Query psy6276
Match_columns 271
No_of_seqs 167 out of 725
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:15:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m7n_A Putative uncharacterize 100.0 1.1E-44 3.6E-49 313.8 17.6 172 5-192 2-177 (179)
2 2nn6_I 3'-5' exoribonuclease C 100.0 1.5E-44 5.1E-49 320.3 9.3 182 4-189 19-203 (209)
3 2nn6_H Exosome complex exonucl 100.0 5.6E-36 1.9E-40 279.1 10.6 178 3-211 38-223 (308)
4 2ba0_A Archeal exosome RNA bin 100.0 2.9E-34 9.9E-39 257.4 14.7 179 4-210 2-181 (229)
5 2z0s_A Probable exosome comple 100.0 5.6E-35 1.9E-39 262.5 7.5 216 5-247 10-228 (235)
6 2je6_I RRP4, exosome complex R 100.0 3E-34 1E-38 260.6 11.2 216 3-247 15-235 (251)
7 2nn6_G Exosome complex exonucl 100.0 5.5E-33 1.9E-37 257.0 12.1 185 4-211 39-256 (289)
8 2ja9_A Exosome complex exonucl 99.8 2E-20 6.7E-25 161.8 11.8 129 64-210 1-137 (175)
9 2k52_A Uncharacterized protein 98.5 7.1E-07 2.4E-11 66.6 9.9 69 68-150 3-73 (80)
10 2k4k_A GSP13, general stress p 98.4 1.3E-06 4.5E-11 71.2 9.3 73 67-149 4-78 (130)
11 1go3_E DNA-directed RNA polyme 98.3 7.1E-07 2.4E-11 76.4 6.9 82 65-155 76-173 (187)
12 2khi_A 30S ribosomal protein S 98.3 1.8E-06 6.2E-11 68.8 8.7 87 54-149 14-102 (115)
13 2khj_A 30S ribosomal protein S 98.3 1.1E-06 3.8E-11 69.2 7.1 75 65-149 26-102 (109)
14 2cqo_A Nucleolar protein of 40 98.3 1.1E-06 3.7E-11 70.9 6.6 78 64-150 16-97 (119)
15 1kl9_A Eukaryotic translation 98.3 2.4E-06 8.1E-11 73.9 8.8 78 65-150 10-89 (182)
16 2eqs_A ATP-dependent RNA helic 98.3 2.5E-06 8.5E-11 66.8 7.9 78 65-149 7-85 (103)
17 2a19_A EIF-2- alpha, eukaryoti 98.2 5.7E-06 1.9E-10 71.0 8.7 79 65-151 10-90 (175)
18 3aev_A Translation initiation 98.0 2.1E-05 7.2E-10 72.0 9.8 79 64-150 5-85 (275)
19 1wi5_A RRP5 protein homolog; S 98.0 1.7E-05 5.7E-10 63.3 7.8 85 67-159 18-104 (119)
20 4ayb_E DNA-directed RNA polyme 98.0 2E-05 6.8E-10 67.0 8.2 83 64-155 75-172 (180)
21 1luz_A Protein K3, protein K2; 97.9 2.9E-05 1E-09 59.3 7.3 73 67-149 8-83 (88)
22 2c35_B Human RPB7, DNA-directe 97.9 2E-05 6.7E-10 66.7 6.2 82 65-155 76-171 (172)
23 1q8k_A Eukaryotic translation 97.8 4.3E-05 1.5E-09 71.0 8.1 77 66-150 9-87 (308)
24 3cw2_C Translation initiation 97.7 3.5E-05 1.2E-09 70.1 6.3 79 64-150 5-85 (266)
25 1y14_B B16, RPB7, DNA-directed 97.5 0.00022 7.5E-09 60.2 7.1 82 65-155 78-171 (171)
26 3h0g_G DNA-directed RNA polyme 97.3 7.9E-05 2.7E-09 63.3 2.3 82 64-155 78-172 (172)
27 2b8k_G B16, DNA-directed RNA p 97.1 0.00046 1.6E-08 61.0 5.1 83 65-157 78-173 (215)
28 3ayh_B DNA-directed RNA polyme 97.0 0.0011 3.7E-08 57.7 6.8 82 65-155 76-199 (203)
29 3go5_A Multidomain protein wit 97.0 0.0016 5.6E-08 59.6 8.2 70 69-156 151-223 (285)
30 4aid_A Polyribonucleotide nucl 97.0 0.00012 4.2E-09 75.0 0.0 73 67-149 634-707 (726)
31 2asb_A Transcription elongatio 96.8 0.0016 5.4E-08 59.0 5.9 74 65-151 2-83 (251)
32 3psi_A Transcription elongatio 96.7 0.0011 3.6E-08 71.5 4.9 78 66-152 898-977 (1219)
33 1hh2_P NUSA, N utilization sub 96.6 0.0035 1.2E-07 59.0 7.3 70 65-151 129-202 (344)
34 1k0r_A NUSA; two component arr 96.4 0.004 1.4E-07 59.1 5.8 113 64-189 124-269 (366)
35 3psf_A Transcription elongatio 96.3 0.00059 2E-08 72.4 0.0 78 66-152 901-980 (1030)
36 3cdi_A Polynucleotide phosphor 96.1 0.00097 3.3E-08 68.3 0.0 74 66-149 623-697 (723)
37 3bzc_A TEX; helix-turn-helix, 96.0 0.003 1E-07 65.3 3.0 75 67-151 651-727 (785)
38 2ckz_B C25, DNA-directed RNA p 95.7 0.022 7.7E-07 50.1 7.2 64 65-136 76-152 (218)
39 1e3p_A Guanosine pentaphosphat 95.6 0.0012 4E-08 68.1 -1.7 75 66-149 663-741 (757)
40 2bx2_L Ribonuclease E, RNAse E 94.2 0.13 4.5E-06 50.8 8.4 74 67-148 42-126 (517)
41 3d0f_A Penicillin-binding 1 tr 92.7 0.47 1.6E-05 36.5 7.9 61 66-134 29-93 (106)
42 3v2d_0 50S ribosomal protein L 92.5 0.22 7.6E-06 37.9 5.5 56 3-61 27-84 (85)
43 3go5_A Multidomain protein wit 92.4 0.49 1.7E-05 43.1 8.8 148 68-250 67-238 (285)
44 2zjr_T 50S ribosomal protein L 90.9 0.29 1E-05 37.8 4.7 56 3-61 27-84 (91)
45 3r8s_W 50S ribosomal protein L 90.4 0.46 1.6E-05 35.5 5.2 56 3-60 18-75 (76)
46 2bh8_A 1B11; transcription, mo 85.1 1.8 6.1E-05 33.2 5.9 38 67-112 58-95 (101)
47 2id0_A Exoribonuclease 2; RNAs 80.3 3.2 0.00011 41.7 7.1 74 67-147 555-642 (644)
48 1y71_A Kinase-associated prote 76.6 7.2 0.00025 31.8 6.8 36 68-107 8-52 (130)
49 2ftc_O L27MT, MRP-L27, mitocho 74.7 2.4 8.1E-05 31.1 3.1 41 3-43 27-69 (69)
50 2vnu_D Exosome complex exonucl 65.8 6.3 0.00021 40.4 5.2 69 72-147 671-759 (760)
51 2wp8_J Exosome complex exonucl 56.7 15 0.00051 38.8 6.1 70 71-147 887-976 (977)
52 2ja9_A Exosome complex exonucl 52.3 13 0.00044 31.4 4.0 31 64-95 48-78 (175)
53 3bbo_X Ribosomal protein L27; 51.9 0.84 2.9E-05 39.5 -3.5 56 3-61 84-141 (198)
54 1yez_A MM1357; MAR30, autostru 47.9 57 0.002 22.6 6.3 22 69-90 45-66 (68)
55 1vk6_A NADH pyrophosphatase; 1 45.6 16 0.00055 32.4 3.8 79 158-247 109-190 (269)
56 2qf4_A Cell shape determining 44.6 25 0.00087 29.2 4.6 63 74-136 47-121 (172)
57 1yvc_A MRR5; structure, autost 41.6 62 0.0021 22.6 5.7 22 69-90 47-68 (70)
58 2j5u_A MREC protein; bacterial 41.5 25 0.00085 31.1 4.3 62 73-134 108-179 (255)
59 2kdx_A HYPA, hydrogenase/ureas 41.5 10 0.00034 29.6 1.5 27 155-181 72-100 (119)
60 2rf4_A DNA-directed RNA polyme 40.7 21 0.00072 30.8 3.6 39 65-111 124-162 (214)
61 3qt1_I DNA-directed RNA polyme 38.4 9 0.00031 31.1 0.8 25 158-182 26-57 (133)
62 2dgy_A MGC11102 protein; EIF-1 37.7 25 0.00086 27.6 3.3 56 65-136 9-65 (111)
63 3u50_C Telomerase-associated p 34.5 36 0.0012 28.6 4.0 54 153-212 39-94 (172)
64 3j20_Y 30S ribosomal protein S 33.7 15 0.00052 24.8 1.2 26 156-181 19-47 (50)
65 2oqk_A Putative translation in 31.3 1.5E+02 0.0052 23.1 6.9 56 65-136 26-82 (117)
66 4fu6_A PC4 and SFRS1-interacti 30.4 17 0.00059 29.5 1.3 16 120-135 18-33 (153)
67 2z1c_A Hydrogenase expression/ 29.5 88 0.003 22.8 4.9 39 76-134 7-45 (75)
68 3a43_A HYPD, hydrogenase nicke 29.1 21 0.00072 28.8 1.6 26 155-180 69-116 (139)
69 3h0g_L DNA-directed RNA polyme 29.0 18 0.00062 25.8 1.0 25 158-182 23-49 (63)
70 1d7q_A Translation initiation 28.7 96 0.0033 25.4 5.5 55 66-136 26-81 (143)
71 1a62_A RHO; transcription term 28.4 41 0.0014 26.9 3.2 44 54-97 77-123 (130)
72 3i4o_A Translation initiation 27.9 65 0.0022 23.7 4.0 49 74-136 16-65 (79)
73 2npb_A Selenoprotein W; struct 26.9 66 0.0023 24.4 4.0 50 171-226 7-62 (96)
74 1ah9_A IF1, initiation factor 26.8 50 0.0017 23.3 3.1 49 74-136 8-57 (71)
75 3dm3_A Replication factor A; p 26.7 2E+02 0.007 21.6 7.0 25 124-148 66-92 (105)
76 3h0g_I DNA-directed RNA polyme 26.4 18 0.00061 28.2 0.6 26 158-183 6-38 (113)
77 3dex_A SAV_2001; alpha-beta pr 25.5 79 0.0027 24.7 4.2 49 171-225 17-70 (107)
78 3cng_A Nudix hydrolase; struct 25.4 59 0.002 26.3 3.7 81 157-247 4-91 (189)
79 1jt8_A EIF-1A, probable transl 24.8 52 0.0018 25.4 3.0 57 66-137 13-72 (102)
80 1xjv_A Protection of telomeres 24.7 1.9E+02 0.0064 25.5 7.2 17 120-136 63-80 (294)
81 4ayb_P DNA-directed RNA polyme 24.5 23 0.00079 24.1 0.8 25 158-182 5-34 (48)
82 2jro_A Uncharacterized protein 24.4 24 0.00082 26.3 1.0 44 202-251 20-63 (78)
83 2ojl_A Hypothetical protein; B 24.2 67 0.0023 25.1 3.6 50 171-226 13-67 (108)
84 1twf_L ABC10-alpha, DNA-direct 23.5 32 0.0011 24.8 1.5 24 157-180 29-54 (70)
85 3qby_A Hepatoma-derived growth 23.1 28 0.00096 26.1 1.2 15 121-135 2-16 (94)
86 2lcq_A Putative toxin VAPC6; P 23.0 21 0.00072 29.0 0.5 23 158-180 134-157 (165)
87 2k52_A Uncharacterized protein 22.8 66 0.0023 22.7 3.1 24 67-90 45-68 (80)
88 2oka_A Hypothetical protein; P 22.3 56 0.0019 25.3 2.8 50 171-226 10-64 (104)
89 2fa8_A Hypothetical protein AT 21.6 54 0.0018 25.4 2.6 49 171-225 12-65 (105)
90 2p0g_A Selenoprotein W-related 21.3 59 0.002 25.2 2.7 50 171-226 8-62 (105)
91 1vq8_Z 50S ribosomal protein L 20.3 36 0.0012 25.4 1.2 23 158-180 29-54 (83)
No 1
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=100.00 E-value=1.1e-44 Score=313.80 Aligned_cols=172 Identities=27% Similarity=0.347 Sum_probs=159.9
Q ss_pred CeEecCCcccCCCCCeeeCCCEEEeCCEEEEEEeeEEEEeccccCCCcceEEEEeeCCCccccCCCCCEEEEEEEEEecc
Q psy6276 5 PICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEVIVPTPGDVVTARIMAVQQH 84 (271)
Q Consensus 5 ~iVlPGD~L~~~eE~~~~G~GtY~~~g~I~ASv~G~v~i~~~~~~~~~~~~I~V~P~~~~~yiP~vGDIVIGrVt~V~~~ 84 (271)
++|+|||.|+..++ |.+|+|||.++|.||||++|.+.+.+ ++++|+|....+|+|+ ||+|+|+|++|.+.
T Consensus 2 ~iV~PGd~l~~~~~-~~~G~Gty~~~~~i~as~~G~v~~~~--------~~v~V~~~~~~~y~p~-GdiV~G~V~~V~~~ 71 (179)
T 3m7n_A 2 RFVMPGDRIGSAEE-YVKGEGVYEEGGELFAAVAGKLIIKD--------RVAKVESISPIPEIVK-GDVVLGRVVDLRNS 71 (179)
T ss_dssp CEECTTCEEEETTT-SEECTTEEEETTEEEESSSEEEEEET--------TEEEEEESSCCCCCCT-TCEEEEEEEEECSS
T ss_pred eEEcCCCCCCCCCC-EeccCCEEEeCCEEEEEEEEEEEEeC--------CEEEEEECCCCcccCC-CCEEEEEEEEEeCC
Confidence 69999999999888 99999999999999999999999865 7999999755679999 99999999999999
Q ss_pred eEEEEEeee--cCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCCCCceeeeeccCCCeeEEEEc-c
Q psy6276 85 LCKAHVISV--GNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELHSYQLSTAENELGVVIALS-E 160 (271)
Q Consensus 85 ~a~VdI~~v--~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d~~~~~LST~~~eLGVV~A~c-~ 160 (271)
.|+|+|.++ +.+++..++.|+||++|++.++. .+|+++|++||+|+|+ ++ +.+.|||++++||||+|.| +
T Consensus 72 ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~--~~~~~~~~~GD~V~akVi~----~~i~LS~k~~~lGvv~a~~~~ 145 (179)
T 3m7n_A 72 IALIEVSSKKGENRGPSNRGIGILHVSNVDEGYV--KEISEAVGYLDILKARVIG----DNLRLSTKEEEMGVLRALCSN 145 (179)
T ss_dssp EEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCC--SSGGGTCCTTCEEEEEEEE----TTTEEECCSTTCEEEECBCTT
T ss_pred cEEEEEccccCcccccccCeeEEEEHHHcCcchh--hCHhhcCCCCCEEEEEEEC----CeEEEEEecCCCCEEEecccc
Confidence 999999998 55677789999999999987654 4899999999999999 88 5799999999999999999 8
Q ss_pred CCCeeEeccCccCchhhhhhhhhhhHHHhccc
Q psy6276 161 AASLFRSSEKLTNDIEFLKQEKLKLYEELSSS 192 (271)
Q Consensus 161 cG~~Mvp~s~~~~c~~~~~~e~rKla~~~~s~ 192 (271)
||++|+|.|..++||+|+..|.||+|++++..
