BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6276
(271 letters)
Database: swissprot
455,621 sequences; 169,969,125 total letters
Searching..................................................done
>gi|28380043|sp|Q9DAA6.1|EXOS1_MOUSE RecName: Full=Exosome complex component CSL4; AltName: Full=Exosome
component 1
Length = 195
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/163 (42%), Positives = 105/163 (64%), Gaps = 8/163 (4%)
Query: 4 PPI--CIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61
PP+ CIPG+R+C L+ G GTY R GY++S+LAG + +N V V+ V
Sbjct: 3 PPVRYCIPGERLCNLEEG-SPGSGTYTRHGYIFSSLAGCL---MKTSENGAVPVVSVMRE 58
Query: 62 KKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEM 121
+ ++P G VVT ++ ++ K H++ VG+T L FR +R+E++RATE D++E+
Sbjct: 59 TESQLLPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEI 118
Query: 122 YKCYRPGDIILAR-LPLKELHS-YQLSTAENELGVVIALSEAA 162
YK +RPGDI+LA+ + L + S Y L+TAENELGVV+A SE+
Sbjct: 119 YKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESG 161
>gi|14285410|sp|Q9Y3B2.1|EXOS1_HUMAN RecName: Full=Exosome complex component CSL4; AltName: Full=Exosome
component 1
Length = 195
Score = 133 bits (334), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 106/163 (65%), Gaps = 8/163 (4%)
Query: 4 PPI--CIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61
PP+ CIPG+R+C L+ G GTY R GY++S+LAG + + +N + V+ V
Sbjct: 3 PPVRYCIPGERLCNLEEG-SPGSGTYTRHGYIFSSLAGCLMKS---SENGALPVVSVVRE 58
Query: 62 KKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEM 121
+ ++P G +VT ++ ++ K H++ VG+ L +FR +R+E+VRATE D++E+
Sbjct: 59 TESQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEI 118
Query: 122 YKCYRPGDIILAR-LPLKELHS-YQLSTAENELGVVIALSEAA 162
YK +RPGDI+LA+ + L + S Y L+TAENELGVV+A SE+
Sbjct: 119 YKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSESG 161
>gi|28380026|sp|O59821.2|CSL4_SCHPO RecName: Full=Exosome complex component csl4
Length = 181
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 80/155 (51%), Gaps = 11/155 (7%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEV 65
+ +PGQ + + + G GT R Y+ ST G + D ++ SV ++
Sbjct: 3 LVLPGQVVARGAPN---GEGTVKRGDYIISTRTG-------IFDPEKNSVTYPRKVEETA 52
Query: 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCY 125
++P G +V AR+ + ++ V + F+ ++ +++RATE +++++ +
Sbjct: 53 VLPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSF 112
Query: 126 RPGDIILAR-LPLKELHSYQLSTAENELGVVIALS 159
RPGDI+ A + L + SY L+TA N+LGV+ A S
Sbjct: 113 RPGDIVRALVISLGDGSSYFLTTARNDLGVIFAQS 147
>gi|1730832|sp|P53859.1|CSL4_YEAST RecName: Full=Exosome complex component CSL4; AltName: Full=CEP1
synthetic lethal protein 4
Length = 292
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 91 ISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELHSYQLSTAE 149
+S ++ L TFR ++R ++VR+T+ DR+++ +C++PGDI+ A+ L L + +Y L+TA
Sbjct: 190 VSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTAR 249
Query: 150 NELGVVIA 157
N+LGVV A
Sbjct: 250 NDLGVVFA 257
>gi|1175376|sp|Q09704.1|RRP4_SCHPO RecName: Full=Exosome complex component rrp4; AltName:
Full=Ribosomal RNA-processing protein 4
Length = 329
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 10/130 (7%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEV 65
+ PGQ + D + G GTY G +Y+++AG+V NK +SV + S
Sbjct: 57 LVTPGQLVTD-DPQFMRGHGTYFEDGGIYASVAGSVQ-----RVNKLISVKPLRSK---- 106
Query: 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCY 125
VP GD++ +I VQ K + + N L + L R E D ++M +
Sbjct: 107 YVPEIGDLIIGKIAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFF 166
Query: 126 RPGDIILARL 135
+ GD+++A +
Sbjct: 167 QEGDLLVAEV 176
>gi|166919579|sp|A5UJS0.1|ECR1_METS3 RecName: Full=Probable exosome complex RNA-binding protein 1
Length = 298
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 21/132 (15%)
Query: 3 NPPICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYK 62
N + IPG+ + D + GRGT+ G + S+L G VS+ NK++ VI + S
Sbjct: 6 NKDLVIPGEVLA--DDEYYSGRGTFKENGKICSSLMGLVSLR-----NKKIRVIPLKSK- 57
Query: 63 KEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMY 122
VP GDVV +I V+ S+ + ++ + +L V E + E+
Sbjct: 58 ---YVPKKGDVVIGKIKDVR--------FSMWDVDINSPYSGILPAFEVFGRE--KKELN 104
Query: 123 KCYRPGDIILAR 134
K + GD++ R
Sbjct: 105 KVFDVGDVLFLR 116
>gi|29336818|sp|Q8TYC0.1|ECR1_METKA RecName: Full=Probable exosome complex RNA-binding protein 1
Length = 239
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEV 65
+ PG+ + + ++ GTY +YS + G V I D + + VI ++ +
Sbjct: 13 VVTPGELLAR--GQVIASEGTYTSGDEVYSKVTGLVDI-----DGRRIRVIPLAGPYR-- 63
Query: 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIE--MYK 123
P+PGD V V++ + +I V A+L N E+D IE + +
Sbjct: 64 --PSPGDFVVG---IVEEVKFSSWLIDV-----RAPLPAILHVSNALEEEVDLIETDLSR 113
Query: 124 CYRPGDIILA 133
YRPGD+I A
Sbjct: 114 YYRPGDVITA 123
>gi|731671|sp|P38792.1|RRP4_YEAST RecName: Full=Exosome complex component RRP4; AltName:
Full=Ribosomal RNA-processing protein 4
Length = 359
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 24/141 (17%)
Query: 2 SNPPICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61
S+ I PG+ + D + G GTY YS++AGTVS N+ +SVI +
Sbjct: 50 SDSQIVTPGELVTD-DPIWMRGHGTYFLDNMTYSSVAGTVS-----RVNRLLSVIPL--- 100
Query: 62 KKEVIVPTPGDVVTARIMAVQQHLCKAH-------VISVGNTALSRTFRALLRRENVRAT 114
K P GD V RI V K V+ +G+ L +LRR+ +
Sbjct: 101 -KGRYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLP---GGILRRK----S 152
Query: 115 EIDRIEMYKCYRPGDIILARL 135
E D ++M + GD++ A +
Sbjct: 153 ESDELQMRSFLKEGDLLNAEV 173
>gi|29336821|sp|Q8U0L8.1|ECR1_PYRFU RecName: Full=Probable exosome complex RNA-binding protein 1
Length = 264
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 22/145 (15%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEV 65
+ +PG + Q GRGT+ +YST+ G V I + + VI +
Sbjct: 11 LVVPGTLLAQ--GPYKNGRGTFKEGSRIYSTVIGLVDIKGNT-----IRVIPLEG----P 59
Query: 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEID--RIEMYK 123
+P GD V +I+ V+ + + +G+ + A L+ ++ +ID R ++ K
Sbjct: 60 YIPEVGDNVLGKIVDVK---FSSWTVDIGS-----PYSATLKIQDYTDEKIDLLRTDLRK 111
Query: 124 CYRPGDIILARLP-LKELHSYQLST 147
