RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6275
(391 letters)
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 92.7 bits (229), Expect = 9e-23
Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 16/183 (8%)
Query: 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKY 117
L P Q EA+ + + +++L++ T+AGKT++AE A+ + + +Y P++AL+ +KY
Sbjct: 26 LFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKY 85
Query: 118 REFEEQFKD-------VGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFD 170
F++ K G ++ T+E +++ + + V ++ D
Sbjct: 86 ESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVD 145
Query: 171 EIHYMRDKERGYVWE---ETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYT 227
EIH + ++RG E + ++ +R + LSAT PN ++ A+W+ +
Sbjct: 146 EIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLD------ADYYVS 199
Query: 228 DYR 230
D+R
Sbjct: 200 DWR 202
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 76.9 bits (188), Expect = 2e-16
Identities = 19/179 (10%), Positives = 45/179 (25%), Gaps = 2/179 (1%)
Query: 69 IENNQSVLVSAHTSAGKT-VVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDV 127
+ ++ H AGKT + ++K+ R + P + ++ +
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRY 65
Query: 128 GLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEET 187
+M L + +I DE H+ +
Sbjct: 66 QTPAIRAEHTGREIVDLMCHATFTMRLLSPIRV-PNYNLIIMDEAHFTDPASIAARGYIS 124
Query: 188 LILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGI 246
+ +F++AT P + + + + + G
Sbjct: 125 TRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVW 183
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 70.3 bits (171), Expect = 2e-14
Identities = 25/198 (12%), Positives = 48/198 (24%), Gaps = 27/198 (13%)
Query: 33 ALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYA 92
L P+ + P QK I +S +A T GKT
Sbjct: 22 CLFPEDFLLKEFVEFFRKCVGEPR---AIQKMWAKRILRKESFAATAPTGVGKTSFGLAM 78
Query: 93 IASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRN 152
+ +R P L Q + + G+ T ++ E
Sbjct: 79 SLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQ 138
Query: 153 -------------MLYRGSEITREVGWVIFDEIHYMRDKER---------GYVWEETLIL 190
L + ++ D++ + + G+ ++
Sbjct: 139 NLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKS 198
Query: 191 LSDNVR--FVFLSATIPN 206
R + +AT
Sbjct: 199 WVGEARGCLMVSTATAKK 216
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 65.5 bits (158), Expect = 1e-13
Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 8/141 (5%)
Query: 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQS-QRVIYTTPIKALSNQKYREFEEQFKDV 127
++ + ++ H AGKT I + + R + P + + ++ F
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKF 63
Query: 128 GLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIH---YMRDKERGYVW 184
+ M L + + + +I DE H RG+
Sbjct: 64 HTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVN-WEVIIMDEAHFLDPASIAARGWAA 122
Query: 185 EETLILLSDNVRFVFLSATIP 205
++ + ++AT P
Sbjct: 123 H---RARANESATILMTATPP 140
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 60.8 bits (147), Expect = 2e-11
Identities = 34/160 (21%), Positives = 66/160 (41%), Gaps = 13/160 (8%)
Query: 60 PFQKEAI-LCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQR--VIYTTPIKALSNQK 116
Q + I L + + +++ A T +GKT + + ++ I TP + L+ Q
Sbjct: 29 DIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQV 88
Query: 117 YREFEEQFKD----VGLITGDVTINP------SSSCLIMTTEILRNMLYRGSEITREVGW 166
E E + + I G I P +++ ++ T + + + RG+ + V +
Sbjct: 89 ADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKY 148
Query: 167 VIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206
I DE M + E+ L + + R + SAT+P
Sbjct: 149 FILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPR 188