T Consensus 146 ~g~~m~~~~~~~~cp~~g~~e~RKva~~y~~~ 177 (179)
T 3m7n_A 146 CKTEMVREGDILKCPECGRVEKRKISTDYGKG 177 (179)
T ss_dssp TCCBCEECSSSEECSSSCCEECCCBCTTTTTT
T ss_pred cCCceEECCCEEECCCCCCEEEEecccccccc
Confidence 99999999999999999999999999998765
No 2
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=100.00 E-value=1.5e-44 Score=320.28 Aligned_cols=182 Identities=37% Similarity=0.653 Sum_probs=160.8
Q ss_pred CCeEecCCcccCCCCCeeeCCCEEEeCCEEEEEEeeEEEEeccccCCCcceEEEEeeCCCccccCCCCCEEEEEEEEEec
Q psy6276 4 PPICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEVIVPTPGDVVTARIMAVQQ 83 (271)
Q Consensus 4 ~~iVlPGD~L~~~eE~~~~G~GtY~~~g~I~ASv~G~v~i~~~~~~~~~~~~I~V~P~~~~~yiP~vGDIVIGrVt~V~~ 83 (271)
+.+|+|||.|+..++ |++|+|||+++|+||||++|.+.++. .++.+++|+|+|....+|.|++||+|+|+|+++.+
T Consensus 19 ~~iV~PGd~l~~~~~-~~~G~Gty~~~g~I~Asv~G~v~~~~---~~~~~~vi~V~p~~~~~y~p~vGDvV~G~V~~v~~ 94 (209)
T 2nn6_I 19 VRYCIPGERLCNLEE-GSPGSGTYTRHGYIFSSLAGCLMKSS---ENGALPVVSVVRETESQLLPDVGAIVTCKVSSINS 94 (209)
T ss_dssp -CCCCTTCEEEETTT-CCCSSSCEEETTEEECCSCSCBCCCB---CTTSSBC-CBCCSCCCCCCCCTTCEEEEEEEEECS
T ss_pred CcEEcCCCCCCCCCC-eeecCCEEEECCEEEEEEEEEEEEec---cCCcccEEEEecCCCCcCCCCCCCEEEEEEEEEEC
Confidence 479999999998888 99999999999999999999987653 11235679999975446999999999999999999
Q ss_pred ceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCCCC-ceeeeeccCCCeeEEEEccC
Q psy6276 84 HLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELH-SYQLSTAENELGVVIALSEA 161 (271)
Q Consensus 84 ~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d~~-~~~LST~~~eLGVV~A~c~c 161 (271)
..|+|+|.+++++.|..+|.|+||++|+++++.++.+|+++|++||+|+|| +++++.. .|.|||++++||||+|+|..
T Consensus 95 ~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i~LS~k~~~lGVv~A~c~~ 174 (209)
T 2nn6_I 95 RFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSES 174 (209)
T ss_dssp SEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEEEEEETTTTEEEEECCSSSCEECCCBCSS
T ss_pred ceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEEEEEeCCCCeEEEEEecCCCcEEEEEcCC
Confidence 999999999999999999999999999999888878999999999999999 9997764 59999999999999999966
Q ss_pred CCeeEeccC-ccCchhhhhhhhhhhHHHh
Q psy6276 162 ASLFRSSEK-LTNDIEFLKQEKLKLYEEL 189 (271)
Q Consensus 162 G~~Mvp~s~-~~~c~~~~~~e~rKla~~~ 189 (271)
|.+|+|++| .+.||+|+..|+||+|+.+
T Consensus 175 g~~m~~~~~~~m~cp~cg~~E~RKva~~~ 203 (209)
T 2nn6_I 175 GIQMVPISWCEMQCPKTHTKEFRKVARVQ 203 (209)
T ss_dssp SCBCEEEETTEEECTTTTCCBCCCC----
T ss_pred CCEEEEccCCEEECCCCCCEEeeccCCCC
Confidence 999999996 6999999999999999985
No 3
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=5.6e-36 Score=279.12 Aligned_cols=178 Identities=22% Similarity=0.277 Sum_probs=143.3
Q ss_pred CCCeEecCCcccCCCCCeeeCCCEEEeCCEEEEEEeeEEEEeccccCCCcceEEEEeeCCCccccCCCCCEEEEEEEEEe
Q psy6276 3 NPPICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEVIVPTPGDVVTARIMAVQ 82 (271)
Q Consensus 3 ~~~iVlPGD~L~~~eE~~~~G~GtY~~~g~I~ASv~G~v~i~~~~~~~~~~~~I~V~P~~~~~yiP~vGDIVIGrVt~V~ 82 (271)
++++|+|||.|+..++ |.+|+|||.++|+||||++|.+...+ +.|+|.|. +.+|+|++||+|+|+|+++.
T Consensus 38 ~~~iVlPGd~L~~~~~-~~~G~Gty~~~g~I~Asv~G~v~~~~--------~~vsV~p~-~~rY~P~vGDvViG~Vt~V~ 107 (308)
T 2nn6_H 38 KKHLVVPGDTITTDTG-FMRGHGTYMGEEKLIASVAGSVERVN--------KLICVKAL-KTRYIGEVGDIVVGRITEVQ 107 (308)
T ss_dssp --CBCCTTCBCCCCTT-CCBCTTEEECSSSEEECSSEEEEEET--------TEEEEEES-SCCCCCCSSBCCCEEEEEEE
T ss_pred CCcEEeCCCCCCCCCC-EeecCCeEEECCEEEEEEEEEEEecC--------CEEEEeeC-CCccCCCCCCEEEEEEEEEe
Confidence 4579999999998787 99999999999999999999998765 79999996 68999999999999999999
Q ss_pred cceEEEEEeeecCcccC---Cce-eeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCCCCceeeeeccCCCeeEEE
Q psy6276 83 QHLCKAHVISVGNTALS---RTF-RALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELHSYQLSTAENELGVVIA 157 (271)
Q Consensus 83 ~~~a~VdI~~v~~~~L~---~~f-~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d~~~~~LST~~~eLGVV~A 157 (271)
+++|+|+|.+..+..+. ..| .|++|.+++ .|..+|+++|++||+|+|| +++++...+.|||++++||++.+
T Consensus 108 ~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~----~D~~~m~~~l~vGDlV~ArVisv~~~~~i~LStr~~~LGkL~~ 183 (308)
T 2nn6_H 108 QKRWKVETNSRLDSVLLLSSMNLPGGELRRRSA----EDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQ 183 (308)
T ss_dssp TTEEEEECSSSSCEEEESSCCC-----------------CHHHHHHSCSSCEECCEEEEEETTTEEEEECCSSTTCEECS
T ss_pred CceEEEEECCCcCCceechhhccccceeecccc----hhhhhhhccCCCCCEEEEEEEEcCCCCCEEEEecCcCCcccCC
Confidence 99999999976655333 235 467776553 3456899999999999999 89876678999999999998887
Q ss_pred Ec--cCCCeeEeccC-ccCchhhhhhhhhhhHHHhcccccceeeeeeccCceEEEeE
Q psy6276 158 LS--EAASLFRSSEK-LTNDIEFLKQEKLKLYEELSSSQKENEILRQTTGDLEVRLM 211 (271)
Q Consensus 158 ~c--~cG~~Mvp~s~-~~~c~~~~~~e~rKla~~~~s~~~~~~~~~~~~~~~~~~~~ 211 (271)
-| .+...|+|.+| .+.|+.| .++|+.|.||++||+..
T Consensus 184 G~v~~vs~~lv~r~~~~l~~l~~-----------------g~eI~vG~NG~IWi~~~ 223 (308)
T 2nn6_H 184 GVLVQVSPSLVKRQKTHFHDLPC-----------------GASVILGNNGFIWIYPT 223 (308)
T ss_dssp SCEEECCTTSCCCSTTCSCCCBT-----------------TBEEEEETTTEEEEECC
T ss_pred eEEEEEChhheechhheEecCCC-----------------CcEEEEeCCCEEEEcCC
Confidence 77 44778888875 6667654 48999999999999975
No 4
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=2.9e-34 Score=257.36 Aligned_cols=179 Identities=19% Similarity=0.225 Sum_probs=143.7
Q ss_pred CCeEecCCcccCCCCCeeeCCCEEEeCCEEEEEEeeEEEEeccccCCCcceEEEEeeCCCccccCCCCCEEEEEEEEEec
Q psy6276 4 PPICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEVIVPTPGDVVTARIMAVQQ 83 (271)
Q Consensus 4 ~~iVlPGD~L~~~eE~~~~G~GtY~~~g~I~ASv~G~v~i~~~~~~~~~~~~I~V~P~~~~~yiP~vGDIVIGrVt~V~~ 83 (271)
+++|+|||.|+. ++ |.+|+|||.++|+||||++|.+..++ +.++|.|. +.+|.|++||+|+|+|+++.+
T Consensus 2 ~~iV~PGd~l~~-~~-~~~G~Gty~~~g~i~as~~G~v~~~~--------~~v~V~p~-~~~y~p~~GDiV~G~V~~v~~ 70 (229)
T 2ba0_A 2 RKIVLPGDLLST-NP-RAAGYGTYVEGGKVYAKIIGLFDQTE--------THVRVIPL-KGRYTPSVGDVVIGIIREVAA 70 (229)
T ss_dssp CCEECTTCEEES-CT-TSBCTTEEEETTEEEECSSEEEEECS--------SCEEEEEC-SSSCCCCTTCEEEEEEEEECS
T ss_pred CCEEcCCCCccc-CC-eEecCCEEEeCCEEEEEEEEEEEEeC--------CEEEEEeC-CCcccCCCCCEEEEEEEEEeC
Confidence 359999999985 55 99999999999999999999999886 57999997 678999999999999999999
Q ss_pred ceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCCCCceeeeeccCCCeeEEEEccCC
Q psy6276 84 HLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELHSYQLSTAENELGVVIALSEAA 162 (271)
Q Consensus 84 ~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d~~~~~LST~~~eLGVV~A~c~cG 162 (271)
+.|+|+|. .++.|+||.++++. +.+..+|+++|++||+|+|| +++++...+.|||++++||++. +
T Consensus 71 ~~a~V~I~--------~~~~g~l~isev~~-~~~~~~~~~~l~~GD~V~arVi~v~~~~~i~LS~r~~~lG~L~-----~ 136 (229)
T 2ba0_A 71 NGWAVDIY--------SPYQAFLPVSENPE-MKPNKKPNEVLDIGDAIIAKVLNIDPKMKVTLTMKDRICRPIR-----F 136 (229)
T ss_dssp SEEEEECS--------SSSCEEEEGGGCTT-CCTTSCGGGTCCTTCEEEEEEEEECTTCCEEEECCSSSCEEES-----S
T ss_pred CeEEEEeC--------CCeEEEEEHHHccc-cccccchhcccCCCCEEEEEEEEECCCCcEEEEEccccCCccc-----C
Confidence 99999984 57999999999982 33566899999999999999 9987767899999999999772 4
Q ss_pred CeeEeccCccCchhhhhhhhhhhHHHhcccccceeeeeeccCceEEEe
Q psy6276 163 SLFRSSEKLTNDIEFLKQEKLKLYEELSSSQKENEILRQTTGDLEVRL 210 (271)
Q Consensus 163 ~~Mvp~s~~~~c~~~~~~e~rKla~~~~s~~~~~~~~~~~~~~~~~~~ 210 (271)
..|+.++..+.=...++. -.+...|+ ....|+|+.|.||++||+.
T Consensus 137 G~v~~vs~~~v~rl~~~~--~~~l~~l~-~~~~~ei~vG~NG~IWi~~ 181 (229)
T 2ba0_A 137 GRIVAINPARVPRVIGKK--GSMIKLLK-SELDVQIVVGQNGLIWVNG 181 (229)
T ss_dssp SEEEECCGGGHHHHHCGG--GHHHHHHH-HHHTCEEEECTTSEEEEES
T ss_pred CEEEEECHHHhHHHhcCC--chHHHHhc-ccCCeEEEEECCcEEEEeC
Confidence 455555531110000000 01333342 3468999999999999995
No 5
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=100.00 E-value=5.6e-35 Score=262.50 Aligned_cols=216 Identities=18% Similarity=0.198 Sum_probs=115.3
Q ss_pred CeEecCCcccCCCCCeeeCCCEEEeCCEEEEEEeeEEEEeccccCCCcceEEEEeeCCCccccCCCCCEEEEEEEEEecc
Q psy6276 5 PICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEVIVPTPGDVVTARIMAVQQH 84 (271)
Q Consensus 5 ~iVlPGD~L~~~eE~~~~G~GtY~~~g~I~ASv~G~v~i~~~~~~~~~~~~I~V~P~~~~~yiP~vGDIVIGrVt~V~~~ 84 (271)
.+|+|||.|+. ++ |.+|+|||.++|.|||+++|.+..++ +++.++|+|. +.+|.|++||+|+|+|+++.++
T Consensus 10 ~iV~PGd~l~~-~~-~~~G~Gty~~~~~I~Asv~G~v~~~~------~~~~vsV~p~-~~~y~p~~GDiV~G~V~~v~~~ 80 (235)
T 2z0s_A 10 RIVVPGEPLPE-EV-EASPPYVIDYKGVKRATVVGLLREKG------DGGGRAFVKL-KEIYVPQAGDVVIGLIQSVGIM 80 (235)
T ss_dssp -----------------------------------------------------------CCCCCCTTCCEEEEEEEECSS
T ss_pred cEEeCCCCccc-Cc-eEcCCCEEEECCEEEEEEeEEEEEeC------CccEEEEEeC-CCccCCCCCCEEEEEEEEEeCC
Confidence 69999999986 45 99999999999999999999998876 3458999996 6789999999999999999999
Q ss_pred eEEEEEeeecCcccCCceeeEEecccccc--chhhhHhhhcCCCCCCEEEEE-EecCCCCceeeeeccCCCeeEEEEccC
Q psy6276 85 LCKAHVISVGNTALSRTFRALLRRENVRA--TEIDRIEMYKCYRPGDIILAR-LPLKELHSYQLSTAENELGVVIALSEA 161 (271)
Q Consensus 85 ~a~VdI~~v~~~~L~~~f~GiLr~sdvr~--te~d~~~m~~~f~~GDIV~Ak-iS~~d~~~~~LST~~~eLGVV~A~c~c 161 (271)
.|+|+|. .++.|+||.+++.. ++.+..+|+++|++||+|+|+ +++++...+.|||+++.||++.
