Your job contains 1 sequence.
>psy6275
MIYYCLFCRESKTKACMKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDP
FQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREF
EEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKER
GYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFP
NGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDAAKAGDHKGGRKGGPKGGVQTNCFKIVK
MIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLP
QIENILPLLRRGIGIHHGVKPYGLWQSKKIN
The BLAST search returned 9 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6275
(391 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0001986 - symbol:l(2)35Df "lethal (2) 35Df" specie... 1417 5.1e-145 1
UNIPROTKB|F1MJX4 - symbol:SKIV2L2 "Uncharacterized protei... 1324 3.7e-135 1
UNIPROTKB|G3MYJ7 - symbol:SKIV2L2 "Uncharacterized protei... 1324 3.7e-135 1
UNIPROTKB|E2RCI5 - symbol:SKIV2L2 "Uncharacterized protei... 1319 1.2e-134 1
UNIPROTKB|F1SLL6 - symbol:SKIV2L2 "Uncharacterized protei... 1319 1.2e-134 1
UNIPROTKB|P42285 - symbol:SKIV2L2 "Superkiller viralicidi... 1315 3.3e-134 1
MGI|MGI:1919448 - symbol:Skiv2l2 "superkiller viralicidic... 1315 3.3e-134 1
ZFIN|ZDB-GENE-040426-2854 - symbol:skiv2l2 "superkiller v... 1313 5.4e-134 1
UNIPROTKB|F5H7E2 - symbol:SKIV2L2 "Superkiller viralicidi... 1269 2.5e-129 1
UNIPROTKB|F1MAH7 - symbol:F1MAH7 "Uncharacterized protein... 1229 4.3e-125 1
DICTYBASE|DDB_G0275633 - symbol:DDB_G0275633 "superkiller... 1191 4.6e-121 1
POMBASE|SPAC6F12.16c - symbol:mtr4 "ATP-dependent RNA hel... 1182 4.1e-120 1
ASPGD|ASPL0000070749 - symbol:mtr4 species:162425 "Emeric... 1167 1.6e-118 1
TAIR|locus:2026001 - symbol:MTR4 "homolog of yeast MTR4" ... 1148 1.6e-116 1
SGD|S000003586 - symbol:MTR4 "ATP-dependent 3'-5' RNA hel... 1146 2.7e-116 1
CGD|CAL0003794 - symbol:orf19.1335 species:5476 "Candida ... 1145 3.4e-116 1
UNIPROTKB|G4NH56 - symbol:MGG_03931 "FRQ-interacting RNA ... 1117 3.2e-113 1
WB|WBGene00012342 - symbol:mtr-4 species:6239 "Caenorhabd... 1109 2.2e-112 1
POMBASE|SPAC17H9.02 - symbol:SPAC17H9.02 "TRAMP complex A... 1078 4.3e-109 1
TAIR|locus:2063648 - symbol:HEN2 "hua enhancer 2" species... 1065 1.0e-107 1
GENEDB_PFALCIPARUM|PFF0100w - symbol:PFF0100w "putative A... 1020 6.0e-103 1
UNIPROTKB|F1N993 - symbol:F1N993 "Uncharacterized protein... 903 1.5e-90 1
DICTYBASE|DDB_G0277211 - symbol:DDB_G0277211 "superkiller... 765 6.5e-75 1
ASPGD|ASPL0000004985 - symbol:AN6007 species:162425 "Emer... 640 1.1e-74 2
CGD|CAL0002171 - symbol:orf19.6425 species:5476 "Candida ... 613 2.3e-73 2
FB|FBgn0039117 - symbol:tst "twister" species:7227 "Droso... 739 2.1e-72 1
ZFIN|ZDB-GENE-010430-5 - symbol:skiv2l "superkiller viral... 737 4.4e-72 1
SGD|S000004390 - symbol:SKI2 "Ski complex component and p... 602 1.9e-71 2
POMBASE|SPCC550.03c - symbol:SPCC550.03c "Ski complex RNA... 602 4.5e-71 2
WB|WBGene00008502 - symbol:skih-2 species:6239 "Caenorhab... 637 4.6e-71 2
UNIPROTKB|D4AE49 - symbol:D4AE49 "Uncharacterized protein... 710 4.3e-70 1
UNIPROTKB|F1RQW4 - symbol:SKIV2L "Uncharacterized protein... 715 1.0e-69 1
UNIPROTKB|F5H7B0 - symbol:SKIV2L "Helicase SKI2W" species... 708 1.9e-69 1
UNIPROTKB|F8VS23 - symbol:SKIV2L "Helicase SKI2W" species... 708 1.9e-69 1
UNIPROTKB|F1LP39 - symbol:Skiv2l "Protein Skiv2l" species... 711 2.4e-69 1
UNIPROTKB|B4DM01 - symbol:SKIV2L "cDNA FLJ57529, highly s... 708 2.7e-69 1
UNIPROTKB|F8VNU1 - symbol:SKIV2L "Helicase SKI2W" species... 708 2.7e-69 1
RGD|1303059 - symbol:Skiv2l "superkiller viralicidic acti... 711 2.8e-69 1
UNIPROTKB|E1BMS0 - symbol:LOC100139548 "Uncharacterized p... 711 2.8e-69 1
UNIPROTKB|E2RSD6 - symbol:SKIV2L "Uncharacterized protein... 711 2.8e-69 1
UNIPROTKB|Q15477 - symbol:SKIV2L "Helicase SKI2W" species... 708 6.0e-69 1
TAIR|locus:2075566 - symbol:AT3G46960 species:3702 "Arabi... 607 1.6e-68 2
UNIPROTKB|Q10701 - symbol:helY "Probable helicase HelY" s... 428 1.4e-43 2
TAIR|locus:2020573 - symbol:EMB25 "EMBRYO DEFECTIVE 25" s... 410 1.2e-41 2
UNIPROTKB|F1P0I1 - symbol:F1P0I1 "Uncharacterized protein... 215 8.7e-15 2
POMBASE|SPAC694.02 - symbol:SPAC694.02 "DEAD/DEAH box hel... 208 1.8e-14 3
UNIPROTKB|G4N3Z7 - symbol:MGG_05900 "Uncharacterized prot... 199 2.6e-14 2
WB|WBGene00016194 - symbol:C28H8.3 species:6239 "Caenorha... 205 6.1e-14 2
RGD|1560014 - symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box po... 200 7.4e-14 2
UNIPROTKB|J9P0M0 - symbol:DDX60 "Uncharacterized protein"... 202 1.7e-13 2
UNIPROTKB|E2QSY2 - symbol:DDX60 "Uncharacterized protein"... 202 1.7e-13 2
UNIPROTKB|Q8IY21 - symbol:DDX60 "Probable ATP-dependent R... 192 9.4e-13 2
UNIPROTKB|Q5H9U9 - symbol:DDX60L "Probable ATP-dependent ... 179 7.4e-11 2
WB|WBGene00013189 - symbol:Y54E2A.4 species:6239 "Caenorh... 172 6.6e-10 2
CGD|CAL0001532 - symbol:orf19.3098 species:5476 "Candida ... 166 1.2e-09 2
ZFIN|ZDB-GENE-061207-43 - symbol:hfm1 "HFM1, ATP-dependen... 140 1.8e-09 3
DICTYBASE|DDB_G0290389 - symbol:ascc3 "activating signal ... 183 2.0e-09 2
GENEDB_PFALCIPARUM|PF14_0370 - symbol:PF14_0370 "RNA heli... 157 4.5e-09 2
UNIPROTKB|Q8IL78 - symbol:PF14_0370 "DEAD/DEAH box helica... 157 4.5e-09 2
FB|FBgn0038344 - symbol:CG5205 species:7227 "Drosophila m... 164 2.0e-08 2
DICTYBASE|DDB_G0270042 - symbol:ascc3l "U5 small nuclear ... 168 2.5e-08 2
RGD|1584010 - symbol:Hfm1 "HFM1, ATP-dependent DNA helica... 158 4.6e-08 1
ASPGD|ASPL0000030426 - symbol:AN5514 species:162425 "Emer... 157 9.4e-08 1
TAIR|locus:2125677 - symbol:AT4G32700 species:3702 "Arabi... 113 1.1e-07 3
UNIPROTKB|I3LT20 - symbol:LOC100525691 "Uncharacterized p... 147 1.5e-07 1
UNIPROTKB|F1S4E9 - symbol:HFM1 "Uncharacterized protein" ... 155 1.6e-07 1
SGD|S000003220 - symbol:HFM1 "Meiosis specific DNA helica... 156 5.4e-07 2
UNIPROTKB|A2PYH4 - symbol:HFM1 "Probable ATP-dependent DN... 150 5.8e-07 1
UNIPROTKB|F1NMU1 - symbol:POLQ "Uncharacterized protein" ... 125 9.9e-07 2
DICTYBASE|DDB_G0279107 - symbol:DDB_G0279107 "Helicase PO... 147 1.0e-06 1
UNIPROTKB|E2RA34 - symbol:HFM1 "Uncharacterized protein" ... 147 1.2e-06 1
UNIPROTKB|E2R5U9 - symbol:HFM1 "Uncharacterized protein" ... 147 1.3e-06 1
UNIPROTKB|F1MFR1 - symbol:HFM1 "Uncharacterized protein" ... 143 3.4e-06 1
WB|WBGene00020964 - symbol:polq-1 species:6239 "Caenorhab... 142 4.8e-06 2
UNIPROTKB|F1PXD9 - symbol:POLQ "Uncharacterized protein" ... 122 6.8e-06 3
UNIPROTKB|G4MUH1 - symbol:MGG_07250 "DEAD/DEAH box helica... 135 7.3e-06 3
CGD|CAL0003134 - symbol:orf19.3980 species:5476 "Candida ... 135 7.5e-06 2
RGD|1309795 - symbol:Polq "polymerase (DNA directed), the... 125 8.7e-06 3
UNIPROTKB|D4A628 - symbol:Polq "Polymerase (DNA directed)... 125 8.7e-06 3
UNIPROTKB|O75643 - symbol:SNRNP200 "U5 small nuclear ribo... 150 9.1e-06 2
GENEDB_PFALCIPARUM|PFD1060w - symbol:PFD1060w "u5 small n... 115 9.7e-06 3
UNIPROTKB|Q8IFP1 - symbol:PFD1060w "U5 small nuclear ribo... 115 9.7e-06 3
UNIPROTKB|E1BH78 - symbol:LOC100850262 "Uncharacterized p... 149 1.2e-05 2
ASPGD|ASPL0000051297 - symbol:AN10194 species:162425 "Eme... 135 1.3e-05 2
SGD|S000003503 - symbol:SLH1 "Putative RNA helicase relat... 141 1.4e-05 2
WB|WBGene00012896 - symbol:snrp-200 species:6239 "Caenorh... 139 1.5e-05 1
UNIPROTKB|Q9U2G0 - symbol:Y46G5A.4 "Putative U5 small nuc... 139 1.5e-05 1
UNIPROTKB|F1LNJ2 - symbol:Ascc3l1 "Protein Ascc3l1" speci... 147 1.9e-05 2
TAIR|locus:2037375 - symbol:emb1507 "embryo defective 150... 135 4.1e-05 1
TAIR|locus:2059969 - symbol:AT2G42270 species:3702 "Arabi... 135 4.1e-05 1
UNIPROTKB|F5H6Y7 - symbol:SKIV2L "Helicase SKI2W" species... 129 6.5e-05 1
ZFIN|ZDB-GENE-081105-64 - symbol:si:ch211-251j10.5 "si:ch... 133 6.6e-05 1
SGD|S000000974 - symbol:BRR2 "RNA-dependent ATPase RNA he... 126 7.1e-05 2
FB|FBgn0002899 - symbol:mus301 "mutagen-sensitive 301" sp... 122 8.1e-05 2
UNIPROTKB|H0Y8H0 - symbol:DDX60L "Probable ATP-dependent ... 109 0.00013 2
UNIPROTKB|G4N5J1 - symbol:MGG_06124 "Activating signal co... 101 0.00020 3
UNIPROTKB|O75417 - symbol:POLQ "DNA polymerase theta" spe... 135 0.00023 2
WB|WBGene00021905 - symbol:helq-1 species:6239 "Caenorhab... 109 0.00030 2
MGI|MGI:1921941 - symbol:Tdrd9 "tudor domain containing 9... 124 0.00039 1
RGD|1306942 - symbol:Tdrd9 "tudor domain containing 9" sp... 124 0.00039 1
WARNING: Descriptions of 8 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0001986 [details] [associations]
symbol:l(2)35Df "lethal (2) 35Df" species:7227 "Drosophila
melanogaster" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014134 GO:GO:0022008 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG4581 GeneTree:ENSGT00690000102230 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:AF145638
RefSeq:NP_524929.1 UniGene:Dm.1748 SMR:Q9Y134 MINT:MINT-942655
STRING:Q9Y134 EnsemblMetazoa:FBtr0080760 GeneID:48782
KEGG:dme:Dmel_CG4152 UCSC:CG4152-RA FlyBase:FBgn0001986
InParanoid:Q9Y134 OrthoDB:EOG4K3JB5 GenomeRNAi:48782 NextBio:839548
Uniprot:Q9Y134
Length = 1055
Score = 1417 (503.9 bits), Expect = 5.1e-145, P = 5.1e-145
Identities = 276/374 (73%), Positives = 306/374 (81%)
Query: 10 ESKTKACMKV-IVVETLEA---CLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEA 65
+S T ++ IV L+A C HEVA PD EY PL PA+EYPFVLDPFQ++A
Sbjct: 100 DSATLEALRTRIVTHLLDAPKSCTHEVAAHPDQEYIPLKPFSGVPAKEYPFVLDPFQRQA 159
Query: 66 ILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125
ILCI+N+QSVLVSAHTSAGKTVVAEYAIA SL QRVIYTTPIKALSNQK+REF ++FK
Sbjct: 160 ILCIDNSQSVLVSAHTSAGKTVVAEYAIAKSLAAKQRVIYTTPIKALSNQKFREFTDEFK 219
Query: 126 DVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185
DVGL+TGDVTINPS+SCLIMTTEILRNMLYRGSEI REVGWV+FDEIHYMRDKERG VWE
Sbjct: 220 DVGLVTGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDKERGVVWE 279
Query: 186 ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDG 245
ETLILL DNVR+VFLSATIPNA QFA+WV HLH QPCHVVYTDYRPTPLQHY+FP GGDG
Sbjct: 280 ETLILLPDNVRYVFLSATIPNARQFAEWVCHLHKQPCHVVYTDYRPTPLQHYIFPAGGDG 339
Query: 246 IHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIME 304
IHLIVD+ +FKE N+ AM VLAN QTN FKIVKMIME
Sbjct: 340 IHLIVDEKGQFKEDNFTTAMAVLANAGEAGKGDQKGRHGGIKGTNAGQTNIFKIVKMIME 399
Query: 305 RNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIEN 364
RN APVI+FSFSKKDCEIYAMQMAKL+FN +E KLVD+VF+NAMDVL+EEDR+LPQ+EN
Sbjct: 400 RNFAPVIIFSFSKKDCEIYAMQMAKLDFNTPDEKKLVDEVFNNAMDVLTEEDRRLPQVEN 459
Query: 365 ILPLLRRGIGIHHG 378
+LPLLRRGIGIHHG
Sbjct: 460 VLPLLRRGIGIHHG 473
>UNIPROTKB|F1MJX4 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:DAAA02050346 EMBL:DAAA02050343 EMBL:DAAA02050344
EMBL:DAAA02050345 IPI:IPI00839454 Ensembl:ENSBTAT00000047363
Uniprot:F1MJX4
Length = 937
Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
Identities = 248/363 (68%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP D +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 97 VKVQSVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 156
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 157 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 216
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 217 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 276
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 277 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 336
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 337 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 392
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VFSNA+D LS+ED+KLPQ+EN+LPLL+RGIGI
Sbjct: 393 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGI 452
Query: 376 HHG 378
HHG
Sbjct: 453 HHG 455
>UNIPROTKB|G3MYJ7 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 EMBL:DAAA02050346 EMBL:DAAA02050343
EMBL:DAAA02050344 EMBL:DAAA02050345 Ensembl:ENSBTAT00000064767
Uniprot:G3MYJ7
Length = 605
Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
Identities = 248/363 (68%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP D +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 97 VKVQSVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 156
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 157 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 216
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 217 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 276
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 277 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 336
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 337 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 392
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VFSNA+D LS+ED+KLPQ+EN+LPLL+RGIGI
Sbjct: 393 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVENVLPLLKRGIGI 452
Query: 376 HHG 378
HHG
Sbjct: 453 HHG 455
>UNIPROTKB|E2RCI5 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102230 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 CTD:23517 EMBL:AAEX03001437
RefSeq:XP_849676.1 Ensembl:ENSCAFT00000010985 GeneID:607950
KEGG:cfa:607950 Uniprot:E2RCI5
Length = 1042
Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
Identities = 247/363 (68%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP D +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 99 VKVQSVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 158
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 159 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 218
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 219 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 278
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 279 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 338
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 339 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 394
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VFSNA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 395 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 454
Query: 376 HHG 378
HHG
Sbjct: 455 HHG 457
>UNIPROTKB|F1SLL6 [details] [associations]
symbol:SKIV2L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0000460 "maturation of 5.8S rRNA" evidence=IEA] [GO:0000178
"exosome (RNase complex)" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026
GeneTree:ENSGT00690000102230 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:FP236391 EMBL:CU929534 Ensembl:ENSSSCT00000018417
Uniprot:F1SLL6
Length = 1046
Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
Identities = 247/363 (68%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP D +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 100 VKVQSVETVEGCTHEVALPADEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 159
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 160 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 219
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 220 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 279
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 280 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 339
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 340 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 395
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VFSNA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 396 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 455
Query: 376 HHG 378
HHG
Sbjct: 456 HHG 458
>UNIPROTKB|P42285 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0000178 "exosome (RNase complex)"
evidence=IDA] [GO:0000460 "maturation of 5.8S rRNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 EMBL:D29641
EMBL:BX640789 EMBL:BC014669 EMBL:BC028604 EMBL:BC031779
EMBL:BC065258 EMBL:BC104996 EMBL:BC113509 IPI:IPI00647217
RefSeq:NP_056175.3 UniGene:Hs.274531 ProteinModelPortal:P42285
SMR:P42285 IntAct:P42285 STRING:P42285 PhosphoSite:P42285
DMDM:71153172 SWISS-2DPAGE:P42285 PaxDb:P42285 PeptideAtlas:P42285
PRIDE:P42285 DNASU:23517 Ensembl:ENST00000230640 GeneID:23517
KEGG:hsa:23517 UCSC:uc003jpy.4 CTD:23517 GeneCards:GC05P054605
HGNC:HGNC:18734 HPA:HPA037379 neXtProt:NX_P42285
PharmGKB:PA134901921 HOVERGEN:HBG104255 InParanoid:P42285
OrthoDB:EOG4D52WW PhylomeDB:P42285 ChiTaRS:SKIV2L2 GenomeRNAi:23517
NextBio:45957 ArrayExpress:P42285 Bgee:P42285 CleanEx:HS_SKIV2L2
Genevestigator:P42285 GermOnline:ENSG00000039123 Uniprot:P42285
Length = 1042
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 246/363 (67%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP + +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 99 VKVQSVETVEGCTHEVALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 158
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 159 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 218
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 219 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 278
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 279 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 338
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 339 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 394
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VFSNA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 395 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 454
Query: 376 HHG 378
HHG
Sbjct: 455 HHG 457
>MGI|MGI:1919448 [details] [associations]
symbol:Skiv2l2 "superkiller viralicidic activity 2-like 2
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000460 "maturation of 5.8S
rRNA" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919448 GO:GO:0005524
GO:GO:0005730 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 eggNOG:COG4581
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 KO:K12598
OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234 CTD:23517
HOVERGEN:HBG104255 OrthoDB:EOG4D52WW ChiTaRS:SKIV2L2 EMBL:AK012158
EMBL:BC029230 IPI:IPI00113134 RefSeq:NP_082427.1 UniGene:Mm.291029
ProteinModelPortal:Q9CZU3 SMR:Q9CZU3 IntAct:Q9CZU3 STRING:Q9CZU3
PhosphoSite:Q9CZU3 PaxDb:Q9CZU3 PRIDE:Q9CZU3
Ensembl:ENSMUST00000022281 GeneID:72198 KEGG:mmu:72198
UCSC:uc007rws.1 InParanoid:Q9CZU3 NextBio:335677 Bgee:Q9CZU3
Genevestigator:Q9CZU3 GermOnline:ENSMUSG00000016018 Uniprot:Q9CZU3
Length = 1040
Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
Identities = 246/363 (67%), Positives = 294/363 (80%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEVALP D +Y PL K A+EYPF+LD FQ+EAI C++NNQSVL
Sbjct: 97 VKVQSVETVEGCTHEVALPADEDYIPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVL 156
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 157 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 216
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 217 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 276
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 277 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 336
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 337 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 392
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VF+NA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 393 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 452
Query: 376 HHG 378
HHG
Sbjct: 453 HHG 455
>ZFIN|ZDB-GENE-040426-2854 [details] [associations]
symbol:skiv2l2 "superkiller viralicidic activity
2-like 2" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0031101 "fin regeneration"
evidence=IMP] [GO:0051781 "positive regulation of cell division"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2854 GO:GO:0005524 GO:GO:0051781 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031101
GO:GO:0008026 eggNOG:COG4581 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 CTD:23517 HOVERGEN:HBG104255
OrthoDB:EOG4D52WW EMBL:BC061456 IPI:IPI00481753 RefSeq:NP_999933.1
UniGene:Dr.75715 ProteinModelPortal:Q6P7X6 STRING:Q6P7X6
PRIDE:Q6P7X6 GeneID:406795 KEGG:dre:406795 NextBio:20818305
Bgee:Q6P7X6 Uniprot:Q6P7X6
Length = 1034
Score = 1313 (467.3 bits), Expect = 5.4e-134, P = 5.4e-134
Identities = 245/359 (68%), Positives = 292/359 (81%)
Query: 22 VETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHT 81
VET+E C HEV LP + EY PL K A+EYPF+LDPFQ+EAILCI+NNQSVLVSAHT
Sbjct: 92 VETVEGCTHEVVLPANEEYTPLKPRVGKAAKEYPFILDPFQREAILCIDNNQSVLVSAHT 151
Query: 82 SAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSS 141
SAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTINP++S
Sbjct: 152 SAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTAS 211
Query: 142 CLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201
CL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV VFLS
Sbjct: 212 CLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHHVFLS 271
Query: 202 ATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNY 260
AT+PNA QFA+W+ HLH QPCHVVYTDYRPTPLQHY+FP GGDG+HL+VD+N +F+E N+
Sbjct: 272 ATVPNARQFAEWICHLHKQPCHVVYTDYRPTPLQHYIFPAGGDGLHLVVDENGEFREDNF 331
Query: 261 QVAMNVLANXXXXXXXXXXXXXXXXXXXXXV-QTNCFKIVKMIMERNLAPVIVFSFSKKD 319
AM VL + +N FKIVKMIMERN PVI+FSFSKK+
Sbjct: 332 NTAMQVLRDAGDTGGNTGAKWDPKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKE 391
Query: 320 CEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
CE YA+Q++KL+FN EE KLV++VF+NA D LS+ED+KLPQ+E++LPLL+RGIGIHHG
Sbjct: 392 CEAYALQVSKLDFNTDEEKKLVEEVFNNATDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 450
>UNIPROTKB|F5H7E2 [details] [associations]
symbol:SKIV2L2 "Superkiller viralicidic activity 2-like 2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:18734 ChiTaRS:SKIV2L2 EMBL:AC010480
EMBL:AC020728 IPI:IPI01011073 ProteinModelPortal:F5H7E2 SMR:F5H7E2
Ensembl:ENST00000545714 UCSC:uc011cqi.2 ArrayExpress:F5H7E2
Bgee:F5H7E2 Uniprot:F5H7E2
Length = 941
Score = 1269 (451.8 bits), Expect = 2.5e-129, P = 2.5e-129
Identities = 237/348 (68%), Positives = 283/348 (81%)
Query: 32 VALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEY 91
VALP + +Y PL K A+EYPF+LD FQ+EAI C++NNQSVLVSAHTSAGKTV AEY
Sbjct: 13 VALPAEEDYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEY 72
Query: 92 AIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILR 151
AIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTINP++SCL+MTTEILR
Sbjct: 73 AIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILR 132
Query: 152 NMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFA 211
+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV +VFLSATIPNA QFA
Sbjct: 133 SMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFA 192
Query: 212 QWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLANX 270
+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F+E N+ AM VL +
Sbjct: 193 EWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDA 252
Query: 271 XXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKL 330
+N FKIVKMIMERN PVI+FSFSKKDCE YA+QM KL
Sbjct: 253 GDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKL 308
Query: 331 NFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
+FN EE K+V++VFSNA+D LS+ED+KLPQ+E++LPLL+RGIGIHHG
Sbjct: 309 DFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 356
>UNIPROTKB|F1MAH7 [details] [associations]
symbol:F1MAH7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000178 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000460 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 IPI:IPI00372914 PRIDE:F1MAH7
Ensembl:ENSRNOT00000013683 ArrayExpress:F1MAH7 Uniprot:F1MAH7
Length = 1046
Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
Identities = 232/363 (63%), Positives = 281/363 (77%)
Query: 17 MKVIVVETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
+KV VET+E C HEV+ P Y P + + +PF F +E + C+ NQSVL
Sbjct: 99 VKVQSVETVEGCTHEVSWPQTHRYPPASPACGTKLPSFPFSYSIFYREMVECLTINQSVL 158
Query: 77 VSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI 136
VSAHTSAGKTV AEYAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTI
Sbjct: 159 VSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTI 218
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVR 196
NP++SCL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD ERG VWEET+ILL DNV
Sbjct: 219 NPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVH 278
Query: 197 FVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KF 255
+VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPLQHY+FP GGDG+HL+VD+N F
Sbjct: 279 YVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDF 338
Query: 256 KEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSF 315
+E N+ AM VL + +N FKIVKMIMERN PVI+FSF
Sbjct: 339 REDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSF 394
Query: 316 SKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGI 375
SKKDCE YA+QM KL+FN EE K+V++VF+NA+D LS+ED+KLPQ+E++LPLL+RGIGI
Sbjct: 395 SKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGI 454
Query: 376 HHG 378
HHG
Sbjct: 455 HHG 457
>DICTYBASE|DDB_G0275633 [details] [associations]
symbol:DDB_G0275633 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275633 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 KO:K12598 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_643574.1
ProteinModelPortal:Q86IE2 STRING:Q86IE2 EnsemblProtists:DDB0233453
GeneID:8620161 KEGG:ddi:DDB_G0275633 InParanoid:Q86IE2
ProtClustDB:CLSZ2444279 Uniprot:Q86IE2
Length = 1128
Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
Identities = 228/378 (60%), Positives = 289/378 (76%)
Query: 10 ESKTKACMKVIVVETLEACLHEVALPP-DLEYQP-LAQSKE--KPAREYPFVLDPFQKEA 65
E++T + T ++C+HEV LPP ++ P L E KPAR YPF LDPFQ +
Sbjct: 160 ENRTATGGYITAAGTSKSCIHEVLLPPGEVNDDPNLYNPPEPIKPARTYPFKLDPFQATS 219
Query: 66 ILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK 125
I CIE N+SVLVSAHTSAGKTVVAEY+IA++L+ QRVIYT+PIKALSNQK+R+ +E F+
Sbjct: 220 IACIERNESVLVSAHTSAGKTVVAEYSIATALRDGQRVIYTSPIKALSNQKFRDLQETFQ 279
Query: 126 DVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185
DVGL+TGD+TIN ++SCL+MTTEILR+MLYRGSE REV WVIFDEIHY+RDKERG VWE
Sbjct: 280 DVGLMTGDITINANASCLVMTTEILRSMLYRGSETMREVSWVIFDEIHYLRDKERGVVWE 339
Query: 186 ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDG 245
ET+ILL D+V+FVFLSATIPNA +FA W++ +H QPCHVVYT+YRP PLQHY+FP+GGDG
Sbjct: 340 ETIILLPDSVKFVFLSATIPNAREFAAWIAKIHKQPCHVVYTEYRPIPLQHYIFPSGGDG 399
Query: 246 IHLIVDDNK-FKEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIME 304
+HL+VD+N F+E N+ + L+N ++C+KIVKMIME
Sbjct: 400 LHLVVDENGVFREENF---LKSLSNLQQPEMGGQSGASRKRGGGNKGPSDCYKIVKMIME 456
Query: 305 RNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIEN 364
RN PVI+FSFSKK+CE YA+QM+KL+FN +E V+ +F+NA+D LSE D++LP + N
Sbjct: 457 RNYQPVIIFSFSKKECETYALQMSKLDFNNDDEKNAVETIFNNAIDSLSESDKQLPAVIN 516
Query: 365 ILPLLRRGIGIHH-GVKP 381
ILPLL+RGIGIHH G+ P
Sbjct: 517 ILPLLKRGIGIHHAGLLP 534
>POMBASE|SPAC6F12.16c [details] [associations]
symbol:mtr4 "ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4" species:4896 "Schizosaccharomyces pombe" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=ISO] [GO:0016078 "tRNA catabolic process" evidence=ISO]
[GO:0031499 "TRAMP complex" evidence=IDA] [GO:0043630 "ncRNA
polyadenylation involved in polyadenylation-dependent ncRNA
catabolic process" evidence=ISO] [GO:0071049 "nuclear retention of
pre-mRNA with aberrant 3'-ends at the site of transcription"
evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
PomBase:SPAC6F12.16c GO:GO:0005524 EMBL:CU329670 GO:GO:0005730
GO:GO:0003676 GO:GO:0031499 GO:GO:0043630 GO:GO:0016078
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696
Pfam:PF13234 EMBL:AB027847 PIR:T11667 RefSeq:NP_593302.1
ProteinModelPortal:O14232 STRING:O14232 EnsemblFungi:SPAC6F12.16c.1
GeneID:2541639 KEGG:spo:SPAC6F12.16c OMA:DDRISAD OrthoDB:EOG4S1XG7
NextBio:20802732 GO:GO:0071049 Uniprot:O14232
Length = 1117
Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
Identities = 230/370 (62%), Positives = 282/370 (76%)
Query: 21 VVETLEACLHEVALPPDLEYQPLAQSKEK--PAREYPFVLDPFQKEAILCIENNQSVLVS 78
VVE H+V++PP+ +Y P+++ K PAR YPF LDPFQ +I CIE +SVLVS
Sbjct: 160 VVELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYPFTLDPFQAVSIACIERQESVLVS 219
Query: 79 AHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINP 138
AHTSAGKTVVAEYA+A SL+ QRVIYT+PIKALSNQKYRE +F DVGL+TGDVTINP
Sbjct: 220 AHTSAGKTVVAEYAVAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINP 279
Query: 139 SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFV 198
++CL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRDKERG VWEET+ILL D FV
Sbjct: 280 DATCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDKSHFV 339
Query: 199 FLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKFKE 257
FLSATIPNA QFA+W++ +H QPCHVVYTD+RPTPLQHYLFP+G DGIHL+VD+ + F+E
Sbjct: 340 FLSATIPNAMQFAEWITKIHRQPCHVVYTDFRPTPLQHYLFPSGSDGIHLVVDEKSNFRE 399
Query: 258 HNYQVAMNVLANXXX---XXXXXXXXXXXXXXXXXXVQ--TNCFKIVKMIMERNLAPVIV 312
N+Q AM+ L V+ ++ +KIVKMIM +N PVIV
Sbjct: 400 ENFQRAMSALMEKQGDDPAAMATKGNAKKGKTGKGGVKGPSDIYKIVKMIMVKNYNPVIV 459
Query: 313 FSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRG 372
FSFSK++CE A+QM+KL+ N+ E LV +F+NA++ LSE+DR+LPQIE+ILPLLRRG
Sbjct: 460 FSFSKRECEALALQMSKLDMNDQTERDLVTTIFNNAVNQLSEKDRELPQIEHILPLLRRG 519
Query: 373 IGIHH-GVKP 381
IGIHH G+ P
Sbjct: 520 IGIHHSGLLP 529
>ASPGD|ASPL0000070749 [details] [associations]
symbol:mtr4 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0031499 "TRAMP
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:BN001303
GO:GO:0031499 GO:GO:0043629 GO:GO:0071035 GO:GO:0071038
EMBL:AACD01000076 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000467 GO:GO:0071042 GO:GO:0071051 GO:GO:0008143
GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475 GO:GO:0034476
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 OrthoDB:EOG4S1XG7 GO:GO:0071049 RefSeq:XP_662016.1
ProteinModelPortal:Q5B4W8 STRING:Q5B4W8
EnsemblFungi:CADANIAT00006045 GeneID:2872204 KEGG:ani:AN4412.2
Uniprot:Q5B4W8
Length = 1073
Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
Identities = 225/363 (61%), Positives = 281/363 (77%)
Query: 30 HEVALPPDLEYQPLAQSK--EKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTV 87
H+VA+PP Y P++Q K E PAR +PF LDPFQ+ A+ I+ +SVLVSAHTSAGKTV
Sbjct: 123 HQVAIPPKYPYVPISQHKPPENPARVWPFTLDPFQQVAVSSIQRGESVLVSAHTSAGKTV 182
Query: 88 VAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147