+ GDII A++ + E+++ +L+T
Sbjct: 112 FFDIGDIIYAKVKGINEVNNIELTT 136
>gi|62900370|sp|Q8VBV3.1|EXOS2_MOUSE RecName: Full=Exosome complex component RRP4; AltName: Full=Exosome
component 2; AltName: Full=Ribosomal RNA-processing
protein 4
Length = 293
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSS-YKKE 64
+ +PG I D+ + G GTY+ + L +++AG+V NK + V + + Y E
Sbjct: 26 LVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVE-----RVNKLICVKALKTRYNGE 79
Query: 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKC 124
V GD+V RI VQQ K S ++ L + L E R + D + M
Sbjct: 80 V-----GDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGF 134
Query: 125 YRPGDIILARL------PLKELHSYQLSTAENELGVVIALSEA 161
+ GD+I A + LH+ L + GV++ +S +
Sbjct: 135 LQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPS 177
>gi|122143860|sp|Q2KID0.1|EXOS2_BOVIN RecName: Full=Exosome complex component RRP4; AltName: Full=Exosome
component 2; AltName: Full=Ribosomal RNA-processing
protein 4
Length = 293
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSS-YKKE 64
+ +PG I D+ + G GTY+ + L +++AG+V NK + V + + Y E
Sbjct: 26 LVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVE-----RVNKLICVKALKTRYNGE 79
Query: 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKC 124
V GD+V RI VQQ K S ++ L + L E R + D + M
Sbjct: 80 V-----GDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGF 134
Query: 125 YRPGDIILARL------PLKELHSYQLSTAENELGVVIALSEA 161
+ GD+I A + LH+ L + GV++ +S +
Sbjct: 135 LQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPS 177
>gi|380876879|sp|E3GZ90.1|ECR1_METFV RecName: Full=Probable exosome complex RNA-binding protein 1
Length = 222
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEV 65
I +PG+++ +D + GRGT++ + +YS++ G VSI K + VI +
Sbjct: 9 IVVPGEKLA--GNDYIAGRGTFIEEDKIYSSVVGLVSIK-----GKRIEVIPLQGK---- 57
Query: 66 IVPTPGDVVTARIMAVQ 82
+P D V +++ V+
Sbjct: 58 YIPKKNDSVIGKVVDVK 74
>gi|13878748|sp|Q13868.2|EXOS2_HUMAN RecName: Full=Exosome complex component RRP4; AltName: Full=Exosome
component 2; AltName: Full=Ribosomal RNA-processing
protein 4
Length = 293
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 18/163 (11%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVS-INKHVEDNKEVSVIEVSSYKKE 64
+ +PG I D+ + G GTY+ + L +++AG+V +NK +I V + K
Sbjct: 26 LVVPGDTITT-DTGFMRGHGTYMGEEKLIASVAGSVERVNK---------LICVKALKTR 75
Query: 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKC 124
I GD+V RI VQQ K S ++ L + L E R + D + M
Sbjct: 76 YIGEV-GDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGF 134
Query: 125 YRPGDIILARL------PLKELHSYQLSTAENELGVVIALSEA 161
+ GD+I A + LH+ L + GV++ +S +
Sbjct: 135 LQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPS 177
>gi|56757595|sp|P25386.2|USO1_YEAST RecName: Full=Intracellular protein transport protein USO1;
Short=Int-1
Length = 1790
Score = 34.7 bits (78), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 61/105 (58%), Gaps = 12/105 (11%)
Query: 161 AASLFRSSEKLTNDIEFLKQEKLKLYEELSSSQKENEILRQTTGDL--EVRLM------Q 212
AA L + E++ N +E +L +E++S+Q+ENE +++ +L EV+ M Q