T Consensus 81 ~~~V~I~--------~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~~~i~LS~k~~~lG~l~----- 147 (235)
T 2z0s_A 81 NWFVDIN--------SPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKTRSPLLTVQGEGLGRIV----- 147 (235)
T ss_dssp EEEEECS--------SSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTTSCEEEECCSSSCEECC-----
T ss_pred eEEEEeC--------CCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCCCcEEEEEecccCcccc-----
Confidence 9999984 57999999999953 556778999999999999999 9998767899999999999762
Q ss_pred CCeeEeccCccCchhhhhhhhhhhHHHhcccccceeeeeeccCceEEEeEeeccccceeeeeehhhhccccCchhhhhHH
Q psy6276 162 ASLFRSSEKLTNDIEFLKQEKLKLYEELSSSQKENEILRQTTGDLEVRLMQMNEVKGEMEFKIKELNKKNQSESKLSDTI 241 (271)
Q Consensus 162 G~~Mvp~s~~~~c~~~~~~e~rKla~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (271)
|+.++.++....=...++ +..+...|+ +...|+|+.|.||++||++-...+..- ..--|+....+.. .+.|.|.+
T Consensus 148 gG~vv~vs~~~~~rl~~~--~~~~l~~l~-~~~~~~i~vG~NG~IWi~~~~~~~~~~-~~~ai~~~e~~~~-~~~l~~~v 222 (235)
T 2z0s_A 148 RGKIVEISPAKVPRVIGR--KMSMLKTLE-EKTECKIFVARNGRIHLECPNEDLEAI-AVMAIKIIDEEAY-TSGLTKRI 222 (235)
T ss_dssp SSEEEECCGGGSGGGTCG--GGHHHHHHH-HHHCCEEEEETTTEEEEECSCHHHHHH-HHHHHHHHHHCSC-CTTCHHHH
T ss_pred CCEEEEECHHHhHHHhcC--cchHHHHhc-ccCCeEEEEeCCCEEEEecCCHHHHHH-HHHHHHHHHhhhh-hhhHHHHH
Confidence 445555542111000010 111444453 357999999999999999842211110 0011333333333 55666666
Q ss_pred Hhhhcc
Q psy6276 242 RELNEE 247 (271)
Q Consensus 242 ~~~~~~ 247 (271)
+++-++
T Consensus 223 ~~~l~~ 228 (235)
T 2z0s_A 223 IKFIEE 228 (235)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665333
No 6
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=100.00 E-value=3e-34 Score=260.56 Aligned_cols=216 Identities=18% Similarity=0.224 Sum_probs=144.9
Q ss_pred CCCeEecCCcccCCCCCeeeCC--CEEEeCCEEEEEEeeEEEEeccccCCCcceEEEEeeCCCccccCCCCCEEEEEEEE
Q psy6276 3 NPPICIPGQRICQLDSDIVGGR--GTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEVIVPTPGDVVTARIMA 80 (271)
Q Consensus 3 ~~~iVlPGD~L~~~eE~~~~G~--GtY~~~g~I~ASv~G~v~i~~~~~~~~~~~~I~V~P~~~~~yiP~vGDIVIGrVt~ 80 (271)
++++|+|||.|+. ++ |.+|+ |||.++|.|||+++|.+..++ +.++|+|....+|.|++||+|+|+|++
T Consensus 15 ~~~iV~PGd~l~~-~~-~~~G~~~Gty~~~g~i~as~~G~v~~~~--------~~v~V~p~~~~~y~p~~GDiV~G~V~~ 84 (251)
T 2je6_I 15 PRSIVVPGELLAE-GE-FQIPWSPYILKINSKYYSTVVGLFDVKD--------TQFEVIPLEGSFYYPKINDIVIGLVED 84 (251)
T ss_dssp SSCEECTTCEEEE-EC-CCCCCCTTEEEETTEEEECSSEEEEEET--------TEEEEEESCCSCCCCCTTCEEEEEEEE
T ss_pred CCcEEcCCCCCcc-CC-eeeCCCCCEEEECCEEEEEEEEEEEEeC--------CEEEEEECCCcccCCCCCCEEEEEEEE
Confidence 4689999999996 45 99999 999999999999999999886 689999975459999999999999999
Q ss_pred EecceEEEEEeeecCcccCCceeeEEeccccccchhhh-HhhhcCCCCCCEEEEE-EecCCCCceeeeeccCCCeeEEEE
Q psy6276 81 VQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDR-IEMYKCYRPGDIILAR-LPLKELHSYQLSTAENELGVVIAL 158 (271)
Q Consensus 81 V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~-~~m~~~f~~GDIV~Ak-iS~~d~~~~~LST~~~eLGVV~A~ 158 (271)
+.+..|+|+|. .++.|+||.++++..+.+. .+|+++|++||+|+|| +++++...+.|||++++||++.
T Consensus 85 v~~~ga~VdI~--------~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~~~~i~LS~r~~~lG~L~-- 154 (251)
T 2je6_I 85 VEIYGWVVDIK--------APYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDRSIDPVLSVKGKDLGRVS-- 154 (251)
T ss_dssp ECSSEEEEECS--------SSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEETTEEEEEECCSTTCEECC--
T ss_pred EeCceEEEEcC--------CCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECCCCcEEEEEccccCCccc--
Confidence 99999999984 5799999999998544433 7899999999999999 9987667899999999999552
Q ss_pred ccCCCeeEeccCccCchh-hhhhhhhhhHHHhcccccceeeeeeccCceEEEeEeeccccceeeeeehhhhccccCchhh
Q psy6276 159 SEAASLFRSSEKLTNDIE-FLKQEKLKLYEELSSSQKENEILRQTTGDLEVRLMQMNEVKGEMEFKIKELNKKNQSESKL 237 (271)
Q Consensus 159 c~cG~~Mvp~s~~~~c~~-~~~~e~rKla~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (271)
+..++.++... ++. .++ +-.+...|+ ....|+|+.|.||++||++-......- ..--|+....... .+.|
T Consensus 155 ---~G~v~~vs~~~-v~rl~~~--~~~~l~~l~-~~~~~ei~vG~NG~IWi~~~~~~~~~~-~~~aI~~~e~~~~-~~~l 225 (251)
T 2je6_I 155 ---NGIVIDIMPVK-VPRVIGK--NKSMYETLT-SKSGCSIFVANNGRIWATCPSRFSEEI-LIEAIRKIENESH-IKGL 225 (251)
T ss_dssp ---SSCEEECCGGG-HHHHHCG--GGHHHHHHH-TTC---CEECTTSEEEC-----CTTCC-THHHHTTTTTTTT-CC--
T ss_pred ---CCEEEEECHHH-hHHHhcC--cchHHHHhc-ccCCeEEEEECCcEEEEeCCCHHHHHH-HHHHHHHHHhhhh-hhhH
Confidence 33444443211 100 000 011344453 357999999999999999853321110 0011222322222 4567
Q ss_pred hhHHHhhhcc
Q psy6276 238 SDTIRELNEE 247 (271)
Q Consensus 238 ~~~~~~~~~~ 247 (271)
.|.++++-++
T Consensus 226 ~~~v~~~l~~ 235 (251)
T 2je6_I 226 TDRIKQFIEE 235 (251)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
Confidence 7777776444
No 7
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=100.00 E-value=5.5e-33 Score=256.96 Aligned_cols=185 Identities=19% Similarity=0.164 Sum_probs=134.6
Q ss_pred CCeEecCCcccCCC-----------------------CCeee--CCCEEEeCCEEEEEEeeEEEEeccccCCCcceEEEE
Q psy6276 4 PPICIPGQRICQLD-----------------------SDIVG--GRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEV 58 (271)
Q Consensus 4 ~~iVlPGD~L~~~e-----------------------E~~~~--G~GtY~~~g~I~ASv~G~v~i~~~~~~~~~~~~I~V 58 (271)
+.+|+|||.|+..+ + |++ |+|||.+++.|||+++|.+..+++.. ....+.++|
T Consensus 39 ~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~~~~~G~Gty~~~~~I~as~aG~l~~~~~~~-~~~~~~v~V 116 (289)
T 2nn6_G 39 GQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSR-VRVVCGPGLRRCGDRLLVTKCGRLRHKEPGS-GSGGGVYWV 116 (289)
T ss_dssp SSBCCSSEEECCSCSCCEECSSEEECC------------------------CCCEEECSCCEEEEECCTT-TSSCCEEEE
T ss_pred CcEEeCCCCcCccccccccccccccccccccccccCcc-eEEccCCCeEEECCEEEEEEeEeEEeccCCc-cCccceEEE
Confidence 36899999999875 5 889 99999999999999999999886100 001148999
Q ss_pred eeCCCccccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccc-cchhhhHhhhcCCCCCCEEEEE-Ee
Q psy6276 59 SSYKKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVR-ATEIDRIEMYKCYRPGDIILAR-LP 136 (271)
Q Consensus 59 ~P~~~~~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr-~te~d~~~m~~~f~~GDIV~Ak-iS 136 (271)
.|. +++|+|++||+|||+|+++.+++|+|||. .+|.|+||.++++ ++ .+|+++|++||||+|| ++
T Consensus 117 ~~~-~~rYiP~vGDiVIG~Vt~v~~~~~~VdI~--------s~~~a~L~~~~f~Gat----k~~r~~f~~GDlV~ArV~s 183 (289)
T 2nn6_G 117 DSQ-QKRYVPVKGDHVIGIVTAKSGDIFKVDVG--------GSEPASLSYLSFEGAT----KRNRPNVQVGDLIYGQFVV 183 (289)
T ss_dssp ECC-CSSCCCCSSEEEEEEEEEEETTEEEEECS--------SSSCCCEESCSSSCCS----SCSSSSSCTTCEEEEEEEE
T ss_pred Eec-CCCCCCCCCCEEEEEEEEEeCcEEEEEEC--------CCceeEEehhhcCcch----hhhhhhcCCCCEEEEEEEE
Confidence 997 57899999999999999999999999997 4688999998877 44 3799999999999999 99
Q ss_pred cCCCCceeeee-----ccCCCeeE-EEEccCCCeeEeccCccCchhhhhhhhhhhHHHhcccccceeeeeeccCceEEEe
Q psy6276 137 LKELHSYQLST-----AENELGVV-IALSEAASLFRSSEKLTNDIEFLKQEKLKLYEELSSSQKENEILRQTTGDLEVRL 210 (271)
Q Consensus 137 ~~d~~~~~LST-----~~~eLGVV-~A~c~cG~~Mvp~s~~~~c~~~~~~e~rKla~~~~s~~~~~~~~~~~~~~~~~~~ 210 (271)
+++...+.||| ++++||+| . ++.|+.++..+ ++..-. .+..+...|+ +...|||+.|.||++||++
T Consensus 184 ~~~~~~~eLsc~~~~~k~~~lG~L~~-----~G~l~~Vs~~l-vrrl~~-~~~~~l~~L~-~~~~~eI~vG~NG~IWI~~ 255 (289)
T 2nn6_G 184 ANKDMEPEMVCIDSCGRANGMGVIGQ-----DGLLFKVTLGL-IRKLLA-PDCEIIQEVG-KLYPLEIVFGMNGRIWVKA 255 (289)
T ss_dssp CCTTSCCEEECSBTTTTBCCCCSCCS-----SCEEECCCHHH-HHHHHC-TTCSHHHHTT-CSSSCCCEEETTTEEEECC
T ss_pred cCCCCceEEEecccccccccCCEecC-----CeEEEEEChHH-hhhhhc-CchhHHHHhc-ccCCeEEEEECCcEEEEec
Confidence 98777899998 88999998 4 55666666211 000000 0011333453 4579999999999999996
Q ss_pred E
Q psy6276 211 M 211 (271)
Q Consensus 211 ~ 211 (271)
-
T Consensus 256 ~ 256 (289)
T 2nn6_G 256 K 256 (289)
T ss_dssp S
T ss_pred C
Confidence 3
No 8
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=99.83 E-value=2e-20 Score=161.79 Aligned_cols=129 Identities=13% Similarity=0.155 Sum_probs=99.1
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEEeeecCcccCC-ceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCCCC
Q psy6276 64 EVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSR-TFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELH 141 (271)
Q Consensus 64 ~~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~-~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d~~ 141 (271)
.+|+|++||+|+|+|+++.++.|+|||. . ++.|+||.+++. ....+|+++|++||+|+|| ++++...
T Consensus 1 krY~P~~gDvViG~V~~v~~~~~~VdI~--------~~~~~a~L~~s~~~---g~~k~~r~~l~~GDlV~ArV~~~~~~~ 69 (175)
T 2ja9_A 1 KRYIPSVNDFVIGVIIGTFSDSYKVSLQ--------NFSSSVSLSYMAFP---NASKKNRPTLQVGDLVYARVCTAEKEL 69 (175)
T ss_dssp CCCCCCTTCEEEEEEEEECSSEEEEESS--------TTSCCEEEETTSST---TCCSSSCCCCCTTCEEEEEEEECCTTS
T ss_pred CCccCCCcCEEEEEEEEEECcEEEEEEC--------CCCccEEEEHHHCC---chhhhhhccCCCCCEEEEEEEEecCCC
Confidence 3799999999999999999999999996 4 789999999876 2234799999999999999 8876556
Q ss_pred ceeee------eccCCCeeEEEEccCCCeeEeccCccCchhhhhhhhhhhHHHhcccccceeeeeeccCceEEEe
Q psy6276 142 SYQLS------TAENELGVVIALSEAASLFRSSEKLTNDIEFLKQEKLKLYEELSSSQKENEILRQTTGDLEVRL 210 (271)
Q Consensus 142 ~~~LS------T~~~eLGVV~A~c~cG~~Mvp~s~~~~c~~~~~~e~rKla~~~~s~~~~~~~~~~~~~~~~~~~ 210 (271)
.+.|| |++++||++. ++.|+.++.. .++.+-....-.+...| .+...|||+.|.||++||++
T Consensus 70 ~~~Ltc~~~~~~r~~~lG~L~-----~G~l~~v~~~-~v~rl~~~~~~~~l~~l-~~~~~~ei~vG~NG~IWi~~ 137 (175)
T 2ja9_A 70 EAEIECFDSTTGRDAGFGILE-----DGMIIDVNLN-FARQLLFNNDFPLLKVL-AAHTKFEVAIGLNGKIWVKC 137 (175)
T ss_dssp CCEEESSCTTTCSCTTCEEEC-----SCEEEECCHH-HHHHHHHCTTCCHHHHH-HTTCCCEEEEETTTEEEEEC
T ss_pred ceEEEecccccccccCCcCcC-----CCEEEEEcHH-HhhHHhcCCCcchHHhh-hccCCeEEEEECCcEEEEec
Confidence 79999 9999999995 6677777731 11111000000133334 23568999999999999998
No 9
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=98.52 E-value=7.1e-07 Score=66.63 Aligned_cols=69 Identities=13% Similarity=0.224 Sum_probs=56.7
Q ss_pred CCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCCC-Cceee
Q psy6276 68 PTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKEL-HSYQL 145 (271)
Q Consensus 68 P~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d~-~~~~L 145 (271)
|++||+|.|+|+++.+..|+|+|. ..+.|++|.+++.... . +.|++||.|.|+ ++.+.. +.+.|
T Consensus 3 ~~~G~iv~G~V~~v~~~G~fV~l~--------~~~~Gllh~sel~~~~-----~-~~~~~Gd~V~v~V~~vd~~~~~i~l 68 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEKYGAFINLN--------EQVRGLLRPRDMISLR-----L-ENLNVGDEIIVQAIDVRPEKREIDF 68 (80)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEE--------TTEEEEECGGGCSSCC-----G-GGCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEEEEEeCCEEEEEEC--------CCCEEEEEHHHCCccc-----c-eeeCCCCEEEEEEEEEECCCCEEEE
Confidence 789999999999999999999995 3689999999875422 1 689999999999 777542 56888
Q ss_pred eeccC
Q psy6276 146 STAEN 150 (271)
Q Consensus 146 ST~~~ 150 (271)
|++..
T Consensus 69 sl~~~ 73 (80)
T 2k52_A 69 KYIPL 73 (80)
T ss_dssp EECSC
T ss_pred EEeec
Confidence 88653
No 10
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=98.39 E-value=1.3e-06 Score=71.23 Aligned_cols=73 Identities=16% Similarity=0.127 Sum_probs=59.8
Q ss_pred cCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC-CCcee
Q psy6276 67 VPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE-LHSYQ 144 (271)
Q Consensus 67 iP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d-~~~~~ 144 (271)
-+++|++|.|+|++|.+..|+|+|. ..+.|+||.+++.... ..++.+.|++||.|.|+ ++++. ...+.
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~--------~~~~Glihisel~~~~--~~~~~~~~~vGd~V~vkV~~vd~~~~kI~ 73 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALD--------EETQGLVHISEVTHGF--VKDINEHLSVGDEVQVKVLAVDEEKGKIS 73 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEE--------TTEEEEEEGGGTSSSC--CSCGGGTCCTTCEEEEEEEEEETTTTEEE
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEEC--------CCcEEEEEHHHCCccc--ccCccccCCCCCEEEEEEEEEeCCCCEEE
Confidence 3689999999999999999999995 3689999999986432 23678899999999999 87753 45688
Q ss_pred eeecc
Q psy6276 145 LSTAE 149 (271)
Q Consensus 145 LST~~ 149 (271)
||++.
