATPase, microt 95.4 0.096 3.3E-06 49.4 10.8 34 72-108 148-181 (389)
154 2qp9_X Vacuolar protein sortin 95.3 0.095 3.3E-06 48.8 10.5 22 72-93 84-105 (355)
155 2cvh_A DNA repair and recombin 95.3 0.05 1.7E-06 46.5 7.9 35 71-108 19-53 (220)
156 4b4t_J 26S protease regulatory 95.2 0.15 5.1E-06 48.1 11.3 32 72-106 182-213 (405)
157 3pvs_A Replication-associated 95.2 0.028 9.6E-07 54.2 6.5 20 73-92 51-70 (447)
158 3bh0_A DNAB-like replicative h 95.1 0.13 4.4E-06 47.0 10.6 51 70-121 66-116 (315)
159 1w5s_A Origin recognition comp 95.1 0.064 2.2E-06 50.7 8.9 22 72-93 50-73 (412)
160 3pfi_A Holliday junction ATP-d 95.1 0.071 2.4E-06 49.1 8.9 20 73-92 56-75 (338)
161 1sxj_D Activator 1 41 kDa subu 95.1 0.084 2.9E-06 48.7 9.4 24 68-91 52-77 (353)
162 2zr9_A Protein RECA, recombina 95.1 0.013 4.4E-07 54.7 3.7 39 71-109 60-98 (349)
163 1ojl_A Transcriptional regulat 95.1 0.021 7.1E-07 52.1 5.0 22 70-91 23-44 (304)
164 2px0_A Flagellar biosynthesis 95.1 0.2 6.8E-06 45.4 11.5 123 72-214 105-233 (296)
165 2r6a_A DNAB helicase, replicat 95.1 0.082 2.8E-06 51.1 9.4 39 70-108 201-240 (454)
166 2gno_A DNA polymerase III, gam 95.1 0.051 1.7E-06 49.6 7.5 19 74-92 20-38 (305)
167 1sxj_C Activator 1 40 kDa subu 95.1 0.078 2.7E-06 49.0 9.0 25 69-93 41-67 (340)
168 1u94_A RECA protein, recombina 95.0 0.037 1.3E-06 51.6 6.5 90 71-176 62-154 (356)
169 3d8b_A Fidgetin-like protein 1 95.0 0.1 3.5E-06 48.6 9.7 21 72-92 117-137 (357)
170 3hr8_A Protein RECA; alpha and 94.9 0.048 1.7E-06 50.8 7.0 48 65-112 48-101 (356)
171 3bgw_A DNAB-like replicative h 94.8 0.1 3.6E-06 50.2 9.4 39 70-108 195-233 (444)
172 3b9p_A CG5977-PA, isoform A; A 94.8 0.2 6.8E-06 45.1 10.8 20 72-91 54-73 (297)
173 1xp8_A RECA protein, recombina 94.8 0.058 2E-06 50.5 7.2 90 71-176 73-165 (366)
174 2z43_A DNA repair and recombin 94.7 0.025 8.5E-07 52.1 4.5 40 71-110 106-151 (324)
175 3t15_A Ribulose bisphosphate c 94.6 0.094 3.2E-06 47.4 8.1 20 73-92 37-56 (293)
176 1nlf_A Regulatory protein REPA 94.6 0.12 4.2E-06 46.2 8.7 41 69-109 27-77 (279)
177 1hqc_A RUVB; extended AAA-ATPa 94.3 0.079 2.7E-06 48.3 7.0 21 72-92 38-58 (324)
178 1sxj_B Activator 1 37 kDa subu 94.3 0.11 3.8E-06 47.2 8.0 20 74-93 44-63 (323)
179 1jr3_A DNA polymerase III subu 94.2 0.11 3.7E-06 48.3 7.8 19 74-92 40-58 (373)
180 3cmu_A Protein RECA, recombina 94.2 0.084 2.9E-06 59.5 7.9 95 66-176 1415-1518(2050)
181 1ls1_A Signal recognition part 94.0 0.36 1.2E-05 43.6 10.6 36 72-107 98-133 (295)
182 1e9r_A Conjugal transfer prote 93.9 0.06 2.1E-06 51.6 5.5 44 71-114 52-95 (437)
183 3hu3_A Transitional endoplasmi 93.7 0.12 4E-06 50.4 7.2 21 72-92 238-258 (489)
184 2dr3_A UPF0273 protein PH0284; 93.7 0.077 2.6E-06 46.1 5.3 51 70-121 21-71 (247)
185 4b4t_I 26S protease regulatory 93.7 0.49 1.7E-05 44.9 11.0 22 72-93 216-237 (437)
186 2zan_A Vacuolar protein sortin 93.6 0.095 3.2E-06 50.5 6.3 20 72-91 167-186 (444)
187 2fna_A Conserved hypothetical 93.2 2.4 8.2E-05 38.5 15.0 35 58-93 17-51 (357)
188 2chq_A Replication factor C sm 93.0 0.16 5.6E-06 45.9 6.6 20 74-93 40-59 (319)
189 3pxi_A Negative regulator of g 92.9 0.42 1.4E-05 49.3 10.2 20 74-93 523-542 (758)
190 3m6a_A ATP-dependent protease 92.9 0.12 4.1E-06 51.1 5.9 20 71-90 107-126 (543)
191 2oap_1 GSPE-2, type II secreti 92.8 0.11 3.8E-06 50.9 5.4 48 58-106 245-293 (511)
192 1qvr_A CLPB protein; coiled co 92.5 0.28 9.7E-06 51.3 8.3 23 72-94 191-213 (854)
193 4ag6_A VIRB4 ATPase, type IV s 92.4 0.11 3.8E-06 49.0 4.7 42 71-112 34-75 (392)
194 2vhj_A Ntpase P4, P4; non- hyd 92.3 0.16 5.6E-06 46.4 5.4 33 71-106 122-154 (331)
195 3e70_C DPA, signal recognition 92.2 2.5 8.5E-05 38.7 13.4 124 72-207 129-256 (328)
196 2zts_A Putative uncharacterize 92.0 0.11 3.8E-06 45.2 3.9 52 71-123 29-81 (251)
197 2eyu_A Twitching motility prot 92.0 0.13 4.4E-06 45.7 4.2 37 69-106 22-60 (261)
198 1p9r_A General secretion pathw 91.9 0.22 7.5E-06 47.4 6.0 53 51-106 146-201 (418)
199 2ce7_A Cell division protein F 91.7 0.99 3.4E-05 43.6 10.5 20 73-92 50-69 (476)
200 2l8b_A Protein TRAI, DNA helic 91.7 0.28 9.4E-06 40.8 5.6 120 58-203 35-158 (189)
201 3cmw_A Protein RECA, recombina 91.6 0.24 8.2E-06 55.1 6.7 94 71-177 33-126 (1706)
202 1pzn_A RAD51, DNA repair and r 91.5 0.19 6.6E-06 46.6 5.1 38 71-108 130-173 (349)
203 2ffh_A Protein (FFH); SRP54, s 91.3 1.6 5.5E-05 41.5 11.3 121 73-205 99-223 (425)
204 3hjh_A Transcription-repair-co 90.7 0.92 3.2E-05 44.0 9.2 52 71-125 13-64 (483)
205 3cmu_A Protein RECA, recombina 90.5 0.49 1.7E-05 53.5 7.9 93 70-175 1079-1171(2050)
206 2ewv_A Twitching motility prot 90.5 0.2 6.7E-06 47.0 4.1 37 69-106 133-171 (372)
207 2ehv_A Hypothetical protein PH 90.3 0.29 9.9E-06 42.5 4.9 39 69-107 27-66 (251)
208 2r8r_A Sensor protein; KDPD, P 89.8 0.35 1.2E-05 41.8 4.8 33 74-106 8-40 (228)
209 3jvv_A Twitching mobility prot 89.8 0.31 1.1E-05 45.3 4.8 36 70-106 121-158 (356)
210 2gza_A Type IV secretion syste 89.7 0.21 7.2E-06 46.6 3.6 22 68-89 171-192 (361)
211 3b85_A Phosphate starvation-in 89.1 0.37 1.3E-05 41.1 4.5 32 59-90 9-40 (208)
212 3io5_A Recombination and repai 89.1 0.3 1E-05 44.5 4.0 88 74-176 30-124 (333)
213 1cr0_A DNA primase/helicase; R 89.0 0.36 1.2E-05 43.4 4.5 39 69-107 32-71 (296)
214 1vma_A Cell division protein F 88.6 0.42 1.4E-05 43.4 4.7 35 73-107 105-139 (306)
215 1kgd_A CASK, peripheral plasma 88.6 0.28 9.5E-06 40.6 3.2 20 71-90 4-23 (180)
216 1rj9_A FTSY, signal recognitio 88.4 0.51 1.7E-05 42.8 5.1 37 71-107 101-137 (304)
217 3cmw_A Protein RECA, recombina 88.3 0.62 2.1E-05 51.9 6.5 89 72-176 1431-1522(1706)
218 2yvu_A Probable adenylyl-sulfa 88.3 0.51 1.7E-05 39.0 4.7 36 71-106 12-47 (186)
219 1lvg_A Guanylate kinase, GMP k 88.1 0.29 1E-05 41.3 3.1 20 71-90 3-22 (198)
220 3vaa_A Shikimate kinase, SK; s 88.1 0.3 1E-05 41.0 3.2 25 69-93 22-46 (199)
221 2pt7_A CAG-ALFA; ATPase, prote 88.0 0.24 8.3E-06 45.6 2.7 21 69-89 168-188 (330)
222 3b9q_A Chloroplast SRP recepto 87.7 0.52 1.8E-05 42.7 4.7 36 72-107 100-135 (302)
223 1n0w_A DNA repair protein RAD5 87.5 0.51 1.7E-05 40.7 4.4 38 71-108 23-66 (243)
224 3tr0_A Guanylate kinase, GMP k 87.3 0.34 1.2E-05 40.6 3.1 22 69-90 4-25 (205)
225 3tau_A Guanylate kinase, GMP k 87.3 0.36 1.2E-05 41.0 3.2 20 71-90 7-26 (208)
226 3cf2_A TER ATPase, transitiona 87.3 0.81 2.8E-05 47.2 6.3 18 73-90 239-256 (806)
227 1zu4_A FTSY; GTPase, signal re 87.2 0.57 1.9E-05 42.8 4.7 36 72-107 105-140 (320)
228 1qhx_A CPT, protein (chloramph 86.9 0.3 1E-05 40.0 2.4 20 72-91 3-22 (178)
229 2qor_A Guanylate kinase; phosp 86.6 0.34 1.1E-05 41.0 2.6 22 69-90 9-30 (204)
230 4fcw_A Chaperone protein CLPB; 86.6 0.6 2E-05 42.0 4.5 34 73-106 48-81 (311)
231 2j41_A Guanylate kinase; GMP, 86.6 0.4 1.4E-05 40.3 3.1 22 69-90 3-24 (207)
232 1kag_A SKI, shikimate kinase I 86.6 0.45 1.5E-05 38.7 3.4 21 71-91 3-23 (173)
233 4b4t_M 26S protease regulatory 86.6 0.67 2.3E-05 44.2 4.9 22 72-93 215-236 (434)
234 3a8t_A Adenylate isopentenyltr 86.5 0.34 1.2E-05 44.6 2.7 21 72-92 40-60 (339)
235 3trf_A Shikimate kinase, SK; a 86.4 0.51 1.7E-05 38.9 3.6 22 72-93 5-26 (185)
236 1nks_A Adenylate kinase; therm 86.3 1.2 4.1E-05 36.6 6.0 38 74-113 3-41 (194)
237 1zp6_A Hypothetical protein AT 86.3 0.3 1E-05 40.6 2.1 22 69-90 6-27 (191)
238 2r44_A Uncharacterized protein 86.0 0.49 1.7E-05 43.2 3.6 24 67-90 41-64 (331)
239 4b4t_L 26S protease subunit RP 85.9 0.76 2.6E-05 43.9 4.9 22 72-93 215-236 (437)
240 2og2_A Putative signal recogni 85.7 0.74 2.5E-05 42.8 4.7 36 72-107 157-192 (359)
241 3nbx_X ATPase RAVA; AAA+ ATPas 85.5 0.48 1.6E-05 46.2 3.4 27 64-90 33-59 (500)
242 2qmh_A HPR kinase/phosphorylas 85.4 0.44 1.5E-05 40.3 2.7 22 71-92 33-54 (205)
243 3exa_A TRNA delta(2)-isopenten 85.4 0.42 1.4E-05 43.5 2.7 21 72-92 3-23 (322)
244 3hws_A ATP-dependent CLP prote 85.4 0.9 3.1E-05 42.1 5.2 22 71-92 50-71 (363)
245 1v5w_A DMC1, meiotic recombina 85.4 0.63 2.2E-05 42.9 4.1 39 72-110 122-166 (343)
246 3u4q_B ATP-dependent helicase/ 85.4 1.8 6E-05 47.0 8.1 67 75-152 4-73 (1166)
247 1xjc_A MOBB protein homolog; s 85.4 1 3.5E-05 36.9 4.9 33 74-107 6-39 (169)
248 3ney_A 55 kDa erythrocyte memb 85.4 0.54 1.9E-05 39.7 3.2 21 70-90 17-37 (197)
249 4a15_A XPD helicase, ATP-depen 85.3 2.3 7.8E-05 42.6 8.4 71 297-377 439-514 (620)
250 1z6g_A Guanylate kinase; struc 85.1 0.57 2E-05 40.1 3.4 22 69-90 20-41 (218)
251 1fuk_A Eukaryotic initiation f 85.0 6.3 0.00022 31.5 9.6 80 85-172 17-107 (165)
252 3lw7_A Adenylate kinase relate 85.0 0.39 1.3E-05 38.9 2.2 19 74-92 3-21 (179)
253 4b4t_K 26S protease regulatory 84.8 0.96 3.3E-05 43.1 5.0 22 72-93 206-227 (428)
254 1ofh_A ATP-dependent HSL prote 84.8 1 3.4E-05 40.4 5.0 21 72-92 50-70 (310)
255 3iij_A Coilin-interacting nucl 84.8 0.62 2.1E-05 38.2 3.4 23 70-92 9-31 (180)
256 1kht_A Adenylate kinase; phosp 84.6 0.45 1.6E-05 39.3 2.4 21 72-92 3-23 (192)
257 2v9p_A Replication protein E1; 84.6 0.54 1.9E-05 42.6 3.1 36 70-108 124-159 (305)
258 4gp7_A Metallophosphoesterase; 84.5 0.39 1.3E-05 39.3 2.0 22 70-91 7-28 (171)
259 1y63_A LMAJ004144AAA protein; 84.5 0.61 2.1E-05 38.6 3.2 22 71-92 9-30 (184)
260 1s96_A Guanylate kinase, GMP k 84.4 0.61 2.1E-05 40.1 3.2 23 68-90 12-34 (219)
261 3uie_A Adenylyl-sulfate kinase 84.3 1.1 3.7E-05 37.6 4.7 22 70-91 23-44 (200)
262 2v3c_C SRP54, signal recogniti 84.1 0.76 2.6E-05 43.9 4.0 35 73-107 100-134 (432)
263 3a00_A Guanylate kinase, GMP k 84.1 0.65 2.2E-05 38.5 3.2 17 73-89 2-18 (186)
264 3cm0_A Adenylate kinase; ATP-b 84.1 0.45 1.6E-05 39.2 2.2 22 71-92 3-24 (186)
265 2jgn_A DBX, DDX3, ATP-dependen 84.0 3.6 0.00012 33.9 7.8 81 82-169 29-120 (185)
266 2hjv_A ATP-dependent RNA helic 84.0 11 0.00038 30.0 10.7 81 83-171 20-111 (163)
267 1c9k_A COBU, adenosylcobinamid 84.0 0.49 1.7E-05 39.3 2.3 34 75-112 2-35 (180)
268 4a74_A DNA repair and recombin 83.9 0.9 3.1E-05 38.7 4.2 40 70-109 23-68 (231)
269 1q57_A DNA primase/helicase; d 83.7 0.84 2.9E-05 44.5 4.3 39 70-108 240-279 (503)
270 1lv7_A FTSH; alpha/beta domain 83.7 1.2 4.3E-05 38.8 5.1 20 72-91 45-64 (257)
271 1rz3_A Hypothetical protein rb 83.7 1.2 4.2E-05 37.3 4.8 35 72-106 22-56 (201)
272 3foz_A TRNA delta(2)-isopenten 83.7 0.66 2.3E-05 42.1 3.2 20 74-93 12-31 (316)
273 1znw_A Guanylate kinase, GMP k 83.6 0.7 2.4E-05 39.0 3.2 22 68-89 16-37 (207)
274 2ze6_A Isopentenyl transferase 83.5 0.72 2.5E-05 40.5 3.4 19 74-92 3-21 (253)
275 1ex7_A Guanylate kinase; subst 83.5 0.54 1.9E-05 39.3 2.4 17 73-89 2-18 (186)
276 3cf0_A Transitional endoplasmi 83.5 0.65 2.2E-05 41.9 3.1 21 71-91 48-68 (301)
277 2pez_A Bifunctional 3'-phospho 83.4 1.3 4.3E-05 36.3 4.7 21 71-91 4-24 (179)
278 2r2a_A Uncharacterized protein 83.4 0.5 1.7E-05 40.0 2.2 22 74-95 7-28 (199)
279 2i1q_A DNA repair and recombin 83.3 0.92 3.1E-05 41.3 4.1 97 72-176 98-217 (322)
280 1j8m_F SRP54, signal recogniti 83.3 1 3.5E-05 40.6 4.3 91 73-175 99-192 (297)
281 1knq_A Gluconate kinase; ALFA/ 83.2 0.48 1.6E-05 38.7 2.0 20 72-91 8-27 (175)
282 4eun_A Thermoresistant glucoki 83.2 0.75 2.6E-05 38.6 3.2 21 71-91 28-48 (200)
283 2yhs_A FTSY, cell division pro 83.1 1.1 3.7E-05 43.4 4.7 35 72-106 293-327 (503)
284 1m7g_A Adenylylsulfate kinase; 83.1 1.4 4.8E-05 37.2 5.0 33 58-91 12-44 (211)
285 1tue_A Replication protein E1; 83.0 0.6 2E-05 39.7 2.5 34 55-89 38-75 (212)
286 1ly1_A Polynucleotide kinase; 82.8 0.55 1.9E-05 38.3 2.2 18 74-91 4-21 (181)
287 4akg_A Glutathione S-transfera 82.8 0.52 1.8E-05 55.0 2.6 63 47-109 894-963 (2695)
288 3a4m_A L-seryl-tRNA(SEC) kinas 82.7 1.3 4.4E-05 39.0 4.7 35 72-106 4-38 (260)
289 2c95_A Adenylate kinase 1; tra 82.6 0.89 3.1E-05 37.6 3.5 24 69-92 6-29 (196)
290 1w36_B RECB, exodeoxyribonucle 82.6 2 6.9E-05 46.6 7.1 52 74-125 18-81 (1180)
291 3kb2_A SPBC2 prophage-derived 82.5 0.75 2.6E-05 37.1 2.9 19 74-92 3-21 (173)
292 2bwj_A Adenylate kinase 5; pho 82.4 1 3.5E-05 37.4 3.8 24 69-92 9-32 (199)
293 3eaq_A Heat resistant RNA depe 82.4 13 0.00043 31.3 10.8 80 82-169 15-105 (212)
294 4b4t_H 26S protease regulatory 82.2 1.1 3.8E-05 42.9 4.3 22 72-93 243-264 (467)
295 1nn5_A Similar to deoxythymidy 81.8 1.8 6.2E-05 36.3 5.2 24 70-93 7-30 (215)
296 2rhm_A Putative kinase; P-loop 81.4 0.65 2.2E-05 38.4 2.2 21 72-92 5-25 (193)
297 2z0h_A DTMP kinase, thymidylat 81.3 1.8 6.2E-05 35.7 5.0 30 75-104 3-32 (197)
298 2xxa_A Signal recognition part 81.3 1.4 4.8E-05 42.0 4.7 91 73-175 101-195 (433)
299 3fkq_A NTRC-like two-domain pr 81.3 3.2 0.00011 38.6 7.1 33 75-107 146-179 (373)
300 2rb4_A ATP-dependent RNA helic 81.3 3.7 0.00013 33.3 6.8 67 99-171 33-110 (175)
301 3crm_A TRNA delta(2)-isopenten 81.0 0.95 3.3E-05 41.3 3.2 21 73-93 6-26 (323)
302 1zuh_A Shikimate kinase; alpha 81.0 0.93 3.2E-05 36.6 2.9 21 73-93 8-28 (168)
303 1um8_A ATP-dependent CLP prote 80.7 0.98 3.4E-05 42.1 3.4 21 72-92 72-92 (376)
304 1tev_A UMP-CMP kinase; ploop, 80.5 0.66 2.3E-05 38.3 1.9 20 72-91 3-22 (196)
305 2v54_A DTMP kinase, thymidylat 80.5 0.82 2.8E-05 38.2 2.5 21 71-91 3-23 (204)
306 1u0j_A DNA replication protein 80.4 1.7 5.6E-05 38.5 4.5 43 47-90 75-122 (267)
307 3d3q_A TRNA delta(2)-isopenten 80.2 1 3.5E-05 41.4 3.2 20 73-92 8-27 (340)
308 3t0q_A AGR253WP; kinesin, alph 80.2 1.1 3.8E-05 41.4 3.5 34 57-90 62-104 (349)
309 3nwn_A Kinesin-like protein KI 80.2 1.4 4.7E-05 40.9 4.1 21 69-89 100-122 (359)
310 3vkg_A Dynein heavy chain, cyt 80.1 0.83 2.8E-05 54.0 3.0 65 45-109 875-946 (3245)
311 1f9v_A Kinesin-like protein KA 80.1 1.2 4E-05 41.2 3.5 34 57-90 61-103 (347)
312 3lda_A DNA repair protein RAD5 79.9 1.6 5.6E-05 41.1 4.6 38 71-108 177-220 (400)
313 1gvn_B Zeta; postsegregational 79.8 0.72 2.5E-05 41.4 2.0 19 73-91 34-52 (287)
314 3nwj_A ATSK2; P loop, shikimat 79.8 1.3 4.4E-05 38.9 3.6 22 71-92 47-68 (250)
315 2c9o_A RUVB-like 1; hexameric 79.7 1.2 4E-05 42.8 3.6 20 73-92 64-83 (456)
316 3lnc_A Guanylate kinase, GMP k 79.7 0.78 2.7E-05 39.5 2.1 21 70-90 25-45 (231)
317 2d7d_A Uvrabc system protein B 79.5 12 0.0004 37.8 11.0 86 84-175 429-525 (661)
318 1tf7_A KAIC; homohexamer, hexa 79.5 2 6.9E-05 42.0 5.3 40 70-109 279-318 (525)
319 2p6n_A ATP-dependent RNA helic 79.4 6.1 0.00021 32.8 7.6 65 99-169 53-128 (191)
320 3eph_A TRNA isopentenyltransfe 79.3 1.2 4.3E-05 41.8 3.5 20 74-93 4-23 (409)
321 1t5i_A C_terminal domain of A 79.2 7.5 0.00026 31.4 8.0 82 83-172 16-108 (172)
322 2bdt_A BH3686; alpha-beta prot 79.2 0.83 2.8E-05 37.8 2.1 20 73-92 3-22 (189)
323 1c4o_A DNA nucleotide excision 79.2 16 0.00054 36.8 11.9 86 84-175 423-519 (664)
324 1ak2_A Adenylate kinase isoenz 79.1 1.4 4.8E-05 37.9 3.6 23 71-93 15-37 (233)
325 1nij_A Hypothetical protein YJ 79.1 1.6 5.6E-05 39.7 4.2 16 74-89 6-21 (318)
326 1ixz_A ATP-dependent metallopr 79.1 1.1 3.9E-05 38.9 3.1 18 73-90 50-67 (254)
327 1aky_A Adenylate kinase; ATP:A 79.1 1.5 5.1E-05 37.3 3.8 22 71-92 3-24 (220)
328 3c8u_A Fructokinase; YP_612366 79.1 1 3.6E-05 38.0 2.7 19 71-89 21-39 (208)
329 1via_A Shikimate kinase; struc 79.1 1.5 5.1E-05 35.7 3.6 19 74-92 6-24 (175)
330 1np6_A Molybdopterin-guanine d 79.0 2.4 8.3E-05 34.8 4.9 17 73-89 7-23 (174)
331 2plr_A DTMP kinase, probable t 79.0 2.8 9.4E-05 35.0 5.4 22 71-92 3-24 (213)
332 2ius_A DNA translocase FTSK; n 79.0 2.4 8.3E-05 41.3 5.6 28 70-97 165-192 (512)
333 2wwf_A Thymidilate kinase, put 79.0 2.7 9.1E-05 35.2 5.3 22 71-92 9-30 (212)
334 1zd8_A GTP:AMP phosphotransfer 78.9 1.3 4.3E-05 37.9 3.3 22 71-92 6-27 (227)
335 3fb4_A Adenylate kinase; psych 78.9 1.3 4.5E-05 37.4 3.3 19 74-92 2-20 (216)
336 3umf_A Adenylate kinase; rossm 78.9 1.2 3.9E-05 38.3 2.9 24 70-93 27-50 (217)
337 1zak_A Adenylate kinase; ATP:A 78.6 1.7 5.8E-05 36.9 4.0 22 72-93 5-26 (222)
338 2iyv_A Shikimate kinase, SK; t 78.5 1.4 4.7E-05 36.2 3.3 20 73-92 3-22 (184)
339 1ye8_A Protein THEP1, hypothet 78.4 1.3 4.3E-05 36.6 3.0 16 74-89 2-17 (178)
340 3t61_A Gluconokinase; PSI-biol 78.4 1.3 4.4E-05 37.1 3.1 19 73-91 19-37 (202)
341 2r62_A Cell division protease 78.2 0.77 2.6E-05 40.4 1.7 21 72-92 44-64 (268)
342 1bg2_A Kinesin; motor protein, 78.2 1.7 5.7E-05 39.8 3.9 34 57-90 53-96 (325)
343 2pbr_A DTMP kinase, thymidylat 78.1 2.6 8.7E-05 34.6 4.9 19 74-92 2-20 (195)
344 3sr0_A Adenylate kinase; phosp 78.0 1.6 5.4E-05 37.0 3.5 20 74-93 2-21 (206)
345 3dl0_A Adenylate kinase; phosp 78.0 1.2 4.2E-05 37.6 2.8 19 74-92 2-20 (216)
346 3tlx_A Adenylate kinase 2; str 77.8 1.5 5.2E-05 38.1 3.5 23 71-93 28-50 (243)
347 1in4_A RUVB, holliday junction 77.7 1.3 4.4E-05 40.6 3.1 20 73-92 52-71 (334)
348 3asz_A Uridine kinase; cytidin 77.4 1.3 4.5E-05 37.2 2.9 19 71-89 5-23 (211)
349 2cdn_A Adenylate kinase; phosp 77.4 1.5 5.2E-05 36.6 3.2 21 72-92 20-40 (201)
350 4edh_A DTMP kinase, thymidylat 77.4 2.5 8.6E-05 36.0 4.6 39 70-109 4-44 (213)
351 1e6c_A Shikimate kinase; phosp 77.4 1.5 5E-05 35.5 3.1 20 73-92 3-22 (173)
352 1v8k_A Kinesin-like protein KI 77.3 1.9 6.5E-05 40.7 4.1 34 57-90 130-173 (410)
353 3b6u_A Kinesin-like protein KI 77.3 1.9 6.5E-05 40.2 4.1 33 57-89 77-119 (372)
354 1t5c_A CENP-E protein, centrom 77.2 1.9 6.6E-05 39.8 4.1 33 57-89 53-95 (349)
355 2rep_A Kinesin-like protein KI 77.2 1.5 5.1E-05 40.9 3.4 33 57-89 92-133 (376)
356 2nr8_A Kinesin-like protein KI 77.1 1.9 6.7E-05 39.9 4.1 21 69-89 99-121 (358)
357 3bfn_A Kinesin-like protein KI 77.0 1.5 5E-05 41.1 3.3 33 57-89 74-116 (388)
358 3gbj_A KIF13B protein; kinesin 77.0 2 6.7E-05 39.8 4.1 22 68-89 87-110 (354)
359 3dc4_A Kinesin-like protein NO 77.0 1.6 5.6E-05 40.1 3.5 33 57-89 70-112 (344)
360 1cke_A CK, MSSA, protein (cyti 76.9 1.5 5.1E-05 37.3 3.1 21 72-92 5-25 (227)
361 1g8p_A Magnesium-chelatase 38 76.7 1 3.5E-05 41.2 2.1 21 71-91 44-64 (350)
362 2vli_A Antibiotic resistance p 76.6 0.95 3.2E-05 37.0 1.7 22 71-92 4-25 (183)
363 1x88_A Kinesin-like protein KI 76.6 1.9 6.6E-05 39.9 3.9 33 57-89 64-106 (359)
364 2h58_A Kinesin-like protein KI 76.6 1.9 6.6E-05 39.4 3.9 23 67-89 74-98 (330)
365 2qt1_A Nicotinamide riboside k 76.5 1.4 4.9E-05 36.9 2.9 21 70-90 19-39 (207)
366 1gtv_A TMK, thymidylate kinase 76.5 1.2 4E-05 37.5 2.3 18 74-91 2-19 (214)
367 2vvg_A Kinesin-2; motor protei 76.5 2 6.7E-05 39.7 3.9 33 57-89 65-107 (350)
368 3pxg_A Negative regulator of g 76.5 2.3 7.7E-05 41.0 4.6 23 71-93 200-222 (468)
369 4etp_A Kinesin-like protein KA 76.5 2 6.9E-05 40.5 4.1 34 57-90 117-159 (403)
370 1goj_A Kinesin, kinesin heavy 76.5 1.9 6.6E-05 39.9 3.9 33 57-89 56-98 (355)
371 3tif_A Uncharacterized ABC tra 76.4 1.3 4.3E-05 38.5 2.5 21 69-89 28-48 (235)
372 2y65_A Kinesin, kinesin heavy 76.4 2 6.8E-05 39.9 3.9 33 57-89 60-102 (365)
373 4a14_A Kinesin, kinesin-like p 76.3 2 6.8E-05 39.6 3.9 33 57-89 59-101 (344)
374 3lre_A Kinesin-like protein KI 76.3 2 6.7E-05 39.8 3.9 33 57-89 81-123 (355)
375 2i4i_A ATP-dependent RNA helic 76.2 7.6 0.00026 36.1 8.1 74 90-169 266-350 (417)
376 1qf9_A UMP/CMP kinase, protein 76.1 1.6 5.5E-05 35.8 3.0 20 73-92 7-26 (194)
377 3be4_A Adenylate kinase; malar 75.9 2.1 7.3E-05 36.2 3.8 22 72-93 5-26 (217)
378 1iy2_A ATP-dependent metallopr 75.8 1.6 5.6E-05 38.6 3.1 18 73-90 74-91 (278)
379 2pt5_A Shikimate kinase, SK; a 75.8 1.3 4.3E-05 35.7 2.2 19 74-92 2-20 (168)
380 3kta_A Chromosome segregation 75.8 1.8 6.1E-05 35.4 3.2 16 74-89 28-43 (182)
381 1sq5_A Pantothenate kinase; P- 75.7 2.7 9.1E-05 38.0 4.6 19 72-90 80-98 (308)
382 2zfi_A Kinesin-like protein KI 75.6 2.1 7.3E-05 39.8 3.9 21 69-89 85-107 (366)
383 1f2t_A RAD50 ABC-ATPase; DNA d 75.5 1.8 6.2E-05 34.4 3.1 16 74-89 25-40 (149)
384 2i3b_A HCR-ntpase, human cance 75.5 1.9 6.4E-05 36.0 3.2 44 161-205 103-146 (189)
385 2x8a_A Nuclear valosin-contain 75.5 1.6 5.6E-05 38.7 3.0 18 73-90 45-62 (274)
386 3qf7_A RAD50; ABC-ATPase, ATPa 75.4 1.9 6.5E-05 40.1 3.6 17 74-90 25-41 (365)
387 3p32_A Probable GTPase RV1496/ 75.3 2.9 0.0001 38.6 4.8 34 74-107 81-114 (355)
388 3cob_A Kinesin heavy chain-lik 75.2 2 6.8E-05 40.0 3.6 33 57-89 56-97 (369)
389 2j37_W Signal recognition part 75.1 2.5 8.7E-05 41.1 4.5 35 74-108 103-137 (504)
390 1e4v_A Adenylate kinase; trans 75.1 2.2 7.5E-05 36.0 3.6 20 74-93 2-21 (214)
391 3tqc_A Pantothenate kinase; bi 75.0 3.4 0.00012 37.6 5.1 16 74-89 94-109 (321)
392 3k1j_A LON protease, ATP-depen 74.9 2.6 8.8E-05 42.1 4.6 24 68-91 56-79 (604)
393 2cbz_A Multidrug resistance-as 74.9 1.1 3.7E-05 39.0 1.6 21 69-89 28-48 (237)
394 3bs4_A Uncharacterized protein 74.6 2.8 9.5E-05 36.9 4.2 53 71-124 20-72 (260)
395 2iut_A DNA translocase FTSK; n 74.5 3.8 0.00013 40.4 5.6 40 71-110 213-256 (574)
396 2heh_A KIF2C protein; kinesin, 74.5 2.2 7.6E-05 39.9 3.8 34 57-90 110-153 (387)
397 4f4c_A Multidrug resistance pr 74.5 3 0.0001 45.8 5.3 42 161-202 570-611 (1321)
398 4e22_A Cytidylate kinase; P-lo 74.3 1.9 6.7E-05 37.6 3.2 22 71-92 26-47 (252)
399 4eaq_A DTMP kinase, thymidylat 74.3 2.9 0.0001 35.9 4.3 35 71-106 25-59 (229)
400 1tf7_A KAIC; homohexamer, hexa 74.3 3.1 0.00011 40.7 4.9 38 70-107 37-75 (525)
401 2jaq_A Deoxyguanosine kinase; 74.2 1.9 6.4E-05 35.8 3.0 19 74-92 2-20 (205)
402 2wbe_C Bipolar kinesin KRP-130 74.2 2.1 7.3E-05 39.8 3.6 33 57-89 76-118 (373)
403 3u06_A Protein claret segregat 74.1 2.4 8.2E-05 40.1 3.9 24 66-89 131-156 (412)
404 2bbw_A Adenylate kinase 4, AK4 74.0 2 7E-05 37.2 3.2 21 71-91 26-46 (246)
405 2qm8_A GTPase/ATPase; G protei 74.0 3.2 0.00011 38.1 4.7 37 71-107 54-90 (337)
406 1ukz_A Uridylate kinase; trans 74.0 1.4 4.9E-05 36.7 2.2 18 73-90 16-33 (203)
407 2if2_A Dephospho-COA kinase; a 74.0 2 6.9E-05 35.8 3.1 18 74-91 3-20 (204)
408 2p5t_B PEZT; postsegregational 73.9 1 3.6E-05 39.4 1.3 19 73-91 33-51 (253)
409 4tmk_A Protein (thymidylate ki 73.9 4.6 0.00016 34.3 5.4 22 71-92 2-23 (213)
410 3zq6_A Putative arsenical pump 73.3 3.8 0.00013 37.2 5.0 34 74-107 16-49 (324)
411 1g41_A Heat shock protein HSLU 73.1 2.2 7.4E-05 40.8 3.4 19 72-90 50-68 (444)
412 1jjv_A Dephospho-COA kinase; P 73.1 2 6.8E-05 35.9 2.9 19 74-92 4-22 (206)
413 1byi_A Dethiobiotin synthase; 73.0 4.3 0.00015 34.3 5.0 34 75-108 4-38 (224)
414 3lv8_A DTMP kinase, thymidylat 72.9 4.9 0.00017 34.8 5.4 32 71-102 26-57 (236)
415 1sgw_A Putative ABC transporte 72.8 1.9 6.5E-05 36.8 2.6 21 69-89 32-52 (214)
416 3v9p_A DTMP kinase, thymidylat 72.7 3.5 0.00012 35.5 4.3 24 69-92 22-45 (227)
417 2pcj_A ABC transporter, lipopr 72.6 1.9 6.5E-05 37.0 2.6 21 69-89 27-47 (224)
418 2owm_A Nckin3-434, related to 72.5 2.7 9.3E-05 40.1 3.9 30 60-89 115-154 (443)
419 3gfo_A Cobalt import ATP-bindi 72.3 1.8 6.1E-05 38.5 2.5 21 69-89 31-51 (275)
420 1ihu_A Arsenical pump-driving 72.1 3.9 0.00013 40.6 5.2 36 72-107 8-43 (589)
421 1htw_A HI0065; nucleotide-bind 71.7 1.7 5.9E-05 35.0 2.0 20 70-89 31-50 (158)
422 1vht_A Dephospho-COA kinase; s 71.7 1.6 5.4E-05 37.0 1.9 20 72-91 4-23 (218)
423 2ff7_A Alpha-hemolysin translo 71.6 2 6.7E-05 37.6 2.5 21 69-89 32-52 (247)
424 1uf9_A TT1252 protein; P-loop, 71.5 2.4 8.2E-05 35.1 3.0 19 73-91 9-27 (203)
425 2woo_A ATPase GET3; tail-ancho 71.5 4 0.00014 37.2 4.7 35 73-107 20-54 (329)
426 2pze_A Cystic fibrosis transme 71.4 2 6.9E-05 37.0 2.5 21 69-89 31-51 (229)
427 2xb4_A Adenylate kinase; ATP-b 71.4 2.9 9.8E-05 35.7 3.5 20 74-93 2-21 (223)
428 1mv5_A LMRA, multidrug resista 71.2 1.2 4.2E-05 38.7 1.1 21 69-89 25-45 (243)
429 1yrb_A ATP(GTP)binding protein 71.2 4 0.00014 35.4 4.5 33 74-107 16-48 (262)
430 2ghi_A Transport protein; mult 71.0 2 7E-05 37.8 2.5 21 69-89 43-63 (260)
431 3f9v_A Minichromosome maintena 70.9 1.9 6.3E-05 43.1 2.5 16 74-89 329-344 (595)
432 2f1r_A Molybdopterin-guanine d 70.9 1.7 5.7E-05 35.7 1.8 18 74-91 4-21 (171)
433 3auy_A DNA double-strand break 70.9 1.9 6.4E-05 40.2 2.3 17 73-89 26-42 (371)
434 2p67_A LAO/AO transport system 70.8 4.3 0.00015 37.2 4.8 37 71-107 55-91 (341)
435 3of5_A Dethiobiotin synthetase 70.7 4.7 0.00016 34.6 4.7 35 74-108 6-41 (228)
436 4g1u_C Hemin import ATP-bindin 70.7 2.1 7.1E-05 37.9 2.5 21 69-89 34-54 (266)
437 1qvr_A CLPB protein; coiled co 70.6 3 0.0001 43.5 4.1 21 73-93 589-609 (854)
438 2www_A Methylmalonic aciduria 70.5 4.6 0.00016 37.2 4.9 35 73-107 75-109 (349)
439 1ji0_A ABC transporter; ATP bi 70.5 2.1 7.3E-05 37.1 2.5 21 69-89 29-49 (240)
440 1g6h_A High-affinity branched- 70.4 2.1 7.3E-05 37.5 2.5 21 69-89 30-50 (257)
441 3nh6_A ATP-binding cassette SU 70.2 1.3 4.5E-05 40.1 1.1 21 69-89 77-97 (306)
442 2olj_A Amino acid ABC transpor 70.1 1.6 5.5E-05 38.6 1.6 21 69-89 47-67 (263)
443 2ixe_A Antigen peptide transpo 70.1 1.6 5.5E-05 38.7 1.6 21 69-89 42-62 (271)
444 1b0u_A Histidine permease; ABC 70.1 2.2 7.5E-05 37.6 2.5 21 69-89 29-49 (262)
445 2zu0_C Probable ATP-dependent 70.0 2.1 7E-05 37.9 2.3 21 69-89 43-63 (267)
446 3ug7_A Arsenical pump-driving 70.0 4.6 0.00016 37.2 4.8 33 75-107 29-61 (349)
447 2yz2_A Putative ABC transporte 69.8 1.6 5.6E-05 38.5 1.6 21 69-89 30-50 (266)
448 3pxi_A Negative regulator of g 69.8 3.8 0.00013 42.1 4.6 23 71-93 200-222 (758)
449 3bfv_A CAPA1, CAPB2, membrane 69.5 9.3 0.00032 33.6 6.5 49 58-106 58-117 (271)
450 2eyq_A TRCF, transcription-rep 69.4 8.9 0.0003 41.4 7.5 77 92-174 804-893 (1151)
451 3cio_A ETK, tyrosine-protein k 69.2 6 0.00021 35.4 5.3 34 73-106 105-139 (299)
452 3i32_A Heat resistant RNA depe 69.2 25 0.00084 31.4 9.4 79 83-169 13-102 (300)
453 1vpl_A ABC transporter, ATP-bi 69.0 2.4 8.2E-05 37.2 2.5 21 69-89 38-58 (256)
454 2jeo_A Uridine-cytidine kinase 68.8 2.5 8.4E-05 36.7 2.5 21 70-90 23-43 (245)
455 2qi9_C Vitamin B12 import ATP- 68.7 2.5 8.4E-05 37.0 2.5 21 69-89 23-43 (249)
456 2d2e_A SUFC protein; ABC-ATPas 68.6 3.2 0.00011 36.3 3.2 21 69-89 26-46 (250)
457 1ry6_A Internal kinesin; kines 68.5 3.6 0.00012 38.1 3.6 34 57-90 59-103 (360)
458 3sop_A Neuronal-specific septi 68.4 3.1 0.00011 36.8 3.2 16 74-89 4-19 (270)
459 3fht_A ATP-dependent RNA helic 68.3 15 0.00051 33.9 8.1 67 99-171 265-342 (412)
460 3tqf_A HPR(Ser) kinase; transf 68.2 3.1 0.0001 34.3 2.8 23 71-93 15-37 (181)
461 2nq2_C Hypothetical ABC transp 68.2 2.5 8.5E-05 37.0 2.5 21 69-89 28-48 (253)
462 3pey_A ATP-dependent RNA helic 67.7 16 0.00055 33.3 8.2 70 99-174 242-322 (395)
463 2grj_A Dephospho-COA kinase; T 67.7 3.2 0.00011 34.7 2.9 40 73-118 13-52 (192)
464 2ihy_A ABC transporter, ATP-bi 67.7 2.6 9E-05 37.5 2.5 21 69-89 44-64 (279)
465 2bbs_A Cystic fibrosis transme 67.6 2 7E-05 38.5 1.8 20 70-89 62-81 (290)
466 3qks_A DNA double-strand break 67.1 3.5 0.00012 34.7 3.1 17 73-89 24-40 (203)
467 3b5x_A Lipid A export ATP-bind 67.1 2.7 9.1E-05 41.8 2.7 21 69-89 366-386 (582)
468 3i5x_A ATP-dependent RNA helic 67.1 33 0.0011 33.3 10.7 70 98-173 337-420 (563)
469 1ltq_A Polynucleotide kinase; 66.9 2.5 8.4E-05 37.8 2.2 18 74-91 4-21 (301)
470 3kjh_A CO dehydrogenase/acetyl 66.7 4.5 0.00015 34.6 3.8 32 75-106 3-34 (254)
471 4akg_A Glutathione S-transfera 66.3 2.5 8.6E-05 49.4 2.6 21 69-89 1264-1284(2695)
472 2npi_A Protein CLP1; CLP1-PCF1 65.9 3 0.0001 40.0 2.7 20 70-89 136-155 (460)
473 3aez_A Pantothenate kinase; tr 65.7 3.2 0.00011 37.6 2.7 18 72-89 90-107 (312)
474 3iqw_A Tail-anchored protein t 65.6 5.9 0.0002 36.2 4.5 35 73-107 17-51 (334)
475 1svm_A Large T antigen; AAA+ f 65.6 3.8 0.00013 38.2 3.2 21 70-90 167-187 (377)
476 1hyq_A MIND, cell division inh 65.5 6.8 0.00023 33.9 4.8 32 76-107 7-38 (263)
477 3fvq_A Fe(3+) IONS import ATP- 65.5 3 0.0001 38.7 2.5 21 69-89 27-47 (359)
478 1odf_A YGR205W, hypothetical 3 65.0 3.6 0.00012 36.8 2.9 16 74-89 33-48 (290)
479 1uj2_A Uridine-cytidine kinase 65.0 2.9 9.8E-05 36.4 2.2 17 74-90 24-40 (252)
480 2f6r_A COA synthase, bifunctio 64.9 3 0.0001 37.1 2.3 21 73-93 76-96 (281)
481 1g3q_A MIND ATPase, cell divis 64.8 6 0.00021 33.6 4.3 32 76-107 7-38 (237)
482 3r20_A Cytidylate kinase; stru 64.8 5 0.00017 34.6 3.7 22 71-92 8-29 (233)
483 2vp4_A Deoxynucleoside kinase; 64.7 2.8 9.5E-05 35.9 2.0 19 71-89 19-37 (230)
484 1q3t_A Cytidylate kinase; nucl 64.6 4.3 0.00015 34.8 3.2 23 70-92 14-36 (236)
485 2woj_A ATPase GET3; tail-ancho 64.4 6.8 0.00023 36.1 4.7 34 74-107 20-55 (354)
486 3gd7_A Fusion complex of cysti 64.1 3.2 0.00011 38.9 2.5 21 69-89 44-64 (390)
487 2qen_A Walker-type ATPase; unk 64.0 6.3 0.00021 35.6 4.4 34 59-92 17-51 (350)
488 2v1x_A ATP-dependent DNA helic 64.0 24 0.00081 35.0 8.9 65 99-169 266-341 (591)
489 1yks_A Genome polyprotein [con 63.7 14 0.00047 35.1 6.9 63 99-168 176-245 (440)
490 3sqw_A ATP-dependent RNA helic 63.5 43 0.0015 32.8 10.8 69 99-173 287-369 (579)
491 1wp9_A ATP-dependent RNA helic 63.3 28 0.00097 32.5 9.2 86 81-172 340-446 (494)
492 4dzz_A Plasmid partitioning pr 63.3 5.6 0.00019 32.9 3.7 109 78-214 8-118 (206)
493 1cp2_A CP2, nitrogenase iron p 63.2 8.3 0.00028 33.5 5.0 32 75-106 4-35 (269)
494 3qkt_A DNA double-strand break 63.1 3.2 0.00011 38.0 2.2 17 73-89 24-40 (339)
495 3hjn_A DTMP kinase, thymidylat 63.1 9 0.00031 31.9 4.9 37 75-111 3-40 (197)
496 2ph1_A Nucleotide-binding prot 63.1 6.6 0.00022 34.2 4.2 31 77-107 24-54 (262)
497 3end_A Light-independent proto 63.0 7.6 0.00026 34.7 4.7 35 72-106 41-75 (307)
498 1r6b_X CLPA protein; AAA+, N-t 63.0 4.7 0.00016 41.3 3.7 23 71-93 206-228 (758)
499 2afh_E Nitrogenase iron protei 63.0 8.5 0.00029 34.0 5.0 32 75-106 5-36 (289)
500 4hlc_A DTMP kinase, thymidylat 62.9 7.3 0.00025 32.7 4.3 37 72-109 2-39 (205)
No 1
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-42 Score=369.13 Aligned_cols=361 Identities=62% Similarity=1.052 Sum_probs=297.5
Q ss_pred chhceeccCCCCCccccccccc-CCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEE
Q psy6275 26 EACLHEVALPPDLEYQPLAQSK-EKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVI 104 (391)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vl 104 (391)
..|...+.+|..+...++++.+ ......++|+|+++|.++++.+.++++++++||||+|||++|.++++..+..+.+++
T Consensus 54 ~~~~h~~~~p~~~~~~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL 133 (1010)
T 2xgj_A 54 HQVRHQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVI 133 (1010)
T ss_dssp EEEEEEEECCTTCCCCCGGGCCCSSCSCCCSSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEE
T ss_pred cCceeeecCCCCcccCCCCcccChhhHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEE
Confidence 4566677777777666666655 333777899999999999999999999999999999999999999999988899999
Q ss_pred EEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhH
Q psy6275 105 YTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVW 184 (391)
Q Consensus 105 vl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~ 184 (391)
|++|+++|+.|++..+.+.++.+++++|+...+.+++|+|+||+++.+++.+....++++++||+||+|.+.+++++..+
T Consensus 134 ~l~PtkaLa~Q~~~~l~~~~~~vglltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~ 213 (1010)
T 2xgj_A 134 YTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVW 213 (1010)
T ss_dssp EEESSHHHHHHHHHHHHHHHSCEEEECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHH
T ss_pred EECChHHHHHHHHHHHHHHhCCEEEEeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999998887778899999999999999999899999
Q ss_pred HHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-hhhhhchHHH
Q psy6275 185 EETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVA 263 (391)
Q Consensus 185 ~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~ 263 (391)
+.++..++.+.|+++||||+++..++++|+......++.++....++.+++++++..+.+.++..++.. .+....+...