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 58.7 bits (141), Expect = 3e-11
Identities = 21/136 (15%), Positives = 37/136 (27%), Gaps = 6/136 (4%)
Query: 69 IENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128
++ Q + A T +GK+ A Q +V+ P A + +
Sbjct: 5 PQSFQVAHLHAPTGSGKSTKVPAAY---AAQGYKVLVLNPSVAATLGFGAYMSKAHGVD- 60
Query: 129 LITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM-RDKERGYVWEET 187
+ ++ +T L G +I DE H G
Sbjct: 61 -PNIRTGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLD 119
Query: 188 LILLSDNVRFVFLSAT 203
+ V +AT
Sbjct: 120 QAETAGARLVVLATAT 135
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 59.9 bits (144), Expect = 3e-11
Identities = 25/157 (15%), Positives = 54/157 (34%), Gaps = 12/157 (7%)
Query: 48 EKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTT 107
P + L +Q++A+ ++ + T +GKT A+A+ + S +
Sbjct: 61 PTPYFDAEISLRDYQEKALERWLVDKRGCIVLPTGSGKTH---VAMAAINELSTPTLIVV 117
Query: 108 PIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWV 167
P AL+ Q ++ +T + ++ +
Sbjct: 118 PTLALAEQWKERLGIFGEEY----VGEFSGRIKELKPLTVSTYDSAYVNAEKLGNRFMLL 173
Query: 168 IFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATI 204
IFDE+H++ + + +S + L+AT
Sbjct: 174 IFDEVHHLPAESY-----VQIAQMSIAPFRLGLTATF 205
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 58.2 bits (139), Expect = 1e-10
Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 15/191 (7%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL-KQSQRVIYTTPIKALSNQKYR 118
+Q+ + + L+ T GKT++A L K +V+ P K L Q
Sbjct: 12 IYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAE 70
Query: 119 EFEEQFKD----VGLITGDVTINPSSSCL------IMTTEILRNMLYRGSEITREVGWVI 168
F F + +TG+ + S + T + + N L G +V ++
Sbjct: 71 SFRRLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIV 130
Query: 169 FDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA-SQFAQWVSHLHHQPCHVVYT 227
FDE H + N + L+A+ + + + +++L + +
Sbjct: 131 FDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYR-S 189
Query: 228 DYRPTPLQHYL 238
+ P ++ Y+
Sbjct: 190 ENSP-DVRPYV 199
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 56.2 bits (134), Expect = 8e-10
Identities = 24/165 (14%), Positives = 50/165 (30%), Gaps = 18/165 (10%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYRE 119
P Q+E I + + + LV T GK++ + + +P+ +L + +
Sbjct: 28 PGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNG---LTVVVSPLISLMKDQVDQ 84
Query: 120 FEEQFKDVGLITGDVTINPSSSC-----------LIMTTEILRNMLYRGSEITREVGWVI 168
+ + T L + E L + +
Sbjct: 85 LQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144
Query: 169 FDEIHYMRDKERGYVWE----ETLILLSDNVRFVFLSATIPNASQ 209
DE H + + E L + F+ L+AT + ++
Sbjct: 145 VDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTR 189
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 233
Score = 56.3 bits (135), Expect = 9e-10
Identities = 38/187 (20%), Positives = 63/187 (33%), Gaps = 22/187 (11%)
Query: 33 ALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYA 92
A D E L + +C LV GKT VA A
Sbjct: 37 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 96
Query: 93 IASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEIL-- 150
++ ++V P L+ Q Y F ++F + + + + T+IL
Sbjct: 97 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV---RIEMISRFRSAKEQTQILAE 153
Query: 151 -----------RNMLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVF 199
+ L + +++G +I DE H G +E + + NV +
Sbjct: 154 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH-----RFGVRHKERIKAMRANVDILT 208
Query: 200 LSAT-IP 205
L+AT IP
Sbjct: 209 LTATPIP 215
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 49.1 bits (116), Expect = 2e-07