T Consensus 74 LSlk~ 78 (130)
T 2k4k_A 74 LSIRA 78 (130)
T ss_dssp EESHH
T ss_pred EEEee
Confidence 88764
No 11
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.34 E-value=7.1e-07 Score=76.38 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=64.3
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchh--hh-------HhhhcCCCCCCEEEEE-
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEI--DR-------IEMYKCYRPGDIILAR- 134 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~--d~-------~~m~~~f~~GDIV~Ak- 134 (271)
.+-|.+|+++.|+|+++.+..++|+|. ++.|++|++++..... |. .+..+.|++||.|+++
T Consensus 76 ~~~~~~Gev~~G~V~~v~~~G~fV~l~---------~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV 146 (187)
T 1go3_E 76 VYIPEMYELIEGEVVDVVEFGSFVRLG---------PLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARI 146 (187)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS---------SSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEE
T ss_pred EEccCCCCEEEEEEEEEeCcEEEEEEc---------CccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEE
Confidence 456999999999999999999999983 4899999998753211 00 1456789999999999
Q ss_pred EecCC------CCceeeeeccCCCeeE
Q psy6276 135 LPLKE------LHSYQLSTAENELGVV 155 (271)
Q Consensus 135 iS~~d------~~~~~LST~~~eLGVV 155 (271)
++.+. ...+.||++++.||++
T Consensus 147 ~~vd~~~~~p~~~~I~lS~k~~~LG~~ 173 (187)
T 1go3_E 147 VAISLKAERKRGSKIALTMRQPYLGKL 173 (187)
T ss_dssp EEEECCC-----CEEEEECCSTTCEEH
T ss_pred EEEEcccCCCCccEEEEEEcCCCCCcH
Confidence 77642 1268899999999975
No 12
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.34 E-value=1.8e-06 Score=68.77 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=63.4
Q ss_pred eEEEEeeCCCccccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEE
Q psy6276 54 SVIEVSSYKKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILA 133 (271)
Q Consensus 54 ~~I~V~P~~~~~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~A 133 (271)
+.+.+.|.....+-|++|++|.|+|+++.+..|+|+|. ..+.|++|.+++... ....+....|++||.|.+
T Consensus 14 k~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~--------~~~~Glvhisel~~~-~~~~~~~~~~~vGd~V~v 84 (115)
T 2khi_A 14 LVPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIE--------EGVEGLVHVSEMDWT-NKNIHPSKVVNVGDVVEV 84 (115)
T ss_dssp -------CCCSSCSSCSSCEEEEEEEEEETTEEEEECS--------TTCEEEEETTSSSCS-STTCSSTTTCCTTCEEEE
T ss_pred hhcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEEC--------CCCEEEEEHHHCCcc-ccccCcccEECCCCEEEE
Confidence 45667776555678999999999999999999999984 358999999998531 112356778999999999
Q ss_pred E-EecCC-CCceeeeecc
Q psy6276 134 R-LPLKE-LHSYQLSTAE 149 (271)
Q Consensus 134 k-iS~~d-~~~~~LST~~ 149 (271)
+ ++.+. .+.+.||++.
T Consensus 85 kV~~vd~~~~rI~lslk~ 102 (115)
T 2khi_A 85 MVLDIDEERRRISLGLKQ 102 (115)
T ss_dssp EEEEEETTTTEEEECCCC
T ss_pred EEEEEECCCCEEEEEEEe
Confidence 9 77653 3568888875
No 13
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=98.33 E-value=1.1e-06 Score=69.25 Aligned_cols=75 Identities=17% Similarity=0.207 Sum_probs=60.7
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC-CCc
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE-LHS 142 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d-~~~ 142 (271)
...+++||+|.|+|+++.+..|+|+|. ..+.|+||.+++.... ..++.+.|++||.|.|+ ++++. .+.
T Consensus 26 ~~~~~~G~iv~G~V~~v~~~G~fV~l~--------~~~~Gll~~sel~~~~--~~~~~~~~~vGd~V~v~V~~vd~~~~k 95 (109)
T 2khj_A 26 VALNKKGAIVTGKVTAVDAKGATVELA--------DGVEGYLRASEASRDR--VEDATLVLSVGDEVEAKFTGVDRKNRA 95 (109)
T ss_dssp TTTCCSSSEEEEEEEEECSSCEEEECS--------TTCBCCBCTTCCCSSS--SSSGGGSCCTTCEEEEEEEEEETTTTE
T ss_pred hhcCCCCCEEEEEEEEEECCeEEEEEC--------CCCEEEEEHHHcCccc--ccChhhccCCCCEEEEEEEEEECCCCE
Confidence 456899999999999999999999984 3579999999875422 23578899999999999 77753 346
Q ss_pred eeeeecc
Q psy6276 143 YQLSTAE 149 (271)
Q Consensus 143 ~~LST~~ 149 (271)
+.||++.
T Consensus 96 i~LS~k~ 102 (109)
T 2khj_A 96 ISLSVRA 102 (109)
T ss_dssp EEEETTS
T ss_pred EEEEEee
Confidence 8898875
No 14
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=1.1e-06 Score=70.87 Aligned_cols=78 Identities=10% Similarity=0.028 Sum_probs=61.0
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCCC--
Q psy6276 64 EVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKEL-- 140 (271)
Q Consensus 64 ~~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d~-- 140 (271)
-.+.|++|++|.|+|++|.+..|+|+|.. ....|+||++++.... ..++.+.|++||.|.|+ ++++..
T Consensus 16 ~~~~~~vG~iv~G~V~~I~~fGaFV~l~g-------~~~~Glvhisel~~~~--~~~~~~~~~~Gd~V~VkV~~vd~~~~ 86 (119)
T 2cqo_A 16 MENLPALYTIFQGEVAMVTDYGAFIKIPG-------CRKQGLVHRTHMSSCR--VDKPSEIVDVGDKVWVKLIGREMKND 86 (119)
T ss_dssp SCCSCCTTCEEEEEEEEEETTEEEEECTT-------CSSCEEEEHHHHCSSC--CSCHHHHCCTTCEEEEEEEEEEECSS
T ss_pred hhcccCCCCEEEEEEEEEeCceEEEEECC-------CcEEEEEEHHHCCccc--ccChhhcCCCCCEEEEEEEEEecccc
Confidence 35678999999999999999999999931 1268999999986422 23567889999999999 877521
Q ss_pred -CceeeeeccC
Q psy6276 141 -HSYQLSTAEN 150 (271)
Q Consensus 141 -~~~~LST~~~ 150 (271)
..+.||++..
T Consensus 87 ~~~i~LSlk~~ 97 (119)
T 2cqo_A 87 RIKVSLSMKVV 97 (119)
T ss_dssp CEEEEEESTTB
T ss_pred CceEEEEEeec
Confidence 3688888753
No 15
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=98.28 E-value=2.4e-06 Score=73.91 Aligned_cols=78 Identities=12% Similarity=0.097 Sum_probs=54.5
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC-CCc
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE-LHS 142 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d-~~~ 142 (271)
.+.|++||+|.|+|++|.+..|+|+|.. .....|++|++++.... .....+.|++||.|.++ ++++. .+.
T Consensus 10 ~~~p~~G~iv~G~V~~I~~fGaFV~L~e------~~g~eGLvhiSels~~~--v~~~~~~~~vGd~V~VkVl~vD~~~~r 81 (182)
T 1kl9_A 10 HKFPEVEDVVMVNVRSIAEMGAYVSLLE------YNNIEGMILLSELSRRR--IRSINKLIRIGRNECVVVIRVDKEKGY 81 (182)
T ss_dssp SSSCCTTCEEEEEEEEECSSEEEEEETT------TTTEEEEEEGGGC--------------CTTCEEEEEEEEEETTTTE
T ss_pred ccCCCCCCEEEEEEEEEeccEEEEEEcc------CCCcEEEEEHHHCCCcc--cCCHHHhcCCCCEEEEEEEEEECCCCE
Confidence 4568999999999999999999999931 02479999999986422 34688999999999999 88753 356
Q ss_pred eeeeeccC
Q psy6276 143 YQLSTAEN 150 (271)
Q Consensus 143 ~~LST~~~ 150 (271)
+.||++..
T Consensus 82 I~LSlk~~ 89 (182)
T 1kl9_A 82 IDLSKRRV 89 (182)
T ss_dssp EEEESTTC
T ss_pred EEEEEeec
Confidence 88887753
No 16
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=2.5e-06 Score=66.80 Aligned_cols=78 Identities=15% Similarity=0.278 Sum_probs=60.2
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCCCCce
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELHSY 143 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d~~~~ 143 (271)
...|++|+++.|+|++|.+..|+|+|... .....|++|.+++.... ...+..+.|++||.|.++ ++.+. ..+
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~-----~~~~~Glvhisel~~~~-~~~~~~~~~~~Gd~V~VkV~~vd~-~~i 79 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGL-----RKRWEGLVHISELRREG-RVANVADVVSKGQRVKVKVLSFTG-TKT 79 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSS-----SSCCEEEECGGGTSSSS-CCCCHHHHCCTTCEEEEEEEEEET-TEE
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCC-----CCCeEEEEEHHHCCCCc-ccCCcccEeCCCCEEEEEEEEEEC-Cee
Confidence 34589999999999999999999999521 01579999999983211 123567789999999999 87754 468
Q ss_pred eeeecc
Q psy6276 144 QLSTAE 149 (271)
Q Consensus 144 ~LST~~ 149 (271)
.||++.
T Consensus 80 ~LSlk~ 85 (103)
T 2eqs_A 80 SLSMKD 85 (103)
T ss_dssp EEESTT
T ss_pred EEEEee
Confidence 888875
No 17
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=98.17 E-value=5.7e-06 Score=71.01 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=58.2
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC-CCc
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE-LHS 142 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d-~~~ 142 (271)
.+.|++||+|.|+|++|.+..|+|+|.. .....|++|++++.... ..++.+.|++||.|.|+ ++++. .+.
T Consensus 10 ~~~p~~G~iv~G~V~~i~~fGaFV~L~e------~~gveGLvhiSels~~~--v~~~~~~~~vGd~V~vkVl~vd~~~~~ 81 (175)
T 2a19_A 10 NKYPEIDDIVMVNVQQIAEMGAYVKLLE------YDNIEGMILLSELSRRR--IRSIQKLIRVGKNDVAVVLRVDKEKGY 81 (175)
T ss_dssp SSSCCTTCEEEEEEEEEETTEEEEEETT------TTTCEEEEECC----------CCCCCCCTTSEEEEEEEEEETTTTE
T ss_pred hcCCCCCCEEEEEEEEEecceEEEEEcC------CCCcEEEEEHHHcCCcc--cCCHHHcCCCCCEEEEEEEEEECCCCe
Confidence 4578999999999999999999999921 02478999999986422 34678899999999999 88743 356
Q ss_pred eeeeeccCC
Q psy6276 143 YQLSTAENE 151 (271)
Q Consensus 143 ~~LST~~~e 151 (271)
+.||++...
T Consensus 82 I~LSlk~~~ 90 (175)
T 2a19_A 82 IDLSKRRVS 90 (175)
T ss_dssp EEEESTTCC
T ss_pred EEEEEEecC
Confidence 888887643
No 18
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=98.02 E-value=2.1e-05 Score=71.99 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=62.2
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC-CC
Q psy6276 64 EVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE-LH 141 (271)
Q Consensus 64 ~~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d-~~ 141 (271)
..+.|++||+|.|+|+++.+..|+|+|... ....|+||.+++.... ..+..+.|++||.|.++ ++++. .+
T Consensus 5 ~~~~p~~Gdiv~G~V~~I~~fGaFV~L~e~------~gieGlIhiSels~~~--v~~~~~~~kvGd~V~vkVi~vD~~~~ 76 (275)
T 3aev_A 5 AREYPEEGEFVVATVKRIHNYGAFLELDEY------PGKEAFMHISEVASTW--VRNIRDYLKEGQKVVAKVIRVDPRKG 76 (275)
T ss_dssp --CCCCTTCEEEEEEEEEETTEEEEEETTS------TTCEEEEEGGGSCSSC--CSCGGGTCCTTCEEEEEEEEEETTTT
T ss_pred cccCCCCCCEEEEEEEEEECcEEEEEECCC------CCeEEEEEHHHcCccc--ccCHHhccCCCCEEEEEEEEEECCCC
Confidence 456799999999999999999999999411 2479999999986322 23578899999999999 87753 46
Q ss_pred ceeeeeccC
Q psy6276 142 SYQLSTAEN 150 (271)
Q Consensus 142 ~~~LST~~~ 150 (271)
.+.||++..
T Consensus 77 ~I~LSlk~~ 85 (275)
T 3aev_A 77 HIDLSLRRV 85 (275)
T ss_dssp EEEEESTTC
T ss_pred EEEEEEeec
Confidence 789998764
No 19
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.00 E-value=1.7e-05 Score=63.35 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=62.0
Q ss_pred cCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC-CCcee
Q psy6276 67 VPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE-LHSYQ 144 (271)
Q Consensus 67 iP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d-~~~~~ 144 (271)
-+++|++|.|+|++|.+..|+|+|. . ....|+++.++...+ ....+..+.|++||.|.|+ ++.+. .+.+.
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~-~------~~~~~l~~~~~~~~~-~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~i~ 89 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIG-V------DGTRAFLPLLKAQEY-IRQKNKGAKLKVGQYLNCIVEKVKGNGGVVS 89 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECC-C------SSCEEEEEHHHHHHH-HHHHSSSCCCCTTCEEEEEEEECCTTSCEEE
T ss_pred cCCCCCEEEEEEEEEeCceEEEEEC-C------CCeEEEEEEeccccc-ccccCccCEeCCCCEEEEEEEEEeCCCCEEE
Confidence 4699999999999999999999995 1 124566665442111 1112456899999999999 88753 36799
Q ss_pred eeeccCCCeeEEEEc
Q psy6276 145 LSTAENELGVVIALS 159 (271)
Q Consensus 145 LST~~~eLGVV~A~c 159 (271)
||++..++|.-.+..
T Consensus 90 Lslk~~~l~~~~~~~ 104 (119)
T 1wi5_A 90 LSVGHSEVSTAIATE 104 (119)
T ss_dssp EECCCCCSCCCCCCS
T ss_pred EEEchhhcccceeec
Confidence 999999998655443
No 20
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=97.97 E-value=2e-05 Score=67.04 Aligned_cols=83 Identities=19% Similarity=0.270 Sum_probs=64.1
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchh--hh-------HhhhcCCCCCCEEEEE
Q psy6276 64 EVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEI--DR-------IEMYKCYRPGDIILAR 134 (271)
Q Consensus 64 ~~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~--d~-------~~m~~~f~~GDIV~Ak 134 (271)
-..-|.+|+++.|+|++++...++|++. ++.|++|++++....- |. .+....|++||.|++|
T Consensus 75 iv~~p~~Gev~~G~V~~v~~~G~fv~l~---------~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~Vrvk 145 (180)
T 4ayb_E 75 ITYVPVVQEVVEGEVLQVDNYGVFVNLG---------PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRAR 145 (180)
T ss_dssp EEECCCTTCEEEEEEEEEETTEEEEECS---------SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEE
T ss_pred eeeeccCCCEEEEEEeeeccceEEEEEC---------CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEE
Confidence 3456999999999999999999999973 6799999998853210 00 1355689999999999
Q ss_pred -EecCC-----CCceeeeeccCCCeeE
Q psy6276 135 -LPLKE-----LHSYQLSTAENELGVV 155 (271)
Q Consensus 135 -iS~~d-----~~~~~LST~~~eLGVV 155 (271)
++++. ...+.||++++.||.+
T Consensus 146 V~~v~~~~~~~~~rI~ls~k~~gLG~~ 172 (180)
T 4ayb_E 146 VISVASTVTGRLPRIALTMRQPYLGKL 172 (180)
T ss_dssp EEEECC-------CEEEECCSTTCEEH
T ss_pred EEEEeCCCCcccCcEEEEcCCCCCCCC
Confidence 77642 1358899999999974
No 21
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=97.91 E-value=2.9e-05 Score=59.32 Aligned_cols=73 Identities=14% Similarity=0.224 Sum_probs=56.4
Q ss_pred cCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEecc-ccccchhhhHhhhcCCCCCCEEEEE-EecCC-CCce
Q psy6276 67 VPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRE-NVRATEIDRIEMYKCYRPGDIILAR-LPLKE-LHSY 143 (271)
Q Consensus 67 iP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~s-dvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d-~~~~ 143 (271)
.|++|+++.|+|+ +.+..|+|+|... ....|++|++ ++.. .......+.| +||.|.++ ++.+. .+.+
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~------~~~eGLvhis~el~~--~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI 77 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDY------PHFEAILAESVKMHM--DRYVEYRDKL-VGKTVKVKVIRVDYTKGYI 77 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTC------TTSEEEEGGGSSCCH--HHHHHHHHHH-TTCEEEEEEEEEETTTTEE
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCC------CCeEEEEEeeHHhCc--ccccCHhHEe-CCCEEEEEEEEEECCCCEE
Confidence 4899999999999 9999999999410 1469999999 8753 1223556777 99999999 88753 3568
Q ss_pred eeeecc
Q psy6276 144 QLSTAE 149 (271)
Q Consensus 144 ~LST~~ 149 (271)
.||.+.