T Consensus 214 e~il~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (1010)
T 2xgj_A 214 EETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKA 293 (1010)
T ss_dssp HHHHHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHH
Confidence 999999999999999999999998999999877778899999999999999999887767777766654 4555555555
Q ss_pred HHHhhhhhhhhccCCCCCCCCCCC-CCC-----CcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHH
Q psy6275 264 MNVLANAGDAAKAGDHKGGRKGGP-KGG-----VQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEE 337 (391)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~ 337 (391)
+..+.............+++.... ++. ....+..+++.+...+..++||||+|++.|+.++..|...++....+
T Consensus 294 ~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e 373 (1010)
T 2xgj_A 294 MASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 373 (1010)
T ss_dssp HHTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHH
T ss_pred HHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHH
Confidence 444332100000000001110000 110 03456778888877777799999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 338 VKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 338 r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
+..+...+.+.+..+...|..++++..+..++.+||++|||||+...|+
T Consensus 374 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~ 422 (1010)
T 2xgj_A 374 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 422 (1010)
T ss_dssp HHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999988775
No 2
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-43 Score=372.95 Aligned_cols=356 Identities=62% Similarity=1.046 Sum_probs=291.1
Q ss_pred eccCCCCCcccccccccCCCC-ccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 31 EVALPPDLEYQPLAQSKEKPA-REYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
....+..|...++++.+...+ ..++|+|+++|.++++.+.++++++++||||||||++|.+|++..+..+++++|++|+
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 157 QVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 236 (1108)
T ss_dssp EECCSSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 344566788888888776654 4456679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHH
Q psy6275 110 KALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI 189 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~ 189 (391)
++|+.|++..+.+.++.+++++|+...+.+++|+|+||++|.+++.+....++++++||+||||++.+++++..++.++.
T Consensus 237 raLa~Q~~~~l~~~~~~VglltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~ 316 (1108)
T 3l9o_A 237 KALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETII 316 (1108)
T ss_dssp HHHHHHHHHHHHHHTSSEEEECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccEEeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877788999999999999999999999999999
Q ss_pred HhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-hhhhhchHHHHHHhh
Q psy6275 190 LLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLA 268 (391)
Q Consensus 190 ~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~ 268 (391)
.++...|+++||||+++..+++.|++.....++.++....++.+++++++....+.++..++.. .+....+...+..+.
T Consensus 317 ~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~ 396 (1108)
T 3l9o_A 317 LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 396 (1108)
T ss_dssp HSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-
T ss_pred hcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHH
Confidence 9999999999999999998899999988888999999999999999999887777777766655 555555555554433
Q ss_pred hhhhhhccCCCCCCC--CC----CCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHHHH
Q psy6275 269 NAGDAAKAGDHKGGR--KG----GPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342 (391)
Q Consensus 269 ~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~~~ 342 (391)
............++. +. ..+......+..++..+...+..++||||++++.|+.++..|...++....++..+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 476 (1108)
T 3l9o_A 397 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 476 (1108)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHH
T ss_pred hhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 211100000000000 00 001111345667777777777789999999999999999999998888888888888
Q ss_pred HHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 343 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
..+.+.+..+...|..++++..+...+.+||++||+||+...|.
T Consensus 477 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 477 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp HHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 88888888888899999999999999999999999999987765
No 3
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=6.5e-40 Score=347.69 Aligned_cols=344 Identities=44% Similarity=0.758 Sum_probs=282.3
Q ss_pred cccccccCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q psy6275 41 QPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREF 120 (391)
Q Consensus 41 ~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~ 120 (391)
.+..+.+......++|+|+++|.++++.+.++++++++||||+|||++|++++...+..+.+++|++|+++|+.|+++.+
T Consensus 23 ~~f~~l~~~~~~~~~f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 23 ENFDELIPNPARSWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp TTHHHHCSSCSCCCSSCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHH
T ss_pred cchhhhhHhHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 33444455667788999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHhcc--cceeeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEE
Q psy6275 121 EEQFK--DVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFV 198 (391)
Q Consensus 121 ~~~~~--~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i 198 (391)
.+.+. .++.++|+...+.+++|+|+||+++.+++......+.++++||+||||++.+++++..++.++..++.+.+++
T Consensus 103 ~~~~~~~~v~~l~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 103 KETFDDVNIGLITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp HTTC--CCEEEECSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred HHHcCCCeEEEEeCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCEE
Confidence 99876 8889999999999999999999999999988877788999999999999999999999999999999999999
Q ss_pred EEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc-hhhhhchHHHHHHhhhhhhhhccC
Q psy6275 199 FLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLANAGDAAKAG 277 (391)
Q Consensus 199 ~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 277 (391)
+||||+++..++++|++.....++.++....++.+++++++. ...+...++.. .+....+......+..........
T Consensus 183 lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 260 (997)
T 4a4z_A 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWA--KKELIPVINQNSEFLEANFRKHKEILNGESAKGAPS 260 (997)
T ss_dssp EEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEE--TTEEEEEECTTCCBCHHHHHHHHHHHC---------
T ss_pred EEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEec--CCcchhcccchhhhhHHHHHHHHHHhhccccccccc
Confidence 999999999999999987777889999999999999988875 23344444443 454555544444333211100000
Q ss_pred --------C----C-----CCCC--------CCC---------------------CCCCCcccHHHHHHHHHHcCCCcEE
Q psy6275 278 --------D----H-----KGGR--------KGG---------------------PKGGVQTNCFKIVKMIMERNLAPVI 311 (391)
Q Consensus 278 --------~----~-----~~~~--------~~~---------------------~~~~~~~~~~~l~~~l~~~~~~~~i 311 (391)
. . .++. ++. ........+..+++.+...+..++|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~I 340 (997)
T 4a4z_A 261 KTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMV 340 (997)
T ss_dssp --------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEE
Confidence 0 0 0000 000 0001234567888888888878999
Q ss_pred EEEcchhhHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 312 VFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 312 IF~~t~~~~~~la~~L~~~g~~~~~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
|||+|++.|+.++..|...++...+++..+...+.+.+..+...|..+++++.+..++.+||.+||+||+...|+
T Consensus 341 VF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~ 415 (997)
T 4a4z_A 341 VFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKE 415 (997)
T ss_dssp EECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred EEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987764
No 4
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.2e-39 Score=313.95 Aligned_cols=280 Identities=18% Similarity=0.247 Sum_probs=224.9
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc--------CCeEEEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--------SQRVIYT 106 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~--------~~~vlvl 106 (391)
.+|..+++++.+.+.+...||. |+++|.++++.+.++++++++||||||||++|++|++..+.. ++++||+
T Consensus 56 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil 135 (434)
T 2db3_A 56 QHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIV 135 (434)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEE
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEE
Confidence 3688899999999999999998 999999999999999999999999999999999999987632 5689999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+||++|+.|+++.++++.. .+..++|+... ...++|+|+||+++.+++.+....+.+++++|+||||++
T Consensus 136 ~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~ 215 (434)
T 2db3_A 136 SPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRM 215 (434)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHH
T ss_pred ecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhh
Confidence 9999999999999999875 56667777653 346899999999999999888778899999999999999
Q ss_pred CccccchhHHHHHHHh--CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeec
Q psy6275 176 RDKERGYVWEETLILL--SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVD 251 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~--~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~ 251 (391)
+++++...+..++..+ +...|+++||||++.. +.++...+..++..+..... ....+.+.++.+...
T Consensus 216 ~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~------- 286 (434)
T 2db3_A 216 LDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEE--IQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKY------- 286 (434)
T ss_dssp TSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHH--HHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGG-------
T ss_pred hccCcHHHHHHHHHhcCCCCCceEEEEeccCCHH--HHHHHHHhccCCEEEEeccccccccccceEEEEeCcH-------
Confidence 9999999998888874 5679999999999765 22333344445555443322 223455555443211
Q ss_pred CchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccC
Q psy6275 252 DNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLN 331 (391)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g 331 (391)
.+...+.+.+..... ++||||+|++.|+.+++.|.+.|
T Consensus 287 -----------------------------------------~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~ 324 (434)
T 2db3_A 287 -----------------------------------------AKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKE 324 (434)
T ss_dssp -----------------------------------------GHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTT
T ss_pred -----------------------------------------HHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCC
Confidence 234466667766654 59999999999999999999876
Q ss_pred CCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 332 FNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 332 ~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+.+ ..+|..+.+.|++ ...+|++|+ ++++|+|+++
T Consensus 325 ~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----------v~~rGlDi~~ 368 (434)
T 2db3_A 325 FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----------VASRGLDIKN 368 (434)
T ss_dssp CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----------GGTSSCCCTT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----------hhhCCCCccc
Confidence 654 3678888888887 567788875 9999999875
No 5
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.3e-37 Score=297.47 Aligned_cols=283 Identities=17% Similarity=0.250 Sum_probs=224.4
Q ss_pred CCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccH
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIK 110 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~ 110 (391)
..+|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++|+++.+. .+.++||++|++
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTR 115 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSH
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcH
Confidence 35789999999999999999998 99999999999999999999999999999999999998764 468999999999
Q ss_pred HHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 111 ALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 111 ~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
+|+.|+++.+.++.. .+....|+... ...++|+|+||+++..++......+..++++|+||||++.+++
T Consensus 116 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 195 (410)
T 2j0s_A 116 ELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 195 (410)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh
Confidence 999999999998875 44556666543 2357999999999999998877778899999999999999888
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeecCchhhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVDDNKFKE 257 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 257 (391)
+...+..++..++...|++++|||+++. +.+++..+...+..+..... ....+.+++..+...
T Consensus 196 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 260 (410)
T 2j0s_A 196 FKEQIYDVYRYLPPATQVVLISATLPHE--ILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVERE------------- 260 (410)
T ss_dssp THHHHHHHHTTSCTTCEEEEEESCCCHH--HHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESST-------------
T ss_pred hHHHHHHHHHhCccCceEEEEEcCCCHH--HHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcH-------------
Confidence 8888888888888889999999999754 34444445555655543322 222345544432211
Q ss_pred hchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC---
Q psy6275 258 HNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--- 334 (391)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--- 334 (391)
..+...+.+.+.....+++||||++++.++.+++.|.+.|+.+
T Consensus 261 ----------------------------------~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 306 (410)
T 2j0s_A 261 ----------------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM 306 (410)
T ss_dssp ----------------------------------THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEE
T ss_pred ----------------------------------HhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEe
Confidence 0123355555666566799999999999999999999876654
Q ss_pred -----hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 -----TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 -----~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|..+.+.|++ ...+|++|+ ++++|||++.
T Consensus 307 h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----------~~~~Gidi~~ 344 (410)
T 2j0s_A 307 HGDMPQKERESIMKEFRSGASRVLISTD-----------VWARGLDVPQ 344 (410)
T ss_dssp CTTSCHHHHHHHHHHHHHTSSCEEEECG-----------GGSSSCCCTT
T ss_pred eCCCCHHHHHHHHHHHHCCCCCEEEECC-----------hhhCcCCccc
Confidence 3678888888887 567778775 8999999964
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=293.90 Aligned_cols=279 Identities=16% Similarity=0.156 Sum_probs=215.3
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----------------
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---------------- 99 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---------------- 99 (391)
+|+.+++++.+.+.+...||. |+++|.++++.+.++++++++||||+|||++|++|++..+..
T Consensus 16 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 95 (417)
T 2i4i_A 16 SFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRY 95 (417)
T ss_dssp SGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTT
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccc
Confidence 688899999999999999996 999999999999999999999999999999999999887632
Q ss_pred -----CCeEEEEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCc
Q psy6275 100 -----SQRVIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITRE 163 (391)
Q Consensus 100 -----~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~ 163 (391)
++++||++|+++|+.|+++.++++.. .+..++|+... ...++|+|+||+++..++......+..
T Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 175 (417)
T 2i4i_A 96 GRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDF 175 (417)
T ss_dssp BSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTT
T ss_pred ccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhh
Confidence 25799999999999999999998865 45567776543 346899999999999999887777889
Q ss_pred cceEEEecccccCccccchhHHHHHHHh--C--CCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceE
Q psy6275 164 VGWVIFDEIHYMRDKERGYVWEETLILL--S--DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQH 236 (391)
Q Consensus 164 ~~~lViDE~h~~~~~~~~~~~~~i~~~~--~--~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~ 236 (391)
++++|+||||++.++++...+..++... + ...|++++|||+++. ..+.. .+...+..+..... .+..+.+
T Consensus 176 ~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~ 252 (417)
T 2i4i_A 176 CKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLAR---DFLDEYIFLAVGRVGSTSENITQ 252 (417)
T ss_dssp CCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHH---HHCSSCEEEEEC----CCSSEEE
T ss_pred CcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHH---HHcCCCEEEEeCCCCCCccCceE
Confidence 9999999999998888888888777642 2 268899999999765 33333 23334444433222 2234555
Q ss_pred eeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHc-CCCcEEEEEc
Q psy6275 237 YLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMER-NLAPVIVFSF 315 (391)
Q Consensus 237 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIF~~ 315 (391)
.++.++.. .+...+.+.+... ..+++||||+
T Consensus 253 ~~~~~~~~------------------------------------------------~~~~~l~~~l~~~~~~~~~lVf~~ 284 (417)
T 2i4i_A 253 KVVWVEES------------------------------------------------DKRSFLLDLLNATGKDSLTLVFVE 284 (417)
T ss_dssp EEEECCGG------------------------------------------------GHHHHHHHHHHTCCTTCEEEEECS
T ss_pred EEEEeccH------------------------------------------------hHHHHHHHHHHhcCCCCeEEEEEC
Confidence 54433211 2233455555554 3568999999
Q ss_pred chhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 316 SKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 316 t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
++++|+.+++.|.+.|+.+ .++|..+.+.|++ ...+|++| +++++|||++.
T Consensus 285 ~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----------~~~~~Gidip~ 344 (417)
T 2i4i_A 285 TKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----------AVAARGLDISN 344 (417)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----------HHHHTTSCCCC
T ss_pred CHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----------ChhhcCCCccc
Confidence 9999999999998876654 3678888888877 56777777 59999999963
No 7
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.9e-36 Score=291.25 Aligned_cols=283 Identities=17% Similarity=0.239 Sum_probs=220.0
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++++++.+. .+.+++|++|+++
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 119 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRE 119 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred cCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHH
Confidence 4788899999999999999997 99999999999999999999999999999999999998875 4678999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+.+.++++.. .+....|+... ...++|+|+||+++.+.+......+..++++|+||||++.+++
T Consensus 120 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 199 (414)
T 3eiq_A 120 LAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG 199 (414)
T ss_dssp HHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccC
Confidence 99999999999875 34445555442 1567999999999999998877778889999999999998888
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCC--CcCceEeeccCCCCCeeeeecCchhhh
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR--PTPLQHYLFPNGGDGIHLIVDDNKFKE 257 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~~v~~~~~~~ 257 (391)
+...+..++..++.+.|+++||||+++. ...........+..+...... ...+.++++.....
T Consensus 200 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 264 (414)
T 3eiq_A 200 FKDQIYDIFQKLNSNTQVVLLSATMPSD--VLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE------------- 264 (414)
T ss_dssp THHHHHHHHTTSCTTCEEEEECSCCCHH--HHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS-------------
T ss_pred cHHHHHHHHHhCCCCCeEEEEEEecCHH--HHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH-------------
Confidence 8888888888888899999999999755 333333444455554433222 22344444432211
Q ss_pred hchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--
Q psy6275 258 HNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET-- 335 (391)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~-- 335 (391)
..+...+...+.....+++||||++++.|+.+++.|.+.++.+.
T Consensus 265 ----------------------------------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 310 (414)
T 3eiq_A 265 ----------------------------------EWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAM 310 (414)
T ss_dssp ----------------------------------TTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC
T ss_pred ----------------------------------HhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEe
Confidence 12344666666766778999999999999999999998776653
Q ss_pred ------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 336 ------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 336 ------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.+|..+.+.|++ ..++|++|+ ++++|||++.+
T Consensus 311 h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----------~~~~Gidip~v 349 (414)
T 3eiq_A 311 HGDMDQKERDVIMREFRSGSSRVLITTD-----------LLARGIDVQQV 349 (414)
T ss_dssp ---CHHHHHHHHHHHHSCC---CEEECS-----------SCC--CCGGGC
T ss_pred cCCCCHHHHHHHHHHHHcCCCcEEEECC-----------ccccCCCccCC
Confidence 677888888876 667888885 89999999743
No 8
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.8e-36 Score=329.46 Aligned_cols=322 Identities=24% Similarity=0.340 Sum_probs=228.7
Q ss_pred ccceeEEeeeh-hchhceeccC-------CCCCc----cccc--------ccccCCCCccCCCC-CcHHHHHHHHHHh-c
Q psy6275 14 KACMKVIVVET-LEACLHEVAL-------PPDLE----YQPL--------AQSKEKPAREYPFV-LDPFQKEAILCIE-N 71 (391)
Q Consensus 14 ~~~~~~~~~~~-~~~~~~~~~~-------~~~~~----~~~l--------~~~~~~~~~~~~~~-~~~~Q~~~i~~i~-~ 71 (391)
.|.+.+..+.+ |..|.....+ |..+. .+.+ .....+.+...+|+ |+|+|.++++.+. .
T Consensus 862 p~~~~i~~~sd~w~~~~~~~~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~ 941 (1724)
T 4f92_B 862 PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNS 941 (1724)
T ss_dssp CSEEEEEEEESSSTTCEEEEEEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSC
T ss_pred CCeEEEEEEEccccCCCceeeeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcC
Confidence 46677777777 7777665442 22111 1111 12223445566787 9999999999885 5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcc-----cceeeeCCcccC----CCC
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFK-----DVGLITGDVTIN----PSS 140 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~-----~v~~~~g~~~~~----~~~ 140 (391)
++|++++||||||||+++.+|+++.+.+ +++++|++|+++|+.|.+..|++.++ +++.++|+...+ .++
T Consensus 942 ~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~ 1021 (1724)
T 4f92_B 942 DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKG 1021 (1724)
T ss_dssp CSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCC
Confidence 7899999999999999999999998753 67999999999999999999987654 577788887654 368
Q ss_pred CEEEEcHHHHHHHHhc--CccccCccceEEEecccccCccccchhHHHHHHHh-------CCCCcEEEEcccCCChHHHH
Q psy6275 141 SCLIMTTEILRNMLYR--GSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-------SDNVRFVFLSATIPNASQFA 211 (391)
Q Consensus 141 ~I~v~Tp~~l~~~l~~--~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-------~~~~~~i~~SAT~~~~~~~~ 211 (391)
+|+|+|||++..++.+ ....+++++++|+||+|.+.+ .+|..++.++..+ +.+.|+|+||||++|.++++
T Consensus 1022 ~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla 1100 (1724)
T 4f92_B 1022 NIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA 1100 (1724)
T ss_dssp SEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHH
T ss_pred CEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHH
Confidence 9999999999877754 334578999999999998876 4788887766543 56799999999999999999
Q ss_pred HHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCC
Q psy6275 212 QWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGV 291 (391)
Q Consensus 212 ~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (391)
+|++. ....++.+....||++++.++...+. ......+..+..
T Consensus 1101 ~WL~~-~~~~~~~~~~~~RPvpL~~~i~~~~~--------------~~~~~~~~~~~~---------------------- 1143 (1724)
T 4f92_B 1101 HWLGC-SATSTFNFHPNVRPVPLELHIQGFNI--------------SHTQTRLLSMAK---------------------- 1143 (1724)
T ss_dssp HHHTC-CSTTEEECCGGGCSSCEEEEEEEECC--------------CSHHHHHHTTHH----------------------
T ss_pred HHhCC-CCCCeEEeCCCCCCCCeEEEEEeccC--------------CCchhhhhhhcc----------------------
Confidence 99974 34567788889999999988764322 122222222211
Q ss_pred cccHHHHHHHH-HHcCCCcEEEEEcchhhHHHHHHHhhccCCCChHHHHH---HHHHHHHHhhhcchhhccCcchHhHHH
Q psy6275 292 QTNCFKIVKMI-MERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKL---VDDVFSNAMDVLSEEDRKLPQIENILP 367 (391)
Q Consensus 292 ~~~~~~l~~~l-~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~~r~~---~~~~~~~~~~~l~~~d~~~~~~~~~~~ 367 (391)
.+...+ .....+++||||+||+.|+.+|..|........+.+.. ..+........+. ...+.+
T Consensus 1144 -----~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--------d~~L~~ 1210 (1724)
T 4f92_B 1144 -----PVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLS--------DSTLKE 1210 (1724)
T ss_dssp -----HHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCC--------CHHHHH
T ss_pred -----hHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcc--------cHHHHH
Confidence 122222 22446799999999999999999886532111100000 0111222222222 245778
Q ss_pred HHHhhhhhccCCCCccccc
Q psy6275 368 LLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 368 ~l~~GI~~~h~~~~~~~r~ 386 (391)
++.+||++|||||+..+|+
T Consensus 1211 ~l~~GIa~hHagL~~~~R~ 1229 (1724)
T 4f92_B 1211 TLLNGVGYLHEGLSPMERR 1229 (1724)
T ss_dssp HHHTTEEEECTTSCHHHHH
T ss_pred HHhCCEEEECCCCCHHHHH
Confidence 9999999999999988875
No 9
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-36 Score=333.92 Aligned_cols=282 Identities=24% Similarity=0.342 Sum_probs=209.6
Q ss_pred CCC-CcHHHHHHHHHH-hcCCcEEEEecCCcchHHHHHHHHHHHHhc-----------CCeEEEEcccHHHHHHHHHHHH
Q psy6275 55 PFV-LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----------SQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 55 ~~~-~~~~Q~~~i~~i-~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----------~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
||+ |+++|.++++.+ .+++|++++||||||||+++.+++++.+.+ +.++||++|+++|+.|+++.|+
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 687 999999999976 568999999999999999999999998842 5789999999999999999999
Q ss_pred Hhcc----cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcCc--cccCccceEEEecccccCccccchhHHHHHHH-
Q psy6275 122 EQFK----DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGS--EITREVGWVIFDEIHYMRDKERGYVWEETLIL- 190 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~~--~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~- 190 (391)
+.++ .|+.++|+..... .++|+|+|||++..++.+.. ..++++++||+||+|.+.+ .+|..++.++.+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l~rl 234 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALVARA 234 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHHHHH
Confidence 8876 5677899887654 47999999999877765543 3578999999999998866 689988876653
Q ss_pred ------hCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHH
Q psy6275 191 ------LSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAM 264 (391)
Q Consensus 191 ------~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 264 (391)
++...|+|+||||++|.+++++|++.......+++....||++++++++.+.... .....
T Consensus 235 ~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~--------------~~~~~ 300 (1724)
T 4f92_B 235 IRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKK--------------AIKRF 300 (1724)
T ss_dssp HHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCC--------------HHHHH
T ss_pred HHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcc--------------hhhhh
Confidence 4678999999999999999999998655556778888899999998876443211 11111
Q ss_pred HHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhHHHHHHHhhccCCCChH------H
Q psy6275 265 NVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDCEIYAMQMAKLNFNETE------E 337 (391)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~~------~ 337 (391)
..+.. .+...+.+ ..++++||||+||+.|+.+|+.|.+....... .
T Consensus 301 ~~~~~---------------------------~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~ 353 (1724)
T 4f92_B 301 QIMNE---------------------------IVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLRE 353 (1724)
T ss_dssp HHHHH---------------------------HHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSC
T ss_pred HHHHH---------------------------HHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhccc
Confidence 11110 12222222 23568999999999999999999753211100 0
Q ss_pred HHHHHHHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 338 VKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 338 r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
.....+.+. .+........+.+++.+||++|||||+..+|.
T Consensus 354 ~~~~~~~~~--------~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~ 394 (1724)
T 4f92_B 354 GSASTEVLR--------TEAEQCKNLELKDLLPYGFAIHHAGMTRVDRT 394 (1724)
T ss_dssp CTTCSSHHH--------HTTSCCSTHHHHHHTTTTEEEECSSSCTHHHH
T ss_pred chhHHHHHH--------hhhcccccHHHHHHhhcCEEEEcCCCCHHHHH
Confidence 000001111 11222334568899999999999999998885
No 10
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=7.4e-36 Score=288.91 Aligned_cols=281 Identities=20% Similarity=0.239 Sum_probs=219.8
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+...||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+. .+.+++|++|+++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 100 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE 100 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHH
Confidence 4789999999999999999998 99999999999999999999999999999999999998875 3568999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~ 180 (391)
|+.|+++.++++.. .+...+|+... ...++|+|+||+++.+.+......+.+++++|+||||++.+.++
T Consensus 101 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~ 180 (400)
T 1s2m_A 101 LALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDF 180 (400)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHH
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhch
Confidence 99999999999876 45556666542 35679999999999998887777788999999999999988777
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCC-CCcCceEeeccCCCCCeeeeecCchhhhhc
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDY-RPTPLQHYLFPNGGDGIHLIVDDNKFKEHN 259 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~-~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~ 259 (391)
...+..++..++...++++||||++.. +.+++......+..+..... ....+.+++..+..
T Consensus 181 ~~~~~~i~~~~~~~~~~i~lSAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 242 (400)
T 1s2m_A 181 KTIIEQILSFLPPTHQSLLFSATFPLT--VKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEE---------------- 242 (400)
T ss_dssp HHHHHHHHTTSCSSCEEEEEESCCCHH--HHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCG----------------
T ss_pred HHHHHHHHHhCCcCceEEEEEecCCHH--HHHHHHHHcCCCeEEEeccccccCCceeEEEEech----------------
Confidence 777888888788889999999999755 33333333344444332221 12234444332211
Q ss_pred hHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC-----
Q psy6275 260 YQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE----- 334 (391)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~----- 334 (391)
..+...+...+.....+++||||++++.++.+++.|.+.|+.+
T Consensus 243 --------------------------------~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~ 290 (400)
T 1s2m_A 243 --------------------------------RQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHA 290 (400)
T ss_dssp --------------------------------GGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECT
T ss_pred --------------------------------hhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecC
Confidence 0223345555666666799999999999999999998865543
Q ss_pred ---hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 ---TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 ---~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|..+.+.|++ ...+|++|+ ++++|+|++.
T Consensus 291 ~~~~~~r~~~~~~f~~g~~~vLv~T~-----------~~~~Gidip~ 326 (400)
T 1s2m_A 291 RMKQQERNKVFHEFRQGKVRTLVCSD-----------LLTRGIDIQA 326 (400)
T ss_dssp TSCHHHHHHHHHHHHTTSSSEEEESS-----------CSSSSCCCTT
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEcC-----------ccccCCCccC
Confidence 4678888888877 567788775 8999999964
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.6e-35 Score=287.26 Aligned_cols=285 Identities=16% Similarity=0.182 Sum_probs=218.3
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~ 109 (391)
.+|+.+++++.+.+.+.++||. |+++|.++++.+.++ ++++++||||+|||++|++|++..+.. +++++|++|+
T Consensus 25 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 104 (412)
T 3fht_A 25 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 104 (412)
T ss_dssp SCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCC
Confidence 4789999999999999999997 999999999999886 899999999999999999999988753 4589999999
Q ss_pred HHHHHHHHHHHHHhcc-----cceeeeCCcccC----CCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCc-c
Q psy6275 110 KALSNQKYREFEEQFK-----DVGLITGDVTIN----PSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRD-K 178 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~-----~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~-~ 178 (391)
++|+.|+++.++++.. .+....++.... ...+|+|+||+++..++.+ ....+.+++++|+||||++.+ .
T Consensus 105 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~ 184 (412)
T 3fht_A 105 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 184 (412)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcC
Confidence 9999999999998765 344455554432 2468999999999998865 445568999999999999875 5
Q ss_pred ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeecCchh
Q psy6275 179 ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVDDNKF 255 (391)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~~~~~ 255 (391)
++...+..+...++.+.|++++|||+++. ..+... ....+..+..... ....+.+.++.....
T Consensus 185 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 250 (412)
T 3fht_A 185 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQK---VVPDPNVIKLKREEETLDTIKQYYVLCSSR----------- 250 (412)
T ss_dssp TTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHH---HSSSCEEECCCGGGSSCTTEEEEEEECSSH-----------
T ss_pred CcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHH---hcCCCeEEeeccccccccCceEEEEEcCCh-----------
Confidence 56667777777888889999999999765 334332 3334444332221 222444444432210
Q ss_pred hhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC-
Q psy6275 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE- 334 (391)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~- 334 (391)
..+...+.+.+.....+++||||++++.|+.++..|.+.++.+
T Consensus 251 ------------------------------------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~ 294 (412)
T 3fht_A 251 ------------------------------------DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVA 294 (412)
T ss_dssp ------------------------------------HHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCE
T ss_pred ------------------------------------HHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEE
Confidence 0223455666666666799999999999999999999876654
Q ss_pred -------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCC
Q psy6275 335 -------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKP 381 (391)
Q Consensus 335 -------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~ 381 (391)
..+|..+.+.|++ ..++|++|+ ++++|||++ |.++|
T Consensus 295 ~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----------~~~~Gidip~~~~Vi~~~~p 344 (412)
T 3fht_A 295 LLSGEMMVEQRAAVIERFREGKEKVLVTTN-----------VCARGIDVEQVSVVINFDLP 344 (412)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSCSEEEECG-----------GGTSSCCCTTEEEEEESSCC
T ss_pred EecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----------ccccCCCccCCCEEEEECCC
Confidence 4778888888887 567778775 899999997 35666
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.7e-35 Score=285.30 Aligned_cols=282 Identities=18% Similarity=0.222 Sum_probs=214.8
Q ss_pred CCCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcc
Q psy6275 35 PPDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTP 108 (391)
Q Consensus 35 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P 108 (391)
..+|+.+++++.+.+.+...||. |+++|.++++.+.++ +++++++|||+|||++|+++++..+. .+++++|++|
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 83 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAP 83 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECC
Confidence 36789999999999999999997 999999999999887 89999999999999999999998874 4679999999
Q ss_pred cHHHHHHHHHHHHHhcc----cceeeeCCccc---CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-ccc
Q psy6275 109 IKALSNQKYREFEEQFK----DVGLITGDVTI---NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD-KER 180 (391)
Q Consensus 109 ~~~L~~q~~~~~~~~~~----~v~~~~g~~~~---~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~-~~~ 180 (391)
+++|+.|+++.++++.. .+....++... ..+++|+|+||+++...+......+.+++++|+||||++.+ .++
T Consensus 84 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 163 (395)
T 3pey_A 84 SRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGL 163 (395)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCcccc
Confidence 99999999999999875 33444444332 23679999999999999888777788999999999999876 556
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeC--CCCcCceEeeccCCCCCeeeeecCchhhh
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTD--YRPTPLQHYLFPNGGDGIHLIVDDNKFKE 257 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~--~~~~~i~~~~~~~~~~~~~~~v~~~~~~~ 257 (391)
...+..+...++.+.|++++|||+++. ..+...+ ...+..+.... .....+.+.+......
T Consensus 164 ~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 227 (395)
T 3pey_A 164 GDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKI---VPNANTLELQTNEVNVDAIKQLYMDCKNE------------- 227 (395)
T ss_dssp HHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHH---SCSCEEECCCGGGCSCTTEEEEEEECSSH-------------
T ss_pred HHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHh---CCCCeEEEccccccccccccEEEEEcCch-------------
Confidence 667777777788889999999999765 4444432 23333322221 1222334433322110
Q ss_pred hchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC---
Q psy6275 258 HNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--- 334 (391)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--- 334 (391)
..+...+...+.....+++||||++++.|+.+++.|++.|+.+
T Consensus 228 ----------------------------------~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 273 (395)
T 3pey_A 228 ----------------------------------ADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSIL 273 (395)
T ss_dssp ----------------------------------HHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred ----------------------------------HHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEe
Confidence 0112234444444556799999999999999999999876654
Q ss_pred -----hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 -----TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 -----~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|..+.+.|++ ...+|++|+ ++++|||++.
T Consensus 274 ~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----------~~~~Gidip~ 311 (395)
T 3pey_A 274 HGDLQTQERDRLIDDFREGRSKVLITTN-----------VLARGIDIPT 311 (395)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCCEEEECG-----------GGSSSCCCTT
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECC-----------hhhcCCCccc
Confidence 3678888888887 557777774 8999999973
No 13
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.2e-35 Score=283.38 Aligned_cols=280 Identities=19% Similarity=0.231 Sum_probs=217.7
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+.. +.+++|++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 4688899999999999999998 999999999999999999999999999999999999988643 569999999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCcccC--------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcc
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTIN--------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDK 178 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~~--------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~ 178 (391)
|+.|+.+.+.++.. .+..++|+.... ..++|+|+||+++..++......+.+++++|+||||++.++
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 99999999998853 566677765532 24799999999999988877777889999999999998763
Q ss_pred -ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC---CcCceEeeccCCCCCeeeeecCc
Q psy6275 179 -ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR---PTPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 179 -~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~---~~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
++...+..++...+...|++++|||+++. ..+.. .....+..+...... ...+.+++.....
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 234 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR---KFMQDPMEIFVDDETKLTLHGLQQYYVKLKD---------- 234 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHH---HHCSSCEEEECCCCCCCCCTTCEEEEEECCG----------
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHH---HHcCCCeEEEecCccccCcccceEEEEEcCc----------
Confidence 55566667777777789999999999876 33333 233455544433322 1234444432221
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN 333 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~ 333 (391)
..+...+.+.+.....+++||||++++.|+.+++.|.+.|+.
T Consensus 235 --------------------------------------~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~ 276 (391)
T 1xti_A 235 --------------------------------------NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFP 276 (391)
T ss_dssp --------------------------------------GGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred --------------------------------------hhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCc
Confidence 022345566666667789999999999999999999887654
Q ss_pred C--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 334 E--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 334 ~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+ .++|..+.+.|++ ...+|++|+ ++++|+|++.
T Consensus 277 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----------~~~~Gidi~~ 318 (391)
T 1xti_A 277 AIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----------LFGRGMDIER 318 (391)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----------CCSSCBCCTT
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----------hhhcCCCccc
Confidence 3 3678888888877 567777775 8899999974
No 14
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.3e-36 Score=296.45 Aligned_cols=281 Identities=16% Similarity=0.188 Sum_probs=150.7
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHhcC---CeEEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLKQS---QRVIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~~~---~~vlvl~P~ 109 (391)
.+|..+++++.+.+.+..+||. |+++|.++++.+..+ ++++++||||||||++|++|++..+..+ +++||++|+
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt 171 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSS
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeCh
Confidence 3688889999999999999997 999999999999876 8999999999999999999999887543 489999999
Q ss_pred HHHHHHHHHHHHHhcc-----cceeeeCCcccC----CCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCc-c
Q psy6275 110 KALSNQKYREFEEQFK-----DVGLITGDVTIN----PSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRD-K 178 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~-----~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~-~ 178 (391)
++|+.|++..++++.. .+....++.... ...+|+|+||+++.+++.+ ....+.++++||+||||++.+ .
T Consensus 172 ~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~ 251 (479)
T 3fmp_B 172 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 251 (479)
T ss_dssp HHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTST
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcC
Confidence 9999999988888764 344455544432 2468999999999998865 345568999999999999875 4
Q ss_pred ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCC--CCcCceEeeccCCCCCeeeeecCchh
Q psy6275 179 ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDY--RPTPLQHYLFPNGGDGIHLIVDDNKF 255 (391)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~--~~~~i~~~~~~~~~~~~~~~v~~~~~ 255 (391)
++...+..+...++.+.|++++|||+++. ..++.. ....+..+..... ....+.++++.++..
T Consensus 252 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----------- 317 (479)
T 3fmp_B 252 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQK---VVPDPNVIKLKREEETLDTIKQYYVLCSSR----------- 317 (479)
T ss_dssp THHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHH---HSSSEEEEEEC------------------------------
T ss_pred CcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHH---HcCCCeEEeccccccCcCCceEEEEEeCCH-----------
Confidence 56666667777788889999999999876 444443 3334444333222 122344443332211
Q ss_pred hhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh
Q psy6275 256 KEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET 335 (391)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~ 335 (391)
..+...+...+......++||||++++.|+.++..|...++.+.
T Consensus 318 ------------------------------------~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~ 361 (479)
T 3fmp_B 318 ------------------------------------DEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVA 361 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------HHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEE
Confidence 01223444444444556899999999999999999988765543
Q ss_pred --------HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 336 --------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 336 --------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
.+|..+.+.|++ ..++|++| +++++|||+++
T Consensus 362 ~lh~~~~~~~R~~~~~~f~~g~~~iLv~T-----------~~~~~GlDip~ 401 (479)
T 3fmp_B 362 LLSGEMMVEQRAAVIERFREGKEKVLVTT-----------NVCARGIDVEQ 401 (479)
T ss_dssp ---------------------------------------------------
T ss_pred EecCCCCHHHHHHHHHHHHcCCCcEEEEc-----------cccccCCcccc
Confidence 567777777776 55666655 69999999974
No 15
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.1e-34 Score=298.78 Aligned_cols=308 Identities=27% Similarity=0.370 Sum_probs=225.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKAL 112 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L 112 (391)
.+|+.+++++.+.+.++..||. |+++|.++++. +.++++++++||||||||+++.+++++.+. .+++++|++|+++|
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 4688899999999999999996 99999999998 788999999999999999999999988765 78999999999999
Q ss_pred HHHHHHHHHHhcc---cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHH
Q psy6275 113 SNQKYREFEEQFK---DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185 (391)
Q Consensus 113 ~~q~~~~~~~~~~---~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~ 185 (391)
+.|++++++.+.. .++..+|+..... .++|+|+||+++..++.+....+++++++|+||+|++.+..++..++
T Consensus 88 a~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~ 167 (715)
T 2va8_A 88 TNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVE 167 (715)
T ss_dssp HHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHH
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHH
Confidence 9999999954432 6777888766543 68999999999999888877778999999999999998878898999
Q ss_pred HHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHH
Q psy6275 186 ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMN 265 (391)
Q Consensus 186 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 265 (391)
.++..++ +.|+++||||+++..++++|++. ..+....++.+++..++..+.......+ .|..... .
T Consensus 168 ~i~~~~~-~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~~~~~~~~~~---~~~~~~~----~ 233 (715)
T 2va8_A 168 SVTIRAK-RRNLLALSATISNYKQIAKWLGA------EPVATNWRPVPLIEGVIYPERKKKEYNV---IFKDNTT----K 233 (715)
T ss_dssp HHHHHHH-TSEEEEEESCCTTHHHHHHHHTC------EEEECCCCSSCEEEEEEEECSSTTEEEE---EETTSCE----E
T ss_pred HHHHhcc-cCcEEEEcCCCCCHHHHHHHhCC------CccCCCCCCCCceEEEEecCCcccceee---ecCcchh----h
Confidence 8888776 79999999999989999999862 3466778888887766542211100000 0000000 0
Q ss_pred HhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC---ChHHHHHHH
Q psy6275 266 VLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN---ETEEVKLVD 342 (391)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~---~~~~r~~~~ 342 (391)
.+ . ........+.+.+ . .++++||||+++++|+.++..|.+.... ..++.....
T Consensus 234 ~~-------~--------------~~~~~~~~~~~~~-~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 290 (715)
T 2va8_A 234 KV-------H--------------GDDAIIAYTLDSL-S-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEIL 290 (715)
T ss_dssp EE-------E--------------SSSHHHHHHHHHH-T-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHH
T ss_pred hc-------c--------------cchHHHHHHHHHH-h-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHH
Confidence 00 0 0001122233333 2 3469999999999999999999875321 222322222
Q ss_pred HHHHHHhhhcchhhccCcchHhHHHHHHhhhhhccCCCCccccc
Q psy6275 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHGVKPYGLWQ 386 (391)
Q Consensus 343 ~~~~~~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~~~~~~r~ 386 (391)
...+.+. +........+.+++..||.+|||||+..+|+
T Consensus 291 ----~~~~~i~--~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~ 328 (715)
T 2va8_A 291 ----KQLDDIE--EGGSDEKELLKSLISKGVAYHHAGLSKALRD 328 (715)
T ss_dssp ----HHHHTCC--SSCHHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred ----HHHHHhh--hccccccHHHHHHHhcCEEEECCCCCHHHHH
Confidence 2222121 1111122456778889999999999988875
No 16
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.5e-35 Score=277.61 Aligned_cols=278 Identities=18% Similarity=0.224 Sum_probs=214.5
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC-CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN-QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~-~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+...+.+.||. |+++|.++++.+.++ +++++.+|||+|||++++.+++..+.. +.+++|++|+++
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHH
Confidence 4688899999999999999996 999999999998877 799999999999999999999888754 679999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
|+.|+++.+.++.+ .+...+|+.... ..++|+|+||+++...+......+.+++++|+||||.+.++++.
T Consensus 86 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 165 (367)
T 1hv8_A 86 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFI 165 (367)
T ss_dssp HHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTH
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchH
Confidence 99999999999876 445566655432 26899999999999998887777889999999999999887777
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchH
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQ 261 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~ 261 (391)
..+..++..++...+++++|||+++. ...++......+..+ .......+++.++.....
T Consensus 166 ~~~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------------- 224 (367)
T 1hv8_A 166 KDVEKILNACNKDKRILLFSATMPRE--ILNLAKKYMGDYSFI--KAKINANIEQSYVEVNEN----------------- 224 (367)
T ss_dssp HHHHHHHHTSCSSCEEEEECSSCCHH--HHHHHHHHCCSEEEE--ECCSSSSSEEEEEECCGG-----------------
T ss_pred HHHHHHHHhCCCCceEEEEeeccCHH--HHHHHHHHcCCCeEE--EecCCCCceEEEEEeChH-----------------
Confidence 77888888888889999999999765 112221222222222 222233445444432210
Q ss_pred HHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC-------
Q psy6275 262 VAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE------- 334 (391)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~------- 334 (391)
++...+.+.+. ....++||||+++++++.+++.|.+.|+.+
T Consensus 225 -------------------------------~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~ 272 (367)
T 1hv8_A 225 -------------------------------ERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDL 272 (367)
T ss_dssp -------------------------------GHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred -------------------------------HHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCC
Confidence 22334555554 345689999999999999999999876543
Q ss_pred -hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 335 -TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 335 -~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
..+|..+.+.|++ ...++++|+ ++++|+|++.
T Consensus 273 ~~~~r~~~~~~f~~~~~~vlv~T~-----------~~~~Gid~~~ 306 (367)
T 1hv8_A 273 SQSQREKVIRLFKQKKIRILIATD-----------VMSRGIDVND 306 (367)
T ss_dssp CHHHHHHHHHHHHTTSSSEEEECT-----------THHHHCCCSC
T ss_pred CHHHHHHHHHHHHcCCCeEEEECC-----------hhhcCCCccc
Confidence 3678888888876 557777774 9999999964
No 17
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.3e-34 Score=300.55 Aligned_cols=285 Identities=25% Similarity=0.385 Sum_probs=224.6
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALS 113 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~ 113 (391)
+|+.+++++.+.+.++..||. |+++|.++++. +.++++++++||||||||+++.+++++.+. .+++++|++|+++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 467888999999999999996 99999999998 788999999999999999999999987765 689999999999999
Q ss_pred HHHHHHHHHhcc---cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 114 NQKYREFEEQFK---DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 114 ~q~~~~~~~~~~---~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
.|++++++++.. .++.++|+..... +++|+|+||+++..++.+....+++++++|+||+|.+.++.++..++.
T Consensus 82 ~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ 161 (720)
T 2zj8_A 82 EEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEV 161 (720)
T ss_dssp HHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHH
Confidence 999999965433 6778888766543 689999999999998888777788999999999999988889999999
Q ss_pred HHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHH
Q psy6275 187 TLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNV 266 (391)
Q Consensus 187 i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 266 (391)
++..++.+.|+++||||+++..++++|++. ..+....+|.+++..++..+ .+.. .....
T Consensus 162 ll~~l~~~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~rp~~l~~~~~~~~--~~~~-------~~~~~------ 220 (720)
T 2zj8_A 162 ILAHMLGKAQIIGLSATIGNPEELAEWLNA------ELIVSDWRPVKLRRGVFYQG--FVTW-------EDGSI------ 220 (720)
T ss_dssp HHHHHBTTBEEEEEECCCSCHHHHHHHTTE------EEEECCCCSSEEEEEEEETT--EEEE-------TTSCE------
T ss_pred HHHHhhcCCeEEEEcCCcCCHHHHHHHhCC------cccCCCCCCCcceEEEEeCC--eeec-------cccch------
Confidence 999887789999999999999999999863 34667778888776654321 0110 00000
Q ss_pred hhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc----------------
Q psy6275 267 LANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL---------------- 330 (391)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~---------------- 330 (391)
. ........+.+.+. .++++||||+++++|+.++..|.+.
T Consensus 221 --------~--------------~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 276 (720)
T 2zj8_A 221 --------D--------------RFSSWEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNEL 276 (720)
T ss_dssp --------E--------------ECSSTTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHH
T ss_pred --------h--------------hhhHHHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHH
Confidence 0 00012233333333 3469999999999999999998752
Q ss_pred -------------------------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 331 -------------------------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 331 -------------------------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+-...++|..+.+.|++ .++++++|+ ++++|||++.
T Consensus 277 ~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~-----------~l~~Gvdip~ 338 (720)
T 2zj8_A 277 ADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATP-----------TLSAGINTPA 338 (720)
T ss_dssp HHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECS-----------TTGGGCCCCB
T ss_pred HHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECc-----------HhhccCCCCc
Confidence 11234678888888887 668888885 8999999863
No 18
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=9.3e-35 Score=300.75 Aligned_cols=287 Identities=23% Similarity=0.371 Sum_probs=221.5
Q ss_pred CCcccc--cccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q psy6275 37 DLEYQP--LAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113 (391)
Q Consensus 37 ~~~~~~--l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~ 113 (391)
+|+.++ +++.+.+.++..||+ |+++|.++++.+.++++++++||||||||+++.+++++.+..+++++|++|+++|+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 466677 888888889999995 99999999999999999999999999999999999998888889999999999999
Q ss_pred HHHHHHHHHhcc---cceeeeCCcccCC----CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 114 NQKYREFEEQFK---DVGLITGDVTINP----SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 114 ~q~~~~~~~~~~---~v~~~~g~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
.|+++.++.+.. .++.++|+..... .++|+|+||+++..++.+....+++++++|+||+|++.+++++..++.
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ 161 (702)
T 2p6r_A 82 GEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEI 161 (702)
T ss_dssp HHHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHH
Confidence 999999964433 6777888766543 689999999999999888777788999999999999998888998888
Q ss_pred HHHHh---CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHH
Q psy6275 187 TLILL---SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVA 263 (391)
Q Consensus 187 i~~~~---~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 263 (391)
++..+ +++.|+++||||+++..++++|++. .++....++.+++..++..+ ..... +........
T Consensus 162 ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~------~~~~~~~r~~~l~~~~~~~~--~~~~~-~~~~~~~~~---- 228 (702)
T 2p6r_A 162 LVTKMRRMNKALRVIGLSATAPNVTEIAEWLDA------DYYVSDWRPVPLVEGVLCEG--TLELF-DGAFSTSRR---- 228 (702)
T ss_dssp HHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTC------EEEECCCCSSCEEEEEECSS--EEEEE-ETTEEEEEE----
T ss_pred HHHHHHhcCcCceEEEECCCcCCHHHHHHHhCC------CcccCCCCCccceEEEeeCC--eeecc-Ccchhhhhh----
Confidence 87765 5689999999999988999999862 35677788888887665322 11110 000000000
Q ss_pred HHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc-------------
Q psy6275 264 MNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL------------- 330 (391)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~------------- 330 (391)
......+.+.+. .++++||||+++++|+.++..|.+.
T Consensus 229 ----------------------------~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~ 278 (702)
T 2p6r_A 229 ----------------------------VKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKA 278 (702)
T ss_dssp ----------------------------CCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHH
T ss_pred ----------------------------hhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 001223333332 3469999999999999999998742
Q ss_pred -------------------------CCCChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 331 -------------------------NFNETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 331 -------------------------g~~~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+-...++|..+.+.|++ .++++++|+ ++++|||++.
T Consensus 279 i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~-----------~l~~Gidip~ 340 (702)
T 2p6r_A 279 ILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATP-----------TLAAGVNLPA 340 (702)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECS-----------TTTSSSCCCB
T ss_pred HHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECc-----------HHhccCCCCc
Confidence 11223778888888887 668888885 8999999864
No 19
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.4e-35 Score=286.08 Aligned_cols=283 Identities=17% Similarity=0.216 Sum_probs=158.4
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
..|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+. .+++++|++|+++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 100 (394)
T 1fuu_A 21 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 100 (394)
T ss_dssp CSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHH
Confidence 4688999999999999999996 99999999999999999999999999999999999998774 3679999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
|+.|+.+.+.++.. .+..++|+.... ..++|+|+||+++...+......+.+++++|+||||++.++++.
T Consensus 101 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~ 180 (394)
T 1fuu_A 101 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFK 180 (394)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcH
Confidence 99999999998875 455667765432 15789999999999988877777889999999999999887788
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCC--CcCceEeeccCCCCCeeeeecCchhhhhc
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR--PTPLQHYLFPNGGDGIHLIVDDNKFKEHN 259 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~~v~~~~~~~~~ 259 (391)
..+..++..++...|++++|||+++. +.+++......+..+...... ...+.++++.+....
T Consensus 181 ~~~~~~~~~~~~~~~~i~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 244 (394)
T 1fuu_A 181 EQIYQIFTLLPPTTQVVLLSATMPND--VLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEE-------------- 244 (394)
T ss_dssp HHHHHHHHHSCTTCEEEEECSSCCHH--HHHHHHHHCCSCEEEEECC---------------------------------
T ss_pred HHHHHHHHhCCCCceEEEEEEecCHH--HHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchh--------------
Confidence 88888888888899999999999765 222222333445444333221 112233322211100
Q ss_pred hHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----
Q psy6275 260 YQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET---- 335 (391)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~---- 335 (391)
.+...+...+.....+++||||+++++++.+++.|++.++.+.
T Consensus 245 ---------------------------------~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~ 291 (394)
T 1fuu_A 245 ---------------------------------YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 291 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------hHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeC
Confidence 0112333334444456899999999999999999988765542
Q ss_pred ----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 336 ----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 336 ----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.+|..+.+.|++ ...++++| +++++|+|++..