VAEYAIA SLK +QRVIYT+PIKALSNQKYREF +F DVGL+TGDVTINP+++CL+MTT
Sbjct: 183 VAEYAIAQSLKNNQRVIYTSPIKALSNQKYREFAAEFGDVGLMTGDVTINPTATCLVMTT 242
Query: 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207
EILR+MLYRGSEI REV WV+FDEIHYMRD RG VWEET+ILL D VR+VFLSATIPNA
Sbjct: 243 EILRSMLYRGSEIMREVAWVVFDEIHYMRDATRGVVWEETIILLPDKVRYVFLSATIPNA 302
Query: 208 SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNK-FKEHNYQVAMNV 266
QFA+W++ +H+QPCHVVYTD+RPTPLQHY FP G +G+HLIVD+ F+E N+Q AM+
Sbjct: 303 MQFAEWITKMHNQPCHVVYTDFRPTPLQHYFFPAGSEGMHLIVDEKGVFREENFQKAMSS 362
Query: 267 LANXXXXXXXXXXXXXXXXXXXXXV-------QTNCFKIVKMIMERNLAPVIVFSFSKKD 319
+A+ + + + +KIVKMIM ++L PVIVFSFSK++
Sbjct: 363 IADKKGDDPADALAKRKGKGKDKKLNKGGTQEKDDIYKIVKMIMLKSLNPVIVFSFSKRE 422
Query: 320 CEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-G 378
CE YA++M L FN+ E ++V VF++A+++LSEEDR LPQI+NILPLLRRGIG+HH G
Sbjct: 423 CEFYALKMKSLAFNDDSEKEMVSKVFNSAIEMLSEEDRNLPQIQNILPLLRRGIGVHHSG 482
Query: 379 VKP 381
+ P
Sbjct: 483 LLP 485
>TAIR|locus:2026001 [details] [associations]
symbol:MTR4 "homolog of yeast MTR4" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0031125 "rRNA 3'-end processing" evidence=IMP] [GO:0000398
"mRNA splicing, via spliceosome" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0000741 "karyogamy" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006406 "mRNA export from nucleus" evidence=RCA] [GO:0006606
"protein import into nucleus" evidence=RCA] [GO:0009560 "embryo sac
egg cell differentiation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009909 "regulation of
flower development" evidence=RCA] [GO:0010074 "maintenance of
meristem identity" evidence=RCA] [GO:0010212 "response to ionizing
radiation" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0043687 "post-translational protein modification"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048825 "cotyledon development"
evidence=RCA] [GO:0051301 "cell division" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
EMBL:AC007258 UniGene:At.74832 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0031125 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 OMA:ENFQKAM InterPro:IPR025696
Pfam:PF13234 EMBL:AK176836 IPI:IPI00536033 PIR:E96621
RefSeq:NP_176185.1 UniGene:At.43462 ProteinModelPortal:Q9XIF2
SMR:Q9XIF2 PaxDb:Q9XIF2 PRIDE:Q9XIF2 EnsemblPlants:AT1G59760.1
GeneID:842269 KEGG:ath:AT1G59760 TAIR:At1g59760 InParanoid:Q9XIF2
PhylomeDB:Q9XIF2 ProtClustDB:CLSN2679700 ArrayExpress:Q9XIF2
Genevestigator:Q9XIF2 Uniprot:Q9XIF2
Length = 988
Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
Identities = 212/368 (57%), Positives = 285/368 (77%)
Query: 20 IVVETLEACLHEVALPPDLEYQPLAQS--KEKPAREYPFVLDPFQKEAILCIENNQSVLV 77
I+ E L C+H+V+ P + Y PLA S + PA+++PF LD FQ EAI C++N +SV+V
Sbjct: 30 IINEELVGCVHDVSFPEN--YVPLAPSVHNKPPAKDFPFTLDSFQSEAIKCLDNGESVMV 87
Query: 78 SAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTIN 137
SAHTSAGKTVVA YAIA SLK++QRVIYT+PIKALSNQKYR+F+E+F DVGL+TGDVTI+
Sbjct: 88 SAHTSAGKTVVASYAIAMSLKENQRVIYTSPIKALSNQKYRDFKEEFSDVGLMTGDVTID 147
Query: 138 PSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRF 197
P++SCL+MTTEILR+M Y+GSEI REV W+IFDE+HYMRD ERG VWEE++++ N RF
Sbjct: 148 PNASCLVMTTEILRSMQYKGSEIMREVAWIIFDEVHYMRDSERGVVWEESIVMAPKNSRF 207
Query: 198 VFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKFK 256
VFLSAT+PNA +FA WV+ +H QPCH+VYTDYRPTPLQHY+FP GG+G++L+VD+ +KF
Sbjct: 208 VFLSATVPNAKEFADWVAKVHQQPCHIVYTDYRPTPLQHYVFPAGGNGLYLVVDEKSKFH 267
Query: 257 EHNYQVAMNVLA--NXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFS 314
E ++Q ++N L N +++ FK+VKMI++R PVI+FS
Sbjct: 268 EDSFQKSLNALVPTNESDKKRDNGKFQKGLVIGKLGEESDIFKLVKMIIQRQYDPVILFS 327
Query: 315 FSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIG 374
FSKK+CE AMQM+K+ N +E V+ +F++A+D+LS++D+KLPQ+ NILP+L+RGIG
Sbjct: 328 FSKKECEALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILPILKRGIG 387
Query: 375 IHH-GVKP 381
+HH G+ P
Sbjct: 388 VHHSGLLP 395
>SGD|S000003586 [details] [associations]
symbol:MTR4 "ATP-dependent 3'-5' RNA helicase of the DExD/H
family" species:4932 "Saccharomyces cerevisiae" [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IMP] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0043629
"ncRNA polyadenylation" evidence=IDA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IGI;IDA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IMP] [GO:0071031 "nuclear mRNA surveillance of
mRNA 3'-end processing" evidence=IGI;IMP] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031499 "TRAMP complex" evidence=IDA;IPI] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034459 "ATP-dependent 3'-5' RNA
helicase activity" evidence=IMP;IDA] [GO:0034476 "U5 snRNA 3'-end
processing" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0071049
"nuclear retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IGI] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0071051
"polyadenylation-dependent snoRNA 3'-end processing" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011254 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
SGD:S000003586 GO:GO:0005524 GO:GO:0005730 EMBL:BK006943
GO:GO:0016491 GO:GO:0031499 GO:GO:0043629 GO:GO:0071035
GO:GO:0071038 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
SUPFAM:SSF56821 GO:GO:0000467 GO:GO:0071042 GO:GO:0071051
GO:GO:0008143 GO:GO:0034459 eggNOG:COG4581 GO:GO:0034475
GO:GO:0034476 GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047
KO:K12598 OMA:ENFQKAM InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 EMBL:Z49325 PIR:S56822
RefSeq:NP_012485.1 PDB:2XGJ PDB:3L9O PDBsum:2XGJ PDBsum:3L9O
ProteinModelPortal:P47047 SMR:P47047 DIP:DIP-6394N IntAct:P47047
MINT:MINT-620894 STRING:P47047 PaxDb:P47047 PeptideAtlas:P47047
EnsemblFungi:YJL050W GeneID:853397 KEGG:sce:YJL050W CYGD:YJL050w
EvolutionaryTrace:P47047 NextBio:973882 Genevestigator:P47047
GermOnline:YJL050W Uniprot:P47047
Length = 1073
Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
Identities = 220/361 (60%), Positives = 273/361 (75%)
Query: 30 HEVALPPDLEYQPLAQSKE-KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVV 88
H+VALPP+ +Y P+A+ K AR YPF LDPFQ AI CI+ +SVLVSAHTSAGKTVV
Sbjct: 121 HQVALPPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVV 180
Query: 89 AEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE 148
AEYAIA SLK QRVIYT+PIKALSNQKYRE +F DVGL+TGD+TINP + CL+MTTE
Sbjct: 181 AEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTE 240
Query: 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNAS 208
ILR+MLYRGSE+ REV WVIFDE+HYMRDKERG VWEET+ILL D VR+VFLSATIPNA
Sbjct: 241 ILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAM 300
Query: 209 QFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNK-FKEHNYQVAMNVL 267
+FA+W+ +H QPCH+VYT++RPTPLQHYLFP GDGI+L+VD+ F+E N+Q AM +
Sbjct: 301 EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 360
Query: 268 ANX------XXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSFSKKDCE 321
+N + + +KIVKMI ++ PVIVFSFSK+DCE
Sbjct: 361 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCE 420
Query: 322 IYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVK 380
A++M+KL+FN +E + + +F+NA+ +L E DR+LPQI++ILPLLRRGIGIHH G+
Sbjct: 421 ELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLL 480
Query: 381 P 381
P
Sbjct: 481 P 481
>CGD|CAL0003794 [details] [associations]
symbol:orf19.1335 species:5476 "Candida albicans" [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0034459 "ATP-dependent
3'-5' RNA helicase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031499 "TRAMP complex" evidence=IEA] [GO:0034476
"U5 snRNA 3'-end processing" evidence=IEA] [GO:0071049 "nuclear
retention of pre-mRNA with aberrant 3'-ends at the site of
transcription" evidence=IEA] [GO:0000467 "exonucleolytic trimming
to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic
process" evidence=IEA] [GO:0043629 "ncRNA polyadenylation"
evidence=IEA] [GO:0071051 "polyadenylation-dependent snoRNA 3'-end
processing" evidence=IEA] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IEA]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end processing"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003794 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581
EMBL:AACQ01000188 EMBL:AACQ01000187 KO:K12598 InterPro:IPR025696
Pfam:PF13234 RefSeq:XP_711657.1 RefSeq:XP_711675.1
RefSeq:XP_888948.1 STRING:Q59PN6 GeneID:3646717 GeneID:3646739
GeneID:3703907 KEGG:cal:CaO19.1335 KEGG:cal:CaO19.8915
KEGG:cal:CaO19_1335 Uniprot:Q59PN6
Length = 1106
Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
Identities = 221/362 (61%), Positives = 269/362 (74%)
Query: 30 HEVALPPDLEYQPLAQSKEK-PAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVV 88
H+VA+PP Y P+ + K K AR YPF LDPFQ AI CI+ N+SVLVSAHTSAGKTVV
Sbjct: 156 HQVAIPPSYPYVPIGEHKRKHEARTYPFTLDPFQDTAISCIDRNESVLVSAHTSAGKTVV 215
Query: 89 AEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTE 148
AEYAIA SL+ QRVIYT+PIKALSNQK+RE + F DVGL+TGDVTINP + CL+MTTE
Sbjct: 216 AEYAIAQSLRDKQRVIYTSPIKALSNQKFRELQAIFGDVGLMTGDVTINPDAGCLVMTTE 275
Query: 149 ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNAS 208
ILR+MLYRGSE+ REV WV+FDE+HYMRDK RG VWEET+ILL D V +VFLSATIPNA
Sbjct: 276 ILRSMLYRGSEVMREVAWVVFDEVHYMRDKSRGVVWEETIILLPDKVHYVFLSATIPNAM 335
Query: 209 QFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVL 267
+FA+W+ +H+QPCHVVYTD+RPTPLQHYLFP GGDGIHL+VD+ F+E N+Q AM +
Sbjct: 336 EFAEWIVKIHNQPCHVVYTDFRPTPLQHYLFPAGGDGIHLVVDEKGTFREENFQKAMATI 395
Query: 268 ANXXXXXXXXXXXXXXXXXXXXXVQTN-------CFKIVKMIMERNLAPVIVFSFSKKDC 320
++ N +KIVKMI + PVIVFSFSK+DC
Sbjct: 396 SDNSGDDPASSDSGRGNKKGKTNKGRNHQDGKGDIYKIVKMIYMKKYNPVIVFSFSKRDC 455
Query: 321 EIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GV 379
E A++M+KL+FN EE + +F NA+++L E DR+LPQI+NILPLL+RGIGIHH G+
Sbjct: 456 ESLALKMSKLDFNTDEERNSLTQIFYNAIELLPEADRELPQIKNILPLLKRGIGIHHSGL 515
Query: 380 KP 381
P
Sbjct: 516 LP 517
>UNIPROTKB|G4NH56 [details] [associations]
symbol:MGG_03931 "FRQ-interacting RNA helicase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0031499 GO:GO:0043629
GO:GO:0071035 GO:GO:0071038 EMBL:CM001236 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000467 GO:GO:0071042
GO:GO:0071051 GO:GO:0008143 GO:GO:0034459 GO:GO:0034475
GO:GO:0034476 KO:K12598 InterPro:IPR025696 Pfam:PF13234
GO:GO:0071049 RefSeq:XP_003719933.1 EnsemblFungi:MGG_03931T0
GeneID:2677161 KEGG:mgr:MGG_03931 Uniprot:G4NH56
Length = 1102
Score = 1117 (398.3 bits), Expect = 3.2e-113, P = 3.2e-113
Identities = 218/364 (59%), Positives = 279/364 (76%)
Query: 30 HEVALPPDLEYQ--PLAQSK--EKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGK 85
H+VALPPDL+Y PL++ K E+PAR+Y F LDPFQ ++ IE ++SVLVSAHTSAGK
Sbjct: 145 HQVALPPDLDYVYVPLSEHKPPEEPARKYAFKLDPFQSISVASIERDESVLVSAHTSAGK 204
Query: 86 TVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIM 145
TVVAEYAIA LK++QRVIYT+PIKALSNQK+R+F+ +F DVGL+TGDVTINP++SCL+M
Sbjct: 205 TVVAEYAIAHCLKRNQRVIYTSPIKALSNQKFRDFQAEFGDVGLMTGDVTINPTASCLVM 264
Query: 146 TTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIP 205
TTEILR+MLYRGSEITREVGWV+FDEIHYMRD RG VWEET+I+L D VR+VFLSATIP
Sbjct: 265 TTEILRSMLYRGSEITREVGWVVFDEIHYMRDATRGVVWEETIIMLPDKVRYVFLSATIP 324
Query: 206 NASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNK-FKEHNYQVAM 264
NA QFA+W++ +H Q CHVVYTD+RPTPLQ+Y+FP GGDGI+++VD+ F+E + A+
Sbjct: 325 NAFQFAEWIAKIHRQACHVVYTDFRPTPLQNYVFPAGGDGIYIMVDEKGVFREKKFMEAI 384
Query: 265 NVLANXXXXXXXXXXXXXXXXXXXXXVQT------NCFKIVKMIMERNLAPVIVFSFSKK 318
+A T + KI+KMIM R PVIVF+FSK+
Sbjct: 385 GSIAGKNDDDDSMPRQKGKGKNKKAVKNTVPDSKADITKIIKMIMRRAYHPVIVFNFSKR 444
Query: 319 DCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH- 377
+CE A++++ LNFN E KLV+D+F NA+ LSEED+ LPQI+++LPLL++GIG+HH
Sbjct: 445 ECENLALKVSTLNFNHESEQKLVEDIFRNAIMSLSEEDQGLPQIQHLLPLLKKGIGVHHS 504
Query: 378 GVKP 381
G+ P
Sbjct: 505 GLLP 508
>WB|WBGene00012342 [details] [associations]
symbol:mtr-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0040022
"feminization of hermaphroditic germ-line" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0040011 InterPro:IPR018247
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0040020 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0040022 GO:GO:0008026 eggNOG:COG4581 EMBL:Z70271 PIR:T26282
RefSeq:NP_501757.1 ProteinModelPortal:Q23223 SMR:Q23223
MINT:MINT-6670291 STRING:Q23223 PaxDb:Q23223 EnsemblMetazoa:W08D2.7
GeneID:177824 KEGG:cel:CELE_W08D2.7 CTD:177824 WormBase:W08D2.7
GeneTree:ENSGT00690000102230 HOGENOM:HOG000163047 InParanoid:Q23223
KO:K12598 OMA:ENFQKAM NextBio:898538 InterPro:IPR025696
Pfam:PF13234 Uniprot:Q23223
Length = 1026
Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
Identities = 218/379 (57%), Positives = 281/379 (74%)
Query: 10 ESKTKACMKVIVVETL----EACLHEVALPPDLEYQPLAQ-SKEKPAREYPFVLDPFQKE 64
E +A M+ I+V T+ E C HEVA+PP+ E+ L + S +PA+ YPF LD FQK+
Sbjct: 73 EEVEEARMENIIVHTIRTDNENCTHEVAIPPNAEFAELRENSGTEPAKYYPFQLDAFQKQ 132
Query: 65 AILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQF 124
AILCI+NNQSVLVSAHTSAGKTVVA YAIA L++ QRVIYT+PIKALSNQKYRE EE+F
Sbjct: 133 AILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQRVIYTSPIKALSNQKYRELEEEF 192
Query: 125 KDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVW 184
KDVGL+TGDVT+NP +SCL+MTTEILR+MLYRGSEI +EVGWV++DEIHYMRDKERG VW
Sbjct: 193 KDVGLMTGDVTLNPDASCLVMTTEILRSMLYRGSEIMKEVGWVVYDEIHYMRDKERGVVW 252
Query: 185 EETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGD 244
EET+IL+S N++ FLSATIPNA QFAQWV+ + QP +VVYTDYRPTPLQH+++P GG+
Sbjct: 253 EETIILMSKNIKQAFLSATIPNARQFAQWVASIKQQPVNVVYTDYRPTPLQHWIYPVGGE 312
Query: 245 GIHLIVD-DNKFKEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIM 303
G++ +V+ +F+E ++ AM+ LA +N KI++ +
Sbjct: 313 GMYEVVNVKGEFREDKFRDAMSGLATAGDSAGSFNKRRTGGGTQG---DSNVLKIIRSVA 369
Query: 304 ERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIE 363
+ IVFSFS+K+CE YA+ + ++FN+ E +V V+ +A+ LS ED+KLPQI
Sbjct: 370 SNDGLNCIVFSFSRKECESYAISLKDMDFNKDHEKGMVKSVYESAIAQLSPEDQKLPQIL 429
Query: 364 NILPLLRRGIGIHH-GVKP 381
NILPLLRRGIG+HH G+ P
Sbjct: 430 NILPLLRRGIGVHHSGLMP 448
>POMBASE|SPAC17H9.02 [details] [associations]
symbol:SPAC17H9.02 "TRAMP complex ATP-dependent RNA
helicase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISO]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0006364
"rRNA processing" evidence=ISO] [GO:0016078 "tRNA catabolic
process" evidence=ISO] [GO:0031499 "TRAMP complex" evidence=ISO]
[GO:0043630 "ncRNA polyadenylation involved in
polyadenylation-dependent ncRNA catabolic process" evidence=ISO]
[GO:0071049 "nuclear retention of pre-mRNA with aberrant 3'-ends at
the site of transcription" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC17H9.02 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GO:GO:0003676 GO:GO:0031499
GO:GO:0043630 GO:GO:0016078 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG4581
HOGENOM:HOG000163047 KO:K12598 InterPro:IPR025696 Pfam:PF13234
OrthoDB:EOG4S1XG7 GO:GO:0071049 PIR:T37868 RefSeq:NP_593572.1
ProteinModelPortal:O13799 STRING:O13799 EnsemblFungi:SPAC17H9.02.1
GeneID:2542173 KEGG:spo:SPAC17H9.02 OMA:FARWISE NextBio:20803244
Uniprot:O13799
Length = 1030
Score = 1078 (384.5 bits), Expect = 4.3e-109, P = 4.3e-109
Identities = 207/357 (57%), Positives = 260/357 (72%)
Query: 29 LHEVALPPDLEYQPLAQS--KEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKT 86
LH+V +P D +Y PL + + PA+ YPF LDPFQ AI C+E +SVLVSAHTSAGKT
Sbjct: 95 LHKVVVPDDYDYIPLNKHIPSDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKT 154
Query: 87 VVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMT 146
V+AEYAIA +LK QRVIYT+PIK+LSNQKYRE +F DVGL+TGDV+INPS+SCLIMT
Sbjct: 155 VIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGLMTGDVSINPSASCLIMT 214
Query: 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206
TEILR MLY+ SEI E+ WVIFDE+HYMRDK+RG VWEETLILL D +RF+FLSAT+PN
Sbjct: 215 TEILRAMLYKNSEIMHEIAWVIFDEVHYMRDKDRGVVWEETLILLPDAIRFIFLSATLPN 274
Query: 207 ASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD-NKFKEHNYQVAMN 265
A QFA+W+S +H QPCHVVYTDYRPTPLQH+++P G DGI+++VD+ NKFK N++ +
Sbjct: 275 ALQFARWISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKNKFKTENFKKVLE 334
Query: 266 VLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAM 325
VL + +I+ M++ P+IVF FSKK+CEI A
Sbjct: 335 VLDHSTRQENYSKSSKKVKKSSSLE------RIINMVLSNRYDPIIVFCFSKKECEINAH 388
Query: 326 QMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
Q KL+ N+TE +LV ++F +A++ LSEEDR L Q E + LL RGIGIHH G+ P
Sbjct: 389 QFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLLLRGIGIHHSGLLP 445
>TAIR|locus:2063648 [details] [associations]
symbol:HEN2 "hua enhancer 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0010093
"specification of floral organ identity" evidence=IMP] [GO:0016070
"RNA metabolic process" evidence=TAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
[GO:0003002 "regionalization" evidence=RCA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=RCA] [GO:0006396 "RNA
processing" evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0035196 "production of
miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0003676 GO:GO:0010093
GO:GO:0016070 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC005171 GO:GO:0003724 HOGENOM:HOG000163047
KO:K12598 InterPro:IPR025696 Pfam:PF13234 EMBL:BT005794
IPI:IPI00539432 PIR:B84481 RefSeq:NP_565338.1 UniGene:At.20667
ProteinModelPortal:Q9ZVW2 SMR:Q9ZVW2 IntAct:Q9ZVW2 PRIDE:Q9ZVW2
EnsemblPlants:AT2G06990.1 GeneID:815269 KEGG:ath:AT2G06990
TAIR:At2g06990 InParanoid:Q9ZVW2 OMA:TFDRVCD PhylomeDB:Q9ZVW2
ProtClustDB:CLSN2688028 ArrayExpress:Q9ZVW2 Genevestigator:Q9ZVW2
Uniprot:Q9ZVW2
Length = 995
Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
Identities = 204/372 (54%), Positives = 270/372 (72%)
Query: 27 ACLHEVALPPDLEYQPLAQSK-----EKP------AREYPFVLDPFQKEAILCIENNQSV 75
AC+HEVA+P D Y P + + P A+ YPF LDPFQ ++ C+E +S+
Sbjct: 42 ACVHEVAVPND--YTPTKEETIHGTLDNPVFNGDMAKTYPFKLDPFQSVSVACLERKESI 99
Query: 76 LVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVT 135
LVSAHTSAGKT VAEYAIA + + QRVIYT+P+KALSNQKYRE + +FKDVGL+TGDVT
Sbjct: 100 LVSAHTSAGKTAVAEYAIAMAFRDKQRVIYTSPLKALSNQKYRELQHEFKDVGLMTGDVT 159
Query: 136 INPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNV 195
++P++SCL+MTTEILR MLYRGSE+ +EV WVIFDEIHYM+D+ERG VWEE++I L +
Sbjct: 160 LSPNASCLVMTTEILRAMLYRGSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAI 219
Query: 196 RFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNK- 254
+ VFLSAT+ NA++FA+W+ +LH QPCHVVYTD+RPTPLQHY FP GG G++L+VDDN+
Sbjct: 220 KMVFLSATMSNATEFAEWICYLHKQPCHVVYTDFRPTPLQHYAFPMGGGGLYLVVDDNEQ 279
Query: 255 FKEHNYQVAMNVL----ANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPV 310
F+E ++ + +N ++ +KIVKMIMER PV
Sbjct: 280 FREDSFVKMQDTFPKPKSNDGKKSANGKSGGRGAKGGGGPGDSDVYKIVKMIMERKFEPV 339
Query: 311 IVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLR 370
I+FSFS+++CE +A+ M+KL+FN EE ++V+ VF+NAM L+EEDR LP IE +LPLL+
Sbjct: 340 IIFSFSRRECEQHALSMSKLDFNTDEEKEVVEQVFNNAMQCLNEEDRSLPAIELMLPLLQ 399
Query: 371 RGIGIHH-GVKP 381
RGI +HH G+ P
Sbjct: 400 RGIAVHHSGLLP 411
>GENEDB_PFALCIPARUM|PFF0100w [details] [associations]
symbol:PFF0100w "putative ATP dependent RNA
helicase" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL844505 HOGENOM:HOG000163047 KO:K12598
InterPro:IPR025696 Pfam:PF13234 RefSeq:XP_966011.1
ProteinModelPortal:C6KSM1 EnsemblProtists:PFF0100w:mRNA
GeneID:3885738 KEGG:pfa:PFF0100w EuPathDB:PlasmoDB:PF3D7_0602100
OMA:RGIVIIM ProtClustDB:CLSZ2433467 Uniprot:C6KSM1
Length = 1350
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 199/374 (53%), Positives = 263/374 (70%)
Query: 11 SKTKACMKVIVVETLEA---CLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAIL 67
SKT V+V+E C+H+ P + + + PAR Y F LD FQK++I
Sbjct: 206 SKTINNDDVLVLEEFGGDVNCIHKCVRPQSYVHNEIKEPLI-PARTYKFELDTFQKKSIE 264
Query: 68 CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDV 127
C+E N+SVLVSAHTSAGKTV+AEYAIA L+ QRVIYT+PIKALSNQKYR+ E+FKDV
Sbjct: 265 CLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRVIYTSPIKALSNQKYRDLGEEFKDV 324
Query: 128 GLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET 187
GLITGD++INP +S ++MTTEILR+MLYRGS +T+EV WVIFDEIHYMRD++RG +WEET
Sbjct: 325 GLITGDISINPEASIIVMTTEILRSMLYRGSSLTKEVKWVIFDEIHYMRDRDRGVIWEET 384
Query: 188 LILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIH 247
+ILL VRF+FLSATIPN QFA+WVS + Q CH+VYTDYRPTPLQHY++P + +
Sbjct: 385 IILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQACHIVYTDYRPTPLQHYIYPTSSESVF 444
Query: 248 LIVDDNK-FKEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQT--NCFKIVKMIME 304
LI D+NK FK+ N+ A+NV+ +T + KIV+M
Sbjct: 445 LICDENKDFKKDNFIKAVNVIKEKMNTSEENHHQQHINKYTKKMRKTTYDIEKIVQMCHS 504
Query: 305 RNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIEN 364
RN P+I+F+FSKK+CE+ A M K++ E +++ +++ NA+ +L+++DR LPQ++
Sbjct: 505 RNYTPLIIFAFSKKECEVNATAMHKIDLTSDTEKEVIKELYENAIRILADDDRSLPQVQF 564
Query: 365 ILPLLRRGIGIHHG 378
ILPLL RGIGIHHG
Sbjct: 565 ILPLLLRGIGIHHG 578
>UNIPROTKB|F1N993 [details] [associations]
symbol:F1N993 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0000460 "maturation of 5.8S rRNA"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 GO:GO:0000178 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000460
GO:GO:0008026 GeneTree:ENSGT00690000102230 OMA:ENFQKAM
InterPro:IPR025696 Pfam:PF13234 EMBL:AADN02054537 EMBL:AADN02054530
EMBL:AADN02054531 EMBL:AADN02054532 EMBL:AADN02054533
EMBL:AADN02054534 EMBL:AADN02054535 EMBL:AADN02054536
IPI:IPI00599020 Ensembl:ENSGALT00000023719 Uniprot:F1N993
Length = 1031
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 171/298 (57%), Positives = 222/298 (74%)
Query: 83 AGKTV-VAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSS 141
+G T+ + +YAIA +L++ QRVI+T+PIKALSNQKYRE E+F+DVGL+TGDVTINP++S
Sbjct: 153 SGSTITLLKYAIALALREKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTAS 212
Query: 142 CLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLS 201
CL+MTTEILR+MLYRGSE+ REV WVIFDEIHYMRD E+G + ++ + N ++ +
Sbjct: 213 CLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSEKGNFEDIFIVAIPGNTLYIIME 272
Query: 202 ATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDN-KFKEHNY 260
+ FA+ + QPCHV+YTDYRPTPLQHY+FP GGDG+ L+VD+N F+E N+
Sbjct: 273 LSYYLGDGFAEKIIFSIKQPCHVIYTDYRPTPLQHYIFPAGGDGLRLVVDENGDFREDNF 332
Query: 261 QVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSFSKKDC 320
AM VL + +N FKIVKMIMERN PVI+FSFSKKDC
Sbjct: 333 NTAMQVLRDAGDLAKGDQKGRKGGTKG----PSNVFKIVKMIMERNFQPVIIFSFSKKDC 388
Query: 321 EIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
E YA+QM KL+FN EE K+V++VF+NA+D LS+ED+KLPQ+E++LPLL+RGIGIHHG
Sbjct: 389 EAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHG 446
>DICTYBASE|DDB_G0277211 [details] [associations]
symbol:DDB_G0277211 "superkiller viralicidic activity
2-like protein" species:44689 "Dictyostelium discoideum"
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0277211 GO:GO:0005524
GO:GO:0003676 EMBL:AAFI02000019 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC RefSeq:XP_642686.1
ProteinModelPortal:Q86K90 EnsemblProtists:DDB0233454 GeneID:8620875
KEGG:ddi:DDB_G0277211 InParanoid:Q86K90 Uniprot:Q86K90
Length = 1378
Score = 765 (274.4 bits), Expect = 6.5e-75, P = 6.5e-75
Identities = 157/345 (45%), Positives = 214/345 (62%)
Query: 42 PLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ 101
PL+ PA EYPF LD FQK+AI+ +E +SV ++AHTSAGKTV+AEYAIA + K
Sbjct: 418 PLSDLITNPAIEYPFDLDSFQKQAIVHMEQGESVFITAHTSAGKTVIAEYAIAMAAKNMT 477
Query: 102 RVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEIT 161
R IYT+PIKALSNQK+R+F+ F DVGLITGDV+I+PSSSCL++TTEILR+MLY+G+++
Sbjct: 478 RAIYTSPIKALSNQKFRDFKNTFNDVGLITGDVSISPSSSCLVLTTEILRSMLYKGADLI 537
Query: 162 REVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQP 221
R++ WVIFDE+HY+ D ERG VWEE +I+L V+ VFLSAT+ N +FAQW+ P
Sbjct: 538 RDIEWVIFDEVHYLNDLERGVVWEEVIIMLPPYVKMVFLSATVSNPLEFAQWIGRTKQLP 597
Query: 222 CHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNK-FKEHNYQVAMNVLA---NXXXXXXXX 277
+V+ T RP PL+HY+ + + IVD N+ F Y A N L N
Sbjct: 598 IYVIGTTKRPIPLEHYIHTPSNE-LFKIVDSNRNFLPSGYNSAYNSLYKTDNNKGGGGGG 656
Query: 278 XXXXXXXXXXXXXVQTNCF---KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK-LNFN 333
N K++ + ++ PVI+FSFSK C+ YA + + +N
Sbjct: 657 RGGHNQQQQQRGGSGNNISGWSKLINTLKDKQQLPVIIFSFSKNKCQEYAGSLGQSVNLT 716
Query: 334 ETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHHG 378
+ E + ++ L E+D+ LPQI + LL RGIG+HHG
Sbjct: 717 QGNEKSQIRVFIEQSLGRLCEDDKSLPQILQMKELLERGIGVHHG 761
>ASPGD|ASPL0000004985 [details] [associations]
symbol:AN6007 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:BN001301 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000102 GO:GO:0008026 eggNOG:COG4581
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
RefSeq:XP_663611.1 ProteinModelPortal:Q5B0C3 STRING:Q5B0C3
EnsemblFungi:CADANIAT00007011 GeneID:2871132 KEGG:ani:AN6007.2
Uniprot:Q5B0C3
Length = 1293
Score = 640 (230.4 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 124/219 (56%), Positives = 163/219 (74%)
Query: 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110
ARE+PF LD FQKEA+ +EN SV V+AHTSAGKTVVAEYAIA + K + IYT+PIK
Sbjct: 316 AREWPFELDTFQKEAVYHLENGDSVFVAAHTSAGKTVVAEYAIALAAKHMTKAIYTSPIK 375
Query: 111 ALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFD 170
ALSNQK+R+F+ F DVG++TGDV INP +SCLIMTTEILR+MLYRG+++ R+V +VIFD
Sbjct: 376 ALSNQKFRDFKNTFDDVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFD 435
Query: 171 EIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR 230
E+HY+ D ERG VWEE +I+L ++V + LSAT+PN +FA WV + +V+ T R
Sbjct: 436 EVHYVNDLERGVVWEEVIIMLPEHVTLILLSATVPNTQEFASWVGRTKKKDIYVISTAKR 495
Query: 231 PTPLQHYLFPNGGDGIHLIVDDNK-FKEHNYQVAMNVLA 268
P PL+HYL+ G D IVD NK F E ++ A ++++
Sbjct: 496 PVPLEHYLWA-GKDKFK-IVDSNKRFLESGWKQADDIIS 532
Score = 153 (58.9 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 31/82 (37%), Positives = 46/82 (56%)
Query: 297 KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEED 356
++V+ + + NL P +F FSKK CE A ++ +F E L+ ++ L +ED
Sbjct: 617 QVVQHLRKENLLPACIFVFSKKRCEQNADSLSNQDFCNASEKSLIHITIEKSLTRLKQED 676
Query: 357 RKLPQIENILPLLRRGIGIHHG 378
R LPQI + LL RGI +HHG
Sbjct: 677 RTLPQILRLRELLSRGIAVHHG 698
>CGD|CAL0002171 [details] [associations]
symbol:orf19.6425 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0055087 "Ski complex" evidence=IEA]
[GO:0070478 "nuclear-transcribed mRNA catabolic process, 3'-5'
exonucleolytic nonsense-mediated decay" evidence=IEA] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
CGD:CAL0002171 GO:GO:0005524 GO:GO:0003676 EMBL:AACQ01000073
EMBL:AACQ01000072 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG4581 KO:K12599 RefSeq:XP_716180.1
RefSeq:XP_716263.1 ProteinModelPortal:Q5A337 STRING:Q5A337
GeneID:3642143 GeneID:3642220 KEGG:cal:CaO19.13783
KEGG:cal:CaO19.6425 Uniprot:Q5A337
Length = 1245
Score = 613 (220.8 bits), Expect = 2.3e-73, Sum P(2) = 2.3e-73
Identities = 124/242 (51%), Positives = 173/242 (71%)
Query: 30 HEVALPPDLE-YQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVV 88
H V L +E +Q L + AR +PF LD FQKEA+ +E SV V+AHTSAGKTVV
Sbjct: 264 HVVDLDHKIEDFQELVPNM---ARTWPFELDTFQKEAVFHLEQGDSVFVAAHTSAGKTVV 320
Query: 89 AEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD--VGLITGDVTINPSSSCLIMT 146
AEYAIA + + + IYT+PIKALSNQK+R+F+E FKD VGLITGDV INP ++CLIMT
Sbjct: 321 AEYAIAMAHRNMTKCIYTSPIKALSNQKFRDFKETFKDIDVGLITGDVQINPEANCLIMT 380
Query: 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206
TEILR+MLYRG+++ R+V +VIFDE+HY+ D +RG VWEE +I+L D+V+++ LSAT+PN
Sbjct: 381 TEILRSMLYRGADLIRDVEFVIFDEVHYVNDIDRGVVWEEVIIMLPDHVKYILLSATVPN 440
Query: 207 ASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNK-FKEHNYQVAMN 265
+FA WV + +V+ T RP PL+ +F + + + +VD N+ F+E+ ++ +
Sbjct: 441 TFEFANWVGRTKQKDIYVISTPKRPVPLE--IFVSAKNQLFKVVDANRRFQENEFRKHKD 498
Query: 266 VL 267
+L
Sbjct: 499 LL 500
Score = 167 (63.8 bits), Expect = 2.3e-73, Sum P(2) = 2.3e-73
Identities = 34/81 (41%), Positives = 46/81 (56%)
Query: 298 IVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDR 357
+V + NL P +VF FSKK CE YA + ++FN E + A+ L +EDR
Sbjct: 570 LVNYMKSNNLLPAVVFVFSKKRCEEYADSLRSVDFNNAREKSEIHMFIDRAVGRLKKEDR 629
Query: 358 KLPQIENILPLLRRGIGIHHG 378
+LPQI I +L RGI +HHG
Sbjct: 630 ELPQILKIREMLGRGIAVHHG 650
>FB|FBgn0039117 [details] [associations]
symbol:tst "twister" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 EMBL:AJ276896
ProteinModelPortal:Q9BI21 SMR:Q9BI21 STRING:Q9BI21 PaxDb:Q9BI21
PRIDE:Q9BI21 FlyBase:FBgn0039117 InParanoid:Q9BI21
OrthoDB:EOG46HDRK ArrayExpress:Q9BI21 Bgee:Q9BI21 Uniprot:Q9BI21
Length = 1197
Score = 739 (265.2 bits), Expect = 2.1e-72, P = 2.1e-72
Identities = 154/350 (44%), Positives = 211/350 (60%)
Query: 41 QPLAQSKEK---PAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL 97
QP+ KE+ PA ++PF LD FQK+AIL +E Q V V+AHTSAGKTVVAEYAIA S
Sbjct: 243 QPINNFKEQIPCPAMDFPFELDVFQKQAILKLEQRQYVFVAAHTSAGKTVVAEYAIALSK 302
Query: 98 KQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRG 157
+ R IYT+PIKALSNQKYR+F + FKDVGLITGD+ I P++SCLIMTTEILR+MLY G
Sbjct: 303 RDLTRTIYTSPIKALSNQKYRDFRKTFKDVGLITGDLQIEPTASCLIMTTEILRSMLYCG 362
Query: 158 SEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHL 217
S++TR++ WVIFDE+HY+ + ERG+VWEE +ILL ++V + LSAT+PN + A WV
Sbjct: 363 SDVTRDLEWVIFDEVHYINNPERGHVWEEVIILLPEHVNIIMLSATVPNTLELADWVGST 422
Query: 218 HHQPCHVVYTDYRPTPLQHYLFPNGG----DGIHLIVD-DNKFKEHNYQVAMNVLANXXX 272
+ +V+ T RP PL H+L+ G D I L+VD K+ + NY+ A+
Sbjct: 423 KKRKVYVISTLKRPVPLTHFLYTGAGGKSRDDIFLLVDAQGKYLQGNYEKAVE-RKKEMQ 481
Query: 273 XXXXXXXXXXXXXXXXXXVQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF 332
Q ++ + N+ PV+ F+ S+ C+ + ++
Sbjct: 482 GKAKGGGGGPRNHLNAKQEQYTWIGLIDFLRRSNMMPVVAFTLSRNRCDSNLAALQSVDL 541
Query: 333 NETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
N +E V F + L DR +PQ+ + L RGIG+HH G+ P
Sbjct: 542 NTEKEKGAVQKFFLQCLAKLKPPDRTIPQVLVLKDALERGIGVHHSGILP 591
>ZFIN|ZDB-GENE-010430-5 [details] [associations]
symbol:skiv2l "superkiller viralicidic activity 2 (S.