T Consensus 78 ~lslk~ 83 (88)
T 1luz_A 78 DVNYKR 83 (88)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 888764
No 22
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=97.86 E-value=2e-05 Score=66.68 Aligned_cols=82 Identities=18% Similarity=0.163 Sum_probs=60.7
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchh-hhH---------hhhcCCCCCCEEEEE
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEI-DRI---------EMYKCYRPGDIILAR 134 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~-d~~---------~m~~~f~~GDIV~Ak 134 (271)
.+-|.+|+++.|+|+++++..|+|+|. ++.|++|+++...... |.. .....|++||.|++|
T Consensus 76 ~~~~~~Gev~~G~V~~v~~fG~fV~l~---------~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vk 146 (172)
T 2c35_B 76 VFRPFKGEVVDAVVTQVNKVGLFTEIG---------PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLK 146 (172)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEET---------TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEE
T ss_pred EeeCCCCCEEEEEEEEEeCCEEEEEEC---------CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEE
Confidence 566899999999999999999999993 6789999998742111 111 124579999999999
Q ss_pred -EecCC-CC--ceeeeeccCCCeeE
Q psy6276 135 -LPLKE-LH--SYQLSTAENELGVV 155 (271)
Q Consensus 135 -iS~~d-~~--~~~LST~~~eLGVV 155 (271)
++.+- .+ ...-|++++.||.+
T Consensus 147 V~~vd~~~~~~~~igsm~~~~LG~~ 171 (172)
T 2c35_B 147 IVGTRVDKNDIFAIGSLMDDYLGLV 171 (172)
T ss_dssp EEEEEEETTEEEEEEECCSTTCEEC
T ss_pred EEEEEcCCCCcEEEEEecCCCCCCC
Confidence 76531 12 23447899999976
No 23
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=97.81 E-value=4.3e-05 Score=71.01 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=61.1
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC-CCce
Q psy6276 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE-LHSY 143 (271)
Q Consensus 66 yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d-~~~~ 143 (271)
..|++||+|.|+|++|.+..|+|+|... ....|++|.+++.... ..++.+.|++||.|.++ ++.+. .+.+
T Consensus 9 ~~~~vG~iv~G~V~~I~~fGaFV~L~ey------~gveGLvhiSels~~~--i~~~~~~~kvGd~V~VkVl~vD~~~~rI 80 (308)
T 1q8k_A 9 KFPEVEDVVMVNVRSIQEMGAYVSLLEY------NNIEGMIHLSELSRRR--IRSINKLIRIGRNECVKVIRVDKEKGYI 80 (308)
T ss_dssp CCCSSCCEEEEEEEEEETTEEEEESCTT------TSCCEEECGGGTSCSS--CSCCTTTCSSSCEEEEEEEEEETTTTEE
T ss_pred cCCCCCCEEEEEEEEEeCcEEEEEECCC------CCeEEEEEhHHcCccc--ccCHHHhcCCCCEEEEEEEEEeCCCCEE
Confidence 4578999999999999999999998410 2468999999986422 23678899999999999 87753 3568
Q ss_pred eeeeccC
Q psy6276 144 QLSTAEN 150 (271)
Q Consensus 144 ~LST~~~ 150 (271)
.||.+..
T Consensus 81 ~LSlK~~ 87 (308)
T 1q8k_A 81 DLSKRRV 87 (308)
T ss_dssp EEECSSC
T ss_pred EEEEEec
Confidence 8998764
No 24
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=97.75 E-value=3.5e-05 Score=70.07 Aligned_cols=79 Identities=10% Similarity=0.146 Sum_probs=62.4
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC-CC
Q psy6276 64 EVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE-LH 141 (271)
Q Consensus 64 ~~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d-~~ 141 (271)
..+.|++||+|.|+|++|.+..|+|+|... ....|+||.+++.... ..++.+.|++||.|.++ ++.+. .+
T Consensus 5 ~~~~~~vG~iv~G~V~~I~~~GaFV~l~e~------~~~~GlihiSels~~~--v~~~~~~~~vGd~V~VkVi~vd~~~g 76 (266)
T 3cw2_C 5 RSKLPSEGEILIATVKQVFDYGSYVSLDEY------GGLQAFLPWSEVSSKW--VKNIRDVLKENRKVIVKVIRVDRRKG 76 (266)
T ss_dssp SSSSCCTTCEEEEEEEECCSSSBEEEETTT------TSEECBBCGGGSSCSS--CCCHHHHSCTTCEEEEEECCCCSSSC
T ss_pred ccccCCCCCEEEEEEEEEeccEEEEEEcCC------CCeEEEEEhHHcCccc--ccCHHHhCcCCCEEEEEEEEEeCCCC
Confidence 456899999999999999999999999310 2469999999985322 23577889999999999 88753 35
Q ss_pred ceeeeeccC
Q psy6276 142 SYQLSTAEN 150 (271)
Q Consensus 142 ~~~LST~~~ 150 (271)
.+.||++..
T Consensus 77 ~I~LSlk~~ 85 (266)
T 3cw2_C 77 TVDVSLKKV 85 (266)
T ss_dssp CCBEESTTS
T ss_pred EEEEEEEec
Confidence 688888764
No 25
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=97.48 E-value=0.00022 Score=60.25 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=58.2
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccc-hhhhHhh-------hcCCCCCCEEEEE-E
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRAT-EIDRIEM-------YKCYRPGDIILAR-L 135 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~t-e~d~~~m-------~~~f~~GDIV~Ak-i 135 (271)
..-|.+|+++.|+|+++++..++|+|. +..|++|.+++... .-|.... .+.|++||.|++| +
T Consensus 78 ~~~~~~Gev~~G~V~~v~~fG~FV~l~---------~~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~ 148 (171)
T 1y14_B 78 VFKPFKGEVVDGTVVSCSQHGFEVQVG---------PMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIE 148 (171)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEEET---------TEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEE
T ss_pred EccCCCCCEEEEEEEEEecCEEEEEec---------CeEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEE
Confidence 345899999999999999999999994 37999999987421 1111111 2669999999999 7
Q ss_pred ecC-CCCc--eeeeeccCCCeeE
Q psy6276 136 PLK-ELHS--YQLSTAENELGVV 155 (271)
Q Consensus 136 S~~-d~~~--~~LST~~~eLGVV 155 (271)
+.+ +.++ ..=|++++.||.+
T Consensus 149 ~vd~~~~~~~~igsm~~~~LG~~ 171 (171)
T 1y14_B 149 GCISQVSSIHAIGSIKEDYLGAI 171 (171)
T ss_dssp EEEEETTEEEEEEECCSTTCEEC
T ss_pred EEEcCCCCcEEEEEcCCCCCCCC
Confidence 653 1122 2227788999964
No 26
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=97.31 E-value=7.9e-05 Score=63.27 Aligned_cols=82 Identities=17% Similarity=0.190 Sum_probs=60.1
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccch-hhh-------HhhhcCCCCCCEEEEE-
Q psy6276 64 EVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATE-IDR-------IEMYKCYRPGDIILAR- 134 (271)
Q Consensus 64 ~~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te-~d~-------~~m~~~f~~GDIV~Ak- 134 (271)
-.+-|.+|+++.|+|+++++..++|++. ++.|++|++++.... -|. .+....|++||.|++|
T Consensus 78 ivf~p~~Gev~~G~V~~v~~fG~FV~l~---------~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV 148 (172)
T 3h0g_G 78 VLWRPFRGEVVDAIVTTVNKMGFFANIG---------PLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKI 148 (172)
T ss_dssp EEECCCTTCEEECCCCEEETTEEECCBT---------TBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEE
T ss_pred eeeccCCCCEEEEEEEEEEcceEEEEeC---------CeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEE
Confidence 3567999999999999999999999983 578999999874211 010 1224679999999999
Q ss_pred EecC--CC--CceeeeeccCCCeeE
Q psy6276 135 LPLK--EL--HSYQLSTAENELGVV 155 (271)
Q Consensus 135 iS~~--d~--~~~~LST~~~eLGVV 155 (271)
++.+ .. ..+- |++++.||.+
T Consensus 149 ~~vd~~~~~~~~Ig-tm~~~~LG~~ 172 (172)
T 3h0g_G 149 VGTRTDATEIFAIA-TMKEDYLGVL 172 (172)
T ss_dssp EEEEESSSCEEEEE-ECCSTTCEEC
T ss_pred EEEECCCCCceEEE-EcCCCCCCCC
Confidence 6553 21 2244 7799999974
No 27
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=97.10 E-value=0.00046 Score=60.98 Aligned_cols=83 Identities=16% Similarity=0.168 Sum_probs=59.5
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccch-hhhHhh-------hcCCCCCCEEEEE-E
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATE-IDRIEM-------YKCYRPGDIILAR-L 135 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te-~d~~~m-------~~~f~~GDIV~Ak-i 135 (271)
..-|.+|+++.|+|++|++-.++|+|. +..|++|++++.... -|.... .+.|++||.|+.| +
T Consensus 78 ~~~p~vGev~~G~V~~vt~fG~FVelg---------~~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~ 148 (215)
T 2b8k_G 78 VFKPFKGEVVDGTVVSCSQHGFEVQVG---------PMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIE 148 (215)
T ss_dssp EECCCTTEEEEEEEEEEETTEEEEECT---------TSEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEEE
T ss_pred eeccCCCCEEEEEEEEEecceEEEEec---------CcEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEEE
Confidence 456899999999999999999999984 268999999874211 111111 1569999999999 6
Q ss_pred ecCC-CC---ceeeeeccCCCeeEEE
Q psy6276 136 PLKE-LH---SYQLSTAENELGVVIA 157 (271)
Q Consensus 136 S~~d-~~---~~~LST~~~eLGVV~A 157 (271)
+.+- .+ .+- |++++.||.+.+
T Consensus 149 ~vd~~~~~i~~Ig-Smk~~~LG~~~~ 173 (215)
T 2b8k_G 149 GCISQVSSIHAIG-SIKEDYLGAISH 173 (215)
T ss_dssp EEEEETTEEEEEE-ECCSTTCEEC--
T ss_pred EEEcCCCccEEEE-EcCCCCCCCcch
Confidence 6531 12 233 788999998863
No 28
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.04 E-value=0.0011 Score=57.72 Aligned_cols=82 Identities=12% Similarity=0.190 Sum_probs=58.0
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccch----hhh-------------HhhhcCCCC
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATE----IDR-------------IEMYKCYRP 127 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te----~d~-------------~~m~~~f~~ 127 (271)
..-|.+|.++.|+|++++...++|++. ++.|++|+++....+ .+. .+-...|++
T Consensus 76 ~f~p~~GEv~~G~Vs~vt~~GifV~lg---------~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~ 146 (203)
T 3ayh_B 76 IFRPFRGEVMLGKIKSCSEEGIRVTIS---------FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDI 146 (203)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECS---------SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCT
T ss_pred EEccCCCCEEEEEEEEEeccEEEEEEe---------CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcC
Confidence 455899999999999999999999983 567777777664211 000 123567999
Q ss_pred CCEEEEE-Ee--cCCC--------------------Cc--eeeeeccCCCeeE
Q psy6276 128 GDIILAR-LP--LKEL--------------------HS--YQLSTAENELGVV 155 (271)
Q Consensus 128 GDIV~Ak-iS--~~d~--------------------~~--~~LST~~~eLGVV 155 (271)
||.|+.| ++ +.+. .+ +.+|++++.||.+
T Consensus 147 Gd~VrvrV~~v~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~gs~~~~gLG~~ 199 (203)
T 3ayh_B 147 DEEIRFQIESEDFVDISPKRNKNATAITGTEALESVSPYTLIASCSRDGLGIP 199 (203)
T ss_dssp TCEEEEEEEEEEECC--------------------CCSEEEEEEBCSTTCBCG
T ss_pred CCEEEEEEEEEEccccCCCCccccccccccccccCCCCeEEEEEecCCCCcee
Confidence 9999999 54 4221 11 5667888888864
No 29
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=97.03 E-value=0.0016 Score=59.63 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=57.9
Q ss_pred CCCCEEEEEEEEEecceEEE-EEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC-CCceee
Q psy6276 69 TPGDVVTARIMAVQQHLCKA-HVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE-LHSYQL 145 (271)
Q Consensus 69 ~vGDIVIGrVt~V~~~~a~V-dI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d-~~~~~L 145 (271)
.+||+|-|+|.++++..++| .|. ..+.|+||.+++. ..|++||-|.|+ +++.+ .+.+.|
T Consensus 151 ~~G~~V~g~V~~i~~~G~fV~~i~--------~g~~Glih~SEl~----------~~l~~Gd~v~~~V~~id~~d~kI~L 212 (285)
T 3go5_A 151 MQNQNWPAIVYRLKLSGTFVYLPE--------NNMLGFIHPSERY----------AEPRLGQVLDARVIGFREVDRTLNL 212 (285)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETT--------TTEEEEECGGGCS----------SCCCTTCEEEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEEEEeCCcEEEEEeC--------CCeEEEEEHHHcc----------ccCCCCCEEEEEEEEEECCCCeEEE
Confidence 68999999999999999999 763 4689999998753 469999999999 88754 467999
Q ss_pred eeccCCCeeEE
Q psy6276 146 STAENELGVVI 156 (271)
Q Consensus 146 ST~~~eLGVV~ 156 (271)
|++.....-+.
T Consensus 213 Slk~~~~~~~~ 223 (285)
T 3go5_A 213 SLKPRSFEMLE 223 (285)
T ss_dssp ECSCCCCCCCC
T ss_pred EeChhhhhccc
Confidence 99987765433
No 30
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.96 E-value=0.00012 Score=74.99 Aligned_cols=73 Identities=10% Similarity=0.151 Sum_probs=0.0
Q ss_pred cCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCCCCceee
Q psy6276 67 VPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELHSYQL 145 (271)
Q Consensus 67 iP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d~~~~~L 145 (271)
-|++|++|.|+|++|.+-.|+|+|. ....|++|++++... ...+..+.|++||.|.+| ++++..+.+.|
T Consensus 634 ~~~vG~v~~G~V~~I~~fGaFVel~--------~g~eGLvHiSels~~--rv~~~~d~~kvGD~V~VkVi~iD~~grI~L 703 (726)
T 4aid_A 634 EAEVGKIYDGKVVKVVDFGAFVNFF--------GAKDGLVHVSQISNE--RVAKPSDVLKEGQMVKVKLLGFDDRGKTKL 703 (726)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcCCcEEEEEEEEEeccEEEEEEC--------CCcEEEEEHHHcCcc--cccCccccCCCCCEEEEEEEEECCCCcEEE
Confidence 5899999999999999999999995 358999999998642 233678899999999999 88865456888
Q ss_pred eecc
Q psy6276 146 STAE 149 (271)
Q Consensus 146 ST~~ 149 (271)
|++.