T Consensus 292 ~~~~~~r~~~~~~f~~~~~~vlv~T-----------~~~~~Gldi~~~ 328 (394)
T 1fuu_A 292 DLPQQERDTIMKEFRSGSSRILIST-----------DLLARGIDVQQV 328 (394)
T ss_dssp ------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHCCCCcEEEEC-----------ChhhcCCCcccC
Confidence 556667777765 44555555 699999999753
No 20
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.3e-34 Score=268.11 Aligned_cols=265 Identities=19% Similarity=0.179 Sum_probs=204.5
Q ss_pred ccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q psy6275 44 AQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEE 122 (391)
Q Consensus 44 ~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~ 122 (391)
++.+.+.++.+||. |+++|.++++.+.+++++++.+|||+|||++++.+++.. +.+++|++|+++|+.|+++.+++
T Consensus 2 ~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~ 78 (337)
T 2z0m_A 2 NEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVASHIRD 78 (337)
T ss_dssp CHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHHHHHHH
Confidence 45566778889997 999999999999999999999999999999999998775 78999999999999999999998
Q ss_pred hcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC
Q psy6275 123 QFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS 192 (391)
Q Consensus 123 ~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~ 192 (391)
+.. .+..++|+.... ..++|+|+||+++.+.+......+.+++++|+||||++.++++...+..++...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 158 (337)
T 2z0m_A 79 IGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTS 158 (337)
T ss_dssp HTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCT
T ss_pred HhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCC
Confidence 765 556677765431 3589999999999998887766788999999999999988888888888888888
Q ss_pred CCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhh
Q psy6275 193 DNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANA 270 (391)
Q Consensus 193 ~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 270 (391)
...+++++|||+++. ..+..++ ..+..+ ........+.+.++.+...
T Consensus 159 ~~~~~~~~SAT~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~-------------------------- 207 (337)
T 2z0m_A 159 NRKITGLFSATIPEEIRKVVKDFI----TNYEEI-EACIGLANVEHKFVHVKDD-------------------------- 207 (337)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHS----CSCEEE-ECSGGGGGEEEEEEECSSS--------------------------
T ss_pred cccEEEEEeCcCCHHHHHHHHHhc----CCceee-ecccccCCceEEEEEeChH--------------------------
Confidence 889999999999765 2233333 233322 2222233444444432211
Q ss_pred hhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc----CCCChHHHHHHHHHHH
Q psy6275 271 GDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL----NFNETEEVKLVDDVFS 346 (391)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~----g~~~~~~r~~~~~~~~ 346 (391)
....+..+.....+++||||+++++++.+++.|.+. |-....+|..+.+.|+
T Consensus 208 ------------------------~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~ 263 (337)
T 2z0m_A 208 ------------------------WRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFR 263 (337)
T ss_dssp ------------------------SHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHH
Confidence 112334455566789999999999999999999753 3345577888888887
Q ss_pred H-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 347 N-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 347 ~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+ ..+++++| +++++|+|++.
T Consensus 264 ~~~~~vlv~T-----------~~~~~Gid~~~ 284 (337)
T 2z0m_A 264 EGEYDMLITT-----------DVASRGLDIPL 284 (337)
T ss_dssp TTSCSEEEEC-----------HHHHTTCCCCC
T ss_pred cCCCcEEEEc-----------CccccCCCccC
Confidence 7 55777777 59999999974
No 21
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.6e-34 Score=292.79 Aligned_cols=279 Identities=18% Similarity=0.202 Sum_probs=205.4
Q ss_pred cccccCCCCccCCCC-CcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEEcccHHH
Q psy6275 43 LAQSKEKPAREYPFV-LDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYTTPIKAL 112 (391)
Q Consensus 43 l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl~P~~~L 112 (391)
+++.+.+.+..+||. |+|+|.++++.+. .++++++.||||+|||++|++|+++.+.. +.++||++||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 888888999999998 9999999999988 68899999999999999999999988744 3589999999999
Q ss_pred HHHHHHHHHHhcc--------cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcC-ccccCccceEEEeccccc
Q psy6275 113 SNQKYREFEEQFK--------DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRG-SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 113 ~~q~~~~~~~~~~--------~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~-~~~l~~~~~lViDE~h~~ 175 (391)
+.|+++.+.+++. .+..+.|+... ...++|+|+||+++..++.+. ...++.++++|+||||++
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 187 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 187 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHh
Confidence 9999999998753 23445555442 125899999999999888764 446789999999999999
Q ss_pred CccccchhHHHHHHHhC-------CCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC---C---cCceEeeccC
Q psy6275 176 RDKERGYVWEETLILLS-------DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR---P---TPLQHYLFPN 241 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~---~---~~i~~~~~~~ 241 (391)
+++++...+..++..++ ...|+++||||+++. ..+.. .....+..+...... + ..+.+.++..
T Consensus 188 ~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (579)
T 3sqw_A 188 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLAN---NIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264 (579)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTT---TTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred hcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHH---HHcCCCceEEEeecCccccccccccceEEEEe
Confidence 99998888888877653 267999999999876 44444 333444444332211 1 1233333221
Q ss_pred CCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhH
Q psy6275 242 GGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDC 320 (391)
Q Consensus 242 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~ 320 (391)
... ..... ..+..+...+.. ....++||||+|++.|
T Consensus 265 ~~~---------------~~~~~----------------------------~~~~~l~~~~~~~~~~~~~iVF~~t~~~~ 301 (579)
T 3sqw_A 265 EKF---------------ANSIF----------------------------AAVEHIKKQIKERDSNYKAIIFAPTVKFT 301 (579)
T ss_dssp SST---------------THHHH----------------------------HHHHHHHHHHHHTTTCCEEEEECSSHHHH
T ss_pred cch---------------hhhHH----------------------------HHHHHHHHHHhhcCCCCcEEEECCcHHHH
Confidence 100 00000 112233344443 4467999999999999
Q ss_pred HHHHHHhhcc---CCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 321 EIYAMQMAKL---NFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 321 ~~la~~L~~~---g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+.++..|.+. ++.+ ..+|..+.+.|++ ...+|++|+ ++++|||+++.
T Consensus 302 ~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----------~~~~GiDip~v 360 (579)
T 3sqw_A 302 SFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----------VGARGMDFPNV 360 (579)
T ss_dssp HHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----------GGTSSCCCTTC
T ss_pred HHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----------hhhcCCCcccC
Confidence 9999999865 4433 4678888888887 668888885 99999998753
No 22
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-34 Score=290.70 Aligned_cols=279 Identities=18% Similarity=0.203 Sum_probs=204.3
Q ss_pred cccccCCCCccCCCC-CcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhcC-------CeEEEEcccHHH
Q psy6275 43 LAQSKEKPAREYPFV-LDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQS-------QRVIYTTPIKAL 112 (391)
Q Consensus 43 l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~~-------~~vlvl~P~~~L 112 (391)
+++.+.+.+..+||. |+|+|.++++.+. .+++++++||||+|||++|++|+++.+..+ .++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 777888888899997 9999999999988 678999999999999999999999987543 489999999999
Q ss_pred HHHHHHHHHHhcc--------cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcC-ccccCccceEEEeccccc
Q psy6275 113 SNQKYREFEEQFK--------DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRG-SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 113 ~~q~~~~~~~~~~--------~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~-~~~l~~~~~lViDE~h~~ 175 (391)
+.|+++.++.+.. .+..+.|+... ...++|+|+||+++..++.+. ...++.++++|+||||++
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 9999999998643 24445565442 236899999999999888764 346788999999999999
Q ss_pred CccccchhHHHHHHHhC-------CCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC---C---cCceEeeccC
Q psy6275 176 RDKERGYVWEETLILLS-------DNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR---P---TPLQHYLFPN 241 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~-------~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~---~---~~i~~~~~~~ 241 (391)
++++++..+..++..++ .+.|+++||||+++. ..+..+ ....+..+...... + ..+.+.++..
T Consensus 239 ~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANN---IMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTT---TCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred hccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHH---hcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 99999998888877652 368999999999876 444443 33344443332211 1 1222222211
Q ss_pred CCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhH
Q psy6275 242 GGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDC 320 (391)
Q Consensus 242 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~ 320 (391)
... ..... ..+..+...+.. ....++||||+|++.|
T Consensus 316 ~~~---------------~~~~~----------------------------~~~~~l~~~~~~~~~~~~~iVF~~s~~~~ 352 (563)
T 3i5x_A 316 EKF---------------ANSIF----------------------------AAVEHIKKQIKERDSNYKAIIFAPTVKFT 352 (563)
T ss_dssp SST---------------THHHH----------------------------HHHHHHHHHHHHTTTCCEEEEECSCHHHH
T ss_pred chh---------------HhhHH----------------------------HHHHHHHHHHhhcCCCCcEEEEcCcHHHH
Confidence 100 00000 011233333333 4467999999999999
Q ss_pred HHHHHHhhcc---CCC--------ChHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 321 EIYAMQMAKL---NFN--------ETEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 321 ~~la~~L~~~---g~~--------~~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+.++..|.+. ++. ...+|..+.+.|++ ...+|++|+ ++++|||++.+
T Consensus 353 ~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----------~~~~GiDip~v 411 (563)
T 3i5x_A 353 SFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----------VGARGMDFPNV 411 (563)
T ss_dssp HHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----------GGTSSCCCTTC
T ss_pred HHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----------hhhcCCCcccC
Confidence 9999999865 443 34778888888887 668888885 99999998743
No 23
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=6.1e-33 Score=276.99 Aligned_cols=279 Identities=14% Similarity=0.154 Sum_probs=207.4
Q ss_pred CCcccccccccCCCCcc-CCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q psy6275 37 DLEYQPLAQSKEKPARE-YPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSN 114 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~-~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~ 114 (391)
+|+.+++++.+...+++ +||. |+++|.++++.+.+++++++.+|||+|||++|++|++.. +++++|++|+++|+.
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~g~~lvi~P~~aL~~ 79 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---NGLTVVVSPLISLMK 79 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---SSEEEEECSCHHHHH
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---CCCEEEECChHHHHH
Confidence 57888888888888887 8997 999999999999999999999999999999999998753 689999999999999
Q ss_pred HHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc--cc
Q psy6275 115 QKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE--RG 181 (391)
Q Consensus 115 q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~--~~ 181 (391)
|+.+.++...-.+..++|+... ....+|+++||+++............+++++|+||||++.+++ +.
T Consensus 80 q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr 159 (523)
T 1oyw_A 80 DQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFR 159 (523)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCC
T ss_pred HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccH
Confidence 9999999876677777776542 2357999999999863221111223689999999999998876 44
Q ss_pred hhHHHH---HHHhCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhh
Q psy6275 182 YVWEET---LILLSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFK 256 (391)
Q Consensus 182 ~~~~~i---~~~~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~ 256 (391)
+.+..+ ...+ ++.+++++|||+++. .++.++++. ..+.... ......++...+...
T Consensus 160 ~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~--~~~~~~~-~~~~r~~l~~~v~~~--------------- 220 (523)
T 1oyw_A 160 PEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGL--NDPLIQI-SSFDRPNIRYMLMEK--------------- 220 (523)
T ss_dssp HHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTC--CSCEEEE-CCCCCTTEEEEEEEC---------------
T ss_pred HHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCC--CCCeEEe-CCCCCCceEEEEEeC---------------
Confidence 444433 3333 468999999999775 556776642 2333222 222222333222210
Q ss_pred hhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--
Q psy6275 257 EHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE-- 334 (391)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~-- 334 (391)
.+....+.+.+....++++||||+|+++|+.+++.|.+.|+.+
T Consensus 221 -----------------------------------~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~ 265 (523)
T 1oyw_A 221 -----------------------------------FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAA 265 (523)
T ss_dssp -----------------------------------SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred -----------------------------------CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEE
Confidence 0234466777777677799999999999999999999876653
Q ss_pred ------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 335 ------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 335 ------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
.++|..+.+.|++ ...++++|+ ++++|||++ |.++|..
T Consensus 266 ~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----------a~~~GiD~p~v~~VI~~~~p~s 316 (523)
T 1oyw_A 266 YHAGLENNVRADVQEKFQRDDLQIVVATV-----------AFGMGINKPNVRFVVHFDIPRN 316 (523)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCSEEEECT-----------TSCTTTCCTTCCEEEESSCCSS
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEEec-----------hhhCCCCccCccEEEEECCCCC
Confidence 3778888888887 667888885 899999986 4566644
No 24
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.2e-33 Score=271.95 Aligned_cols=252 Identities=13% Similarity=0.133 Sum_probs=188.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc---cceee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK---DVGLI 130 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~~ 130 (391)
+||+|+++|.++++.+.++++++++||||+|||++|+.+++.....+++++|++|+++|+.|+++.++.+.. .+..+
T Consensus 18 ~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~ 97 (414)
T 3oiy_A 18 FGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGF 97 (414)
T ss_dssp HSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEEC
T ss_pred cCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEE
Confidence 578899999999999999999999999999999999999988888899999999999999999999999764 67778
Q ss_pred eCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-----------cccchh-HHHH
Q psy6275 131 TGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD-----------KERGYV-WEET 187 (391)
Q Consensus 131 ~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~-----------~~~~~~-~~~i 187 (391)
+|+... ...++|+|+||+++.+++.. ..+.+++++|+||||++.+ .++... +..+
T Consensus 98 ~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i 175 (414)
T 3oiy_A 98 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 175 (414)
T ss_dssp CTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHH
T ss_pred ECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHH
Confidence 887764 22489999999999877654 4466899999999997653 445555 6777
Q ss_pred HHHhC-----------CCCcEEEEccc-CCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCc
Q psy6275 188 LILLS-----------DNVRFVFLSAT-IPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN 253 (391)
Q Consensus 188 ~~~~~-----------~~~~~i~~SAT-~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~ 253 (391)
+..++ ...|++++||| .+.. ..+...+... .+.........+.+.++..+
T Consensus 176 ~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~----------- 239 (414)
T 3oiy_A 176 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNF-----TVGRLVSVARNITHVRISSR----------- 239 (414)
T ss_dssp HHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSC-----CSSCCCCCCCSEEEEEESSC-----------
T ss_pred HHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhcc-----CcCccccccccchheeeccC-----------
Confidence 77765 78999999999 4443 1232222110 11111122234555554321
Q ss_pred hhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC
Q psy6275 254 KFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN 333 (391)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~ 333 (391)
+...+.+.+...+ +++||||++++.|+.++..|.+.|+.
T Consensus 240 ----------------------------------------~~~~l~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~~~~ 278 (414)
T 3oiy_A 240 ----------------------------------------SKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFN 278 (414)
T ss_dssp ----------------------------------------CHHHHHHHHHHHC-SSEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred ----------------------------------------HHHHHHHHHHHcC-CCEEEEECCHHHHHHHHHHHHHcCCc
Confidence 1234455555544 69999999999999999999987766
Q ss_pred Ch-----HHHHHHHHHHHH-Hhhhcch----hhccCcchHhHHHHHHhhhhhcc
Q psy6275 334 ET-----EEVKLVDDVFSN-AMDVLSE----EDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 334 ~~-----~~r~~~~~~~~~-~~~~l~~----~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+. .+|. .+.|++ ..++|++ |+ ++++|||++.
T Consensus 279 ~~~~~h~~~r~--~~~f~~g~~~vLvat~s~T~-----------~~~~GiDip~ 319 (414)
T 3oiy_A 279 VGETWSEFEKN--FEDFKVGKINILIGVQAYYG-----------KLTRGVDLPE 319 (414)
T ss_dssp EEESSSCHHHH--HHHHHTTSCSEEEEECCTTC-----------CCCCCCCCTT
T ss_pred eehhhcCcchH--HHHHhCCCCeEEEEecCcCc-----------hhhccCcccc
Confidence 53 3444 556655 6788888 75 8999999987
No 25
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-33 Score=280.01 Aligned_cols=280 Identities=16% Similarity=0.206 Sum_probs=184.2
Q ss_pred CcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 38 LEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 38 ~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
+...++++.+.+.+...||. |+++|.++++.+.++ +++++.+|||+|||++|+++++..+.. ++++||++|+++
T Consensus 121 ~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~ 200 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRE 200 (508)
T ss_dssp ------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHH
T ss_pred ccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHH
Confidence 34456677788888889997 999999999999887 999999999999999999999998754 459999999999
Q ss_pred HHHHHHHHHHHhccc--c--eeeeCCccc---CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-cccchh
Q psy6275 112 LSNQKYREFEEQFKD--V--GLITGDVTI---NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD-KERGYV 183 (391)
Q Consensus 112 L~~q~~~~~~~~~~~--v--~~~~g~~~~---~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~-~~~~~~ 183 (391)
|+.|+++.+++++.. + ....++... ...++|+|+||+++...+......+.+++++|+||||++.+ .++...
T Consensus 201 L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~ 280 (508)
T 3fho_A 201 LARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQ 280 (508)
T ss_dssp HHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHH
T ss_pred HHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHH
Confidence 999999999998762 2 222222221 23679999999999998888777788999999999999876 567777
Q ss_pred HHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeeeCCC--CcCceEeeccCCCCCeeeeecCchhhhhch
Q psy6275 184 WEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYTDYR--PTPLQHYLFPNGGDGIHLIVDDNKFKEHNY 260 (391)
Q Consensus 184 ~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (391)
+..+...++.+.|+++||||+++. ..+..++. ..+..+...... ...+.+.+......
T Consensus 281 ~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------------- 341 (508)
T 3fho_A 281 SMRIKHLLPRNTQIVLFSATFSERVEKYAERFA---PNANEIRLKTEELSVEGIKQLYMDCQSE---------------- 341 (508)
T ss_dssp HHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHS---TTCEEECCCCCC----CCCCEEEEC--C----------------
T ss_pred HHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhc---CCCeEEEeccccCCcccceEEEEECCch----------------
Confidence 888888888899999999999875 55555432 333333222111 11233332221100
Q ss_pred HHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh-----
Q psy6275 261 QVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----- 335 (391)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----- 335 (391)
..+...+...+.....+++||||+++++|+.++..|.+.++.+.
T Consensus 342 -------------------------------~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~ 390 (508)
T 3fho_A 342 -------------------------------EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGN 390 (508)
T ss_dssp -------------------------------HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC--
T ss_pred -------------------------------HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 01223444444445567999999999999999999988765542
Q ss_pred ---HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 336 ---EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 336 ---~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
.+|..+.+.|++ ..++|++|+ ++++|||++..
T Consensus 391 ~~~~~R~~il~~f~~g~~~VLVaT~-----------~l~~GiDip~v 426 (508)
T 3fho_A 391 LEGAQRDAIMDSFRVGTSKVLVTTN-----------VIARGIDVSQV 426 (508)
T ss_dssp ---CTTGGGTHHHHSSSCCCCEECC----------------CCCTTC
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCC-----------hhhcCCCccCC
Confidence 456677777776 567777774 99999999743
No 26
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.1e-32 Score=278.13 Aligned_cols=281 Identities=16% Similarity=0.196 Sum_probs=204.6
Q ss_pred cccccccccCCCCcc-CCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q psy6275 39 EYQPLAQSKEKPARE-YPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQK 116 (391)
Q Consensus 39 ~~~~l~~~~~~~~~~-~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~ 116 (391)
..+++++.+...++. +||. |+|+|.++|+.+.+++++++.+|||+|||++|++|++. .++++||++|+++|+.|+
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~ 100 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQ 100 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHH
Confidence 346777778877777 6997 99999999999999999999999999999999999865 478999999999999999
Q ss_pred HHHHHHhcccceeeeCCccc-------------CCCCCEEEEcHHHHH------HHHhcCccccCccceEEEecccccCc
Q psy6275 117 YREFEEQFKDVGLITGDVTI-------------NPSSSCLIMTTEILR------NMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 117 ~~~~~~~~~~v~~~~g~~~~-------------~~~~~I~v~Tp~~l~------~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
.+.+....-.+..++|+... ....+|+|+||+++. +.+.. ...+..++++|+||||++.+
T Consensus 101 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~~~~~i~~iViDEAH~is~ 179 (591)
T 2v1x_A 101 LMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AYEARRFTRIAVDEVHCCSQ 179 (591)
T ss_dssp HHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HHHTTCEEEEEEETGGGGST
T ss_pred HHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hhhccCCcEEEEECcccccc
Confidence 99999986677777776542 346899999999874 22222 23466899999999999998
Q ss_pred cc--cchhHHH--HHHHhCCCCcEEEEcccCCCh--HHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeec
Q psy6275 178 KE--RGYVWEE--TLILLSDNVRFVFLSATIPNA--SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVD 251 (391)
Q Consensus 178 ~~--~~~~~~~--i~~~~~~~~~~i~~SAT~~~~--~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~ 251 (391)
++ +.+.+.. .+....++.++++||||+++. .++..++.. .. ..++.......++.+.+...+..
T Consensus 180 ~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~--~~-~~~~~~~~~r~nl~~~v~~~~~~------- 249 (591)
T 2v1x_A 180 WGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCI--EK-CFTFTASFNRPNLYYEVRQKPSN------- 249 (591)
T ss_dssp TCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTC--CS-CEEEECCCCCTTEEEEEEECCSS-------
T ss_pred cccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCC--CC-cEEEecCCCCcccEEEEEeCCCc-------
Confidence 76 5555543 333344579999999999865 556666542 12 22333332223333322211100
Q ss_pred CchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH-cCCCcEEEEEcchhhHHHHHHHhhcc
Q psy6275 252 DNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME-RNLAPVIVFSFSKKDCEIYAMQMAKL 330 (391)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIF~~t~~~~~~la~~L~~~ 330 (391)
. ...+..+.+.+.. ..++++||||+|++.|+.++..|...
T Consensus 250 --------~-------------------------------~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~ 290 (591)
T 2v1x_A 250 --------T-------------------------------EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL 290 (591)
T ss_dssp --------H-------------------------------HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred --------H-------------------------------HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC
Confidence 0 0123355555543 24679999999999999999999987
Q ss_pred CCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc------cCCCCcc
Q psy6275 331 NFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH------HGVKPYG 383 (391)
Q Consensus 331 g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~------h~~~~~~ 383 (391)
|+.+ .++|..+.+.|+. ...++++|+ ++++|||++ |.++|..
T Consensus 291 g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----------a~~~GID~p~V~~VI~~~~p~s 347 (591)
T 2v1x_A 291 GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----------AFGMGIDKPDVRFVIHHSMSKS 347 (591)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----------TSCTTCCCSCEEEEEESSCCSS
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----------hhhcCCCcccccEEEEeCCCCC
Confidence 6654 3678888888877 668888885 899999986 4666643
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=1.9e-31 Score=285.18 Aligned_cols=252 Identities=13% Similarity=0.139 Sum_probs=192.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc---ccee
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK---DVGL 129 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~ 129 (391)
.+||+|+++|.++++.+.+|++++++||||||||++++.+++..+..+.++||++||++|+.|+++.++.+.. .+..
T Consensus 74 ~~gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~ 153 (1104)
T 4ddu_A 74 KFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFG 153 (1104)
T ss_dssp HSSSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEE
T ss_pred hcCCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEE
Confidence 4688999999999999999999999999999999999999988888899999999999999999999999653 6777
Q ss_pred eeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-----------cccchh-HHH
Q psy6275 130 ITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD-----------KERGYV-WEE 186 (391)
Q Consensus 130 ~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~-----------~~~~~~-~~~ 186 (391)
++|+... ...++|+|+||+++.+++.. ..+.+++++|+||||++.+ +++... +..
T Consensus 154 l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~ 231 (1104)
T 4ddu_A 154 FYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRK 231 (1104)
T ss_dssp ECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHH
Confidence 8888765 23489999999999877664 4567999999999987654 555555 677
Q ss_pred HHHHhC-----------CCCcEEEEcccC-CCh-H-HH-HHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeec
Q psy6275 187 TLILLS-----------DNVRFVFLSATI-PNA-S-QF-AQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVD 251 (391)
Q Consensus 187 i~~~~~-----------~~~~~i~~SAT~-~~~-~-~~-~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~ 251 (391)
++..++ .+.|+++||||+ +.. . .+ ..++. +.+......+..+.+.++.++
T Consensus 232 il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~------i~v~~~~~~~~~i~~~~~~~~--------- 296 (1104)
T 4ddu_A 232 AFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN------FTVGRLVSVARNITHVRISSR--------- 296 (1104)
T ss_dssp HHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC------CCCCBCCCCCCCEEEEEESCC---------
T ss_pred HHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee------EEeccCCCCcCCceeEEEecC---------
Confidence 777776 789999999994 443 1 22 22221 111222223334555555331
Q ss_pred CchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccC
Q psy6275 252 DNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLN 331 (391)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g 331 (391)
+...+.+.+...+ +++||||++++.|+.++..|...|
T Consensus 297 ------------------------------------------k~~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~g 333 (1104)
T 4ddu_A 297 ------------------------------------------SKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFK 333 (1104)
T ss_dssp ------------------------------------------CHHHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHTT
T ss_pred ------------------------------------------HHHHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhCC
Confidence 1234555555544 699999999999999999999887
Q ss_pred CCCh-----HHHHHHHHHHHH-Hhhhcch----hhccCcchHhHHHHHHhhhhhcc
Q psy6275 332 FNET-----EEVKLVDDVFSN-AMDVLSE----EDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 332 ~~~~-----~~r~~~~~~~~~-~~~~l~~----~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
+.+. +++. .+.|++ ..++|++ | ++++||||+++
T Consensus 334 ~~~~~~lhg~rr~--l~~F~~G~~~VLVatas~T-----------dvlarGIDip~ 376 (1104)
T 4ddu_A 334 FNVGETWSEFEKN--FEDFKVGKINILIGVQAYY-----------GKLTRGVDLPE 376 (1104)
T ss_dssp CCEEESSSSHHHH--HHHHHHTSCSEEEEETTTH-----------HHHCCSCCCTT
T ss_pred CCeeeEecCcHHH--HHHHHCCCCCEEEEecCCC-----------CeeEecCcCCC
Confidence 7664 3444 556655 6788887 6 59999999987
No 28
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.97 E-value=6.9e-32 Score=243.45 Aligned_cols=189 Identities=16% Similarity=0.137 Sum_probs=162.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh--------cCCeEEEE
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--------QSQRVIYT 106 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~--------~~~~vlvl 106 (391)
.+|..+++++.+.+.+.++||. |+++|.++++.+.+|++++++||||+|||++|++|++..+. .+++++|+
T Consensus 29 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil 108 (242)
T 3fe2_A 29 LNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 108 (242)
T ss_dssp SSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEE
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEE
Confidence 4788899999999999999998 99999999999999999999999999999999999998775 36789999
Q ss_pred cccHHHHHHHHHHHHHhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 107 TPIKALSNQKYREFEEQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 107 ~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+|+++|+.|+++.++++.. .+..++|+.... ..++|+|+||+++.+++......+.+++++|+||||++
T Consensus 109 ~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l 188 (242)
T 3fe2_A 109 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRM 188 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHH
Confidence 9999999999999988765 455667765432 35799999999999999887778899999999999999
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEeee
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYT 227 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~ 227 (391)
.+++++..+..++..++.+.|+++||||+++. ..+++ .+..+|..+...
T Consensus 189 ~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~---~~l~~~~~i~~~ 238 (242)
T 3fe2_A 189 LDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAE---DFLKDYIHINIG 238 (242)
T ss_dssp HHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHH---HHCSSCEEEEEC
T ss_pred hhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHH---HHCCCCEEEEec
Confidence 99889999999999998899999999999876 44444 344566665543
No 29
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=239.44 Aligned_cols=186 Identities=21% Similarity=0.169 Sum_probs=156.3
Q ss_pred CCcc-cccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEEE
Q psy6275 37 DLEY-QPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVIY 105 (391)
Q Consensus 37 ~~~~-~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vlv 105 (391)
+|.. +++++.+.+.+.+.||. |+++|.++++.+.+++++++.||||+|||++|++|++..+. .+.+++|
T Consensus 20 ~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~li 99 (228)
T 3iuy_A 20 RFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLV 99 (228)
T ss_dssp SHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEE
T ss_pred hHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEE
Confidence 4555 68888999999999996 99999999999999999999999999999999999988763 4678999
Q ss_pred EcccHHHHHHHHHHHHHhcc---cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc
Q psy6275 106 TTPIKALSNQKYREFEEQFK---DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 106 l~P~~~L~~q~~~~~~~~~~---~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
++|+++|+.|+.+.++++.. .+..++|+.... ..++|+|+||+++.+++......+.+++++|+||||++
T Consensus 100 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~ 179 (228)
T 3iuy_A 100 LTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKM 179 (228)
T ss_dssp ECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHH
T ss_pred EeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHH
Confidence 99999999999999999854 555666665543 34799999999999998887777899999999999999
Q ss_pred CccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 176 RDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
.++++...+..++..++.+.|+++||||+++. +.+.. .+..+|..++
T Consensus 180 ~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~---~~l~~p~~i~ 227 (228)
T 3iuy_A 180 LDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLAL---SYLKDPMIVY 227 (228)
T ss_dssp HHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHH---TTCSSCEEEE
T ss_pred hccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHH---HHCCCCEEEe
Confidence 98889999999999999899999999999876 44443 4455666554
No 30
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=6.1e-31 Score=231.15 Aligned_cols=185 Identities=18% Similarity=0.244 Sum_probs=158.1
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHH
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKAL 112 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L 112 (391)
+|+.+++++.+.+.+.++||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+.. +.+++|++|+++|
T Consensus 4 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 83 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTREL 83 (206)
T ss_dssp SGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHH
Confidence 588899999999999999996 999999999999999999999999999999999999988643 5689999999999
Q ss_pred HHHHHHHHHHhcc-----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc
Q psy6275 113 SNQKYREFEEQFK-----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 113 ~~q~~~~~~~~~~-----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~ 180 (391)
+.|+++.+.++.. .+...+|+... ...++|+|+||+++.+.+.+....+.+++++|+||||++.+.++
T Consensus 84 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~ 163 (206)
T 1vec_A 84 ALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDF 163 (206)
T ss_dssp HHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTT
T ss_pred HHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCc
Confidence 9999999998864 45556776543 34679999999999999988777788999999999999988888
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCee
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCH 223 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~ 223 (391)
...+..++..++.+.|+++||||+++. +.+++..+..+|..
T Consensus 164 ~~~l~~i~~~~~~~~~~l~~SAT~~~~--~~~~~~~~l~~p~~ 204 (206)
T 1vec_A 164 VQIMEDIILTLPKNRQILLYSATFPLS--VQKFMNSHLEKPYE 204 (206)
T ss_dssp HHHHHHHHHHSCTTCEEEEEESCCCHH--HHHHHHHHCSSCEE
T ss_pred HHHHHHHHHhCCccceEEEEEeeCCHH--HHHHHHHHcCCCeE
Confidence 888899999898889999999999765 33333344455544
No 31
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.97 E-value=2.7e-31 Score=235.90 Aligned_cols=191 Identities=17% Similarity=0.205 Sum_probs=160.9
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+.++||. |+++|.++++.+.+++++++++|||+|||++|++|++..+. .+.+++|++|+++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 83 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRE 83 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHH
Confidence 3588889999999999999997 99999999999999999999999999999999999998875 3579999999999
Q ss_pred HHHHHHHHHHHhcc--------cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC
Q psy6275 112 LSNQKYREFEEQFK--------DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 112 L~~q~~~~~~~~~~--------~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
|+.|+++.++++.. .+..+.|+... ...++|+|+||+++.+.+......+.+++++|+||||++.
T Consensus 84 L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~ 163 (219)
T 1q0u_A 84 LATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLML 163 (219)
T ss_dssp HHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHH
T ss_pred HHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHh
Confidence 99999999988864 34446665442 2357899999999999988877778899999999999998
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeC
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~ 228 (391)
++++...+..++..++.+.|+++||||+++. +.+++..+..+|..+....
T Consensus 164 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~--~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 164 DMGFITDVDQIAARMPKDLQMLVFSATIPEK--LKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp HTTCHHHHHHHHHTSCTTCEEEEEESCCCGG--GHHHHHHHCSSCEEEECC-
T ss_pred hhChHHHHHHHHHhCCcccEEEEEecCCCHH--HHHHHHHHcCCCeEEEeec
Confidence 8888888888998888889999999999765 4444445566776665443
No 32
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.97 E-value=1.7e-30 Score=235.84 Aligned_cols=189 Identities=17% Similarity=0.177 Sum_probs=158.6
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc------------CCe
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------------SQR 102 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~------------~~~ 102 (391)
.+|+.+++++.+.+.+...||. |+++|.++++.+.+++++++++|||+|||++|++|++..+.. +++
T Consensus 23 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 102 (253)
T 1wrb_A 23 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPK 102 (253)
T ss_dssp CSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCce
Confidence 4689999999999999999997 999999999999999999999999999999999999987742 358
Q ss_pred EEEEcccHHHHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEec
Q psy6275 103 VIYTTPIKALSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDE 171 (391)
Q Consensus 103 vlvl~P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE 171 (391)
+||++|+++|+.|+++.++++.. .+..++|+... ...++|+|+||+++.+++......+.+++++|+||
T Consensus 103 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDE 182 (253)
T 1wrb_A 103 CLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDE 182 (253)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEET
T ss_pred EEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeC
Confidence 99999999999999999998865 34556666543 24679999999999999988777788999999999
Q ss_pred ccccCccccchhHHHHHHHh--CC--CCcEEEEcccCCCh-HHHHHHhccccCCCeeEeee
Q psy6275 172 IHYMRDKERGYVWEETLILL--SD--NVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYT 227 (391)
Q Consensus 172 ~h~~~~~~~~~~~~~i~~~~--~~--~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~~ 227 (391)
||++.+++++..+..++..+ +. +.|+++||||+++. ..+++ .+..+|..+...
T Consensus 183 ah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~---~~l~~~~~i~~~ 240 (253)
T 1wrb_A 183 ADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAA---DFLYNYIFMTVG 240 (253)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHH---HHCSSCEEEEEC
T ss_pred HHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHH---HHcCCCEEEEEC
Confidence 99999888888888888853 33 68999999999766 44444 344566665443
No 33
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.97 E-value=6.4e-31 Score=244.36 Aligned_cols=187 Identities=17% Similarity=0.165 Sum_probs=157.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcC--CcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEccc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENN--QSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPI 109 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~--~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~ 109 (391)
.+|..+++++.+.+.+..+||. |+++|.++++.+..+ ++++++||||||||++|++|++..+.. ++++||++||
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Pt 171 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPT 171 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCc
Confidence 4788899999999999999997 999999999999887 999999999999999999999998743 4589999999
Q ss_pred HHHHHHHHHHHHHhcc-----cceeeeCCcccC----CCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCc-c
Q psy6275 110 KALSNQKYREFEEQFK-----DVGLITGDVTIN----PSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRD-K 178 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~-----~v~~~~g~~~~~----~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~-~ 178 (391)
++|+.|++..++.+.. .+....|+.... ..++|+|+||+++++++.+ ....+.+++++|+||||++++ .
T Consensus 172 reLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~ 251 (300)
T 3fmo_B 172 YELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ 251 (300)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHST
T ss_pred HHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhcc
Confidence 9999999999998875 345566655432 3568999999999999865 445678999999999999987 6
Q ss_pred ccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 179 ERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 179 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
++...+..++..++.++|+++||||+++. ..++. .+..+|..+.
T Consensus 252 ~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~---~~l~~p~~i~ 296 (300)
T 3fmo_B 252 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQ---KVVPDPNVIK 296 (300)
T ss_dssp THHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHH---HHSSSCEEEE
T ss_pred CcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHH---HHCCCCeEEE
Confidence 77788888888888899999999999876 55555 3445666554
No 34
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.97 E-value=4.1e-31 Score=237.64 Aligned_cols=187 Identities=18% Similarity=0.235 Sum_probs=157.0
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+. .+.+++|++|+++
T Consensus 30 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 109 (237)
T 3bor_A 30 DNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRE 109 (237)
T ss_dssp CSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHH
Confidence 4689999999999999999998 99999999999999999999999999999999999999875 4679999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcccC--------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTIN--------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~~--------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+++.++.+.. .+....|+.... ..++|+|+||+++.+++......+..++++|+||||++.+++
T Consensus 110 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~ 189 (237)
T 3bor_A 110 LAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG 189 (237)
T ss_dssp HHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccC
Confidence 99999999999875 344556655432 237999999999999998877778899999999999998888
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
+...+..++..++...|++++|||+++. ..+.. .+..+|..+.
T Consensus 190 ~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~---~~l~~p~~i~ 233 (237)
T 3bor_A 190 FKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTK---KFMRDPIRIL 233 (237)
T ss_dssp CHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHH---HHCSSCEEEC
T ss_pred cHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHH---HHCCCCEEEE
Confidence 8888888998888899999999999865 44444 3444665554
No 35
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.97 E-value=6.6e-31 Score=235.19 Aligned_cols=188 Identities=17% Similarity=0.155 Sum_probs=161.1
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+.+.||. |+++|.++++.+.+++++++.+|||+|||++|++|++..+. .+.+++|++|+++
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 103 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTRE 103 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHH
Confidence 4688899999999999999997 99999999999999999999999999999999999988763 3579999999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCccc------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccc-
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTI------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKE- 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~- 179 (391)
|+.|+++.++++.. .+..++|+... ..+++|+|+||+++.+++......+.+++++|+||||++.+++
T Consensus 104 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~ 183 (230)
T 2oxc_A 104 IAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGS 183 (230)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTS
T ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcc
Confidence 99999999999864 45667776543 2368999999999999988777778899999999999998876
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEe
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~ 225 (391)
+...+..++..++...|++++|||+++. +.+++..+..+|..+.
T Consensus 184 ~~~~~~~i~~~~~~~~~~l~lSAT~~~~--~~~~~~~~~~~p~~i~ 227 (230)
T 2oxc_A 184 FQEQINWIYSSLPASKQMLAVSATYPEF--LANALTKYMRDPTFVR 227 (230)
T ss_dssp SHHHHHHHHHHSCSSCEEEEEESCCCHH--HHHHHTTTCSSCEEEC
T ss_pred hHHHHHHHHHhCCCCCeEEEEEeccCHH--HHHHHHHHcCCCeEEE
Confidence 8888888999998889999999998755 5556656666666543
No 36
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=1.4e-30 Score=229.02 Aligned_cols=185 Identities=19% Similarity=0.204 Sum_probs=159.0
Q ss_pred CCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEccc
Q psy6275 37 DLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTPI 109 (391)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P~ 109 (391)
+|+.+++++.+.+.+...||. |+++|.++++.+.+++++++.+|||+|||++|+++++..+. .+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 478889999999999999996 99999999999999999999999999999999999998863 46789999999
Q ss_pred HHHHHHHHHHHHHhcc--cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCcccc
Q psy6275 110 KALSNQKYREFEEQFK--DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER 180 (391)
Q Consensus 110 ~~L~~q~~~~~~~~~~--~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~ 180 (391)
++|+.|+++.++++.. .+..++|+.... ..++|+|+||+++..++......+.+++++|+||||++.+.++
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 161 (207)
T 2gxq_A 82 RELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGF 161 (207)
T ss_dssp HHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccch
Confidence 9999999999999976 455677765431 3589999999999999888777788999999999999988888
Q ss_pred chhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeE
Q psy6275 181 GYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHV 224 (391)
Q Consensus 181 ~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v 224 (391)
...+..++..++.+.|+++||||+++. ..+.++ +..+|..+
T Consensus 162 ~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~---~~~~p~~i 203 (207)
T 2gxq_A 162 EEEVEALLSATPPSRQTLLFSATLPSWAKRLAER---YMKNPVLI 203 (207)
T ss_dssp HHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHH---HCSSCEEE
T ss_pred HHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHH---HcCCCeEE
Confidence 888888888888889999999999876 455553 34456554
No 37
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=8.1e-30 Score=256.73 Aligned_cols=149 Identities=21% Similarity=0.270 Sum_probs=119.7
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHhcc----
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYTTPIKALSNQKYREFEEQFK---- 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl~P~~~L~~q~~~~~~~~~~---- 125 (391)
.++|+++|.++++.+.+++++++++|||+|||++|++|+++.+.. ++++||++|+++|+.|+.+.+.+++.
T Consensus 5 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 84 (556)
T 4a2p_A 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 84 (556)
T ss_dssp ---CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 457999999999999999999999999999999999999988865 78999999999999999999999864
Q ss_pred cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCccccchhHHHHHH-----Hh-
Q psy6275 126 DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDKERGYVWEETLI-----LL- 191 (391)
Q Consensus 126 ~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~~~~~~~~~i~~-----~~- 191 (391)
.+..++|+..... .++|+|+||+++.+.+..... .+.+++++|+||||++.+++. +..++. .+
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~---~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQKFN 161 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH---HHHHHHHHHHHHHC
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch---HHHHHHHHHHhhhc
Confidence 5677888775443 478999999999999887766 788999999999999986642 222221 11
Q ss_pred --CCCCcEEEEcccCCC
Q psy6275 192 --SDNVRFVFLSATIPN 206 (391)
Q Consensus 192 --~~~~~~i~~SAT~~~ 206 (391)
.+..++++||||++.
T Consensus 162 ~~~~~~~~l~lSAT~~~ 178 (556)
T 4a2p_A 162 SASQLPQILGLTASVGV 178 (556)
T ss_dssp C---CCEEEEEESCCCC
T ss_pred ccCCCCeEEEEeCCccc
Confidence 356899999999954
No 38
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.97 E-value=1.8e-30 Score=231.28 Aligned_cols=188 Identities=19% Similarity=0.215 Sum_probs=157.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh---cCCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK---QSQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~---~~~~vlvl~P~~~ 111 (391)
.+|+.+++++.+.+.+..+||. |+++|.++++.+.+++++++.+|||+|||++|++++++.+. .+.+++|++|+++
T Consensus 14 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~ 93 (224)
T 1qde_A 14 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRE 93 (224)
T ss_dssp CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHH
Confidence 4688999999999999999996 99999999999999999999999999999999999998874 3569999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
|+.|+++.+.++.. .+..++|+.... .+++|+|+||+++...+......+.+++++|+||||++.++++.
T Consensus 94 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 173 (224)
T 1qde_A 94 LALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFK 173 (224)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhH
Confidence 99999999998865 455566665432 24799999999999998887777889999999999999888888
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEee
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVY 226 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~~ 226 (391)
..+..++..++.+.|+++||||+++. ..+.+ .+..+|..+..
T Consensus 174 ~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~---~~~~~p~~i~~ 216 (224)
T 1qde_A 174 EQIYQIFTLLPPTTQVVLLSATMPNDVLEVTT---KFMRNPVRILV 216 (224)
T ss_dssp HHHHHHHHHSCTTCEEEEEESSCCHHHHHHHH---HHCSSCEEEC-
T ss_pred HHHHHHHHhCCccCeEEEEEeecCHHHHHHHH---HHCCCCEEEEe
Confidence 88888998888899999999999876 34443 34456655543
No 39
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=233.57 Aligned_cols=187 Identities=20% Similarity=0.230 Sum_probs=158.2
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-------cCCeEEEEc
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-------QSQRVIYTT 107 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-------~~~~vlvl~ 107 (391)
.+|+.+++++.+.+.+...||. |+++|.++++.+.+++++++++|||+|||++|++|++..+. .+.+++|++
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~ 104 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 104 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEe
Confidence 4688999999999999999997 99999999999999999999999999999999999988762 467999999
Q ss_pred ccHHHHHHHHHHHHHhcc----cceeeeCCcccC------CCCCEEEEcHHHHHHHHhcC-ccccCccceEEEecccccC
Q psy6275 108 PIKALSNQKYREFEEQFK----DVGLITGDVTIN------PSSSCLIMTTEILRNMLYRG-SEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 108 P~~~L~~q~~~~~~~~~~----~v~~~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~-~~~l~~~~~lViDE~h~~~ 176 (391)
|+++|+.|+++.++++.. .+..++|+.... .+++|+|+||+++...+... ...+.+++++|+||||++.
T Consensus 105 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~ 184 (236)
T 2pl3_A 105 PTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRIL 184 (236)
T ss_dssp SSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHh
Confidence 999999999999999875 456677765432 36799999999999887764 3557899999999999998
Q ss_pred ccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 177 DKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 177 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
++++...+..++..++.+.|+++||||+++. ..+++ .+..+|..+.
T Consensus 185 ~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~---~~~~~p~~i~ 231 (236)
T 2pl3_A 185 DMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLAR---LSLKNPEYVW 231 (236)
T ss_dssp HTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHH---HSCSSCEEEE
T ss_pred cCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHH---HhCCCCEEEE
Confidence 8888888999999998899999999999866 44554 3445665554
No 40
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=1e-30 Score=238.55 Aligned_cols=170 Identities=18% Similarity=0.263 Sum_probs=148.5
Q ss_pred cccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-------cCCeEEEEcccHHHHH
Q psy6275 43 LAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-------QSQRVIYTTPIKALSN 114 (391)
Q Consensus 43 l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-------~~~~vlvl~P~~~L~~ 114 (391)
+++.+.+.+..+||. |+++|.++++.+..+++++++||||+|||++|++|++..+. .+.+++|++|+++|+.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~ 140 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHH
Confidence 777888888999998 99999999999999999999999999999999999998764 4788999999999999
Q ss_pred HHHHHHHHhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCc-cccCccceEEEecccccCccccch
Q psy6275 115 QKYREFEEQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGS-EITREVGWVIFDEIHYMRDKERGY 182 (391)
Q Consensus 115 q~~~~~~~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~-~~l~~~~~lViDE~h~~~~~~~~~ 182 (391)
|+++.+++++. .+..++|+.... ..++|+|+||+++..++.... ..+.+++++|+||||++.+++++.
T Consensus 141 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~ 220 (262)
T 3ly5_A 141 QTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEE 220 (262)
T ss_dssp HHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHH
Confidence 99999999876 455677765532 357999999999998887653 567899999999999999988999
Q ss_pred hHHHHHHHhCCCCcEEEEcccCCCh-HHHHH
Q psy6275 183 VWEETLILLSDNVRFVFLSATIPNA-SQFAQ 212 (391)
Q Consensus 183 ~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~ 212 (391)
.+..++..++..+|+++||||+++. +.+++
T Consensus 221 ~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 221 ELKQIIKLLPTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp HHHHHHHHSCSSSEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEEEecCCHHHHHHHH
Confidence 9999999999899999999999876 55555
No 41
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.97 E-value=3e-30 Score=233.61 Aligned_cols=187 Identities=17% Similarity=0.189 Sum_probs=158.6
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|..+++++.+.+.+..+||. |+++|.++++.+.+++++++.||||+|||++|++|++..+.. +.+++|++|+++
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~ 122 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRE 122 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHH
T ss_pred CCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHH
Confidence 4789999999999999999996 999999999999999999999999999999999999887643 467999999999
Q ss_pred HHHHHHHHHHHhcc----cceeeeCCccc-------CCCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCccc
Q psy6275 112 LSNQKYREFEEQFK----DVGLITGDVTI-------NPSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRDKE 179 (391)
Q Consensus 112 L~~q~~~~~~~~~~----~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~~~ 179 (391)
|+.|+++.++++.. .+..+.|+... ...++|+|+||+++.+.+.. ....+.+++++|+||||++.+++
T Consensus 123 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~ 202 (249)
T 3ber_A 123 LAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMD 202 (249)
T ss_dssp HHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccC
Confidence 99999999998865 45667776542 24689999999999988876 34467899999999999998888
Q ss_pred cchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeEe
Q psy6275 180 RGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVV 225 (391)
Q Consensus 180 ~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v~ 225 (391)
+...+..++..++.+.|+++||||+++. ..+.+ .+..+|..+.
T Consensus 203 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~---~~l~~p~~i~ 246 (249)
T 3ber_A 203 FETEVDKILKVIPRDRKTFLFSATMTKKVQKLQR---AALKNPVKCA 246 (249)
T ss_dssp CHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHH---HHCSSCEEEE
T ss_pred hHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHH---HHCCCCEEEE
Confidence 8888999999888889999999999866 44444 3445666553
No 42
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=2.7e-29 Score=252.66 Aligned_cols=152 Identities=22% Similarity=0.275 Sum_probs=125.3
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHhcc----
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYTTPIKALSNQKYREFEEQFK---- 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl~P~~~L~~q~~~~~~~~~~---- 125 (391)
+|+|+++|.++++.+.+++++++++|||+|||++|++|+++.+.. ++++||++|+++|+.|+...+.+++.
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 81 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGY 81 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCc
Confidence 468999999999999999999999999999999999999998865 78999999999999999999999864
Q ss_pred cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCcccc-chhHHHHHHHh-----
Q psy6275 126 DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDKER-GYVWEETLILL----- 191 (391)
Q Consensus 126 ~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~~~-~~~~~~i~~~~----- 191 (391)
.+..++|+..... .++|+|+||+++...+..... .+.+++++|+||||++.+.+. ...+...+...
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcccc
Confidence 6777888876544 379999999999999887665 688999999999999976531 11111222221
Q ss_pred CCCCcEEEEcccCCC
Q psy6275 192 SDNVRFVFLSATIPN 206 (391)
Q Consensus 192 ~~~~~~i~~SAT~~~ 206 (391)
....++++||||+..