Identities = 30/180 (16%), Positives = 58/180 (32%), Gaps = 17/180 (9%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ---RVIYTTPIKALSNQK 116
Q+ AIL V+ A + GKT +I ++ + + P + L+ Q
Sbjct: 37 AIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 96
Query: 117 YREFEEQFKDVGLITGDVTINPSSSC------------LIMTTEILRNMLYRGSEITREV 164
+ +G + ++ T + +ML R + +
Sbjct: 97 QKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 156
Query: 165 GWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV 224
+ DE M + + L+ N + V LSAT+P+ + P +
Sbjct: 157 KMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVL--EVTKKFMRDPIRI 214
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 48.0 bits (113), Expect = 7e-07
Identities = 25/175 (14%), Positives = 63/175 (36%), Gaps = 10/175 (5%)
Query: 39 EYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLK 98
++ E + +QK+A+ N+ +++ TSAG++++ L+
Sbjct: 95 DFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLE 154
Query: 99 Q-SQRVIYTTPIKALSNQKYREFEEQFKDVGLITGDVTINPSSSC-----LIMTTEILRN 152
+++ P AL+ Q +F + + + S + +
Sbjct: 155 NYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQT 214
Query: 153 MLYRGSEITREVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNA 207
++ + E + G ++ DE H K + L++ + LS ++ +
Sbjct: 215 VVKQPKEWFSQFGMMMNDECHLATGK----SISSIISGLNNCMFKFGLSGSLRDG 265
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 44.5 bits (104), Expect = 6e-06
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 309 PVIVFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPL 368
V+VF +++ E A++++ + E L + +S + +
Sbjct: 42 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAE---------C 92
Query: 369 LRRGIGIHHGVKPYGLWQS 387
+R+G HH G +
Sbjct: 93 VRKGAAFHHAGLLNGQRRV 111
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 39.6 bits (91), Expect = 2e-04
Identities = 31/180 (17%), Positives = 73/180 (40%), Gaps = 17/180 (9%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQK 116
P Q+E+I + + +L A GK+ + L K + + + P + L+ Q
Sbjct: 28 PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV 87
Query: 117 YREFEEQFKDVGLITGDVT------------INPSSSCLIMTTEILRNMLYRGSEITREV 164
+ + K +G T ++ + +I T + +++ +G V
Sbjct: 88 SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV 147
Query: 165 GWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV 224
++ DE + ++ + E+ ++ L N + + SAT P + Q ++++ +P +
Sbjct: 148 QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQ--KFMNSHLEKPYEI 205
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 39.4 bits (91), Expect = 3e-04
Identities = 31/160 (19%), Positives = 54/160 (33%), Gaps = 13/160 (8%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL---KQSQRVIYTTPIKALSNQK 116
Q+ AI+ I VL A + GKT A + ++ + + P + L+ Q
Sbjct: 35 AIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQI 94
Query: 117 YREFEEQFKDVGLITGDVTINPSSSC----------LIMTTEILRNMLYRGSEITREVGW 166
+ + + S ++ T + + + R T ++
Sbjct: 95 QKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKM 154
Query: 167 VIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206
I DE M + LL + V LSAT+PN
Sbjct: 155 FILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPN 194
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 39.1 bits (90), Expect = 5e-04
Identities = 33/175 (18%), Positives = 60/175 (34%), Gaps = 27/175 (15%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSL------------KQSQRVIYTT 107
P QK AI I ++ ++ A T +GKT I + L + +
Sbjct: 46 PIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILA 105
Query: 108 PIKALSNQKYREFEEQFKDVGL----ITGDVTINP-------SSSCLIMTTEILRNMLYR 156
P + L+ Q E ++ + L + G + L+ T L + + +
Sbjct: 106 PTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK 165