T Consensus 704 S~K~ 707 (726)
T 4aid_A 704 SMKV 707 (726)
T ss_dssp ----
T ss_pred EEee
Confidence 8865
No 31
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.79 E-value=0.0016 Score=59.00 Aligned_cols=74 Identities=11% Similarity=0.131 Sum_probs=56.2
Q ss_pred cccCCCCCEEEEEEEE----EecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC
Q psy6276 65 VIVPTPGDVVTARIMA----VQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE 139 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~----V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d 139 (271)
.|..++|++|.|.|.+ +....+.|+|.. + .....|+|+.++.- ..+.|++||-|+|- ....+
T Consensus 2 ~~~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~-~----~~k~EgiLP~~Eqi--------p~E~~~~GDrIkayV~~V~~ 68 (251)
T 2asb_A 2 EFSTREGEIVAGVIQRDSRANARGLVVVRIGT-E----TKASEGVIPAAEQV--------PGESYEHGNRLRCYVVGVTR 68 (251)
T ss_dssp --CCCTTCEEEEEEECCHHHHHTTCEEEEECS-S----SSCEEEEECGGGSC--------TTCCCCTTCEEEEEEEEEEC
T ss_pred chhhcCCCEEEEEEEEccccccCCeEEEEeCC-C----CcceEEEEcHHHcC--------CCccCCCCCEEEEEEEEEEc
Confidence 4678999999999999 899999999841 0 01369999987643 36789999999999 66543
Q ss_pred ---CCceeeeeccCC
Q psy6276 140 ---LHSYQLSTAENE 151 (271)
Q Consensus 140 ---~~~~~LST~~~e 151 (271)
++.+.||-..++
T Consensus 69 ~~~gpqIiLSRt~p~ 83 (251)
T 2asb_A 69 GAREPLITLSRTHPN 83 (251)
T ss_dssp CSSSCEEEEESSCHH
T ss_pred CCCCCEEEEEeccHH
Confidence 356889988765
No 32
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0011 Score=71.49 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=62.1
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecC-CCCce
Q psy6276 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLK-ELHSY 143 (271)
Q Consensus 66 yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~-d~~~~ 143 (271)
--+++|++|.|+|++|.+..++|+|. ....|++|++++.... ...+..+.|++||.|.|+ ++++ +...+
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~--------~gveGLVHiSelsd~~-~v~~p~~v~kvGd~V~vkVl~VD~~~~rI 968 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTN--------SEVECVVNAQRHAGAQ-LRRPANEIYEIGKTYPAKVIYIDYANITA 968 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECT--------TSCEEEECTTSSSSTT-SCSCSTTTSCTTCEEEEEEEEEEGGGTEE
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeC--------CCceEEEEHHHcCCCc-ccCCHHHcCCCCCEEEEEEEEEECCCCEE
Confidence 45689999999999999999999983 3469999999986421 123567899999999999 8775 33569
Q ss_pred eeeeccCCC
Q psy6276 144 QLSTAENEL 152 (271)
Q Consensus 144 ~LST~~~eL 152 (271)
.||++..++
T Consensus 969 ~LSlk~~dl 977 (1219)
T 3psi_A 969 EVSLLDHDV 977 (1219)
T ss_dssp EEECCHHHH
T ss_pred EEEecHHHh
Confidence 999987655
No 33
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=96.64 E-value=0.0035 Score=59.03 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=55.9
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC---C
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE---L 140 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d---~ 140 (271)
.|..+.||+|.|.|.++....+.||+. ...|+||.++.. ..+.|++||-|+|. ++..+ +
T Consensus 129 e~~~~~GeIV~G~V~ri~~~~v~VDlG---------k~EgiLp~sE~i--------p~E~~~vGD~Vkv~V~~V~~~~kg 191 (344)
T 1hh2_P 129 KYSELKGTVTTAEVIRVMGEWADIRIG---------KLETRLPKKEWI--------PGEEIKAGDLVKVYIIDVVKTTKG 191 (344)
T ss_dssp CTTCCTTCEEEEEEEEECSSEEEEEET---------TEEEEEEGGGSC--------TTCCCCTTCEEEEEEEEEEEETTE
T ss_pred HHhhcCCCEEEEEEEEEecCcEEEEeC---------CeEEEEeHHHcC--------CCcCCCCCCEEEEEEEEEEcCCCC
Confidence 456779999999999999999999983 368999998764 25689999999999 77642 2
Q ss_pred CceeeeeccCC
Q psy6276 141 HSYQLSTAENE 151 (271)
Q Consensus 141 ~~~~LST~~~e 151 (271)
+.+.||-..++
T Consensus 192 ~~I~LSRt~p~ 202 (344)
T 1hh2_P 192 PKILVSRRVPE 202 (344)
T ss_dssp EEEEEESSSHH
T ss_pred cEEEEEeeccH
Confidence 45778877554
No 34
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.36 E-value=0.004 Score=59.14 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=74.6
Q ss_pred ccccCCCCCEEEEEEEE----EecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecC
Q psy6276 64 EVIVPTPGDVVTARIMA----VQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLK 138 (271)
Q Consensus 64 ~~yiP~vGDIVIGrVt~----V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~ 138 (271)
..|..++||+|.|.|.+ +....+.|+|.. + .....|+||+++.-+ .+.|++||-|+|- .++.
T Consensus 124 ~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~--~---~~k~EgiLP~~EqiP--------~E~~~~GDrVkvyV~~V~ 190 (366)
T 1k0r_A 124 GEFSTREGEIVAGVIQRDSRANARGLVVVRIGT--E---TKASEGVIPAAEQVP--------GESYEHGNRLRCYVVGVT 190 (366)
T ss_dssp ---CCCTTCEEEEEEECCHHHHHTTCEEEEECC--S---SSCEEEEECGGGSCT--------TCCCCTTCEEEEEEEEEE
T ss_pred HHHHhcCCCEEEEEEEEccccccCCeEEEEeCC--C---ccceEEEEcHHHcCC--------CccCCCCCEEEEEEEEEe
Confidence 45678999999999999 999999999941 0 013699999977543 5789999999999 6654
Q ss_pred C---CCceeeeeccCCC--------------eeEEEEc---cCCCee-Eec-------cCccCchhhhhhhhhhhHHHh
Q psy6276 139 E---LHSYQLSTAENEL--------------GVVIALS---EAASLF-RSS-------EKLTNDIEFLKQEKLKLYEEL 189 (271)
Q Consensus 139 d---~~~~~LST~~~eL--------------GVV~A~c---~cG~~M-vp~-------s~~~~c~~~~~~e~rKla~~~ 189 (271)
+ ++++.||-..+++ |.|.-++ ..|..- +.+ .+...|.--+-.--+.|..+|
T Consensus 191 ~~~kgpqI~LSRT~p~lv~~Lfe~EVPEI~dG~VeIk~iARepG~RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL 269 (366)
T 1k0r_A 191 RGAREPLITLSRTHPNLVRKLFSLEVPEIADGSVEIVAVAREAGHRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSEL 269 (366)
T ss_dssp CCSSSCEEEEESSCHHHHHHHHHHHCHHHHTTSEEEEEEEEETTTEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHT
T ss_pred cCCCccEEEEEeCChHHHHHHHHhcchhhcCCeEEEEEEEecCCCeEEEEEEeCCCCCCCcccccCCcchHHHHHHHHh
Confidence 3 3568888776652 6665554 455443 111 134556554433334477777
No 35
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.00059 Score=72.38 Aligned_cols=78 Identities=9% Similarity=0.109 Sum_probs=0.0
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecC-CCCce
Q psy6276 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLK-ELHSY 143 (271)
Q Consensus 66 yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~-d~~~~ 143 (271)
--+++|++|.|+|++|.+..++|+|. ....|++|++++.... ...+..+.|++||.|.|+ ++++ +...+
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~--------~gveGLVHiSelsd~~-~v~~~~~v~kvGd~V~vkVl~VD~~~~rI 971 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTN--------SEVECVVNAQRHAGAQ-LRRPANEIYEIGKTYPAKVIYIDYANITA 971 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeC--------CCcEEEEEHHHcCCCc-ccCCHHHcCCCCCEEEEEEEEEECCCCEE
Confidence 34689999999999999999999984 3469999999886421 134577899999999999 8875 34569
Q ss_pred eeeeccCCC
Q psy6276 144 QLSTAENEL 152 (271)
Q Consensus 144 ~LST~~~eL 152 (271)
.||++..++
T Consensus 972 ~LSlk~~dl 980 (1030)
T 3psf_A 972 EVSLLDHDV 980 (1030)
T ss_dssp ---------
T ss_pred EEEechHHh
Confidence 999988776
No 36
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.08 E-value=0.00097 Score=68.35 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=0.0
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCCCCcee
Q psy6276 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELHSYQ 144 (271)
Q Consensus 66 yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d~~~~~ 144 (271)
.-|++|+++.|+|+++.+..++|+|. ....|++|++++... ...+..+.|++||.|.+| ++.+....+.
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~--------~g~eGLvHiSel~~~--~v~~~~~~~~vGd~V~VkVi~vd~~grI~ 692 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIG--------GGKEGLVHISQIADK--RVEKVTDYLQMGQEVPVKVLEVDRQGRIR 692 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeC--------CCceEEEEHHHcCCc--cccCcccccCCCCEEEEEEEEECCCCcEE
Confidence 45799999999999999999999995 247899999998542 234677889999999999 8876445688
Q ss_pred eeecc
Q psy6276 145 LSTAE 149 (271)
Q Consensus 145 LST~~ 149 (271)
||++.
T Consensus 693 LS~k~ 697 (723)
T 3cdi_A 693 LSIKE 697 (723)
T ss_dssp -----
T ss_pred EEEEe
Confidence 88764
No 37
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=95.97 E-value=0.003 Score=65.34 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=60.1
Q ss_pred cCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-EecCC-CCcee
Q psy6276 67 VPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKE-LHSYQ 144 (271)
Q Consensus 67 iP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~~d-~~~~~ 144 (271)
-+++|++|.|+|++|.+..++|+|. ....|++|++++... ...+..+.|++||.|.++ ++++. ...+.
T Consensus 651 ~l~vG~iv~G~V~~V~~fGaFV~l~--------~~~eGLVhiS~Lsd~--~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~ 720 (785)
T 3bzc_A 651 DLKPGMVLEGVVTNVTNFGAFVDIG--------VHQDGLVHISALSEK--FVKDPYEVVKAGDIVKVKVMEVDIPRNRVG 720 (785)
T ss_dssp TCCTTCBCCCEEEEEETTEEEEECS--------SSSEEEEETTTSCSS--CCSCHHHHCCTTCCCCCBEEEEETTTTEEE
T ss_pred hcCCCCEEEEEEEEEecCCeEEEeC--------CCcEEEEEHHHcCcc--ccCChhheeCCCCEEEEEEEEEECCCCEEE
Confidence 3689999999999999999999983 246899999998642 233567889999999999 77742 35689
Q ss_pred eeeccCC
Q psy6276 145 LSTAENE 151 (271)
Q Consensus 145 LST~~~e 151 (271)
||++..+
T Consensus 721 LSlk~~~ 727 (785)
T 3bzc_A 721 LSMRMSD 727 (785)
T ss_dssp ECCSSCC
T ss_pred EEEecCC
Confidence 9997654
No 38
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.022 Score=50.14 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=47.1
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccch----hhh--------HhhhcCCCCCCEEE
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATE----IDR--------IEMYKCYRPGDIIL 132 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te----~d~--------~~m~~~f~~GDIV~ 132 (271)
-+-|.+|.++.|+|++|+...++|++. .++.|++++++....+ .+. .+....|++||.|+
T Consensus 76 ~f~p~vGEv~~G~Is~Vt~fGifVeL~--------g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~Vr 147 (218)
T 2ckz_B 76 VFKPFLGEIVTGWISKCTAEGIKVSLL--------GIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIR 147 (218)
T ss_dssp EECCCTTCEEEEEEEEEETTEEEEECT--------TSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEE
T ss_pred EecCCCCCEEEEEEEEEccCcEEEEcc--------CccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEE
Confidence 456899999999999999999999982 3567888887764211 000 12356799999999
Q ss_pred EE-Ee
Q psy6276 133 AR-LP 136 (271)
Q Consensus 133 Ak-iS 136 (271)
.| ++
T Consensus 148 vrV~~ 152 (218)
T 2ckz_B 148 FRIER 152 (218)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99 54
No 39
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.62 E-value=0.0012 Score=68.09 Aligned_cols=75 Identities=9% Similarity=0.092 Sum_probs=34.0
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccc---cchhhhHhhhcCCCCCCEEEEE-EecCCCC
Q psy6276 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVR---ATEIDRIEMYKCYRPGDIILAR-LPLKELH 141 (271)
Q Consensus 66 yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr---~te~d~~~m~~~f~~GDIV~Ak-iS~~d~~ 141 (271)
..|++|+++.|+|+++.+-.++|+|. ....|++|+++++ .. ....+..+.|++||.|.+| ++++..+
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~--------~g~eGLvHiSel~~~~s~-~rv~~~~~~~~vGd~V~VkVi~vd~~g 733 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLL--------PGKDGLLHISQIRKLAGG-KRVENVEDVLGVGQKVQVEIAEIDSRG 733 (757)
T ss_dssp ----------CBEEECC-CSCEECCC-----------CCCCC--------------------CCSSCBCCCCCCCCCSSC
T ss_pred hhcccccEEEEEEEEccccEEEEEEc--------CCcEEEEEhHHhccccCC-CcccCcccccCCCCEEEEEEEEECCCC
Confidence 46899999999999999999999984 2478999999982 21 2234677899999999999 8876545
Q ss_pred ceeeeecc
Q psy6276 142 SYQLSTAE 149 (271)
Q Consensus 142 ~~~LST~~ 149 (271)
.+.||++.
T Consensus 734 rI~LS~k~ 741 (757)
T 1e3p_A 734 KLSLIPVI 741 (757)
T ss_dssp C-------
T ss_pred CEEEEEec
Confidence 68888764
No 40
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=94.16 E-value=0.13 Score=50.80 Aligned_cols=74 Identities=9% Similarity=0.094 Sum_probs=53.4
Q ss_pred cCCCCCEEEEEEEEEecc--eEEEEEeeecCcccCCceeeEEeccccccchh-------hhHhhhcCCCCCCEEEEE-Ee
Q psy6276 67 VPTPGDVVTARIMAVQQH--LCKAHVISVGNTALSRTFRALLRRENVRATEI-------DRIEMYKCYRPGDIILAR-LP 136 (271)
Q Consensus 67 iP~vGDIVIGrVt~V~~~--~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~-------d~~~m~~~f~~GDIV~Ak-iS 136 (271)
-+.+|+|..|+|++|.+. .|+|||. ..-.|+||.+|+..... ...++.+.+++||-|..+ +.
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG--------~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~K 113 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYG--------AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDK 113 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESS--------SSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEE
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeC--------CCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEe
Confidence 467999999999999999 8999995 35579999999843210 012466789999999999 65
Q ss_pred cCCC-Cceeeeec
Q psy6276 137 LKEL-HSYQLSTA 148 (271)
Q Consensus 137 ~~d~-~~~~LST~ 148 (271)
...+ .-..|||.
T Consensus 114 e~~g~KGa~lTt~ 126 (517)
T 2bx2_L 114 EERGNKGAALTTF 126 (517)
T ss_dssp CCCTTCCCEEESS
T ss_pred eccccCCceEEee
Confidence 3211 23455553
No 41
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=92.75 E-value=0.47 Score=36.51 Aligned_cols=61 Identities=15% Similarity=0.198 Sum_probs=42.7
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchh---hhHh-hhcCCCCCCEEEEE
Q psy6276 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEI---DRIE-MYKCYRPGDIILAR 134 (271)
Q Consensus 66 yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~---d~~~-m~~~f~~GDIV~Ak 134 (271)
..|..|+...|.|+++.++.+.|.+. ....+.|..++.+-... .... ..+.|++||+|+.+
T Consensus 29 ~~~~~~~~~~AvV~~v~~~~~~v~~~--------~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 29 DIGNSDDILAAVVLSATPGAVEAFRK--------NGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TSCTTTTCEEEEEEEEETTEEEEEET--------TSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred ccCccCCeEEEEEEEeCCCeEEEEEc--------CCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 35778999999999999999888763 12344566555542211 1123 56789999999998
No 42
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=92.47 E-value=0.22 Score=37.95 Aligned_cols=56 Identities=11% Similarity=0.196 Sum_probs=43.3
Q ss_pred CCCeEecCCcccCCC-CCeeeCCCEEEe-CCEEEEEEeeEEEEeccccCCCcceEEEEeeC
Q psy6276 3 NPPICIPGQRICQLD-SDIVGGRGTYVR-QGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61 (271)
Q Consensus 3 ~~~iVlPGD~L~~~e-E~~~~G~GtY~~-~g~I~ASv~G~v~i~~~~~~~~~~~~I~V~P~ 61 (271)
++++|.||..|...- ..|-||.++-.- |..|||.+-|.|.+... ...++.|+|.|.