T Consensus 162 ~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 162 DPLPQVVGLTASVGV 176 (555)
T ss_dssp SCCCEEEEEESCCCC
T ss_pred CCCCeEEEEecCccc
Confidence 245799999999965
No 43
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=8.1e-30 Score=226.42 Aligned_cols=186 Identities=18% Similarity=0.196 Sum_probs=156.5
Q ss_pred CCCcccccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~ 111 (391)
.+|..+++++.+.+.+.+.||+ |+++|.++++.+.+++++++.+|||+|||++|+++++..+.. +.+++|++|+++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 93 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 93 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHH
Confidence 4688999999999999999998 999999999999999999999999999999999999988754 458999999999
Q ss_pred HHHHHHHHHHHhcc-----cceeeeCCccc--------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCc-
Q psy6275 112 LSNQKYREFEEQFK-----DVGLITGDVTI--------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRD- 177 (391)
Q Consensus 112 L~~q~~~~~~~~~~-----~v~~~~g~~~~--------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~- 177 (391)
|+.|+++.++++.. .+..++|+... ...++|+|+||+++..++......+.+++++|+||||++.+
T Consensus 94 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 173 (220)
T 1t6n_A 94 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 173 (220)
T ss_dssp HHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSS
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcc
Confidence 99999999998863 56667776542 12469999999999998888777788999999999999876
Q ss_pred cccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHhccccCCCeeE
Q psy6275 178 KERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHV 224 (391)
Q Consensus 178 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~v 224 (391)
.++...+..++..++.+.|++++|||+++. ..+.+ .+..+|..+
T Consensus 174 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~---~~~~~p~~i 218 (220)
T 1t6n_A 174 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR---KFMQDPMEI 218 (220)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH---TTCSSCEEE
T ss_pred cCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHH---HHcCCCeEE
Confidence 456666777777788889999999999876 55554 344555544
No 44
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.96 E-value=1.8e-28 Score=253.79 Aligned_cols=155 Identities=23% Similarity=0.270 Sum_probs=124.3
Q ss_pred CCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-----CeEEEEcccHHHHHHHHHHHH
Q psy6275 48 EKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-----QRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 48 ~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-----~~vlvl~P~~~L~~q~~~~~~ 121 (391)
...+..+||. |+++|.++++.+.+++++++++|||+|||++|++++++.+..+ +++||++|+++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3467788886 9999999999999999999999999999999999998877542 799999999999999999999
Q ss_pred Hhcc----cceeeeCCcccC-------CCCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCccccchhHHHHH-
Q psy6275 122 EQFK----DVGLITGDVTIN-------PSSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDKERGYVWEETL- 188 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~~~~~~~~~i~- 188 (391)
+++. .+..++|+.... ..++|+|+||+++.+.+..... .+.+++++|+||||++.+.. .+..++
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~---~~~~i~~ 159 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQH---PYNMIMF 159 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTC---HHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcc---cHHHHHH
Confidence 9974 667788876543 2579999999999999887655 67899999999999987542 222222
Q ss_pred ---HH-h----CCCCcEEEEcccCC
Q psy6275 189 ---IL-L----SDNVRFVFLSATIP 205 (391)
Q Consensus 189 ---~~-~----~~~~~~i~~SAT~~ 205 (391)
.. + +...++++||||+.
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccc
Confidence 11 1 35789999999996
No 45
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.96 E-value=1.5e-29 Score=228.43 Aligned_cols=184 Identities=21% Similarity=0.242 Sum_probs=147.2
Q ss_pred ccccccCCCCccCCCC-CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh----cCCeEEEEcccHHHHHHH
Q psy6275 42 PLAQSKEKPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK----QSQRVIYTTPIKALSNQK 116 (391)
Q Consensus 42 ~l~~~~~~~~~~~~~~-~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~----~~~~vlvl~P~~~L~~q~ 116 (391)
++++.+.+.+.+.||. |+++|.++++.+.+++++++.||||+|||++|++|++..+. .+.+++|++|+++|+.|+
T Consensus 35 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~ 114 (245)
T 3dkp_A 35 KINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQI 114 (245)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHH
Confidence 7888899999999997 99999999999999999999999999999999999998875 356899999999999999
Q ss_pred HHHHHHhcc----cceeeeCCcc--------cCCCCCEEEEcHHHHHHHHhcC--ccccCccceEEEecccccCcc---c
Q psy6275 117 YREFEEQFK----DVGLITGDVT--------INPSSSCLIMTTEILRNMLYRG--SEITREVGWVIFDEIHYMRDK---E 179 (391)
Q Consensus 117 ~~~~~~~~~----~v~~~~g~~~--------~~~~~~I~v~Tp~~l~~~l~~~--~~~l~~~~~lViDE~h~~~~~---~ 179 (391)
++.+++++. .+..++|+.. ....++|+|+||+++..++... ...+.+++++|+||||++.++ +
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~ 194 (245)
T 3dkp_A 115 HRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTG 194 (245)
T ss_dssp HHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--C
T ss_pred HHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhccccccc
Confidence 999999876 3333443322 1345789999999999988776 356789999999999999774 3
Q ss_pred cchhHHHHHHHh-CCCCcEEEEcccCCChHHHHHHhccccCCCeeEeee
Q psy6275 180 RGYVWEETLILL-SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT 227 (391)
Q Consensus 180 ~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~ 227 (391)
+...+..++..+ +.+.|+++||||+++. +.+|+..+..+|..+...
T Consensus 195 ~~~~~~~i~~~~~~~~~~~~~~SAT~~~~--v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 195 FRDQLASIFLACTSHKVRRAMFSATFAYD--VEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEEESSCCHH--HHHHHHHHSSSCEEEEEC
T ss_pred HHHHHHHHHHhcCCCCcEEEEEeccCCHH--HHHHHHHhCCCCEEEEeC
Confidence 444555555444 4578999999999765 445555556677665543
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.96 E-value=4.3e-28 Score=254.06 Aligned_cols=151 Identities=22% Similarity=0.281 Sum_probs=121.1
Q ss_pred cCCC-CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHhcc-
Q psy6275 53 EYPF-VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYTTPIKALSNQKYREFEEQFK- 125 (391)
Q Consensus 53 ~~~~-~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl~P~~~L~~q~~~~~~~~~~- 125 (391)
.+|+ +|+++|.++++.+.+++++++++|||+|||++|++|++..+.. ++++||++|+++|+.|+...+++++.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 3455 4999999999999999999999999999999999999998865 78999999999999999999999864
Q ss_pred ---cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCccccchhHHHHHH----H
Q psy6275 126 ---DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDKERGYVWEETLI----L 190 (391)
Q Consensus 126 ---~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~~~~~~~~~i~~----~ 190 (391)
.+..++|+..... .++|+|+||+++.+.+..... .+.+++++|+||||++.+.+. +..++. .
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~---~~~i~~~~~~~ 399 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP---YNVLMTRYLEQ 399 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH---HHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc---HHHHHHHHHHH
Confidence 6677888875443 579999999999998887665 688999999999999876532 332222 1
Q ss_pred -h---CCCCcEEEEcccCCC
Q psy6275 191 -L---SDNVRFVFLSATIPN 206 (391)
Q Consensus 191 -~---~~~~~~i~~SAT~~~ 206 (391)
+ ....++++||||+..
T Consensus 400 ~~~~~~~~~~~l~lSATp~~ 419 (797)
T 4a2q_A 400 KFNSASQLPQILGLTASVGV 419 (797)
T ss_dssp HHTTCCCCCEEEEEESCCCC
T ss_pred hhccCCCCCeEEEEcCCccc
Confidence 1 456899999999953
No 47
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.3e-27 Score=235.68 Aligned_cols=160 Identities=18% Similarity=0.223 Sum_probs=129.9
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+++|+++|.++++.+.++ ++++.+|||+|||++++.++...+. .+.++||++|+++|+.|+.+++.++++ .+..
T Consensus 7 ~~~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CCCccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 457999999999999888 9999999999999999999887764 678999999999999999999999975 5677
Q ss_pred eeCCcccC------CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 130 ITGDVTIN------PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 130 ~~g~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
++|+.... ...+|+|+||+.+...+......+.+++++|+||||++.+......+...+.......++++||||
T Consensus 86 ~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaT 165 (494)
T 1wp9_A 86 LTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTAS 165 (494)
T ss_dssp ECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESC
T ss_pred eeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecC
Confidence 88876532 257899999999999888776678899999999999987543333333344445667899999999
Q ss_pred CCCh-HHHHHHhc
Q psy6275 204 IPNA-SQFAQWVS 215 (391)
Q Consensus 204 ~~~~-~~~~~~l~ 215 (391)
+.+. ..+.+++.
T Consensus 166 p~~~~~~~~~l~~ 178 (494)
T 1wp9_A 166 PGSTPEKIMEVIN 178 (494)
T ss_dssp SCSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHH
Confidence 9854 45555544
No 48
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.95 E-value=9e-28 Score=248.60 Aligned_cols=152 Identities=24% Similarity=0.279 Sum_probs=118.6
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC------CeEEEEcccHHHHHHH-HHHHHHhcc--
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS------QRVIYTTPIKALSNQK-YREFEEQFK-- 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~------~~vlvl~P~~~L~~q~-~~~~~~~~~-- 125 (391)
+++|+++|.++++.+.+++++++++|||+|||++|++|++..+..+ +++||++|+++|+.|+ .+.+++++.
T Consensus 5 ~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~ 84 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW 84 (699)
T ss_dssp --CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC
Confidence 5789999999999999999999999999999999999998876442 8999999999999999 999999986
Q ss_pred -cceeeeCCcccC-------CCCCEEEEcHHHHHHHHh------cCccccCccceEEEecccccCccc-cchhHHHHHHH
Q psy6275 126 -DVGLITGDVTIN-------PSSSCLIMTTEILRNMLY------RGSEITREVGWVIFDEIHYMRDKE-RGYVWEETLIL 190 (391)
Q Consensus 126 -~v~~~~g~~~~~-------~~~~I~v~Tp~~l~~~l~------~~~~~l~~~~~lViDE~h~~~~~~-~~~~~~~i~~~ 190 (391)
.+..++|+.... ...+|+|+||+++.+.+. .....+..+++||+||||++.... +...+...+..
T Consensus 85 ~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~ 164 (699)
T 4gl2_A 85 YRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQ 164 (699)
T ss_dssp SCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHH
T ss_pred ceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHh
Confidence 677788887654 358999999999998873 334567899999999999985432 33333322222
Q ss_pred h----C---------CCCcEEEEcccCCC
Q psy6275 191 L----S---------DNVRFVFLSATIPN 206 (391)
Q Consensus 191 ~----~---------~~~~~i~~SAT~~~ 206 (391)
. . +.+++++||||+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 165 KLKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hhcccccccccccCCCCCEEEEecccccc
Confidence 1 1 56899999999986
No 49
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.95 E-value=1.5e-28 Score=262.82 Aligned_cols=258 Identities=15% Similarity=0.121 Sum_probs=178.0
Q ss_pred CccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcc----
Q psy6275 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFK---- 125 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~---- 125 (391)
.+.+||.| ++|.++++.+.+|+|++++||||||||+ |.+|++..+ ..+++++|++||++|+.|+++.++.++.
T Consensus 51 ~~~~g~~p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 51 RKCVGEPR-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp HTTTCSCC-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHhcCCCH-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 34578999 9999999999999999999999999998 777766654 5678999999999999999999998875
Q ss_pred ----cceeeeCCcccCC---------CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC
Q psy6275 126 ----DVGLITGDVTINP---------SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS 192 (391)
Q Consensus 126 ----~v~~~~g~~~~~~---------~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~ 192 (391)
.++.++|+..... +++|+|+||+++.+++.+ +++++++|+||||++++ ++..++.++..++
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~~~~~~~i~~~lg 202 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--ASKNVDKLLHLLG 202 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--STHHHHHHHHHTT
T ss_pred CccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--ccccHHHHHHHhC
Confidence 3456777654321 289999999999987765 66999999999999987 4777887777663
Q ss_pred -----------CCCcEEEEcccCCChHHHHHHh-ccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhch
Q psy6275 193 -----------DNVRFVFLSATIPNASQFAQWV-SHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNY 260 (391)
Q Consensus 193 -----------~~~~~i~~SAT~~~~~~~~~~l-~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~ 260 (391)
...|++++|||++....+...+ ..... +.+........++.++++..
T Consensus 203 f~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~--i~v~~~~~~~~~i~~~~~~~------------------- 261 (1054)
T 1gku_B 203 FHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN--FDIGSSRITVRNVEDVAVND------------------- 261 (1054)
T ss_dssp EEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC--CCCSCCEECCCCEEEEEESC-------------------
T ss_pred cchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE--EEccCcccCcCCceEEEech-------------------
Confidence 4688999999987753222221 11110 01110111122344444310
Q ss_pred HHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh---HH
Q psy6275 261 QVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET---EE 337 (391)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~---~~ 337 (391)
++...+.+.+... +.++||||+|++.|+.++..|+.. +.+. ..
T Consensus 262 --------------------------------~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~ 307 (1054)
T 1gku_B 262 --------------------------------ESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTAT 307 (1054)
T ss_dssp --------------------------------CCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTS
T ss_pred --------------------------------hHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEecc
Confidence 1111333444443 368999999999999999999876 4332 23
Q ss_pred HHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 338 VKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 338 r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+..+.+.|++ ..++|++|. .-|+++++|||++++
T Consensus 308 ~~~~l~~F~~G~~~VLVaTa-------s~Tdv~~rGIDip~V 342 (1054)
T 1gku_B 308 KKGDYEKFVEGEIDHLIGTA-------HYYGTLVRGLDLPER 342 (1054)
T ss_dssp SSHHHHHHHHTSCSEEEEEC-------C------CCSCCTTT
T ss_pred HHHHHHHHHcCCCcEEEEec-------CCCCeeEeccccCCc
Confidence 3455666666 667777710 002599999999985
No 50
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.95 E-value=4.3e-27 Score=249.38 Aligned_cols=148 Identities=22% Similarity=0.262 Sum_probs=120.4
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHhcc----c
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-----SQRVIYTTPIKALSNQKYREFEEQFK----D 126 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-----~~~vlvl~P~~~L~~q~~~~~~~~~~----~ 126 (391)
++|+++|.++++.+.+|+++++++|||+|||++|++|++..+.. ++++||++|+++|+.|++..+++++. .
T Consensus 247 ~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 326 (936)
T 4a2w_A 247 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYS 326 (936)
T ss_dssp -CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCce
Confidence 35999999999999999999999999999999999999888765 78999999999999999999999864 6
Q ss_pred ceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCcc-ccCccceEEEecccccCccccchhHHHHHHHh-------
Q psy6275 127 VGLITGDVTINP-------SSSCLIMTTEILRNMLYRGSE-ITREVGWVIFDEIHYMRDKERGYVWEETLILL------- 191 (391)
Q Consensus 127 v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~~-~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~------- 191 (391)
+..++|+..... .++|+|+||+++.+.+..... .+.+++++|+||||++...+ . +..++..+
T Consensus 327 v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~--~-~~~i~~~~~~~~~~~ 403 (936)
T 4a2w_A 327 VQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH--P-YNVLMTRYLEQKFNS 403 (936)
T ss_dssp EEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC--H-HHHHHHHHHHHHHTT
T ss_pred EEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc--c-HHHHHHHHHHHhhcc
Confidence 677888875443 478999999999998887665 67889999999999987653 2 33332211
Q ss_pred -CCCCcEEEEcccCCC
Q psy6275 192 -SDNVRFVFLSATIPN 206 (391)
Q Consensus 192 -~~~~~~i~~SAT~~~ 206 (391)
....++++||||+..
T Consensus 404 ~~~~~~~l~LSATp~~ 419 (936)
T 4a2w_A 404 ASQLPQILGLTASVGV 419 (936)
T ss_dssp CSCCCEEEEEESCCCC
T ss_pred CCCcCeEEEecCCccc
Confidence 456899999999953
No 51
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.95 E-value=1.1e-26 Score=231.92 Aligned_cols=274 Identities=15% Similarity=0.155 Sum_probs=178.2
Q ss_pred CCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-CeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 55 PFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
.++|+++|.++++.+.+++++++++|||+|||++++.++...+..+ +++||++|+++|+.|+++.+.++.. .+..
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 3479999999999998889999999999999999999988877554 4999999999999999999988743 4566
Q ss_pred eeCCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 130 ITGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 130 ~~g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
++|+.... ...+|+|+||+.+.. .....+.+++++|+||||++.. ..+..++..+....++++||||++
T Consensus 191 ~~~~~~~~~~~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSATp~ 263 (510)
T 2oca_A 191 IGGGASKDDKYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLR 263 (510)
T ss_dssp CGGGCCTTGGGCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEESCGG
T ss_pred EecCCccccccccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEeCCC
Confidence 77776654 678999999997643 3335577899999999999864 356677777777889999999997
Q ss_pred Ch-HH---HHHHhccccCCCeeEeee-----CCCCcCceEeeccCCCCCeeeeecCchh---hhhchHHHHHHhhhhhhh
Q psy6275 206 NA-SQ---FAQWVSHLHHQPCHVVYT-----DYRPTPLQHYLFPNGGDGIHLIVDDNKF---KEHNYQVAMNVLANAGDA 273 (391)
Q Consensus 206 ~~-~~---~~~~l~~~~~~~~~v~~~-----~~~~~~i~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~ 273 (391)
+. .. +..+++ ........ .+...+.....+.+ ....... ....+...+..+...
T Consensus 264 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~--- 329 (510)
T 2oca_A 264 DGKANIMQYVGMFG----EIFKPVTTSKLMEDGQVTELKINSIFL-------RYPDEFTTKLKGKTYQEEIKIITGL--- 329 (510)
T ss_dssp GCSSCHHHHHHHHC----SEECCCCCC---------CCEEEEEEE-------ECCHHHHHHHTTCCHHHHHHHHHTC---
T ss_pred CCcccHHHhHHhhC----CeEEeeCHHHHhhCCcCCCceEEEEee-------cCChHHhccccccchHHHHHHHhcc---
Confidence 55 22 222222 11111111 00111111111100 0000000 001122211111100
Q ss_pred hccCCCCCCCCCCCCCCCcccHHHHHHHHHH---cCCCcEEEEEcchhhHHHHHHHhhccCC--------CChHHHHHHH
Q psy6275 274 AKAGDHKGGRKGGPKGGVQTNCFKIVKMIME---RNLAPVIVFSFSKKDCEIYAMQMAKLNF--------NETEEVKLVD 342 (391)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~iIF~~t~~~~~~la~~L~~~g~--------~~~~~r~~~~ 342 (391)
..+...+.+.+.. .++.++||||+ .++|+.+++.|.+.+. ....+|..+.
T Consensus 330 ------------------~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~ 390 (510)
T 2oca_A 330 ------------------SKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMK 390 (510)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHH
Confidence 0111223333333 35556777777 8999999999988633 3346788888
Q ss_pred HHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 343 DVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 343 ~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+.|++ ..++|++|- +++++|+|++.+
T Consensus 391 ~~f~~g~~~vLv~T~----------~~~~~GiDip~v 417 (510)
T 2oca_A 391 TLAENGKGIIIVASY----------GVFSTGISVKNL 417 (510)
T ss_dssp HHHHHCCSCEEEEEH----------HHHHHSCCCCSE
T ss_pred HHHhCCCCCEEEEEc----------ChhhcccccccC
Confidence 88877 456677661 499999998754
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=7.6e-27 Score=251.12 Aligned_cols=256 Identities=21% Similarity=0.250 Sum_probs=180.9
Q ss_pred CCccCCCCCcHHHHHHHHHHhc----CC--cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 50 PAREYPFVLDPFQKEAILCIEN----NQ--SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 50 ~~~~~~~~~~~~Q~~~i~~i~~----~~--~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
....++|++|++|.++++.+.+ ++ +++++||||+|||.+++.+++..+..+.+++|++||++|+.|+++.+.+.
T Consensus 596 ~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 596 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp HHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHH
Confidence 3456799999999999998765 55 89999999999999999999888888999999999999999999999988
Q ss_pred cc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHH
Q psy6275 124 FK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL 188 (391)
Q Consensus 124 ~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~ 188 (391)
+. .+..+++.... ....+|+|+||+.+. ....+.+++++|+||+|++ +......+
T Consensus 676 ~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~-----g~~~~~~l 745 (1151)
T 2eyq_A 676 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRF-----GVRHKERI 745 (1151)
T ss_dssp STTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGS-----CHHHHHHH
T ss_pred hhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhc-----ChHHHHHH
Confidence 75 45556654331 236899999997653 2345789999999999985 44555666
Q ss_pred HHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhh
Q psy6275 189 ILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLA 268 (391)
Q Consensus 189 ~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 268 (391)
..++.+.++++||||+.... +...+.. ..+...+........++..++.... ..
T Consensus 746 ~~l~~~~~vl~lSATp~p~~-l~~~~~~-~~~~~~i~~~~~~r~~i~~~~~~~~--------------~~---------- 799 (1151)
T 2eyq_A 746 KAMRANVDILTLTATPIPRT-LNMAMSG-MRDLSIIATPPARRLAVKTFVREYD--------------SM---------- 799 (1151)
T ss_dssp HHHHTTSEEEEEESSCCCHH-HHHHHTT-TSEEEECCCCCCBCBCEEEEEEECC--------------HH----------
T ss_pred HHhcCCCCEEEEcCCCChhh-HHHHHhc-CCCceEEecCCCCccccEEEEecCC--------------HH----------
Confidence 66777899999999986542 2222211 1111111111111123333332111 00
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc--CC--------CChHHH
Q psy6275 269 NAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL--NF--------NETEEV 338 (391)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~--g~--------~~~~~r 338 (391)
.....+.+.+ ..+++++|||++++.++.+++.|++. +. ....+|
T Consensus 800 ------------------------~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR 853 (1151)
T 2eyq_A 800 ------------------------VVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 853 (1151)
T ss_dssp ------------------------HHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHH
T ss_pred ------------------------HHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHH
Confidence 0011233322 23569999999999999999999875 22 234778
Q ss_pred HHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 339 KLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 339 ~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
..+++.|++ ..++|++|+ ++++|||++.+
T Consensus 854 ~~il~~F~~g~~~VLVaT~-----------v~e~GiDip~v 883 (1151)
T 2eyq_A 854 ERVMNDFHHQRFNVLVCTT-----------IIETGIDIPTA 883 (1151)
T ss_dssp HHHHHHHHTTSCCEEEESS-----------TTGGGSCCTTE
T ss_pred HHHHHHHHcCCCcEEEECC-----------cceeeecccCC
Confidence 888888877 668888885 89999999854
No 53
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.94 E-value=7.2e-27 Score=230.92 Aligned_cols=293 Identities=15% Similarity=0.087 Sum_probs=181.6
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccc-ceeeeC
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD-VGLITG 132 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~-v~~~~g 132 (391)
.+++|+++|.++++.+.+++++++++|||+|||++++.++... +.++||++|+++|+.|+.+++.++... ++.++|
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g 166 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG 166 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSS
T ss_pred CCCCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECC
Confidence 4568999999999999998999999999999999999888765 789999999999999999999995446 888888
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCChH----
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNAS---- 208 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~---- 208 (391)
+.. ...+|+|+||+.+...+.. ...+++++|+||||++.+..+. .++..++ ..+++++|||+.+..
T Consensus 167 ~~~--~~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~----~~~~~~~-~~~~l~lSATp~~~~~~~~ 236 (472)
T 2fwr_A 167 RIK--ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLTATFEREDGRHE 236 (472)
T ss_dssp SCB--CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTH----HHHHTCC-CSEEEEEESCCCCTTSGGG
T ss_pred CcC--CcCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHH----HHHHhcC-CCeEEEEecCccCCCCHHH
Confidence 764 3578999999998765532 1246999999999998765443 3444443 578999999997542
Q ss_pred HHHHHhccccCCCeeEeee----CCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhh--ccCCCCCC
Q psy6275 209 QFAQWVSHLHHQPCHVVYT----DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAA--KAGDHKGG 282 (391)
Q Consensus 209 ~~~~~l~~~~~~~~~v~~~----~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 282 (391)
.+..+++.. .+.... ..-..+.....+.++..... ...|.. -.......+...+... ........
T Consensus 237 ~l~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~ 307 (472)
T 2fwr_A 237 ILKEVVGGK----VFELFPDSLAGKHLAKYTIKRIFVPLAEDE----RVEYEK-REKVYKQFLRARGITLRRAEDFNKIV 307 (472)
T ss_dssp SHHHHTCCE----EEECCHHHHTSCCCCSEEECCEEECCCHHH----HHHTTT-TTHHHHSCSSSCCCTTTCCSSSTTTT
T ss_pred HHHHHhCCe----EeecCHHHHhcCcCCCeEEEEEEcCCCHHH----HHHHHH-HHHHHHHHHHhcCccccchhhHHHHH
Confidence 233333211 110000 00000111000000000000 000000 0000000000000000 00000000
Q ss_pred CCCCCC-----------------CCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhcc---CCCChHHHHHHH
Q psy6275 283 RKGGPK-----------------GGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL---NFNETEEVKLVD 342 (391)
Q Consensus 283 ~~~~~~-----------------~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~---g~~~~~~r~~~~ 342 (391)
...... .....++..+.+.+....+.++||||++++.++.+++.|.-. |-....+|+.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~~~R~~~~ 387 (472)
T 2fwr_A 308 MASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEIL 387 (472)
T ss_dssp TTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHH
T ss_pred HHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhCcceeeCCCCHHHHHHHH
Confidence 000000 001234566777777777789999999999999999999643 223447788888
Q ss_pred HHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 343 DVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 343 ~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+.|++ ..++|++|+ ++++|+|++.++
T Consensus 388 ~~F~~g~~~vLv~T~-----------~~~~Gldlp~~~ 414 (472)
T 2fwr_A 388 EGFRTGRFRAIVSSQ-----------VLDEGIDVPDAN 414 (472)
T ss_dssp HHHHHSSCSBCBCSS-----------CCCSSSCSCCBS
T ss_pred HHHhCCCCCEEEEcC-----------chhcCcccccCc
Confidence 88887 667888775 899999998654
No 54
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.94 E-value=6.3e-28 Score=244.20 Aligned_cols=253 Identities=12% Similarity=0.050 Sum_probs=172.3
Q ss_pred cccccCCCCccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 43 LAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 43 l~~~~~~~~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
+++.+.+.+....-.++|+|+.+++.+.++++++++||||||||++|++|+++.+ ..+.++||++||++|+.|+++.++
T Consensus 157 ~~~~~~~~l~~~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 157 KSGDYVSAITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp -----CEECBCCCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT
T ss_pred chHHHHHHHhhccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc
Confidence 3444444444432238888888899999999999999999999999999988765 456799999999999999998876
Q ss_pred HhcccceeeeCC--cccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC-CCCcEE
Q psy6275 122 EQFKDVGLITGD--VTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS-DNVRFV 198 (391)
Q Consensus 122 ~~~~~v~~~~g~--~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i 198 (391)
.. .++...+. ........+.++|.+.+...+... ..+.+++++|+||||++ +.++...+..+...++ .+.|++
T Consensus 237 ~~--~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~i 312 (618)
T 2whx_A 237 GL--PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAI 312 (618)
T ss_dssp TS--CEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEE
T ss_pred CC--ceeEecccceeccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEE
Confidence 32 33321111 112334567889999888766554 34789999999999998 5556666777776664 679999
Q ss_pred EEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCC
Q psy6275 199 FLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGD 278 (391)
Q Consensus 199 ~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (391)
+||||++... ..+.. .++..+..... .+...
T Consensus 313 l~SAT~~~~~--~~~~~---~~~~~~~v~~~-----------~~~~~--------------------------------- 343 (618)
T 2whx_A 313 FMTATPPGST--DPFPQ---SNSPIEDIERE-----------IPERS--------------------------------- 343 (618)
T ss_dssp EECSSCTTCC--CSSCC---CSSCEEEEECC-----------CCSSC---------------------------------
T ss_pred EEECCCchhh--hhhhc---cCCceeeeccc-----------CCHHH---------------------------------
Confidence 9999997651 11111 01111110000 00000
Q ss_pred CCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-Hhhhcc
Q psy6275 279 HKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLS 353 (391)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~ 353 (391)
...+++.+.+. .+++||||+|+++|+.+++.|++.|+.+. ++|..+.+.|++ ..++|+
T Consensus 344 ----------------~~~ll~~l~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~~R~~~l~~F~~g~~~VLV 406 (618)
T 2whx_A 344 ----------------WNTGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVV 406 (618)
T ss_dssp ----------------CSSSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEE
T ss_pred ----------------HHHHHHHHHhC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChHHHHHHHHhhcCCCcEEEE
Confidence 00122223333 45999999999999999999998877653 567777777776 668888
Q ss_pred hhhccCcchHhHHHHHHhhhhhc
Q psy6275 354 EEDRKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 354 ~~d~~~~~~~~~~~~l~~GI~~~ 376 (391)
+|| ++++|||+.
T Consensus 407 aTd-----------v~~rGiDi~ 418 (618)
T 2whx_A 407 TTD-----------ISEMGANFR 418 (618)
T ss_dssp ECG-----------GGGTTCCCC
T ss_pred ECc-----------HHHcCcccC
Confidence 885 999999995
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=3.3e-27 Score=243.49 Aligned_cols=256 Identities=25% Similarity=0.289 Sum_probs=175.6
Q ss_pred CCCCccCCCCCcHHHHHHHHHHhcC------CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 48 EKPAREYPFVLDPFQKEAILCIENN------QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 48 ~~~~~~~~~~~~~~Q~~~i~~i~~~------~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
...+..++|+||++|.++++.+.++ ++++++||||||||++|+++++..+..+.+++|++||++|+.|+++.+.
T Consensus 359 ~~~~~~lpf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~ 438 (780)
T 1gm5_A 359 EEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTV 438 (780)
T ss_dssp HHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHH
Confidence 3455678999999999999988654 5899999999999999999999999889999999999999999999999
Q ss_pred Hhcc----cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 122 EQFK----DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 122 ~~~~----~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
+++. ++..++|+... ....+|+|+||+.+.+ ...+.+++++|+||+|++....+ .
T Consensus 439 ~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~qr-----~ 508 (780)
T 1gm5_A 439 ESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQR-----E 508 (780)
T ss_dssp HHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----------C
T ss_pred HHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHHH-----H
Confidence 9875 66778887653 2358999999987743 34578999999999998743221 1
Q ss_pred HHHHhCCCCcEEEEcccCCChHHHHH-HhccccCCCeeEeee-CCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHH
Q psy6275 187 TLILLSDNVRFVFLSATIPNASQFAQ-WVSHLHHQPCHVVYT-DYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAM 264 (391)
Q Consensus 187 i~~~~~~~~~~i~~SAT~~~~~~~~~-~l~~~~~~~~~v~~~-~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 264 (391)
.+.......++++||||+.... +.. +++. -...++.. .....++..++...
T Consensus 509 ~l~~~~~~~~vL~mSATp~p~t-l~~~~~g~---~~~s~i~~~p~~r~~i~~~~~~~----------------------- 561 (780)
T 1gm5_A 509 ALMNKGKMVDTLVMSATPIPRS-MALAFYGD---LDVTVIDEMPPGRKEVQTMLVPM----------------------- 561 (780)
T ss_dssp CCCSSSSCCCEEEEESSCCCHH-HHHHHTCC---SSCEEECCCCSSCCCCEECCCCS-----------------------
T ss_pred HHHHhCCCCCEEEEeCCCCHHH-HHHHHhCC---cceeeeeccCCCCcceEEEEecc-----------------------
Confidence 1222235689999999985542 222 2221 11122111 00111333322210
Q ss_pred HHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHH--cCCCcEEEEEcch--------hhHHHHHHHhhc---cC
Q psy6275 265 NVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIME--RNLAPVIVFSFSK--------KDCEIYAMQMAK---LN 331 (391)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~iIF~~t~--------~~~~~la~~L~~---~g 331 (391)
+....+.+.+.. ..+.+++|||++. ..++.+++.|.+ .+
T Consensus 562 ----------------------------~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~ 613 (780)
T 1gm5_A 562 ----------------------------DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPE 613 (780)
T ss_dssp ----------------------------STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC--
T ss_pred ----------------------------chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCC
Confidence 011122233222 2356899999965 457888888877 22
Q ss_pred CCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccCC
Q psy6275 332 FNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 332 ~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+.+ .++|..+++.|++ ..++|++|+ ++++|||+++++
T Consensus 614 ~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~-----------vie~GIDiP~v~ 659 (780)
T 1gm5_A 614 FKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT-----------VIEVGIDVPRAN 659 (780)
T ss_dssp -CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS-----------CCCSCSCCTTCC
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC-----------CCCccccCCCCC
Confidence 222 3677888888887 668888885 899999998654
No 56
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.94 E-value=1.2e-27 Score=234.83 Aligned_cols=241 Identities=14% Similarity=0.076 Sum_probs=160.4
Q ss_pred CCC-CcHHHHHHHHHHhcCCcE-EEEecCCcchHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHHHHHHHhcccceeee
Q psy6275 55 PFV-LDPFQKEAILCIENNQSV-LVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT 131 (391)
Q Consensus 55 ~~~-~~~~Q~~~i~~i~~~~~~-li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~ 131 (391)
|+. ++|+|+ +|+.+.+++++ +++||||||||++|++|++.. +..+.+++|++||++|+.|+++.+... .++...
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeee
Confidence 454 889985 78988887766 999999999999999988764 456789999999999999999887532 222222
Q ss_pred CCc--ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH-hCCCCcEEEEcccCCChH
Q psy6275 132 GDV--TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-LSDNVRFVFLSATIPNAS 208 (391)
Q Consensus 132 g~~--~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~ 208 (391)
+.. .......|.++|++.+...+.+. ..+.+++++|+||||++ +..+......+... ...+.|+++||||++..
T Consensus 78 ~~~~~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~- 154 (451)
T 2jlq_A 78 PAVKSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS- 154 (451)
T ss_dssp TTCSCCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC-
T ss_pred ccccccCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCcc-
Confidence 211 22335679999999988777654 45789999999999987 33333333333322 34579999999999753
Q ss_pred HHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCC
Q psy6275 209 QFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPK 288 (391)
Q Consensus 209 ~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (391)
...+ ....+..+... +..+...+.
T Consensus 155 -~~~~---~~~~~~~~~~~--~~~p~~~~~-------------------------------------------------- 178 (451)
T 2jlq_A 155 -TDPF---PQSNSPIEDIE--REIPERSWN-------------------------------------------------- 178 (451)
T ss_dssp -CCSS---CCCSSCEEEEE--CCCCSSCCS--------------------------------------------------
T ss_pred -chhh---hcCCCceEecC--ccCCchhhH--------------------------------------------------
Confidence 1111 11111111111 111100000
Q ss_pred CCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 289 GGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 289 ~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
.+.+.+.+. .+++||||+|+++|+.+++.|...|+.+. +.++.+.+.|++ ...+|++|
T Consensus 179 --------~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT-------- 241 (451)
T 2jlq_A 179 --------TGFDWITDY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-------- 241 (451)
T ss_dssp --------SSCHHHHHC-CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTHHHHGGGGGSSCCSEEEEC--------
T ss_pred --------HHHHHHHhC-CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHHHHHHHhhccCCceEEEEC--------
Confidence 011222333 45999999999999999999998877653 445555555555 55667777
Q ss_pred hHHHHHHhhhhhcc
Q psy6275 364 NILPLLRRGIGIHH 377 (391)
Q Consensus 364 ~~~~~l~~GI~~~h 377 (391)
+++++|||++.
T Consensus 242 ---~v~~~GiDip~ 252 (451)
T 2jlq_A 242 ---DISEMGANFRA 252 (451)
T ss_dssp ---GGGGSSCCCCC
T ss_pred ---CHHHhCcCCCC
Confidence 49999999974
No 57
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=1.6e-26 Score=234.75 Aligned_cols=151 Identities=14% Similarity=0.147 Sum_probs=121.1
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
.+||.|+++|..+++.++.|+ +..++||+|||++|.+|++.....+..++|++||++||.|.++.+..++. .++
T Consensus 79 ~lG~~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~ 156 (844)
T 1tf5_A 79 VTGMFPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVG 156 (844)
T ss_dssp HHSCCCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcCCCCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 468899999999999999998 99999999999999999885444577899999999999999999888766 667
Q ss_pred eeeCCcccC-----CCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEecccccC-ccccc--------------
Q psy6275 129 LITGDVTIN-----PSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYMR-DKERG-------------- 181 (391)
Q Consensus 129 ~~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~~-~~~~~-------------- 181 (391)
.+.|+.... ..++|+|+||+++ ++++... ...++.+.++|+||||.|+ |.++.
T Consensus 157 ~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 157 LNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp ECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 777775532 2479999999999 5555432 2456889999999999986 65432
Q ss_pred -hhHHHHHHHhC---------CCCcEE-----------------EEcccCC
Q psy6275 182 -YVWEETLILLS---------DNVRFV-----------------FLSATIP 205 (391)
Q Consensus 182 -~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~ 205 (391)
..+..++..++ ...|+. ++|||.+
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~ 287 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHV 287 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGH
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccc
Confidence 44566777775 357777 8899975
No 58
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.94 E-value=2.5e-26 Score=232.82 Aligned_cols=124 Identities=15% Similarity=0.142 Sum_probs=104.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|..+++.++.|+ +..++||+|||++|.+|++.....+.+++|++||++||.|.+..+..++. .++.
T Consensus 71 lg~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~ 148 (853)
T 2fsf_A 71 FGMRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGI 148 (853)
T ss_dssp HSCCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 57789999999999999998 99999999999999999986555678999999999999999999888876 6677
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcCc------cccCccceEEEecccccC-ccc
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRGS------EITREVGWVIFDEIHYMR-DKE 179 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~~------~~l~~~~~lViDE~h~~~-~~~ 179 (391)
+.|+.... ..++|+|+||+++ ++++.... ..++.+.++|+||||.|+ +.+
T Consensus 149 i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a 211 (853)
T 2fsf_A 149 NLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEA 211 (853)
T ss_dssp CCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTT
T ss_pred EeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcC
Confidence 78876532 2479999999998 67776442 456899999999999987 543
No 59
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.93 E-value=9.5e-26 Score=233.77 Aligned_cols=279 Identities=13% Similarity=0.154 Sum_probs=190.6
Q ss_pred CCCcccccccccCCCCccCCCCCcHHHHHHHHHHh-cCCcEEEEecCCcchHHHHHHHHHHH-Hhc--CCeEEEEcccHH
Q psy6275 36 PDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIE-NNQSVLVSAHTSAGKTVVAEYAIASS-LKQ--SQRVIYTTPIKA 111 (391)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~~~~~Q~~~i~~i~-~~~~~li~apTGsGKT~~~~~~~~~~-l~~--~~~vlvl~P~~~ 111 (391)
.+|..+++++.+.+.+...+..|++.|+++|+.+. .+++++++||||||||+.....++.. ... +.+++|++|+++
T Consensus 72 ~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 72 NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRV 151 (773)
T ss_dssp CTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHH
T ss_pred CCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHH
Confidence 46888888888888777777559999999998654 56789999999999999432222222 222 668999999999
Q ss_pred HHHHHHHHHHHhcc-cceeeeC-----CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccc-cCcccc-chh
Q psy6275 112 LSNQKYREFEEQFK-DVGLITG-----DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHY-MRDKER-GYV 183 (391)
Q Consensus 112 L~~q~~~~~~~~~~-~v~~~~g-----~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~-~~~~~~-~~~ 183 (391)
|+.|++..+....+ .++...| +.......+|+++||+++.+.+... ..+.++++||+||+|. .++... ...
T Consensus 152 La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~ 230 (773)
T 2xau_A 152 AAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGL 230 (773)
T ss_dssp HHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHH
Confidence 99999988877664 3333333 1223457889999999999877654 3588999999999996 433211 112
Q ss_pred HHHHHHHhCCCCcEEEEcccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHH
Q psy6275 184 WEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVA 263 (391)
Q Consensus 184 ~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 263 (391)
+..+.. ..++.++++||||+ +.+.+++|++. ..++...++..++++++...+..+ +..
T Consensus 231 l~~l~~-~~~~~~iIl~SAT~-~~~~l~~~~~~-----~~vi~v~gr~~pv~~~~~~~~~~~---------~~~------ 288 (773)
T 2xau_A 231 LKQVVK-RRPDLKIIIMSATL-DAEKFQRYFND-----APLLAVPGRTYPVELYYTPEFQRD---------YLD------ 288 (773)
T ss_dssp HHHHHH-HCTTCEEEEEESCS-CCHHHHHHTTS-----CCEEECCCCCCCEEEECCSSCCSC---------HHH------
T ss_pred HHHHHH-hCCCceEEEEeccc-cHHHHHHHhcC-----CCcccccCcccceEEEEecCCchh---------HHH------
Confidence 333333 33578999999999 45668887652 233445666777877766443211 000
Q ss_pred HHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhc-----------cC-
Q psy6275 264 MNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK-----------LN- 331 (391)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~-----------~g- 331 (391)
..+..+.+.+.....+++||||+++++++.+++.|.+ .+
T Consensus 289 -----------------------------~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~ 339 (773)
T 2xau_A 289 -----------------------------SAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPL 339 (773)
T ss_dssp -----------------------------HHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred -----------------------------HHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCe
Confidence 1122444444454567999999999999999999974 12
Q ss_pred -------CCChHHHHHHHHHHH-----H-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 332 -------FNETEEVKLVDDVFS-----N-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 332 -------~~~~~~r~~~~~~~~-----~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
-...++|..+.+.|. + ..+++++| +++++|||++.
T Consensus 340 ~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT-----------~iae~GidIp~ 387 (773)
T 2xau_A 340 SVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST-----------NIAETSLTIDG 387 (773)
T ss_dssp EEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC-----------THHHHTCCCTT
T ss_pred EEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC-----------cHHHhCcCcCC
Confidence 223366666666664 2 55666666 59999999973
No 60
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.93 E-value=7.8e-26 Score=229.57 Aligned_cols=152 Identities=14% Similarity=0.073 Sum_probs=123.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----cce
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVG 128 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~ 128 (391)
.+|+.|+++|..+++.++.|+ +..++||+|||++|.+|++.....+..++|++||++|+.|.++.+..++. .++
T Consensus 107 ~lG~rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~ 184 (922)
T 1nkt_A 107 VLDQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVG 184 (922)
T ss_dssp HHSCCCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HcCCCCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 368899999999999999988 99999999999999999965444577899999999999999998888766 667
Q ss_pred eeeCCcccC-----CCCCEEEEcHHHH-HHHHhcC------ccccCccceEEEecccccC-ccc---------------c
Q psy6275 129 LITGDVTIN-----PSSSCLIMTTEIL-RNMLYRG------SEITREVGWVIFDEIHYMR-DKE---------------R 180 (391)
Q Consensus 129 ~~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~------~~~l~~~~~lViDE~h~~~-~~~---------------~ 180 (391)
++.|+.+.. ..++|+|+||+++ ++++... ...++.+.++|+||||.|+ |.+ +
T Consensus 185 ~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~ 264 (922)
T 1nkt_A 185 VILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASNW 264 (922)
T ss_dssp ECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchhH
Confidence 777776532 1479999999998 6766543 3456789999999999987 432 3
Q ss_pred chhHHHHHHHhC---------CCCcEE-----------------EEcccCCC
Q psy6275 181 GYVWEETLILLS---------DNVRFV-----------------FLSATIPN 206 (391)
Q Consensus 181 ~~~~~~i~~~~~---------~~~~~i-----------------~~SAT~~~ 206 (391)
...+..++..++ +..|+. ++|||.+.
T Consensus 265 y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 265 YTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp HHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred HHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 345677888887 678888 88999865
No 61
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.92 E-value=3.3e-26 Score=230.28 Aligned_cols=142 Identities=20% Similarity=0.098 Sum_probs=116.2
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc-cceeeeCCccc
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK-DVGLITGDVTI 136 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~~~g~~~~ 136 (391)
+.++|.++++.+.++++++++||||||||.++.+++++ .+.+++|++|||+|+.|+++.+.+.++ .++...|+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~~ 294 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRTI 294 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCEE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEec
Confidence 44556555666678899999999999999999988776 467999999999999999999887766 77888888888
Q ss_pred CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCc--EEEEcccCCC
Q psy6275 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR--FVFLSATIPN 206 (391)
Q Consensus 137 ~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~--~i~~SAT~~~ 206 (391)
....+|+|+||+++ +......+.+++++|+||||++ +.++...+..++..++...+ +++||||+++
T Consensus 295 ~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 295 TTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp CCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred cCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 88899999999997 3455556778999999999765 44566667778888876656 7888999976
No 62
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.92 E-value=1.2e-24 Score=220.75 Aligned_cols=159 Identities=17% Similarity=0.144 Sum_probs=98.0
Q ss_pred CCCCCcHHHHHHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHh---------cCCeEEEEcccHHHHHHHH-H
Q psy6275 54 YPFVLDPFQKEAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLK---------QSQRVIYTTPIKALSNQKY-R 118 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~---------~~~~vlvl~P~~~L~~q~~-~ 118 (391)
.++.|+++|.++++.+.+ ++++++++|||+|||++++..+...+. .+.++||++|+++|+.|+. +
T Consensus 175 ~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~ 254 (590)
T 3h1t_A 175 SGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDK 254 (590)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHH
Confidence 345799999999998754 467999999999999997766665554 4589999999999999999 7
Q ss_pred HHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHhc----CccccCccceEEEecccccCccccchhHHHHHHHhCCC
Q psy6275 119 EFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYR----GSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDN 194 (391)
Q Consensus 119 ~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~~----~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~ 194 (391)
.++.+...+..+.++ ......+|+|+||+++...... .......+++||+||||++.... ...+..++..++ .
T Consensus 255 ~~~~~~~~~~~~~~~-~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~-~ 331 (590)
T 3h1t_A 255 TFTPFGDARHKIEGG-KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFE-P 331 (590)
T ss_dssp CCTTTCSSEEECCC---CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHST-T
T ss_pred HHHhcchhhhhhhcc-CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCC-c
Confidence 777665555544433 3455789999999998876532 12234578999999999986532 245566777776 4
Q ss_pred CcEEEEcccCCCh--HHHHHHhc
Q psy6275 195 VRFVFLSATIPNA--SQFAQWVS 215 (391)
Q Consensus 195 ~~~i~~SAT~~~~--~~~~~~l~ 215 (391)
.++++||||+... .....+++
T Consensus 332 ~~~l~lTATP~~~~~~~~~~~f~ 354 (590)
T 3h1t_A 332 AFQIGMTATPLREDNRDTYRYFG 354 (590)
T ss_dssp SEEEEEESSCSCTTTHHHHHHSC
T ss_pred ceEEEeccccccccchhHHHHcC
Confidence 7899999998765 34445443
No 63
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.92 E-value=3.2e-26 Score=233.30 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=157.7
Q ss_pred CCcHHHH-----HHHHHHh------cCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 57 VLDPFQK-----EAILCIE------NNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 57 ~~~~~Q~-----~~i~~i~------~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.|+++|+ ++|+.++ ++++++++||||||||++|++|+++.+ ..+.+++|++||++|+.|+++.+..+.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 4899999 9998877 899999999999999999999988764 567899999999999999998887542
Q ss_pred ccceeeeCCcc--cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEc
Q psy6275 125 KDVGLITGDVT--INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLS 201 (391)
Q Consensus 125 ~~v~~~~g~~~--~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~S 201 (391)
+....+... ..+..-+-+.+.+.+...+... ..+.+++++|+||||++ +......+..+...+ +.+.|+++||
T Consensus 295 --i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~~~~~vl~~S 370 (673)
T 2wv9_A 295 --VRYLTPAVQREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEAGEAAAIFMT 370 (673)
T ss_dssp --CEECCC---CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred --eeeecccccccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-CccHHHHHHHHHHhccccCCcEEEEc
Confidence 222222211 1223345567777766555543 45789999999999998 222222333333333 3679999999
Q ss_pred ccCCChHHHHHHhccccCCCeeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCC
Q psy6275 202 ATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKG 281 (391)
Q Consensus 202 AT~~~~~~~~~~l~~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (391)
||++... .. +... ..++.......+...
T Consensus 371 AT~~~~i--~~----~~~~----------~~~i~~v~~~~~~~~------------------------------------ 398 (673)
T 2wv9_A 371 ATPPGTS--DP----FPDT----------NSPVHDVSSEIPDRA------------------------------------ 398 (673)
T ss_dssp SSCTTCC--CS----SCCC----------SSCEEEEECCCCSSC------------------------------------
T ss_pred CCCChhh--hh----hccc----------CCceEEEeeecCHHH------------------------------------
Confidence 9997541 01 1100 111111111001000
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-Hhhhcchhh
Q psy6275 282 GRKGGPKGGVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEED 356 (391)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d 356 (391)
...++..+.+ ..+++||||+++++|+.+++.|++.++.+. ++|..+++.|++ ..++|++|+
T Consensus 399 -------------~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTd 464 (673)
T 2wv9_A 399 -------------WSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTD 464 (673)
T ss_dssp -------------CSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEECG
T ss_pred -------------HHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHHCCCceEEEECc
Confidence 0011122223 356999999999999999999998776543 567777777776 667788775
Q ss_pred ccCcchHhHHHHHHhhhhhc
Q psy6275 357 RKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 357 ~~~~~~~~~~~~l~~GI~~~ 376 (391)
++++|||++
T Consensus 465 -----------v~e~GIDip 473 (673)
T 2wv9_A 465 -----------ISEMGANFG 473 (673)
T ss_dssp -----------GGGTTCCCC
T ss_pred -----------hhhcceeeC
Confidence 999999997
No 64
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.92 E-value=9.3e-25 Score=212.91 Aligned_cols=225 Identities=14% Similarity=0.138 Sum_probs=149.7
Q ss_pred cCCcEEEEecCCcchHHHHHHHHH-HHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc--CCCCCEEEEcH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIA-SSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI--NPSSSCLIMTT 147 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~-~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~--~~~~~I~v~Tp 147 (391)
++++++++||||||||++|+.|++ ..+..+.+++|++||++|+.|+++.+.. -.+++.+|.... .+...+.+.|.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG--EPIRYMTPAVQSERTGNEIVDFMCH 78 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEEC---------CCCSEEEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC--CeEEEEecCccccCCCCceEEEEch
Confidence 378999999999999999988888 4556788999999999999999987762 255555554222 23456778899
Q ss_pred HHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH-hCCCCcEEEEcccCCChHHHHHHhccccCCCeeEee
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-LSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVY 226 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~~v~~ 226 (391)
+.+...+.. ...+.+++++|+||+|++ +..+......+... .+.+.++++||||+++.. .. +...