cerevisiae homolog)-like" species:7955 "Danio rerio" [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-010430-5 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GeneTree:ENSGT00690000102154 EMBL:FP102194 EMBL:FP067438
IPI:IPI00490616 Ensembl:ENSDART00000089609 OMA:TIMASAD Bgee:F1R881
Uniprot:F1R881
Length = 1249
Score = 737 (264.5 bits), Expect = 4.4e-72, P = 4.4e-72
Identities = 154/360 (42%), Positives = 214/360 (59%)
Query: 33 ALPPDLEYQPLAQSKEK---PAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVA 89
A+P D+ P A ++ PA +YPF LD FQK+AIL +E + SV V+AHTSAGKTVVA
Sbjct: 292 AIPVDIS-SPCADFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVA 350
Query: 90 EYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEI 149
EYAIA S K R IYT+PIKALSNQK+R+F+ F DVGL+TGDV +NP SCLIMTTEI
Sbjct: 351 EYAIALSQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLNPEGSCLIMTTEI 410
Query: 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQ 209
LR+MLY GSE+ R++ WVIFDE+HY+ D ERG VWEE LI+L ++V + LSAT+PNA +
Sbjct: 411 LRSMLYNGSEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVE 470
Query: 210 FAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDG----IHLIVD-DNKFKEHNYQVAM 264
F++W+ + + +V+ T RP PL+HYL+ + +++D F Y A+
Sbjct: 471 FSEWIGRIKKRHIYVISTIKRPVPLEHYLYTGNSTKTQKELFMLLDATGNFLTKGYYAAV 530
Query: 265 NVLANXXXXXXXXXXXXXXXXXXXXXVQTNCF--KIVKMIMERNLAPVIVFSFSKKDCEI 322
Q ++ + +R PV+ F+FS+ C+
Sbjct: 531 EAKKERTSKHAQSFGTKNVSQHNTTASQDRAVWQTLLNYLSQRQQTPVVAFTFSRTRCDE 590
Query: 323 YAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
A + L+ + E + ++ L DR+LPQI + LL+RGIG+HH G+ P
Sbjct: 591 NARSLTSLDLTTSIEKSEIHSFLQKSLTRLRGGDRQLPQILLMRDLLKRGIGVHHSGILP 650
>SGD|S000004390 [details] [associations]
symbol:SKI2 "Ski complex component and putative RNA helicase"
species:4932 "Saccharomyces cerevisiae" [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IGI;IMP] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA;IPI] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IMP] [GO:0070481
"nuclear-transcribed mRNA catabolic process, non-stop decay"
evidence=IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 SGD:S000004390 GO:GO:0005524
GO:GO:0006417 GO:GO:0003677 EMBL:BK006945 GO:GO:0051607
GO:GO:0003723 EMBL:U19729 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:Z18944 EMBL:L13469 GO:GO:0008026 GO:GO:0003724
GO:GO:0070478 GO:GO:0070481 eggNOG:COG4581 KO:K05544
RefSeq:NP_013505.4 GeneID:851117 KEGG:sce:YLR401C
InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087 HOGENOM:HOG000163048
KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R PIR:S55954
RefSeq:NP_013502.3 PDB:4A4K PDB:4A4Z PDBsum:4A4K PDBsum:4A4Z
ProteinModelPortal:P35207 SMR:P35207 DIP:DIP-5887N IntAct:P35207
MINT:MINT-662639 STRING:P35207 PaxDb:P35207 PeptideAtlas:P35207
EnsemblFungi:YLR398C GeneID:851114 KEGG:sce:YLR398C CYGD:YLR398c
GeneTree:ENSGT00690000102154 NextBio:967830 Genevestigator:P35207
GermOnline:YLR398C Uniprot:P35207
Length = 1287
Score = 602 (217.0 bits), Expect = 1.9e-71, Sum P(2) = 1.9e-71
Identities = 126/259 (48%), Positives = 177/259 (68%)
Query: 12 KTKACMKVIVVETLEACLHEVALPPDLE-YQPLAQSKEKPAREYPFVLDPFQKEAILCIE 70
+TK K + V+ A H V L +E + L + PAR +PF LD FQKEA+ +E
Sbjct: 288 RTKPVSKSVPVKKEWA--HVVDLNHKIENFDELIPN---PARSWPFELDTFQKEAVYHLE 342
Query: 71 NNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDV--G 128
SV V+AHTSAGKTVVAEYAIA + + + IYT+PIKALSNQK+R+F+E F DV G
Sbjct: 343 QGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIG 402
Query: 129 LITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETL 188
LITGDV INP ++CLIMTTEILR+MLYRG+++ R+V +VIFDE+HY+ D++RG VWEE +
Sbjct: 403 LITGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVI 462
Query: 189 ILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHL 248
I+L +V+F+ LSAT+PN +FA W+ + +V+ T RP PL+ ++ + I +
Sbjct: 463 IMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKK-ELIPV 521
Query: 249 IVDDNKFKEHNYQVAMNVL 267
I +++F E N++ +L
Sbjct: 522 INQNSEFLEANFRKHKEIL 540
Score = 161 (61.7 bits), Expect = 1.9e-71, Sum P(2) = 1.9e-71
Identities = 34/82 (41%), Positives = 47/82 (57%)
Query: 297 KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEED 356
+IV + +R L P++VF FSKK CE YA + +NF +E + ++ L +ED
Sbjct: 616 EIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKED 675
Query: 357 RKLPQIENILPLLRRGIGIHHG 378
R LPQI LL RGI +HHG
Sbjct: 676 RDLPQILKTRSLLERGIAVHHG 697
>POMBASE|SPCC550.03c [details] [associations]
symbol:SPCC550.03c "Ski complex RNA helicase Ski2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006402 "mRNA catabolic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0055087 "Ski complex" evidence=ISO]
[GO:0071276 "cellular response to cadmium ion" evidence=IMP]
[GO:0071585 "detoxification of cadmium ion" evidence=IMP]
[GO:2000765 "regulation of cytoplasmic translation" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC550.03c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:2000765
EMBL:CU329672 GO:GO:0071276 GO:GO:0071585 GO:GO:0003723
GO:GO:0006402 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003724 eggNOG:COG4581 GO:GO:0055087 PIR:T41378
RefSeq:NP_588095.1 ProteinModelPortal:O59801 STRING:O59801
EnsemblFungi:SPCC550.03c.1 GeneID:2538841 KEGG:spo:SPCC550.03c
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC OrthoDB:EOG4WM82R
NextBio:20800023 Uniprot:O59801
Length = 1213
Score = 602 (217.0 bits), Expect = 4.5e-71, Sum P(2) = 4.5e-71
Identities = 117/218 (53%), Positives = 157/218 (72%)
Query: 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110
A ++PF LD FQKEAI +E SV V+AHTSAGKTVVAEYAIA + K + IYT+PIK
Sbjct: 274 ALDFPFELDNFQKEAIYHLEMGDSVFVAAHTSAGKTVVAEYAIALAQKHMTKAIYTSPIK 333
Query: 111 ALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFD 170
ALSNQK+R+F+ +F+DVG++TGDV +NP SCL+MTTEILR+MLYRG+++ R+V +VIFD
Sbjct: 334 ALSNQKFRDFKHKFEDVGILTGDVQVNPEGSCLLMTTEILRSMLYRGADLIRDVEFVIFD 393
Query: 171 EIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR 230
E+HY+ D ERG VWEE +I+L +V + LSAT+PN +FA WV + +V+ T R
Sbjct: 394 EVHYVNDLERGVVWEEVIIMLPPHVTLILLSATVPNTKEFASWVGRTKKKNIYVISTLKR 453
Query: 231 PTPLQHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVL 267
P PL+HYL+ + IVD + +F Y+ A + L
Sbjct: 454 PVPLEHYLWVK--QNMFKIVDQHGRFLMDGYKSANDAL 489
Score = 156 (60.0 bits), Expect = 4.5e-71, Sum P(2) = 4.5e-71
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 298 IVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDR 357
++ + ++NL PVIVF FSKK CE Y + + N +E V V A+ L +EDR
Sbjct: 541 LIGHLHKQNLLPVIVFVFSKKRCEEYVDTLTNRDLNNHQEKSEVHVVIEKAVARLKKEDR 600
Query: 358 KLPQIENILPLLRRGIGIHHG 378
LPQI + +L RG+ +HHG
Sbjct: 601 LLPQIGRMREMLSRGLAVHHG 621
>WB|WBGene00008502 [details] [associations]
symbol:skih-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG4581 EMBL:Z68341
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC
GeneTree:ENSGT00690000102154 PIR:T20487 RefSeq:NP_502084.2
ProteinModelPortal:Q19103 SMR:Q19103 STRING:Q19103 PaxDb:Q19103
EnsemblMetazoa:F01G4.3 GeneID:178017 KEGG:cel:CELE_F01G4.3
UCSC:F01G4.3 CTD:178017 WormBase:F01G4.3 InParanoid:Q19103
NextBio:899374 Uniprot:Q19103
Length = 1266
Score = 637 (229.3 bits), Expect = 4.6e-71, Sum P(2) = 4.6e-71
Identities = 115/207 (55%), Positives = 160/207 (77%)
Query: 39 EYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK 98
EY+ L + AR+YPF LDPFQ+ ++LC+E +S+ V+AHTSAGKTVVAEYAIA
Sbjct: 277 EYKRLVPTM---ARKYPFSLDPFQQSSVLCMERGESLFVAAHTSAGKTVVAEYAIALCQA 333
Query: 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGS 158
R +YT+PIKALSNQK+R+F++ F DVGL+TGD+ ++P ++CLIMTTEILR+MLY GS
Sbjct: 334 HKTRAVYTSPIKALSNQKFRDFKQIFGDVGLVTGDIQLHPEAACLIMTTEILRSMLYNGS 393
Query: 159 EITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLH 218
E+ R++ WV+FDE+HY+ ++ERG+VWEE LI+L +V+ V LSAT+PN +FA WV +
Sbjct: 394 EVIRDLEWVVFDEVHYINNEERGHVWEEVLIMLPAHVKIVMLSATVPNCVEFADWVGRIK 453
Query: 219 HQPCHVVYTDYRPTPLQHYLFPNGGDG 245
++ +V+ TD RP PL+H+L+ G DG
Sbjct: 454 NRKINVISTDRRPVPLEHFLY-TGQDG 479
Score = 121 (47.7 bits), Expect = 4.6e-71, Sum P(2) = 4.6e-71
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 309 PVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPL 368
P++VF FS+K C+ A +A +N E + V FS + L D++LPQ+ + L
Sbjct: 564 PMVVFVFSRKRCDENAQMLASMNLTTEVEKQHVRLFFSQCVQRLKGSDKELPQVLTMRDL 623
Query: 369 LRRGIGIHH-GVKP 381
RG +HH G+ P
Sbjct: 624 CLRGFAVHHSGILP 637
>UNIPROTKB|D4AE49 [details] [associations]
symbol:D4AE49 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR012961 Pfam:PF00271 Pfam:PF08148 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
GeneTree:ENSGT00690000102230 InterPro:IPR025696 Pfam:PF13234
IPI:IPI00776783 PRIDE:D4AE49 Ensembl:ENSRNOT00000060695
ArrayExpress:D4AE49 Uniprot:D4AE49
Length = 764
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 131/205 (63%), Positives = 158/205 (77%)
Query: 175 MRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPL 234
MRD ERG VWEET+ILL DNV +VFLSATIPNA QFA+W+ HLH QPCHV+YTDYRPTPL
Sbjct: 1 MRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPL 60
Query: 235 QHYLFPNGGDGIHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXXXXXXXXXVQT 293
QHY+FP GGDG+HL+VD+N F+E N+ AM VL + +
Sbjct: 61 QHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKG----PS 116
Query: 294 NCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLS 353
N FKIVKMIMERN PVI+FSFSKKDCE YA+QM KL+FN EE K+V++VF+NA+D LS
Sbjct: 117 NVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLS 176
Query: 354 EEDRKLPQIENILPLLRRGIGIHHG 378
+ED+KLPQ+E++LPLL+RGIGIHHG
Sbjct: 177 DEDKKLPQVEHVLPLLKRGIGIHHG 201
>UNIPROTKB|F1RQW4 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:CT956038 Ensembl:ENSSSCT00000001566 ArrayExpress:F1RQW4
Uniprot:F1RQW4
Length = 1246
Score = 715 (256.8 bits), Expect = 1.0e-69, P = 1.0e-69
Identities = 152/361 (42%), Positives = 211/361 (58%)
Query: 31 EVALPPDLEYQPLAQSKE---KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTV 87
E A+P D+ P+ +PA ++ F D FQK+AIL +E + SV V+AHTSAGKTV
Sbjct: 282 EWAIPVDVT-SPVGDFYRLIPQPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTV 340
Query: 88 VAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTT 147
VAEYAIA + K R IYT+PIKALSNQK+R+F F DVGL+TGDV ++P +SCLIMTT
Sbjct: 341 VAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTT 400
Query: 148 EILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207
EILR+MLY GS++ R++ WVIFDE+HY+ D ERG VWEE LI+L D+V + LSAT+PNA
Sbjct: 401 EILRSMLYSGSDVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNA 460
Query: 208 SQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLF----PNGGDGIHLIVDDN-KFKEHNYQV 262
+FA W+ L + +V+ T RP PL+HYLF P + L++D F Y
Sbjct: 461 LEFADWIGRLKRRQIYVISTVARPVPLEHYLFTGNSPKTQGELFLLLDSRGSFHTKGYYA 520
Query: 263 AMNVLANXXXXXXXXXXXXXXXXXXXXXVQTNCF-KIVKMIMERNLAPVIVFSFSKKDCE 321
A+ + ++ + R PV+VF+FS+ C+
Sbjct: 521 AVEAKKERMSKHAQTFGAKQPTNQGGPAQDRGVYLSLLASLRAREQLPVVVFTFSRGRCD 580
Query: 322 IYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVK 380
A + L+ + E + + L DR+LPQ+ ++ LL RG+G+HH G+
Sbjct: 581 EQASGLTSLDLTTSSEKSEIHLFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGIL 640
Query: 381 P 381
P
Sbjct: 641 P 641
>UNIPROTKB|F5H7B0 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 EMBL:AL645922
InterPro:IPR025696 Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L
IPI:IPI01021910 SMR:F5H7B0 Ensembl:ENST00000544581
Ensembl:ENST00000546549 Uniprot:F5H7B0
Length = 1053
Score = 708 (254.3 bits), Expect = 1.9e-69, P = 1.9e-69
Identities = 147/340 (43%), Positives = 203/340 (59%)
Query: 49 KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108
+PA ++ F D FQK+AIL +E + SV V+AHTSAGKTVVAEYAIA + K R IYT+P
Sbjct: 109 QPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP 168
Query: 109 IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168
IKALSNQK+R+F F DVGL+TGDV ++P +SCLIMTTEILR+MLY GS++ R++ WVI
Sbjct: 169 IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI 228
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
FDE+HY+ D ERG VWEE LI+L D+V + LSAT+PNA +FA W+ L + +V+ T
Sbjct: 229 FDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV 288
Query: 229 YRPTPLQHYLFPNGGD---G-IHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXX 283
RP PL+HYLF G + L++D F Y A+
Sbjct: 289 TRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 348
Query: 284 XXXXXXXVQTNCF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342
+ ++ + R PV+VF+FS+ C+ A + L+ + E +
Sbjct: 349 THQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH 408
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
+ L DR+LPQ+ ++ LL RG+G+HH G+ P
Sbjct: 409 LFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILP 448
>UNIPROTKB|F8VS23 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00945125
SMR:F8VS23 Ensembl:ENST00000546908 Ensembl:ENST00000552714
Ensembl:ENST00000552746 Ensembl:ENST00000553255 UCSC:uc011ghl.1
Uniprot:F8VS23
Length = 1053
Score = 708 (254.3 bits), Expect = 1.9e-69, P = 1.9e-69
Identities = 147/340 (43%), Positives = 203/340 (59%)
Query: 49 KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108
+PA ++ F D FQK+AIL +E + SV V+AHTSAGKTVVAEYAIA + K R IYT+P
Sbjct: 109 QPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP 168
Query: 109 IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168
IKALSNQK+R+F F DVGL+TGDV ++P +SCLIMTTEILR+MLY GS++ R++ WVI
Sbjct: 169 IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI 228
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
FDE+HY+ D ERG VWEE LI+L D+V + LSAT+PNA +FA W+ L + +V+ T
Sbjct: 229 FDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV 288
Query: 229 YRPTPLQHYLFPNGGD---G-IHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXX 283
RP PL+HYLF G + L++D F Y A+
Sbjct: 289 TRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 348
Query: 284 XXXXXXXVQTNCF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342
+ ++ + R PV+VF+FS+ C+ A + L+ + E +
Sbjct: 349 THQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH 408
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
+ L DR+LPQ+ ++ LL RG+G+HH G+ P
Sbjct: 409 LFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILP 448
>UNIPROTKB|F1LP39 [details] [associations]
symbol:Skiv2l "Protein Skiv2l" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 RGD:1303059 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
OMA:TRLDETC GeneTree:ENSGT00690000102154 IPI:IPI00417365
Ensembl:ENSRNOT00000000481 Uniprot:F1LP39
Length = 1206
Score = 711 (255.3 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 147/340 (43%), Positives = 204/340 (60%)
Query: 49 KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108
+PA ++ F D FQK+AIL +E + SV V+AHTSAGKTVVAEYAIA + K R IYT+P
Sbjct: 261 QPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP 320
Query: 109 IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168
IKALSNQK+R+F F DVGL+TGDV ++P +SCLIMTTEILR+MLY GS++ R++ WVI
Sbjct: 321 IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI 380
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
FDE+HY+ D ERG VWEE LI+L ++V + LSAT+PNA +FA W+ L + +V+ T
Sbjct: 381 FDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV 440
Query: 229 YRPTPLQHYLF----PNGGDGIHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXX 283
RP PL+HYLF P + L++D F Y A+
Sbjct: 441 ARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 500
Query: 284 XXXXXXXVQTNCF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342
+ ++ + R PV+VF+FS+ C+ A + L+ + E +
Sbjct: 501 THQGGPAQDRGVYLALLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH 560
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
+ L DR+LPQ+ ++ LLRRG+G+HH G+ P
Sbjct: 561 LFLQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILP 600
>UNIPROTKB|B4DM01 [details] [associations]
symbol:SKIV2L "cDNA FLJ57529, highly similar to Helicase
SKI2W (EC 3.6.1.-)" species:9606 "Homo sapiens" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL662849 eggNOG:COG4581
InterPro:IPR025696 Pfam:PF13234 UniGene:Hs.89864 HGNC:HGNC:10898
HOVERGEN:HBG060025 OrthoDB:EOG47H5P5 ChiTaRS:SKIV2L EMBL:AK297230
IPI:IPI01014021 SMR:B4DM01 STRING:B4DM01 Ensembl:ENST00000551164
Uniprot:B4DM01
Length = 1088
Score = 708 (254.3 bits), Expect = 2.7e-69, P = 2.7e-69
Identities = 147/340 (43%), Positives = 203/340 (59%)
Query: 49 KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108
+PA ++ F D FQK+AIL +E + SV V+AHTSAGKTVVAEYAIA + K R IYT+P
Sbjct: 144 QPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP 203
Query: 109 IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168
IKALSNQK+R+F F DVGL+TGDV ++P +SCLIMTTEILR+MLY GS++ R++ WVI
Sbjct: 204 IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI 263
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
FDE+HY+ D ERG VWEE LI+L D+V + LSAT+PNA +FA W+ L + +V+ T
Sbjct: 264 FDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV 323
Query: 229 YRPTPLQHYLFPNGGD---G-IHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXX 283
RP PL+HYLF G + L++D F Y A+
Sbjct: 324 TRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 383
Query: 284 XXXXXXXVQTNCF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342
+ ++ + R PV+VF+FS+ C+ A + L+ + E +
Sbjct: 384 THQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH 443
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
+ L DR+LPQ+ ++ LL RG+G+HH G+ P
Sbjct: 444 LFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILP 483
>UNIPROTKB|F8VNU1 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL844853 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI01022196
SMR:F8VNU1 Ensembl:ENST00000546742 Ensembl:ENST00000547054
Ensembl:ENST00000550012 Ensembl:ENST00000550640 UCSC:uc011ghk.1
Uniprot:F8VNU1
Length = 1088
Score = 708 (254.3 bits), Expect = 2.7e-69, P = 2.7e-69
Identities = 147/340 (43%), Positives = 203/340 (59%)
Query: 49 KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108
+PA ++ F D FQK+AIL +E + SV V+AHTSAGKTVVAEYAIA + K R IYT+P
Sbjct: 144 QPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP 203
Query: 109 IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168
IKALSNQK+R+F F DVGL+TGDV ++P +SCLIMTTEILR+MLY GS++ R++ WVI
Sbjct: 204 IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI 263
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
FDE+HY+ D ERG VWEE LI+L D+V + LSAT+PNA +FA W+ L + +V+ T
Sbjct: 264 FDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV 323
Query: 229 YRPTPLQHYLFPNGGD---G-IHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXX 283
RP PL+HYLF G + L++D F Y A+
Sbjct: 324 TRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 383
Query: 284 XXXXXXXVQTNCF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342
+ ++ + R PV+VF+FS+ C+ A + L+ + E +
Sbjct: 384 THQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH 443
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
+ L DR+LPQ+ ++ LL RG+G+HH G+ P
Sbjct: 444 LFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILP 483
>RGD|1303059 [details] [associations]
symbol:Skiv2l "superkiller viralicidic activity 2-like (S.