T Consensus 27 ~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~---~~~r~~VsV~p~ 84 (85)
T 3v2d_0 27 EGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDR---GRLGRYVHVRPL 84 (85)
T ss_dssp TTCEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEEC---GGGCEEEEEEEC
T ss_pred CCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEc---CCCCEEEEEEEC
Confidence 457999999987532 249999999875 88999999999998751 123578999883
No 43
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=92.43 E-value=0.49 Score=43.10 Aligned_cols=148 Identities=14% Similarity=0.074 Sum_probs=90.8
Q ss_pred CCCCCEEEEEEEEEe-cceEEEEEeeecCcccCC-ceeeEEeccccccchhhhHhhhcCCCCCCEEEEEEecCCCCceee
Q psy6276 68 PTPGDVVTARIMAVQ-QHLCKAHVISVGNTALSR-TFRALLRRENVRATEIDRIEMYKCYRPGDIILARLPLKELHSYQL 145 (271)
Q Consensus 68 P~vGDIVIGrVt~V~-~~~a~VdI~~v~~~~L~~-~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~AkiS~~d~~~~~L 145 (271)
-.+|+++.|+|++++ +-.++|||. . ...|++|.++..... ...+.+||-|...+.++....+.|
T Consensus 67 ~~~G~~~~g~V~~v~~~~GaFVdiG--------~~~~d~lvp~sel~~~~------~~~~~~Gd~v~v~l~iD~~~Ri~l 132 (285)
T 3go5_A 67 ATQDQFGWGRVTEVRKDLGVFVDTG--------LPDKEIVVSLDILPELK------ELWPKKGDQLYIRLEVDKKDRIWG 132 (285)
T ss_dssp SCSSSCEEEEEEEEETTTEEEEECS--------CTTCCEEEEGGGSCSSG------GGSCCTTCEEEEEEEECTTSCEEE
T ss_pred ccCCCEEEEEEEEEccCceEEEEEC--------CCCcEEEEEHHHCCccc------ccccCCCCEEEEEEEECCCCcEEE
Confidence 378999999999999 688999983 3 268999999875421 235799999976665554456889
Q ss_pred eeccC-----------C-------CeeEEEEccCCCee-Eecc---CccCchhhhhhhhhhhHHHhcccccceeeeeecc
Q psy6276 146 STAEN-----------E-------LGVVIALSEAASLF-RSSE---KLTNDIEFLKQEKLKLYEELSSSQKENEILRQTT 203 (271)
Q Consensus 146 ST~~~-----------e-------LGVV~A~c~cG~~M-vp~s---~~~~c~~~~~~e~rKla~~~~s~~~~~~~~~~~~ 203 (271)
|++.. . -|.|...+.-|..+ .--. -.++- .|++ .+.. .-
T Consensus 133 s~k~~~~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~------------SEl~-----~~l~--~G 193 (285)
T 3go5_A 133 LLAYQEDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHP------------SERY-----AEPR--LG 193 (285)
T ss_dssp EECCHHHHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECG------------GGCS-----SCCC--TT
T ss_pred EehhhhhcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEH------------HHcc-----ccCC--CC
Confidence 87421 1 26666666556554 2211 11111 1111 0111 22
Q ss_pred CceEEEeEeeccccceeeeeehhhhccccCchhhhhHHHhhhccccc
Q psy6276 204 GDLEVRLMQMNEVKGEMEFKIKELNKKNQSESKLSDTIRELNEENIG 250 (271)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (271)
=.+.++....++-.|.+.+-+|.+.... -...++.|-+.-++|-|
T Consensus 194 d~v~~~V~~id~~d~kI~LSlk~~~~~~--~~~~a~~il~~L~~~~G 238 (285)
T 3go5_A 194 QVLDARVIGFREVDRTLNLSLKPRSFEM--LENDAQMILTYLESNGG 238 (285)
T ss_dssp CEEEEEEEEEETTTTEEEEECSCCCCCC--CCHHHHHHHHHHHHTTT
T ss_pred CEEEEEEEEEECCCCeEEEEeChhhhhc--cchHHHHHHHHHHhcCC
Confidence 2467777777777788888888775432 23445555444444433
No 44
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=90.91 E-value=0.29 Score=37.76 Aligned_cols=56 Identities=14% Similarity=0.245 Sum_probs=43.0
Q ss_pred CCCeEecCCcccCCCC-CeeeCCCEEEe-CCEEEEEEeeEEEEeccccCCCcceEEEEeeC
Q psy6276 3 NPPICIPGQRICQLDS-DIVGGRGTYVR-QGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61 (271)
Q Consensus 3 ~~~iVlPGD~L~~~eE-~~~~G~GtY~~-~g~I~ASv~G~v~i~~~~~~~~~~~~I~V~P~ 61 (271)
+++.|.||..|..--. .|-||.++-.- |..|||.+-|.|.+... ...++.|+|.|.
T Consensus 27 gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~---~~~r~~V~V~p~ 84 (91)
T 2zjr_T 27 GGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINK---GKGARFISIEAA 84 (91)
T ss_dssp TTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEE---TTTEEEEEECCC
T ss_pred CCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEeccceEEEEEEc---CCCcEEEEEEeC
Confidence 4578999999875321 49999999764 88999999999998731 124678999884
No 45
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=90.45 E-value=0.46 Score=35.54 Aligned_cols=56 Identities=14% Similarity=0.221 Sum_probs=42.4
Q ss_pred CCCeEecCCcccCCCC-CeeeCCCEEEe-CCEEEEEEeeEEEEeccccCCCcceEEEEee
Q psy6276 3 NPPICIPGQRICQLDS-DIVGGRGTYVR-QGYLYSTLAGTVSINKHVEDNKEVSVIEVSS 60 (271)
Q Consensus 3 ~~~iVlPGD~L~~~eE-~~~~G~GtY~~-~g~I~ASv~G~v~i~~~~~~~~~~~~I~V~P 60 (271)
++++|.||..|..--. .|-||.++-.- |..|||.+-|.|.+... ....++.|+|.|
T Consensus 18 ~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~--~~~~r~~VsV~p 75 (76)
T 3r8s_W 18 GGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVK--GPKNRKFISIEA 75 (76)
T ss_dssp TTCEECTTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEEEEE--TTTTEEEEEEEC
T ss_pred CCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEEEEe--CCCCCEEEEEEe
Confidence 4579999999865321 49999999875 88999999999998631 112357889987
No 46
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=85.12 E-value=1.8 Score=33.20 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=33.5
Q ss_pred cCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccc
Q psy6276 67 VPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVR 112 (271)
Q Consensus 67 iP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr 112 (271)
.|++|++|.+.|+.+.+..+.|+|. ....|++|++++.
T Consensus 58 ~l~~Ge~V~g~V~~i~~fG~fv~l~--------~~~eGlvhis~i~ 95 (101)
T 2bh8_A 58 NPQQGDRVEGKIKSITDFGIFIGLD--------GGIDGLVHLSDIS 95 (101)
T ss_dssp CCCTTCEEEEEEEECCSEEEEECTT--------SCEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEeCCcEEEEEcC--------CCceEEEEHHHCc
Confidence 6899999999999999999999873 3579999999875
No 47
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=80.28 E-value=3.2 Score=41.65 Aligned_cols=74 Identities=12% Similarity=0.100 Sum_probs=52.5
Q ss_pred cCCCCC--EEEEEEEEEecceEEEEEeeecCcccCCceeeEEecccccc---c-hhh--hH----hhhcCCCCCCEEEEE
Q psy6276 67 VPTPGD--VVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRA---T-EID--RI----EMYKCYRPGDIILAR 134 (271)
Q Consensus 67 iP~vGD--IVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~---t-e~d--~~----~m~~~f~~GDIV~Ak 134 (271)
-+++|+ +.-|+|++|+...++|.|. .....|++|.+++.. . .-| .. .....|++||.|..+
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~-------~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~Vk 627 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLV-------DNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVT 627 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEET-------TTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEE
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEc-------CCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEE
Confidence 457899 9999999999999999983 134789999988742 1 001 11 224579999999999
Q ss_pred -EecCC-CCceeeee
Q psy6276 135 -LPLKE-LHSYQLST 147 (271)
Q Consensus 135 -iS~~d-~~~~~LST 147 (271)
++.+. .+.+.++.
T Consensus 628 V~~vd~~~~~I~~~l 642 (644)
T 2id0_A 628 IAEVRMETRSIIARP 642 (644)
T ss_dssp EEEEETTTTEEEEEE
T ss_pred EEEEeCCCCEEEEEE
Confidence 66542 35566664
No 48
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=76.64 E-value=7.2 Score=31.79 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=25.7
Q ss_pred CCCCCEE---------EEEEEEEecceEEEEEeeecCcccCCceeeEEe
Q psy6276 68 PTPGDVV---------TARIMAVQQHLCKAHVISVGNTALSRTFRALLR 107 (271)
Q Consensus 68 P~vGDIV---------IGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr 107 (271)
.++||+| ||.|+..+++.+.|.|.+| ++.|-+|-||
T Consensus 8 ~~~g~~v~~~yKTG~YigeI~e~~~~~~lVkVlaV----lKHP~QGDLH 52 (130)
T 1y71_A 8 FEIGEIVTGIYKTGKYIGEVTNSRPGSYVVKVLAV----LKHPVQGDLH 52 (130)
T ss_dssp CCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEE----EECCCC----
T ss_pred CCccceeEEEEecceeEEEEEeecCCeEEEEEEEE----ecCCCccCCC
Confidence 5788888 7999999999999999976 3344444444
No 49
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=74.72 E-value=2.4 Score=31.11 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=32.4
Q ss_pred CCCeEecCCcccCCCC-CeeeCCCEEEe-CCEEEEEEeeEEEE
Q psy6276 3 NPPICIPGQRICQLDS-DIVGGRGTYVR-QGYLYSTLAGTVSI 43 (271)
Q Consensus 3 ~~~iVlPGD~L~~~eE-~~~~G~GtY~~-~g~I~ASv~G~v~i 43 (271)
+++.|.||..|...-. .|-||.++-.- |..|||.+.|.|.+
T Consensus 27 ~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl~~G~V~f 69 (69)
T 2ftc_O 27 EGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRY 69 (69)
T ss_pred CCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEccceEEeC
Confidence 3578999999875322 48899998764 88999999999863
No 50
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=65.84 E-value=6.3 Score=40.35 Aligned_cols=69 Identities=12% Similarity=0.008 Sum_probs=44.9
Q ss_pred CEEEEEEEEEecceEEEEEeeecCcccCCceeeEEeccccc--c-c---hhhhH-----h----hhcCCCCCCEEEEE-E
Q psy6276 72 DVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVR--A-T---EIDRI-----E----MYKCYRPGDIILAR-L 135 (271)
Q Consensus 72 DIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr--~-t---e~d~~-----~----m~~~f~~GDIV~Ak-i 135 (271)
.++-|.|++|+...+.|.|- .....|.+|.+++. . . +.... . ....|++||.|..+ +
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~-------~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~ 743 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVP-------KFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVR 743 (760)
T ss_dssp SEEEEEEEEEETTEEEEEET-------TTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC
T ss_pred eEEEEEEEEEECCeEEEEEe-------CCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEE
Confidence 79999999999999999983 23579999998763 1 1 00000 1 14679999999999 6
Q ss_pred ecCCC----Cceeeee
Q psy6276 136 PLKEL----HSYQLST 147 (271)
Q Consensus 136 S~~d~----~~~~LST 147 (271)
+.+.. +.+.||+
T Consensus 744 ~vd~~~~~~~kI~lsl 759 (760)
T 2vnu_D 744 SVMDPITSKRKAELLL 759 (760)
T ss_dssp --------CCEEEC--
T ss_pred EEECccccCCcEEEEe
Confidence 65432 3566654
No 51
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=56.65 E-value=15 Score=38.82 Aligned_cols=70 Identities=11% Similarity=0.012 Sum_probs=49.4
Q ss_pred CCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEecccccc---c---hhhhHh---------hhcCCCCCCEEEEE-
Q psy6276 71 GDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRA---T---EIDRIE---------MYKCYRPGDIILAR- 134 (271)
Q Consensus 71 GDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~---t---e~d~~~---------m~~~f~~GDIV~Ak- 134 (271)
|.+.-|.|++|+...++|.|. .....|.+|.+++.. . +..... ....|++||-|..+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~-------~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV 959 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVP-------KFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQV 959 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECT-------TTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEE
T ss_pred ceEEEEEEEEEcCCeEEEEEc-------CCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEE
Confidence 889999999999999999983 235789999988741 0 011101 23679999999999
Q ss_pred EecCC---C-Cceeeee
Q psy6276 135 LPLKE---L-HSYQLST 147 (271)
Q Consensus 135 iS~~d---~-~~~~LST 147 (271)
++... + +.+.||+
T Consensus 960 ~~vd~~~~~~~kI~Lsl 976 (977)
T 2wp8_J 960 RSVMDPITSKRKAELLL 976 (977)
T ss_dssp CCCCCSSSCCCCCCEEE
T ss_pred EEEcCcccCCCceEEEe
Confidence 66543 1 3566665
No 52
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=52.35 E-value=13 Score=31.37 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=22.0
Q ss_pred ccccCCCCCEEEEEEEEEecceEEEEEeeecC
Q psy6276 64 EVIVPTPGDVVTARIMAVQQHLCKAHVISVGN 95 (271)
Q Consensus 64 ~~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~ 95 (271)
.+..-++||+|+|+|.++..+. .+.+-|++.
T Consensus 48 ~r~~l~~GDlV~ArV~~~~~~~-~~~Ltc~~~ 78 (175)
T 2ja9_A 48 NRPTLQVGDLVYARVCTAEKEL-EAEIECFDS 78 (175)
T ss_dssp SCCCCCTTCEEEEEEEECCTTS-CCEEESSCT
T ss_pred hhccCCCCCEEEEEEEEecCCC-ceEEEeccc
Confidence 4555699999999999998753 344444443
No 53
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=51.91 E-value=0.84 Score=39.55 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=40.5
Q ss_pred CCCeEecCCcccCCCC-CeeeCCCEEE-eCCEEEEEEeeEEEEeccccCCCcceEEEEeeC
Q psy6276 3 NPPICIPGQRICQLDS-DIVGGRGTYV-RQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61 (271)
Q Consensus 3 ~~~iVlPGD~L~~~eE-~~~~G~GtY~-~~g~I~ASv~G~v~i~~~~~~~~~~~~I~V~P~ 61 (271)
+++.|.||..|..--. .|-||.++-. .|..|||.+-|.|++.. ....++.|+|.|.