T Consensus 79 ~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~--~~----~~~~------ 144 (431)
T 2v6i_A 79 STFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTT--EA----FPPS------ 144 (431)
T ss_dssp HHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCC--CS----SCCC------
T ss_pred HHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcch--hh----hcCC------
Confidence 988766665 445789999999999997 32222233333333 256799999999997531 01 1000
Q ss_pred eCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHHHcC
Q psy6275 227 TDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIMERN 306 (391)
Q Consensus 227 ~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 306 (391)
+ .++.......+.. ....+++.+.+.
T Consensus 145 ---~-~~i~~~~~~~~~~-------------------------------------------------~~~~~~~~l~~~- 170 (431)
T 2v6i_A 145 ---N-SPIIDEETRIPDK-------------------------------------------------AWNSGYEWITEF- 170 (431)
T ss_dssp ---S-SCCEEEECCCCSS-------------------------------------------------CCSSCCHHHHSC-
T ss_pred ---C-CceeeccccCCHH-------------------------------------------------HHHHHHHHHHcC-
Confidence 0 1111110000000 000122233333
Q ss_pred CCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhc
Q psy6275 307 LAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIH 376 (391)
Q Consensus 307 ~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~ 376 (391)
.+++||||+++++|+.+++.|++.++... .+|+.+++.|++ ..++|++|+ ++++|||++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~-----------v~e~GiDip 234 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITTD-----------ISEMGANFK 234 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEECG-----------GGGTSCCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEECc-----------hHHcCcccC
Confidence 45899999999999999999998766542 467777777777 668888885 999999997
No 65
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.91 E-value=7.3e-25 Score=214.15 Aligned_cols=229 Identities=14% Similarity=0.127 Sum_probs=142.3
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc-c-CCCCCEEEE
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT-I-NPSSSCLIM 145 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~-~-~~~~~I~v~ 145 (391)
+.++++++++||||||||++|++|+++.+ ..+.+++|++||++|+.|+++.++.+. +....+... . .+..-+-..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~--v~~~~~~~~~v~Tp~~l~~~l 82 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLD--VKFHTQAFSAHGSGREVIDAM 82 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC--EEEESSCCCCCCCSSCCEEEE
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCC--eEEecccceeccCCccceeee
Confidence 56799999999999999999999988855 456799999999999999998887542 332222211 1 112223344
Q ss_pred cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh-CCCCcEEEEcccCCCh-HHHHHHhccccCCCee
Q psy6275 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL-SDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCH 223 (391)
Q Consensus 146 Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~-~~~~~~l~~~~~~~~~ 223 (391)
+.+.+...+.. ...+.+++++|+||+|++ +..+...+..+.... +.+.|+++||||++.. ..+.. .
T Consensus 83 ~~~~l~~~~~~-~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~-------~--- 150 (440)
T 1yks_A 83 CHATLTYRMLE-PTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPGTSDEFPH-------S--- 150 (440)
T ss_dssp EHHHHHHHHTS-SSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC-------C---
T ss_pred cccchhHhhhC-cccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh-------c---
Confidence 55554443332 234789999999999998 333333333333333 3679999999999654 21111 0
Q ss_pred EeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHHH
Q psy6275 224 VVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMIM 303 (391)
Q Consensus 224 v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 303 (391)
..++......++... ...++..+.
T Consensus 151 -------~~~~~~~~~~~~~~~-------------------------------------------------~~~~~~~l~ 174 (440)
T 1yks_A 151 -------NGEIEDVQTDIPSEP-------------------------------------------------WNTGHDWIL 174 (440)
T ss_dssp -------SSCEEEEECCCCSSC-------------------------------------------------CSSSCHHHH
T ss_pred -------CCCeeEeeeccChHH-------------------------------------------------HHHHHHHHH
Confidence 011111111111000 001122223
Q ss_pred HcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhccC
Q psy6275 304 ERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378 (391)
Q Consensus 304 ~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h~ 378 (391)
+. ++++||||++++.|+.+++.|+..|+.+. ++|..+++.|++ ..++|++|+ ++++|||++ +
T Consensus 175 ~~-~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----------v~e~GiDip-v 241 (440)
T 1yks_A 175 AD-KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATD-----------IAEMGANLC-V 241 (440)
T ss_dssp HC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESS-----------STTCCTTCC-C
T ss_pred hc-CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECC-----------hhheeeccC-c
Confidence 33 46999999999999999999998766542 567777777776 678888885 899999998 5
Q ss_pred CC
Q psy6275 379 VK 380 (391)
Q Consensus 379 ~~ 380 (391)
..
T Consensus 242 ~~ 243 (440)
T 1yks_A 242 ER 243 (440)
T ss_dssp SE
T ss_pred eE
Confidence 43
No 66
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=183.35 Aligned_cols=150 Identities=24% Similarity=0.276 Sum_probs=109.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc------CCeEEEEcccHHHHHH-HHHHHHHhcc-
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVIYTTPIKALSNQ-KYREFEEQFK- 125 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~------~~~vlvl~P~~~L~~q-~~~~~~~~~~- 125 (391)
.+++|+++|.++++.+.+++++++.+|||+|||++++.++...+.. +.+++|++|+++|+.| +.+.+..+..
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 3567999999999999999999999999999999999998876643 6799999999999999 7677777764
Q ss_pred --cceeeeCCcccCC-------CCCEEEEcHHHHHHHHhcCc------cccCccceEEEecccccCccc-cchhHHHHHH
Q psy6275 126 --DVGLITGDVTINP-------SSSCLIMTTEILRNMLYRGS------EITREVGWVIFDEIHYMRDKE-RGYVWEETLI 189 (391)
Q Consensus 126 --~v~~~~g~~~~~~-------~~~I~v~Tp~~l~~~l~~~~------~~l~~~~~lViDE~h~~~~~~-~~~~~~~i~~ 189 (391)
.+..++|+..... .++|+|+||+.+...+.... ..+.+++++|+||||++.+.+ +...+..++.
T Consensus 110 ~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 189 (216)
T 3b6e_A 110 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 189 (216)
T ss_dssp TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHHHH
T ss_pred CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHHHH
Confidence 5666777655433 37899999999998887643 456789999999999987543 2222222222
Q ss_pred Hh-------------CCCCcEEEEccc
Q psy6275 190 LL-------------SDNVRFVFLSAT 203 (391)
Q Consensus 190 ~~-------------~~~~~~i~~SAT 203 (391)
.. ....++++||||
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 190 QKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HhcccccccccccCCCCcceEEEeecC
Confidence 11 156899999998
No 67
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.90 E-value=5.2e-25 Score=216.43 Aligned_cols=230 Identities=15% Similarity=0.101 Sum_probs=142.9
Q ss_pred HHHhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc--cCCCCCEE
Q psy6275 67 LCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT--INPSSSCL 143 (391)
Q Consensus 67 ~~i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~--~~~~~~I~ 143 (391)
..+.++++++++||||||||++|++|++..+ ..+.++||++|+++|+.|+++.+... .+....+... ..+...+.
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~~~~~~~~t~~~~i~ 93 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL--PVRYQTSAVQREHQGNEIVD 93 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS--CEEECC--------CCCSEE
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc--eEeEEecccccCCCCCcEEE
Confidence 3467789999999999999999999988765 46789999999999999999888732 2222222111 12345678
Q ss_pred EEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH-hCCCCcEEEEcccCCChHHHHHHhccccCCCe
Q psy6275 144 IMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-LSDNVRFVFLSATIPNASQFAQWVSHLHHQPC 222 (391)
Q Consensus 144 v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT~~~~~~~~~~l~~~~~~~~ 222 (391)
++|.+.+...+... ..+++++++|+||||++.. .....+..+... ...+.|+++||||++... ..+.. ...|+
T Consensus 94 ~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~-~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~--~~~~~--~~~pi 167 (459)
T 2z83_A 94 VMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDP-ASIAARGYIATKVELGEAAAIFMTATPPGTT--DPFPD--SNAPI 167 (459)
T ss_dssp EEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSH-HHHHHHHHHHHHHHTTSCEEEEECSSCTTCC--CSSCC--CSSCE
T ss_pred EEchHHHHHHhhcc-ccccCCcEEEEECCccCCc-hhhHHHHHHHHHhccCCccEEEEEcCCCcch--hhhcc--CCCCe
Confidence 89999887766554 3478999999999998521 111111112221 235799999999997541 11100 01121
Q ss_pred eEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHHH
Q psy6275 223 HVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKMI 302 (391)
Q Consensus 223 ~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 302 (391)
.... ...+... ...++..+
T Consensus 168 ~~~~------------~~~~~~~-------------------------------------------------~~~~~~~l 186 (459)
T 2z83_A 168 HDLQ------------DEIPDRA-------------------------------------------------WSSGYEWI 186 (459)
T ss_dssp EEEE------------CCCCSSC-------------------------------------------------CSSCCHHH
T ss_pred EEec------------ccCCcch-------------------------------------------------hHHHHHHH
Confidence 1110 0000000 00111222
Q ss_pred HHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh----HHHHHHHHHHHH-HhhhcchhhccCcchHhHHHHHHhhhhhcc
Q psy6275 303 MERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET----EEVKLVDDVFSN-AMDVLSEEDRKLPQIENILPLLRRGIGIHH 377 (391)
Q Consensus 303 ~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~----~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~l~~GI~~~h 377 (391)
.+. .+++||||+|++.|+.+++.|+..|+.+. ++|..+.+.|++ ..++|++| +++++|||++.
T Consensus 187 ~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~~iLVaT-----------~v~~~GiDip~ 254 (459)
T 2z83_A 187 TEY-AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDWDFVITT-----------DISEMGANFGA 254 (459)
T ss_dssp HHC-CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCCSEEEES-----------SCC---CCCSC
T ss_pred Hhc-CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCceEEEEC-----------ChHHhCeecCC
Confidence 333 46999999999999999999998876653 344444555544 45666666 59999999985
No 68
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.89 E-value=1.5e-22 Score=186.50 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=118.5
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC-CeEEEEcccHHHHHHHHHHHHHhcc----cceee
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFK----DVGLI 130 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~-~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~~ 130 (391)
++|+++|.++++.+.++++.++++|||+|||.+++.++...+..+ +++||++|+++|+.|+.+++.++.. .+..+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~ 191 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKI 191 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEEC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEE
Confidence 479999999999888888889999999999999988887766554 4999999999999999999999865 34445
Q ss_pred eCCcccC----CCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 131 TGDVTIN----PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 131 ~g~~~~~----~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
.++.... ...+|+|+||+.+... ....+.+++++|+||||++.+ ..+..++..+....++++||||+++
T Consensus 192 ~~~~~~~~~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSATp~~ 264 (282)
T 1rif_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSGSLRD 264 (282)
T ss_dssp STTCSSTTCCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECSSCCT
T ss_pred eCCCcchhhhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeCCCCC
Confidence 5554443 5689999999977432 334567899999999999863 3666777777678999999999987
Q ss_pred h
Q psy6275 207 A 207 (391)
Q Consensus 207 ~ 207 (391)
.
T Consensus 265 ~ 265 (282)
T 1rif_A 265 G 265 (282)
T ss_dssp T
T ss_pred c
Confidence 6
No 69
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=3.9e-22 Score=178.65 Aligned_cols=155 Identities=23% Similarity=0.288 Sum_probs=118.7
Q ss_pred CCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-c----CCeEEEEcccHHHHHHHHHHHHHhcc-ccee
Q psy6275 56 FVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-Q----SQRVIYTTPIKALSNQKYREFEEQFK-DVGL 129 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~----~~~vlvl~P~~~L~~q~~~~~~~~~~-~v~~ 129 (391)
+.++++|.++++.+.+|+++++.||||||||+++..+++.... . +.++++++|+++++.|+.+.+....+ .++.
T Consensus 60 ~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 60 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred CChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 4588999999999999999999999999999988888777543 2 34899999999999999999887765 3322
Q ss_pred eeC----Cccc--CCCCCEEEEcHHHHHHHHhcCccccCccceEEEeccccc-Cccccc-hhHHHHHHHhCCCCcEEEEc
Q psy6275 130 ITG----DVTI--NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM-RDKERG-YVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 130 ~~g----~~~~--~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~i~~S 201 (391)
..| .... ...++|+|+||+++.+++.. .+++++++|+||||.+ .+.++. ..+..++... ++.|+++||
T Consensus 140 ~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~S 215 (235)
T 3llm_A 140 SCGYSVRFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMS 215 (235)
T ss_dssp SEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEE
T ss_pred eEEEeechhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEe
Confidence 222 1111 24578999999999998866 3789999999999985 443333 2334444443 478999999
Q ss_pred ccCCChHHHHHHhc
Q psy6275 202 ATIPNASQFAQWVS 215 (391)
Q Consensus 202 AT~~~~~~~~~~l~ 215 (391)
||++... +++|++
T Consensus 216 AT~~~~~-~~~~~~ 228 (235)
T 3llm_A 216 ATIDTSM-FCEYFF 228 (235)
T ss_dssp CSSCCHH-HHHHTT
T ss_pred cCCCHHH-HHHHcC
Confidence 9997665 888775
No 70
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.88 E-value=2.1e-22 Score=204.76 Aligned_cols=221 Identities=19% Similarity=0.252 Sum_probs=158.9
Q ss_pred HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCC-----CCCE
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP-----SSSC 142 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~-----~~~I 142 (391)
..+++++++++||||||||+.++ ..+....+.+|++|+++|+.|+++++++....+++++|+..... ..++
T Consensus 151 r~l~rk~vlv~apTGSGKT~~al----~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~iv~TpGr~~~i 226 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYHAI----QKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQPNGKQASH 226 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHHHH----HHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEECCSTTCCCCSE
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH----HHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeEEecCCCcccce
Confidence 44678999999999999998333 33333456799999999999999999998778899999876522 3678
Q ss_pred EEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC-CCCcEEEEcccCCChHHHHHHhccccCCC
Q psy6275 143 LIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS-DNVRFVFLSATIPNASQFAQWVSHLHHQP 221 (391)
Q Consensus 143 ~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~-~~~~~i~~SAT~~~~~~~~~~l~~~~~~~ 221 (391)
+++|++.+. ....++++|+||||++.+.+++..+..++..++ ...+++++|||.+....+..+. ...
T Consensus 227 l~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~----~~~ 294 (677)
T 3rc3_A 227 VSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTT----GEE 294 (677)
T ss_dssp EEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHH----TCC
T ss_pred eEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhc----CCc
Confidence 899886432 346789999999999999889999998888877 6789999999964334344432 223
Q ss_pred eeEeeeCCCCcCceEeeccCCCCCeeeeecCchhhhhchHHHHHHhhhhhhhhccCCCCCCCCCCCCCCCcccHHHHHHH
Q psy6275 222 CHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVKM 301 (391)
Q Consensus 222 ~~v~~~~~~~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 301 (391)
+.+ ....+..++....... ..
T Consensus 295 ~~v-~~~~r~~~l~~~~~~l----------------------------------------------------------~~ 315 (677)
T 3rc3_A 295 VEV-RDYKRLTPISVLDHAL----------------------------------------------------------ES 315 (677)
T ss_dssp EEE-EECCCSSCEEECSSCC----------------------------------------------------------CS
T ss_pred eEE-EEeeecchHHHHHHHH----------------------------------------------------------HH
Confidence 332 2223333222110000 00
Q ss_pred HHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH---HhhhcchhhccCcchHhHHHHHH
Q psy6275 302 IMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN---AMDVLSEEDRKLPQIENILPLLR 370 (391)
Q Consensus 302 l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~---~~~~l~~~d~~~~~~~~~~~~l~ 370 (391)
+... ....||||+|+++++.+++.|.+.++.+ .++|..+.+.|++ ..++|++|+ +++
T Consensus 316 l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----------i~e 383 (677)
T 3rc3_A 316 LDNL-RPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----------AIG 383 (677)
T ss_dssp GGGC-CTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----------GGG
T ss_pred HHhc-CCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----------HHH
Confidence 0111 2356999999999999999999876554 3678888888884 467888885 899
Q ss_pred hhhhh
Q psy6275 371 RGIGI 375 (391)
Q Consensus 371 ~GI~~ 375 (391)
+|||+
T Consensus 384 ~GlDi 388 (677)
T 3rc3_A 384 MGLNL 388 (677)
T ss_dssp SSCCC
T ss_pred CCcCc
Confidence 99998
No 71
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.86 E-value=1.5e-21 Score=207.27 Aligned_cols=153 Identities=20% Similarity=0.190 Sum_probs=111.1
Q ss_pred cCCCCCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHHHHHHHHHhcCC--eEEEEcccHHHHHHHHHHHHHhcc-cc
Q psy6275 53 EYPFVLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEEQFK-DV 127 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~~~--~vlvl~P~~~L~~q~~~~~~~~~~-~v 127 (391)
...++|+|+|.+++..+.. +.+++++++||+|||.+++..+...+..+. ++||++|+ +|+.|+...+.+.++ .+
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v 227 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRF 227 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCC
T ss_pred CCCCCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCE
Confidence 3456799999999987765 458999999999999999888877765554 99999999 999999999977776 55
Q ss_pred eeeeCCc---------ccCCCCCEEEEcHHHHHHHHhc-CccccCccceEEEecccccCccccc--hhHHHHHHHhCCCC
Q psy6275 128 GLITGDV---------TINPSSSCLIMTTEILRNMLYR-GSEITREVGWVIFDEIHYMRDKERG--YVWEETLILLSDNV 195 (391)
Q Consensus 128 ~~~~g~~---------~~~~~~~I~v~Tp~~l~~~l~~-~~~~l~~~~~lViDE~h~~~~~~~~--~~~~~i~~~~~~~~ 195 (391)
.+++|+. ......+|+|+|++.+...... .......+++||+||||++...... ..+..+........
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~ 307 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVP 307 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCS
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCC
Confidence 5555443 1223578999999988532111 1122447999999999999654322 12333333334556
Q ss_pred cEEEEcccCCC
Q psy6275 196 RFVFLSATIPN 206 (391)
Q Consensus 196 ~~i~~SAT~~~ 206 (391)
++++||||+..
T Consensus 308 ~~L~LTATPi~ 318 (968)
T 3dmq_A 308 GVLLLTATPEQ 318 (968)
T ss_dssp SEEESCSSCSS
T ss_pred cEEEEEcCCcc
Confidence 79999999853
No 72
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.84 E-value=1.1e-19 Score=180.62 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=106.8
Q ss_pred CCCcHHHHHHHHHH----hcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcc--cc
Q psy6275 56 FVLDPFQKEAILCI----ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFK--DV 127 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i----~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~--~v 127 (391)
..|+|+|.++++.+ ..+++++++.+||+|||.+++..+...... ..++||++| .+|+.|+.+++.++.. .+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 46999999999866 457899999999999999976666555433 468999999 5689999999999876 55
Q ss_pred eeeeCCccc--CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 128 GLITGDVTI--NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 128 ~~~~g~~~~--~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
.+++|+... ....+|+|+||+.+..... .....++++|+||||++.+. .......+..++ ..+.+++|||+.
T Consensus 115 ~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~--~~~~~~~l~~l~-~~~~l~LTaTP~ 188 (500)
T 1z63_A 115 AVFHEDRSKIKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNP--QTKIFKAVKELK-SKYRIALTGTPI 188 (500)
T ss_dssp EECSSSTTSCCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCT--TSHHHHHHHTSC-EEEEEEECSSCS
T ss_pred EEEecCchhccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCH--hHHHHHHHHhhc-cCcEEEEecCCC
Confidence 556665432 1357899999998864332 22347899999999998654 223334444453 467899999985
Q ss_pred C
Q psy6275 206 N 206 (391)
Q Consensus 206 ~ 206 (391)
.
T Consensus 189 ~ 189 (500)
T 1z63_A 189 E 189 (500)
T ss_dssp T
T ss_pred C
Confidence 4
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.84 E-value=4.9e-20 Score=194.89 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=108.8
Q ss_pred CCcHHHHHHHHHHhc--------------CCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHH
Q psy6275 57 VLDPFQKEAILCIEN--------------NQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~--------------~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L~~q~~~~ 119 (391)
.|+++|.+|++.+.. +++.+++++||||||+++ +++...+.. ..++||++|+++|+.|+...
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998754 368999999999999997 445555542 36999999999999999999
Q ss_pred HHHhcccceeeeCCcc-------c-CCCCCEEEEcHHHHHHHHhcCc--cccCccceEEEecccccCccccchhHHHHHH
Q psy6275 120 FEEQFKDVGLITGDVT-------I-NPSSSCLIMTTEILRNMLYRGS--EITREVGWVIFDEIHYMRDKERGYVWEETLI 189 (391)
Q Consensus 120 ~~~~~~~v~~~~g~~~-------~-~~~~~I~v~Tp~~l~~~l~~~~--~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~ 189 (391)
+..+.... +.+... . ....+|+|+||+++...+.... ..+....+||+||||++.. +..+..+..
T Consensus 350 f~~f~~~~--v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~ 424 (1038)
T 2w00_A 350 YQRFSPDS--VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLKK 424 (1038)
T ss_dssp HHTTSTTC--SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHHH
T ss_pred HHHhcccc--cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHHH
Confidence 98876521 112111 1 2467999999999998775432 2355789999999999742 344566666
Q ss_pred HhCCCCcEEEEcccCCCh
Q psy6275 190 LLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 190 ~~~~~~~~i~~SAT~~~~ 207 (391)
.++ +.++++|||||...
T Consensus 425 ~~p-~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 425 KFK-RYYQFGFTGTPIFP 441 (1038)
T ss_dssp HCS-SEEEEEEESSCCCS
T ss_pred hCC-cccEEEEeCCcccc
Confidence 676 48999999999754
No 74
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.84 E-value=3.8e-20 Score=165.80 Aligned_cols=142 Identities=20% Similarity=0.161 Sum_probs=113.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccc-ceeeeC
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD-VGLITG 132 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~-v~~~~g 132 (391)
.+++|+++|.+++..+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++... ++.++|
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g 166 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSG 166 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESS
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 4567999999999999988899999999999999988777653 789999999999999999999984335 777877
Q ss_pred CcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCChH
Q psy6275 133 DVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNAS 208 (391)
Q Consensus 133 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~ 208 (391)
+.. ...+|+|+|++.+...... ....++++|+||+|.+.+. .+..++..++ ..++++||||+.+.+
T Consensus 167 ~~~--~~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~----~~~~i~~~~~-~~~~l~LSATp~r~D 232 (237)
T 2fz4_A 167 RIK--ELKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE----SYVQIAQMSI-APFRLGLTATFERED 232 (237)
T ss_dssp SCB--CCCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTT----THHHHHHTCC-CSEEEEEEESCC---
T ss_pred CCC--CcCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCCh----HHHHHHHhcc-CCEEEEEecCCCCCC
Confidence 654 4578999999988765432 2246899999999998754 3445555554 578999999997653
No 75
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.81 E-value=6.6e-19 Score=178.59 Aligned_cols=121 Identities=19% Similarity=0.168 Sum_probs=102.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|+.|+++|..+++.++.|+ +..+.||+|||++|.+|++.....+.+++|++||++||.|.+..+..++. .+++
T Consensus 76 lG~~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~ 153 (997)
T 2ipc_A 76 LGMRHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGV 153 (997)
T ss_dssp TCCCCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEE
T ss_pred hCCCCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 68899999999999999998 99999999999999999965444678999999999999999999988876 6677
Q ss_pred eeCCcccC-----CCCCEEEEcHHHH-HHHHhcCc------cccC---ccceEEEecccccC
Q psy6275 130 ITGDVTIN-----PSSSCLIMTTEIL-RNMLYRGS------EITR---EVGWVIFDEIHYMR 176 (391)
Q Consensus 130 ~~g~~~~~-----~~~~I~v~Tp~~l-~~~l~~~~------~~l~---~~~~lViDE~h~~~ 176 (391)
++|+.... ..++|+|+||+++ ++++..+. ..++ .+.++|+||+|.|+
T Consensus 154 i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 154 IQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 77776532 2589999999999 77776552 3466 89999999999976
No 76
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.3e-16 Score=166.81 Aligned_cols=154 Identities=17% Similarity=0.114 Sum_probs=109.9
Q ss_pred CCCCcHHHHHHHHHHh----cCCcEEEEecCCcchHHHHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHhcc--
Q psy6275 55 PFVLDPFQKEAILCIE----NNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQKYREFEEQFK-- 125 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~----~~~~~li~apTGsGKT~~~~~~~~~~l---~~~~~vlvl~P~~~L~~q~~~~~~~~~~-- 125 (391)
+.+++|+|.+++..+. .+++.+++.+||.|||++++..+...+ ...+.+||++| .+|+.|+..++.+++.
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~ 312 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDL 312 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTC
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCc
Confidence 4579999999998654 788999999999999998766665443 34678999999 7889999999999986
Q ss_pred cceeeeCCcc-------------------cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHH
Q psy6275 126 DVGLITGDVT-------------------INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEE 186 (391)
Q Consensus 126 ~v~~~~g~~~-------------------~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~ 186 (391)
.+.+.+|+.. .....+|+|+|++.+......- ....+++||+||||++... ......
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l--~~~~w~~vIvDEaH~lkn~--~s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL--GSIKWQFMAVDEAHRLKNA--ESSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH--HTSEEEEEEETTGGGGCCS--SSHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH--hcCCcceeehhhhhhhcCc--hhHHHH
Confidence 4555666543 1235689999999987543211 1226889999999998543 333444
Q ss_pred HHHHhCCCCcEEEEcccCCCh--HHHHHHh
Q psy6275 187 TLILLSDNVRFVFLSATIPNA--SQFAQWV 214 (391)
Q Consensus 187 i~~~~~~~~~~i~~SAT~~~~--~~~~~~l 214 (391)
.+..+. ....+++|||+-.. .++...+
T Consensus 389 ~l~~l~-~~~rl~LTgTPiqN~l~el~~ll 417 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTPLQNNIKELAALV 417 (800)
T ss_dssp HHTTSE-EEEEEEECSCCCSSCSHHHHHHH
T ss_pred HHHHhh-hccEEEeeCCcCCCCHHHHHHHH
Confidence 444443 35678999998432 4444433
No 77
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.72 E-value=3.5e-17 Score=163.72 Aligned_cols=120 Identities=20% Similarity=0.222 Sum_probs=86.6
Q ss_pred CCCCCcHHHHHHHHH----HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhccccee
Q psy6275 54 YPFVLDPFQKEAILC----IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~----i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~ 129 (391)
.||+|+++|.+++.. +.+++++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+.-++..
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~ 80 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---KKKVLIFTRTHSQLDSIYKNAKLLGLKTGF 80 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---TCEEEEEESCHHHHHHHHHHHGGGTCCEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---CCcEEEEcCCHHHHHHHHHHHHhcCCcEEE
Confidence 477899999998754 4678999999999999999999998764 789999999999999999988775333333
Q ss_pred eeCCcc------------------------------------------------------cCCCCCEEEEcHHHHHHHHh
Q psy6275 130 ITGDVT------------------------------------------------------INPSSSCLIMTTEILRNMLY 155 (391)
Q Consensus 130 ~~g~~~------------------------------------------------------~~~~~~I~v~Tp~~l~~~l~ 155 (391)
+.|... ....++|+|+|+..+++...
T Consensus 81 l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~ 160 (540)
T 2vl7_A 81 LIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPI 160 (540)
T ss_dssp C---------------------------------------------------------CTTGGGCSEEEEETHHHHSHHH
T ss_pred ecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHH
Confidence 332110 01246899999999886433
Q ss_pred cCc-------cccCccceEEEecccccC
Q psy6275 156 RGS-------EITREVGWVIFDEIHYMR 176 (391)
Q Consensus 156 ~~~-------~~l~~~~~lViDE~h~~~ 176 (391)
... ..+...+++|+||||.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 161 RNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhhCcccccccCcCCCEEEEEccccHH
Confidence 221 124578899999999984
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.72 E-value=2.5e-16 Score=160.76 Aligned_cols=145 Identities=26% Similarity=0.257 Sum_probs=103.8
Q ss_pred CCCcHHHHHHHHHHh---------cCCcEEEEecCCcchHHHHHHHHHHHHhcC-------CeEEEEcccHHHHHHHHHH
Q psy6275 56 FVLDPFQKEAILCIE---------NNQSVLVSAHTSAGKTVVAEYAIASSLKQS-------QRVIYTTPIKALSNQKYRE 119 (391)
Q Consensus 56 ~~~~~~Q~~~i~~i~---------~~~~~li~apTGsGKT~~~~~~~~~~l~~~-------~~vlvl~P~~~L~~q~~~~ 119 (391)
..++|+|.+++..+. .+...++..+||.|||+.++..+...+..+ .++||++|+ +|+.|+.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 359999999998763 456789999999999999877776665432 469999996 899999999
Q ss_pred HHHhccc---ceeeeCCccc---------------CCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccc
Q psy6275 120 FEEQFKD---VGLITGDVTI---------------NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181 (391)
Q Consensus 120 ~~~~~~~---v~~~~g~~~~---------------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~ 181 (391)
+.++.+. +..++++... ....+|+|+|++.+...... .....++++|+||||++... .
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~--l~~~~~~~vI~DEaH~ikn~--~ 208 (644)
T 1z3i_X 133 VGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV--LHKGKVGLVICDEGHRLKNS--D 208 (644)
T ss_dssp HHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT--TTTSCCCEEEETTGGGCCTT--C
T ss_pred HHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH--hhcCCccEEEEECceecCCh--h
Confidence 9998752 2334443221 12468999999998754322 12247899999999998653 2
Q ss_pred hhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 182 YVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 182 ~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
......+..+. ....+++|||+-.
T Consensus 209 ~~~~~al~~l~-~~~rl~LTgTPiq 232 (644)
T 1z3i_X 209 NQTYLALNSMN-AQRRVLISGTPIQ 232 (644)
T ss_dssp HHHHHHHHHHC-CSEEEEECSSCSG
T ss_pred hHHHHHHHhcc-cCcEEEEecCccc
Confidence 23333444454 3678999999854
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.69 E-value=1.4e-15 Score=151.85 Aligned_cols=120 Identities=16% Similarity=0.097 Sum_probs=90.7
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----ccee
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----DVGL 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~v~~ 129 (391)
+|..|+++|.-..-.+..|+ +..+.||.|||+++.+|+.-..-.+..|.|++|++.||.|-++.+..++. .+++
T Consensus 72 lg~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~~Lglsvg~ 149 (822)
T 3jux_A 72 LGMRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYLFLGLRVGV 149 (822)
T ss_dssp TSCCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred hCCCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHHHhCCEEEE
Confidence 47789999999988888887 89999999999999999864444678899999999999998888877766 5666
Q ss_pred eeCC--------------------------------------------------cccCC-----CCCEEEEcHHHH-HHH
Q psy6275 130 ITGD--------------------------------------------------VTINP-----SSSCLIMTTEIL-RNM 153 (391)
Q Consensus 130 ~~g~--------------------------------------------------~~~~~-----~~~I~v~Tp~~l-~~~ 153 (391)
+... ..... .++|+++|..-+ .++
T Consensus 150 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~EfgFDY 229 (822)
T 3jux_A 150 INSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEFGFDY 229 (822)
T ss_dssp EETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHHHHHH
T ss_pred EcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcchhhHh
Confidence 6551 11111 368999998543 344
Q ss_pred HhcC------ccccCccceEEEeccccc
Q psy6275 154 LYRG------SEITREVGWVIFDEIHYM 175 (391)
Q Consensus 154 l~~~------~~~l~~~~~lViDE~h~~ 175 (391)
+..+ ....+.+.+.|+||+|.+
T Consensus 230 LRDnm~~~~~~~vqR~~~~aIVDEvDSi 257 (822)
T 3jux_A 230 LRDNLVLDYNDKVQRGHFYAIVDEADSV 257 (822)
T ss_dssp HHHTSCSSTTSCCCCCCCEEEEETHHHH
T ss_pred HHhhccCCHHHhccCCCCeEEEecccce
Confidence 4422 223467899999999975
No 80
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.57 E-value=5.2e-15 Score=148.46 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=94.0
Q ss_pred CCCCcHHHHHHHHH----HhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc----c
Q psy6275 55 PFVLDPFQKEAILC----IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK----D 126 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~----i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~----~ 126 (391)
||+++|.|.+.+.. +..++++++.||||+|||++|++|++. .+.+++|++||++|+.|+.+.+..+.. +
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 57899999998764 467899999999999999999999988 478999999999999999998887743 3
Q ss_pred ceeeeCCccc----------------------------------------------------------CCCCCEEEEcHH
Q psy6275 127 VGLITGDVTI----------------------------------------------------------NPSSSCLIMTTE 148 (391)
Q Consensus 127 v~~~~g~~~~----------------------------------------------------------~~~~~I~v~Tp~ 148 (391)
+..+.|.... ...++|+|+|+.
T Consensus 78 ~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~ 157 (551)
T 3crv_A 78 FSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYP 157 (551)
T ss_dssp EEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETH
T ss_pred EEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCch
Confidence 3344442110 125699999999
Q ss_pred HHHHHHhcCcc-ccCccceEEEecccccCc
Q psy6275 149 ILRNMLYRGSE-ITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 149 ~l~~~l~~~~~-~l~~~~~lViDE~h~~~~ 177 (391)
.+++...+... ......++|+||||.+.+
T Consensus 158 ~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 158 YFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred HhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99876433322 224678999999999987
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.41 E-value=4.8e-13 Score=136.61 Aligned_cols=69 Identities=26% Similarity=0.220 Sum_probs=55.2
Q ss_pred CCCCCcHHHHHHHHHHh----cCC-cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 54 YPFVLDPFQKEAILCIE----NNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~----~~~-~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+|+|++.|.+++..+. .+. ..++.|.||||||+++...+.+. +..+||++|+..++.|++..++.+++
T Consensus 5 ~~~~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~---~~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 5 RGPSPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL---GRPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecCHHHHHHHHHHHHHHCC
Confidence 36789999999998653 343 46789999999999865444332 45699999999999999999999975
No 82
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.26 E-value=8.5e-11 Score=119.97 Aligned_cols=69 Identities=23% Similarity=0.244 Sum_probs=54.4
Q ss_pred CCCCCcHHHHHHHHHHh----cCC-cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 54 YPFVLDPFQKEAILCIE----NNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~----~~~-~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
-.|+|+..|.+++..+. .+. ...+.|-||||||++....+.+. +..+||++|+..++.|++..++.+++
T Consensus 9 ~~~~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~---~~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 9 SKYQPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV---NKPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH---CCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHHcC
Confidence 35689999999988553 343 47789999999999865443322 45699999999999999999999975
No 83
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.98 E-value=2.2e-09 Score=108.57 Aligned_cols=139 Identities=15% Similarity=0.157 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCcchHHH--HHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcccceeee---
Q psy6275 59 DPFQKEAILCIENNQSVLVSAHTSAGKTVV--AEYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT--- 131 (391)
Q Consensus 59 ~~~Q~~~i~~i~~~~~~li~apTGsGKT~~--~~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~--- 131 (391)
++.|+++++.+..++.+++.|++|+|||++ ++++.+..+ ..+.++++++||..++.++.+.+.......++..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~ 230 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK 230 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 689999999999999999999999999954 455555544 3456999999999999999887765543221100
Q ss_pred CCcc--cCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEccc
Q psy6275 132 GDVT--INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203 (391)
Q Consensus 132 g~~~--~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 203 (391)
.... ...-..++-.+|+.. . +.......-.++++|+|||+.+ + ...+..++..++.+.|++++.=.
T Consensus 231 ~~~~~~~~Tih~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 231 KRIPEDASTLHRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp CSCSCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHHHHTCCTTCEEEEEECT
T ss_pred hccchhhhhhHhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHHHHhCCCCCEEEEEcch
Confidence 0000 000012222233321 1 1111112237899999999954 3 34567788888888898887543
No 84
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.79 E-value=1e-08 Score=103.83 Aligned_cols=69 Identities=20% Similarity=0.263 Sum_probs=58.9
Q ss_pred CCCcHHHHHHHHH----HhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 56 FVLDPFQKEAILC----IENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 56 ~~~~~~Q~~~i~~----i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
|+|++.|.+.+.. +.+++++++.||||+|||++|++|++..+. .+.+++|++||++|+.|+.+.+..+.
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 5799999999864 467999999999999999999999988764 47899999999999999999988764
No 85
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.69 E-value=1.2e-07 Score=95.10 Aligned_cols=127 Identities=12% Similarity=0.078 Sum_probs=86.5
Q ss_pred CccCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceee
Q psy6275 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLI 130 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~ 130 (391)
+...++.+++.|.+++..+..++.+++.||+|+|||++....+......+.++++++||...+..+.+.....
T Consensus 183 l~~~~~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~------- 255 (574)
T 3e1s_A 183 PKKARKGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRT------- 255 (574)
T ss_dssp CTTTTTTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSC-------
T ss_pred HHhhcCCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhccc-------
Confidence 3344778999999999999989999999999999998765444444456889999999999988776543211
Q ss_pred eCCcccCCCCCEEEEcHHHHHHH----HhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 131 TGDVTINPSSSCLIMTTEILRNM----LYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 131 ~g~~~~~~~~~I~v~Tp~~l~~~----l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
..|-.+++.. +..........+++|+||++.+. ...+..++..++...+++++.
T Consensus 256 -------------a~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 256 -------------ASTVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp -------------EEEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEE
T ss_pred -------------HHHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEe
Confidence 1111111110 11111223368999999999764 335666777777667777653
No 86
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.57 E-value=1.5e-07 Score=96.02 Aligned_cols=69 Identities=22% Similarity=0.258 Sum_probs=60.5
Q ss_pred CCcHHHHHHHHHHhcCC-cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 57 VLDPFQKEAILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~-~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+++-|.+|+..++..+ -.+|.||+|+|||.+....+.+.+.++.++|+++||..-++++.+++.....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~ 258 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQ 258 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCC
Confidence 48999999999876544 6799999999999998888888888999999999999999999998876543
No 87
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.52 E-value=6.4e-07 Score=87.54 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=80.0
Q ss_pred CCCC-CcHHHHHHHHHHhc-----CCcEEEEecCCcchHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHhccc
Q psy6275 54 YPFV-LDPFQKEAILCIEN-----NQSVLVSAHTSAGKTVVAEYAIASSLKQSQ-RVIYTTPIKALSNQKYREFEEQFKD 126 (391)
Q Consensus 54 ~~~~-~~~~Q~~~i~~i~~-----~~~~li~apTGsGKT~~~~~~~~~~l~~~~-~vlvl~P~~~L~~q~~~~~~~~~~~ 126 (391)
..|. +++-|.+++..+.. ...+++.|+.|+|||.+....+......+. ++++++||...+..+...+......
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T 100 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEAST 100 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEE
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhh
Confidence 4565 99999999986632 248999999999999876544444444554 7999999999888776554211111
Q ss_pred ceeeeCCc-ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 127 VGLITGDV-TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 127 v~~~~g~~-~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
+.-+.+-. ........+.. .....+..++++|+||++.+. ...+..++..++...+++++.
T Consensus 101 ~h~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 101 IHSILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHHHHHHHHhccCCCEEEEEC
Confidence 10000000 00000001100 112345578999999999763 335566666666556665553
No 88
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.46 E-value=4.1e-06 Score=84.92 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.+++.|.+|+..+..+...++.||+|+|||.+....+...+. .+.++++++||...++++...+.+.
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 489999999998888888999999999999987665555554 5789999999999999999888764
No 89
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=98.44 E-value=2.1e-07 Score=77.59 Aligned_cols=75 Identities=20% Similarity=0.267 Sum_probs=59.6
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
++...|.+.+.....+++||||+++..++.++..|...|+.+ ..+|..+.+.|++ ...+|++|+
T Consensus 21 ~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------- 93 (163)
T 2hjv_A 21 NKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------- 93 (163)
T ss_dssp GHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-------
T ss_pred HHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-------
Confidence 345567777777677799999999999999999999876554 3678888888877 557777774
Q ss_pred hHHHHHHhhhhhccC
Q psy6275 364 NILPLLRRGIGIHHG 378 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~ 378 (391)
++++|+|++.+
T Consensus 94 ----~~~~Gld~~~~ 104 (163)
T 2hjv_A 94 ----VAARGIDIENI 104 (163)
T ss_dssp ----GGTTTCCCSCC
T ss_pred ----hhhcCCchhcC
Confidence 89999999753
No 90
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=98.40 E-value=2.3e-07 Score=78.11 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=60.2
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
++...+.+++...+.+++||||+++..|+.++..|...|+.+ ..+|..+.+.|++ ...+|++|+
T Consensus 17 ~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~------- 89 (172)
T 1t5i_A 17 EKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------- 89 (172)
T ss_dssp GHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-------
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-------
Confidence 345567777777777899999999999999999998876554 4678888888887 567788775
Q ss_pred hHHHHHHhhhhhccC
Q psy6275 364 NILPLLRRGIGIHHG 378 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~ 378 (391)
++++|+|++.+
T Consensus 90 ----~~~~Gldi~~~ 100 (172)
T 1t5i_A 90 ----LFGRGMDIERV 100 (172)
T ss_dssp ----CCSTTCCGGGC
T ss_pred ----chhcCcchhhC
Confidence 89999999753
No 91
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=7.2e-06 Score=85.22 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=57.8
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.+++.|.+|+..+..+...+|.||+|+|||.+....+...+. .+.++++++||...++++.+++.+..
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhC
Confidence 389999999999888778999999999999987655554444 57899999999999999999988753
No 92
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.35 E-value=7.3e-06 Score=85.05 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=57.4
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.+++.|.+|+..+..+...++.||+|+|||.+....+...+. .+.++++++||...++++.+.+....
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g 424 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG 424 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhC
Confidence 489999999998888888999999999999986655555544 57899999999999999998887643
No 93
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=98.30 E-value=6e-07 Score=74.91 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=59.0
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 294 NCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 294 ~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
+...+.+.+...+.+++||||++++.|+.++..|...|+.+ ..+|..+.+.|++ ...+|++|+
T Consensus 17 K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-------- 88 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-------- 88 (165)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG--------
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC--------
Confidence 44566677777677899999999999999999999876543 3678888888887 567777775
Q ss_pred HHHHHHhhhhhccC
Q psy6275 365 ILPLLRRGIGIHHG 378 (391)
Q Consensus 365 ~~~~l~~GI~~~h~ 378 (391)
++++|+|++++
T Consensus 89 ---~~~~G~d~~~~ 99 (165)
T 1fuk_A 89 ---LLARGIDVQQV 99 (165)
T ss_dssp ---GGTTTCCCCSC
T ss_pred ---hhhcCCCcccC
Confidence 89999999743
No 94
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.29 E-value=7.9e-07 Score=76.16 Aligned_cols=74 Identities=16% Similarity=0.242 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 294 NCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 294 ~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
+...|.+.+...+ .++||||+++..++.++..|...|+.+ ..+|..+.+.|++ ...+|++|
T Consensus 42 K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT--------- 111 (191)
T 2p6n_A 42 KMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT--------- 111 (191)
T ss_dssp HHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC---------
T ss_pred HHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc---------
Confidence 4556666666554 589999999999999999998776553 4678888888887 56777777
Q ss_pred HHHHHHhhhhhccCC
Q psy6275 365 ILPLLRRGIGIHHGV 379 (391)
Q Consensus 365 ~~~~l~~GI~~~h~~ 379 (391)
+++++|+|++.++
T Consensus 112 --~~~~~Gldi~~v~ 124 (191)
T 2p6n_A 112 --DVASKGLDFPAIQ 124 (191)
T ss_dssp --HHHHTTCCCCCCS
T ss_pred --CchhcCCCcccCC
Confidence 5999999997543
No 95
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=98.26 E-value=3.9e-07 Score=76.88 Aligned_cols=73 Identities=14% Similarity=0.271 Sum_probs=58.4
Q ss_pred cHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchHh
Q psy6275 294 NCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIEN 364 (391)
Q Consensus 294 ~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~ 364 (391)
+...+.+.+...+.+++||||+++..|+.++..|...|+.+ ..+|..+.+.|++ ...+|++|+
T Consensus 21 K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-------- 92 (175)
T 2rb4_A 21 KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-------- 92 (175)
T ss_dssp HHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC--------
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec--------
Confidence 34566666666667799999999999999999999876543 4778888888887 567788775
Q ss_pred HHHHHHhhhhhcc
Q psy6275 365 ILPLLRRGIGIHH 377 (391)
Q Consensus 365 ~~~~l~~GI~~~h 377 (391)
++++|+|++.
T Consensus 93 ---~~~~Gid~~~ 102 (175)
T 2rb4_A 93 ---VCARGIDVKQ 102 (175)
T ss_dssp ---SCCTTTCCTT
T ss_pred ---chhcCCCccc
Confidence 8999999974
No 96
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.24 E-value=1.1e-06 Score=74.75 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=50.0
Q ss_pred cHHHHHHHHHHc-CCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 294 NCFKIVKMIMER-NLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 294 ~~~~l~~~l~~~-~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
+...|.+.+... +..++||||++++.|+.++..|...|+.+ ..+|..+.+.|++ ...+|++|+
T Consensus 32 K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~------- 104 (185)
T 2jgn_A 32 KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA------- 104 (185)
T ss_dssp HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC-------
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-------
Confidence 345666666665 46799999999999999999999877654 3567777788877 667788775
Q ss_pred hHHHHHHhhhhhccC
Q psy6275 364 NILPLLRRGIGIHHG 378 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~ 378 (391)
++++|+|++.+
T Consensus 105 ----~~~~Gldi~~~ 115 (185)
T 2jgn_A 105 ----VAARGLDISNV 115 (185)
T ss_dssp ----------CCCSB
T ss_pred ----hhhcCCCcccC
Confidence 99999999754
No 97
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.21 E-value=8.7e-05 Score=75.50 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=56.1
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC----CeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS----QRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~----~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+++-|.+++. ..+..++|.|+.|||||.+...-+...+..+ .++|++++|+..+.++.+++....+
T Consensus 9 ~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 48999999997 3467899999999999998776666666542 5899999999999999999988743
No 98
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=98.17 E-value=1.4e-06 Score=75.93 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=60.7
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
.++..+.+.+....++++||||+++..++.++..|.+.|+.+ ..+|..+.+.|++ ..++|++|+
T Consensus 17 ~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------- 89 (212)
T 3eaq_A 17 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------- 89 (212)
T ss_dssp SHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-------
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-------
Confidence 456677777777777899999999999999999998876554 4778888888887 567888885
Q ss_pred hHHHHHHhhhhhcc
Q psy6275 364 NILPLLRRGIGIHH 377 (391)
Q Consensus 364 ~~~~~l~~GI~~~h 377 (391)
++++|||++.
T Consensus 90 ----~~~~Gidi~~ 99 (212)
T 3eaq_A 90 ----VAARGLDIPQ 99 (212)
T ss_dssp ----TTTCSSSCCC
T ss_pred ----hhhcCCCCcc
Confidence 8999999974
No 99
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=98.11 E-value=3.3e-06 Score=77.47 Aligned_cols=75 Identities=20% Similarity=0.251 Sum_probs=61.1
Q ss_pred ccHHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCC--------hHHHHHHHHHHHH-HhhhcchhhccCcchH
Q psy6275 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNE--------TEEVKLVDDVFSN-AMDVLSEEDRKLPQIE 363 (391)
Q Consensus 293 ~~~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~--------~~~r~~~~~~~~~-~~~~l~~~d~~~~~~~ 363 (391)
+++..+.+.+.....+++||||++++.++.++..|...|+.+ ..+|..+.+.|++ ..++|++|+
T Consensus 14 ~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------- 86 (300)
T 3i32_A 14 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------- 86 (300)
T ss_dssp SHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-------
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-------
Confidence 455677777777667899999999999999999998876654 3678888888887 668888885
Q ss_pred hHHHHHHhhhhhccC
Q psy6275 364 NILPLLRRGIGIHHG 378 (391)
Q Consensus 364 ~~~~~l~~GI~~~h~ 378 (391)
++++|||++..
T Consensus 87 ----va~~Gidi~~v 97 (300)
T 3i32_A 87 ----VAARGLDIPQV 97 (300)
T ss_dssp ----TTTCSTTCCCC
T ss_pred ----hhhcCccccce
Confidence 89999999753
No 100
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=97.30 E-value=6e-07 Score=75.33 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=54.1
Q ss_pred HHHHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCCCh--------HHHHHHHHHHHH-HhhhcchhhccCcchHhH
Q psy6275 295 CFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNET--------EEVKLVDDVFSN-AMDVLSEEDRKLPQIENI 365 (391)
Q Consensus 295 ~~~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~~~--------~~r~~~~~~~~~-~~~~l~~~d~~~~~~~~~ 365 (391)
...+.+++...+.+++||||+++..|+.++..|...|+.+. .+|..+.+.|++ ...+|++|
T Consensus 18 ~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT---------- 87 (170)
T 2yjt_D 18 TALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT---------- 87 (170)
Confidence 33555555555567999999999999999999988766543 556667777766 44555555
Q ss_pred HHHHHhhhhhccC
Q psy6275 366 LPLLRRGIGIHHG 378 (391)
Q Consensus 366 ~~~l~~GI~~~h~ 378 (391)
+++++|+|++.+
T Consensus 88 -~~~~~Gid~~~~ 99 (170)
T 2yjt_D 88 -DVAARGIDIPDV 99 (170)
Confidence 699999999754
No 101
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.84 E-value=5.5e-05 Score=63.66 Aligned_cols=118 Identities=13% Similarity=0.101 Sum_probs=64.2
Q ss_pred cHHHHHHHHHHh---------cCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce
Q psy6275 59 DPFQKEAILCIE---------NNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128 (391)
Q Consensus 59 ~~~Q~~~i~~i~---------~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~ 128 (391)
.+.|.+++..+. .++.+++.||+|+|||..+...+-... ..+..++++ +..++...+...+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~---- 90 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFRLKHLMDEGK---- 90 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHHhcCch----
Confidence 567888877542 468899999999999987644433332 334455444 44555555443332210
Q ss_pred eeeCCcccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccC-ccccchhHHHHHHHh-CCCCcEEEEcccCCC
Q psy6275 129 LITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMR-DKERGYVWEETLILL-SDNVRFVFLSATIPN 206 (391)
Q Consensus 129 ~~~g~~~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~-~~~~~~~~~~i~~~~-~~~~~~i~~SAT~~~ 206 (391)
.. .+...+ .+.+++|+||++... +......+..++... ..+..+|+.|-..+.