Query: 157 GSEITREVGWVIFDEIHYMRDKERG----YVWEETLILLSDNVRFVFLSATIPNA 207
+++ DE M D + EE+ + N + + SAT P
Sbjct: 166 NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKE 220
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 37.3 bits (85), Expect = 0.001
Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 16/179 (8%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS---QRVIYTTPIKALSNQK 116
P Q+EAI + +L A GKT +K + + P + L+ Q
Sbjct: 26 PIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQT 85
Query: 117 YREFEEQFKDVGLITGDVT-----------INPSSSCLIMTTEILRNMLYRGSEITREVG 165
+ K G+ T +N + L+ T + ++ R +
Sbjct: 86 SQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCS 145
Query: 166 WVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHV 224
I DE M ++ + E+ L L + + SAT P + +++ H+P +
Sbjct: 146 LFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVK--EFMVKHLHKPYEI 202
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 36.0 bits (82), Expect = 0.004
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 17/164 (10%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ---RVIYTTPIKALSNQK 116
Q E I VL A + GKT V A L+ V+ + L+ Q
Sbjct: 26 EVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 85
Query: 117 YREFEEQFKDVGLITGDVTINPSSS-------------CLIMTTEILRNMLYRGSEITRE 163
+E+E K + + V S ++ T + + S +
Sbjct: 86 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKH 145
Query: 164 VGWVIFDEIHYMRDKERGYVWEETLI-LLSDNVRFVFLSATIPN 206
+ I DE M ++ + + + + + SAT+
Sbjct: 146 IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK 189
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 34.8 bits (79), Expect = 0.010
Identities = 28/161 (17%), Positives = 57/161 (35%), Gaps = 14/161 (8%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQSQ---RVIYTTPIKALSNQK 116
Q+ AI I + V+ + + GKT ++ L + + P + L+ Q
Sbjct: 42 AIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQI 101
Query: 117 YREFEEQFKDVGLITGDVT-----------INPSSSCLIMTTEILRNMLYRGSEITREVG 165
+ + + ++ + T + +M+ R S TR +
Sbjct: 102 QKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 161
Query: 166 WVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206
++ DE M +K + L + V +SAT+P+
Sbjct: 162 MLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH 202
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 34.7 bits (79), Expect = 0.020
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 7/85 (8%)
Query: 72 NQSVLVSAHTSAGKTVVAEYAIA--SSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGL 129
+QS+L + + AGKT + I + + S + T I + Y E E+Q
Sbjct: 91 DQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANP 150
Query: 130 ITG-----DVTINPSSSCLIMTTEI 149
I N +SS I
Sbjct: 151 ILEAFGNAKTVKNDNSSRFGKFIRI 175
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 34.3 bits (77), Expect = 0.022
Identities = 27/200 (13%), Positives = 55/200 (27%), Gaps = 13/200 (6%)
Query: 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQS----QRVIYTTPIKALS 113
L+P Q++A+ + LV A +GKT V IA ++ + + T +
Sbjct: 2 LNPGQQQAVEFVTGP--CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAA 59
Query: 114 NQKYREFEEQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIH 173
+ + ++ + I+ E + + + + +
Sbjct: 60 REMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKEL 119
Query: 174 YMRDKERGYVWEETLILLSDNVRFVFLS-------ATIPNASQFAQWVSHLHHQPCHVVY 226
E V + LI N + + A FA
Sbjct: 120 TEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNV 179
Query: 227 TDYRPTPLQHYLFPNGGDGI 246
D+ L L + +
Sbjct: 180 LDFDDLILLPTLLLQANEEV 199
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 33.8 bits (76), Expect = 0.025
Identities = 35/205 (17%), Positives = 71/205 (34%), Gaps = 13/205 (6%)