Sbjct: 1158 AAQLKKYEEQIANKERQYNEEISQLNDEITSTQQENESIKKKNDELEGEVKAMKSTSEEQ 1217
Query: 213 MNEVKGEME---FKIKELNKKNQS-ESKLSDTIRELNEENIGLKQ 253
N K E++ +IKEL KKN++ E+ L ++I+ + E + +K+
Sbjct: 1218 SNLKKSEIDALNLQIKELKKKNETNEASLLESIKSVESETVKIKE 1262
>gi|147647143|sp|Q8TCG1.2|CIP2A_HUMAN RecName: Full=Protein CIP2A; AltName: Full=Cancerous inhibitor of
PP2A; AltName: Full=p90 autoantigen
Length = 905
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 168 SEKLTNDIEFLKQEKLKLYEELSSSQKENEILRQTTGDLEVRLMQMNEVKGEMEFKIKEL 227
SE+ +DIE L Q KL S +E+EIL ++ +L R + +++ L
Sbjct: 700 SERAQSDIEHLFQHNRKL----ESVAEEHEILTKSYMELLQRNESTEKKNKDLQITCDSL 755
Query: 228 NKKNQSESKLSDTIRELNEENIG--LKQKVELQEAENQLI 265
NK+ ++ KL+++++E NE++I ++++ + +E +NQL+
Sbjct: 756 NKQIETVKKLNESLKEQNEKSIAQLIEKEEQRKEVQNQLV 795
>gi|300669700|sp|Q9D180.3|WDR65_MOUSE RecName: Full=WD repeat-containing protein 65
Length = 1249
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 14/83 (16%)
Query: 162 ASLFRSSEKLTNDIEFLKQEKLKLYEELSSSQKENEILR-------QTTGDLEVRLMQMN 214
+SL + E+ TNDIE LK E++KL + S +K+ + L+ +T D E R+ +
Sbjct: 903 SSLQKEIEERTNDIELLKSEQMKLQGIIRSLEKDIQGLKREIQERDETIQDKEKRIYDLK 962
Query: 215 EVKGEME-------FKIKELNKK 230
+ E+E +KIKEL K+
Sbjct: 963 KKNQELEKFKFVLDYKIKELKKQ 985
>gi|74815211|sp|Q8IBP1.1|YPF16_PLAF7 RecName: Full=Uncharacterized protein PF07_0086
Length = 3429
Score = 31.6 bits (70), Expect = 5.7, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 155 VIALSEAASLFRSSEKLTNDIEFLKQ------EKLKLYEELSSSQK----ENEILR---- 200
+I L+ ++F SS +T DI+F + K +Y +S K +NE +
Sbjct: 699 IIYLNNNKNIFNSSITITKDIKFKYKILNTSFYKNNIYMVISYFNKITVFKNEAIYFVLQ 758
Query: 201 -QTTGDLEVRLMQMNEVK-GEMEFKIKELNKKNQSESKLSDTIRELNEENIGLKQKVELQ 258
GD+ V ++NE K GE E KE+NK N+ +K+++ + ++NEE + ++V
Sbjct: 759 YDRNGDV-VSEQEVNEKKKGENEMN-KEVNKMNEEVNKMNEEVNKMNEEVNKMNKEVNKM 816
Query: 259 EAE 261
+ E
Sbjct: 817 DEE 819
>gi|25453063|sp|Q9GQF1.1|JIP3_DROME RecName: Full=JNK-interacting protein 3; AltName: Full=Protein
sunday driver
Length = 1227
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 210 LMQMNEVKGEMEFKIKELNKKNQSESKLSDTIRELNEENIGLKQKVELQEAENQ 263
+++++E+ GE+E +ELN QS +KL I EL +E K++V+ Q E +
Sbjct: 391 IVKVDELTGEVEIVREELNAMQQSRTKLRQRISELEDELKKAKEQVKQQNTEQE 444
Database: swissprot
Posted date: Jul 29, 2013 6:00 PM
Number of letters in database: 169,969,125
Number of sequences in database: 455,621
Lambda K H
0.313 0.130 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,646,898
Number of Sequences: 455621
Number of extensions: 3075656
Number of successful extensions: 15921
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 912
Number of HSP's that attempted gapping in prelim test: 13843
Number of HSP's gapped (non-prelim): 2878
length of query: 271
length of database: 169,969,125
effective HSP length: 115
effective length of query: 156
effective length of database: 117,572,710
effective search space: 18341342760
effective search space used: 18341342760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)