T Consensus 91 -----------~~-------~~~~~~-------~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 91 -----------DT-------KFLKTV-------LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp -----------CS-------HHHHHH-------HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred -----------HH-------HHHHHh-------cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 00 122222 267899999998532 221122333344333 244556555555444
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.78 E-value=0.00028 Score=66.63 Aligned_cols=127 Identities=11% Similarity=0.191 Sum_probs=80.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHH-HH-hcCCeEEEEcccHHHHHHHHHHHHHhcccce---
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAS-SL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVG--- 128 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~-~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~--- 128 (391)
.+|.++|+|...+..+...+.+++..+-+.|||.+....++. .+ ..+..+++++|++..+..++..+..+.....
T Consensus 160 ~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll 239 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (385)
T ss_dssp EECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTT
T ss_pred CCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhh
Confidence 457899999999987755677899999999999976554444 23 3456899999999999888877776654111
Q ss_pred ---e-eeCC--cccCCCCCEEEE--cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh
Q psy6275 129 ---L-ITGD--VTINPSSSCLIM--TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL 191 (391)
Q Consensus 129 ---~-~~g~--~~~~~~~~I~v~--Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~ 191 (391)
. .... ........|.+. +|+.+. + ...+++|+||+|.+.+. ...+..+...+
T Consensus 240 ~~~~~~~~~~~I~f~nGs~i~~lsa~~~slr-----G----~~~~~viiDE~a~~~~~--~el~~al~~~l 299 (385)
T 2o0j_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAVR-----G----NSFAMIYIEDCAFIPNF--HDSWLAIQPVI 299 (385)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECSHHHHH-----T----SCCSEEEEESGGGSTTH--HHHHHHHHHHH
T ss_pred hhhhccCCccEEEeCCCCEEEEEECCCCCcc-----C----CCCCEEEechhhhcCCC--HHHHHHHHHHh
Confidence 0 0010 111112333332 243331 1 15789999999987531 23444444333
No 103
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.69 E-value=0.00084 Score=67.52 Aligned_cols=140 Identities=11% Similarity=0.158 Sum_probs=86.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHH-HHh-cCCeEEEEcccHHHHHHHHHHHHHhccccee--
Q psy6275 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIAS-SLK-QSQRVIYTTPIKALSNQKYREFEEQFKDVGL-- 129 (391)
Q Consensus 54 ~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~-~l~-~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~-- 129 (391)
.++.++++|...+..+...+..++.++-|+|||.+....++. .+. .+.++++++|++..+.+++..++........
T Consensus 160 ~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~ 239 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFL 239 (592)
T ss_dssp BBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTT
T ss_pred ccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhh
Confidence 457899999999987755678999999999999976543333 333 3458999999999999998888777652210
Q ss_pred ----e-eCCc--ccCCCCCEEEE--cHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCC--CCcEE
Q psy6275 130 ----I-TGDV--TINPSSSCLIM--TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSD--NVRFV 198 (391)
Q Consensus 130 ----~-~g~~--~~~~~~~I~v~--Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~--~~~~i 198 (391)
. .... .......|.+. .|+.+.. ...+++|+||+|.+.+. ...+..+...+.. +.+++
T Consensus 240 ~~~~~~~~~~~i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~~~~--~~l~~~~~~~l~~~~~~~ii 308 (592)
T 3cpe_A 240 QPGIVEWNKGSIELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFIPNF--HDSWLAIQPVISSGRRSKII 308 (592)
T ss_dssp SCCEEEECSSEEEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGCTTH--HHHHHHHHHHHSSSSCCEEE
T ss_pred ccccccCCccEEEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccCCch--hHHHHHHHHHhccCCCceEE
Confidence 0 0100 11112333322 2443321 14789999999987542 2445555444432 34444
Q ss_pred EEcccCC
Q psy6275 199 FLSATIP 205 (391)
Q Consensus 199 ~~SAT~~ 205 (391)
. ..|+.
T Consensus 309 ~-isTP~ 314 (592)
T 3cpe_A 309 I-TTTPN 314 (592)
T ss_dssp E-EECCC
T ss_pred E-EeCCC
Confidence 3 33443
No 104
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.62 E-value=0.00016 Score=69.34 Aligned_cols=84 Identities=14% Similarity=0.046 Sum_probs=55.8
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNM 153 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~ 153 (391)
-.++.|+.|+|||......+ ...+.+|++||++++.++.+++.+.. . ......-|.|-+.++.
T Consensus 163 v~~I~G~aGsGKTt~I~~~~-----~~~~~lVlTpT~~aa~~l~~kl~~~~--------~---~~~~~~~V~T~dsfL~- 225 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRV-----NFEEDLILVPGRQAAEMIRRRANASG--------I---IVATKDNVRTVDSFLM- 225 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHC-----CTTTCEEEESCHHHHHHHHHHHTTTS--------C---CCCCTTTEEEHHHHHH-
T ss_pred EEEEEcCCCCCHHHHHHHHh-----ccCCeEEEeCCHHHHHHHHHHhhhcC--------c---cccccceEEEeHHhhc-
Confidence 46899999999998754332 12567999999999998887774321 0 1122345778887542
Q ss_pred HhcCccccCccceEEEeccccc
Q psy6275 154 LYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 154 l~~~~~~l~~~~~lViDE~h~~ 175 (391)
.......-..+++|+||+-.+
T Consensus 226 -~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 226 -NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp -TTTSSCCCCCSEEEEETGGGS
T ss_pred -CCCCCCCCcCCEEEEeCcccC
Confidence 222211124899999999865
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.59 E-value=0.00017 Score=61.05 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=32.1
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~ 110 (391)
.++-.++.||+|+|||+.++-.+.+....+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 3566889999999999987766666666788999998874
No 106
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.50 E-value=0.00078 Score=58.68 Aligned_cols=113 Identities=14% Similarity=0.105 Sum_probs=65.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
.|.-.++.|++|+|||+..+-.+.+....+.+++++.|...-- . ........++ . ...+-+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r---~--~~~i~srlG~-------~-~~~~~~~~~~~i 77 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTR---S--IRNIQSRTGT-------S-LPSVEVESAPEI 77 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGG---G--CSSCCCCCCC-------S-SCCEEESSTHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCch---H--HHHHHHhcCC-------C-ccccccCCHHHH
Confidence 4567889999999999988777777777888999998765310 0 0011111111 0 112335556666
Q ss_pred HHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~S 201 (391)
+..+..... -..+++||+||++.+.. ..++.+......+.++++..
T Consensus 78 ~~~i~~~~~-~~~~dvViIDEaQ~l~~----~~ve~l~~L~~~gi~Vil~G 123 (223)
T 2b8t_A 78 LNYIMSNSF-NDETKVIGIDEVQFFDD----RICEVANILAENGFVVIISG 123 (223)
T ss_dssp HHHHHSTTS-CTTCCEEEECSGGGSCT----HHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHhh-CCCCCEEEEecCccCcH----HHHHHHHHHHhCCCeEEEEe
Confidence 666554321 23589999999997632 23333333223355555543
No 107
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.45 E-value=0.00044 Score=58.82 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=33.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~ 110 (391)
.|+-.++.||+|+|||+..+-.+.+...++.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 3556789999999999988877777777899999999874
No 108
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.39 E-value=0.00022 Score=58.15 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=23.7
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.++.+++.||+|+|||.......-.....+.+++++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~ 70 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYI 70 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEE
Confidence 678899999999999987544433332334344444
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.39 E-value=0.00031 Score=60.51 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=32.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~ 111 (391)
|+-.+++|+.|+|||+.++-.+.+....+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 4556789999999999988888888888999999998764
No 110
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.32 E-value=0.00044 Score=58.61 Aligned_cols=39 Identities=8% Similarity=-0.015 Sum_probs=33.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
.++-.++.||.|+|||.-.+-.+-+....+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 467789999999999987777777777788999999887
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.26 E-value=0.002 Score=59.38 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=25.4
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
..+++.||+|+|||..+-...-.....+..++++..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 589999999999998765444333334666777643
No 112
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.23 E-value=0.0027 Score=52.88 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=17.8
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
..++++.||+|+|||..+....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 5689999999999998764443
No 113
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.23 E-value=0.0014 Score=57.14 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=24.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.++++++.||+|+|||..+....-.....+..++++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~ 86 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYI 86 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 467899999999999987654443333344555555
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0039 Score=57.24 Aligned_cols=118 Identities=7% Similarity=0.075 Sum_probs=59.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc-------CCeEEEEcccH-----HHHHHHHHHHHHhcccceeeeCCcccCC
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-------SQRVIYTTPIK-----ALSNQKYREFEEQFKDVGLITGDVTINP 138 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~-------~~~vlvl~P~~-----~L~~q~~~~~~~~~~~v~~~~g~~~~~~ 138 (391)
.+.+++++||||+|||.+.-..+-..-.. ...++.+--.. .....+++.+ .+ . ....
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L---~g-------~-~~~~ 112 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAI---SK-------E-NLCG 112 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHH---SC-------C-C--C
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHh---cC-------C-CCCc
Confidence 45689999999999998864444332211 23455553211 2222332222 11 1 0000
Q ss_pred CCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHh---CCCCcEEEEcccCCCh
Q psy6275 139 SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILL---SDNVRFVFLSATIPNA 207 (391)
Q Consensus 139 ~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~---~~~~~~i~~SAT~~~~ 207 (391)
-.+-+.+..++......-...-++++||+|.+.+ ...+..++... ..+.-+|+.++|+...
T Consensus 113 -----~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 113 -----DISLEALNFYITNVPKAKKRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp -----CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSCCC
T ss_pred -----hHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcccc
Confidence 0122344444443211223566999999999872 22333343322 2235577788887654
No 115
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.05 E-value=0.0007 Score=58.21 Aligned_cols=41 Identities=12% Similarity=0.110 Sum_probs=32.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~ 111 (391)
.|.-.+++||.|+|||+..+-.+.+....+.+++++.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 46667899999999998776666666677889999999764
No 116
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.04 E-value=0.0019 Score=60.67 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=17.7
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
+.+++++||+|+|||.......
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~ 65 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVL 65 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 4689999999999998764433
No 117
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.04 E-value=0.00088 Score=58.27 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=35.1
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKA 111 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~ 111 (391)
.|+-.+++|+.|+|||+..+-.+.+....+.+++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 46677899999999999988888888888999999988764
No 118
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.02 E-value=0.0017 Score=55.41 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=24.2
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+++++.||+|+|||..+..........+..++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 7899999999999987654443343445566555
No 119
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.00 E-value=0.0012 Score=60.68 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=27.0
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~ 107 (391)
++++++.||+|+|||..+........ ..+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 57899999999999998765555555 5666676653
No 120
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.99 E-value=0.0093 Score=49.58 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=17.6
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
..+++++||+|+|||..+...+
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 3679999999999998764433
No 121
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.93 E-value=0.0023 Score=61.79 Aligned_cols=101 Identities=17% Similarity=0.215 Sum_probs=52.8
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
..+++.||+|+|||..+....-..... +.+++++.. ..+..++...+... ..+.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-~~~~~~~~~~~~~~----------------------~~~~~ 187 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVDSMKEG----------------------KLNEF 187 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-HHHHHHHHHHHHTT----------------------CHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHcc----------------------cHHHH
Confidence 579999999999998764433333222 556666643 33433333322210 11122
Q ss_pred HHHHhcCccccC-ccceEEEecccccCcc-ccchhHHHHHHH-hCCCCcEEEEccc
Q psy6275 151 RNMLYRGSEITR-EVGWVIFDEIHYMRDK-ERGYVWEETLIL-LSDNVRFVFLSAT 203 (391)
Q Consensus 151 ~~~l~~~~~~l~-~~~~lViDE~h~~~~~-~~~~~~~~i~~~-~~~~~~~i~~SAT 203 (391)
... +. ..+++++||+|.+.+. .....+..++.. ...+.++++.|..
T Consensus 188 ~~~-------~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 188 REK-------YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp HHH-------HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred HHH-------hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 221 22 5789999999998642 111122223322 3445566554443
No 122
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.91 E-value=0.0026 Score=64.03 Aligned_cols=114 Identities=18% Similarity=0.239 Sum_probs=75.2
Q ss_pred CCcHHHHHHHHHHhc--CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCc
Q psy6275 57 VLDPFQKEAILCIEN--NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDV 134 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~--~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~ 134 (391)
.+|.-|.+++..+.. ....++.|+-|.|||.+.-+.+... ..+++|.+|+.+-+..+.+-..+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~---~~~~~vtAP~~~a~~~l~~~~~~------------ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI---AGRAIVTAPAKASTDVLAQFAGE------------ 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS---SSCEEEECSSCCSCHHHHHHHGG------------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH---HhCcEEECCCHHHHHHHHHHhhC------------
Confidence 589999999998865 4457999999999997654444333 23579999998876654432211
Q ss_pred ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 135 TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 135 ~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
.|-+..|+.+.. .....+++|||||=.+. .+.+..++. .-..++||.|...
T Consensus 240 ------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~----~~~~v~~~tTv~G 290 (671)
T 2zpa_A 240 ------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVS----RFPRTLLTTTVQG 290 (671)
T ss_dssp ------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHT----TSSEEEEEEEBSS
T ss_pred ------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHh----hCCeEEEEecCCc
Confidence 144556765431 23368999999998763 334444443 2335777778654
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.91 E-value=0.0037 Score=58.86 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc--------CCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ--------SQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~--------~~~vlvl~ 107 (391)
.+.+++.||+|+|||..+...+-..... +..++++.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 4579999999999998764443332222 55666664
No 124
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.87 E-value=0.011 Score=52.96 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=17.0
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.++++.||+|+|||..+....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia 85 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIA 85 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 579999999999998764433
No 125
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.84 E-value=0.0017 Score=70.79 Aligned_cols=69 Identities=22% Similarity=0.206 Sum_probs=55.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhcC------CeEEEEcccHHHHHHHHHHHHHh
Q psy6275 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS------QRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 53 ~~~~~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~------~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
..+..+|+-|.++|.. .+++++|.|+.|||||.+.+.-+...+..+ .+++++++|++.+.++..++...
T Consensus 6 ~~~~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 6 PADSTWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp ----CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 3456799999999975 488999999999999999877677766543 48999999999999999888774
No 126
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.78 E-value=0.007 Score=56.72 Aligned_cols=36 Identities=19% Similarity=0.419 Sum_probs=23.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~ 107 (391)
++.+++.||+|+|||......+-..... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 5689999999999998764433222222 45666654
No 127
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.72 E-value=0.0021 Score=65.71 Aligned_cols=67 Identities=21% Similarity=0.216 Sum_probs=55.0
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+++-|.+++.. .+.+++|.|+.|||||.+...-+...+.. ..++|+++.|+..+.++.+++....+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999975 46789999999999999876655555532 46899999999999999999987653
No 128
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.71 E-value=0.0033 Score=64.70 Aligned_cols=66 Identities=20% Similarity=0.200 Sum_probs=54.6
Q ss_pred CCcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 57 VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 57 ~~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.+++-|.+|+.. .+.+++|.|+.|||||.+...-+...+.. ..++|+++.|+..+.++.+++....
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 389999999875 46789999999999999876666666543 3589999999999999999888764
No 129
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.69 E-value=0.0057 Score=56.72 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=28.1
Q ss_pred CcHHHHHHHHHH----hcCC---cEEEEecCCcchHHHHHHHHHHH
Q psy6275 58 LDPFQKEAILCI----ENNQ---SVLVSAHTSAGKTVVAEYAIASS 96 (391)
Q Consensus 58 ~~~~Q~~~i~~i----~~~~---~~li~apTGsGKT~~~~~~~~~~ 96 (391)
+.|||.+++..+ .+++ .+++.||+|+|||..+...+-..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 358888887654 3443 38999999999998866555443
No 130
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.66 E-value=0.019 Score=55.05 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=69.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
..++++|++|+|||+.....+......+.+++++. +.+.-+.+....+....+ +.+...... ..|..+
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~g-v~~~~~~~~---------~dp~~i 167 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIG-VQVYGEPNN---------QNPIEI 167 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTT-CCEECCTTC---------SCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcC-Cceeecccc---------CCHHHH
Confidence 35789999999999987554444445677887765 444444333333333221 212211111 124333
Q ss_pred H-HHHhcCccccCccceEEEecccccC---ccccchhHHHHHHHhCCCCcEEEEcccCCCh-HHHHHHh
Q psy6275 151 R-NMLYRGSEITREVGWVIFDEIHYMR---DKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWV 214 (391)
Q Consensus 151 ~-~~l~~~~~~l~~~~~lViDE~h~~~---~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~-~~~~~~l 214 (391)
. ..+... ....++++|+|++.++. +...-..+..+.....+..-++.++|+.... ...+..+
T Consensus 168 ~~~al~~a--~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f 234 (433)
T 3kl4_A 168 AKKGVDIF--VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRF 234 (433)
T ss_dssp HHHHHHHT--TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHH
T ss_pred HHHHHHHH--HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHH
Confidence 2 222211 12478999999998653 2222233444555555556677788876443 3444443
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.65 E-value=0.0051 Score=57.88 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=23.0
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTT 107 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~ 107 (391)
.+++.||+|+|||...-...-..... +..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 79999999999998764433332222 35666664
No 132
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.49 E-value=0.0036 Score=50.26 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=18.3
Q ss_pred HHhcCCcEEEEecCCcchHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~ 89 (391)
....+.++++.||+|+|||..+
T Consensus 23 ~~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHHH
T ss_pred HhCCCCcEEEECCCCccHHHHH
Confidence 3456789999999999999864
No 133
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.44 E-value=0.0047 Score=49.69 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=18.5
Q ss_pred hcCCcEEEEecCCcchHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~ 91 (391)
..+.++++.||+|+|||..+-.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHH
Confidence 4678999999999999987643
No 134
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.41 E-value=0.0032 Score=53.33 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=34.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
...++++..++|.|||.+++-..++.+..+.+|+++.-.
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~ 65 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFI 65 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 345899999999999999999999999999999999533
No 135
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.025 Score=48.18 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=16.2
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.++++.||+|+|||......
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l 58 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIAL 58 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46999999999999875433
No 136
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.16 E-value=0.008 Score=55.27 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=23.5
Q ss_pred CccceEEEecccccC-ccccchhHHHHHHHhCCCCcEEEEcc
Q psy6275 162 REVGWVIFDEIHYMR-DKERGYVWEETLILLSDNVRFVFLSA 202 (391)
Q Consensus 162 ~~~~~lViDE~h~~~-~~~~~~~~~~i~~~~~~~~~~i~~SA 202 (391)
...+++++||+|.+. .. ....+..++...+.+.++|+.|.
T Consensus 104 ~~~~vliiDEi~~l~~~~-~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAE-SQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHH-HHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHH-HHHHHHHHHHhCCCCcEEEEEeC
Confidence 367899999999885 22 22233334444444566666433
No 137
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.11 E-value=0.037 Score=50.23 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=16.6
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
+.++++.||+|+|||..+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34799999999999987643
No 138
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.07 E-value=0.034 Score=51.06 Aligned_cols=32 Identities=13% Similarity=0.244 Sum_probs=21.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+++++.||+|+|||..+-...-.. +..++.+
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v 82 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSV 82 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEE
Confidence 3579999999999998764433222 4444444
No 139
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=96.04 E-value=0.0062 Score=54.73 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=56.1
Q ss_pred ccHHHHHHHHHHc--CCCcEEEEEcchhhHHHHHHHhhcc-CCCC--------hHHHHHHHHHHHHH--hh-hcchhhcc
Q psy6275 293 TNCFKIVKMIMER--NLAPVIVFSFSKKDCEIYAMQMAKL-NFNE--------TEEVKLVDDVFSNA--MD-VLSEEDRK 358 (391)
Q Consensus 293 ~~~~~l~~~l~~~--~~~~~iIF~~t~~~~~~la~~L~~~-g~~~--------~~~r~~~~~~~~~~--~~-~l~~~d~~ 358 (391)
.++..+.+++... .+.++||||+++..++.++..|... |+.. ..+|+.+.+.|++. .. .|++++
T Consensus 96 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~-- 173 (271)
T 1z5z_A 96 GKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK-- 173 (271)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC--
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh--
Confidence 4555666666553 5679999999999999999999863 5543 47888888888875 23 456664
Q ss_pred CcchHhHHHHHHhhhhhccCC
Q psy6275 359 LPQIENILPLLRRGIGIHHGV 379 (391)
Q Consensus 359 ~~~~~~~~~~l~~GI~~~h~~ 379 (391)
+.++|+++..++
T Consensus 174 ---------~~g~Glnl~~a~ 185 (271)
T 1z5z_A 174 ---------AGGFGINLTSAN 185 (271)
T ss_dssp ---------TTCCCCCCTTCS
T ss_pred ---------hhcCCcCcccCC
Confidence 778899987554
No 140
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.97 E-value=0.033 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=17.7
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
..+.+++.||+|+|||..+-..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~l 71 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAV 71 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 4578999999999999875433
No 141
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.95 E-value=0.016 Score=51.57 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.1
Q ss_pred hcCCcEEEEecCCcchHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~ 91 (391)
..+.++++.||+|+|||..+-.
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~ 48 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASR 48 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHH
Confidence 4567899999999999987533
No 142
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.94 E-value=0.048 Score=46.95 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=28.0
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
..|..+++.||+|+|||+.....+......+.+++++.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 35678899999999999876555544445567787775
No 143
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.92 E-value=0.039 Score=54.27 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=23.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+.++++||+|+|||..+...+-. + +..++.+..
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~-l--~~~~i~in~ 110 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQE-L--GYDILEQNA 110 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH-T--TCEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-c--CCCEEEEeC
Confidence 67999999999999876444332 2 566666644
No 144
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.86 E-value=0.063 Score=51.42 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=65.0
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
..++++|++|+|||++..-.+......+.+++++. |.+.-+.+....+....+ +.+...... ..|..+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~g-vpv~~~~~~---------~dp~~i 170 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYH-IEVFGNPQE---------KDAIKL 170 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGT-CEEECCTTC---------CCHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcC-CcEEecCCC---------CCHHHH
Confidence 35789999999999987555544445677887775 555555444444443332 212211110 124333
Q ss_pred H-HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCCC
Q psy6275 151 R-NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIPN 206 (391)
Q Consensus 151 ~-~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~ 206 (391)
. ..+.... -..++++|+|.+-.+... ..-..+..+.....+..-++.+.|+...
T Consensus 171 ~~~al~~a~--~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq 226 (443)
T 3dm5_A 171 AKEGVDYFK--SKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ 226 (443)
T ss_dssp HHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred HHHHHHHHH--hCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch
Confidence 2 2222111 125899999999765321 1111233344444455567777887643
No 145
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.85 E-value=0.024 Score=52.62 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=24.8
Q ss_pred cCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccC
Q psy6275 161 TREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204 (391)
Q Consensus 161 l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 204 (391)
..+.+++|+||+|.+. ......+..++...+.+..+|+.|..+
T Consensus 132 ~~~~~vlilDE~~~L~-~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANSLT-KDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTSSC-HHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccccC-HHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 3467899999999853 222333444444445555566655544
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.049 Score=49.64 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=16.4
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||+|+|||..+....
T Consensus 48 ~~ll~G~~G~GKT~la~~l~ 67 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALA 67 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 69999999999998764433
No 147
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.65 E-value=0.23 Score=46.15 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.2
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
+.+++.||+|+|||..+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la 91 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMA 91 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999998764443
No 148
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.64 E-value=0.069 Score=47.02 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=16.9
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.+++.||+|+|||..+-..
T Consensus 39 ~~~vll~G~~GtGKT~la~~l 59 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAV 59 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457899999999999875433
No 149
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.64 E-value=0.021 Score=52.81 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=31.1
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
..|.-+++.|++|+|||..++-.+......+..|+|+..
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 456779999999999998877666666567888888864
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.44 E-value=0.11 Score=44.71 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.7
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.||+|+|||......
T Consensus 47 ~~ll~G~~G~GKT~l~~~~ 65 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLL 65 (250)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999875433
No 151
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.43 E-value=0.067 Score=51.54 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=29.2
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P 108 (391)
..|.-+++.|++|+|||...+..+..... .+.+|+|+..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 34567899999999999877666666554 4667888754
No 152
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.42 E-value=0.1 Score=47.88 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=16.2
Q ss_pred CcEEEEecCCcchHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~ 91 (391)
+.+++.||+|+|||..+-.
T Consensus 46 ~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp SEEEEESSSSSCHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 6799999999999987543
No 153
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.37 E-value=0.096 Score=49.42 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=22.7
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.+++++.||+|+|||..+-...-. .+..++.+.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence 478999999999999876443222 2445555443
No 154
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.33 E-value=0.095 Score=48.83 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=17.5
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||..+-..+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala 105 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVA 105 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHH
Confidence 3579999999999998764433
No 155
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.27 E-value=0.05 Score=46.48 Aligned_cols=35 Identities=20% Similarity=0.151 Sum_probs=26.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.|.-+++.||+|+|||+.+...+. ..+.+++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 467789999999999987654444 45678888753
No 156
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.15 Score=48.13 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=21.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+.+++.||+|+|||+.+-..+-+. +...+.+
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v 213 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHT---DCKFIRV 213 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEE
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhh---CCCceEE
Confidence 4789999999999998754443332 4444444
No 157
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.18 E-value=0.028 Score=54.25 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=16.4
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.+++++||+|+|||..+-..
T Consensus 51 ~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHH
Confidence 46999999999999875433
No 158
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.14 E-value=0.13 Score=47.04 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=35.2
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
..|.-+++.|++|+|||..++..+.....++.+++|+... .-..|+..++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHH
Confidence 4567799999999999987766666666667788888643 23344444443
No 159
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.14 E-value=0.064 Score=50.69 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=16.7
Q ss_pred CCcEEE--EecCCcchHHHHHHHH
Q psy6275 72 NQSVLV--SAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li--~apTGsGKT~~~~~~~ 93 (391)
+..+++ +||+|+|||.......
T Consensus 50 ~~~~li~i~G~~G~GKT~L~~~~~ 73 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLAKFTV 73 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHHHHHH
Confidence 346788 8999999998764443
No 160
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.13 E-value=0.071 Score=49.05 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=16.7
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.++++.||+|+|||..+...
T Consensus 56 ~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHH
Confidence 58999999999999875443
No 161
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.13 E-value=0.084 Score=48.74 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=18.3
Q ss_pred HHhcC--CcEEEEecCCcchHHHHHH
Q psy6275 68 CIENN--QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 68 ~i~~~--~~~li~apTGsGKT~~~~~ 91 (391)
.+..+ .++++.||+|+|||..+..
T Consensus 52 ~l~~~~~~~~ll~G~~G~GKT~la~~ 77 (353)
T 1sxj_D 52 TLKSANLPHMLFYGPPGTGKTSTILA 77 (353)
T ss_dssp HTTCTTCCCEEEECSTTSSHHHHHHH
T ss_pred HHhcCCCCEEEEECCCCCCHHHHHHH
Confidence 34444 5699999999999987543
No 162
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.12 E-value=0.013 Score=54.69 Aligned_cols=39 Identities=21% Similarity=0.211 Sum_probs=31.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
.|+.+++.||+|+|||...+..+......+.+++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 356799999999999998777766666678888888654
No 163
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.08 E-value=0.021 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=18.0
Q ss_pred hcCCcEEEEecCCcchHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~ 91 (391)
..+.++++.||||+|||..+-.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHHH
Confidence 3467899999999999987543
No 164
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.08 E-value=0.2 Score=45.37 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~ 148 (391)
++.++++||+|+|||+.....+.... ..+.+++++. +.+..+.+....+.+..+ +.... ...+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~g-l~~~~------------~~~~~ 171 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQ-APLEV------------CYTKE 171 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTT-CCCCB------------CSSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcC-CCeEe------------cCCHH
Confidence 56788999999999987654443333 3565777664 333333332233322211 11100 01344
Q ss_pred HHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHHhC---CCCcEEEEcccCCChHHHHHHh
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLS---DNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~---~~~~~i~~SAT~~~~~~~~~~l 214 (391)
.+...+.. +.+.+++|+|.+-.... ....+..+...+. ....++.+.+|. ...++.++.
T Consensus 172 ~l~~al~~----~~~~dlvIiDT~G~~~~--~~~~~~el~~~l~~~~~~~~~lVl~at~-~~~~~~~~~ 233 (296)
T 2px0_A 172 EFQQAKEL----FSEYDHVFVDTAGRNFK--DPQYIDELKETIPFESSIQSFLVLSATA-KYEDMKHIV 233 (296)
T ss_dssp HHHHHHHH----GGGSSEEEEECCCCCTT--SHHHHHHHHHHSCCCTTEEEEEEEETTB-CHHHHHHHT
T ss_pred HHHHHHHH----hcCCCEEEEeCCCCChh--hHHHHHHHHHHHhhcCCCeEEEEEECCC-CHHHHHHHH
Confidence 44443432 35789999997654321 1223334444443 222366676664 333444443
No 165
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.07 E-value=0.082 Score=51.09 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=29.3
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P 108 (391)
..|.-+++.|++|+|||...+..+..... .+.+|+|+..
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 35677999999999999877666655544 4667888864
No 166
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.06 E-value=0.051 Score=49.58 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=15.7
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
..++.||.|+|||..+...
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~l 38 (305)
T 2gno_A 20 SILINGEDLSYPREVSLEL 38 (305)
T ss_dssp EEEEECSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999875443
No 167
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.06 E-value=0.078 Score=48.99 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=18.7
Q ss_pred HhcCCc--EEEEecCCcchHHHHHHHH
Q psy6275 69 IENNQS--VLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 69 i~~~~~--~li~apTGsGKT~~~~~~~ 93 (391)
+..|+- +++.||+|+|||..+...+
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~~la 67 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIVALA 67 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHH
Confidence 445543 8999999999998765443
No 168
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.00 E-value=0.037 Score=51.64 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=53.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEE---cH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIM---TT 147 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~---Tp 147 (391)
.++.+++.|++|+|||..++..+......+.+++|+.....+-.+.. ..+.... .++.+. +.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a---~~~g~~~------------~~l~i~~~~~~ 126 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA---RKLGVDI------------DNLLCSQPDTG 126 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHH---HHTTCCG------------GGCEEECCSSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHH---HHcCCCh------------hheeeeCCCCH
Confidence 45779999999999999887776666667788988876433322221 2221111 012222 33
Q ss_pred HHHHHHHhcCccccCccceEEEecccccC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
+.+...+..-. .-..+++||||.+..+.
T Consensus 127 e~~~~~~~~l~-~~~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 127 EQALEICDALA-RSGAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHHHHHHHHH-HHTCCSEEEEECGGGCC
T ss_pred HHHHHHHHHHH-hccCCCEEEEcCHHHhc
Confidence 44444332110 01368999999999875
No 169
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.99 E-value=0.1 Score=48.60 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=17.4
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.+++.||+|+|||..+-..
T Consensus 117 ~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 568999999999999876443
No 170
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.91 E-value=0.048 Score=50.78 Aligned_cols=48 Identities=29% Similarity=0.243 Sum_probs=34.7
Q ss_pred HHHHHhc------CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q psy6275 65 AILCIEN------NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112 (391)
Q Consensus 65 ~i~~i~~------~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L 112 (391)
.++.++. |.-+++.||+|+|||+..+..+......+.+++|+.....+
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 3455554 46789999999999987766665555667889998765444
No 171
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.85 E-value=0.1 Score=50.17 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=31.4
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
..|.-+++.|++|+|||...+-.+.+...++.+++|+.-
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 346779999999999999887777776666788988864
No 172
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.81 E-value=0.2 Score=45.07 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.1
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
++.+++.||+|+|||..+-.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARA 73 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 57899999999999987543
No 173
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.78 E-value=0.058 Score=50.52 Aligned_cols=90 Identities=16% Similarity=0.143 Sum_probs=53.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEE---EcH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLI---MTT 147 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v---~Tp 147 (391)
.+..+++.||+|+|||..++..+......+.+++|+.....+. +.. ........ .++.+ .|.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~-~~~--a~~~g~d~------------~~l~i~~~~~~ 137 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALD-PVY--ARALGVNT------------DELLVSQPDNG 137 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC-HHH--HHHTTCCG------------GGCEEECCSSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChh-HHH--HHHcCCCH------------HHceeecCCcH
Confidence 3567899999999999887766666666778888887544332 221 11211111 01222 134
Q ss_pred HHHHHHHhcCccccCccceEEEecccccC
Q psy6275 148 EILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 148 ~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
+.++..+..... -..+++||||.+..+.
T Consensus 138 e~~l~~l~~l~~-~~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 138 EQALEIMELLVR-SGAIDVVVVDSVAALT 165 (366)
T ss_dssp HHHHHHHHHHHT-TTCCSEEEEECTTTCC
T ss_pred HHHHHHHHHHHh-cCCCCEEEEeChHHhc
Confidence 555444432111 1368999999999875
No 174
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.69 E-value=0.025 Score=52.10 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=29.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc------CCeEEEEcccH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVIYTTPIK 110 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~------~~~vlvl~P~~ 110 (391)
.|..+++.||+|+|||......+...... +.+++|+.-..
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35678999999999998876665554333 57888886543
No 175
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.62 E-value=0.094 Score=47.44 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.1
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+.+++.||+|+|||..+-..
T Consensus 37 ~~lLl~GppGtGKT~la~ai 56 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELV 56 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46889999999999875443
No 176
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.59 E-value=0.12 Score=46.20 Aligned_cols=41 Identities=20% Similarity=0.140 Sum_probs=28.0
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhc----------CCeEEEEccc
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----------SQRVIYTTPI 109 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~----------~~~vlvl~P~ 109 (391)
+..|.-+++.||+|+|||+.....+...... +.+++++.-.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e 77 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAE 77 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESS
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECC
Confidence 4578889999999999998765544432221 3567777543
No 177
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.33 E-value=0.079 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=17.2
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
..++++.||+|+|||..+...
T Consensus 38 ~~~vll~G~~GtGKT~la~~i 58 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVI 58 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHH
Confidence 368999999999999875443
No 178
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.33 E-value=0.11 Score=47.15 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=16.3
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||+|+|||..+....
T Consensus 44 ~~ll~G~~G~GKt~la~~l~ 63 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLA 63 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHH
Confidence 59999999999998754443
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.20 E-value=0.11 Score=48.34 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.6
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.||+|+|||..+...
T Consensus 40 ~~ll~G~~G~GKT~la~~l 58 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLL 58 (373)
T ss_dssp EEEEESCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999876443
No 180
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.19 E-value=0.084 Score=59.52 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=59.1
Q ss_pred HHHHhc------CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCC
Q psy6275 66 ILCIEN------NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPS 139 (391)
Q Consensus 66 i~~i~~------~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~ 139 (391)
+..++. ++++++.||+|+|||..+...+.....++.+++++.....+.... .+.+.-++.
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~----------- 1480 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID----------- 1480 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT-----------
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch-----------
Confidence 555554 789999999999999988777777777889999997664443332 222221110
Q ss_pred CCEEEEcH---HHHHHHHhcCccccCccceEEEecccccC
Q psy6275 140 SSCLIMTT---EILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 140 ~~I~v~Tp---~~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
.+.|..| +.+...+..... -..+++||+||++-+.
T Consensus 1481 -~l~v~~~~~~E~~l~~~~~lvr-~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 -NLLCSQPDTGEQALEICDALAR-SGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp -TCEEECCSSHHHHHHHHHHHHH-HTCCSEEEESCGGGCC
T ss_pred -hceeecCChHHHHHHHHHHHHh-cCCCCEEEEcChhHhc
Confidence 1222222 444444432111 1368999999997543
No 181
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.99 E-value=0.36 Score=43.58 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=24.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
++.+.++|++|+|||+.....+......+++++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 456778899999999876444333334577777764
No 182
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.93 E-value=0.06 Score=51.65 Aligned_cols=44 Identities=20% Similarity=0.332 Sum_probs=35.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSN 114 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~ 114 (391)
...++++.|+||+|||......+.+.+..+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 46789999999999999864445556667889999999988864
No 183
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.72 E-value=0.12 Score=50.43 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.2
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
...+++.||+|+|||..+-..
T Consensus 238 ~~~vLL~GppGtGKT~lArai 258 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAV 258 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHH
Confidence 467999999999999876433
No 184
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.67 E-value=0.077 Score=46.15 Aligned_cols=51 Identities=22% Similarity=0.257 Sum_probs=35.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFE 121 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~ 121 (391)
..|..+++.||+|+|||......+......+.+++++.-.. -..++...+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHH
Confidence 35678999999999999987666666666777888886432 2344444444
No 185
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.66 E-value=0.49 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=17.6
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||+.+-..+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHH
Confidence 3679999999999998754433
No 186
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.64 E-value=0.095 Score=50.47 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.7
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
.+.+++.||+|+|||..+-.
T Consensus 167 ~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 36799999999999987543
No 187
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.16 E-value=2.4 Score=38.52 Aligned_cols=35 Identities=17% Similarity=0.100 Sum_probs=24.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHHHH
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~~~ 93 (391)
-+.-+.+.+.. ...+.+++.||.|+|||.......
T Consensus 17 gR~~el~~L~~-l~~~~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 17 DREKEIEKLKG-LRAPITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp CCHHHHHHHHH-TCSSEEEEEESTTSSHHHHHHHHH
T ss_pred ChHHHHHHHHH-hcCCcEEEECCCCCCHHHHHHHHH
Confidence 34555555555 444789999999999998754433
No 188
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.00 E-value=0.16 Score=45.91 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=16.3
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||+|+|||..+....
T Consensus 40 ~~ll~G~~G~GKt~la~~l~ 59 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALA 59 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHH
Confidence 69999999999998754443
No 189
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.92 E-value=0.42 Score=49.27 Aligned_cols=20 Identities=30% Similarity=0.273 Sum_probs=16.5
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
++++.||||+|||..+-...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala 542 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALA 542 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 59999999999998764443
No 190
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.90 E-value=0.12 Score=51.13 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=17.1
Q ss_pred cCCcEEEEecCCcchHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~ 90 (391)
.+..+++.||+|+|||+.+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 36789999999999998754
No 191
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.84 E-value=0.11 Score=50.89 Aligned_cols=48 Identities=23% Similarity=0.234 Sum_probs=29.9
Q ss_pred CcHHHHHHHH-HHhcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 58 LDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 58 ~~~~Q~~~i~-~i~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+++.+.+.+. .+..|.+++++||||||||+.. ..++..+....+++.+
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL-~aL~~~i~~~~giiti 293 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL-NAIMMFIPPDAKVVSI 293 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH-HHHGGGSCTTCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhCCCCCCEEEE
Confidence 3344444444 3567889999999999999864 3344444444444444
No 192
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.49 E-value=0.28 Score=51.29 Aligned_cols=23 Identities=17% Similarity=0.247 Sum_probs=18.0
Q ss_pred CCcEEEEecCCcchHHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIA 94 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~ 94 (391)
..+++++||+|+|||..+...+.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999987644443
No 193
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.36 E-value=0.11 Score=48.98 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=34.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L 112 (391)
.+.++++.||||+|||...-..+.+....+.+++++-|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCH
Confidence 567899999999999988766666666678899999887654
No 194
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.29 E-value=0.16 Score=46.37 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=22.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+..+++.||+|+|||..+...+.. .+.+++|+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyI 154 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYA 154 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEE
Confidence 4566799999999999876555433 33444444
No 195
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.21 E-value=2.5 Score=38.67 Aligned_cols=124 Identities=12% Similarity=0.096 Sum_probs=61.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc-cc-HHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHH-
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT-PI-KALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE- 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~-P~-~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~- 148 (391)
+.-+.+.||+|+|||+..-..+......++++++.. ++ +.-+.+....+.+.. .+.++...... .|.
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~-gv~~v~q~~~~---------~p~~ 198 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRI-GVKVIKHSYGA---------DPAA 198 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHT-TCEEECCCTTC---------CHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHc-CceEEeccccC---------CHHH
Confidence 456889999999999875433322334566666653 32 222333233333322 12222221111 121
Q ss_pred HHHHHHhcCccccCccceEEEecccccCc-cccchhHHHHHHHhCCCCcEEEEcccCCCh
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMRD-KERGYVWEETLILLSDNVRFVFLSATIPNA 207 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~ 207 (391)
.+.+.+.... ....+++++|.+..... ...-..+..+...+..+..++.+.++....
T Consensus 199 ~v~e~l~~~~--~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~ 256 (328)
T 3e70_C 199 VAYDAIQHAK--ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNA 256 (328)
T ss_dssp HHHHHHHHHH--HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTH
T ss_pred HHHHHHHHHH--hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHH
Confidence 1112111110 12567889999876431 122223334445555667788888887554
No 196
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.97 E-value=0.11 Score=45.20 Aligned_cols=52 Identities=21% Similarity=0.225 Sum_probs=34.1
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHh
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQ 123 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~ 123 (391)
.|.-+++.|++|+|||...+..+.+.. ..+..++|+.-. .-..++..++...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHHHc
Confidence 467899999999999987765555543 446677777532 3344555555444
No 197
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.95 E-value=0.13 Score=45.73 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=24.6
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hc-CCeEEEE
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQ-SQRVIYT 106 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~-~~~vlvl 106 (391)
+..|+.+.++||||||||+..-..+ ..+ .. .+++++.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~-g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMI-DYINQTKSYHIITI 60 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHH-HHHHHHCCCEEEEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHH-HhCCCCCCCEEEEc
Confidence 4567889999999999998753322 222 22 4566554
No 198
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=91.88 E-value=0.22 Score=47.43 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=32.2
Q ss_pred CccCCCCCcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEE
Q psy6275 51 AREYPFVLDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYT 106 (391)
Q Consensus 51 ~~~~~~~~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl 106 (391)
+..+++ .+-+..++..+. .+..++++||||||||+.. ..++..+.. .++++++
T Consensus 146 l~~Lg~--~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 146 LHSLGM--TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNSSERNILTV 201 (418)
T ss_dssp GGGSCC--CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCCTTSCEEEE
T ss_pred HHHcCC--CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcCCCCCEEEEe
Confidence 444444 444555665443 3556899999999999874 334444433 4556555
No 199
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=91.69 E-value=0.99 Score=43.65 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.5
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+.+++.||+|+|||+.+-..
T Consensus 50 ~gvLL~GppGtGKT~Larai 69 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAV 69 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 56999999999999876433
No 200
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=91.67 E-value=0.28 Score=40.75 Aligned_cols=120 Identities=11% Similarity=-0.063 Sum_probs=72.2
Q ss_pred CcHHHHHHHHHHh--cCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCc
Q psy6275 58 LDPFQKEAILCIE--NNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDV 134 (391)
Q Consensus 58 ~~~~Q~~~i~~i~--~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~ 134 (391)
..+-|..++..+. ..+-.++.++-|++|+...+..++..- .+|.+|.+++|+..-.....+......
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~~l~~---------- 104 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDERLSG---------- 104 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTTTCSS----------
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhcCcCc----------
Confidence 4577899998774 345678899999999988544443332 468899999999887766543222111
Q ss_pred ccCCCCCEEEEcHHHHHHHHhcCccccCccceEEEecccccCccccchhHHHHHHH-hCCCCcEEEEccc
Q psy6275 135 TINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLIL-LSDNVRFVFLSAT 203 (391)
Q Consensus 135 ~~~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~-~~~~~~~i~~SAT 203 (391)
+++ |- ..+......|..=+.+|+|||..|.. ..+..++.. ...+.|+|++--+
T Consensus 105 ------~t~--t~----~~ll~~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~naqvvll~~~ 158 (189)
T 2l8b_A 105 ------ELI--TG----RRQLLEGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNVQVLITDSG 158 (189)
T ss_dssp ------CSS--ST----TTTTTTSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTCCEEEEESS
T ss_pred ------cee--eh----hhhhcCCCCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCCEEEEeCCc
Confidence 000 00 00111122234455899999998742 223333332 3456888887555
No 201
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.59 E-value=0.24 Score=55.13 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=55.6
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
.+..+++.||+|+|||..++..+...+..+.+++|+.-...........+..-...+.+.. + .+.+.+
T Consensus 33 ~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~--------p----~t~e~l 100 (1706)
T 3cmw_A 33 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQ--------P----DTGEQA 100 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEEC--------C----SSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeec--------c----CcHHHH
Confidence 3678999999999999988777777777888999996544322222111110001111110 1 144444
Q ss_pred HHHHhcCccccCccceEEEecccccCc
Q psy6275 151 RNMLYRGSEITREVGWVIFDEIHYMRD 177 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lViDE~h~~~~ 177 (391)
..++..-. .....++||||++..+..
T Consensus 101 ~~ll~~L~-~~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 101 LEICDALA-RSGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HHHHHHHH-HHTCCSEEEESCSTTCCC
T ss_pred HHHHHHHH-hccCCCEEEEcchhhhcc
Confidence 44333211 124689999999998743
No 202
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.47 E-value=0.19 Score=46.60 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=25.4
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHH---hc---CCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSL---KQ---SQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l---~~---~~~vlvl~P 108 (391)
.|.-+.+.||+|+|||......+.... .. +++++++.-
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 356688999999999987655443321 11 367777754
No 203
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.32 E-value=1.6 Score=41.50 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=59.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
+.+.++|++|+|||+.....+......+.+++++. +.+..+.++...+.... .+.++..+.. ..|..+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~-gv~v~~~~~~---------~~p~~i 168 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDG---------ESPESI 168 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTT---------CCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccC-CccEEecCCC---------CCHHHH
Confidence 45778899999999876544444434577777765 44444433323332221 2333332211 134433
Q ss_pred H-HHHhcCccccCccceEEEecccccCcc-ccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 151 R-NMLYRGSEITREVGWVIFDEIHYMRDK-ERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 151 ~-~~l~~~~~~l~~~~~lViDE~h~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
. ..+.... ...++++|+|=+-.+... ..-..+..+.....+..-++.+.|+-.
T Consensus 169 ~~~~l~~~~--~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg 223 (425)
T 2ffh_A 169 RRRVEEKAR--LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG 223 (425)
T ss_dssp HHHHHHHHH--HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred HHHHHHHHH--HCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch
Confidence 2 2222110 147899999977654321 011112223333344444555666643
No 204
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.68 E-value=0.92 Score=43.95 Aligned_cols=52 Identities=12% Similarity=0.058 Sum_probs=41.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
.+....+.|-||||||++....+.. .+..+||++|+...+.+++..++.+++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~---~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAER---HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHH---SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHH---hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 4567899999999999874433322 356799999999999999999998875
No 205
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.52 E-value=0.49 Score=53.47 Aligned_cols=93 Identities=14% Similarity=0.130 Sum_probs=56.4
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
..++++++.||+|+|||..+...+.+...++.+++|+. ..++.+++. ...+..++.-+. .. +++ +.+.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit-~ee~~~~L~--a~~~G~dl~~l~---~~--~pd----~~e~ 1146 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEHALDPIY--ARKLGVDIDNLL---CS--QPD----TGEQ 1146 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC-TTSCCCHHH--HHHTTCCTTTCE---EE--CCS----SHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-ccccHHHHH--HHHcCCChhHhe---ee--cCc----chHH
Confidence 35789999999999999998888888888899999885 444445554 223222221000 00 111 2232
Q ss_pred HHHHHhcCccccCccceEEEeccccc
Q psy6275 150 LRNMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 150 l~~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
.......- ......+++|+||+..+
T Consensus 1147 ~~~i~~~l-~~~~~~dlvVIDsl~~L 1171 (2050)
T 3cmu_A 1147 ALEICDAL-ARSGAVDVIVVDSVAAL 1171 (2050)
T ss_dssp HHHHHHHH-HHHTCCSEEEESCGGGC
T ss_pred HHHHHHHH-HHhCCCCEEEECCcccc
Confidence 22222111 11347899999998876
No 206
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=90.47 E-value=0.2 Score=47.02 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=24.8
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHh-c-CCeEEEE
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLK-Q-SQRVIYT 106 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~-~-~~~vlvl 106 (391)
+..++.++++||||||||+..-.. ...+. . .++++++
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l-~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASM-IDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHH-HHHHHHHSCCEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHH-HhhcCcCCCcEEEEe
Confidence 346778999999999999875333 23332 2 4666655
No 207
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.25 E-value=0.29 Score=42.48 Aligned_cols=39 Identities=23% Similarity=0.314 Sum_probs=27.1
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTT 107 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~ 107 (391)
+..|.-+.+.||+|+|||+.....+...+ ..+..++++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 35688899999999999987654443333 4555566654
No 208
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.80 E-value=0.35 Score=41.76 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=26.1
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
++++.++.|+|||...+-........+.+++++
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~ 40 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAG 40 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEE
Confidence 589999999999999776666666677777544
No 209
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.79 E-value=0.31 Score=45.32 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=23.3
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEE
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYT 106 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl 106 (391)
..+..++++||||||||+..- .++..+.. +.+++.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~-~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLA-AMLDYLNNTKYHHILTI 158 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHH-HHHHHHHHHCCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHH-HHHhcccCCCCcEEEEc
Confidence 456689999999999998743 33333332 4555444
No 210
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.75 E-value=0.21 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.1
Q ss_pred HHhcCCcEEEEecCCcchHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~ 89 (391)
.+..|+.++++||||||||+..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHHH
Confidence 3568899999999999999864
No 211
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.09 E-value=0.37 Score=41.06 Aligned_cols=32 Identities=28% Similarity=0.213 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHhcCCcEEEEecCCcchHHHHH
Q psy6275 59 DPFQKEAILCIENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 59 ~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~ 90 (391)
+.-|..++..+..|+-+.+.||.|+|||+..-
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 34566788888889999999999999998763
No 212
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.07 E-value=0.3 Score=44.54 Aligned_cols=88 Identities=11% Similarity=0.077 Sum_probs=54.0
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH---H
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT---E 148 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~--~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp---~ 148 (391)
.+++.||+|+|||...+..+...... +.+++|+....++... +++++.-+. .++++..| +
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd~------------d~llv~~~~~~E 94 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVDP------------ERVIHTPVQSLE 94 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCCG------------GGEEEEECSBHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCCH------------HHeEEEcCCCHH
Confidence 57899999999999877776666655 7899999876655332 233332111 13444443 4
Q ss_pred HH-HHHHhcCc-cccCccceEEEecccccC
Q psy6275 149 IL-RNMLYRGS-EITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l-~~~l~~~~-~~l~~~~~lViDE~h~~~ 176 (391)
.+ +..+..-. ..-..++++|+|=+..+.