cerevisiae )" species:10116 "Rattus norvegicus" [GO:0055087 "Ski
complex" evidence=ISO] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
RGD:1303059 GO:GO:0005524 GO:GO:0003676 EMBL:BX883045
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 HOGENOM:HOG000163048
KO:K12599 CTD:6499 HOVERGEN:HBG060025 OrthoDB:EOG47H5P5
IPI:IPI00417365 RefSeq:NP_998724.1 UniGene:Rn.138027
ProteinModelPortal:Q6MG76 IntAct:Q6MG76 PhosphoSite:Q6MG76
PRIDE:Q6MG76 GeneID:294260 KEGG:rno:294260 UCSC:RGD:1303059
InParanoid:Q6MG76 NextBio:637849 ArrayExpress:Q6MG76
Genevestigator:Q6MG76 Uniprot:Q6MG76
Length = 1241
Score = 711 (255.3 bits), Expect = 2.8e-69, P = 2.8e-69
Identities = 147/340 (43%), Positives = 204/340 (60%)
Query: 49 KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108
+PA ++ F D FQK+AIL +E + SV V+AHTSAGKTVVAEYAIA + K R IYT+P
Sbjct: 296 QPAFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP 355
Query: 109 IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168
IKALSNQK+R+F F DVGL+TGDV ++P +SCLIMTTEILR+MLY GS++ R++ WVI
Sbjct: 356 IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI 415
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
FDE+HY+ D ERG VWEE LI+L ++V + LSAT+PNA +FA W+ L + +V+ T
Sbjct: 416 FDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV 475
Query: 229 YRPTPLQHYLF----PNGGDGIHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXX 283
RP PL+HYLF P + L++D F Y A+
Sbjct: 476 ARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 535
Query: 284 XXXXXXXVQTNCF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342
+ ++ + R PV+VF+FS+ C+ A + L+ + E +
Sbjct: 536 THQGGPAQDRGVYLALLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH 595
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
+ L DR+LPQ+ ++ LLRRG+G+HH G+ P
Sbjct: 596 LFLQRCLARLRGSDRQLPQVLHMSELLRRGLGVHHSGILP 635
>UNIPROTKB|E1BMS0 [details] [associations]
symbol:LOC100139548 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0055087 "Ski complex" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 OMA:TRLDETC GeneTree:ENSGT00690000102154
EMBL:DAAA02055371 IPI:IPI00690289 RefSeq:XP_003583920.1
RefSeq:XP_003587743.1 Ensembl:ENSBTAT00000007339 GeneID:100139548
KEGG:bta:100139548 Uniprot:E1BMS0
Length = 1246
Score = 711 (255.3 bits), Expect = 2.8e-69, P = 2.8e-69
Identities = 147/340 (43%), Positives = 203/340 (59%)
Query: 49 KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108
+PA ++ F D FQK+AIL +E + SV V+AHTSAGKTVVAEYAIA + K R IYT+P
Sbjct: 302 QPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP 361
Query: 109 IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168
IKALSNQK+R+F F DVGL+TGDV ++P +SCLIMTTEILR+MLY GS++ R++ WVI
Sbjct: 362 IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI 421
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
FDE+HY+ D ERG VWEE LI+L D+V + LSAT+PNA +FA W+ L + +V+ T
Sbjct: 422 FDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV 481
Query: 229 YRPTPLQHYLF----PNGGDGIHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXX 283
RP PL+HYLF P + L++D F Y A+
Sbjct: 482 ARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 541
Query: 284 XXXXXXXVQTNCF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342
+ ++ + R PV+VF+FS+ C+ A + L+ + E +
Sbjct: 542 THQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH 601
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
+ L DR+LPQ+ ++ LL RG+G+HH G+ P
Sbjct: 602 LFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILP 641
>UNIPROTKB|E2RSD6 [details] [associations]
symbol:SKIV2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0055087 "Ski complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 InterPro:IPR016438 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PIRSF:PIRSF005198 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696 Pfam:PF13234
GO:GO:0055087 KO:K12599 OMA:TRLDETC GeneTree:ENSGT00690000102154
CTD:6499 EMBL:AAEX03008222 RefSeq:XP_538841.2
ProteinModelPortal:E2RSD6 Ensembl:ENSCAFT00000001053 GeneID:481720
KEGG:cfa:481720 NextBio:20856463 Uniprot:E2RSD6
Length = 1246
Score = 711 (255.3 bits), Expect = 2.8e-69, P = 2.8e-69
Identities = 147/340 (43%), Positives = 203/340 (59%)
Query: 49 KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108
+PA ++ F D FQK+AIL +E + SV V+AHTSAGKTVVAEYAIA + K R IYT+P
Sbjct: 302 QPAFQWSFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP 361
Query: 109 IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168
IKALSNQK+R+F F DVGL+TGDV ++P +SCLIMTTEILR+MLY GS++ R++ WVI
Sbjct: 362 IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI 421
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
FDE+HY+ D ERG VWEE LI+L D+V + LSAT+PNA +FA W+ L + +V+ T
Sbjct: 422 FDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV 481
Query: 229 YRPTPLQHYLF----PNGGDGIHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXX 283
RP PL+HYLF P + L++D F Y A+
Sbjct: 482 ARPVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 541
Query: 284 XXXXXXXVQTNCF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342
+ ++ + R PV+VF+FS+ C+ A + L+ + E +
Sbjct: 542 THQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH 601
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
+ L DR+LPQ+ ++ LL RG+G+HH G+ P
Sbjct: 602 LFLQRCLARLRGSDRQLPQVLHMSELLHRGLGVHHSGILP 641
>UNIPROTKB|Q15477 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0055087 "Ski
complex" evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] Reactome:REACT_17015 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 EMBL:AF019413 EMBL:AL662849 EMBL:AL645922
eggNOG:COG4581 InterPro:IPR025696 Pfam:PF13234 GO:GO:0055087
HOGENOM:HOG000163048 KO:K12599 OMA:TRLDETC EMBL:U09877 EMBL:X98378
EMBL:Z48796 IPI:IPI00414819 PIR:S56752 RefSeq:NP_008860.4
UniGene:Hs.89864 ProteinModelPortal:Q15477 SMR:Q15477 IntAct:Q15477
STRING:Q15477 PhosphoSite:Q15477 DMDM:3123284 PaxDb:Q15477
PRIDE:Q15477 DNASU:6499 Ensembl:ENST00000375394
Ensembl:ENST00000383336 Ensembl:ENST00000412823
Ensembl:ENST00000421789 Ensembl:ENST00000429465
Ensembl:ENST00000448219 GeneID:6499 KEGG:hsa:6499 UCSC:uc003nyn.1
CTD:6499 GeneCards:GC06P031926 H-InvDB:HIX0005742
H-InvDB:HIX0166115 H-InvDB:HIX0166390 H-InvDB:HIX0166908
H-InvDB:HIX0167165 H-InvDB:HIX0167404 HGNC:HGNC:10898 MIM:600478
MIM:614602 neXtProt:NX_Q15477 Orphanet:84064 PharmGKB:PA35798
HOVERGEN:HBG060025 InParanoid:Q15477 OrthoDB:EOG47H5P5
PhylomeDB:Q15477 ChiTaRS:SKIV2L GenomeRNAi:6499 NextBio:25263
ArrayExpress:Q15477 Bgee:Q15477 CleanEx:HS_SKIV2L
Genevestigator:Q15477 Uniprot:Q15477
Length = 1246
Score = 708 (254.3 bits), Expect = 6.0e-69, P = 6.0e-69
Identities = 147/340 (43%), Positives = 203/340 (59%)
Query: 49 KPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108
+PA ++ F D FQK+AIL +E + SV V+AHTSAGKTVVAEYAIA + K R IYT+P
Sbjct: 302 QPAFQWAFEPDVFQKQAILHLERHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSP 361
Query: 109 IKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVI 168
IKALSNQK+R+F F DVGL+TGDV ++P +SCLIMTTEILR+MLY GS++ R++ WVI
Sbjct: 362 IKALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVI 421
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD 228
FDE+HY+ D ERG VWEE LI+L D+V + LSAT+PNA +FA W+ L + +V+ T
Sbjct: 422 FDEVHYINDVERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTV 481
Query: 229 YRPTPLQHYLFPNGGD---G-IHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXX 283
RP PL+HYLF G + L++D F Y A+
Sbjct: 482 TRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 541
Query: 284 XXXXXXXVQTNCF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342
+ ++ + R PV+VF+FS+ C+ A + L+ + E +
Sbjct: 542 THQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH 601
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
+ L DR+LPQ+ ++ LL RG+G+HH G+ P
Sbjct: 602 LFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILP 641
>TAIR|locus:2075566 [details] [associations]
symbol:AT3G46960 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0005773
"vacuole" evidence=IDA] [GO:0006813 "potassium ion transport"
evidence=IMP] [GO:0035864 "response to potassium ion" evidence=IMP]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0031048
"chromatin silencing by small RNA" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 InterPro:IPR016438
Pfam:PF00270 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005773
EMBL:CP002686 GO:GO:0003676 GO:GO:0006813 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR025696
Pfam:PF13234 KO:K12599 OMA:TRLDETC IPI:IPI00544785
RefSeq:NP_190280.5 UniGene:At.28750 UniGene:At.48743
ProteinModelPortal:F4JAA5 SMR:F4JAA5 PRIDE:F4JAA5
EnsemblPlants:AT3G46960.1 GeneID:823849 KEGG:ath:AT3G46960
GO:GO:0035864 Uniprot:F4JAA5
Length = 1347
Score = 607 (218.7 bits), Expect = 1.6e-68, Sum P(2) = 1.6e-68
Identities = 114/192 (59%), Positives = 143/192 (74%)
Query: 51 AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIK 110
A E+PF LD FQKEAI C+E +SV V+AHTSAGKTVVAEYA A + K R +YT PIK
Sbjct: 354 AIEFPFELDNFQKEAICCLEKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIK 413
Query: 111 ALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFD 170
+SNQKYR+F +F DVGL+TGDV+I P +SCLIMTTEILR+MLYRG++I R++ WVIFD
Sbjct: 414 TISNQKYRDFCGKF-DVGLLTGDVSIRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFD 472
Query: 171 EIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR 230
E+HY+ D ERG VWEE +I+L ++ FV LSAT+PN +FA W+ + V T R
Sbjct: 473 EVHYVNDVERGVVWEEVIIMLPRHINFVLLSATVPNTFEFADWIGRTKQKEIRVTGTTKR 532
Query: 231 PTPLQHYLFPNG 242
P PL+H LF +G
Sbjct: 533 PVPLEHCLFYSG 544
Score = 129 (50.5 bits), Expect = 1.6e-68, Sum P(2) = 1.6e-68
Identities = 29/90 (32%), Positives = 45/90 (50%)
Query: 293 TNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVL 352
+N ++ + + +L PV+VF FSK C+ A + + + E + A L
Sbjct: 635 SNWLLLINKLSKMSLLPVVVFCFSKNYCDRCADALTGTDLTSSSEKSEIRVFCDKAFSRL 694
Query: 353 SEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
DR LPQ+ + LL RGIG+HH G+ P
Sbjct: 695 KGSDRNLPQVLRLQSLLHRGIGVHHAGLLP 724
Score = 56 (24.8 bits), Expect = 7.9e-61, Sum P(2) = 7.9e-61
Identities = 18/74 (24%), Positives = 38/74 (51%)
Query: 304 ERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIE 363
E +L VIV S ++ + + + L+ EE+K V+D+ + + +KLP+ +
Sbjct: 809 ESDLRRVIVGSATRLESQFRLTYIMILHLLRVEELK-VEDMLKRSFAEFHAQ-KKLPEKQ 866
Query: 364 NILPLLRRGIGIHH 377
+L +++R + H
Sbjct: 867 QLL-MIKRSLPTKH 879
>UNIPROTKB|Q10701 [details] [associations]
symbol:helY "Probable helicase HelY" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271 Pfam:PF08148
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005886
GO:GO:0005524 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842578 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:G70767 RefSeq:NP_216608.1 RefSeq:NP_336620.1
RefSeq:YP_006515507.1 ProteinModelPortal:Q10701 SMR:Q10701
PRIDE:Q10701 EnsemblBacteria:EBMYCT00000003887
EnsemblBacteria:EBMYCT00000069683 GeneID:13316898 GeneID:887736
GeneID:924573 KEGG:mtc:MT2153 KEGG:mtu:Rv2092c KEGG:mtv:RVBD_2092c
PATRIC:18126496 TubercuList:Rv2092c HOGENOM:HOG000245391 KO:K03727
OMA:ANESAWQ ProtClustDB:CLSK791623 Uniprot:Q10701
Length = 906
Score = 428 (155.7 bits), Expect = 1.4e-43, Sum P(2) = 1.4e-43
Identities = 85/189 (44%), Positives = 124/189 (65%)
Query: 53 EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKAL 112
E PF LD FQ+ A +E VLV A T AGKTVV E+A+ +L + YTTP+KAL
Sbjct: 13 ELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPLKAL 72
Query: 113 SNQKYREFEEQF-KD-VGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFD 170
SNQK+ + ++ +D +GL+TGD+++N ++ ++MTTE+LRNMLY S + + +V+ D
Sbjct: 73 SNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYVVMD 132
Query: 171 EIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYR 230
E+H++ D+ RG VWEE ++ L D+VR V LSAT+ NA +F W+ + VV ++R
Sbjct: 133 EVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTT-VVVDEHR 191
Query: 231 PTPL-QHYL 238
P PL QH L
Sbjct: 192 PVPLWQHVL 200
Score = 67 (28.6 bits), Expect = 1.4e-43, Sum P(2) = 1.4e-43
Identities = 24/87 (27%), Positives = 36/87 (41%)
Query: 298 IVKMIMERNLAPVIVFSFSKKDCEIYAMQMAK--LNFNETEEVKLVDDVFSNAMDVLSEE 355
I K+ E L P I F FS+ C+ Q + L EE + +V + L++
Sbjct: 264 IAKLDAE-GLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADS 322
Query: 356 DRKLPQIENILPLLRRGIGIHH-GVKP 381
D + L RG+ HH G+ P
Sbjct: 323 DLAVLGYYEWREGLLRGLAAHHAGMLP 349
>TAIR|locus:2020573 [details] [associations]
symbol:EMB25 "EMBRYO DEFECTIVE 25" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=IMP] [GO:0010497 "plasmodesmata-mediated intercellular
transport" evidence=NAS;IMP] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0016441 "posttranscriptional gene silencing"
evidence=IMP] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0016556 "mRNA modification" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012961 Pfam:PF00270 Pfam:PF00271
Pfam:PF08148 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009570 GO:GO:0003676
GO:GO:0009793 GO:GO:0031047 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0008026 EMBL:AC002062
GO:GO:0003724 GO:GO:0010497 eggNOG:COG4581 GO:GO:0016441
HOGENOM:HOG000245391 EMBL:AK316759 EMBL:AF387007 IPI:IPI00538730
PIR:D96723 RefSeq:NP_177164.1 UniGene:At.35348
ProteinModelPortal:B9DFG3 SMR:B9DFG3 PaxDb:B9DFG3 PRIDE:B9DFG3
EnsemblPlants:AT1G70070.1 GeneID:843343 KEGG:ath:AT1G70070
GeneFarm:2280 TAIR:At1g70070 InParanoid:Q94EZ6 OMA:PSYGMVL
PhylomeDB:B9DFG3 ProtClustDB:CLSN2682754 Genevestigator:B9DFG3
Uniprot:B9DFG3
Length = 1171
Score = 410 (149.4 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 94/222 (42%), Positives = 132/222 (59%)
Query: 54 YPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALS 113
Y F +D FQ+ AI SV+VSA TS+GKT++AE A S++ + +R+ YTTP+KALS
Sbjct: 151 YDFRIDKFQRLAIEAFLRGSSVVVSAPTSSGKTLIAEAAAVSTVAKGRRLFYTTPLKALS 210
Query: 114 NQKYREFEEQFKD--VGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITRE------VG 165
NQK+REF E F D VGL+TGD IN + +IMTTEILRNMLY+ + V
Sbjct: 211 NQKFREFRETFGDDNVGLLTGDSAINKDAQIVIMTTEILRNMLYQSVGMASSGTGLFHVD 270
Query: 166 WVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVV 225
++ DE+HY+ D RG VWEE +I V+ + LSAT+ N + A W+ +H + +V
Sbjct: 271 AIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGEIHGKT-ELV 329
Query: 226 YTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVL 267
+ RP PL Y F + L+ D K N ++++N L
Sbjct: 330 TSTRRPVPLTWY-FSTKHSLLPLL--DEKGINVNRKLSLNYL 368
Score = 72 (30.4 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 305 RNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKL-PQI- 362
+N+ P I F F+++ C+ A+Q + NF +L+DD + +++ ++ R L P
Sbjct: 435 KNMLPAIWFIFNRRGCDA-AVQYVE-NF------QLLDDCEKSEVELALKKFRVLYPDAV 486
Query: 363 -ENILPLLRRGIGIHH-GVKPYGLWQS 387
E+ L RGI HH G P LW+S
Sbjct: 487 RESAEKGLLRGIAAHHAGCLP--LWKS 511
>UNIPROTKB|F1P0I1 [details] [associations]
symbol:F1P0I1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:QDCTYAD GeneTree:ENSGT00690000102154 EMBL:AADN02016399
IPI:IPI00595626 Ensembl:ENSGALT00000015699 Uniprot:F1P0I1
Length = 1313
Score = 215 (80.7 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 58/191 (30%), Positives = 97/191 (50%)
Query: 38 LEYQPLAQSKEKP-AREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASS 96
++Y L + + P R F+ D +Q+E + ++NN+S ++ A TS+GKT + Y +
Sbjct: 722 MDYYLLREERNDPDPRVQHFIPDTWQRELLDAVDNNESAVIVAPTSSGKTYASYYCMEKV 781
Query: 97 LKQSQR--VIYTTPIKALSNQK----YREFEEQFKD----VGLITGDVTINPSSSCLIMT 146
LK S V+Y P KAL NQ Y F ++ D G+ T D + +S +++T
Sbjct: 782 LKMSDEGVVVYVAPTKALVNQVVGSVYSRFTKKLPDGLVVCGVFTRDYRHDVMNSQILVT 841
Query: 147 T-EILRNMLY--RGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSAT 203
+ L ++ R T+ + ++IFDEIH + + VWE L+ + F+ LSAT
Sbjct: 842 VPQCLEILMLSPRCQSWTKRIQYIIFDEIHCLGGEIGAEVWEHLLVTI--RCPFLALSAT 899
Query: 204 IPNASQFAQWV 214
I N +W+
Sbjct: 900 ISNPDHLTEWL 910
Score = 50 (22.7 bits), Expect = 8.7e-15, Sum P(2) = 8.7e-15
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 368 LLRRGIGIHHG 378
L RRGIG HHG
Sbjct: 1245 LARRGIGYHHG 1255
>POMBASE|SPAC694.02 [details] [associations]
symbol:SPAC694.02 "DEAD/DEAH box helicase" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC694.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 PIR:T50247 RefSeq:NP_594482.1
ProteinModelPortal:Q9P7T8 PRIDE:Q9P7T8 EnsemblFungi:SPAC694.02.1
GeneID:2543333 KEGG:spo:SPAC694.02 HOGENOM:HOG000194492 OMA:HTRDYRI
OrthoDB:EOG4S4SQ7 NextBio:20804349 Uniprot:Q9P7T8
Length = 1717
Score = 208 (78.3 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 62/193 (32%), Positives = 99/193 (51%)
Query: 50 PAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR--VIYTT 107
P F D +Q+E + ++ ++SV V A TS+GKT ++ YA+ L+ + VIY
Sbjct: 728 PDSRVAFDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVA 787
Query: 108 PIKALSNQK----YREFEEQFKDVG-----LITGDVTINPSSSCLIMTT--EILRNMLYR 156
P KAL NQ Y F + + G + T D IN ++C ++ T +L++ML +
Sbjct: 788 PTKALVNQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQSMLLQ 847
Query: 157 GSEITR---EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQW 213
+ ++ +IFDEIH + E G V EE L+LL+ V LSAT+ N +F W
Sbjct: 848 PALANAWCPKIRRIIFDEIHCIGQMEDGLV-EEQLLLLAP-CPIVALSATVGNPQEFQVW 905
Query: 214 VSHLHHQPCHVVY 226
+S L + ++
Sbjct: 906 LSALQRAHSYPIH 918
Score = 168 (64.2 bits), Expect = 8.8e-10, Sum P(3) = 8.8e-10
Identities = 52/158 (32%), Positives = 82/158 (51%)
Query: 103 VIYTTPIKALSNQK----YREFEEQFKDVG-----LITGDVTINPSSSCLIMTT--EILR 151
VIY P KAL NQ Y F + + G + T D IN ++C ++ T +L+
Sbjct: 783 VIYVAPTKALVNQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQ 842
Query: 152 NMLYRGSEITR---EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNAS 208
+ML + + ++ +IFDEIH + E G V EE L+LL+ V LSAT+ N
Sbjct: 843 SMLLQPALANAWCPKIRRIIFDEIHCIGQMEDGLV-EEQLLLLAP-CPIVALSATVGNPQ 900
Query: 209 QFAQWVSHL---HHQPCHVVYTDYRPTPLQHYLFPNGG 243
+F W+S L H P H++ ++R + L+ +++ GG
Sbjct: 901 EFQVWLSALQRAHSYPIHLIVHEHRYSDLRKFVY--GG 936
Score = 56 (24.8 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 291 VQTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYA 324
+ N ++K + + L P I F++ +++CE A
Sbjct: 1074 ISQNLLPMLKDLHSKELLPAICFNYDRQECEYLA 1107
Score = 43 (20.2 bits), Expect = 1.8e-14, Sum P(3) = 1.8e-14
Identities = 8/9 (88%), Positives = 8/9 (88%)
Query: 369 LRRGIGIHH 377
L RGIGIHH
Sbjct: 1221 LYRGIGIHH 1229
Score = 37 (18.1 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 240 PNGGDGIHLIVDDNKF 255
P D IH ++D+ KF
Sbjct: 1347 PFARDTIHALMDEPKF 1362
>UNIPROTKB|G4N3Z7 [details] [associations]
symbol:MGG_05900 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003583 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00278 SMART:SM00382 SMART:SM00490 GO:GO:0005524
EMBL:CM001233 GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 RefSeq:XP_003711726.1
ProteinModelPortal:G4N3Z7 EnsemblFungi:MGG_05900T0 GeneID:2684075
KEGG:mgr:MGG_05900 Uniprot:G4N3Z7
Length = 1508
Score = 199 (75.1 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 59/182 (32%), Positives = 97/182 (53%)
Query: 54 YPFVL-DPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ----RVIYTT 107
+PF L + Q ++ + + N +V+VSA T +GKT + E AI L Q+ +VIY
Sbjct: 249 FPFELFNAVQSKSFASVYKTNDNVVVSAPTGSGKTAIFELAICKLLSQNTDQNFKVIYVA 308
Query: 108 PIKALSNQKYREFEEQFKDVGL----ITGDVTINPSSSC----LIMTTEILRNMLYRGSE 159
P KAL +++ R++E +F+ + L +TGD S +I+TT + + R E
Sbjct: 309 PTKALCSERARDWESKFRHLNLTSAELTGDTFSTDMSRVRAAQIIVTTPEKLDSITRRWE 368
Query: 160 ITRE----VGWVIFDEIHYMRDKERGYVWEETLILLS---DNVRFVFLSATIPNASQFAQ 212
R+ V V+ DE+H+++D RG E + + N+R V LSAT+PN+ A+
Sbjct: 369 DYRKLLDLVQLVLIDEVHFLKDT-RGATLEVLICRMKTQVSNIRVVALSATVPNSEDVAK 427
Query: 213 WV 214
W+
Sbjct: 428 WL 429
Score = 65 (27.9 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 309 PVIVFSFSKKDCEIYAMQMAKLNFNETEEVK 339
P+IVF F++K CE+ A ++++L + ++ K
Sbjct: 490 PIIVFCFTRKSCELTAKKLSQLWISMADDKK 520
>WB|WBGene00016194 [details] [associations]
symbol:C28H8.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K01529 GO:GO:0008026 EMBL:FO080703
eggNOG:COG4581 GeneTree:ENSGT00690000102154 PIR:A88470
RefSeq:NP_498283.1 ProteinModelPortal:Q09475 SMR:Q09475
STRING:Q09475 PaxDb:Q09475 EnsemblMetazoa:C28H8.3.1
EnsemblMetazoa:C28H8.3.2 GeneID:175834 KEGG:cel:CELE_C28H8.3
UCSC:C28H8.3.1 CTD:175834 WormBase:C28H8.3 HOGENOM:HOG000018763
InParanoid:Q09475 OMA:YARFRNK NextBio:889866 Uniprot:Q09475
Length = 1714
Score = 205 (77.2 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 60/184 (32%), Positives = 96/184 (52%)
Query: 48 EKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR--VIY 105
+K R F D +Q++ + ++ S L+ A TSAGKT V+ Y I L+ S V+Y
Sbjct: 775 KKDDRVSGFAPDGWQRKMLDSVDRGNSALIIAPTSAGKTFVSYYCIEKVLRSSDNDVVVY 834
Query: 106 TTPIKALSNQK----YREFEEQFKDVGL-ITGDVTINPSSS---CLIMTT--EILRN-ML 154
P KAL NQ Y F + G+ + G +T S + C ++ T E L+ ML
Sbjct: 835 VAPSKALINQVCGSVYARFRNKSMKRGISLFGTLTQEYSQNAMQCQVLITVPECLQELML 894
Query: 155 YRGSEITREVG---WVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFA 211
R + + V +V+FDE+H + E ++WE+ L+L+ F+ LSATI NA++
Sbjct: 895 SRTPAVQKFVSHIKYVVFDEVHSIGASEESHIWEQLLLLIQ--CPFLALSATIGNANKLH 952
Query: 212 QWVS 215
+W++
Sbjct: 953 EWLN 956
Score = 56 (24.8 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 319 DCEIYAMQMAKLNFNETEEVKLVD------DVFSNAMDVLSEEDRKLPQIENILPLLRRG 372
+ ++ AM+ AKL E KL D+++ ++ + + + + +L L RG
Sbjct: 1223 EMDVLAMKKAKLA-RALERFKLRGRNGGDPDIYAKMVERMQKGAKTRESTQVLLKLFERG 1281
Query: 373 IGIHH 377
IG HH
Sbjct: 1282 IGYHH 1286
Score = 48 (22.0 bits), Expect = 4.1e-13, Sum P(2) = 4.1e-13
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 298 IVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD-DVFSNAMDVLSE 354
+V + E+ P I F+ + CE A+ +A N E E++ ++ D F N + E
Sbjct: 1134 LVDDLKEKGELPAICFNDDRHVCEKLAVTLA--NELERRELEYMETDEFKNKYMIKDE 1189
>RGD|1560014 [details] [associations]
symbol:Ddx60 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 60"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO] [GO:0003725
"double-stranded RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0051607 "defense
response to virus" evidence=ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=ISO]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1560014 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00690000102154 IPI:IPI00358301
Ensembl:ENSRNOT00000019667 Uniprot:F1M4N8
Length = 1304
Score = 200 (75.5 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 55/184 (29%), Positives = 96/184 (52%)
Query: 45 QSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR-- 102
+ K+ R F+ D +Q+E + ++N +S ++ A TS+GKT + Y + LK+S
Sbjct: 343 ERKDPDPRVQDFIPDTWQRELLDVVDNYESAVIVAPTSSGKTYASYYCMEKVLKESNEGV 402
Query: 103 VIYTTPIKALSNQKYREFEEQF-KDV-------GLITGDVTINPSSSCLIMTT----EIL 150
V+Y P KAL NQ + ++ K++ G+ T D +S +++T EIL
Sbjct: 403 VVYVAPTKALVNQVAATVQNRYTKNMPAGEVLCGVFTSDYHHEALNSQVLITMPACFEIL 462
Query: 151 RNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQF 210
+R + + R + +VIFDE+H + + R +WE L+++ F+ LSATI N
Sbjct: 463 LLAPHRQNWVKR-IRYVIFDEVHCIGGEIRAEIWEHLLVMI--RCPFLALSATISNPQHL 519
Query: 211 AQWV 214
+W+
Sbjct: 520 TEWL 523
Score = 58 (25.5 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 206 NASQFAQWVSHLH-HQPCHVVYTDYRPTPLQHYL 238
N + FA V+HLH H+P ++V+ + L H L
Sbjct: 1023 NPTGFAGLVTHLHYHEPSNLVFVSFLVKGLFHKL 1056
Score = 45 (20.9 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 363 ENILPLLRRGIGIHH 377
+ + L RRGIG HH
Sbjct: 843 DTLKKLARRGIGYHH 857
>UNIPROTKB|J9P0M0 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00690000102154 EMBL:AAEX03010133 EMBL:AAEX03010134
EMBL:AAEX03010135 Ensembl:ENSCAFT00000044956 Uniprot:J9P0M0
Length = 1708
Score = 202 (76.2 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 57/185 (30%), Positives = 95/185 (51%)
Query: 45 QSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR-- 102
+ K+ R F+ D +Q+E + ++NN+S ++ A TS+GKT + Y + LK+S
Sbjct: 747 ERKDPDPRVQNFIPDTWQRELLDVVDNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGV 806
Query: 103 VIYTTPIKALSNQKYREFEEQF-KDV-------GLITGDVTINPSSSCLIMTT-----EI 149
V+Y P KAL NQ +F K + G+ T D + + +C ++ T EI
Sbjct: 807 VVYVAPTKALVNQVAATVHNRFTKSLPNGEALCGVFTRDYR-HDALNCQVLITVPACFEI 865
Query: 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQ 209
L +R + + R + +VIFDE+H + + VWE L+++ F+ LSATI N
Sbjct: 866 LLLSPHRQAWVKR-IRYVIFDEVHCLGGEIGAEVWEHLLVMI--RCPFLALSATISNPEH 922
Query: 210 FAQWV 214
+W+
Sbjct: 923 LTEWL 927
Score = 55 (24.4 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 210 FAQWVSHLH-HQPCHVVYTDYRPTPLQHYL 238
FA VSHLH H+P + V+ + L H L