Query: 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIASSLKQ----SQRVIYTTPIKALS 113
L+ Q+EA+ E +L+ A +GKT V + IA + + ++ T +
Sbjct: 12 LNKEQQEAVRTTEGP--LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAA 69
Query: 114 NQKYREFEEQFKDVGLITGDVTINPSSSCL-IMTTEILRNMLYRGSEITREVGWVIFDEI 172
+ + T + S C+ I+ +I R + R I + +
Sbjct: 70 REMRERVQSLLGGAAEDVWISTFH--SMCVRILRRDIDRIGINRNFSILDPTDQLSVMKT 127
Query: 173 HYMRDKERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHLHHQPCHVVYTDYRPT 232
+E IL + + L QFA+ S + + VY +Y+
Sbjct: 128 ILKEKNIDPKKFEPRTILGTISAAKNEL----LPPEQFAKRASTYYEKVVSDVYQEYQQR 183
Query: 233 PLQHYLFPNGGDGIHLIVDDNKFKE 257
L+++ + I ++ +
Sbjct: 184 LLRNHSLDFDDLIMTTIQLFDRVPD 208
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 31.1 bits (69), Expect = 0.27
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 58 LDPFQKEAILCIENNQSVLVSAHTSAGKTVV----AEYAIASSLKQSQRVIYTT 107
L+ Q+EA+ E +L+ A +GKT V Y +A ++ T
Sbjct: 12 LNKEQQEAVRTTEGP--LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAIT 63
>d1yuda1 b.82.1.16 (A:1-158) Hypothetical protein SO0799 {Shewanella
oneidensis [TaxId: 70863]}
Length = 158
Score = 29.8 bits (67), Expect = 0.28
Identities = 10/65 (15%), Positives = 18/65 (27%)
Query: 214 VSHLHHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNYQVAMNVLANAGDA 273
VSH H ++ + L Y+ G+ + + Q + G A
Sbjct: 51 VSHFHRLTADEMWYFHAGQSLTIYMISPEGELTTAQLGLDLAAGERPQFLVPKGCIFGSA 110
Query: 274 AKAGD 278
Sbjct: 111 MNQDG 115
>d1yu5x1 a.14.1.1 (X:10-76) Villin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 67
Score = 28.1 bits (63), Expect = 0.36
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 35 PPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVL 76
P LE PL A + P +DP +KE L E+ ++V
Sbjct: 1 PTKLETFPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVF 42
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 30.1 bits (67), Expect = 0.55
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 72 NQSVLVSAHTSAGKTVVAEYAI---ASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVG 128
NQS L++ + AGKT + I A ++ K + + + +
Sbjct: 121 NQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEA 180
Query: 129 LITGDVTINPSSSCLIMTTEI 149
T N +SS I
Sbjct: 181 YGNAKTTRNNNSSRFGKFIRI 201
>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco
(Nicotiana tabacum) [TaxId: 4097]}
Length = 236
Score = 28.7 bits (64), Expect = 1.0
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 312 VFSFSKKDCEIYAMQMAKLNFNETEEVKLVDDVFSNAMDVLSEEDRKLPQIENILPLLRR 371
VF + + A +AK F+E +D L EE K I+ LLR
Sbjct: 181 VFYYEILNSPDRACNLAKQAFDEA----------IAELDTLGEESYK--DSTLIMQLLRD 228
Query: 372 GI 373
+
Sbjct: 229 NL 230
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 29.0 bits (64), Expect = 1.2
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 10/56 (17%)
Query: 71 NNQSVLVSAHTSAGKTVVAEYAI---------ASSLKQSQRVIYTTPI-KALSNQK 116
NQS++VS + AGKTV A+YA+ AS ++V+ + PI +++ N K
Sbjct: 93 RNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEEKVLASNPIMESIGNAK 148
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 28.5 bits (62), Expect = 1.3
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 18/165 (10%)
Query: 60 PFQKEAILCIENNQSVLVSAHTSAGKTVVA---EYAIASSLKQSQRVIYTTPIKALSNQK 116
Q+ I +S++ + T GKT + + + T P + L+ Q
Sbjct: 26 EIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQI 85
Query: 117 YREFEEQFKDV--------GLITGDVTINPSSSCLIMTTEILR-------NMLYRGSEIT 161
Y E + K + G + L + I+ + + +
Sbjct: 86 YHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDV 145
Query: 162 REVGWVIFDEIHYMRDKERGYVWEETLILLSDNVRFVFLSATIPN 206
++ DE M D ++ + +++ + SATIP
Sbjct: 146 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPE 190