T Consensus 95 ~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 95 QLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 44 33322110 112368999999999874
No 213
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.00 E-value=0.36 Score=43.44 Aligned_cols=39 Identities=10% Similarity=0.145 Sum_probs=27.8
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEc
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTT 107 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~ 107 (391)
+..|.-+++.||+|+|||+.....+...... +.+++++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3567889999999999998765544444334 44777774
No 214
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.65 E-value=0.42 Score=43.41 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=24.1
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+-++++|++|+|||+.....+......+.+++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 45789999999999876444333334567777664
No 215
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.60 E-value=0.28 Score=40.61 Aligned_cols=20 Identities=5% Similarity=0.252 Sum_probs=16.9
Q ss_pred cCCcEEEEecCCcchHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~ 90 (391)
.|+-++++||+|+|||+..-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 56778999999999998753
No 216
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=88.37 E-value=0.51 Score=42.84 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=24.8
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
.++.+.+.||+|+|||+..-..+...-..++++++..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3567889999999999875433322224466777664
No 217
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.29 E-value=0.62 Score=51.93 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=60.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcH---H
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT---E 148 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp---~ 148 (391)
|+.+.+.||.|||||+.++..+.+.-+.+..++++.+-.+|.... ++.+.-++ .++++.-| +
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~------------~~l~~~~p~~~e 1495 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDI------------DNLLCSQPDTGE 1495 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCG------------GGCEEECCSSHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCH------------HHeEEeCCCcHH
Confidence 467899999999999998888877878899999999988886665 33332111 12556655 4
Q ss_pred HHHHHHhcCccccCccceEEEecccccC
Q psy6275 149 ILRNMLYRGSEITREVGWVIFDEIHYMR 176 (391)
Q Consensus 149 ~l~~~l~~~~~~l~~~~~lViDE~h~~~ 176 (391)
..+..+..... -..+++||+|.+-.+.
T Consensus 1496 ~~l~~~~~~~~-s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1496 QALEICDALAR-SGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp HHHHHHHHHHH-HTCCSEEEESCSTTCC
T ss_pred HHHHHHHHHHH-cCCCCEEEEccHHhCC
Confidence 43333322111 1268899999998764
No 218
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.29 E-value=0.51 Score=39.04 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=24.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+..+++.|++|||||+..-...-..-..+.++.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 456789999999999997644433332345566555
No 219
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=88.13 E-value=0.29 Score=41.25 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=15.9
Q ss_pred cCCcEEEEecCCcchHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~ 90 (391)
.|+-+.++||+|+|||+..-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57789999999999998753
No 220
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.11 E-value=0.3 Score=41.04 Aligned_cols=25 Identities=16% Similarity=0.193 Sum_probs=18.9
Q ss_pred HhcCCcEEEEecCCcchHHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~~ 93 (391)
+..++.+++.|++|||||+..-...
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La 46 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFA 46 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHH
Confidence 3467889999999999999864433
No 221
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.00 E-value=0.24 Score=45.56 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=18.3
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+.+.++||||||||+..
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 467899999999999999853
No 222
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.74 E-value=0.52 Score=42.72 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=24.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+.-+.+.||+|+|||+..-..+-..-..++++++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456789999999999876433322224567777764
No 223
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.55 E-value=0.51 Score=40.70 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=26.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P 108 (391)
.|..+.+.||+|+|||+.....+...+. .+..++++.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 4678999999999999887655544322 2467777753
No 224
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=87.30 E-value=0.34 Score=40.64 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=17.6
Q ss_pred HhcCCcEEEEecCCcchHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~ 90 (391)
+..|+-+.+.||+|||||+..-
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHH
Confidence 3467788999999999998753
No 225
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.27 E-value=0.36 Score=40.95 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.9
Q ss_pred cCCcEEEEecCCcchHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~ 90 (391)
.|+-++++||+|+|||+..-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46778999999999998753
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.26 E-value=0.81 Score=47.21 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=15.8
Q ss_pred CcEEEEecCCcchHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~ 90 (391)
+.+++.||+|+|||+.+-
T Consensus 239 ~GILL~GPPGTGKT~LAr 256 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999998753
No 227
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=87.19 E-value=0.57 Score=42.84 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=24.8
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
++-+.++|++|+|||+.....+......+++++++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 345789999999999876444333334577777764
No 228
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.85 E-value=0.3 Score=40.00 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=16.6
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
++.++++|++|||||++.-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 56789999999999987543
No 229
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.62 E-value=0.34 Score=40.95 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=18.5
Q ss_pred HhcCCcEEEEecCCcchHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~ 90 (391)
+..++.++++||+|||||+..-
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHH
Confidence 4567889999999999998643
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=86.62 E-value=0.6 Score=42.04 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=21.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.++++.||+|+|||..+-...-.....+..++++
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 4799999999999987644433332223334444
No 231
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=86.60 E-value=0.4 Score=40.28 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=17.8
Q ss_pred HhcCCcEEEEecCCcchHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~ 90 (391)
+..|..+.+.||+|||||+..-
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHH
Confidence 3467789999999999998753
No 232
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.59 E-value=0.45 Score=38.69 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=17.2
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.+..+.+.||+|||||+..-.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~ 23 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQ 23 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 356799999999999987533
No 233
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.59 E-value=0.67 Score=44.22 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=17.6
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||+.+-..+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA 236 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACA 236 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHH
Confidence 4679999999999998754433
No 234
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.54 E-value=0.34 Score=44.58 Aligned_cols=21 Identities=14% Similarity=0.208 Sum_probs=16.8
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
++.++|+||||+|||......
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 357899999999999875443
No 235
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.43 E-value=0.51 Score=38.88 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=17.8
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.|++|||||+..-...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999764443
No 236
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.35 E-value=1.2 Score=36.62 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=23.4
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEEcccHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALS 113 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl~P~~~L~ 113 (391)
.+++.|++|||||+..-... +.+. .+..+.++ |.-++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~-~~l~~~g~~~~~~-~~~~~~ 41 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVK-EILDNQGINNKII-NYGDFM 41 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHHHTTTCCEEEE-EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHhcCceEEEE-ECChHH
Confidence 47899999999998764433 2333 33445555 544443
No 237
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.30 E-value=0.3 Score=40.58 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.0
Q ss_pred HhcCCcEEEEecCCcchHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~ 90 (391)
+..|+.+++.||+|||||+..-
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 3457789999999999998753
No 238
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.96 E-value=0.49 Score=43.20 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHhcCCcEEEEecCCcchHHHHH
Q psy6275 67 LCIENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 67 ~~i~~~~~~li~apTGsGKT~~~~ 90 (391)
..+..++++++.||+|+|||..+-
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHHH
Confidence 345668899999999999998754
No 239
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.94 E-value=0.76 Score=43.90 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=17.7
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||+.+-..+
T Consensus 215 prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 3779999999999998754433
No 240
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.73 E-value=0.74 Score=42.78 Aligned_cols=36 Identities=11% Similarity=0.174 Sum_probs=24.1
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+.-+.+.||+|+|||+..-..+-..-..++++++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 345789999999999876433322223567777764
No 241
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.51 E-value=0.48 Score=46.21 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=21.4
Q ss_pred HHHHHHhcCCcEEEEecCCcchHHHHH
Q psy6275 64 EAILCIENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 64 ~~i~~i~~~~~~li~apTGsGKT~~~~ 90 (391)
.+...+..+.++++.||+|+|||..+-
T Consensus 33 ~l~~al~~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 33 LCLLAALSGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHHTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHhcCCeeEeecCchHHHHHHHH
Confidence 334455778999999999999998753
No 242
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=85.44 E-value=0.44 Score=40.29 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.1
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.++-+++.||||+|||..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3566899999999999765433
No 243
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=85.40 E-value=0.42 Score=43.48 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=16.4
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
+.-++++||||+|||..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHH
Confidence 345789999999999875444
No 244
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.40 E-value=0.9 Score=42.12 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=17.9
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.++++.||+|+|||..+-..
T Consensus 50 ~~~~vll~GppGtGKT~la~~i 71 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETL 71 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4578999999999999975433
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=85.39 E-value=0.63 Score=42.94 Aligned_cols=39 Identities=10% Similarity=0.088 Sum_probs=28.5
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEcccH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTPIK 110 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P~~ 110 (391)
|..+++.||+|+|||......+..... .+.+++|+.-..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 456899999999999877665555332 367888886544
No 246
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=85.39 E-value=1.8 Score=46.95 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=41.2
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQ---SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~---~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~ 151 (391)
-+|.|+.|||||.+.+.-+...+.. +.+++++||... .-++..++....+ . ....++.|+|-..+.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~l~-------~---~~~~~~~V~TFhsla 72 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKTPD-------M---GGMIRAQVFSFSRLA 72 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCCSS-------C---SEESSEEEECHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHhhh-------h---cceeeeEEecHHHHH
Confidence 3789999999999877666555543 478999999773 3333333333221 1 011356677766654
Q ss_pred H
Q psy6275 152 N 152 (391)
Q Consensus 152 ~ 152 (391)
.
T Consensus 73 ~ 73 (1166)
T 3u4q_B 73 W 73 (1166)
T ss_dssp H
T ss_pred H
Confidence 3
No 247
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.36 E-value=1 Score=36.90 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=21.6
Q ss_pred cEEEEecCCcchHHHHHHHHHHHH-hcCCeEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTT 107 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l-~~~~~vlvl~ 107 (391)
-+.++|++|||||+..... +..+ ..+.++.++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L-~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKW-VAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHH-HHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHhhHhcCCeeeEEE
Confidence 4779999999999865333 3333 3455665554
No 248
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=85.35 E-value=0.54 Score=39.69 Aligned_cols=21 Identities=5% Similarity=0.368 Sum_probs=17.5
Q ss_pred hcCCcEEEEecCCcchHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~ 90 (391)
..++-++++||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 367889999999999998643
No 249
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=85.31 E-value=2.3 Score=42.64 Aligned_cols=71 Identities=14% Similarity=0.112 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCcEEEEEcchhhHHHHHHHhhccCCC-----ChHHHHHHHHHHHHHhhhcchhhccCcchHhHHHHHHh
Q psy6275 297 KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFN-----ETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRR 371 (391)
Q Consensus 297 ~l~~~l~~~~~~~~iIF~~t~~~~~~la~~L~~~g~~-----~~~~r~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 371 (391)
.+.+.+...+ +.++||++|....+.+++.|...+.. ...++..+.+.|++.-.+|.++.. -.+..
T Consensus 439 ~i~~l~~~~~-g~~lvlF~Sy~~l~~v~~~l~~~~~~~~q~~~~~~~~~ll~~f~~~~~vL~~v~~---------gsf~E 508 (620)
T 4a15_A 439 VIEDIILKVK-KNTIVYFPSYSLMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDHGTIFAVSG---------GRLSE 508 (620)
T ss_dssp HHHHHHHHHC-SCEEEEESCHHHHHHHTSSCCSCCEECCTTCCSHHHHHHHHHHTTSCCEEEEETT---------SCC--
T ss_pred HHHHHHHhCC-CCEEEEeCCHHHHHHHHHHHHhcchhccCCCChhHHHHHHHHhccCCcEEEEEec---------Cceec
Confidence 3444444444 47999999999999999988622111 123566777777633344444311 14678
Q ss_pred hhhhcc
Q psy6275 372 GIGIHH 377 (391)
Q Consensus 372 GI~~~h 377 (391)
|||+..
T Consensus 509 GiD~~g 514 (620)
T 4a15_A 509 GINFPG 514 (620)
T ss_dssp ------
T ss_pred cccCCC
Confidence 999976
No 250
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=85.08 E-value=0.57 Score=40.09 Aligned_cols=22 Identities=14% Similarity=0.338 Sum_probs=17.6
Q ss_pred HhcCCcEEEEecCCcchHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~ 90 (391)
+..|+-+.+.||+|+|||+..-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 4678889999999999998753
No 251
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=84.99 E-value=6.3 Score=31.53 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHH
Q psy6275 85 KTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNM 153 (391)
Q Consensus 85 KT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~ 153 (391)
|... +..++... .+.++||.++++.-+..++..+....-.+..++|+.+. ....+|+|+|.
T Consensus 17 K~~~-l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------ 88 (165)
T 1fuk_A 17 KYEC-LTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------ 88 (165)
T ss_dssp HHHH-HHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------
T ss_pred HHHH-HHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------
Confidence 6544 33344432 46789999999999999999998876678888887652 34568999984
Q ss_pred HhcCccccCccceEEEecc
Q psy6275 154 LYRGSEITREVGWVIFDEI 172 (391)
Q Consensus 154 l~~~~~~l~~~~~lViDE~ 172 (391)
.......+..++++|.-+.
T Consensus 89 ~~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 89 LLARGIDVQQVSLVINYDL 107 (165)
T ss_dssp GGTTTCCCCSCSEEEESSC
T ss_pred hhhcCCCcccCCEEEEeCC
Confidence 2233345667888776443
No 252
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=84.99 E-value=0.39 Score=38.86 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.6
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.|++|||||+..-..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999976443
No 253
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.81 E-value=0.96 Score=43.07 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=17.3
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||+.+-..+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3569999999999998754433
No 254
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=84.78 E-value=1 Score=40.38 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=17.5
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
..++++.||+|+|||..+-..
T Consensus 50 ~~~vll~G~~GtGKT~la~~l 70 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRL 70 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 578999999999999876433
No 255
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.76 E-value=0.62 Score=38.21 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=18.6
Q ss_pred hcCCcEEEEecCCcchHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~ 92 (391)
..++.+++.|++|||||+..-..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l 31 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKEL 31 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHH
Confidence 35678999999999999976443
No 256
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=84.56 E-value=0.45 Score=39.26 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.1
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+++.|++|||||+..-..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L 23 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLA 23 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 567899999999999875433
No 257
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=84.56 E-value=0.54 Score=42.63 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=24.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
..|+.+.++||+|+|||+..-+.+ ..+ .++++..+|
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~-gl~--~G~I~~~v~ 159 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLI-HFL--GGSVLSFAN 159 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHH-HHH--TCEEECGGG
T ss_pred cCCCEEEEECCCCCcHHHHHHHHh-hhc--CceEEEEec
Confidence 568889999999999998653322 222 567765444
No 258
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=84.53 E-value=0.39 Score=39.34 Aligned_cols=22 Identities=18% Similarity=0.258 Sum_probs=17.7
Q ss_pred hcCCcEEEEecCCcchHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~ 91 (391)
..|+-+.+.||+|||||+.+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3566789999999999987643
No 259
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=84.51 E-value=0.61 Score=38.60 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=17.9
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+..++++|++|||||++.-..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~L 30 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMI 30 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999975433
No 260
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=84.42 E-value=0.61 Score=40.05 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=17.7
Q ss_pred HHhcCCcEEEEecCCcchHHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~ 90 (391)
.+..|+-++++||+|+|||+..-
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHHH
Confidence 45678889999999999998753
No 261
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=84.31 E-value=1.1 Score=37.59 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=18.0
Q ss_pred hcCCcEEEEecCCcchHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~ 91 (391)
..+..+.+.||+|||||+..-.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 4577889999999999987643
No 262
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.08 E-value=0.76 Score=43.89 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=25.7
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
..++++|++|+|||+.....+......+.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 36889999999999876554444445577787775
No 263
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.05 E-value=0.65 Score=38.51 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=14.6
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
+-+.+.||+|+|||+..
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999874
No 264
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=84.05 E-value=0.45 Score=39.20 Aligned_cols=22 Identities=27% Similarity=0.234 Sum_probs=17.7
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+..+++.|++|||||+..-..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~L 24 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRL 24 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999976443
No 265
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=84.04 E-value=3.6 Score=33.93 Aligned_cols=81 Identities=14% Similarity=0.006 Sum_probs=49.3
Q ss_pred CcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcccC-----------CCCCEEEEcHHHH
Q psy6275 82 SAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTIN-----------PSSSCLIMTTEIL 150 (391)
Q Consensus 82 GsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~-----------~~~~I~v~Tp~~l 150 (391)
.+.|-.. +.-++.....+.++||.++++.-+..++..+....-.+..++|+.+.. ...+|+|+|.- +
T Consensus 29 ~~~K~~~-L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~-~ 106 (185)
T 2jgn_A 29 ESDKRSF-LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-A 106 (185)
T ss_dssp GGGHHHH-HHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---
T ss_pred cHHHHHH-HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcCh-h
Confidence 4566543 344444444578999999999999999999988766788888876532 24578888831 1
Q ss_pred HHHHhcCccccCccceEEE
Q psy6275 151 RNMLYRGSEITREVGWVIF 169 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lVi 169 (391)
.....+..++++|.
T Consensus 107 -----~~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 107 -----ARGLDISNVKHVIN 120 (185)
T ss_dssp ---------CCCSBSEEEE
T ss_pred -----hcCCCcccCCEEEE
Confidence 22234566777765
No 266
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=83.98 E-value=11 Score=29.96 Aligned_cols=81 Identities=15% Similarity=0.074 Sum_probs=55.7
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHH
Q psy6275 83 AGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILR 151 (391)
Q Consensus 83 sGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~ 151 (391)
..|-.. +.-++.. ..+.++||.++++..+..+...+....-.+..++|+... +...+|+|+|.
T Consensus 20 ~~K~~~-L~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~---- 93 (163)
T 2hjv_A 20 ENKFSL-LKDVLMT-ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD---- 93 (163)
T ss_dssp GGHHHH-HHHHHHH-HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG----
T ss_pred HHHHHH-HHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC----
Confidence 455443 3333333 356789999999999999999998876688888987652 34567999984
Q ss_pred HHHhcCccccCccceEEEec
Q psy6275 152 NMLYRGSEITREVGWVIFDE 171 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE 171 (391)
.......+..++++|.-+
T Consensus 94 --~~~~Gld~~~~~~Vi~~~ 111 (163)
T 2hjv_A 94 --VAARGIDIENISLVINYD 111 (163)
T ss_dssp --GGTTTCCCSCCSEEEESS
T ss_pred --hhhcCCchhcCCEEEEeC
Confidence 223344566788877644
No 267
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=83.98 E-value=0.49 Score=39.30 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=23.6
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L 112 (391)
+++.|++|||||..+...+.. +.+++|++.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~ 35 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQIL 35 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC-
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCC
Confidence 689999999999765543322 5578888775543
No 268
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=83.92 E-value=0.9 Score=38.67 Aligned_cols=40 Identities=20% Similarity=0.108 Sum_probs=26.1
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEccc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTPI 109 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P~ 109 (391)
..|+-+.+.||+|+|||+.....+..... .+..++++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 35677899999999999876444332222 14567776543
No 269
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=83.74 E-value=0.84 Score=44.48 Aligned_cols=39 Identities=5% Similarity=0.008 Sum_probs=30.6
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEcc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTTP 108 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~P 108 (391)
..|.-+++.|++|+|||...+..+.+...+ +.+++|+.-
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 346779999999999999877777676655 678888854
No 270
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=83.74 E-value=1.2 Score=38.77 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.6
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
.+.+++.||+|+|||..+-.
T Consensus 45 ~~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 45799999999999987543
No 271
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=83.73 E-value=1.2 Score=37.34 Aligned_cols=35 Identities=17% Similarity=0.103 Sum_probs=21.2
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+.-+.+.|++|||||+..-...-..-..++.+.++
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 34578999999999987533322211234555444
No 272
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=83.71 E-value=0.66 Score=42.08 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=15.9
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
-++++||||+|||..+...+
T Consensus 12 ~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHH
Confidence 47899999999998764443
No 273
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=83.57 E-value=0.7 Score=39.04 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=17.4
Q ss_pred HHhcCCcEEEEecCCcchHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~ 89 (391)
.+..|+-+.+.||+|+|||+..
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5678889999999999999875
No 274
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.52 E-value=0.72 Score=40.48 Aligned_cols=19 Identities=32% Similarity=0.219 Sum_probs=15.2
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.++++||||||||+.+...
T Consensus 3 li~I~G~~GSGKSTla~~L 21 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQI 21 (253)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 4789999999999875433
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.50 E-value=0.54 Score=39.28 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=14.6
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
+-++++||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999863
No 276
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.45 E-value=0.65 Score=41.92 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=17.4
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.++.+++.||+|+|||+.+-.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~a 68 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKA 68 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHH
Confidence 357799999999999987543
No 277
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=83.43 E-value=1.3 Score=36.28 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=17.1
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.|..+++.|+.|||||+..-.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~ 24 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMA 24 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 466788999999999987533
No 278
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=83.39 E-value=0.5 Score=39.97 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=16.7
Q ss_pred cEEEEecCCcchHHHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIAS 95 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~ 95 (391)
-.+++|++|||||..+..-+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999976444333
No 279
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=83.27 E-value=0.92 Score=41.29 Aligned_cols=97 Identities=8% Similarity=0.085 Sum_probs=51.0
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHH-Hh-----------cC----CeEEEEcccHHH-HHHHHHHHHHhcccceeeeCCc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASS-LK-----------QS----QRVIYTTPIKAL-SNQKYREFEEQFKDVGLITGDV 134 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~-l~-----------~~----~~vlvl~P~~~L-~~q~~~~~~~~~~~v~~~~g~~ 134 (391)
|..+++.||+|+|||...+..+... +. .+ .+++|+.-...+ ..++...++.+.-...-+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~--- 174 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVL--- 174 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHH---
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHh---
Confidence 4678999999999998776555542 21 23 688888654432 3444444433321110000
Q ss_pred ccCCCCCEEEE---cHHHHHHHHhcCc---cccCccceEEEecccccC
Q psy6275 135 TINPSSSCLIM---TTEILRNMLYRGS---EITREVGWVIFDEIHYMR 176 (391)
Q Consensus 135 ~~~~~~~I~v~---Tp~~l~~~l~~~~---~~l~~~~~lViDE~h~~~ 176 (391)
.++.+. +.+.+..++..-. .....+++||||.+..+.
T Consensus 175 -----~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~ 217 (322)
T 2i1q_A 175 -----DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTF 217 (322)
T ss_dssp -----HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHH
T ss_pred -----cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHH
Confidence 023332 2333222221111 112468999999998763
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=83.25 E-value=1 Score=40.65 Aligned_cols=91 Identities=11% Similarity=0.035 Sum_probs=48.1
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL 150 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l 150 (391)
+.++++|++|+|||+.....+......+.+++++. +.+..+.++...+.... .+.++.+... ..|..+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~-~v~v~~~~~~---------~~p~~~ 168 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQI-GVPVYGEPGE---------KDVVGI 168 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHH-TCCEECCTTC---------CCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccC-CeEEEecCCC---------CCHHHH
Confidence 35778999999999876544433335577777764 33433333322222211 2333322110 234443
Q ss_pred H-HHHhcCccccCccceEEEeccccc
Q psy6275 151 R-NMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 151 ~-~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
. ..+.... ...++++|+|=+-.+
T Consensus 169 ~~~~l~~~~--~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 169 AKRGVEKFL--SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHHHHHH--HTTCSEEEEECCCSC
T ss_pred HHHHHHHHH--hCCCCEEEEeCCCCc
Confidence 3 2222111 147899999998765
No 281
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=83.18 E-value=0.48 Score=38.68 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=16.6
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
+..+++.|++|||||+..-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 56789999999999987543
No 282
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=83.17 E-value=0.75 Score=38.60 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.6
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.+..+++.||+|||||+..-.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 567899999999999987543
No 283
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.14 E-value=1.1 Score=43.44 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=23.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
|.-+.+.|++|+|||+..-..+...-..++++++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 34578999999999987643332222456778776
No 284
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=83.11 E-value=1.4 Score=37.23 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=23.4
Q ss_pred CcHHHHHHHHHHhcCCcEEEEecCCcchHHHHHH
Q psy6275 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 58 ~~~~Q~~~i~~i~~~~~~li~apTGsGKT~~~~~ 91 (391)
.++.+... ..+..+..+++.|++|||||+..-.
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHHHH
Confidence 34555554 3346677899999999999987643
No 285
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.97 E-value=0.6 Score=39.70 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=22.1
Q ss_pred CCCCcHHHHHHHHHHhcC----CcEEEEecCCcchHHHH
Q psy6275 55 PFVLDPFQKEAILCIENN----QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 55 ~~~~~~~Q~~~i~~i~~~----~~~li~apTGsGKT~~~ 89 (391)
++++... ..++..+.++ +.+++.||+|+|||..+
T Consensus 38 ~~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 38 QIEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp TCCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred CcCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3444444 4444444333 35999999999999875
No 286
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=82.83 E-value=0.55 Score=38.34 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.1
Q ss_pred cEEEEecCCcchHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~ 91 (391)
.+++.|++|||||+.+-.
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 578999999999987543
No 287
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=82.82 E-value=0.52 Score=54.99 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=38.3
Q ss_pred cCCCCccCCCCCcHHHHHH----HHHHhcCCcEEEEecCCcchHHHHHHH--HHHHHhc-CCeEEEEccc
Q psy6275 47 KEKPAREYPFVLDPFQKEA----ILCIENNQSVLVSAHTSAGKTVVAEYA--IASSLKQ-SQRVIYTTPI 109 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~Q~~~----i~~i~~~~~~li~apTGsGKT~~~~~~--~~~~l~~-~~~vlvl~P~ 109 (391)
+.+.+.+.++.+++.+..= ...+..++.++++||||||||.++-.. ++..+.. ..++.++-|.
T Consensus 894 i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk 963 (2695)
T 4akg_A 894 LKDAGQRSGFSMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTK 963 (2695)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTT
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCC
Confidence 3444556677777765332 234456788999999999999987433 3333322 2344555553
No 288
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=82.71 E-value=1.3 Score=38.98 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=21.9
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
...++++|++|||||+.+-...-..-..+..++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 44689999999999997644332211234445444
No 289
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=82.62 E-value=0.89 Score=37.64 Aligned_cols=24 Identities=17% Similarity=0.291 Sum_probs=19.0
Q ss_pred HhcCCcEEEEecCCcchHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+..+++.|++|||||+..-..
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~L 29 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKI 29 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHH
Confidence 345678999999999999976443
No 290
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=82.62 E-value=2 Score=46.55 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=42.5
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhc------------CCeEEEEcccHHHHHHHHHHHHHhcc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQ------------SQRVIYTTPIKALSNQKYREFEEQFK 125 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~------------~~~vlvl~P~~~L~~q~~~~~~~~~~ 125 (391)
..+|.|+-|||||.+...-+++.+.. ..++|+++=|++-+.++..++.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 45999999999999987777777642 24899999999999999888877654
No 291
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=82.49 E-value=0.75 Score=37.13 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=15.5
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.|++|||||+..-..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L 21 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKL 21 (173)
T ss_dssp EEEEECSSSSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999876443
No 292
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=82.45 E-value=1 Score=37.38 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=19.0
Q ss_pred HhcCCcEEEEecCCcchHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+..+++.|++|||||+..-..
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L 32 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKL 32 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHH
Confidence 445678999999999999876443
No 293
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=82.36 E-value=13 Score=31.29 Aligned_cols=80 Identities=15% Similarity=0.113 Sum_probs=56.2
Q ss_pred CcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHH
Q psy6275 82 SAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEIL 150 (391)
Q Consensus 82 GsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l 150 (391)
...|..+. .-++.. ..+.++||.++++.-+..++..+....-.+..++|+.+. +...+|+|+|.
T Consensus 15 ~~~k~~~l-~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~--- 89 (212)
T 3eaq_A 15 VRGRLEVL-SDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD--- 89 (212)
T ss_dssp TTSHHHHH-HHHHHH-HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT---
T ss_pred HHHHHHHH-HHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC---
Confidence 34565443 222222 357899999999999999999998877688889998653 34578999994
Q ss_pred HHHHhcCccccCccceEEE
Q psy6275 151 RNMLYRGSEITREVGWVIF 169 (391)
Q Consensus 151 ~~~l~~~~~~l~~~~~lVi 169 (391)
+......+..++++|.
T Consensus 90 ---~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 90 ---VAARGLDIPQVDLVVH 105 (212)
T ss_dssp ---TTTCSSSCCCBSEEEE
T ss_pred ---hhhcCCCCccCcEEEE
Confidence 2334455677888774
No 294
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.21 E-value=1.1 Score=42.92 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=17.7
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++.||+|+|||+.+-..+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHH
T ss_pred CCceEeeCCCCCcHHHHHHHHH
Confidence 4789999999999998754433
No 295
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.83 E-value=1.8 Score=36.29 Aligned_cols=24 Identities=13% Similarity=0.245 Sum_probs=18.9
Q ss_pred hcCCcEEEEecCCcchHHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~ 93 (391)
..+..+++.|+.|||||+..-...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 356779999999999999864433
No 296
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=81.45 E-value=0.65 Score=38.42 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=16.9
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+++.|++|||||+..-..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L 25 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQAL 25 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456899999999999976433
No 297
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=81.35 E-value=1.8 Score=35.71 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=18.8
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEE
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVI 104 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vl 104 (391)
+++.|+.|||||+..-...-..-..+..++
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 689999999999986443322222344444
No 298
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=81.32 E-value=1.4 Score=42.05 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=49.5
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhc-CCeEEEEc--ccHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQ-SQRVIYTT--PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~-~~~vlvl~--P~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~ 149 (391)
+.++++|++|+|||++..-.+...... +.+++++. |.+..+.+....+.... .+.++.++.. .+|..
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~-~l~v~~~~~~---------~dp~~ 170 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQV-GVDFFPSDVG---------QKPVD 170 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHH-TCEECCCCSS---------SCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccC-CeeEEeCCCC---------CCHHH
Confidence 357788999999999875555444455 77888775 44444433332222221 2333322211 13544
Q ss_pred HH-HHHhcCccccCccceEEEeccccc
Q psy6275 150 LR-NMLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 150 l~-~~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+. ..+.... ...++++|+|=+-.+
T Consensus 171 i~~~~l~~~~--~~~~D~VIIDTpG~l 195 (433)
T 2xxa_A 171 IVNAALKEAK--LKFYDVLLVDTAGRL 195 (433)
T ss_dssp HHHHHHHHHH--HTTCSEEEEECCCCC
T ss_pred HHHHHHHHHH--hCCCCEEEEECCCcc
Confidence 42 2222111 136899999997654
No 299
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=81.31 E-value=3.2 Score=38.59 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=22.4
Q ss_pred EEEE-ecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 75 VLVS-AHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 75 ~li~-apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+.+. +.-|.|||++....+......+.+|+++-
T Consensus 146 Iav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4444 47789999987555444444578888875
No 300
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=81.31 E-value=3.7 Score=33.34 Aligned_cols=67 Identities=16% Similarity=0.164 Sum_probs=50.2
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
.+.++||.++++..+..++..+......+..++|+.+. +...+|+|+|. .......+..++++
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~~~V 106 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQVTIV 106 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccCCEE
Confidence 35799999999999999999998876678888888652 34568999984 22334456778888
Q ss_pred EEec
Q psy6275 168 IFDE 171 (391)
Q Consensus 168 ViDE 171 (391)
|.-+
T Consensus 107 i~~d 110 (175)
T 2rb4_A 107 VNFD 110 (175)
T ss_dssp EESS
T ss_pred EEeC
Confidence 7533
No 301
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=80.97 E-value=0.95 Score=41.33 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=16.6
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
+.++++||||||||......+
T Consensus 6 ~~i~i~GptGsGKTtla~~La 26 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALA 26 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 368999999999998764443
No 302
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=80.97 E-value=0.93 Score=36.64 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=17.3
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
+++++.|+.|||||++.-...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 689999999999999865443
No 303
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.72 E-value=0.98 Score=42.06 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=17.3
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
..++++.||+|+|||..+-..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~l 92 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTL 92 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH
Confidence 568999999999999876433
No 304
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=80.55 E-value=0.66 Score=38.33 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=16.4
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
+..+++.|++|||||+.+-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45689999999999997644
No 305
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=80.49 E-value=0.82 Score=38.20 Aligned_cols=21 Identities=14% Similarity=0.181 Sum_probs=17.5
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.+..+++.|+.|||||+..-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 467799999999999997543
No 306
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=80.42 E-value=1.7 Score=38.53 Aligned_cols=43 Identities=16% Similarity=0.086 Sum_probs=25.5
Q ss_pred cCCCCccCCCCCcHHHHHHHHHHhcC----C-cEEEEecCCcchHHHHH
Q psy6275 47 KEKPAREYPFVLDPFQKEAILCIENN----Q-SVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 47 ~~~~~~~~~~~~~~~Q~~~i~~i~~~----~-~~li~apTGsGKT~~~~ 90 (391)
+.+.++..|++|-.+-.. +..++++ + .+++.||+|+|||..+.
T Consensus 75 i~~~l~~qg~~~~~~~~~-l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 75 IYKILELNGYDPQYAASV-FLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHTTCCHHHHHHH-HHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHH-HHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 344455555553333222 3334433 2 49999999999998755
No 307
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.24 E-value=1 Score=41.39 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.0
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
..++|+||||||||..+...
T Consensus 8 ~lI~I~GptgSGKTtla~~L 27 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEV 27 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHH
Confidence 35889999999999876443
No 308
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=80.23 E-value=1.1 Score=41.41 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=23.6
Q ss_pred CCcHHHHHHHHH-------HhcCCc--EEEEecCCcchHHHHH
Q psy6275 57 VLDPFQKEAILC-------IENNQS--VLVSAHTSAGKTVVAE 90 (391)
Q Consensus 57 ~~~~~Q~~~i~~-------i~~~~~--~li~apTGsGKT~~~~ 90 (391)
.+..-|.+.+.. +.+|.| ++..|.||||||.+..
T Consensus 62 ~~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 62 EPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp CTTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 344556655543 356766 6789999999999863
No 309
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=80.17 E-value=1.4 Score=40.91 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.3
Q ss_pred HhcCCc--EEEEecCCcchHHHH
Q psy6275 69 IENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~--~li~apTGsGKT~~~ 89 (391)
+++|.| ++..|.||||||.+.
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HhCCCCEEEEEeCCCCCCccEEe
Confidence 466765 789999999999875
No 310
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.13 E-value=0.83 Score=53.97 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=39.7
Q ss_pred cccCCCCccCCCCCcHHHHH-HHH---HHhcCCcEEEEecCCcchHHHHHHHH--HHHHhc-CCeEEEEccc
Q psy6275 45 QSKEKPAREYPFVLDPFQKE-AIL---CIENNQSVLVSAHTSAGKTVVAEYAI--ASSLKQ-SQRVIYTTPI 109 (391)
Q Consensus 45 ~~~~~~~~~~~~~~~~~Q~~-~i~---~i~~~~~~li~apTGsGKT~~~~~~~--~~~l~~-~~~vlvl~P~ 109 (391)
..+.+.+.+.|+.+.+.+.. ++. .+..++.++++||||+|||.++-... +..+.. .....++-|.
T Consensus 875 ~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPK 946 (3245)
T 3vkg_A 875 KKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTT
T ss_pred HHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCC
Confidence 33445566678887776543 332 33456779999999999999974332 322211 2345556664
No 311
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=80.08 E-value=1.2 Score=41.22 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHHH-------hcCCc--EEEEecCCcchHHHHH
Q psy6275 57 VLDPFQKEAILCI-------ENNQS--VLVSAHTSAGKTVVAE 90 (391)
Q Consensus 57 ~~~~~Q~~~i~~i-------~~~~~--~li~apTGsGKT~~~~ 90 (391)
.+..-|.+.+..+ .+|.| ++..|.||||||.+..
T Consensus 61 ~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp CTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 3455566665432 56765 7889999999998853
No 312
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=79.92 E-value=1.6 Score=41.12 Aligned_cols=38 Identities=8% Similarity=0.109 Sum_probs=26.5
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHh------cCCeEEEEcc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLK------QSQRVIYTTP 108 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~------~~~~vlvl~P 108 (391)
.|.-+.+.||+|+|||......+..... .+.+++|+.-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 3567899999999999876544444332 2467888754
No 313
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=79.85 E-value=0.72 Score=41.38 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=15.7
Q ss_pred CcEEEEecCCcchHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~ 91 (391)
..++++||+|||||+.+-.
T Consensus 34 ~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp EEEEEECCTTSCTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4589999999999987543
No 314
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=79.78 E-value=1.3 Score=38.88 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=18.6
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.++.+++.|++|||||+..-..
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~L 68 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIM 68 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 3899999999999999986443
No 315
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.71 E-value=1.2 Score=42.85 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=16.8
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+++++.||+|+|||..+...
T Consensus 64 ~~iLl~GppGtGKT~la~al 83 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAI 83 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHH
Confidence 68999999999999876433
No 316
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=79.67 E-value=0.78 Score=39.45 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=13.7
Q ss_pred hcCCcEEEEecCCcchHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~ 90 (391)
..|+-+.+.||+|||||+..-
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp ECCCEEEEECSCC----CHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 467788999999999998753
No 317
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=79.54 E-value=12 Score=37.77 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=62.4
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc-----------cCCCCCEEEEcHHHHHH
Q psy6275 84 GKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT-----------INPSSSCLIMTTEILRN 152 (391)
Q Consensus 84 GKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~-----------~~~~~~I~v~Tp~~l~~ 152 (391)
|+-...+.-+...+..+.+++|.++++..+..+...+.+..-.+..++|+.. .....+|+|+|.
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~----- 503 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN----- 503 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----
Confidence 4433333334445557889999999999999999999887667777888753 124578999986
Q ss_pred HHhcCccccCccceEEEeccccc
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+......+.+++++|+-|++..
T Consensus 504 -~l~~GlDip~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 504 -LLREGLDIPEVSLVAILDADKE 525 (661)
T ss_dssp -CCSTTCCCTTEEEEEETTTTCC
T ss_pred -hhhCCcccCCCCEEEEeCcccc
Confidence 2234456778999999998865
No 318
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.48 E-value=2 Score=42.05 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=28.4
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEccc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPI 109 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~ 109 (391)
..|..+++.||+|+|||+.....+......+.+++++++.
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4567889999999999987654443333456678787754
No 319
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=79.38 E-value=6.1 Score=32.76 Aligned_cols=65 Identities=14% Similarity=-0.031 Sum_probs=48.9
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
.+.++||.++++.-+..+...+....-.+..++|+... +...+|+|+|.- + .....+..++++
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~-----~-~~Gldi~~v~~V 126 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDV-----A-SKGLDFPAIQHV 126 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHH-----H-HTTCCCCCCSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCc-----h-hcCCCcccCCEE
Confidence 35689999999999999999998876678888887653 235789999942 2 223456678887
Q ss_pred EE
Q psy6275 168 IF 169 (391)
Q Consensus 168 Vi 169 (391)
|.
T Consensus 127 I~ 128 (191)
T 2p6n_A 127 IN 128 (191)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 320
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=79.29 E-value=1.2 Score=41.85 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=15.8
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
-++|+||||+|||..+...+
T Consensus 4 ~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHH
Confidence 47899999999998754443
No 321
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=79.23 E-value=7.5 Score=31.43 Aligned_cols=82 Identities=12% Similarity=0.014 Sum_probs=56.2
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHH
Q psy6275 83 AGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILR 151 (391)
Q Consensus 83 sGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~ 151 (391)
..|... +..++... .+.++||.++++.-+..++..+....-.+..++|+... +...+|+|+|.
T Consensus 16 ~~K~~~-L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~---- 89 (172)
T 1t5i_A 16 NEKNRK-LFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN---- 89 (172)
T ss_dssp GGHHHH-HHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS----
T ss_pred HHHHHH-HHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC----
Confidence 455443 33333332 45789999999999999999998876678888887652 34578999984
Q ss_pred HHHhcCccccCccceEEEecc
Q psy6275 152 NMLYRGSEITREVGWVIFDEI 172 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lViDE~ 172 (391)
.......+..++++|.-+.
T Consensus 90 --~~~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 90 --LFGRGMDIERVNIAFNYDM 108 (172)
T ss_dssp --CCSTTCCGGGCSEEEESSC
T ss_pred --chhcCcchhhCCEEEEECC
Confidence 2233445667888876443
No 322
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=79.20 E-value=0.83 Score=37.77 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=15.8
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
..+++.||+|+|||+..-..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L 22 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRL 22 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45789999999999976433
No 323
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=79.15 E-value=16 Score=36.84 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=62.1
Q ss_pred chHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCcc-----------cCCCCCEEEEcHHHHHH
Q psy6275 84 GKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT-----------INPSSSCLIMTTEILRN 152 (391)
Q Consensus 84 GKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~-----------~~~~~~I~v~Tp~~l~~ 152 (391)
|+-...+..+......+.++||.++++..+..+...+.+..-.+..++|+.. .....+|+|+|.
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~----- 497 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN----- 497 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----
Confidence 4433333344445567889999999999999999999887667777888753 234678999985
Q ss_pred HHhcCccccCccceEEEeccccc
Q psy6275 153 MLYRGSEITREVGWVIFDEIHYM 175 (391)
Q Consensus 153 ~l~~~~~~l~~~~~lViDE~h~~ 175 (391)
+......+..++++|+=+++..
T Consensus 498 -~l~~GlDip~v~lVI~~d~d~~ 519 (664)
T 1c4o_A 498 -LLREGLDIPEVSLVAILDADKE 519 (664)
T ss_dssp -CCCTTCCCTTEEEEEETTTTSC
T ss_pred -hhhcCccCCCCCEEEEeCCccc
Confidence 2234455778999998888754
No 324
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=79.15 E-value=1.4 Score=37.90 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=18.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+..+++.|++|||||+..-...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 45679999999999999764443
No 325
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=79.14 E-value=1.6 Score=39.65 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.9
Q ss_pred cEEEEecCCcchHHHH
Q psy6275 74 SVLVSAHTSAGKTVVA 89 (391)
Q Consensus 74 ~~li~apTGsGKT~~~ 89 (391)
-+++.|+.|||||+..
T Consensus 6 v~~i~G~~GaGKTTll 21 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEEESSSSSCHHHH
T ss_pred EEEEEecCCCCHHHHH
Confidence 4789999999999874
No 326
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=79.12 E-value=1.1 Score=38.94 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.2
Q ss_pred CcEEEEecCCcchHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~ 90 (391)
+.+++.||+|+|||+.+-
T Consensus 50 ~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999998753
No 327
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=79.12 E-value=1.5 Score=37.27 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=17.6
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+..+++.|++|||||+..-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999976444
No 328
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=79.12 E-value=1 Score=37.98 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.6
Q ss_pred cCCcEEEEecCCcchHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~ 89 (391)
.+.-+.+.||+|||||+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556789999999999865
No 329
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=79.10 E-value=1.5 Score=35.68 Aligned_cols=19 Identities=16% Similarity=0.315 Sum_probs=15.9
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.|++|||||+..-..
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6899999999999976443
No 330
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=79.02 E-value=2.4 Score=34.78 Aligned_cols=17 Identities=24% Similarity=0.325 Sum_probs=14.3
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
.-+.++|++|+|||+..
T Consensus 7 ~~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL 23 (174)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 45789999999999864
No 331
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=79.01 E-value=2.8 Score=34.99 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=17.5
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+..+++.|++|||||+..-..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L 24 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLL 24 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHH
Confidence 4567899999999999976443
No 332
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=79.01 E-value=2.4 Score=41.27 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=20.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSL 97 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l 97 (391)
..+.++++.|+||||||.+.-..+...+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999987644444333
No 333
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=78.97 E-value=2.7 Score=35.18 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=17.9
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+..+++.|+.|||||+..-..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 4667999999999999976443
No 334
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=78.94 E-value=1.3 Score=37.95 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=17.1
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
....+++.|++|||||+..-..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHH
Confidence 3567999999999999975433
No 335
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=78.87 E-value=1.3 Score=37.36 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.7
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.||+|||||+..-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999986544
No 336
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=78.86 E-value=1.2 Score=38.27 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=18.2
Q ss_pred hcCCcEEEEecCCcchHHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~ 93 (391)
...+-+++.||+||||++.+...+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHH
Confidence 445668899999999998765443
No 337
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=78.58 E-value=1.7 Score=36.94 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=17.6
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
...+++.|++|||||+..-...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999764443
No 338
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=78.47 E-value=1.4 Score=36.15 Aligned_cols=20 Identities=10% Similarity=0.253 Sum_probs=16.3
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
..+++.|++|||||++.-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46899999999999976443
No 339
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=78.45 E-value=1.3 Score=36.61 Aligned_cols=16 Identities=19% Similarity=0.549 Sum_probs=14.0
Q ss_pred cEEEEecCCcchHHHH
Q psy6275 74 SVLVSAHTSAGKTVVA 89 (391)
Q Consensus 74 ~~li~apTGsGKT~~~ 89 (391)
.+.+.||+|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999875
No 340
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=78.39 E-value=1.3 Score=37.09 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=16.0
Q ss_pred CcEEEEecCCcchHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~ 91 (391)
..++++|++|||||+.+-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4799999999999987543
No 341
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.20 E-value=0.77 Score=40.39 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=17.0
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
.+.+++.||+|+|||..+-..
T Consensus 44 ~~~vll~G~~GtGKT~la~~l 64 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAV 64 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHH
Confidence 456999999999999876433
No 342
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=78.19 E-value=1.7 Score=39.76 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHH--------HhcCCc--EEEEecCCcchHHHHH
Q psy6275 57 VLDPFQKEAILC--------IENNQS--VLVSAHTSAGKTVVAE 90 (391)
Q Consensus 57 ~~~~~Q~~~i~~--------i~~~~~--~li~apTGsGKT~~~~ 90 (391)
.+..-|.+.+.. +.+|.| ++..|.||||||.+..
T Consensus 53 ~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 53 QSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 355567666543 356766 7889999999998853
No 343
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=78.14 E-value=2.6 Score=34.62 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.4
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.|++|||||+..-..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L 20 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKL 20 (195)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999876443
No 344
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=78.02 E-value=1.6 Score=37.04 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.0
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
.+++.||+||||++.+...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998765444
No 345
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=77.99 E-value=1.2 Score=37.64 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.6
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.||+|||||+..-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999976443
No 346
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=77.83 E-value=1.5 Score=38.07 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=18.1
Q ss_pred cCCcEEEEecCCcchHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+..+++.||+|||||+..-...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44579999999999998764443
No 347
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=77.72 E-value=1.3 Score=40.61 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=16.7
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
.++++.||+|+|||+.+-..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHII 71 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 67999999999999875443
No 348
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=77.45 E-value=1.3 Score=37.25 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=15.7
Q ss_pred cCCcEEEEecCCcchHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~ 89 (391)
.+.-+.+.||+|||||+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 4556789999999999875
No 349
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=77.45 E-value=1.5 Score=36.58 Aligned_cols=21 Identities=29% Similarity=0.221 Sum_probs=16.8
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+++.|++|||||+..-..
T Consensus 20 ~~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 346899999999999976443
No 350
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=77.43 E-value=2.5 Score=35.95 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=24.8
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHHHh-cCCeEEEE-ccc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYT-TPI 109 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~l~-~~~~vlvl-~P~ 109 (391)
+.|.-+++.|+.|+|||+..-... +.+. .+..++.+ -|.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~-~~l~~~~~~v~~~~~p~ 44 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLA-ERLRERGIEVQLTREPG 44 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHH-HHHHTTTCCEEEEESSC
T ss_pred CCceEEEEEcCCCCCHHHHHHHHH-HHHHHcCCCcccccCCC
Confidence 356778999999999999864443 3333 34455443 353
No 351
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=77.40 E-value=1.5 Score=35.46 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=16.3
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
+.+++.|++|||||+..-..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~L 22 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGREL 22 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999976443
No 352
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=77.32 E-value=1.9 Score=40.68 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=24.6
Q ss_pred CCcHHHHHHHH--------HHhcCCc--EEEEecCCcchHHHHH
Q psy6275 57 VLDPFQKEAIL--------CIENNQS--VLVSAHTSAGKTVVAE 90 (391)
Q Consensus 57 ~~~~~Q~~~i~--------~i~~~~~--~li~apTGsGKT~~~~ 90 (391)
.+..-|.+.+. .+.+|.| ++..|.||||||.+..
T Consensus 130 ~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 130 DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred ecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 45566776664 3356765 7889999999998853
No 353
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=77.27 E-value=1.9 Score=40.15 Aligned_cols=33 Identities=18% Similarity=0.087 Sum_probs=24.0
Q ss_pred CCcHHHHHHHHH--------HhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAILC--------IENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~~--------i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+.. +.+|.| ++..|.||||||.+.
T Consensus 77 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 77 DWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp CTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 455667666642 356765 778999999999875
No 354
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=77.18 E-value=1.9 Score=39.76 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=23.8
Q ss_pred CCcHHHHHHHH--------HHhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAIL--------CIENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~--------~i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+. .+.+|.| ++..|.||||||.+.