Sbjct: 1431 FAGLVSHLHYHEPSNFVFVSFLRKGLFHNL 1460
Score = 44 (20.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 368 LLRRGIGIHH 377
L RRGIG HH
Sbjct: 1252 LARRGIGYHH 1261
>UNIPROTKB|E2QSY2 [details] [associations]
symbol:DDX60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003727
GO:GO:0051607 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 OMA:QDCTYAD
GO:GO:1900245 GO:GO:1900246 GeneTree:ENSGT00690000102154
EMBL:AAEX03010133 EMBL:AAEX03010134 EMBL:AAEX03010135
Ensembl:ENSCAFT00000014321 Uniprot:E2QSY2
Length = 1711
Score = 202 (76.2 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 57/185 (30%), Positives = 95/185 (51%)
Query: 45 QSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR-- 102
+ K+ R F+ D +Q+E + ++NN+S ++ A TS+GKT + Y + LK+S
Sbjct: 750 ERKDPDPRVQNFIPDTWQRELLDVVDNNESAVIVAPTSSGKTYASYYCMEKVLKESNEGV 809
Query: 103 VIYTTPIKALSNQKYREFEEQF-KDV-------GLITGDVTINPSSSCLIMTT-----EI 149
V+Y P KAL NQ +F K + G+ T D + + +C ++ T EI
Sbjct: 810 VVYVAPTKALVNQVAATVHNRFTKSLPNGEALCGVFTRDYR-HDALNCQVLITVPACFEI 868
Query: 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQ 209
L +R + + R + +VIFDE+H + + VWE L+++ F+ LSATI N
Sbjct: 869 LLLSPHRQAWVKR-IRYVIFDEVHCLGGEIGAEVWEHLLVMI--RCPFLALSATISNPEH 925
Query: 210 FAQWV 214
+W+
Sbjct: 926 LTEWL 930
Score = 55 (24.4 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 210 FAQWVSHLH-HQPCHVVYTDYRPTPLQHYL 238
FA VSHLH H+P + V+ + L H L
Sbjct: 1434 FAGLVSHLHYHEPSNFVFVSFLRKGLFHNL 1463
Score = 44 (20.5 bits), Expect = 2.4e-12, Sum P(2) = 2.4e-12
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 368 LLRRGIGIHH 377
L RRGIG HH
Sbjct: 1255 LARRGIGYHH 1264
>UNIPROTKB|Q8IY21 [details] [associations]
symbol:DDX60 "Probable ATP-dependent RNA helicase DDX60"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0009615 "response to
virus" evidence=IDA] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:1900245 "positive regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AC068989 EMBL:BC007820
EMBL:BC038115 EMBL:AK001649 IPI:IPI00217606 RefSeq:NP_060101.3
UniGene:Hs.591710 ProteinModelPortal:Q8IY21 SMR:Q8IY21
IntAct:Q8IY21 STRING:Q8IY21 PhosphoSite:Q8IY21 DMDM:296439377
PaxDb:Q8IY21 PRIDE:Q8IY21 Ensembl:ENST00000393743 GeneID:55601
KEGG:hsa:55601 UCSC:uc003irp.3 CTD:55601 GeneCards:GC04M169137
HGNC:HGNC:25942 HPA:HPA046952 MIM:613974 neXtProt:NX_Q8IY21
PharmGKB:PA162383444 eggNOG:COG4581 HOGENOM:HOG000169263
HOVERGEN:HBG107797 InParanoid:Q8IY21 OMA:QDCTYAD OrthoDB:EOG4XSKP0
PhylomeDB:Q8IY21 GenomeRNAi:55601 NextBio:60142 ArrayExpress:Q8IY21
Bgee:Q8IY21 CleanEx:HS_DDX60 Genevestigator:Q8IY21 GO:GO:1900245
GO:GO:1900246 Uniprot:Q8IY21
Length = 1712
Score = 192 (72.6 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 53/185 (28%), Positives = 95/185 (51%)
Query: 45 QSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR-- 102
+ K+ R F+ D +Q+E + ++ N+S ++ A TS+GKT + Y + LK+S
Sbjct: 751 ERKDPDPRVQDFIPDTWQRELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLKESDDGV 810
Query: 103 VIYTTPIKALSNQKYREFEEQFKDVGLITGDVTI--------NPSSSCLIMTT-----EI 149
V+Y P KAL NQ + +F L +G+V + + +C ++ T EI
Sbjct: 811 VVYVAPTKALVNQVAATVQNRFTK-NLPSGEVLCGVFTREYRHDALNCQVLITVPACFEI 869
Query: 150 LRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQ 209
L +R + + +++ +VIFDE+H + + +WE L+++ F+ LSATI N
Sbjct: 870 LLLAPHRQNWV-KKIRYVIFDEVHCLGGEIGAEIWEHLLVMI--RCPFLALSATISNPEH 926
Query: 210 FAQWV 214
+W+
Sbjct: 927 LTEWL 931
Score = 59 (25.8 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 206 NASQFAQWVSHLH-HQPCHVVYTDYRPTPLQHYL 238
N FA VSHLH H+P ++V+ + L H L
Sbjct: 1431 NPMGFAGLVSHLHYHEPSNLVFVSFLVNGLFHDL 1464
Score = 44 (20.5 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 363 ENILPLLRRGIGIHHGVKPY 382
E + L RGIG HH +
Sbjct: 1251 EELKALAERGIGYHHSAMSF 1270
>UNIPROTKB|Q5H9U9 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG4581 HOGENOM:HOG000169263 HOVERGEN:HBG107797
EMBL:AL832950 EMBL:CR933601 EMBL:AC079926 EMBL:AC093888
EMBL:AK055595 IPI:IPI00853133 IPI:IPI00935252 RefSeq:NP_001012985.1
UniGene:Hs.535011 ProteinModelPortal:Q5H9U9 STRING:Q5H9U9
PhosphoSite:Q5H9U9 DMDM:74755482 PaxDb:Q5H9U9 PRIDE:Q5H9U9
Ensembl:ENST00000260184 Ensembl:ENST00000505890
Ensembl:ENST00000511577 GeneID:91351 KEGG:hsa:91351 UCSC:uc003irq.4
CTD:91351 GeneCards:GC04M169277 HGNC:HGNC:26429 HPA:HPA043211
neXtProt:NX_Q5H9U9 PharmGKB:PA162383445 InParanoid:Q5H9U9
OMA:AQDSVYL GenomeRNAi:91351 NextBio:77184 ArrayExpress:Q5H9U9
Bgee:Q5H9U9 CleanEx:HS_DDX60L Genevestigator:Q5H9U9 Uniprot:Q5H9U9
Length = 1706
Score = 179 (68.1 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 52/184 (28%), Positives = 91/184 (49%)
Query: 45 QSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR-- 102
+ K++ R F+ + +Q+E + ++ N+S ++ A TS+GKT + Y + L++S
Sbjct: 731 ERKDRDPRVQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGV 790
Query: 103 VIYTTPIKALSNQKYREFEEQFKDV--------GLITGDVTINPSSSCLIMTT----EIL 150
V+Y P K+L Q E +F G T D N + +++T EIL
Sbjct: 791 VVYVAPAKSLVGQVAATVENRFTKTLPAGRTLCGAFTRDYCHNVLNCQVLITVPECFEIL 850
Query: 151 RNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQF 210
+R + R + +VIFDE+HY+ + WE L+++ F+ LSATI N +
Sbjct: 851 LLAPHRQKWVER-IRYVIFDEVHYLGREVGAKFWELLLVII--RCPFLVLSATINNPNLL 907
Query: 211 AQWV 214
+W+
Sbjct: 908 TKWL 911
Score = 55 (24.4 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 206 NASQFAQWVSHLH-HQPCHVVYTDYRPTPLQHYL 238
N +FA S+LH H+P ++V+ ++ L H L
Sbjct: 1415 NPKKFAGLASYLHGHEPSNLVFVNFLKRGLFHNL 1448
Score = 41 (19.5 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 356 DRKLPQI------ENILPLLRRGIGIHH 377
+R LP++ + + L +RGIG HH
Sbjct: 1222 ERVLPRVRFTRHGKELKALAQRGIGYHH 1249
>WB|WBGene00013189 [details] [associations]
symbol:Y54E2A.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AL032646 RefSeq:NP_497060.2
ProteinModelPortal:Q9XWI1 SMR:Q9XWI1 PaxDb:Q9XWI1
EnsemblMetazoa:Y54E2A.4 GeneID:190256 KEGG:cel:CELE_Y54E2A.4
UCSC:Y54E2A.4 CTD:190256 WormBase:Y54E2A.4 Uniprot:Q9XWI1
Length = 2017
Score = 172 (65.6 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 54/167 (32%), Positives = 89/167 (53%)
Query: 37 DLEYQPLAQSKEKPARE-YPF-VLDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAI 93
DLE P+ K Y F +P Q + C+ + ++S L+ A T +GKT+ AE A+
Sbjct: 1157 DLEPLPIKTLKNSKFEAIYNFDYFNPIQAQVFFCLYKTDKSALIGAPTGSGKTLCAELAM 1216
Query: 94 ASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKD-VGL----ITGDVTINP----SSSC 142
L+ +V+Y P+K+L ++ +++++F+D +G ++GDVT +P +SS
Sbjct: 1217 FRLLQDHPGMKVVYIAPLKSLVRERVDDWKKKFEDGMGYRVVEVSGDVTPDPEELAASSI 1276
Query: 143 LIMTTE----ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185
LI T E I R+ R E R VG ++ DE+H + +RG V E
Sbjct: 1277 LITTPEKWDGISRSWATR--EYVRRVGLIVLDEVHLL-GVDRGAVLE 1320
Score = 55 (24.4 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 309 PVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLP-QIENILP 367
PV++F S++ + A+ L + + ++ MD+L ED + EN+
Sbjct: 1413 PVLIFVSSRRQTRLTALAFVNLLIADHNPKQWLN------MDMLELEDLMAAIKDENLKL 1466
Query: 368 LLRRGIGIHH 377
L GIG+HH
Sbjct: 1467 TLPFGIGMHH 1476
>CGD|CAL0001532 [details] [associations]
symbol:orf19.3098 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000388 "spliceosome conformational change to
release U4 (or U4atac) and U1 (or U11)" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001532 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 KO:K12854 GO:GO:0008026 EMBL:AACQ01000086
EMBL:AACQ01000085 RefSeq:XP_715407.1 RefSeq:XP_715477.1
ProteinModelPortal:Q5A0Z8 STRING:Q5A0Z8 GeneID:3642881
GeneID:3642903 KEGG:cal:CaO19.10610 KEGG:cal:CaO19.3098
Uniprot:Q5A0Z8
Length = 1987
Score = 166 (63.5 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 61/194 (31%), Positives = 100/194 (51%)
Query: 70 ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ----------RVIYTTPIKALSNQKYRE 119
E + ++L+ A T AGKT VA I +++ + +++Y P+KAL ++ RE
Sbjct: 387 ETDNNLLICAPTGAGKTNVAMLTILRTIENFRNNGHIQLKNFKIVYIAPLKALVQEQMRE 446
Query: 120 FEEQFKDV-GLITGDVTINPS-SSCLIMTTEILRNMLYRGSEITRE-------VGWVIFD 170
F+ + V G++ ++T + S S I T+I+ + ITR+ V +I D
Sbjct: 447 FQRRLTSVYGVVVNELTGDSSLSKQQIAETQIIVTTPEKWDIITRKDPSYVKLVKLMIID 506
Query: 171 EIHYMRDKERGYVWEETL---ILLSD----NVRFVFLSATIPNASQFAQWVSHLHHQPCH 223
EIH + D ERG V E + I S+ ++R V LSAT+PN + A+++ +P
Sbjct: 507 EIHLLHD-ERGPVLESLVSRAIRKSETTGSDIRIVGLSATLPNYADVAKFI---RAKPEG 562
Query: 224 VVYTD--YRPTPLQ 235
+ Y D YRP PL+
Sbjct: 563 LFYFDASYRPCPLE 576
Score = 59 (25.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 21/87 (24%), Positives = 44/87 (50%)
Query: 295 CF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQ-MAKLNFNETEEVKLVDDVFSNAMDVL 352
C+ ++ + + +R+ +I+F S+K+ A M KL+ + E+ ++L
Sbjct: 598 CYDRMHQSLQDRH--QLIIFVHSRKETFTTAKYLMEKLDIDIVEQ--------EGVKEIL 647
Query: 353 SEEDRKL--PQIENILPLLRRGIGIHH 377
+E + P+++ ++P RG GIHH
Sbjct: 648 KQEGESMSNPKLKEVIP---RGFGIHH 671
>ZFIN|ZDB-GENE-061207-43 [details] [associations]
symbol:hfm1 "HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-061207-43 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 EMBL:BX927353 EMBL:CABZ01046504
IPI:IPI00897259 ProteinModelPortal:F1QWJ0
Ensembl:ENSDART00000099851 Bgee:F1QWJ0 Uniprot:F1QWJ0
Length = 1049
Score = 140 (54.3 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 45/152 (29%), Positives = 80/152 (52%)
Query: 52 REYPFVLDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ------RVI 104
+++P+ + Q +A+ + +N++ + A T +GKTV+ E AI L ++ R +
Sbjct: 7 KDFPY-FNYVQSQALDDVLYSNKNFVACAPTGSGKTVLFELAIVRLLIEASEPWHNVRAV 65
Query: 105 YTTPIKALSNQKYREFEEQFKDVGL----ITGDVTINP----SSSCLIMTT-EILRNMLY 155
Y PIKAL +Q+Y ++++F +GL +TGD I+ + LI TT E +M
Sbjct: 66 YMAPIKALCSQQYDNWKQKFGPLGLKCKELTGDTEIDDFFEIQDAHLIFTTAEKWDSMTR 125
Query: 156 RGSE--ITREVGWVIFDEIHYMRDKERGYVWE 185
R + + + + DE+H ++DK RG E
Sbjct: 126 RWKDNCLLTSIRLFLVDEVHVVKDKTRGATLE 157
Score = 83 (34.3 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 35/121 (28%), Positives = 56/121 (46%)
Query: 168 IFDEIHYMRDKERGYVWEETLILLSD--------------NVRFVFLSATIPNASQFAQW 213
+ DE+H ++DK RG E + + +VRFV +SATIPN ++W
Sbjct: 140 LVDEVHVVKDKTRGATLEVVVSRMKTMHFYRQAINPESKASVRFVAVSATIPNIQDVSEW 199
Query: 214 VSHLHHQPCHVVYTD--YRPTPLQHYL--FPNGGDGIHLIVDDNKFK---EHNYQVAMNV 266
+S P + D +RP L+ + FP G + N+FK NY++A N+
Sbjct: 200 LSD-ESGPATCLEMDESHRPVKLRKVVLGFPCGSN-------QNEFKFDLSLNYKLA-NI 250
Query: 267 L 267
+
Sbjct: 251 I 251
Score = 37 (18.1 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 297 KIVKMIMERNLAPVIV--FSFSKKDCEIYAMQ-MAKLNFNETEEVKLVDDVFS 346
K +KM+M A V + FS+ KD A + + + + + ++++ +FS
Sbjct: 928 KRLKMMMNNGTAAVSMQQFSYKPKDTHSAAKRYLPNSIYVKGHKTEMLNIIFS 980
>DICTYBASE|DDB_G0290389 [details] [associations]
symbol:ascc3 "activating signal cointegrator 1
complex subunit" species:44689 "Dictyostelium discoideum"
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 dictyBase:DDB_G0290389 GO:GO:0005524
GO:GO:0006355 GO:GO:0006351 GenomeReviews:CM000154_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AAFI02000163 RefSeq:XP_635715.1
ProteinModelPortal:Q54G57 EnsemblProtists:DDB0233132 GeneID:8627633
KEGG:ddi:DDB_G0290389 InParanoid:Q54G57 KO:K15271
ProtClustDB:CLSZ2429672 Uniprot:Q54G57
Length = 2195
Score = 183 (69.5 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 63/213 (29%), Positives = 112/213 (52%)
Query: 70 ENNQSVLVSAHTSAGKTVVAE----YAIASSL-------KQSQRVIYTTPIKALSNQKYR 118
++N+++L+SA T AGKT +A + I S++ K + ++IY P+KAL+++
Sbjct: 496 KSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKALASEMVE 555
Query: 119 EFEEQFKDVGLI----TGDVTINPSS---SCLIMTTEILRNMLYRGSE---ITREVGWVI 168
+F K +G++ TGD+ + + +I+TT +++ R S +T+ V +I
Sbjct: 556 KFSNSLKYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVALTKLVRLII 615
Query: 169 FDEIHYMRDKERGYVWE----ETLILLS---DNVRFVFLSATIPNASQFAQWVSHLHHQP 221
DEIH + + ERG V E TL + + +R V LSAT+PN A+++
Sbjct: 616 IDEIHLLHE-ERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI-RAPASG 673
Query: 222 CHVVYTDYRPTPL-QHYLFPNGGDGIHLIVDDN 253
H + YRP PL Q+++ GI +++ +N
Sbjct: 674 THFFDSSYRPVPLTQNFIGVKDNQGI-MVMKNN 705
Score = 39 (18.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 295 CF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLS 353
C+ ++ K + E + V++F S+KD ++ A++ + +E FSN
Sbjct: 710 CYERLEKSLKEGH--QVMIFVHSRKD----TVKSAEILSDMAKEKHFR---FSNEEPSFG 760
Query: 354 --EEDRKLPQIENILPLLRRGIGIHH 377
+E K+ E I L + GI +HH
Sbjct: 761 AKKEFEKVKSKE-IRSLFQHGISVHH 785
>GENEDB_PFALCIPARUM|PF14_0370 [details] [associations]
symbol:PF14_0370 "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 GO:GO:0004004 KO:K01509
RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 157 (60.3 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 43/143 (30%), Positives = 76/143 (53%)
Query: 59 DPFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQ 115
+P Q + ++++L+ A T +GKTV+ E I +L + Q+ +Y P+KA+ N+
Sbjct: 1372 NPIQTQMFHATFHTDENILLGAPTGSGKTVIGELCILRNLLRCEGQKSVYICPMKAIVNE 1431
Query: 116 KYREFEEQFK-----DVGLITGDVTINPS----SSCLIMTTE----ILRNMLYRGSEITR 162
+Y+ ++ +FK +V +TGD N S+ +I T E I RN ++ + +
Sbjct: 1432 RYKSWKSKFKSLFNKNVIELTGDKNENKENIAESNIIICTPEKLDVITRN--WKNKKFVK 1489
Query: 163 EVGWVIFDEIHYMRDKERGYVWE 185
+ +IFDEIH + + RG V E
Sbjct: 1490 NINLIIFDEIHLLGQENRGGVIE 1512
Score = 65 (27.9 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 319 DCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH 377
D EIY + FN + KL ++ N ++L + L + E++ +L+ GIGIHH
Sbjct: 1767 DNEIYDYNLL---FNNS---KLSEEERKNVANILFQNYLNLIENEHLKEILKYGIGIHH 1819
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 299 VKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF 332
+K NL V V SF+ +D M+ K NF
Sbjct: 2421 IKRFNNNNLKKVSVISFTLED-----MEKGKYNF 2449
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 299 VKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLS 353
+ ++ E+ + F + + E M+ NFNE ++ +V +N D+ +
Sbjct: 1901 ILLVQEKRKNAIKNFLYHPMNIESNIME----NFNEHINAEICSNVINNKEDIFN 1951
>UNIPROTKB|Q8IL78 [details] [associations]
symbol:PF14_0370 "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0004004
KO:K01509 RefSeq:XP_001348544.1 ProteinModelPortal:Q8IL78
EnsemblProtists:PF14_0370:mRNA GeneID:811952 KEGG:pfa:PF14_0370
EuPathDB:PlasmoDB:PF3D7_1439100 HOGENOM:HOG000282165 OMA:GVAIHHA
ProtClustDB:CLSZ2433245 Uniprot:Q8IL78
Length = 2472
Score = 157 (60.3 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 43/143 (30%), Positives = 76/143 (53%)
Query: 59 DPFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYAIASSLK--QSQRVIYTTPIKALSNQ 115
+P Q + ++++L+ A T +GKTV+ E I +L + Q+ +Y P+KA+ N+
Sbjct: 1372 NPIQTQMFHATFHTDENILLGAPTGSGKTVIGELCILRNLLRCEGQKSVYICPMKAIVNE 1431
Query: 116 KYREFEEQFK-----DVGLITGDVTINPS----SSCLIMTTE----ILRNMLYRGSEITR 162
+Y+ ++ +FK +V +TGD N S+ +I T E I RN ++ + +
Sbjct: 1432 RYKSWKSKFKSLFNKNVIELTGDKNENKENIAESNIIICTPEKLDVITRN--WKNKKFVK 1489
Query: 163 EVGWVIFDEIHYMRDKERGYVWE 185
+ +IFDEIH + + RG V E
Sbjct: 1490 NINLIIFDEIHLLGQENRGGVIE 1512
Score = 65 (27.9 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 319 DCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH 377
D EIY + FN + KL ++ N ++L + L + E++ +L+ GIGIHH
Sbjct: 1767 DNEIYDYNLL---FNNS---KLSEEERKNVANILFQNYLNLIENEHLKEILKYGIGIHH 1819
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 299 VKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNF 332
+K NL V V SF+ +D M+ K NF
Sbjct: 2421 IKRFNNNNLKKVSVISFTLED-----MEKGKYNF 2449
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 299 VKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLS 353
+ ++ E+ + F + + E M+ NFNE ++ +V +N D+ +
Sbjct: 1901 ILLVQEKRKNAIKNFLYHPMNIESNIME----NFNEHINAEICSNVINNKEDIFN 1951
>FB|FBgn0038344 [details] [associations]
symbol:CG5205 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0006200 GO:GO:0005682 GO:GO:0003676
GO:GO:0004386 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104562 KO:K01529 OMA:FPGKHYC
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0008026 GO:GO:0016779 FlyBase:FBgn0038344 RefSeq:NP_650472.2
UniGene:Dm.1213 ProteinModelPortal:Q9VF56 SMR:Q9VF56
EnsemblMetazoa:FBtr0083147 GeneID:41891 KEGG:dme:Dmel_CG5205
UCSC:CG5205-RA InParanoid:Q9VF56 PhylomeDB:Q9VF56 GenomeRNAi:41891
NextBio:826131 ArrayExpress:Q9VF56 Bgee:Q9VF56 Uniprot:Q9VF56
Length = 2183
Score = 164 (62.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 50/148 (33%), Positives = 83/148 (56%)
Query: 54 YPFV-LDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR--VIYTTPI 109
Y F +P Q + C+ + +VL+ A T +GKT+VAE AI +L Q+ + V+Y P+
Sbjct: 1332 YKFTHFNPIQTQIFHCLYHTDNNVLLGAPTGSGKTIVAEIAIFRALNQNPKCKVVYIAPL 1391
Query: 110 KALSNQKYREFEEQFK--DVGL----ITGDVTINPSS---SCLIMTTEILRNMLYRG--- 157
KAL ++ ++E++F+ +GL +TGDVT + + S LI+TT + + R
Sbjct: 1392 KALVKERIADWEQRFQRSSLGLKVVELTGDVTPDIQAIRESQLIVTTPEKWDGISRSWQT 1451
Query: 158 SEITREVGWVIFDEIHYMRDKERGYVWE 185
E + V ++ DEIH + + +RG V E
Sbjct: 1452 REYVQHVSLIVIDEIHLLGE-DRGPVIE 1478
Score = 50 (22.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 15/69 (21%), Positives = 34/69 (49%)
Query: 309 PVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPL 368
P IVF S++ + A+ + E+ + + + + ++++ + R+ +N+
Sbjct: 1568 PTIVFVSSRRQTRLTALDLITFVAGESNPKQFLH-IPEDEIELILQNIRE----QNLKFC 1622
Query: 369 LRRGIGIHH 377
L GIG+HH
Sbjct: 1623 LAFGIGLHH 1631
Score = 39 (18.8 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 173 HYMRDKERGYVWEETLILLSDNVRF 197
H++ D + G ++ L+ ++D+ F
Sbjct: 1840 HFLEDLQPGMNTKKVLLAIADSYEF 1864
>DICTYBASE|DDB_G0270042 [details] [associations]
symbol:ascc3l "U5 small nuclear ribonucleoprotein 200
kDa helicase" species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 dictyBase:DDB_G0270042 GO:GO:0005524
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008380
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 KO:K12854 OMA:KWDVLSR GO:GO:0008026
RefSeq:XP_646493.1 ProteinModelPortal:Q55CI8 STRING:Q55CI8
EnsemblProtists:DDB0233131 GeneID:8617455 KEGG:ddi:DDB_G0270042
InParanoid:Q55CI8 ProtClustDB:CLSZ2431432 Uniprot:Q55CI8
Length = 2237
Score = 168 (64.2 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 67/214 (31%), Positives = 106/214 (49%)
Query: 58 LDPFQKEAILC-IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ------------RVI 104
L+ Q + C + + ++L+SA TS+GKT VA I + +++ +++
Sbjct: 552 LNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIV 611
Query: 105 YTTPIKALSNQKYREFEEQFKDVGLI----TGDVTINP---SSSCLIMTTEILRNMLYRG 157
Y P+K+L + F ++ K G++ TGD ++ S + +I+TT +++ R
Sbjct: 612 YIAPMKSLVQEMVGNFSKRLKSYGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITRK 671
Query: 158 S---EITREVGWVIFDEIHYMRDKERGYVWE----ETLILLSDN---VRFVFLSATIPNA 207
S T+ V +I DEIH + D ERG V E TL ++ VR V LSAT+PN
Sbjct: 672 SGDRAYTQLVKLIIIDEIHLLHD-ERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNY 730
Query: 208 SQFAQWVSHLHHQPCHVVYTD--YRPTPL-QHYL 238
A + L +P V Y D YRP PL Q Y+
Sbjct: 731 EDVATF---LRVEPDGVFYFDSSYRPIPLEQQYI 761
Score = 124 (48.7 bits), Expect = 0.00067, P = 0.00067
Identities = 46/161 (28%), Positives = 82/161 (50%)
Query: 36 PDLEYQPLA-QSKEKPAREYPF-----VLDPFQKEAILCI-ENNQSVLVSAHTSAGKTVV 88
P L+ QPL Q + P E F + + Q + C+ ++N + +SA T++GKTV
Sbjct: 1370 PLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAPTNSGKTVC 1429
Query: 89 AEYAIASSLKQSQR--VIYTTPIKALSNQKYREFEEQF---KDVGLI----TGD-VTINP 138
AE A+ KQ+ + V+Y P++ L++ + +++ +F GL+ TGD VT N
Sbjct: 1430 AEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKFGVKSPFGLVVSDLTGDAVTDNK 1489
Query: 139 --SSSCLIMTT----EILRNMLYRGSEITREVGWVIFDEIH 173
S +I+T +IL ++ + + + +I DE+H
Sbjct: 1490 ILDRSNIIVTNCEKWDILSRK-WKQRKALQSINLLIVDELH 1529
Score = 45 (20.9 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 361 QIEN--ILPLLRRGIGIHH 377
QI+N + LL GIGIHH
Sbjct: 838 QIQNAELKDLLPYGIGIHH 856
>RGD|1584010 [details] [associations]
symbol:Hfm1 "HFM1, ATP-dependent DNA helicase homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1584010 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00973 GO:GO:0008026
GeneTree:ENSGT00550000074822 IPI:IPI00766186
Ensembl:ENSRNOT00000033794 UCSC:RGD:1584010 Uniprot:F1LWY1
Length = 954
Score = 158 (60.7 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 52/175 (29%), Positives = 94/175 (53%)
Query: 52 REYPFVLDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS------QRVI 104
+E+P+ + Q +A + +++ ++ A T +GKTVV E AI L ++ +V+
Sbjct: 7 KEFPY-FNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEAPLPWLNMKVV 65
Query: 105 YTTPIKALSNQKYREFEEQFKDVGL----ITGDVTINP----SSSCLIMTT-EILRNML- 154
Y PIKAL +Q++ +++E+F +GL +TGD ++ + +IMTT E +M
Sbjct: 66 YMAPIKALCSQRFDDWKEKFGPIGLTCKELTGDTVMDDLFEIQHANIIMTTPEKWDSMTR 125
Query: 155 -YRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNAS 208
+R + + V + DE+H ++D+ RG E +++S LS T+ NAS
Sbjct: 126 KWRDNSFIQLVRLFLIDEVHVIKDENRGPTLE---VVVSRMKTVQSLSKTLENAS 177
>ASPGD|ASPL0000030426 [details] [associations]
symbol:AN5514 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=IEA] [GO:0007129
"synapsis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 EMBL:BN001305 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 eggNOG:COG1204 EMBL:AACD01000094 GO:GO:0008026
KO:K15271 OrthoDB:EOG4WWVSR RefSeq:XP_663118.1
ProteinModelPortal:Q5B1R6 EnsemblFungi:CADANIAT00003572
GeneID:2871792 KEGG:ani:AN5514.2 HOGENOM:HOG000216651
Uniprot:Q5B1R6
Length = 1385
Score = 157 (60.3 bits), Expect = 9.4e-08, P = 9.4e-08
Identities = 46/158 (29%), Positives = 82/158 (51%)
Query: 102 RVIYTTPIKALSNQKYREFEEQFKDVGL----ITGDVTI----NPSSSCLIMTT-EILRN 152
+V+Y P K+L ++++R++ ++F +GL +TGD N + +I+TT E +
Sbjct: 299 KVVYQAPTKSLCSERFRDWNQKFHALGLQCAELTGDTDHSQLGNVQNRQIIVTTPEKWDS 358
Query: 153 MLYRGSE---ITREVGWVIFDEIHYMRDKERGYVWEETLILLSD---NVRFVFLSATIPN 206
M + + + + V + DE+H +++ RG E + + NVRFV LSATIPN
Sbjct: 359 MTRKWKDHIRLMQPVKLFLIDEVHTLKEA-RGATLEAVVSRMKSIGSNVRFVALSATIPN 417
Query: 207 ASQFAQWVSH---LHHQPCHVVY--TDYRPTPLQHYLF 239
+ A W+ H P H + ++RP LQ +++
Sbjct: 418 SEDIATWLGRNATSQHVPAHREHFGEEFRPVKLQKFVY 455
Score = 125 (49.1 bits), Expect = 0.00031, P = 0.00031
Identities = 43/154 (27%), Positives = 82/154 (53%)
Query: 49 KPAREYPFVLDPFQKEAILCI-ENNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQ-RV 103
+P +P V + Q + I +++ +V+++A T +GKTVV E AI L K + +V
Sbjct: 242 RPLFNFP-VFNAVQSKCFHAIYKSDDNVVIAAPTGSGKTVVMELAICRLLNIRKDKKFKV 300
Query: 104 IYTTPIKALSNQKYREFEEQFKDVGL----ITGDVTI----NPSSSCLIMTT-EILRNML 154
+Y P K+L ++++R++ ++F +GL +TGD N + +I+TT E +M
Sbjct: 301 VYQAPTKSLCSERFRDWNQKFHALGLQCAELTGDTDHSQLGNVQNRQIIVTTPEKWDSMT 360
Query: 155 YRGSE---ITREVGWVIFDEIHYMRDKERGYVWE 185
+ + + + V + DE+H +++ RG E
Sbjct: 361 RKWKDHIRLMQPVKLFLIDEVHTLKEA-RGATLE 393
>TAIR|locus:2125677 [details] [associations]
symbol:AT4G32700 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA;IGI] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0009640 "photomorphogenesis" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IGI] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00476 PRINTS:PR00868
PROSITE:PS51194 SMART:SM00482 SMART:SM00490 GO:GO:0005524
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0006260
GO:GO:0009640 GO:GO:0006310 GO:GO:0010468 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003887 KO:K02349
OMA:EASIPEI EMBL:AB192295 IPI:IPI00570534 RefSeq:NP_001078482.1
UniGene:At.48069 ProteinModelPortal:Q588V7 SMR:Q588V7 STRING:Q588V7
PRIDE:Q588V7 EnsemblPlants:AT4G32700.2 GeneID:829406
KEGG:ath:AT4G32700 TAIR:At4g32700 HOGENOM:HOG000030860
PhylomeDB:Q588V7 ProtClustDB:CLSN2698843 Genevestigator:Q588V7
Uniprot:Q588V7
Length = 2154
Score = 113 (44.8 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 38/156 (24%), Positives = 75/156 (48%)
Query: 46 SKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVI 104
+K+ ++ YP+ ++ Q + +L ++++ A TSAGK+ VAE + ++ + +
Sbjct: 508 NKKGISKLYPWQVECLQVDGVL---QKRNLVYCASTSAGKSFVAEVLMLRRVIRTGKMAL 564
Query: 105 YTTPIKALSNQKYREFEEQFKDVGLIT-------GDVTINPSSSCLIMTTEILRNMLYRG 157
P ++ +K E + +G G T+ +S + T E +++ R
Sbjct: 565 LVLPYVSICAEKAEHLEVLLEPLGKHVRSYYGNQGGGTLPKDTSVAVCTIEKANSLINRL 624
Query: 158 SEITR--EVGWVIFDEIHYMRDKERGYVWEETLILL 191
E R E+G ++ DE+H + D+ RGY+ E L L
Sbjct: 625 LEEGRLSELGIIVIDELHMVGDQHRGYLLELMLTKL 660
Score = 72 (30.4 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 195 VRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYL 238
++ V +SAT+PN A W+ +Q T++RP PL+ Y+
Sbjct: 690 LQIVGMSATMPNVGAVADWLQAALYQ------TEFRPVPLEEYI 727
Score = 70 (29.7 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 26/82 (31%), Positives = 40/82 (48%)
Query: 300 KMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEED--R 357
+++ E N V++F S+K CE A ++KL N V D S MD+ S D R