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 28.5 bits (63), Expect = 1.4
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 15/83 (18%)
Query: 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTPIKALSNQKYREFEEQFKDVGLIT 131
NQ V++S + AGKT ++ + + T + + + + D +
Sbjct: 86 NQCVIISGESGAGKTEASKKIMQ----------FLTFVSSNQSPNGERISKMLLDSNPLL 135
Query: 132 GDVT-----INPSSSCLIMTTEI 149
N +SS E+
Sbjct: 136 EAFGNAKTLRNDNSSRFGKYMEM 158
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 28.5 bits (63), Expect = 1.6
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 71 NNQSVLVSAHTSAGKTVVAEYAI 93
NQS+L++ + AGKTV + I
Sbjct: 122 ENQSILITGESGAGKTVNTKRVI 144
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 28.3 bits (62), Expect = 1.7
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 23 ETLEACLHEVALPPDLEYQPLAQSKEKPAREYPFVLDPFQKEAILCIENNQSVLVSAHTS 82
T+ +EV +++ LAQ+ +K +QK A + ++S
Sbjct: 116 RTVARFFNEVNHAIEVDEALLAQTLDK--LFPVSDEINWQKVAAAVALTRRISVISGGPG 173
Query: 83 AGKTVVAEYAIASSLKQSQRVIYTTPIKALSN 114
GKT +A+ ++ + + A +
Sbjct: 174 TGKTTTVAKLLAALIQMADGERCRIRLAAPTG 205
>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase
(GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 90
Score = 26.4 bits (58), Expect = 2.3
Identities = 4/19 (21%), Positives = 9/19 (47%)
Query: 90 EYAIASSLKQSQRVIYTTP 108
E+AI + + ++ P
Sbjct: 12 EHAIGWAFAKQGYEVHFYP 30
>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 232
Score = 27.4 bits (60), Expect = 2.4
Identities = 19/163 (11%), Positives = 46/163 (28%), Gaps = 25/163 (15%)
Query: 122 EQFKDVGLITGDVTINPSSSCLIMTTEILRNMLYRGSEITREVGWVIFDEIHYM------ 175
+ F+D+ L G + +P+ ++T L R +E R++G+ F +
Sbjct: 6 QNFQDLNLFRG-LGEDPAYHPPVLTDRPRDWPLDRWAEAPRDLGYSDFSPYQWRGLRMLK 64
Query: 176 -------------RDK-----ERGYVWEETLILLSDNVRFVFLSATIPNASQFAQWVSHL 217
+ E G +L D + + + + +
Sbjct: 65 DPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP 124
Query: 218 HHQPCHVVYTDYRPTPLQHYLFPNGGDGIHLIVDDNKFKEHNY 260
++ + L + + +D+ N
Sbjct: 125 ASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNI 167
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.0 bits (61), Expect = 2.4
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 72 NQSVLVSAHTSAGKTVVAEYAIASSLKQSQRVIYTTP 108
+ +LV+ T GK+V+ + L + R++ P
Sbjct: 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 27.7 bits (61), Expect = 3.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 72 NQSVLVSAHTSAGKTVVAEYAI 93
NQS+L++ + AGKT + I
Sbjct: 125 NQSLLITGESGAGKTENTKKVI 146
>d1x9da1 a.102.2.1 (A:245-697) Class I alpha-1;2-mannosidase,
catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 453
Score = 27.2 bits (60), Expect = 3.8
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 153 MLYR--GSEITREVGWVIFDEI-HYMRDKERGY-----VWEETLILLSDNVRFVFLSAT 203
LYR G ++ GW I + R GY V + D + FL T
Sbjct: 362 YLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNVQDPQKPEPRDKMESFFLGET 420
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 25.7 bits (56), Expect = 9.6
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 297 KIVKMIMERNLAP--VIVFSFSKKDCEIYAMQMAKLNFN 333
K I + ++F SKK C+ A ++ L N
Sbjct: 24 FYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGIN 62
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,475,859
Number of extensions: 68723
Number of successful extensions: 249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 231
Number of HSP's successfully gapped: 44
Length of query: 391
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 304
Effective length of database: 1,213,086
Effective search space: 368778144
Effective search space used: 368778144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.3 bits)