T Consensus 53 ~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 53 HGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp CTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 35556766654 3356765 788999999999875
No 355
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=77.17 E-value=1.5 Score=40.92 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=23.7
Q ss_pred CCcHHHHHHHHHH-------hcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAILCI-------ENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~~i-------~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+..+ .+|.| ++..|.||||||.+.
T Consensus 92 ~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 92 PPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp CTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred CCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 3555676666532 56765 788999999999875
No 356
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=77.07 E-value=1.9 Score=39.88 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.1
Q ss_pred HhcCCc--EEEEecCCcchHHHH
Q psy6275 69 IENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~--~li~apTGsGKT~~~ 89 (391)
+.+|.| ++..|.||||||.+.
T Consensus 99 ~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 99 ALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HhCCCceEEEEECCCCCCCceEe
Confidence 357766 678999999999875
No 357
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=77.05 E-value=1.5 Score=41.12 Aligned_cols=33 Identities=27% Similarity=0.192 Sum_probs=25.0
Q ss_pred CCcHHHHHHHHH--------HhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAILC--------IENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~~--------i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+.. +.+|.| ++..|.||||||.+.
T Consensus 74 ~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 74 GERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp CTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred cCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 456678877753 356766 778999999999875
No 358
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=77.02 E-value=2 Score=39.81 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=17.7
Q ss_pred HHhcCCc--EEEEecCCcchHHHH
Q psy6275 68 CIENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 68 ~i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+.+|.| ++..|.||||||.+.
T Consensus 87 ~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 87 NAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHhCCceeEEEeeCCCCCCCceEE
Confidence 3467776 688999999999885
No 359
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=77.00 E-value=1.6 Score=40.15 Aligned_cols=33 Identities=18% Similarity=0.111 Sum_probs=24.1
Q ss_pred CCcHHHHHHHHH--------HhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAILC--------IENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~~--------i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+.. +.+|.| ++..|.||||||.+.
T Consensus 70 ~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 70 PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 455667776643 356765 688999999999985
No 360
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=76.90 E-value=1.5 Score=37.32 Aligned_cols=21 Identities=14% Similarity=0.270 Sum_probs=16.7
Q ss_pred CCcEEEEecCCcchHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~ 92 (391)
+..+.+.||+|||||+..-..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 356889999999999976443
No 361
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=76.69 E-value=1 Score=41.24 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.2
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
...++++.||+|+|||..+-.
T Consensus 44 ~~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHHH
T ss_pred CCceEEEECCCCccHHHHHHH
Confidence 456799999999999987543
No 362
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=76.63 E-value=0.95 Score=37.03 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=13.1
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+..+++.|++|||||+.+-..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~L 25 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTL 25 (183)
T ss_dssp -CCEEEEECCC----CHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3567899999999999976443
No 363
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=76.62 E-value=1.9 Score=39.92 Aligned_cols=33 Identities=15% Similarity=0.086 Sum_probs=23.6
Q ss_pred CCcHHHHHHHH--------HHhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAIL--------CIENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~--------~i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+. .+.+|.| ++..|.||||||.+.
T Consensus 64 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 64 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred eccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 34556666554 3356766 788999999999875
No 364
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=76.58 E-value=1.9 Score=39.41 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=18.4
Q ss_pred HHHhcCCc--EEEEecCCcchHHHH
Q psy6275 67 LCIENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 67 ~~i~~~~~--~li~apTGsGKT~~~ 89 (391)
..+.+|.| ++..|.||||||.+.
T Consensus 74 ~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 74 TSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhCCCEEEEEeECCCCCCCcEEE
Confidence 34567776 778999999999875
No 365
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=76.55 E-value=1.4 Score=36.92 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=16.8
Q ss_pred hcCCcEEEEecCCcchHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~ 90 (391)
..+..+.+.|++|||||+..-
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 345668899999999998653
No 366
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=76.54 E-value=1.2 Score=37.51 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.7
Q ss_pred cEEEEecCCcchHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~ 91 (391)
-+++.|++|||||+..-.
T Consensus 2 ~I~i~G~~GsGKsTl~~~ 19 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEK 19 (214)
T ss_dssp EEEEEEEEEEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 368999999999987543
No 367
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=76.54 E-value=2 Score=39.71 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=24.0
Q ss_pred CCcHHHHHHHH--------HHhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAIL--------CIENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~--------~i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+. .+.+|.| ++..|.||||||.+.
T Consensus 65 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 45556766664 3356765 788999999999875
No 368
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.53 E-value=2.3 Score=41.04 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~ 93 (391)
...++++.||+|+|||..+-...
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la 222 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLA 222 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHH
Confidence 35689999999999998764433
No 369
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=76.52 E-value=2 Score=40.51 Aligned_cols=34 Identities=12% Similarity=0.094 Sum_probs=23.8
Q ss_pred CCcHHHHHHHH-------HHhcCCc--EEEEecCCcchHHHHH
Q psy6275 57 VLDPFQKEAIL-------CIENNQS--VLVSAHTSAGKTVVAE 90 (391)
Q Consensus 57 ~~~~~Q~~~i~-------~i~~~~~--~li~apTGsGKT~~~~ 90 (391)
.+..-|.+.+. .+.+|.| ++..|.||||||.+..
T Consensus 117 ~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 117 DQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 34455555543 3467776 6889999999999863
No 370
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=76.47 E-value=1.9 Score=39.87 Aligned_cols=33 Identities=24% Similarity=0.176 Sum_probs=24.0
Q ss_pred CCcHHHHHHHH--------HHhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAIL--------CIENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~--------~i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+. .+.+|.| ++..|.||||||.+.
T Consensus 56 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 56 DMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 35556776664 2356765 788999999999875
No 371
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=76.39 E-value=1.3 Score=38.45 Aligned_cols=21 Identities=19% Similarity=0.359 Sum_probs=17.7
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||+|||||+..
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 357888999999999999863
No 372
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=76.38 E-value=2 Score=39.93 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=24.2
Q ss_pred CCcHHHHHHHHH--------HhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAILC--------IENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~~--------i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+.. +.+|.| ++..|.||||||.+.
T Consensus 60 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 60 KPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 456667766643 356765 788999999999985
No 373
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=76.30 E-value=2 Score=39.62 Aligned_cols=33 Identities=21% Similarity=0.162 Sum_probs=23.9
Q ss_pred CCcHHHHHHHHH--------HhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAILC--------IENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~~--------i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+.. +.+|.| ++..|.||||||.+.
T Consensus 59 ~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 59 AEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred ecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 355567666643 356766 788999999999885
No 374
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=76.30 E-value=2 Score=39.82 Aligned_cols=33 Identities=30% Similarity=0.195 Sum_probs=23.9
Q ss_pred CCcHHHHHHHH--------HHhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAIL--------CIENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~--------~i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+. .+.+|.| ++..|.||||||.+.
T Consensus 81 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 81 DETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp CTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 45556776663 3356766 788999999999875
No 375
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=76.16 E-value=7.6 Score=36.10 Aligned_cols=74 Identities=14% Similarity=-0.006 Sum_probs=53.6
Q ss_pred HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCc
Q psy6275 90 EYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGS 158 (391)
Q Consensus 90 ~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~ 158 (391)
+..++.....+.++||.++++..+..+++.+.+..-.+..++|+... +...+|+|+|.- + ...
T Consensus 266 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~-----~-~~G 339 (417)
T 2i4i_A 266 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAV-----A-ARG 339 (417)
T ss_dssp HHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHH-----H-HTT
T ss_pred HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECCh-----h-hcC
Confidence 33344433457899999999999999999998876678888887663 235789999962 2 233
Q ss_pred cccCccceEEE
Q psy6275 159 EITREVGWVIF 169 (391)
Q Consensus 159 ~~l~~~~~lVi 169 (391)
..+.+++++|.
T Consensus 340 idip~v~~Vi~ 350 (417)
T 2i4i_A 340 LDISNVKHVIN 350 (417)
T ss_dssp SCCCCEEEEEE
T ss_pred CCcccCCEEEE
Confidence 45667888775
No 376
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=76.14 E-value=1.6 Score=35.83 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.1
Q ss_pred CcEEEEecCCcchHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~ 92 (391)
..+++.|++|||||+..-..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L 26 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANI 26 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35889999999999975443
No 377
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=75.89 E-value=2.1 Score=36.23 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=17.4
Q ss_pred CCcEEEEecCCcchHHHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~ 93 (391)
+..+++.|++|||||+..-...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999764443
No 378
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=75.83 E-value=1.6 Score=38.61 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.2
Q ss_pred CcEEEEecCCcchHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~ 90 (391)
+.+++.||+|+|||+.+-
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 458999999999998753
No 379
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=75.82 E-value=1.3 Score=35.69 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=15.5
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.|++|||||+..-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLL 20 (168)
T ss_dssp EEEEESCTTSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5789999999999876443
No 380
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=75.79 E-value=1.8 Score=35.38 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=14.2
Q ss_pred cEEEEecCCcchHHHH
Q psy6275 74 SVLVSAHTSAGKTVVA 89 (391)
Q Consensus 74 ~~li~apTGsGKT~~~ 89 (391)
-.+++||+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 6789999999999874
No 381
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=75.73 E-value=2.7 Score=37.99 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=15.4
Q ss_pred CCcEEEEecCCcchHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~ 90 (391)
+.-+.+.||+|||||+..-
T Consensus 80 g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CEEEEEEECTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4457799999999998753
No 382
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=75.65 E-value=2.1 Score=39.77 Aligned_cols=21 Identities=19% Similarity=0.249 Sum_probs=17.1
Q ss_pred HhcCCc--EEEEecCCcchHHHH
Q psy6275 69 IENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~--~li~apTGsGKT~~~ 89 (391)
+.+|.| ++..|.||||||.+.
T Consensus 85 ~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 85 AFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhcCCeeEEEEeCCCCCCCceEe
Confidence 457765 788999999999874
No 383
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=75.53 E-value=1.8 Score=34.44 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=14.0
Q ss_pred cEEEEecCCcchHHHH
Q psy6275 74 SVLVSAHTSAGKTVVA 89 (391)
Q Consensus 74 ~~li~apTGsGKT~~~ 89 (391)
-.++.||+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999874
No 384
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=75.48 E-value=1.9 Score=36.01 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=25.3
Q ss_pred cCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCC
Q psy6275 161 TREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205 (391)
Q Consensus 161 l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 205 (391)
..+.+++|+||+..+.... ...++.+...+.....+++-|.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~-~~~~~~l~~~l~~~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFS-QLFIQAVRQTLSTPGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTC-SHHHHHHHHHHHCSSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCcccccc-HHHHHHHHHHHhCCCcEEEEEeecC
Confidence 5678899999987663221 2234444444444444555466653
No 385
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=75.46 E-value=1.6 Score=38.71 Aligned_cols=18 Identities=33% Similarity=0.564 Sum_probs=15.2
Q ss_pred CcEEEEecCCcchHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~ 90 (391)
+.+++.||+|+|||+.+-
T Consensus 45 ~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp SEEEEESSTTSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 449999999999998753
No 386
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=75.43 E-value=1.9 Score=40.07 Aligned_cols=17 Identities=29% Similarity=0.388 Sum_probs=14.7
Q ss_pred cEEEEecCCcchHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~ 90 (391)
-.+++||+|+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 57799999999998763
No 387
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=75.26 E-value=2.9 Score=38.58 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=24.9
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
.+.++|++|+|||+.....+......+.+++++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 5889999999999876554444445577777764
No 388
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=75.18 E-value=2 Score=39.98 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=23.8
Q ss_pred CCcHHHHHHHH-------HHhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAIL-------CIENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~-------~i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+. .+.+|.| ++..|.||||||.+.
T Consensus 56 ~~~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 56 DGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp CTTCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred CCCCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEee
Confidence 35556666553 4467776 678999999999875
No 389
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=75.08 E-value=2.5 Score=41.08 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=25.2
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.++++|++|+|||+.....+......+.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 57899999999999865444444345777777764
No 390
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=75.07 E-value=2.2 Score=36.04 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.0
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
.+++.|++|||||+..-...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999998764443
No 391
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=74.96 E-value=3.4 Score=37.62 Aligned_cols=16 Identities=13% Similarity=0.314 Sum_probs=13.9
Q ss_pred cEEEEecCCcchHHHH
Q psy6275 74 SVLVSAHTSAGKTVVA 89 (391)
Q Consensus 74 ~~li~apTGsGKT~~~ 89 (391)
-+-+.||+|||||+..
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4779999999999875
No 392
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=74.89 E-value=2.6 Score=42.08 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.2
Q ss_pred HHhcCCcEEEEecCCcchHHHHHH
Q psy6275 68 CIENNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 68 ~i~~~~~~li~apTGsGKT~~~~~ 91 (391)
.+..++.+++.||+|+|||+.+-.
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ 79 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQA 79 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHHH
Confidence 457789999999999999987533
No 393
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=74.89 E-value=1.1 Score=38.98 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=17.9
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||+|||||+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 457888999999999999864
No 394
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=74.58 E-value=2.8 Score=36.94 Aligned_cols=53 Identities=11% Similarity=-0.009 Sum_probs=35.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~ 124 (391)
.|..+++.+++|+|||+..+..+...+.++-+++|+.- .+-..++...++.+.
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~-~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSI-SYPLQLIIRILSRFG 72 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEEC-SSCHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEE-eCCHHHHHHHHHHcC
Confidence 34567888788888886666667777788888888864 333344455555543
No 395
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=74.54 E-value=3.8 Score=40.38 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=27.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhc----CCeEEEEcccH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIK 110 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~----~~~vlvl~P~~ 110 (391)
...++++.|.||||||.+.-..+...+.. ..+++++=|..
T Consensus 213 k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp GSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred hCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 35789999999999998865555554432 24666666653
No 396
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=74.52 E-value=2.2 Score=39.88 Aligned_cols=34 Identities=15% Similarity=0.039 Sum_probs=24.8
Q ss_pred CCcHHHHHHHH--------HHhcCCc--EEEEecCCcchHHHHH
Q psy6275 57 VLDPFQKEAIL--------CIENNQS--VLVSAHTSAGKTVVAE 90 (391)
Q Consensus 57 ~~~~~Q~~~i~--------~i~~~~~--~li~apTGsGKT~~~~ 90 (391)
.+..-|.+.+. .+.+|.| ++..|.||||||.+..
T Consensus 110 ~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 110 DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred ecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 45566777664 2356765 7889999999998853
No 397
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=74.45 E-value=3 Score=45.76 Aligned_cols=42 Identities=14% Similarity=0.153 Sum_probs=25.8
Q ss_pred cCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcc
Q psy6275 161 TREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSA 202 (391)
Q Consensus 161 l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SA 202 (391)
+++-+++|+||+=.-+|......+...+..+..++-+|+.|-
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaH 611 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAH 611 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECS
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 456778999999877776555555555554444444555443
No 398
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=74.31 E-value=1.9 Score=37.60 Aligned_cols=22 Identities=18% Similarity=0.213 Sum_probs=17.7
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.+..+.+.||+|||||+..-..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~L 47 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKAL 47 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4667899999999999875433
No 399
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=74.29 E-value=2.9 Score=35.91 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=22.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+..+++.|+.|||||+..-... ..+..+..++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~-~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVY-HRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHH-HHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHH-HHHhcCCCceee
Confidence 56778999999999998754433 333324445433
No 400
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=74.29 E-value=3.1 Score=40.72 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=25.1
Q ss_pred hcCCcEEEEecCCcchHHHHHHHHHHH-HhcCCeEEEEc
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTT 107 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~~~~~-l~~~~~vlvl~ 107 (391)
..|+.+.+.||+|||||+.....++.. +..+...+++.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~ 75 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT 75 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 467889999999999998765543333 33243455553
No 401
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=74.21 E-value=1.9 Score=35.80 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=15.3
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+++.|++|||||+..-..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L 20 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEI 20 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 4789999999999875433
No 402
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=74.18 E-value=2.1 Score=39.84 Aligned_cols=33 Identities=21% Similarity=0.166 Sum_probs=23.7
Q ss_pred CCcHHHHHHHHH--------HhcCCc--EEEEecCCcchHHHH
Q psy6275 57 VLDPFQKEAILC--------IENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 57 ~~~~~Q~~~i~~--------i~~~~~--~li~apTGsGKT~~~ 89 (391)
.+..-|.+.+.. +.+|.| ++..|.||||||.+.
T Consensus 76 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 76 GPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 355567766643 356765 788999999999874
No 403
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.08 E-value=2.4 Score=40.08 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=18.8
Q ss_pred HHHHhcCCc--EEEEecCCcchHHHH
Q psy6275 66 ILCIENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 66 i~~i~~~~~--~li~apTGsGKT~~~ 89 (391)
+..+.+|.| ++..|.||||||.+.
T Consensus 131 v~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 131 IQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHCCCceEEEEecCCCCCCeeEe
Confidence 344567776 688999999999885
No 404
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=74.02 E-value=2 Score=37.17 Aligned_cols=21 Identities=14% Similarity=0.199 Sum_probs=17.1
Q ss_pred cCCcEEEEecCCcchHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~ 91 (391)
.+..+.+.||+|||||+..-.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356799999999999987543
No 405
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=74.01 E-value=3.2 Score=38.09 Aligned_cols=37 Identities=11% Similarity=0.056 Sum_probs=24.5
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
.+..+.+.||+|+|||+..-..+-.....++++.++.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~ 90 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 90 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEE
Confidence 4567889999999999875333322223466676664
No 406
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=74.00 E-value=1.4 Score=36.71 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.1
Q ss_pred CcEEEEecCCcchHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~ 90 (391)
..+++.|++|||||+..-
T Consensus 16 ~~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458899999999998753
No 407
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=73.99 E-value=2 Score=35.81 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=15.0
Q ss_pred cEEEEecCCcchHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~ 91 (391)
.+.+.|++|||||+..-.
T Consensus 3 ~i~i~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQM 20 (204)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 478999999999987543
No 408
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=73.93 E-value=1 Score=39.37 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=15.6
Q ss_pred CcEEEEecCCcchHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~ 91 (391)
..+++.|++|||||+.+-.
T Consensus 33 ~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEEESCGGGTTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4589999999999987543
No 409
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=73.90 E-value=4.6 Score=34.30 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=17.9
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
.|.-+++.|+.|||||+..-..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l 23 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVV 23 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4677899999999999886443
No 410
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=73.31 E-value=3.8 Score=37.24 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=26.0
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
-++..+..|.|||++....+......+.+|+++-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 4677888999999987666555556688888885
No 411
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=73.11 E-value=2.2 Score=40.80 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.5
Q ss_pred CCcEEEEecCCcchHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~ 90 (391)
.+++++.||+|+|||..+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4689999999999998753
No 412
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=73.10 E-value=2 Score=35.94 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.2
Q ss_pred cEEEEecCCcchHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~ 92 (391)
.+.+.||.|||||+..-..
T Consensus 4 ~i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEEECSTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4679999999999975433
No 413
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=73.03 E-value=4.3 Score=34.28 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=23.7
Q ss_pred EEEEe-cCCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 75 VLVSA-HTSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 75 ~li~a-pTGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
+.+.+ .+|.|||++..-.+......+.+|+++=|
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 33444 57999999876555554456889998765
No 414
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=72.91 E-value=4.9 Score=34.76 Aligned_cols=32 Identities=13% Similarity=0.255 Sum_probs=21.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCe
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR 102 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~ 102 (391)
.+.-+++.|+.|||||+..-...-..-..+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 57789999999999998764443322234444
No 415
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=72.79 E-value=1.9 Score=36.78 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.0
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|+|||+..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457888999999999999864
No 416
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=72.68 E-value=3.5 Score=35.49 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=16.0
Q ss_pred HhcCCcEEEEecCCcchHHHHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~~~~ 92 (391)
+..|.-+++.|+.|+|||+..-..
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l 45 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWF 45 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHH
Confidence 456788999999999999876443
No 417
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=72.63 E-value=1.9 Score=37.00 Aligned_cols=21 Identities=14% Similarity=0.344 Sum_probs=17.7
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|||||+..
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 456888899999999999864
No 418
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=72.55 E-value=2.7 Score=40.12 Aligned_cols=30 Identities=13% Similarity=0.088 Sum_probs=22.0
Q ss_pred HHHHHHHH--------HHhcCCc--EEEEecCCcchHHHH
Q psy6275 60 PFQKEAIL--------CIENNQS--VLVSAHTSAGKTVVA 89 (391)
Q Consensus 60 ~~Q~~~i~--------~i~~~~~--~li~apTGsGKT~~~ 89 (391)
.-|.+.+. .+.+|.| ++..|.||||||.+.
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 45666654 2356766 788999999999875
No 419
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=72.28 E-value=1.8 Score=38.53 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=18.0
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||+|||||+..
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457888999999999999864
No 420
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=72.12 E-value=3.9 Score=40.56 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=28.0
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
.+-++++|..|.|||++....+......+.+++++-
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 356788899999999988766666556788888874
No 421
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=71.68 E-value=1.7 Score=35.04 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=16.7
Q ss_pred hcCCcEEEEecCCcchHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~ 89 (391)
..|.-+.+.||.|+|||+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45677889999999999864
No 422
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=71.67 E-value=1.6 Score=37.00 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.0
Q ss_pred CCcEEEEecCCcchHHHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~ 91 (391)
+..+.+.|++|||||++.-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~ 23 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANA 23 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34688999999999997543
No 423
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=71.61 E-value=2 Score=37.57 Aligned_cols=21 Identities=14% Similarity=0.408 Sum_probs=18.1
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||+|||||+..
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457888999999999999864
No 424
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=71.53 E-value=2.4 Score=35.13 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.5
Q ss_pred CcEEEEecCCcchHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~ 91 (391)
..+.+.|++|||||++.-.
T Consensus 9 ~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578999999999997543
No 425
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=71.48 E-value=4 Score=37.22 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=26.3
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
.-+++.+..|.|||++....+......+.+++++-
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34667888999999987666655556788888873
No 426
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=71.38 E-value=2 Score=36.98 Aligned_cols=21 Identities=43% Similarity=0.501 Sum_probs=18.0
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|+|||+..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457888999999999999864
No 427
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=71.36 E-value=2.9 Score=35.66 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=15.9
Q ss_pred cEEEEecCCcchHHHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~ 93 (391)
.+++.|++|||||+..-...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999764443
No 428
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=71.23 E-value=1.2 Score=38.73 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=17.8
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||+|||||+..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 456788999999999999864
No 429
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=71.16 E-value=4 Score=35.39 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=23.7
Q ss_pred cEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
.+++.|..|+|||+.....+.... .+.+++++.
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 478899999999987654443333 667777775
No 430
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=71.00 E-value=2 Score=37.77 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.1
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||+|||||+..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 457888999999999999864
No 431
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=70.90 E-value=1.9 Score=43.06 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=14.7
Q ss_pred cEEEEecCCcchHHHH
Q psy6275 74 SVLVSAHTSAGKTVVA 89 (391)
Q Consensus 74 ~~li~apTGsGKT~~~ 89 (391)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999864
No 432
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=70.90 E-value=1.7 Score=35.68 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.6
Q ss_pred cEEEEecCCcchHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~ 91 (391)
.+.++|++|||||+....
T Consensus 4 ~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999987543
No 433
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=70.86 E-value=1.9 Score=40.18 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.8
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
.-.+++|+||+|||...
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45789999999999975
No 434
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=70.82 E-value=4.3 Score=37.18 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=23.9
Q ss_pred cCCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
.+..+.+.|++|+|||+..-..+......+.++.++.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3456889999999999875433322223456666554
No 435
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=70.73 E-value=4.7 Score=34.61 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=24.3
Q ss_pred cEEEEec-CCcchHHHHHHHHHHHHhcCCeEEEEcc
Q psy6275 74 SVLVSAH-TSAGKTVVAEYAIASSLKQSQRVIYTTP 108 (391)
Q Consensus 74 ~~li~ap-TGsGKT~~~~~~~~~~l~~~~~vlvl~P 108 (391)
.++|.|. ||+|||++....+.....++.++.+.=|
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 3555554 8999999876555555567778888755
No 436
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=70.68 E-value=2.1 Score=37.87 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=18.0
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||+|||||+..
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 457888999999999999864
No 437
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=70.63 E-value=3 Score=43.52 Aligned_cols=21 Identities=33% Similarity=0.281 Sum_probs=16.7
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
.++++.||||+|||..+-...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999998764433
No 438
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=70.49 E-value=4.6 Score=37.18 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=23.8
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
..+.+.|++|+|||+.+-..+-.....+.++.|+.
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 35789999999999876443333334466666665
No 439
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.48 E-value=2.1 Score=37.09 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=17.9
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|+|||+..
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457888999999999999864
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=70.41 E-value=2.1 Score=37.54 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=18.1
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|||||+..
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EeCCCEEEEECCCCCCHHHHH
Confidence 467888999999999999864
No 441
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=70.21 E-value=1.3 Score=40.10 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.9
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+.+.++||+|||||+..
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHH
Confidence 356888999999999999864
No 442
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=70.14 E-value=1.6 Score=38.55 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=17.9
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|+|||+..
T Consensus 47 i~~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHHH
Confidence 457888999999999999864
No 443
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=70.14 E-value=1.6 Score=38.73 Aligned_cols=21 Identities=19% Similarity=0.291 Sum_probs=17.9
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|||||+..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 457888999999999999864
No 444
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=70.06 E-value=2.2 Score=37.60 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=17.8
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|||||+..
T Consensus 29 i~~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 356888899999999999864
No 445
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=70.04 E-value=2.1 Score=37.91 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=18.1
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||+|+|||+..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457888999999999999864
No 446
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=69.96 E-value=4.6 Score=37.16 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=25.2
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
++..+..|.|||++....+......+.+|+++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 567788899999987665555556688888885
No 447
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=69.84 E-value=1.6 Score=38.52 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=17.9
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|||||+..
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 457888899999999999864
No 448
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.76 E-value=3.8 Score=42.08 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=18.3
Q ss_pred cCCcEEEEecCCcchHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~ 93 (391)
...++++.||+|+|||..+-...
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la 222 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLA 222 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHH
Confidence 35689999999999998764433
No 449
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=69.50 E-value=9.3 Score=33.64 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=30.0
Q ss_pred CcHHHHHHHHHHh----------cCCcEEEEec-CCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 58 LDPFQKEAILCIE----------NNQSVLVSAH-TSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 58 ~~~~Q~~~i~~i~----------~~~~~li~ap-TGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
|...-.+++..+. ..+.+++.++ .|.|||++..-.+......+.+|+++
T Consensus 58 ~~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 58 PKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp TTSHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 4455566665441 1234556554 68999998755544444567888887
No 450
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=69.40 E-value=8.9 Score=41.38 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=59.8
Q ss_pred HHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcc--cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCc
Q psy6275 92 AIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGS 158 (391)
Q Consensus 92 ~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~--~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~ 158 (391)
.++..+.++.+++|++|+++-+..+++.+++... .+..+||+... +.+.+|+|+|. +....
T Consensus 804 ~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~------v~e~G 877 (1151)
T 2eyq_A 804 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETG 877 (1151)
T ss_dssp HHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGG
T ss_pred HHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC------cceee
Confidence 3445556789999999999999999999998864 67788888652 34678999996 33445
Q ss_pred cccCccceEEEecccc
Q psy6275 159 EITREVGWVIFDEIHY 174 (391)
Q Consensus 159 ~~l~~~~~lViDE~h~ 174 (391)
.++.+++++|+..++.
T Consensus 878 iDip~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 878 IDIPTANTIIIERADH 893 (1151)
T ss_dssp SCCTTEEEEEETTTTS
T ss_pred ecccCCcEEEEeCCCC
Confidence 5678899999887764
No 451
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=69.18 E-value=6 Score=35.45 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=23.5
Q ss_pred CcEEEEec-CCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 73 QSVLVSAH-TSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 73 ~~~li~ap-TGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+-+++.++ .|.|||++....+......+.+|+++
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 44556665 68999998755544444568888887
No 452
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=69.16 E-value=25 Score=31.44 Aligned_cols=79 Identities=15% Similarity=0.118 Sum_probs=56.1
Q ss_pred cchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHH
Q psy6275 83 AGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILR 151 (391)
Q Consensus 83 sGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~ 151 (391)
..|-.+. .-++.. ..+.++||.++++.-+..++..+....-.+..++|+... ....+|+|+|.
T Consensus 13 ~~K~~~L-~~ll~~-~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~---- 86 (300)
T 3i32_A 13 RGRLEVL-SDLLYV-ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD---- 86 (300)
T ss_dssp SSHHHHH-HHHHHH-HCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS----
T ss_pred HHHHHHH-HHHHHh-cCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec----
Confidence 5565443 223332 247899999999999999999988776678889998653 23578999995
Q ss_pred HHHhcCccccCccceEEE
Q psy6275 152 NMLYRGSEITREVGWVIF 169 (391)
Q Consensus 152 ~~l~~~~~~l~~~~~lVi 169 (391)
+......+..+++||.
T Consensus 87 --va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 87 --VAARGLDIPQVDLVVH 102 (300)
T ss_dssp --TTTCSTTCCCCSEEEE
T ss_pred --hhhcCccccceeEEEE
Confidence 3344556778888875
No 453
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=69.02 E-value=2.4 Score=37.24 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=17.9
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|+|||+..
T Consensus 38 i~~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHH
T ss_pred EcCCcEEEEECCCCCCHHHHH
Confidence 457888999999999999864
No 454
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=68.82 E-value=2.5 Score=36.66 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=17.0
Q ss_pred hcCCcEEEEecCCcchHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~ 90 (391)
..+.-+-+.||.|||||+..-
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 455667899999999998753
No 455
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=68.74 E-value=2.5 Score=37.00 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=17.8
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|+|||+..
T Consensus 23 i~~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 356788899999999999864
No 456
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=68.57 E-value=3.2 Score=36.25 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=18.1
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|+|||+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl 46 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLG 46 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 457888999999999999875
No 457
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=68.48 E-value=3.6 Score=38.14 Aligned_cols=34 Identities=15% Similarity=-0.062 Sum_probs=23.4
Q ss_pred CCcHHHHHHHHH--------Hh-cCCc--EEEEecCCcchHHHHH
Q psy6275 57 VLDPFQKEAILC--------IE-NNQS--VLVSAHTSAGKTVVAE 90 (391)
Q Consensus 57 ~~~~~Q~~~i~~--------i~-~~~~--~li~apTGsGKT~~~~ 90 (391)
.+..-|.+.+.. +. .|.| ++..|.||||||.+..
T Consensus 59 ~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 59 DDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred cCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 455566665542 23 4666 6899999999998753
No 458
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=68.37 E-value=3.1 Score=36.78 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=13.8
Q ss_pred cEEEEecCCcchHHHH
Q psy6275 74 SVLVSAHTSAGKTVVA 89 (391)
Q Consensus 74 ~~li~apTGsGKT~~~ 89 (391)
++.+.||+|+|||+..
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999864
No 459
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=68.26 E-value=15 Score=33.89 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=52.3
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
.+.+++|.++++.-+..++..+......+..++|+... ....+|+|+|. .......+.++++|
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~~V 338 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQVSVV 338 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCCCEE
Confidence 46799999999999999999999887788889998652 34578999995 33444567788888
Q ss_pred EEec
Q psy6275 168 IFDE 171 (391)
Q Consensus 168 ViDE 171 (391)
|.-.
T Consensus 339 i~~~ 342 (412)
T 3fht_A 339 INFD 342 (412)
T ss_dssp EESS
T ss_pred EEEC
Confidence 8533
No 460
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=68.24 E-value=3.1 Score=34.27 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=18.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~ 93 (391)
.|+-+++.|+.|+|||..++..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 46679999999999998755444
No 461
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=68.22 E-value=2.5 Score=37.03 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=17.9
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|+|||+..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 457888899999999999864
No 462
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=67.74 E-value=16 Score=33.30 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=54.5
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
.+.+++|.++++.-+..++..++.....+..++|+... +...+|+|+|. .......+.++++|
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~~~V 315 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPTVSMV 315 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTTEEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCcccCCEE
Confidence 35799999999999999999999887788889998652 34578999996 33445567789998
Q ss_pred EEecccc
Q psy6275 168 IFDEIHY 174 (391)
Q Consensus 168 ViDE~h~ 174 (391)
|.-+...
T Consensus 316 i~~~~p~ 322 (395)
T 3pey_A 316 VNYDLPT 322 (395)
T ss_dssp EESSCCB
T ss_pred EEcCCCC
Confidence 8765543
No 463
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.70 E-value=3.2 Score=34.67 Aligned_cols=40 Identities=13% Similarity=0.169 Sum_probs=25.3
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYR 118 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P~~~L~~q~~~ 118 (391)
..+.++|++|||||++.-...-.. + +.+..+-.++.+.+.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~l---g---~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKY---G---AHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---C---CEEEEHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---C---CEEEECcHHHHHHHH
Confidence 347799999999999864443221 3 233456666666554
No 464
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=67.66 E-value=2.6 Score=37.51 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.0
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||.|+|||+..
T Consensus 44 i~~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred EcCCCEEEEECCCCCcHHHHH
Confidence 457888999999999999864
No 465
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=67.56 E-value=2 Score=38.48 Aligned_cols=20 Identities=40% Similarity=0.459 Sum_probs=17.2
Q ss_pred hcCCcEEEEecCCcchHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~ 89 (391)
..|+-+.+.||.|+|||+..
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 46778899999999999864
No 466
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=67.11 E-value=3.5 Score=34.66 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.5
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
.-.++.||+|+|||...
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 45789999999999875
No 467
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=67.09 E-value=2.7 Score=41.78 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=18.1
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+.+.+.||+|||||+..
T Consensus 366 i~~G~~~~ivG~sGsGKSTll 386 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIA 386 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHH
Confidence 357888999999999999864
No 468
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=67.09 E-value=33 Score=33.32 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=52.4
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHhcc---cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCc
Q psy6275 98 KQSQRVIYTTPIKALSNQKYREFEEQFK---DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITRE 163 (391)
Q Consensus 98 ~~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~ 163 (391)
..+.++||.++++.-+..++..+..... .+..++|+... ....+|+|+|. .......+.+
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~GiDip~ 410 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPN 410 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTT
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc------hhhcCCCccc
Confidence 3477999999999999999999988743 66778887653 23578999996 3344556778
Q ss_pred cceEEEeccc
Q psy6275 164 VGWVIFDEIH 173 (391)
Q Consensus 164 ~~~lViDE~h 173 (391)
+++||.-..-
T Consensus 411 v~~VI~~~~p 420 (563)
T 3i5x_A 411 VHEVLQIGVP 420 (563)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEECCC
Confidence 8888865543
No 469
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=66.86 E-value=2.5 Score=37.78 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.2
Q ss_pred cEEEEecCCcchHHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAEY 91 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~ 91 (391)
.+++.|++|||||+.+-.
T Consensus 4 ~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999997643
No 470
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=66.72 E-value=4.5 Score=34.63 Aligned_cols=32 Identities=22% Similarity=0.216 Sum_probs=24.1
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+.+++..|.|||++....+......+.+|+++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 45588899999998766555555567888887
No 471
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=66.35 E-value=2.5 Score=49.43 Aligned_cols=21 Identities=14% Similarity=0.515 Sum_probs=18.5
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..+++++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 456899999999999999875
No 472
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=65.86 E-value=3 Score=40.05 Aligned_cols=20 Identities=20% Similarity=0.333 Sum_probs=17.8
Q ss_pred hcCCcEEEEecCCcchHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~ 89 (391)
..|..+.+.||+|||||+..
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLl 155 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLS 155 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 57888999999999999875
No 473
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=65.67 E-value=3.2 Score=37.60 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=15.1
Q ss_pred CCcEEEEecCCcchHHHH
Q psy6275 72 NQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~ 89 (391)
|.-+.+.||+|||||+.+
T Consensus 90 g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CEEEEEECCCCchHHHHH
Confidence 455789999999999875
No 474
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=65.59 E-value=5.9 Score=36.20 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=26.8
Q ss_pred CcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+-+++.+.-|.|||++....+......+.+|+++-
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678888999999987666655556778888875
No 475
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=65.58 E-value=3.8 Score=38.25 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=17.4
Q ss_pred hcCCcEEEEecCCcchHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~ 90 (391)
..++.+++.||+|+|||+..-
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 356789999999999998653
No 476
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=65.52 E-value=6.8 Score=33.95 Aligned_cols=32 Identities=16% Similarity=0.160 Sum_probs=22.7
Q ss_pred EEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 76 LVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 76 li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+..+..|+|||++....+......+.+|+++-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45677889999987555544445678888874
No 477
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=65.47 E-value=3 Score=38.66 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=17.7
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||+|||||+..
T Consensus 27 i~~Ge~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLL 47 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHH
T ss_pred EcCCCEEEEECCCCchHHHHH
Confidence 356788899999999999864
No 478
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=65.04 E-value=3.6 Score=36.83 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=13.8
Q ss_pred cEEEEecCCcchHHHH
Q psy6275 74 SVLVSAHTSAGKTVVA 89 (391)
Q Consensus 74 ~~li~apTGsGKT~~~ 89 (391)
-+.++||+|||||+.+
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4679999999999875
No 479
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=65.00 E-value=2.9 Score=36.40 Aligned_cols=17 Identities=35% Similarity=0.397 Sum_probs=14.7
Q ss_pred cEEEEecCCcchHHHHH
Q psy6275 74 SVLVSAHTSAGKTVVAE 90 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~ 90 (391)
.+.+.|++|||||+..-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999998754
No 480
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=64.93 E-value=3 Score=37.10 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=16.6
Q ss_pred CcEEEEecCCcchHHHHHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~~~~~ 93 (391)
..+.+.|++|||||++.-...
T Consensus 76 ~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358899999999999864443
No 481
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=64.84 E-value=6 Score=33.61 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=22.0
Q ss_pred EEEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 76 LVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 76 li~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
+..+..|.|||++....+...-..+.+++++-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34456789999987555544445677888874
No 482
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=64.79 E-value=5 Score=34.63 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=16.9
Q ss_pred cCCcEEEEecCCcchHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~ 92 (391)
....+.+.||+|||||+..-..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3456899999999999876443
No 483
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=64.71 E-value=2.8 Score=35.93 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.8
Q ss_pred cCCcEEEEecCCcchHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~ 89 (391)
.|.-+.+.|+.|||||+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCEEEEEECSTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 4556889999999999864
No 484
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=64.56 E-value=4.3 Score=34.81 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=18.1
Q ss_pred hcCCcEEEEecCCcchHHHHHHH
Q psy6275 70 ENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 70 ~~~~~~li~apTGsGKT~~~~~~ 92 (391)
..+..+.+.|++|||||+..-..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l 36 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKII 36 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHH
Confidence 34567899999999999976443
No 485
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=64.39 E-value=6.8 Score=36.09 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=25.7
Q ss_pred cEEEEecCCcchHHHHHHHHHHHH--hcCCeEEEEc
Q psy6275 74 SVLVSAHTSAGKTVVAEYAIASSL--KQSQRVIYTT 107 (391)
Q Consensus 74 ~~li~apTGsGKT~~~~~~~~~~l--~~~~~vlvl~ 107 (391)
-++.+|..|.|||++........- ..+.+|+++-
T Consensus 20 i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 20 WIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 466778889999998766655555 5688888874
No 486
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=64.11 E-value=3.2 Score=38.90 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.3
Q ss_pred HhcCCcEEEEecCCcchHHHH
Q psy6275 69 IENNQSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 69 i~~~~~~li~apTGsGKT~~~ 89 (391)
+..|+-+.+.||+|||||+..
T Consensus 44 i~~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHH
T ss_pred EcCCCEEEEECCCCChHHHHH
Confidence 457888999999999999875
No 487
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=64.03 E-value=6.3 Score=35.55 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=23.8
Q ss_pred cHHHHHHHHH-HhcCCcEEEEecCCcchHHHHHHH
Q psy6275 59 DPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYA 92 (391)
Q Consensus 59 ~~~Q~~~i~~-i~~~~~~li~apTGsGKT~~~~~~ 92 (391)
+.-+.+.+.. +..++.+++.||.|+|||......
T Consensus 17 R~~el~~L~~~l~~~~~v~i~G~~G~GKT~Ll~~~ 51 (350)
T 2qen_A 17 REEESRKLEESLENYPLTLLLGIRRVGKSSLLRAF 51 (350)
T ss_dssp CHHHHHHHHHHHHHCSEEEEECCTTSSHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCeEEEECCCcCCHHHHHHHH
Confidence 4445555543 445688999999999999875443
No 488
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=64.00 E-value=24 Score=34.97 Aligned_cols=65 Identities=14% Similarity=0.048 Sum_probs=51.0
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCccceE
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREVGWV 167 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~l 167 (391)
.+.++||.++++.-+.+++..+....-.+..++|+... ....+|+|+|. .......+.++++|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a~~~GID~p~V~~V 339 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------AFGMGIDKPDVRFV 339 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------TSCTTCCCSCEEEE
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhcCCCcccccEE
Confidence 46899999999999999999999877688889998753 34578999995 22334556788888
Q ss_pred EE
Q psy6275 168 IF 169 (391)
Q Consensus 168 Vi 169 (391)
|.
T Consensus 340 I~ 341 (591)
T 2v1x_A 340 IH 341 (591)
T ss_dssp EE
T ss_pred EE
Confidence 84
No 489
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=63.71 E-value=14 Score=35.08 Aligned_cols=63 Identities=11% Similarity=0.060 Sum_probs=47.9
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcccceeeeCCccc-------CCCCCEEEEcHHHHHHHHhcCccccCccceEE
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI-------NPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g~~~~-------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~~~lV 168 (391)
.+.+++|++|+++-+..+++.++.....+..++|+... +...+|+|+|. +......+. +++||
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~VI 245 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATD------IAEMGANLC-VERVL 245 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESS------STTCCTTCC-CSEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECC------hhheeeccC-ceEEE
Confidence 46799999999999999999999886688888885432 23568999996 334445566 88876
No 490
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=63.52 E-value=43 Score=32.75 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=52.5
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhcc---cceeeeCCccc-----------CCCCCEEEEcHHHHHHHHhcCccccCcc
Q psy6275 99 QSQRVIYTTPIKALSNQKYREFEEQFK---DVGLITGDVTI-----------NPSSSCLIMTTEILRNMLYRGSEITREV 164 (391)
Q Consensus 99 ~~~~vlvl~P~~~L~~q~~~~~~~~~~---~v~~~~g~~~~-----------~~~~~I~v~Tp~~l~~~l~~~~~~l~~~ 164 (391)
.+.+++|.++++.-+..++..+..... .+..++|+... ....+|+|+|. .......+.++
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------~~~~GiDip~v 360 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------VGARGMDFPNV 360 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------GGTSSCCCTTC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------hhhcCCCcccC
Confidence 467999999999999999999988743 66778887653 23578999996 33345567789
Q ss_pred ceEEEeccc
Q psy6275 165 GWVIFDEIH 173 (391)
Q Consensus 165 ~~lViDE~h 173 (391)
++||.-..-
T Consensus 361 ~~VI~~~~p 369 (579)
T 3sqw_A 361 HEVLQIGVP 369 (579)
T ss_dssp CEEEEESCC
T ss_pred CEEEEcCCC
Confidence 998876654
No 491
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=63.33 E-value=28 Score=32.47 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=55.7
Q ss_pred CCcchHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhcccceeeeC--------Cccc-----------CCC
Q psy6275 81 TSAGKTVVAEYAIASSL--KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITG--------DVTI-----------NPS 139 (391)
Q Consensus 81 TGsGKT~~~~~~~~~~l--~~~~~vlvl~P~~~L~~q~~~~~~~~~~~v~~~~g--------~~~~-----------~~~ 139 (391)
..++|.....-.+.... ..+.++||.++++..+..+.+.+....-.+..++| +... ...
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 44566555443333333 45789999999999999999999888557777888 4332 124
Q ss_pred CCEEEEcHHHHHHHHhcCccccCccceEEEecc
Q psy6275 140 SSCLIMTTEILRNMLYRGSEITREVGWVIFDEI 172 (391)
Q Consensus 140 ~~I~v~Tp~~l~~~l~~~~~~l~~~~~lViDE~ 172 (391)
.+|+|+|. .......+..+++||+-+.
T Consensus 420 ~~vLv~T~------~~~~Gldl~~~~~Vi~~d~ 446 (494)
T 1wp9_A 420 FNVLVATS------VGEEGLDVPEVDLVVFYEP 446 (494)
T ss_dssp CSEEEECG------GGGGGGGSTTCCEEEESSC
T ss_pred ceEEEECC------ccccCCCchhCCEEEEeCC
Confidence 67888884 2233345667777775443
No 492
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=63.27 E-value=5.6 Score=32.87 Aligned_cols=109 Identities=10% Similarity=0.070 Sum_probs=56.5
Q ss_pred EecCCcchHHHHHHHHHHHHhcCCeEEEEcc--cHHHHHHHHHHHHHhcccceeeeCCcccCCCCCEEEEcHHHHHHHHh
Q psy6275 78 SAHTSAGKTVVAEYAIASSLKQSQRVIYTTP--IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLY 155 (391)
Q Consensus 78 ~apTGsGKT~~~~~~~~~~l~~~~~vlvl~P--~~~L~~q~~~~~~~~~~~v~~~~g~~~~~~~~~I~v~Tp~~l~~~l~ 155 (391)
.+..|+|||+.....+...-..+.+++++-- ...+.. +... .....+++-+.++.+...+.
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~--------~~~~---------~~~~~~~~~~~~~~l~~~l~ 70 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN--------WSKA---------GKAAFDVFTAASEKDVYGIR 70 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH--------HHTT---------SCCSSEEEECCSHHHHHTHH
T ss_pred eCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH--------HHhc---------CCCCCcEEecCcHHHHHHHH
Confidence 3567899999876555444456788888843 222211 1110 01123444444455555554
Q ss_pred cCccccCccceEEEecccccCccccchhHHHHHHHhCCCCcEEEEcccCCChHHHHHHh
Q psy6275 156 RGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWV 214 (391)
Q Consensus 156 ~~~~~l~~~~~lViDE~h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~l 214 (391)
.- -..++++|+|=.-.+ +.....++... +.-++.+.++... ......+
T Consensus 71 ~l---~~~yD~viiD~~~~~-----~~~~~~~l~~a--d~viiv~~~~~~~-~~~~~~~ 118 (206)
T 4dzz_A 71 KD---LADYDFAIVDGAGSL-----SVITSAAVMVS--DLVIIPVTPSPLD-FSAAGSV 118 (206)
T ss_dssp HH---TTTSSEEEEECCSSS-----SHHHHHHHHHC--SEEEEEECSCTTT-HHHHHHH
T ss_pred Hh---cCCCCEEEEECCCCC-----CHHHHHHHHHC--CEEEEEecCCHHH-HHHHHHH
Confidence 32 236899999976533 33333333332 3345555666555 4444433
No 493
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=63.24 E-value=8.3 Score=33.52 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=22.7
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+.+++.-|.|||++....+......+.+|+++
T Consensus 4 I~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 44578889999998755544444567788886
No 494
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=63.13 E-value=3.2 Score=38.04 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.5
Q ss_pred CcEEEEecCCcchHHHH
Q psy6275 73 QSVLVSAHTSAGKTVVA 89 (391)
Q Consensus 73 ~~~li~apTGsGKT~~~ 89 (391)
.-.+++||+|+|||...
T Consensus 24 ~~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34689999999999975
No 495
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=63.13 E-value=9 Score=31.92 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=22.9
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEE-cccHH
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT-TPIKA 111 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl-~P~~~ 111 (391)
+++-|+-|||||+..-...-..-..+..++++ -|...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t 40 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGT 40 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 56789999999998644432222345555554 36543
No 496
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=63.10 E-value=6.6 Score=34.22 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=21.4
Q ss_pred EEecCCcchHHHHHHHHHHHHhcCCeEEEEc
Q psy6275 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107 (391)
Q Consensus 77 i~apTGsGKT~~~~~~~~~~l~~~~~vlvl~ 107 (391)
..+..|.|||++....+......+.+|+++=
T Consensus 24 ~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 24 MSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp ECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4456789999987555444445678888874
No 497
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=63.01 E-value=7.6 Score=34.69 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=25.4
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
.+-+.+.+.-|.|||++....+......+.+|+++
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 45566778889999998765554444567888887
No 498
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.00 E-value=4.7 Score=41.30 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=18.2
Q ss_pred cCCcEEEEecCCcchHHHHHHHH
Q psy6275 71 NNQSVLVSAHTSAGKTVVAEYAI 93 (391)
Q Consensus 71 ~~~~~li~apTGsGKT~~~~~~~ 93 (391)
.+.+++++||+|+|||..+....
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la 228 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLA 228 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHH
Confidence 35789999999999998764433
No 499
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=62.97 E-value=8.5 Score=33.98 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=22.7
Q ss_pred EEEEecCCcchHHHHHHHHHHHHhcCCeEEEE
Q psy6275 75 VLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT 106 (391)
Q Consensus 75 ~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl 106 (391)
+.+++..|.|||++....+......+.+|+++
T Consensus 5 Iavs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 44578889999998755544444567788876
No 500
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=62.95 E-value=7.3 Score=32.74 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCcEEEEecCCcchHHHHHHHHHHHHhcCCeEEEE-ccc
Q psy6275 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYT-TPI 109 (391)
Q Consensus 72 ~~~~li~apTGsGKT~~~~~~~~~~l~~~~~vlvl-~P~ 109 (391)
++-+++-|+-|||||+..-. +.+.+..+..++.+ -|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~-L~~~L~~~~~v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINE-VYHRLVKDYDVIMTREPG 39 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHH-HHHHHTTTSCEEEEESST
T ss_pred CCEEEEECCCCCcHHHHHHH-HHHHHHCCCCEEEeeCCC
Confidence 34578889999999997533 33445556666554 354
Done!