Sbjct: 764 EVVQEGN--SVLIFCSSRKGCESTARHISKLIKNVPVNV---DGENSEFMDIRSAIDALR 818
Query: 358 KLPQ-IENILP-LLRRGIGIHH 377
+ P ++ +L L G+ HH
Sbjct: 819 RSPSGVDPVLEETLPSGVAYHH 840
>UNIPROTKB|I3LT20 [details] [associations]
symbol:LOC100525691 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
GeneTree:ENSGT00640000091272 GO:GO:0008026 EMBL:CU896688
Ensembl:ENSSSCT00000023488 Uniprot:I3LT20
Length = 354
Score = 147 (56.8 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 55/194 (28%), Positives = 94/194 (48%)
Query: 15 ACMKVIVVETLEACLHEVALPPD--LEYQPLAQSKEKPAR-------EYPFVLDPFQKEA 65
+C + V L E PP L+ QPL S + + ++PF +P Q +
Sbjct: 111 SCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQV 169
Query: 66 ILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEE 122
+ N+ +V V A T +GKT+ AE+AI L Q+ R +Y TP++AL+ Q Y ++ E
Sbjct: 170 FNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYE 229
Query: 123 QFKD-----VGLITG----DVTINPSSSCLIMTTEI--LRNMLYRGSEITREVGWVIFDE 171
+F+D V L+TG D+ + + +I T E + + ++ + + + + DE
Sbjct: 230 KFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDE 289
Query: 172 IHYMRDKERGYVWE 185
+H + E G V E
Sbjct: 290 VHLIGG-ENGPVLE 302
>UNIPROTKB|F1S4E9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:CU179709
Ensembl:ENSSSCT00000007570 Uniprot:F1S4E9
Length = 1438
Score = 155 (59.6 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 50/173 (28%), Positives = 94/173 (54%)
Query: 52 REYPFVLDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVI 104
+E+P+ + Q +A + +++V+V A T +GKTV+ E AI L + + +++
Sbjct: 278 KEFPY-FNYIQSKAFDDLLYTDRNVVVCAPTGSGKTVMFELAITRLLMEVPLPWSNIKIV 336
Query: 105 YTTPIKALSNQKYREFEEQFKDVGL----ITGDVTINP----SSSCLIMTT-EILRNML- 154
Y PIKAL +Q++ +++E+F +GL +TGD ++ + +IMTT E +M
Sbjct: 337 YMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTR 396
Query: 155 -YRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206
+R + + + V + DE+H ++D+ RG E +++S FLS + N
Sbjct: 397 KWRDNSLVQLVRLFLIDEVHVVKDENRGPTLE---VVVSRMKTVQFLSHAVEN 446
>SGD|S000003220 [details] [associations]
symbol:HFM1 "Meiosis specific DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0007129 "synapsis" evidence=IGI;IMP]
[GO:0003678 "DNA helicase activity" evidence=IDA] [GO:0007126
"meiosis" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 SGD:S000003220 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0046872 GO:GO:0003677 EMBL:X94357
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0007131 GO:GO:0008026 GO:GO:0007129
GO:GO:0006268 KO:K15271 EMBL:Z72773 EMBL:U22156 RefSeq:NP_011263.2
ProteinModelPortal:P51979 SMR:P51979 DIP:DIP-2604N IntAct:P51979
MINT:MINT-426642 STRING:P51979 PaxDb:P51979 PeptideAtlas:P51979
EnsemblFungi:YGL251C GeneID:852641 KEGG:sce:YGL251C CYGD:YGL251c
GeneTree:ENSGT00550000074822 HOGENOM:HOG000093662 OMA:GNYECNH
OrthoDB:EOG4WWVSR NextBio:971894 Genevestigator:P51979
GermOnline:YGL251C Uniprot:P51979
Length = 1187
Score = 156 (60.0 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 60/246 (24%), Positives = 113/246 (45%)
Query: 10 ESKTKACMKVIVVETLEACLHEVALPPDLE-YQPLAQSKEKPAREYPFVLDPFQKEAILC 68
+ + K KV + ++ + CL LP + + + +P + + + I+
Sbjct: 102 DEEAKKPKKVTIRKSAKKCLSTTILPDSFRGVFKFTEFNKMQSEAFPSIYES-NENCIIS 160
Query: 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD-- 126
V + + ++ E +S + ++IY P K+L + Y+ + F +
Sbjct: 161 SPTGSGKTVLFELAILR-LIKE---TNSDTNNTKIIYIAPTKSLCYEMYKNWFPSFVNLS 216
Query: 127 VGLITGDVTI---NPSSSC-LIMTTEILRNMLYRG-SEITR--E-VGWVIFDEIHYMRDK 178
VG++T D + + C +I+TT ++L R S+ +R E V V+ DEIH +++K
Sbjct: 217 VGMLTSDTSFLETEKAKKCNIIITTPEKWDLLTRRWSDYSRLFELVKLVLVDEIHTIKEK 276
Query: 179 ERGYVWEETLILLS---DNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTD--YRPTP 233
RG E L ++ N+RFV LSAT+PN A W+ + P +++ D YR
Sbjct: 277 -RGASLEVILTRMNTMCQNIRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQ 335
Query: 234 LQHYLF 239
L +++
Sbjct: 336 LTKFVY 341
Score = 39 (18.8 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 300 KMIMERNLAPVIVFSF--SKKDCEI 322
K+ E NL+P++ + F KK +I
Sbjct: 669 KLFKEINLSPLLKYPFLTEKKQSQI 693
>UNIPROTKB|A2PYH4 [details] [associations]
symbol:HFM1 "Probable ATP-dependent DNA helicase HFM1"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00973 eggNOG:COG1204 GO:GO:0008026 KO:K15271
EMBL:AB204867 EMBL:AK094079 EMBL:BX323048 EMBL:AC098691
IPI:IPI00374013 IPI:IPI00852603 RefSeq:NP_001017975.3
UniGene:Hs.454818 ProteinModelPortal:A2PYH4 SMR:A2PYH4
STRING:A2PYH4 PhosphoSite:A2PYH4 PaxDb:A2PYH4 PRIDE:A2PYH4
Ensembl:ENST00000294696 Ensembl:ENST00000370425 GeneID:164045
KEGG:hsa:164045 UCSC:uc001doa.4 CTD:164045 GeneCards:GC01M091726
HGNC:HGNC:20193 HPA:HPA035557 neXtProt:NX_A2PYH4
PharmGKB:PA142671690 HOGENOM:HOG000293238 HOVERGEN:HBG103774
InParanoid:A2PYH4 OMA:EADEMKS OrthoDB:EOG44XJHC ChiTaRS:HFM1
GenomeRNAi:164045 NextBio:88429 ArrayExpress:A2PYH4 Bgee:A2PYH4
CleanEx:HS_HFM1 Genevestigator:A2PYH4 Uniprot:A2PYH4
Length = 1435
Score = 150 (57.9 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 49/175 (28%), Positives = 94/175 (53%)
Query: 52 REYPFVLDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVI 104
+E+P+ + Q +A + +++ ++ A T +GKTVV E AI L + + +++
Sbjct: 276 KEFPY-FNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIV 334
Query: 105 YTTPIKALSNQKYREFEEQFKDVGL----ITGDVTINP----SSSCLIMTT-EILRNML- 154
Y PIKAL +Q++ +++E+F +GL +TGD ++ + +IMTT E +M
Sbjct: 335 YMAPIKALCSQRFDDWKEKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTR 394
Query: 155 -YRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNAS 208
+R + + + V + DE+H ++D+ RG E +++S +S T+ N S
Sbjct: 395 KWRDNSLVQLVRLFLIDEVHIVKDENRGPTLE---VVVSRMKTVQSVSQTLKNTS 446
>UNIPROTKB|F1NMU1 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0006281 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 GO:GO:0003887 GO:GO:0043142 EMBL:AADN02037908
IPI:IPI00584654 Ensembl:ENSGALT00000024072 Uniprot:F1NMU1
Length = 904
Score = 125 (49.1 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 42/150 (28%), Positives = 78/150 (52%)
Query: 61 FQKEAILC--IENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKY 117
+Q E ++ + ++++ SA TSAGKT+VAE I L+ ++ ++ P +++ +K
Sbjct: 60 WQAECLMLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKK 119
Query: 118 REFEEQFKDVGLITGDV--TINPSS--SCL---IMTTEILRNMLYRGSEITR--EVGWVI 168
+ F++V + G +I+P+ S L + T E ++ R E + +G V+
Sbjct: 120 CYLQALFQEVDMRVGGYMGSISPAGRFSLLDVAVCTIEKANGLINRLIEENQMDSLGVVV 179
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFV 198
DE+H + D RGY+ E LL VR++
Sbjct: 180 VDELHMLGDSHRGYLLE----LLLTKVRYI 205
Score = 67 (28.6 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 195 VRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYL 238
++ V +SAT+PN A W+ + TD+RP PL+ ++
Sbjct: 224 IQVVGMSATLPNLGLLASWLD------AELYCTDFRPVPLKEWV 261
Score = 42 (19.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 319 DCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKL 359
D E+Y + E VK+ ++++ ++M+++ E KL
Sbjct: 244 DAELYCTDFRPVPLKEW--VKIGNNIYDSSMNLVREFQPKL 282
>DICTYBASE|DDB_G0279107 [details] [associations]
symbol:DDB_G0279107 "Helicase POLQ-like"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0279107 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000027 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 SUPFAM:SSF47794 GO:GO:0008026 RefSeq:XP_641869.1
ProteinModelPortal:Q54X98 EnsemblProtists:DDB0205039 GeneID:8621875
KEGG:ddi:DDB_G0279107 InParanoid:Q54X98 OMA:LTNDERE
ProtClustDB:CLSZ2430718 Uniprot:Q54X98
Length = 1238
Score = 147 (56.8 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 50/181 (27%), Positives = 85/181 (46%)
Query: 73 QSVLVSAHTSAGKTVVAEYAIASSLK-QSQRVIYTTPIKALSNQKYREFEE-----QFKD 126
++++ S TS GKT+VAE + +L ++++ ++ P ++ +K E Q
Sbjct: 471 ENLIYSLPTSGGKTLVAEIILFRNLLIKNKKSLFIFPFVSIVCEKTESMHEFSSALQIPV 530
Query: 127 VGL--ITGDVTINPSSSCLIMTTE---ILRNMLYRGSEITREVGWVIFDEIHYMRDKERG 181
G G + + P LI T E I+ N L + ++G V+ DEIH + D ERG
Sbjct: 531 EGYHGCNGTIPVLPGKRLLICTIEKANIIVNQLIEDGRLL-DIGCVVVDEIHMIGDGERG 589
Query: 182 YVWE---ETLILLSDN-VRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHY 237
+ E L+ +S ++ + +SATIPN +W +Q +RP PL Y
Sbjct: 590 QLLEVLISKLLYMSKGQIQIIGMSATIPNIDNLQKWFRGGVYQGT------FRPVPLTEY 643
Query: 238 L 238
+
Sbjct: 644 I 644
>UNIPROTKB|E2RA34 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 KO:K15271 CTD:164045
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823 RefSeq:XP_537081.3
Ensembl:ENSCAFT00000032148 GeneID:479956 KEGG:cfa:479956
Uniprot:E2RA34
Length = 1437
Score = 147 (56.8 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 50/176 (28%), Positives = 92/176 (52%)
Query: 30 HEVALPPDLEYQPLAQSKEKPAR------EYPFVLDPFQKEAIL-CIENNQSVLVSAHTS 82
HEV + + L E PA+ E+P+ + Q +A + +++ ++ A T
Sbjct: 250 HEVQGVTENDLDSLKAVTEIPAKFRSIFKEFPY-FNYIQSKAFDDLLYTDRNFVICAPTG 308
Query: 83 AGKTVVAEYAIASSLKQ------SQRVIYTTPIKALSNQKYREFEEQFKDVGL----ITG 132
+GKTVV E AI L + + +++Y PIKAL +Q++ +++E+F +GL +TG
Sbjct: 309 SGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTG 368
Query: 133 DVTINP----SSSCLIMTT-EILRNML--YRGSEITREVGWVIFDEIHYMRDKERG 181
D ++ + +IMTT E +M +R + + + V + DE+H ++D+ RG
Sbjct: 369 DTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRG 424
>UNIPROTKB|E2R5U9 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:AAEX03004823
Ensembl:ENSCAFT00000035369 Uniprot:E2R5U9
Length = 1466
Score = 147 (56.8 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 50/176 (28%), Positives = 92/176 (52%)
Query: 30 HEVALPPDLEYQPLAQSKEKPAR------EYPFVLDPFQKEAIL-CIENNQSVLVSAHTS 82
HEV + + L E PA+ E+P+ + Q +A + +++ ++ A T
Sbjct: 250 HEVQGVTENDLDSLKAVTEIPAKFRSIFKEFPY-FNYIQSKAFDDLLYTDRNFVICAPTG 308
Query: 83 AGKTVVAEYAIASSLKQ------SQRVIYTTPIKALSNQKYREFEEQFKDVGL----ITG 132
+GKTVV E AI L + + +++Y PIKAL +Q++ +++E+F +GL +TG
Sbjct: 309 SGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIGLNCKELTG 368
Query: 133 DVTINP----SSSCLIMTT-EILRNML--YRGSEITREVGWVIFDEIHYMRDKERG 181
D ++ + +IMTT E +M +R + + + V + DE+H ++D+ RG
Sbjct: 369 DTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHVVKDENRG 424
>UNIPROTKB|F1MFR1 [details] [associations]
symbol:HFM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00973 GO:GO:0008026 OMA:EADEMKS
GeneTree:ENSGT00550000074822 EMBL:DAAA02007913 EMBL:DAAA02007914
EMBL:DAAA02007915 EMBL:DAAA02007916 IPI:IPI00839892
Ensembl:ENSBTAT00000027789 Uniprot:F1MFR1
Length = 1438
Score = 143 (55.4 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 47/175 (26%), Positives = 92/175 (52%)
Query: 52 REYPFVLDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ------SQRVI 104
+E+P+ + Q +A + +++ ++ A T +GKTVV E AI L + + +++
Sbjct: 278 KEFPY-FNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIV 336
Query: 105 YTTPIKALSNQKYREFEEQFKDVGL----ITGDVTINP----SSSCLIMTT-EILRNML- 154
Y PIKAL +Q++ +++++F +GL +TGD ++ + +IMTT E +M
Sbjct: 337 YMAPIKALCSQRFDDWKKKFGPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTR 396
Query: 155 -YRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNAS 208
+R + + V + DE+H ++D+ RG E +++S LS + N +
Sbjct: 397 KWRDNSLVHLVRLFLIDEVHVVKDENRGPTLE---VVVSRMKTVQILSPAVENTN 448
>WB|WBGene00020964 [details] [associations]
symbol:polq-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003887 KO:K02349
EMBL:FO081687 EMBL:FO081686 RefSeq:NP_498250.3
ProteinModelPortal:A0FLQ6 PaxDb:A0FLQ6 EnsemblMetazoa:W03A3.2
GeneID:175810 KEGG:cel:CELE_W03A3.2 UCSC:W03A3.2 CTD:175810
WormBase:W03A3.2 InParanoid:A0FLQ6 OMA:EASIPEI NextBio:889766
Uniprot:A0FLQ6
Length = 1661
Score = 142 (55.0 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 47/182 (25%), Positives = 85/182 (46%)
Query: 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFK--DVGL 129
+Q ++ SA TSAGK++VAE ++V++ P +++ +K + + ++ D+ +
Sbjct: 44 DQHLIFSAPTSAGKSIVAELLSWKVASTGRKVLFVLPYISVAREKLHQIQRCWRRDDISV 103
Query: 130 --ITGDVTINPS----SSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYV 183
G NP+ + C I L N + E+G ++ DE+H + D RG
Sbjct: 104 CGFIGPQASNPNEWLGAVCTIEKAASLTNRAL-SEDWFEEIGMIVVDEMHMVFDSSRGAH 162
Query: 184 WEETL--ILL-----SDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQH 236
E L +LL + VR + +SATIP + +W+ V +RP LQ+
Sbjct: 163 IEHMLSKVLLWNQSALEKVRIIGMSATIPELYRIGKWLDG-----AKVFEARFRPIVLQN 217
Query: 237 YL 238
++
Sbjct: 218 HI 219
Score = 48 (22.0 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 16/77 (20%), Positives = 38/77 (49%)
Query: 305 RNLAPVIVFSFSKKDCEIYAMQMA----KLNFNETEEVKLVDDVFSNAMDVLSEEDRKLP 360
RN +++ S SK D E A+ +A ++N ++ ++++ + + + + +R
Sbjct: 252 RNSQTLVMIS-SKLDAEKTALNIASRFHEINKTDSSLLEILKERANGLLFIKHGLERNGC 310
Query: 361 QIENILPLLRRGIGIHH 377
+ N++ L G+ HH
Sbjct: 311 KDRNVMSTLAWGVAYHH 327
>UNIPROTKB|F1PXD9 [details] [associations]
symbol:POLQ "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00640000091272
GO:GO:0008026 EMBL:AAEX03017021 Ensembl:ENSCAFT00000018256
OMA:NECHITF Uniprot:F1PXD9
Length = 1835
Score = 122 (48.0 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 37/137 (27%), Positives = 74/137 (54%)
Query: 61 FQKEAILC--IENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKY 117
+Q E +L + ++++ SA TSAGKT+VAE + L+ ++ ++ P +++ +K
Sbjct: 4 WQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLMLKRVLEMRKKALFILPFVSVAKEKK 63
Query: 118 REFEEQFKDVGL-ITGDV-TINPSS--SCL---IMTTEILRNMLYRGSEITRE--VGWVI 168
+ F+++G+ + G + + +P+ S L + T E ++ R E + +G V+
Sbjct: 64 YYLQSLFQEIGINVDGYMGSTSPTGHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVV 123
Query: 169 FDEIHYMRDKERGYVWE 185
DE+H + D RGY+ E
Sbjct: 124 VDELHMLGDSHRGYLLE 140
Score = 71 (30.1 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 191 LSDNVRFVFLSATIPNASQFAQWVS-HLHHQPCHVVYTDYRPTPL 234
LS+ V+ V +SAT+PN A W++ L+H T++RP PL
Sbjct: 164 LSNAVQIVGMSATLPNLEIVASWLNAELYH-------TNFRPVPL 201
Score = 41 (19.5 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 20/78 (25%), Positives = 35/78 (44%)
Query: 310 VIVFSFSKKDCE----IYAMQMAKLNFNETEEVK---LVDDVFSNA--MDVLSEEDRKLP 360
V++F SKK CE I A + L+ T V+ L V ++V+ + R
Sbjct: 249 VLIFCPSKKWCEKLADIIACEFYNLHHQATGLVRSSELPPVVLEQKGLLEVMDQLKRSPS 308
Query: 361 QIENILP-LLRRGIGIHH 377
++++L + G+ HH
Sbjct: 309 GLDSVLQKTIPWGVAFHH 326
>UNIPROTKB|G4MUH1 [details] [associations]
symbol:MGG_07250 "DEAD/DEAH box helicase" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM001232
GO:GO:0008026 RefSeq:XP_003715470.1 EnsemblFungi:MGG_07250T0
GeneID:2682996 KEGG:mgr:MGG_07250 Uniprot:G4MUH1
Length = 1771
Score = 135 (52.6 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 39/136 (28%), Positives = 65/136 (47%)
Query: 115 QKYREFEEQFKDVGLITGDVTINPSSSCLIMTT--EILRNMLYRGSEITREVGW------ 166
+K+R +EE + T D +N + C I+ T IL+ ML + + W
Sbjct: 785 KKFR-YEESRSVWAIHTRDYRVNNPTGCQILVTVPHILQIMLLSPPNVEKANSWAHRIKR 843
Query: 167 VIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCH--- 223
+IFDE+H + + G VWE+ L+L + + LSAT+ N +F W+S H
Sbjct: 844 IIFDEVHCIGQAQEGVVWEQLLLLAPCPI--IALSATVGNPQEFVAWLSESQKTKGHDLE 901
Query: 224 VVYTDYRPTPLQHYLF 239
+V R + L+ Y++
Sbjct: 902 LVEHKARYSDLRKYIY 917
Score = 124 (48.7 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 46/147 (31%), Positives = 70/147 (47%)
Query: 36 PDLE--YQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAI 93
PD+E + P K P R F D +Q++ + I+ +S+ V A TSAGKT ++ YA+
Sbjct: 696 PDMERGFDP----KFDP-RVSSFNPDAWQRKVLDAIDAKKSLCVIAPTSAGKTFISFYAM 750
Query: 94 ASSLKQSQR--VIYTTPIKALSNQKYREFEEQFK---------DVGLI-TGDVTINPSSS 141
++ S ++Y P KAL NQ E + +FK V I T D +N +
Sbjct: 751 KKVMQSSDNDVLVYVAPTKALVNQIAAEVQGRFKKKFRYEESRSVWAIHTRDYRVNNPTG 810
Query: 142 CLIMTT--EILRNMLYRGSEITREVGW 166
C I+ T IL+ ML + + W
Sbjct: 811 CQILVTVPHILQIMLLSPPNVEKANSW 837
Score = 49 (22.3 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 296 FKIVKMIMERNLAPVIVFSFSKKDCE-IYAMQMAKLNFNETE 336
F+++ + +R P I+F++ + CE I +++L +E E
Sbjct: 1067 FQLLLDLHQRQGLPAIIFNYDRMKCESIMKSVISELKRHELE 1108
Score = 48 (22.0 bits), Expect = 7.3e-06, Sum P(3) = 7.3e-06
Identities = 7/9 (77%), Positives = 9/9 (100%)
Query: 369 LRRGIGIHH 377
LRRG+G+HH
Sbjct: 1213 LRRGVGVHH 1221
>CGD|CAL0003134 [details] [associations]
symbol:orf19.3980 species:5476 "Candida albicans" [GO:0042788
"polysomal ribosome" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0002181 "cytoplasmic translation" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 CGD:CAL0003134 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K01529
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
eggNOG:COG1204 GO:GO:0008026 EMBL:AACQ01000012 EMBL:AACQ01000011
RefSeq:XP_721889.1 RefSeq:XP_722050.1 ProteinModelPortal:Q5AK41
STRING:Q5AK41 GeneID:3636313 GeneID:3636419 KEGG:cal:CaO19.11463
KEGG:cal:CaO19.3980 Uniprot:Q5AK41
Length = 1929
Score = 135 (52.6 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 57/180 (31%), Positives = 86/180 (47%)
Query: 23 ETLEA-CLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIEN-NQSVLVSAH 80
ET++ LH LP + P + +Y +P Q + N N SV V +
Sbjct: 1081 ETIKTDLLHLQPLPVTALHNPDVEQIYSSKFKY---FNPMQTMVFHSLYNTNSSVFVGSP 1137
Query: 81 TSAGKTVVAEYAIASSLKQ--SQRVIYTTPIKALSNQKYREFEEQF-KDVG--LI--TGD 133
T +GKTVVAE AI + + S +V+Y P+KAL ++ ++ E+ K+ L+ TGD
Sbjct: 1138 TGSGKTVVAELAIWHAFNEFPSSKVVYIAPMKALVRERVDDWRERICKNTSHRLVELTGD 1197
Query: 134 V--TINPSSSC-LIMTTE-----ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185
TI +I+TT I RN R + ++V VI DEIH + +RG + E
Sbjct: 1198 SLPTIQEVKEADIIITTPEKFDGISRNWQTR--KFVQQVSLVIMDEIHLLAS-DRGPILE 1254
Score = 55 (24.4 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 16/72 (22%), Positives = 35/72 (48%)
Query: 309 PVIVFSFSKKDCEIYAMQMAKL---NFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENI 365
PV++F S++ + A+ + L N +K+ DD + ++ + ++ +L
Sbjct: 1344 PVLIFVASRRQTRLTALDLIHLCGMESNPRRFLKISDDELQDILENVKDDTLRLS----- 1398
Query: 366 LPLLRRGIGIHH 377
L+ G+G+HH
Sbjct: 1399 ---LQFGMGLHH 1407
>RGD|1309795 [details] [associations]
symbol:Polq "polymerase (DNA directed), theta" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=ISO] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0003887 OMA:CFSDESI IPI:IPI00362354
Ensembl:ENSRNOT00000034841 UCSC:RGD:1309795 Uniprot:D4ABI8
Length = 2540
Score = 125 (49.1 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 44/150 (29%), Positives = 79/150 (52%)
Query: 61 FQKEAILC--IENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKY 117
+Q E +L + ++++ SA TSAGKT+VAE I L+ ++ ++ P +++ +K
Sbjct: 96 WQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKK 155
Query: 118 REFEEQFKDVGL-ITGDV-TINPSS--SCL---IMTTEILRNMLYRGSEITRE--VGWVI 168
+ F++VG+ + G + + +P+ S L + T E ++ R E + +G V+
Sbjct: 156 YYLQSLFQEVGIKVDGYMGSTSPTGRFSSLDVAVCTIERANGLINRLIEENKMDLLGTVV 215
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFV 198
DE+H + D RGY+ E LL V FV
Sbjct: 216 VDELHMLGDSHRGYLLE----LLLTKVCFV 241
Score = 70 (29.7 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 195 VRFVFLSATIPNASQFAQWVS-HLHHQPCHVVYTDYRPTPL 234
V+ V +SAT+PN A W++ L+H TD+RP PL
Sbjct: 260 VQIVGMSATLPNLQLVASWLNAELYH-------TDFRPVPL 293
Score = 42 (19.8 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 23/92 (25%), Positives = 41/92 (44%)
Query: 298 IVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAK--LNFNETEEVKLVDDVF-------S 346
IV + E R+ V+VF SKK CE A +A+ N + E + F
Sbjct: 327 IVSLCYETVRDNHSVLVFCPSKKWCEKVADIIAREFYNLHHQPEGLVKSSEFPPVILDQK 386
Query: 347 NAMDVLSEEDRKLPQIENILP-LLRRGIGIHH 377
+ ++V+ + R ++++L + G+ HH
Sbjct: 387 SLLEVIDQLKRSPSGLDSVLKNTVPWGVAFHH 418
>UNIPROTKB|D4A628 [details] [associations]
symbol:Polq "Polymerase (DNA directed), theta (Predicted),
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043142 "single-stranded DNA-dependent ATPase
activity" evidence=IEA] InterPro:IPR001098 InterPro:IPR001650
InterPro:IPR002298 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271 Pfam:PF00476
PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194 SMART:SM00482
SMART:SM00490 RGD:1309795 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00640000091272 GO:GO:0008026
GO:GO:0003887 GO:GO:0043142 CTD:10721 KO:K02349 OrthoDB:EOG42RD6C
EMBL:CH473967 IPI:IPI00949142 RefSeq:NP_001099348.1
UniGene:Rn.131176 Ensembl:ENSRNOT00000063995 GeneID:288079
KEGG:rno:288079 NextBio:627549 Uniprot:D4A628
Length = 2547
Score = 125 (49.1 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 44/150 (29%), Positives = 79/150 (52%)
Query: 61 FQKEAILC--IENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKY 117
+Q E +L + ++++ SA TSAGKT+VAE I L+ ++ ++ P +++ +K
Sbjct: 96 WQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLETRKKALFILPFVSVAKEKK 155
Query: 118 REFEEQFKDVGL-ITGDV-TINPSS--SCL---IMTTEILRNMLYRGSEITRE--VGWVI 168
+ F++VG+ + G + + +P+ S L + T E ++ R E + +G V+
Sbjct: 156 YYLQSLFQEVGIKVDGYMGSTSPTGRFSSLDVAVCTIERANGLINRLIEENKMDLLGTVV 215
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFV 198
DE+H + D RGY+ E LL V FV
Sbjct: 216 VDELHMLGDSHRGYLLE----LLLTKVCFV 241
Score = 70 (29.7 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 195 VRFVFLSATIPNASQFAQWVS-HLHHQPCHVVYTDYRPTPL 234
V+ V +SAT+PN A W++ L+H TD+RP PL
Sbjct: 260 VQIVGMSATLPNLQLVASWLNAELYH-------TDFRPVPL 293
Score = 42 (19.8 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 23/92 (25%), Positives = 41/92 (44%)
Query: 298 IVKMIME--RNLAPVIVFSFSKKDCEIYAMQMAK--LNFNETEEVKLVDDVF-------S 346
IV + E R+ V+VF SKK CE A +A+ N + E + F
Sbjct: 327 IVSLCYETVRDNHSVLVFCPSKKWCEKVADIIAREFYNLHHQPEGLVKSSEFPPVILDQK 386
Query: 347 NAMDVLSEEDRKLPQIENILP-LLRRGIGIHH 377
+ ++V+ + R ++++L + G+ HH
Sbjct: 387 SLLEVIDQLKRSPSGLDSVLKNTVPWGVAFHH 418
>UNIPROTKB|O75643 [details] [associations]
symbol:SNRNP200 "U5 small nuclear ribonucleoprotein 200 kDa
helicase" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;IDA;TAS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=IC] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0008026 "ATP-dependent helicase
activity" evidence=IDA] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0005682 GO:GO:0003676
Orphanet:791 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOVERGEN:HBG051896 KO:K12854
OMA:KWDVLSR GO:GO:0008026 GO:GO:0000354 EMBL:AY572488 EMBL:AK024391
EMBL:AK090671 EMBL:AB018331 EMBL:Z70200 EMBL:BC065924 EMBL:BC007577
IPI:IPI00168235 IPI:IPI00420014 RefSeq:NP_054733.2
UniGene:Hs.246112 PDB:2Q0Z PDB:4F91 PDB:4F92 PDB:4F93 PDBsum:2Q0Z
PDBsum:4F91 PDBsum:4F92 PDBsum:4F93 ProteinModelPortal:O75643
SMR:O75643 IntAct:O75643 MINT:MINT-5003904 STRING:O75643
PhosphoSite:O75643 PaxDb:O75643 PeptideAtlas:O75643 PRIDE:O75643
Ensembl:ENST00000323853 GeneID:23020 KEGG:hsa:23020 UCSC:uc002svu.3
CTD:23020 GeneCards:GC02M096940 H-InvDB:HIX0002273 HGNC:HGNC:30859
HPA:HPA029321 MIM:601664 MIM:610359 neXtProt:NX_O75643
PharmGKB:PA164726004 InParanoid:O75643 OrthoDB:EOG4WM4SS
PhylomeDB:O75643 ChiTaRS:SNRNP200 EvolutionaryTrace:O75643
GenomeRNAi:23020 NextBio:43966 ArrayExpress:O75643 Bgee:O75643
CleanEx:HS_SNRNP200 Genevestigator:O75643
GermOnline:ENSG00000144028 Uniprot:O75643
Length = 2136
Score = 150 (57.9 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 56/194 (28%), Positives = 94/194 (48%)
Query: 15 ACMKVIVVETLEACLHEVALPPD--LEYQPLAQSKEKPAR-------EYPFVLDPFQKEA 65
+C + V L E PP L+ QPL S + + ++PF +P Q +
Sbjct: 1277 SCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQV 1335
Query: 66 ILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEE 122
+ N+ +V V A T +GKT+ AE+AI L QS R +Y TP++AL+ Q Y ++ E
Sbjct: 1336 FNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYE 1395
Query: 123 QFKD-----VGLITG----DVTINPSSSCLIMTTEI--LRNMLYRGSEITREVGWVIFDE 171
+F+D V L+TG D+ + + +I T E + + ++ + + + + DE
Sbjct: 1396 KFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDE 1455
Query: 172 IHYMRDKERGYVWE 185
+H + E G V E
Sbjct: 1456 VHLIGG-ENGPVLE 1468
Score = 39 (18.8 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 309 PVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSE-EDRKLPQIENILP 367
PVIVF S+K + A+ + + + + + + + L + D L E +L
Sbjct: 1558 PVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK--ETLL- 1614
Query: 368 LLRRGIG-IHHGVKP 381
G+G +H G+ P
Sbjct: 1615 ---NGVGYLHEGLSP 1626
Score = 38 (18.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 168 IFDEIHYMRDKERGYVWEETLILLSDNVRF 197
+FD I M D+ER + + T ++D RF
Sbjct: 1982 VFD-IMEMEDEERNALLQLTDSQIADVARF 2010
>GENEDB_PFALCIPARUM|PFD1060w [details] [associations]
symbol:PFD1060w "u5 small nuclear
ribonucleoprotein-specific protein, putative" species:5833
"Plasmodium falciparum" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 115 (45.5 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 40/154 (25%), Positives = 77/154 (50%)
Query: 58 LDPFQKEAILCIENN--QSVLVSAHTSAGKT---------VVAEYAIASSL--KQSQRVI 104
L+P Q + N +++L+ A T +GKT V+ Y + S ++ +++
Sbjct: 715 LNPIQSKVYDVAFNKYEENMLICAPTGSGKTNIALLCILNVINSYRLTSGNINRKDFKIV 774
Query: 105 YTTPIKALSNQKYREFEEQFKDVGL----ITGDVTINPS----SSCLIMTTEILRNMLYR 156
Y +P+KAL N++ + F + K + + +TGDV ++ S ++MT E + +
Sbjct: 775 YISPMKALVNEQVQSFNLRLKCMNIKVSELTGDVNLSTKELDDSQIIVMTPEKFDVISRK 834
Query: 157 GSE--ITREVGWVIFDEIHYMRDKERGYVWEETL 188
+E + ++ +IFDEIH + + RG V E +
Sbjct: 835 WNEKILLHKIKLIIFDEIHLLNEM-RGNVLESII 867
Score = 68 (29.0 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 300 KMIMERNLAPVIVFSFSKKDCEIYAMQMAKLN-FNETEEVK--LVDDVFSNAMDVLSEED 356
K++ E +++F S+K E Y ++ F +++ + L+D S+ + +LSE++
Sbjct: 1032 KVLEEAGKNQILIFVHSRK--ETYRTSKLLIDRFMKSDNLSKFLIDKKISSEI-LLSEKE 1088
Query: 357 RKL-PQIENILPLLRRGIGIHH-GVK 380
+ +++ ILP G GIHH G+K
Sbjct: 1089 HVINEELKEILPF---GFGIHHAGLK 1111
Score = 56 (24.8 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 185 EETLILLSDNVRFVFLSATIPNASQFAQWV-SHLHHQPCHVVYTD--YRPTPL-QHYL 238
E + + +R V LSAT+PN ++ +H+ + Y D +RP + QHY+
Sbjct: 957 ENHISIRRKKIRLVGLSATLPNYEDVGIFLRAHIERG---IFYFDHSFRPVQIEQHYI 1011
>UNIPROTKB|Q8IFP1 [details] [associations]
symbol:PFD1060w "U5 small nuclear
ribonucleoprotein-specific protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0005681
GO:GO:0003676 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 GO:GO:0004004 KO:K01509
RefSeq:XP_001351528.1 ProteinModelPortal:Q8IFP1 IntAct:Q8IFP1
MINT:MINT-1569750 PRIDE:Q8IFP1 EnsemblProtists:PFD1060w:mRNA
GeneID:812456 KEGG:pfa:PFD1060w EuPathDB:PlasmoDB:PF3D7_0422500
ProtClustDB:CLSZ2515128 Uniprot:Q8IFP1
Length = 2874
Score = 115 (45.5 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 40/154 (25%), Positives = 77/154 (50%)
Query: 58 LDPFQKEAILCIENN--QSVLVSAHTSAGKT---------VVAEYAIASSL--KQSQRVI 104
L+P Q + N +++L+ A T +GKT V+ Y + S ++ +++
Sbjct: 715 LNPIQSKVYDVAFNKYEENMLICAPTGSGKTNIALLCILNVINSYRLTSGNINRKDFKIV 774
Query: 105 YTTPIKALSNQKYREFEEQFKDVGL----ITGDVTINPS----SSCLIMTTEILRNMLYR 156
Y +P+KAL N++ + F + K + + +TGDV ++ S ++MT E + +
Sbjct: 775 YISPMKALVNEQVQSFNLRLKCMNIKVSELTGDVNLSTKELDDSQIIVMTPEKFDVISRK 834
Query: 157 GSE--ITREVGWVIFDEIHYMRDKERGYVWEETL 188
+E + ++ +IFDEIH + + RG V E +
Sbjct: 835 WNEKILLHKIKLIIFDEIHLLNEM-RGNVLESII 867
Score = 68 (29.0 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 24/86 (27%), Positives = 47/86 (54%)
Query: 300 KMIMERNLAPVIVFSFSKKDCEIYAMQMAKLN-FNETEEVK--LVDDVFSNAMDVLSEED 356
K++ E +++F S+K E Y ++ F +++ + L+D S+ + +LSE++
Sbjct: 1032 KVLEEAGKNQILIFVHSRK--ETYRTSKLLIDRFMKSDNLSKFLIDKKISSEI-LLSEKE 1088
Query: 357 RKL-PQIENILPLLRRGIGIHH-GVK 380
+ +++ ILP G GIHH G+K
Sbjct: 1089 HVINEELKEILPF---GFGIHHAGLK 1111
Score = 56 (24.8 bits), Expect = 9.7e-06, Sum P(3) = 9.7e-06
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 185 EETLILLSDNVRFVFLSATIPNASQFAQWV-SHLHHQPCHVVYTD--YRPTPL-QHYL 238
E + + +R V LSAT+PN ++ +H+ + Y D +RP + QHY+
Sbjct: 957 ENHISIRRKKIRLVGLSATLPNYEDVGIFLRAHIERG---IFYFDHSFRPVQIEQHYI 1011
>UNIPROTKB|E1BH78 [details] [associations]
symbol:LOC100850262 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005682 "U5
snRNP" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
CTD:23020 EMBL:DAAA02030116 IPI:IPI00695338 RefSeq:NP_001193092.1
UniGene:Bt.7486 ProteinModelPortal:E1BH78 PRIDE:E1BH78
Ensembl:ENSBTAT00000001130 GeneID:510529 KEGG:bta:510529
NextBio:20869492 Uniprot:E1BH78
Length = 2136
Score = 149 (57.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 55/194 (28%), Positives = 94/194 (48%)
Query: 15 ACMKVIVVETLEACLHEVALPPD--LEYQPLAQSKEKPAR-------EYPFVLDPFQKEA 65
+C + V L E PP L+ QPL S + + ++PF +P Q +
Sbjct: 1277 SCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQV 1335
Query: 66 ILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEE 122
+ N+ +V V A T +GKT+ AE+AI L Q+ R +Y TP++AL+ Q Y ++ E
Sbjct: 1336 FNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYE 1395
Query: 123 QFKD-----VGLITG----DVTINPSSSCLIMTTEI--LRNMLYRGSEITREVGWVIFDE 171
+F+D V L+TG D+ + S ++ T E + + ++ + + + + DE
Sbjct: 1396 KFQDRLSKKVVLLTGETSTDLKLLGKGSVIVSTPEKWDILSRRWKQRKNVQNINLFVVDE 1455
Query: 172 IHYMRDKERGYVWE 185
+H + E G V E
Sbjct: 1456 VHLIGG-ENGPVLE 1468
Score = 39 (18.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 309 PVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSE-EDRKLPQIENILP 367
PVIVF S+K + A+ + + + + + + + L + D L E +L
Sbjct: 1558 PVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK--ETLL- 1614
Query: 368 LLRRGIG-IHHGVKP 381
G+G +H G+ P
Sbjct: 1615 ---NGVGYLHEGLSP 1626
>ASPGD|ASPL0000051297 [details] [associations]
symbol:AN10194 species:162425 "Emericella nidulans"
[GO:0000393 "spliceosomal conformational changes to generate
catalytic conformation" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 EMBL:BN001307
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
GO:GO:0046540 GO:GO:0000388 GO:GO:0008026
EnsemblFungi:CADANIAT00008099 OMA:AMNEACY Uniprot:C8VMF3
Length = 2208
Score = 135 (52.6 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 61/198 (30%), Positives = 97/198 (48%)
Query: 70 ENNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQ---------RVIYTTPIKALSNQKY 117
+++ ++LV A T +GKT VA +I + + SQ +++Y +P+KAL ++
Sbjct: 546 QDDGNMLVCAPTGSGKTNVAMLSILREVGKNRNSQTGEIMLDDFKIVYISPLKALVQEQV 605
Query: 118 REFEEQFKDVGL----ITGDVTINP---SSSCLIMTTEILRNMLYR-GSEI--TREVGWV 167
F + G+ +TGD + + + +I+TT +++ R SE T+ V +
Sbjct: 606 ENFGRRLAPYGIKVAELTGDRQLTKQQIAETQVIVTTPEKFDVITRKASETSYTKLVRLI 665
Query: 168 IFDEIHYMRDKERGYVWEE----TLILLS---DNVRFVFLSATIPNASQFAQWVSHLHHQ 220
I DEIH + D ERG V E T+ + D VR V LSAT+PN A S L
Sbjct: 666 IIDEIHLLHD-ERGPVIESIVSRTIRQVEQTGDAVRIVGLSATLPNYRDVA---SFLRVD 721
Query: 221 PCHVVYT---DYRPTPLQ 235
P ++ YRP PL+
Sbjct: 722 PAKGLFHFDGSYRPCPLK 739
Score = 54 (24.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 295 CF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMA-KLNFNETEEVKLVDDVFSNAMDVL 352
C+ K+++ + + N +++F S+K+ A + K ET L D S A +L
Sbjct: 761 CYNKVIEHVGQ-NRNQMLIFVHSRKETAKTAKYLRDKALEMETIGQILKSDSASRA--IL 817
Query: 353 SEEDRKLPQ--IENILPLLRRGIGIHH 377
+EE + +++ILP G GIHH
Sbjct: 818 AEEAESVNDAALKDILPY---GFGIHH 841
>SGD|S000003503 [details] [associations]
symbol:SLH1 "Putative RNA helicase related to Ski2p"
species:4932 "Saccharomyces cerevisiae" [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA;IGI;IMP] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042788 "polysomal ribosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0002181
"cytoplasmic translation" evidence=IGI] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 SGD:S000003503 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 EMBL:BK006941 GO:GO:0003676 GO:GO:0051607
GO:GO:0002181 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 GO:GO:0008026 GO:GO:0003724 KO:K02201
RefSeq:NP_011793.3 GeneID:853194 KEGG:sce:YGR277C OMA:RKPTGEG
OrthoDB:EOG4H75KM RefSeq:NP_011787.4 GeneID:853187 KEGG:sce:YGR271W
EMBL:U35242 EMBL:Z73056 PIR:S64604 DIP:DIP-5563N IntAct:P53327
MINT:MINT-516762 STRING:P53327 PaxDb:P53327 PeptideAtlas:P53327
EnsemblFungi:YGR271W CYGD:YGR271w NextBio:973332
Genevestigator:P53327 GermOnline:YGR271W Uniprot:P53327
Length = 1967
Score = 141 (54.7 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 50/168 (29%), Positives = 85/168 (50%)
Query: 38 LEYQPLAQSK-EKPARE--YPF-VLDPFQKEAILCIEN-NQSVLVSAHTSAGKTVVAEYA 92
L+ +PL S + P E YPF +P Q + N N++ V + T +GKT+VAE A
Sbjct: 1116 LKLRPLPTSALQNPLIESIYPFKYFNPMQTMTFYTLYNTNENAFVGSPTGSGKTIVAELA 1175
Query: 93 IASSLKQ--SQRVIYTTPIKALSNQKYREFEEQFKDV-G----LITGDVTINPSS---SC 142
I + K ++++Y P+KAL ++ ++ ++ V G +TGD +P +
Sbjct: 1176 IWHAFKTFPGKKIVYIAPMKALVRERVDDWRKKITPVTGDKVVELTGDSLPDPKDVHDAT 1235
Query: 143 LIMTTE-----ILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWE 185
+++TT I RN R + ++V +I DEIH + +RG + E
Sbjct: 1236 IVITTPEKFDGISRNWQTR--KFVQDVSLIIMDEIHLLAS-DRGPILE 1280
Score = 46 (21.3 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 309 PVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQI-ENILP 367
P ++F S++ + A+ + L E + F N +D E L Q+ ++ L
Sbjct: 1371 PALIFVASRRQTRLTALDLIHLCGMEDNPRR-----FLN-IDDEEELQYYLSQVTDDTLK 1424
Query: 368 L-LRRGIGIHH 377
L L+ GIG+HH
Sbjct: 1425 LSLQFGIGLHH 1435
>WB|WBGene00012896 [details] [associations]
symbol:snrp-200 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018991
"oviposition" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0018991 GO:GO:0016477 GO:GO:0008406
GO:GO:0002119 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0042127 GO:GO:0007281 GO:GO:0040020
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 GeneTree:ENSGT00640000091272 KO:K12854
OMA:KWDVLSR GO:GO:0008026 EMBL:AL110485 RefSeq:NP_496710.1
ProteinModelPortal:Q9U2G0 SMR:Q9U2G0 IntAct:Q9U2G0
MINT:MINT-1062451 STRING:Q9U2G0 PaxDb:Q9U2G0
EnsemblMetazoa:Y46G5A.4 GeneID:174901 KEGG:cel:CELE_Y46G5A.4
UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4 InParanoid:Q9U2G0
NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 139 (54.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 57/201 (28%), Positives = 94/201 (46%)
Query: 69 IENNQSVLVSAHTSAGKTVVA----------EYAIASSLKQSQ-RVIYTTPIKALSNQKY 117
+ + + +L+ A T AGKT VA A S+K + +++Y P+K+L +
Sbjct: 487 LRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMV 546
Query: 118 REFEEQFKDVGL----ITGDVTINP----SSSCLIMTTEILRNMLYRGSE--ITREVGWV 167
F ++ G+ +TGD ++ ++ ++ T E + +G E + V +
Sbjct: 547 GSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLL 606
Query: 168 IFDEIHYMRDKERGYVWEETLILL-------SDNVRFVFLSATIPNASQFAQWVSHLHHQ 220
I DEIH + D +RG V E ++ D R V LSAT+PN A + L +
Sbjct: 607 IIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATF---LRVK 662
Query: 221 PCHVVYTD--YRPTPL-QHYL 238
P H+ + D YRP PL Q Y+
Sbjct: 663 PEHLHFFDNSYRPVPLEQQYI 683
>UNIPROTKB|Q9U2G0 [details] [associations]
symbol:Y46G5A.4 "Putative U5 small nuclear
ribonucleoprotein 200 kDa helicase" species:6239 "Caenorhabditis
elegans" [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0018991 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0008380 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0042127 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 OMA:KWDVLSR GO:GO:0008026
EMBL:AL110485 RefSeq:NP_496710.1 ProteinModelPortal:Q9U2G0
SMR:Q9U2G0 IntAct:Q9U2G0 MINT:MINT-1062451 STRING:Q9U2G0
PaxDb:Q9U2G0 EnsemblMetazoa:Y46G5A.4 GeneID:174901
KEGG:cel:CELE_Y46G5A.4 UCSC:Y46G5A.4 CTD:174901 WormBase:Y46G5A.4
InParanoid:Q9U2G0 NextBio:885976 Uniprot:Q9U2G0
Length = 2145
Score = 139 (54.0 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 57/201 (28%), Positives = 94/201 (46%)
Query: 69 IENNQSVLVSAHTSAGKTVVA----------EYAIASSLKQSQ-RVIYTTPIKALSNQKY 117
+ + + +L+ A T AGKT VA A S+K + +++Y P+K+L +
Sbjct: 487 LRSKEHLLLCAPTGAGKTNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMV 546
Query: 118 REFEEQFKDVGL----ITGDVTINP----SSSCLIMTTEILRNMLYRGSE--ITREVGWV 167
F ++ G+ +TGD ++ ++ ++ T E + +G E + V +
Sbjct: 547 GSFSKRLAPFGITVGEMTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLL 606
Query: 168 IFDEIHYMRDKERGYVWEETLILL-------SDNVRFVFLSATIPNASQFAQWVSHLHHQ 220
I DEIH + D +RG V E ++ D R V LSAT+PN A + L +
Sbjct: 607 IIDEIHLLHD-DRGPVLESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATF---LRVK 662
Query: 221 PCHVVYTD--YRPTPL-QHYL 238
P H+ + D YRP PL Q Y+
Sbjct: 663 PEHLHFFDNSYRPVPLEQQYI 683
>UNIPROTKB|F1LNJ2 [details] [associations]
symbol:Ascc3l1 "Protein Ascc3l1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR001650
InterPro:IPR003593 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0008380 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973
GeneTree:ENSGT00640000091272 OMA:KWDVLSR GO:GO:0008026
IPI:IPI00562876 PRIDE:F1LNJ2 Ensembl:ENSRNOT00000043895
ArrayExpress:F1LNJ2 Uniprot:F1LNJ2
Length = 2139
Score = 147 (56.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 55/194 (28%), Positives = 94/194 (48%)
Query: 15 ACMKVIVVETLEACLHEVALPPD--LEYQPLAQSKEKPAR-------EYPFVLDPFQKEA 65
+C + V L E PP L+ QPL S + + ++PF +P Q +
Sbjct: 1280 SCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPF-FNPIQTQV 1338
Query: 66 ILCIENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEE 122
+ N+ +V V A T +GKT+ AE+AI L Q+ R +Y TP++AL+ Q Y ++ E
Sbjct: 1339 FNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYITPMEALAEQVYMDWYE 1398
Query: 123 QFKD-----VGLITG----DVTINPSSSCLIMTTEI--LRNMLYRGSEITREVGWVIFDE 171
+F+D V L+TG D+ + + +I T E + + ++ + + + + DE
Sbjct: 1399 KFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDE 1458
Query: 172 IHYMRDKERGYVWE 185
+H + E G V E
Sbjct: 1459 VHLIGG-ENGPVLE 1471
Score = 39 (18.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 18/75 (24%), Positives = 33/75 (44%)
Query: 309 PVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSE-EDRKLPQIENILP 367
PVIVF S+K + A+ + + + + + + + L + D L E +L
Sbjct: 1561 PVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK--ETLL- 1617
Query: 368 LLRRGIG-IHHGVKP 381
G+G +H G+ P
Sbjct: 1618 ---NGVGYLHEGLSP 1629
Score = 38 (18.4 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 168 IFDEIHYMRDKERGYVWEETLILLSDNVRF 197
+FD I M D+ER + + T ++D RF
Sbjct: 1985 VFD-IMEMEDEERNALLQLTDSQIADVARF 2013
>TAIR|locus:2037375 [details] [associations]
symbol:emb1507 "embryo defective 1507" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0009793 "embryo development ending in seed dormancy"
evidence=NAS] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 EMBL:CP002684 GO:GO:0005829
GO:GO:0005524 GO:GO:0005730 GO:GO:0016020 GO:GO:0003676
GO:GO:0030529 EMBL:AC007369 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 HOGENOM:HOG000157749 KO:K12854 OMA:KWDVLSR
GO:GO:0008026 ProtClustDB:CLSN2679454 IPI:IPI00536616 PIR:E86342
RefSeq:NP_001185050.1 RefSeq:NP_173520.1 UniGene:At.11196
UniGene:At.21273 ProteinModelPortal:Q9SYP1 SMR:Q9SYP1 IntAct:Q9SYP1
STRING:Q9SYP1 PRIDE:Q9SYP1 ProMEX:Q9SYP1 EnsemblPlants:AT1G20960.1
EnsemblPlants:AT1G20960.2 GeneID:838690 KEGG:ath:AT1G20960
TAIR:At1g20960 InParanoid:Q9SYP1 PhylomeDB:Q9SYP1
Genevestigator:Q9SYP1 Uniprot:Q9SYP1
Length = 2171
Score = 135 (52.6 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 56/190 (29%), Positives = 89/190 (46%)
Query: 73 QSVLVSAHTSAGKTVVAEYAIASSLKQSQ-----------RVIYTTPIKALSNQKYREFE 121
+++L+ A T AGKT VA I L+ ++ +++Y P+KAL +
Sbjct: 521 ENILLCAPTGAGKTNVAMLTILQQLEMNRNTDGTYNHGDYKIVYVAPMKALVAEVVGNLS 580
Query: 122 EQFKDVGLI----TGDVTINP---SSSCLIMTTEILRNMLYRGS---EITREVGWVIFDE 171
+ KD G+I +GD ++ + +I+TT +++ R S T+ V +I DE
Sbjct: 581 NRLKDYGVIVRELSGDQSLTGREIEETQIIVTTPEKWDIITRKSGDRTYTQLVRLLIIDE 640
Query: 172 IHYMRDKERGYVWEE----TLILLS---DNVRFVFLSATIPNASQFAQWVSHLHHQPCHV 224
IH + D RG V E TL + +N+R V LSAT+PN A ++ +
Sbjct: 641 IHLLHDN-RGPVLESIVARTLRQIETTKENIRLVGLSATLPNYEDVALFLRVDLKKGLFK 699
Query: 225 VYTDYRPTPL 234
YRP PL
Sbjct: 700 FDRSYRPVPL 709
Score = 132 (51.5 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 57/211 (27%), Positives = 102/211 (48%)
Query: 19 VIVVETLEACLHEVALPPD--LEYQPL-AQSKEKPAREYPFV----LDPFQKEAILCIEN 71
V+ V L E PP L+ QPL + P E + +P Q + + N
Sbjct: 1305 VLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNPNYEILYQDFKHFNPVQTQVFTVLYN 1364
Query: 72 -NQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALSNQKYREFEEQF-K 125
N +VLV+A T +GKT+ AE+AI + + + RV+Y P++A++ +++R +E +F K
Sbjct: 1365 TNDNVLVAAPTGSGKTICAEFAILRNHHEGPDATMRVVYIAPLEAIAKEQFRIWEGKFGK 1424
Query: 126 DVGL----ITGDVTIN----PSSSCLIMTTEILRNMLYRGSE--ITREVGWVIFDEIHYM 175
+GL +TG+ ++ +I T E + R + ++V I DE+H +
Sbjct: 1425 GLGLRVVELTGETALDLKLLEKGQIIISTPEKWDALSRRWKQRKYVQQVSLFIVDELHLI 1484
Query: 176 RDKERGYVWEETLILLSDNVRFVFLSATIPN 206
+ G V E +++S R ++S+ + N
Sbjct: 1485 GG-QHGPVLE---VIVS---RMRYISSQVIN 1508
>TAIR|locus:2059969 [details] [associations]
symbol:AT2G42270 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003676 EMBL:AC002561 GO:GO:0030529
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR004179
Pfam:PF02889 SMART:SM00611 SMART:SM00973 eggNOG:COG1204
HOGENOM:HOG000157749 UniGene:At.12448 UniGene:At.43726 KO:K12854
OMA:RDTHESS GO:GO:0008026 IPI:IPI00539463 PIR:T00936
RefSeq:NP_181756.1 ProteinModelPortal:O48534 SMR:O48534
STRING:O48534 PaxDb:O48534 PRIDE:O48534 EnsemblPlants:AT2G42270.1
GeneID:818828 KEGG:ath:AT2G42270 TAIR:At2g42270 InParanoid:O48534
PhylomeDB:O48534 ProtClustDB:CLSN2679454 ArrayExpress:O48534
Genevestigator:O48534 Uniprot:O48534
Length = 2172
Score = 135 (52.6 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 57/211 (27%), Positives = 106/211 (50%)
Query: 19 VIVVETLEACLHEVALPPD--LEYQPL-AQSKEKPAREYPFV----LDPFQKEAILCIEN 71
V+ V L E PP L+ QPL + P+ E + +P Q + + N
Sbjct: 1306 VLPVSFRHLILPEKYPPPTELLDLQPLPVMALRNPSYETLYQDFKHFNPVQTQVFTVLYN 1365
Query: 72 -NQSVLVSAHTSAGKTVVAEYAIASS-LK---QSQRVIYTTPIKALSNQKYREFEEQF-K 125
+ +V+V+A T +GKT+ AE+AI + L+ + RV+Y P++A++ +++R++E++F K
Sbjct: 1366 TSDNVVVAAPTGSGKTICAEFAILRNHLEGPDSAMRVVYIAPLEAIAKEQFRDWEKKFGK 1425
Query: 126 DVGL----ITG----DVTINPSSSCLIMTTEILRNMLYRGSE--ITREVGWVIFDEIHYM 175
+GL +TG D+ + +I T E + R + ++V I DE+H +
Sbjct: 1426 GLGLRVVELTGETLLDLKLLEKGQIIISTPEKWDALSRRWKQRKYIQQVSLFIVDELHLI 1485
Query: 176 RDKERGYVWEETLILLSDNVRFVFLSATIPN 206
+ G V E +++S R ++S+ + N
Sbjct: 1486 GG-QGGQVLE---VIVS---RMRYISSQVGN 1509
>UNIPROTKB|F5H6Y7 [details] [associations]
symbol:SKIV2L "Helicase SKI2W" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR012961
InterPro:IPR016438 Pfam:PF00271 Pfam:PF08148 PIRSF:PIRSF005198
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0004386 EMBL:AL844853 EMBL:AL662849 EMBL:BX005143
EMBL:CR759782 EMBL:CR753822 EMBL:CR753845 InterPro:IPR025696
Pfam:PF13234 HGNC:HGNC:10898 ChiTaRS:SKIV2L IPI:IPI00946735
SMR:F5H6Y7 Ensembl:ENST00000547025 Ensembl:ENST00000547224
Ensembl:ENST00000547296 Ensembl:ENST00000548561
Ensembl:ENST00000552010 Uniprot:F5H6Y7
Length = 880
Score = 129 (50.5 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 38/160 (23%), Positives = 64/160 (40%)
Query: 229 YRPTPLQHYLFPNGGD---G-IHLIVDDN-KFKEHNYQVAMNVLANXXXXXXXXXXXXXX 283
Y+ L+HYLF G + L++D F Y A+
Sbjct: 116 YKEVLLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQP 175
Query: 284 XXXXXXXVQTNCF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD 342
+ ++ + R PV+VF+FS+ C+ A + L+ + E +
Sbjct: 176 THQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIH 235
Query: 343 DVFSNAMDVLSEEDRKLPQIENILPLLRRGIGIHH-GVKP 381
+ L DR+LPQ+ ++ LL RG+G+HH G+ P
Sbjct: 236 LFLQRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILP 275
>ZFIN|ZDB-GENE-081105-64 [details] [associations]
symbol:si:ch211-251j10.5 "si:ch211-251j10.5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 ZFIN:ZDB-GENE-081105-64 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR004179 Pfam:PF02889 SMART:SM00611 SMART:SM00973
HOVERGEN:HBG051896 HOGENOM:HOG000157749
GeneTree:ENSGT00640000091272 KO:K12854 GO:GO:0008026 EMBL:BX640472
EMBL:CR376723 IPI:IPI00608684 RefSeq:NP_001116729.1
UniGene:Dr.32574 SMR:B0S754 Ensembl:ENSDART00000109885
GeneID:799690 KEGG:dre:799690 NextBio:20933935 Uniprot:B0S754
Length = 2134
Score = 133 (51.9 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 50/181 (27%), Positives = 87/181 (48%)
Query: 15 ACMKVIVVETLEACLHEVALPPD--LEYQPLAQSK------EKPAREYPFVLDPFQKEAI 66
+C + V L E PP L+ QPL S E + +PF +P Q +
Sbjct: 1274 SCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNGAFESLYQNFPF-FNPIQTQVF 1332
Query: 67 LCIENNQ-SVLVSAHTSAGKTVVAEYAIASSLKQSQ--RVIYTTPIKALSNQKYREFEEQ 123
+ N+ +V V A T +GKT+ AE+AI L + R +Y TP++AL+ Q + ++ ++
Sbjct: 1333 NAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPMEALAEQVFLDWHQK 1392
Query: 124 F-----KDVGLITGDVTINPS---SSCLIMTTEILRNML---YRGSEITREVGWVIFDEI 172
F K V L+TG+ + + +I++T ++L ++ + + V I DE+
Sbjct: 1393 FQENLNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQRKNVQNVSLFIIDEV 1452
Query: 173 H 173
H
Sbjct: 1453 H 1453
>SGD|S000000974 [details] [associations]
symbol:BRR2 "RNA-dependent ATPase RNA helicase (DEIH box)"
species:4932 "Saccharomyces cerevisiae" [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000388 "spliceosome
conformational change to release U4 (or U4atac) and U1 (or U11)"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 SGD:S000000974
GO:GO:0005524 GO:GO:0005681 GO:GO:0005682 GO:GO:0003676
EMBL:BK006939 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00700000104562 InterPro:IPR004179 Pfam:PF02889
SMART:SM00611 SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749
EMBL:U18922 KO:K12854 OrthoDB:EOG4MD17F GO:GO:0046540 GO:GO:0004004
PIR:S50675 RefSeq:NP_011099.1 PDB:3HIB PDB:3IM1 PDB:3IM2
PDBsum:3HIB PDBsum:3IM1 PDBsum:3IM2 ProteinModelPortal:P32639
SMR:P32639 DIP:DIP-850N IntAct:P32639 MINT:MINT-606933
STRING:P32639 PaxDb:P32639 EnsemblFungi:YER172C GeneID:856919
KEGG:sce:YER172C CYGD:YER172c OMA:RDTHESS EvolutionaryTrace:P32639
NextBio:983377 Genevestigator:P32639 GermOnline:YER172C
GO:GO:0000388 Uniprot:P32639
Length = 2163
Score = 126 (49.4 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 52/208 (25%), Positives = 93/208 (44%)
Query: 58 LDPFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ------------RVI 104
L+P Q + E + ++L+ A T +GKT +A + +L +++
Sbjct: 499 LNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFKIV 558
Query: 105 YTTPIKALSNQKYREFEEQFKDVGL----ITGDVTIN----PSSSCLIMTTEILRNMLYR 156
Y P+KAL ++ REF+ + +G+ +TGD ++ + L+ T E ++ R
Sbjct: 559 YIAPLKALVQEQVREFQRRLAFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKW-DITTR 617
Query: 157 GSE---ITREVGWVIFDEIHYMRDKERGYVWEETLILL-------SDNVRFVFLSATIPN 206
S I V +I DEIH + D +RG V E + + R + LSAT+PN
Sbjct: 618 NSNNLAIVELVRLLIIDEIHLLHD-DRGPVLESIVARTFWASKYGQEYPRIIGLSATLPN 676
Query: 207 ASQFAQWVSHLHHQPCHVVYTDYRPTPL 234
+++ + + + +RP PL
Sbjct: 677 YEDVGRFL-RVPKEGLFYFDSSFRPCPL 703
Score = 56 (24.8 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 295 CF-KIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLS 353
C+ K+++ I E N +IVF S+K+ A + K F E + + + +L
Sbjct: 726 CYEKVLESINEGN--QIIVFVHSRKETSRTATWL-KNKFAEENITHKLTKNDAGSKQILK 782
Query: 354 EEDRKLPQIENILPLLRRGIGIHH 377
E + ++ L+ GIG HH
Sbjct: 783 TEAANVLD-PSLRKLIESGIGTHH 805
>FB|FBgn0002899 [details] [associations]
symbol:mus301 "mutagen-sensitive 301" species:7227
"Drosophila melanogaster" [GO:0007294 "germarium-derived oocyte
fate determination" evidence=IGI;IMP] [GO:0008298 "intracellular
mRNA localization" evidence=IMP;TAS] [GO:0048477 "oogenesis"
evidence=IGI;TAS] [GO:0009949 "polarity specification of
anterior/posterior axis" evidence=IMP] [GO:0030717 "karyosome
formation" evidence=IMP] [GO:0009951 "polarity specification of
dorsal/ventral axis" evidence=IMP] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5 snRNP"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0009994 "oocyte differentiation" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0016321 "female meiosis chromosome segregation"
evidence=IMP] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009949 GO:GO:0007294 EMBL:AE014296 GO:GO:0006417
GO:GO:0006200 GO:GO:0003676 GO:GO:0004386 GO:GO:0008298
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1204
GeneTree:ENSGT00640000091272 GO:GO:0030717 GO:GO:0016321
GO:GO:0008026 OMA:SRPLENC GO:GO:0009951 EMBL:BT011090
RefSeq:NP_648178.1 UniGene:Dm.15493 SMR:Q9VSE2 IntAct:Q9VSE2
STRING:Q9VSE2 EnsemblMetazoa:FBtr0076689 GeneID:38905
KEGG:dme:Dmel_CG7972 UCSC:CG7972-RA CTD:38905 FlyBase:FBgn0002899
InParanoid:Q9VSE2 OrthoDB:EOG4MKKXB GenomeRNAi:38905 NextBio:810944
Uniprot:Q9VSE2
Length = 1051
Score = 122 (48.0 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 50/188 (26%), Positives = 88/188 (46%)
Query: 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR-VIYTTPIKALSNQKYREFEEQFKDV 127
I ++++ + TS GKT+VAE + L +R V++ P ++ +K D+
Sbjct: 277 IRQRKNLIYALPTSGGKTLVAEILMLRELLCRERNVLFILPYVSIVQEKVSAMSPFAIDL 336
Query: 128 GLITGDVTINPSSSCLIMTTEILRNM----LYRGS-------EITR--EVGWVIFDEIHY 174
I + T C R++ + +G+ ++ R E+G V+ DE+H
Sbjct: 337 DFIVEEYTAG-KGKCPPQPRRKRRSLFIASIEKGAVLMDSLIDVQRPHEIGLVVVDELHL 395
Query: 175 MRDKERGYVWEETL---ILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT-DYR 230
+ +K RG E L + L+ N++ V +SATI N S+ + S L+ VYT +R
Sbjct: 396 IGEKGRGATLEAFLTKVMFLNANIQIVGMSATIGNLSEIS---SFLNAD----VYTRGFR 448
Query: 231 PTPLQHYL 238
P L+ Y+
Sbjct: 449 PVELKEYI 456
Score = 53 (23.7 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 311 IVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILP-LL 369
+VF S+K+CE A+ ++++ + K + S +D++ D+ + +L L
Sbjct: 512 LVFCPSRKNCENVALLLSRI----VPKHKFFEHRRSEKLDLMDALDKMCGILSPVLAKTL 567
Query: 370 RRGIGIHH 377
GI HH
Sbjct: 568 PYGIAYHH 575
>UNIPROTKB|H0Y8H0 [details] [associations]
symbol:DDX60L "Probable ATP-dependent RNA helicase
DDX60-like" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC079926 EMBL:AC093888 HGNC:HGNC:26429 Ensembl:ENST00000505863
Bgee:H0Y8H0 Uniprot:H0Y8H0
Length = 868
Score = 109 (43.4 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 45 QSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR-- 102
+ K++ R F+ + +Q+E + ++ N+S ++ A TS+GKT + Y + L++S
Sbjct: 459 ERKDRDPRVQDFIPNAWQQELLDVVDKNESAVIVAPTSSGKTYASYYCMEKVLRESDVGV 518
Query: 103 VIYTTPIKALSNQKYREFEEQF 124
V+Y P K+L Q E +F
Sbjct: 519 VVYVAPAKSLVGQVAATVENRF 540
Score = 63 (27.2 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 171 EIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWV 214
++HY+ + WE L+++ F+ LSATI N + +W+
Sbjct: 566 QVHYLGREVGAKFWELLLVII--RCPFLVLSATINNPNLLTKWL 607
>UNIPROTKB|G4N5J1 [details] [associations]
symbol:MGG_06124 "Activating signal cointegrator 1 complex
subunit 3" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0043581 "mycelium development" evidence=IEP]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005524 EMBL:CM001233 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K01529 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 GO:GO:0008026 RefSeq:XP_003711991.1
ProteinModelPortal:G4N5J1 EnsemblFungi:MGG_06124T0 GeneID:2684274
KEGG:mgr:MGG_06124 Uniprot:G4N5J1
Length = 1998
Score = 101 (40.6 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 38/131 (29%), Positives = 65/131 (49%)
Query: 131 TGDVTINPSS---SCLIMTTEILRNMLYR----GSEITREVGWVIFDEIHYMRDKERGYV 183
TGD+ + + + +I+TT +++ R +E+ ++V +I DE+H + D ERG V
Sbjct: 390 TGDMHLTKTEIVQTQIIVTTPEKWDVVTRKGTGDTELVQKVRLLIIDEVHMLHD-ERGAV 448
Query: 184 WEETLILLSDN--------VRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPL- 234
E +L+ ++ +R V LSAT+PN A ++ Q +RP PL
Sbjct: 449 LE-SLVARTERQVESTQSLIRIVGLSATLPNFIDVADFLKVNRMQGLFYFDASFRPVPLE 507
Query: 235 QHYLFPNGGDG 245
QH++ G G
Sbjct: 508 QHFIGVKGKAG 518
Score = 61 (26.5 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 67 LCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKD 126
+ + N+++LV A T AGKT A I ++ Q Y TP L N +F +D
Sbjct: 302 IAYKTNENMLVCAPTGAGKTDAAMLTILHAIGQ-----YVTP-NPLQNTTATDFAVHTED 355
Query: 127 VGLI 130
++
Sbjct: 356 FKIV 359
Score = 60 (26.2 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 296 FKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSE- 354
F V+ ++E++ V+VF S++D +Q AK+ +E + D+F +M +
Sbjct: 531 FDKVREMLEKD-HQVMVFVHSRRD----TLQTAKM-LHERAVDQACLDLFDPSMHPKYDA 584
Query: 355 --EDRKLPQIENILPLLRRGIGIHH 377
D K + + L+ +G+GIHH
Sbjct: 585 AIRDMKTCKARELRDLVPKGMGIHH 609
>UNIPROTKB|O75417 [details] [associations]
symbol:POLQ "DNA polymerase theta" species:9606 "Homo
sapiens" [GO:0006260 "DNA replication" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IDA]
[GO:0043142 "single-stranded DNA-dependent ATPase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] InterPro:IPR001098
InterPro:IPR001650 InterPro:IPR002298 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR019760 Pfam:PF00270 Pfam:PF00271
Pfam:PF00476 PRINTS:PR00868 PROSITE:PS00447 PROSITE:PS51194
SMART:SM00482 SMART:SM00490 GO:GO:0005524 GO:GO:0005654
GO:GO:0003684 GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098
EMBL:AC069239 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG1204 GO:GO:0008026 GO:GO:0003887 GO:GO:0043142
EMBL:AF052573 EMBL:AY338826 EMBL:AC079841 EMBL:AF043628
IPI:IPI00794779 IPI:IPI01012356 RefSeq:NP_955452.3
UniGene:Hs.241517 ProteinModelPortal:O75417 STRING:O75417
PhosphoSite:O75417 PaxDb:O75417 PRIDE:O75417 DNASU:10721
Ensembl:ENST00000264233 GeneID:10721 KEGG:hsa:10721 UCSC:uc003eed.3
UCSC:uc003eee.4 CTD:10721 GeneCards:GC03M121150 H-InvDB:HIX0030706
HGNC:HGNC:9186 HPA:HPA048931 MIM:604419 neXtProt:NX_O75417
PharmGKB:PA33506 HOGENOM:HOG000146444 HOVERGEN:HBG005525 KO:K02349
OrthoDB:EOG42RD6C ChEMBL:CHEMBL6025 GenomeRNAi:10721 NextBio:40701
ArrayExpress:O75417 Bgee:O75417 CleanEx:HS_POLH CleanEx:HS_POLQ
Genevestigator:O75417 GermOnline:ENSG00000051341 Uniprot:O75417
Length = 2590
Score = 135 (52.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 53/198 (26%), Positives = 97/198 (48%)
Query: 61 FQKEAILC--IENNQSVLVSAHTSAGKTVVAEYAIASS-LKQSQRVIYTTPIKALSNQKY 117
+Q E +L + ++++ SA TSAGKT+VAE I L+ ++ ++ P +++ +K
Sbjct: 95 WQAECLLLGQVLEGKNLVYSAPTSAGKTLVAELLILKRVLEMRKKALFILPFVSVAKEKK 154
Query: 118 REFEEQFKDVGL-ITGDV-TINPSS--SCL---IMTTEILRNMLYRGSEITRE--VGWVI 168
+ F++VG+ + G + + +PS S L + T E ++ R E + +G V+
Sbjct: 155 YYLQSLFQEVGIKVDGYMGSTSPSRHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVV 214
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRF-----VFLSATIPNASQFAQWVSHLHHQP-- 221
DE+H + D RGY+ E L + R L++++ NA Q + L +
Sbjct: 215 VDELHMLGDSHRGYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELV 274
Query: 222 -----CHVVYTDYRPTPL 234
+ +TD+RP PL
Sbjct: 275 ASWLNAELYHTDFRPVPL 292
Score = 43 (20.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 310 VIVFSFSKKDCEIYAMQMAKLNFNETEEVK-LVDD-----VFSNAMDVLSEED--RKLPQ 361
V++F SKK CE A +A+ +N + + LV V ++L D R+LP
Sbjct: 340 VLLFCPSKKWCEKLADIIAREFYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPS 399
Query: 362 -IENILP-LLRRGIGIHH 377
++++L + G+ HH
Sbjct: 400 GLDSVLQKTVPWGVAFHH 417
Score = 42 (19.8 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 292 QTNCFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVK 339
QT+ K I+ER + V S+ +D + + ++ N TEE K
Sbjct: 1203 QTSTITKQKNIIERQMPCEAVSSYINRDSNV-TINCERIKLN-TEENK 1248
>WB|WBGene00021905 [details] [associations]
symbol:helq-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IGI] [GO:0051117 "ATPase
binding" evidence=IPI] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 GO:GO:0000712 GO:GO:0017116
OMA:SRPLENC EMBL:FO080183 RefSeq:NP_001022911.1
ProteinModelPortal:H2KY86 SMR:H2KY86 EnsemblMetazoa:Y55B1AL.3a
GeneID:175210 KEGG:cel:CELE_Y55B1AL.3 CTD:175210
WormBase:Y55B1AL.3a Uniprot:H2KY86
Length = 923
Score = 109 (43.4 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 48/185 (25%), Positives = 83/185 (44%)
Query: 71 NNQSVLVSAHTSAGKTVVAEYA-IASSLKQSQRVIYTTPIKALSNQKYRE---FEEQF-- 124
+ ++ ++S T AGKT++AE + ++ + + I P A+ +K FE+ F
Sbjct: 183 DGENCILSLPTGAGKTLIAEVLMLREAIVRKRNAILVLPYVAIVQEKISALAPFEDAFGI 242
Query: 125 --KDVGLITG---DVTINPSSSCLIMTTE---ILRNMLYRGSEITREVGWVIFDEIHYMR 176
++ G + S + T E +L N L ++ R VG V+ DE+H +
Sbjct: 243 NIEEYASNKGRFPPIKRRKRVSVYVATIEKANMLINSLITQGQLDR-VGMVVVDELHMIG 301
Query: 177 DKERGYVWEETL--ILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVY-TDYRPTP 233
D RG + E+ L L + V +SAT+PN + L VY T++RP
Sbjct: 302 DGGRGAILEQLLAKFLYKGTGQIVGMSATLPN-------IDDLKFALRAFVYSTNFRPVE 354
Query: 234 LQHYL 238
L ++
Sbjct: 355 LTEFV 359
Score = 60 (26.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 26/97 (26%), Positives = 48/97 (49%)
Query: 295 CFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVD-DVFSNAMDVLS 353
C + K+I +N A ++F +KK+CE A+ +AK + K + D F + LS
Sbjct: 394 CQLLAKLI-PKNSA--VIFCPNKKNCENVAVLIAKTLPAHIRQAKRAESDAFLQSY--LS 448
Query: 354 EEDRKLPQIENILP-LLRRGIGIHHGVKPYGLWQSKK 389
+ D + +++ +L + G+ HH GL Q ++
Sbjct: 449 DNDDE--RMDAVLKQCILSGVAYHHS----GLTQDER 479
>MGI|MGI:1921941 [details] [associations]
symbol:Tdrd9 "tudor domain containing 9" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0007126 "meiosis" evidence=IEA] [GO:0007140 "male meiosis"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009566 "fertilization" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030154 "cell differentiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0034587 "piRNA metabolic process" evidence=IMP] [GO:0043046
"DNA methylation involved in gamete generation" evidence=IMP]
[GO:0071547 "piP-body" evidence=IDA] InterPro:IPR001650
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF04408 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
InterPro:IPR002999 MGI:MGI:1921941 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0030154 GO:GO:0009566 GO:GO:0007283
GO:GO:0003676 GO:GO:0031047 GO:GO:0007140 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 GO:GO:0043046 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0034587 eggNOG:COG1643
GeneTree:ENSGT00700000104393 GO:GO:0008026 GO:GO:0071547
EMBL:AC112520 OMA:INDWFTI CTD:122402 OrthoDB:EOG4F4S96
EMBL:AB362563 EMBL:AC132623 EMBL:BC115831 EMBL:BC116656
IPI:IPI00749982 IPI:IPI00849630 IPI:IPI00914159 RefSeq:NP_083332.1
UniGene:Mm.60648 ProteinModelPortal:Q14BI7 SMR:Q14BI7 STRING:Q14BI7
PhosphoSite:Q14BI7 PaxDb:Q14BI7 PRIDE:Q14BI7
Ensembl:ENSMUST00000079009 GeneID:74691 KEGG:mmu:74691
UCSC:uc007pei.1 UCSC:uc007pej.1 UCSC:uc011yva.1
HOGENOM:HOG000047965 HOVERGEN:HBG072266 InParanoid:B1Q3J8
NextBio:341402 Bgee:Q14BI7 Genevestigator:Q14BI7 Uniprot:Q14BI7
Length = 1383
Score = 124 (48.7 bits), Expect = 0.00039, P = 0.00039
Identities = 59/235 (25%), Positives = 111/235 (47%)
Query: 53 EYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGK-TVVAEYAIASSLKQSQ--RVIYTTP 108
+YP + ++ ++E I IE+N V++ T +GK T + +Y + ++S ++ T P
Sbjct: 130 KYPDLPINRCKEEVISLIESNSVVIIHGATGSGKSTQLPQYVLDHYTQRSAFCNIVVTQP 189
Query: 109 IK--ALSNQKYREFEEQFKDVGLI---TGDVTINPSSSCLI-MTTEILRNMLYRGSEITR 162
K A S ++ E + GL+ G I + LI MTT +L + +
Sbjct: 190 RKIGASSIARWISKERSWTLGGLVGYQVGLEKIATEDTRLIYMTTGVLLQKIVSAKSLM- 248
Query: 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFV---FLSATIPNASQFAQWVS-HLH 218
E + DE+H R +E ++ LL N RFV +SATI N QFA + + +
Sbjct: 249 EFTHIFIDEVHE-RTEEMDFLLLVVRKLLRTNSRFVKVVLMSATI-NCKQFADYFAVPVQ 306
Query: 219 HQ--PCHVVYTDYRPTPLQHYLFPNGG----DGIHLIVDDNKFKEHNYQVAMNVL 267
++ P +V + +P ++ Y + G G+ +++ + Y+VA++++
Sbjct: 307 NKMNPAYVFEVEGKPHAIEEYYLNDLGHIYHSGLPYRLEEPVITKDVYEVAVSLI 361
>RGD|1306942 [details] [associations]
symbol:Tdrd9 "tudor domain containing 9" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0007140 "male meiosis" evidence=ISO;ISS]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=ISO;ISS] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009566
"fertilization" evidence=ISO;ISS] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0034587 "piRNA metabolic process"
evidence=ISO;ISS] [GO:0043046 "DNA methylation involved in gamete
generation" evidence=ISO;ISS] [GO:0071547 "piP-body"
evidence=ISO;ISS] InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF04408
PROSITE:PS51194 SMART:SM00490 SMART:SM00847 InterPro:IPR002999
RGD:1306942 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0030154
GO:GO:0009566 GO:GO:0007283 GO:GO:0003676 GO:GO:0031047
GO:GO:0007140 Pfam:PF00567 SMART:SM00333 PROSITE:PS50304
GO:GO:0043046 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0034587 eggNOG:COG1643 GeneTree:ENSGT00700000104393
GO:GO:0008026 GO:GO:0071547 CTD:122402 OrthoDB:EOG4F4S96
HOGENOM:HOG000047965 EMBL:AABR03050289 EMBL:AABR03048647
EMBL:AABR03049552 EMBL:AABR03049859 EMBL:AABR03050293
EMBL:AABR03051941 EMBL:BC104675 IPI:IPI00655293 IPI:IPI00895578
RefSeq:XP_001072421.2 UniGene:Rn.126122 STRING:Q3MHU3 PRIDE:Q3MHU3
Ensembl:ENSRNOT00000017118 GeneID:299343 KEGG:rno:299343
UCSC:RGD:1306942 NextBio:645254 Genevestigator:Q3MHU3
Uniprot:Q3MHU3
Length = 1384
Score = 124 (48.7 bits), Expect = 0.00039, P = 0.00039
Identities = 55/211 (26%), Positives = 97/211 (45%)
Query: 53 EYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGK-TVVAEYAIASSLKQSQ--RVIYTTP 108
+YP + ++ ++E I IE+N V++ T +GK T + +Y + ++S ++ T P
Sbjct: 130 KYPDLPINRCKEEVISLIESNSVVIIHGATGSGKSTQLPQYVLDHYTQRSAFCNIVVTQP 189
Query: 109 IK--ALSNQKYREFEEQFKDVGLITGDV----TINPSSSCLIMTTEILRNMLYRGSEITR 162
K A S ++ E + GL+ V T + + MTT +L + +
Sbjct: 190 RKIGASSIARWISKERSWTLGGLVGYQVGLEKTATEDTRLIYMTTGVLLQKIVSAKSLM- 248
Query: 163 EVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFV---FLSATIPNASQFAQWVS-HLH 218
E V DE+H R +E ++ LL N RFV +SATI N QFA + + +
Sbjct: 249 EFTHVFIDEVHE-RTEEMDFLLLVVRKLLRTNSRFVKVILMSATI-NCKQFADYFAVPVQ 306
Query: 219 HQ--PCHVVYTDYRPTPLQHYLFPNGGDGIH 247
++ P +V + +P ++ Y + G H
Sbjct: 307 NKMNPAYVFEVEGKPHTIEQYYLNDLGHIYH 337
>UNIPROTKB|F1MNA1 [details] [associations]
symbol:TDRD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071547 "piP-body" evidence=IEA] [GO:0043046 "DNA
methylation involved in gamete generation" evidence=IEA]
[GO:0034587 "piRNA metabolic process" evidence=IEA] [GO:0009566
"fertilization" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007140 "male meiosis" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF04408 PROSITE:PS51194 SMART:SM00490 SMART:SM00847
InterPro:IPR002999 GO:GO:0005524 GO:GO:0005634 GO:GO:0009566
GO:GO:0007283 GO:GO:0003676 GO:GO:0007140 Pfam:PF00567
SMART:SM00333 PROSITE:PS50304 GO:GO:0043046 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0034587
GeneTree:ENSGT00700000104393 GO:GO:0008026 GO:GO:0071547
OMA:INDWFTI EMBL:DAAA02053320 EMBL:DAAA02053321 EMBL:DAAA02053322
EMBL:DAAA02053323 IPI:IPI00699308 Ensembl:ENSBTAT00000027199
Uniprot:F1MNA1
Length = 1392
Score = 124 (48.7 bits), Expect = 0.00039, P = 0.00039
Identities = 58/227 (25%), Positives = 106/227 (46%)
Query: 42 PLAQSKE-----KPAREYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGK-TVVAEYAIA 94
PLA+S + A +YP + + ++E I IE+N V++ T +GK T + +Y +
Sbjct: 118 PLAKSSHVMRIPETAYKYPELPISRCKEEVISLIESNSVVIIHGATGSGKSTQLPQYVLD 177
Query: 95 SSLKQSQ--RVIYTTPIK--ALSNQKYREFEEQFKDVGLITGDVTINP----SSSCLIMT 146
L++S ++ T P K A S ++ E + GL+ V + + + MT
Sbjct: 178 HYLQRSAYCNIVVTQPRKIGASSIARWISRERGWVLGGLVGYQVGLEKIATEDTKLIYMT 237
Query: 147 TEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFV---FLSAT 203
T +L + + E V DE+H R +E ++ LL N RFV +SAT
Sbjct: 238 TGVLLQKIVSAKSLV-EFTHVFIDEVHE-RTEEMDFLLLVVRKLLRTNSRFVKVVLMSAT 295
Query: 204 IPNASQFAQWVS-HLHHQ--PCHVVYTDYRPTPLQHYLFPNGGDGIH 247
I N +FA + + + ++ P ++ + +P ++ Y + N + +H
Sbjct: 296 I-NCREFADYFAVPVQNKMSPAYIFEVEGKPFSIEEY-YLNDLEHVH 340
>ASPGD|ASPL0000071675 [details] [associations]
symbol:AN4723 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045025 "mitochondrial degradosome"
evidence=IEA] [GO:0000262 "mitochondrial chromosome" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0008859 "exoribonuclease II activity" evidence=IEA] [GO:0006264
"mitochondrial DNA replication" evidence=IEA] [GO:0000957
"mitochondrial RNA catabolic process" evidence=IEA] [GO:0000372
"Group I intron splicing" evidence=IEA] [GO:0000965 "mitochondrial
RNA 3'-end processing" evidence=IEA] InterPro:IPR001650
InterPro:IPR022192 Pfam:PF00271 Pfam:PF12513 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
EMBL:BN001303 HOGENOM:HOG000175283 EnsemblFungi:CADANIAT00005706
OMA:CALITGE Uniprot:C8VAV2
Length = 832
Score = 121 (47.7 bits), Expect = 0.00046, P = 0.00046
Identities = 44/156 (28%), Positives = 72/156 (46%)
Query: 37 DLEY-QPLAQSKEKPAR-EYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIA 94
D Y +P + ++K A YP P Q AI + + V T++GKT Y
Sbjct: 153 DARYSEPYLEQQQKIADLRYPAEWYP-QARAI---QRTIHLHVGP-TNSGKT----YHAL 203
Query: 95 SSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGD-VTINPSSSCLIMTTEILRNM 153
L+ S+ Y P++ L+ + Y F+ V L+TGD V ++ ++++ + M
Sbjct: 204 KRLESSKSGFYAGPLRLLAQEVYHRFKSSGIPVSLVTGDEVRLSEGEKAVVVSNTV--EM 261
Query: 154 LYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLI 189
+ G T EVG + DEI + D RG+ W L+
Sbjct: 262 VNLGQ--TYEVG--VIDEIQMIADPRRGWAWTRALL 293
>UNIPROTKB|E2RNT3 [details] [associations]
symbol:DHX9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=IEA] [GO:0034605 "cellular response to heat" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0001085
"RNA polymerase II transcription factor binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF04408 PROSITE:PS00690
PROSITE:PS50137 PROSITE:PS51194 SMART:SM00358 SMART:SM00490
SMART:SM00847 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005813
GO:GO:0034605 GO:GO:0005730 Gene3D:3.30.160.20 GO:GO:0030529
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR011709 Pfam:PF07717 GO:GO:0008026
GeneTree:ENSGT00550000074257 CTD:1660 KO:K13184 GO:GO:0070937
OMA:DDWIRLQ GO:GO:0070934 EMBL:AAEX03005146 EMBL:AAEX03005147
RefSeq:XP_537154.2 Ensembl:ENSCAFT00000020976 GeneID:480032
KEGG:cfa:480032 NextBio:20855120 Uniprot:E2RNT3
Length = 1276
Score = 123 (48.4 bits), Expect = 0.00046, P = 0.00046
Identities = 69/247 (27%), Positives = 101/247 (40%)
Query: 34 LPPDLEYQPLAQSKEKPA--REYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAE 90
L +L YQ L Q + PA +E + + F+ E + I N V++ T GKT
Sbjct: 365 LKNELMYQ-LEQDHDLPAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVP 423
Query: 91 YAIASSLKQSQR-----VIYTTP--IKALSNQK---YREFEEQFKDVGLITG--DVTINP 138
I Q+ R ++ T P I A+S + Y EE K G V P
Sbjct: 424 QFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAYERGEEPGKSCGYSVRFESVLPRP 483
Query: 139 SSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSD----- 193
+S + T +L L G R + VI DEIH RD ++ L++L D
Sbjct: 484 YASIMFCTVGVLLRKLEAG---IRGISHVIVDEIHE-RDINTDFL----LVVLRDVVQAY 535
Query: 194 -NVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVD- 251
VR V +SATI + S F ++ + C ++ R P+Q Y + H I
Sbjct: 536 PEVRIVLMSATI-DTSMFCEYFFN-----CPIIEVYGRTYPVQEYFLEDCIQMTHFIPPP 589
Query: 252 -DNKFKE 257
D K K+
Sbjct: 590 KDKKKKD 596
>UNIPROTKB|D4A4G4 [details] [associations]
symbol:Hfm1 "Protein Hfm1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 IPI:IPI00388911 Ensembl:ENSRNOT00000033855
Uniprot:D4A4G4
Length = 410
Score = 117 (46.2 bits), Expect = 0.00047, P = 0.00047
Identities = 34/111 (30%), Positives = 63/111 (56%)
Query: 52 REYPFVLDPFQKEAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS------QRVI 104
+E+P+ + Q +A + +++ ++ A T +GKTVV E AI L ++ +V+
Sbjct: 275 KEFPY-FNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEAPLPWLNMKVV 333
Query: 105 YTTPIKALSNQKYREFEEQFKDVGL----ITGDVTINP----SSSCLIMTT 147
Y PIKAL +Q++ +++E+F +GL +TGD ++ + +IMTT
Sbjct: 334 YMAPIKALCSQRFDDWKEKFGPIGLTCKELTGDTVMDDLFEIQHANIIMTT 384
>ZFIN|ZDB-GENE-030131-4078 [details] [associations]
symbol:dhx57 "DEAH (Asp-Glu-Ala-Asp/His) box
polypeptide 57" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001650 InterPro:IPR006575
InterPro:IPR007502 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00642 Pfam:PF04408 Pfam:PF05773 PROSITE:PS50103
PROSITE:PS51194 SMART:SM00356 SMART:SM00490 SMART:SM00847
ZFIN:ZDB-GENE-030131-4078 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 GeneTree:ENSGT00550000074257
EMBL:BX248102 EMBL:AL935288 EMBL:CT998560 IPI:IPI00513320
Ensembl:ENSDART00000080351 ArrayExpress:F1QCB1 Bgee:F1QCB1
Uniprot:F1QCB1
Length = 1430
Score = 121 (47.7 bits), Expect = 0.00086, P = 0.00086
Identities = 58/212 (27%), Positives = 104/212 (49%)
Query: 58 LDPFQK-EAIL-CIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR------VIYTTP- 108
L +QK EAIL C+ NQ +++S T GKT I + Q+ R +I T P
Sbjct: 582 LPAWQKREAILECLVKNQVLVISGMTGCGKTTQIPQFILDNFLQTGRPDRVANIICTQPR 641
Query: 109 -IKALSNQKYREFEEQFKDVGLITG-DV---TINPSSSCLIM-TTEILRNMLYRGSEITR 162
I A++ R +E+ + +G TG + T+ S + L+ TT +L L E++
Sbjct: 642 RISAIAVAT-RVAQERAEALGHSTGYQIRLETVRSSITRLMFCTTGVLLRRLEGDPELSG 700
Query: 163 EVGWVIFDEIHYMRDKERGYVWE--ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQ 220
V VI DE+H R +E ++ + LI+ +++ + +SAT+ NA F+Q+ ++
Sbjct: 701 -VTHVIVDEVHE-RTEESDFLLLVLKDLIVKRTDLKVIMMSATL-NAELFSQYFNNC--- 754
Query: 221 PCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDD 252
PC ++ R P++ + + +++D
Sbjct: 755 PC--IHIPGRTFPVEQFFLEDAIAKTRYVIED 784
>UNIPROTKB|F1NYH9 [details] [associations]
symbol:HELQ "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR010995
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00640000091272 SUPFAM:SSF47794 GO:GO:0008026
OMA:SRPLENC EMBL:AADN02009041 IPI:IPI00596471
Ensembl:ENSGALT00000018274 Uniprot:F1NYH9
Length = 995
Score = 112 (44.5 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 50/188 (26%), Positives = 82/188 (43%)
Query: 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR-VIYTTPIKALSNQKYREFEEQFKDV 127
++ ++++ S TS GKT+VAE I L Q+ V+ P A+ +K ++
Sbjct: 256 LQQRKNLIYSLPTSGGKTLVAEILILQELLCRQKDVLMILPYVAIVQEKVWGLSSFGIEL 315
Query: 128 GLITGDVT-----INP-----SSSCLIMTTE---ILRNMLYRGSEITREVGWVIFDEIHY 174
G + + P S I T E L N L I ++G V+ DE+H
Sbjct: 316 GFLVEEYAGSKGRFPPIKRRIKKSLYIATIEKGHALVNSLIETDRID-DLGLVVVDELHM 374
Query: 175 MRDKERGYVWEETL---ILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT-DYR 230
+ + RG V E TL + S N V +SAT+ N +++ + YT ++R
Sbjct: 375 IGEGSRGAVLEMTLAKILYASKNTHVVGMSATLNNVGDLQKFLQAEY-------YTKNFR 427
Query: 231 PTPLQHYL 238
P L+ Y+
Sbjct: 428 PVELKEYI 435
Score = 53 (23.7 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 311 IVFSFSKKDCEIYAMQMAK-LN--FNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILP 367
++F +KK+CE A + K LN F E K D+ N D+ P + +P
Sbjct: 488 LIFCPTKKNCENVATMVCKYLNKEFRAHRE-KEKQDLIKNLKDI--GNGSICPVLRQTIP 544
Query: 368 LLRRGIGIHH 377
G+ HH
Sbjct: 545 F---GVAYHH 551
>POMBASE|SPAC9.03c [details] [associations]
symbol:brr2 "U5 snRNP complex subunit Brr2 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000393 "spliceosomal
conformational changes to generate catalytic conformation"
evidence=IGI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00382 SMART:SM00490 PomBase:SPAC9.03c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005681
GO:GO:0005682 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR004179 Pfam:PF02889 SMART:SM00611
SMART:SM00973 eggNOG:COG1204 HOGENOM:HOG000157749 PIR:T39188
RefSeq:NP_593346.1 ProteinModelPortal:Q9UT24 IntAct:Q9UT24
STRING:Q9UT24 EnsemblFungi:SPAC9.03c.1 GeneID:2543676
KEGG:spo:SPAC9.03c KO:K12854 OMA:KWDVLSR OrthoDB:EOG4MD17F
NextBio:20804682 GO:GO:0046540 GO:GO:0004004 GO:GO:0000393
Uniprot:Q9UT24
Length = 2176
Score = 126 (49.4 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 48/157 (30%), Positives = 78/157 (49%)
Query: 99 QSQRVIYTTPIKALSNQKYREFEEQFKDVGL----ITGDVTINP---SSSCLIMTTEILR 151
Q+ +++Y P+KAL + F ++ + +TGD + S + +I+TT
Sbjct: 573 QNFKIVYIAPLKALVQEMVNNFSKRLTPYNIRVAELTGDSQLTKQQISETQIIVTTPEKW 632
Query: 152 NMLYR-GSEIT--REVGWVIFDEIHYMRDKERGYVWEETLILLS-------DNVRFVFLS 201
+++ R ++++ V VI DE+H + D ERG V E + + + VR V LS
Sbjct: 633 DIITRKANDLSYVNLVRLVIIDEVHLLHD-ERGPVLESIVARIFRHQEETLEQVRLVGLS 691
Query: 202 ATIPNASQFAQWVSHLHHQPCH-VVYTD--YRPTPLQ 235
AT+PN + A S LH P + Y D YRP PL+
Sbjct: 692 ATLPNYTDVA---SFLHVDPKKGLFYFDSTYRPCPLK 725
Score = 45 (20.9 bits), Expect = 0.00095, Sum P(2) = 0.00095
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 295 CFKIVKMIMERNLAPVIVFSFSKKDCEIYAMQMA-KLNFNETEEVKLVDDVFSNAMDVLS 353
C++ V +N V++F S+K+ A + K ET L D S ++L
Sbjct: 747 CYEKVMQHAGKN--QVLIFVHSRKETAKTARFIRDKALEEETIGHLLRSDAASR--EILR 802
Query: 354 EEDRKLPQIENILPLLRRGIGIHH 377
E EN+ LL G IHH
Sbjct: 803 AEADSTSD-ENLKDLLPYGFAIHH 825
>UNIPROTKB|I3LHZ6 [details] [associations]
symbol:DHX9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS51194
SMART:SM00358 SMART:SM00490 SMART:SM00847 InterPro:IPR014720
GO:GO:0005524 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 GeneTree:ENSGT00550000074257 OMA:DDWIRLQ
Ensembl:ENSSSCT00000025297 Uniprot:I3LHZ6
Length = 1274
Score = 120 (47.3 bits), Expect = 0.00098, P = 0.00098
Identities = 69/249 (27%), Positives = 103/249 (41%)
Query: 32 VALPPDLEYQPLAQSKEKPA--REYPFV-LDPFQKEAILCIENNQSVLVSAHTSAGKTVV 88
V + +L YQ L Q ++ A +E + + F+ E + I N V+V T GKT
Sbjct: 358 VEIKNELMYQ-LEQDRDLQAILQERELLPVKKFESEILEAISQNPVVIVRGATGCGKTTQ 416
Query: 89 AEYAIASSLKQSQR-----VIYTTP--IKALSNQK---YREFEEQFKDVGLITGDVTI-- 136
I Q+ R ++ T P I A+S + Y EE K G +I
Sbjct: 417 VPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAYERGEEPGKSCGYSVRFESILP 476
Query: 137 NPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSD--- 193
P +S + T +L L G R + VI DEIH RD ++ L++L D
Sbjct: 477 RPHASIMFCTVGVLLRKLEAG---IRGISHVIVDEIHE-RDINTDFL----LVVLRDVVQ 528
Query: 194 ---NVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIV 250
VR V +SATI + S F ++ + C ++ R P+Q Y + H I
Sbjct: 529 AYPEVRIVLMSATI-DTSMFCEYFFN-----CPIIEVYGRTYPVQEYFLEDCIQMTHFIP 582
Query: 251 D--DNKFKE 257
D K K+
Sbjct: 583 PPKDKKKKD 591
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 391 370 0.00086 117 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 108
No. of states in DFA: 617 (66 KB)
Total size of DFA: 264 KB (2141 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:10
No. of threads or processors used: 24
Search cpu time: 30.30u 0.09s 30.39t Elapsed: 00:00:22
Total cpu time: 30.32u 0.09s 30.41t Elapsed: 00:00:32
Start: Thu Aug 15 13:01:50 2013 End: Thu Aug 15 13:02:22 2013
WARNINGS ISSUED: 1