T Consensus 84 gGq~V~aGnIIVRQRGTkfhPG~NVG~GkDhTLFAl~~G~VkF~~---~~~~Rk~VsV~p~ 141 (198)
T 3bbo_X 84 GDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEK---FGPDRKKISVYPR 141 (198)
T ss_dssp BCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCCSCCCCCSSS---SCCCCSCCCSSCC
T ss_pred CCeEeccCcEEEeccCceEcCCCCeeecCCCceEeccceEEEEEE---cCCCcEEEEEEeC
Confidence 3578999999875432 4889998865 48899999999998863 1123466777763
No 54
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=47.89 E-value=57 Score=22.57 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.1
Q ss_pred CCCCEEEEEEEEEecceEEEEE
Q psy6276 69 TPGDVVTARIMAVQQHLCKAHV 90 (271)
Q Consensus 69 ~vGDIVIGrVt~V~~~~a~VdI 90 (271)
-+||.|.++|+.+..++|.-++
T Consensus 45 lPGE~V~v~i~k~kk~~~~a~~ 66 (68)
T 1yez_A 45 KVGDEVRIKVERVLPKFAFASV 66 (68)
T ss_dssp CTTCEEEEEEEEECSSCEEEEE
T ss_pred CCCCEEEEEEEEecCCEEEEEE
Confidence 4699999999999999887665
No 55
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=45.64 E-value=16 Score=32.41 Aligned_cols=79 Identities=10% Similarity=-0.068 Sum_probs=42.7
Q ss_pred Ec-cCCCeeEec--cCccCchhhhhhhhhhhHHHhcccccceeeeeeccCceEEEeEeeccccceeeeeehhhhccccCc
Q psy6276 158 LS-EAASLFRSS--EKLTNDIEFLKQEKLKLYEELSSSQKENEILRQTTGDLEVRLMQMNEVKGEMEFKIKELNKKNQSE 234 (271)
Q Consensus 158 ~c-~cG~~Mvp~--s~~~~c~~~~~~e~rKla~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (271)
.| .||.++... ++...|+.|+...-..++ ..--+..-.+|++.+-- +-..-.|..+|---. -...|
T Consensus 109 fC~~CG~~~~~~~~~~~~~C~~C~~~~yp~~~-------~~viv~v~~~~~vLL~r-r~~~~~g~w~lPgG~---vE~GE 177 (269)
T 1vk6_A 109 YCGYCGHEMYPSKTEWAMLCSHCRERYYPQIA-------PCIIVAIRRDDSILLAQ-HTRHRNGVHTVLAGF---VEVGE 177 (269)
T ss_dssp BCTTTCCBEEECSSSSCEEESSSSCEECCCCE-------EEEEEEEEETTEEEEEE-ETTTCSSCCBCEEEE---CCTTC
T ss_pred ccccCCCcCccCCCceeeeCCCCCCEecCCCC-------cEEEEEEEeCCEEEEEE-ecCCCCCcEECCcCc---CCCCC
Confidence 57 899999775 388999999876654321 11112223345543321 111112333331111 12356
Q ss_pred hhhhhHHHhhhcc
Q psy6276 235 SKLSDTIRELNEE 247 (271)
Q Consensus 235 ~~~~~~~~~~~~~ 247 (271)
+-....+||+.||
T Consensus 178 t~eeAa~REv~EE 190 (269)
T 1vk6_A 178 TLEQAVAREVMEE 190 (269)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6677788999887
No 56
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=44.60 E-value=25 Score=29.15 Aligned_cols=63 Identities=10% Similarity=0.147 Sum_probs=38.6
Q ss_pred EEEEEEEEecceEEEEEeeecC--cc-----c-CCc-eeeEEecccc--ccchhhhHhhhcCCCCCCEEEEE-Ee
Q psy6276 74 VTARIMAVQQHLCKAHVISVGN--TA-----L-SRT-FRALLRRENV--RATEIDRIEMYKCYRPGDIILAR-LP 136 (271)
Q Consensus 74 VIGrVt~V~~~~a~VdI~~v~~--~~-----L-~~~-f~GiLr~sdv--r~te~d~~~m~~~f~~GDIV~Ak-iS 136 (271)
++|+|+++.+..+.|..+.-.. .. . ... ..|++.-.+- ....-........+++||.|.-- ++
T Consensus 47 lVG~V~~V~~~~S~V~Litd~~~~s~v~v~v~~~~~~~~Gil~G~~~~~~~l~l~~i~~~~~i~~GD~vvTSGl~ 121 (172)
T 2qf4_A 47 LIGSVSKVEENSTIVNLLTNTENADKISVKIQHGSTTIYGIIIGYDKENDVLKISQLNSNSDISAGDKVTTGGLG 121 (172)
T ss_dssp EEEEEEEECSSCEEEEETTCSBCCSCCEEEEEETTEEEEEEEEEEETTTTEEEEECCSCCCCCCTTCEEEEECCS
T ss_pred cEEEEEEECCCeEEEEEEECCCCCEEEEEEEEcCCCCEEEEEEccCCCCCeEEEEECCCCCCCCCCCEEEECCCC
Confidence 7899999999999998865433 21 2 233 5677765432 00001112334568899998777 64
No 57
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=41.57 E-value=62 Score=22.64 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.0
Q ss_pred CCCCEEEEEEEEEecceEEEEE
Q psy6276 69 TPGDVVTARIMAVQQHLCKAHV 90 (271)
Q Consensus 69 ~vGDIVIGrVt~V~~~~a~VdI 90 (271)
-+||.|.++|+++..++|.-++
T Consensus 47 lPGE~V~v~i~k~kk~~~~a~~ 68 (70)
T 1yvc_A 47 EKGSVINVKVTAVKEKFAFAER 68 (70)
T ss_dssp CTTCEEEEEEEEECSSCEEEEE
T ss_pred CCCCEEEEEEEEeeCCeEEEEE
Confidence 4699999999999999887665
No 58
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=41.54 E-value=25 Score=31.07 Aligned_cols=62 Identities=3% Similarity=0.169 Sum_probs=37.8
Q ss_pred EEEEEEEEEecceEEEEEeeecCc--c-----cCCc-eeeEEecccc--ccchhhhHhhhcCCCCCCEEEEE
Q psy6276 73 VVTARIMAVQQHLCKAHVISVGNT--A-----LSRT-FRALLRRENV--RATEIDRIEMYKCYRPGDIILAR 134 (271)
Q Consensus 73 IVIGrVt~V~~~~a~VdI~~v~~~--~-----L~~~-f~GiLr~sdv--r~te~d~~~m~~~f~~GDIV~Ak 134 (271)
=++|+|++|.+..+.|..+.-.+. . .... ..|++.-.+- ....-........+++||.|.--
T Consensus 108 GlVG~V~~V~~~~S~V~litd~~~~s~v~v~v~~s~~~~Gil~G~~~~~~~l~l~~i~~~~~i~~GD~VvTS 179 (255)
T 2j5u_A 108 GLIGKVTTTGAKSATVELLTSSDVKNRVSAKVQGKENAFGIINGYDSDTKLLELKQLPYDMKFKKGQKVVTS 179 (255)
T ss_dssp EEEEEEEEECSSCEEEEETTCCCTTCCEEEEECSSSCEEEEEEEEETTTTEEEEEEEETTSCCCTTCEEEEC
T ss_pred ccEEEEEEECCCeEEEEEEECCCCCeeEEEEEecCCcEEEEEEccCCCCCcEEEEECCCCCCCCCCCEEEEC
Confidence 378999999999999987643331 1 1233 6777765432 00011112345568999998766
No 59
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=41.50 E-value=10 Score=29.61 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=21.3
Q ss_pred EEEEc-cCCCeeEeccCcc-Cchhhhhhh
Q psy6276 155 VIALS-EAASLFRSSEKLT-NDIEFLKQE 181 (271)
Q Consensus 155 V~A~c-~cG~~Mvp~s~~~-~c~~~~~~e 181 (271)
+..+| .||.......... .||.|+...
T Consensus 72 ~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~ 100 (119)
T 2kdx_A 72 VELECKDCSHVFKPNALDYGVCEKCHSKN 100 (119)
T ss_dssp CEEECSSSSCEECSCCSTTCCCSSSSSCC
T ss_pred ceEEcCCCCCEEeCCCCCCCcCccccCCC
Confidence 46789 8999887767777 999998753
No 60
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=40.73 E-value=21 Score=30.76 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=29.0
Q ss_pred cccCCCCCEEEEEEEEEecceEEEEEeeecCcccCCceeeEEecccc
Q psy6276 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENV 111 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdv 111 (271)
..-|.+|+++.|+|+.++.....+-+. ..|...|+..++
T Consensus 124 VFrPf~GevL~G~V~~~s~~~Ig~~~~--------G~Fn~~Ip~~~i 162 (214)
T 2rf4_A 124 VWQPQVGDVLEGYIFIQSASHIGLLIH--------DAFNASIKKNNI 162 (214)
T ss_dssp EECCCTTCEEEEEECCCCSSCEEEEET--------TTEEEEECSTTS
T ss_pred EEecCCCCEEEEEEEEECCCcEEEEEe--------CCEEEEEcHHHC
Confidence 456999999999999999988777543 245556665554
No 61
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=38.42 E-value=9 Score=31.07 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=20.8
Q ss_pred Ec-cCCCeeEeccC------ccCchhhhhhhh
Q psy6276 158 LS-EAASLFRSSEK------LTNDIEFLKQEK 182 (271)
Q Consensus 158 ~c-~cG~~Mvp~s~------~~~c~~~~~~e~ 182 (271)
.| +||+.|+|... .+.|+.|+.++.
T Consensus 26 FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 26 FCRDCNNMLYPREDKENNRLLFECRTCSYVEE 57 (133)
T ss_dssp BCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCC
T ss_pred eCCCCCCEeeECccCCCceeEEECCCCCCcEE
Confidence 47 89999999853 699999998764
No 62
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.66 E-value=25 Score=27.61 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=33.0
Q ss_pred cccCCCCCEEEEEEEEEecce-EEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEEEe
Q psy6276 65 VIVPTPGDVVTARIMAVQQHL-CKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILARLP 136 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~~~-a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~AkiS 136 (271)
...|..| -++|+|+...++. +.|.+ .++. ...+-|+- +...+-.+.+||+|.+..+
T Consensus 9 ~~~p~eg-e~~g~V~~~lgn~~f~V~l--~nG~----~~la~i~G---------K~Rk~IwI~~GD~VlVe~~ 65 (111)
T 2dgy_A 9 HIVPSNQ-QQIVRVLRTPGNNLHEVET--AQGQ----RFLVSMPS---------KYRKNIWIKRGDFLIVDPI 65 (111)
T ss_dssp SCCCCSS-CEEEEEEECCSSSEEEEEC--TTSC----EEEEECCT---------TCCSCCCCCSSCEEEEEEC
T ss_pred ccCCCCC-eEEEEEEEeCCCCEEEEEe--CCCC----EEEEEech---------hhcccEEEcCCCEEEEEec
Confidence 4567765 5789999986654 55554 2332 12222221 1112556789999999943
No 63
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=34.49 E-value=36 Score=28.60 Aligned_cols=54 Identities=6% Similarity=-0.093 Sum_probs=37.7
Q ss_pred eeEEEEc-cCCCeeE-eccCccCchhhhhhhhhhhHHHhcccccceeeeeeccCceEEEeEe
Q psy6276 153 GVVIALS-EAASLFR-SSEKLTNDIEFLKQEKLKLYEELSSSQKENEILRQTTGDLEVRLMQ 212 (271)
Q Consensus 153 GVV~A~c-~cG~~Mv-p~s~~~~c~~~~~~e~rKla~~~~s~~~~~~~~~~~~~~~~~~~~~ 212 (271)
...+.-| .|...++ ..+....|+.|++....+ --+.-+.-...-||.+||.+.+
T Consensus 39 ~~~Y~ACp~CnKKV~~~~~g~~~CekC~~~~~~~------~RYil~~~i~D~TG~~wvt~F~ 94 (172)
T 3u50_C 39 KLYYYRCTCQGKSVLKYHGDSFFCESCQQFINPQ------VHLMLRAFVQDSTGTIPVMIFD 94 (172)
T ss_dssp CCEEEECTTSCCCEEEETTTEEEETTTTEECCCE------EEECEEEEEEETTEEEEEEECH
T ss_pred cEEehhchhhCCEeeeCCCCeEECCCCCCCCCce------EEEEEEEEEEeCCCCEEEEEEh
Confidence 4567778 7999998 455678999999972221 1333444455679999999984
No 64
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.74 E-value=15 Score=24.79 Aligned_cols=26 Identities=4% Similarity=-0.157 Sum_probs=20.1
Q ss_pred EEEc-cCCC--eeEeccCccCchhhhhhh
Q psy6276 156 IALS-EAAS--LFRSSEKLTNDIEFLKQE 181 (271)
Q Consensus 156 ~A~c-~cG~--~Mvp~s~~~~c~~~~~~e 181 (271)
+-.| +||. .|.+-.....|+.|+.+.
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 3457 8988 777777888999998763
No 65
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=31.27 E-value=1.5e+02 Score=23.07 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=34.8
Q ss_pred cccCCCCCEEEEEEEEEec-ceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEEEe
Q psy6276 65 VIVPTPGDVVTARIMAVQQ-HLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILARLP 136 (271)
Q Consensus 65 ~yiP~vGDIVIGrVt~V~~-~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~AkiS 136 (271)
...|..|.. +|+|+...+ .++.|... ++ ..+.+-++- +...+-...+||.|...++
T Consensus 26 ~~~~~~~e~-~G~Vi~~lgn~~y~V~~~--dG----~~~l~~i~G---------K~Rk~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 26 LVFKEEGQE-YGQVQRMLGNGRLDAYCF--DG----QKRLCHIRG---------KMRKKVWVNPGDIVLVSLR 82 (117)
T ss_dssp CCCCCTTEE-EEEEEEEEETTEEEEEET--TS----CEEEEECCH---------HHHHHSCCCTTCEEEEEEC
T ss_pred ccCCCCCEE-EEEEEEEcCCCEEEEEeC--CC----CEEEEEEcC---------ceecCCcCCCCCEEEEEEE
Confidence 346777765 899999988 77888652 22 123333332 1112455679999998843
No 66
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=30.37 E-value=17 Score=29.54 Aligned_cols=16 Identities=38% Similarity=0.926 Sum_probs=14.3
Q ss_pred hhhcCCCCCCEEEEEE
Q psy6276 120 EMYKCYRPGDIILARL 135 (271)
Q Consensus 120 ~m~~~f~~GDIV~Aki 135 (271)
.|...|++||||-||+
T Consensus 18 ~~~~~f~~GdlVwaK~ 33 (153)
T 4fu6_A 18 GMTRDFKPGDLIFAKM 33 (153)
T ss_dssp CSGGGCCTTCEEEECC
T ss_pred hcccCCCCCCEEEEeC
Confidence 5788899999999994
No 67
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=29.51 E-value=88 Score=22.80 Aligned_cols=39 Identities=13% Similarity=0.365 Sum_probs=25.2
Q ss_pred EEEEEEecceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE
Q psy6276 76 ARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR 134 (271)
Q Consensus 76 GrVt~V~~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak 134 (271)
|+|+++.+..+.|+. .|+.|.-++ .+-+...+||+|..-
T Consensus 7 ~kVvei~~~~A~vd~------------~Gv~r~V~l--------~Lv~~~~vGD~VLVH 45 (75)
T 2z1c_A 7 GKVIEVNGPVAVVDF------------GGVKREVRL--------DLMPDTKPGDWVIVH 45 (75)
T ss_dssp EEEEEEETTEEEEEE------------TTEEEEEEC--------TTSTTCCTTCEEEEE
T ss_pred EEEEEECCCEEEEEc------------CCEEEEEEE--------EEeCCCCCCCEEEEe
Confidence 788899777888887 344432221 122446899999765
No 68
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=29.07 E-value=21 Score=28.78 Aligned_cols=26 Identities=4% Similarity=-0.054 Sum_probs=19.0
Q ss_pred EEEEc-cCCCeeEecc-----------C----------ccCchhhhhh
Q psy6276 155 VIALS-EAASLFRSSE-----------K----------LTNDIEFLKQ 180 (271)
Q Consensus 155 V~A~c-~cG~~Mvp~s-----------~----------~~~c~~~~~~ 180 (271)
..++| .||....+.. . ...||.|+-.
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp CEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred CcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 35678 8998876655 4 6789999753
No 69
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=28.98 E-value=18 Score=25.82 Aligned_cols=25 Identities=8% Similarity=-0.021 Sum_probs=17.9
Q ss_pred Ec-cCCCeeEe-ccCccCchhhhhhhh
Q psy6276 158 LS-EAASLFRS-SEKLTNDIEFLKQEK 182 (271)
Q Consensus 158 ~c-~cG~~Mvp-~s~~~~c~~~~~~e~ 182 (271)
+| .||...-. ......||+||-.--
T Consensus 23 ~C~~Cg~~~~l~~~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 23 LCADCGARNTIQAKEVIRCRECGHRVM 49 (63)
T ss_dssp BCSSSCCBCCCCSSSCCCCSSSCCCCC
T ss_pred ECCCCCCeeecCCCCceECCCCCcEEE
Confidence 56 89887743 447899999986543
No 70
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=28.67 E-value=96 Score=25.41 Aligned_cols=55 Identities=15% Similarity=0.129 Sum_probs=33.0
Q ss_pred ccCCCCCEEEEEEEEEecce-EEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEEEe
Q psy6276 66 IVPTPGDVVTARIMAVQQHL-CKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILARLP 136 (271)
Q Consensus 66 yiP~vGDIVIGrVt~V~~~~-a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~AkiS 136 (271)
..|.. .-++|+|+...++. +.|.+ .++.. ..+.|+- +...+-.+.+||+|...++
T Consensus 26 ~~p~e-ge~~g~V~e~lgn~~f~V~l--~nG~~----~La~I~G---------KmRk~IwI~~GD~VlVe~~ 81 (143)
T 1d7q_A 26 VFKED-GQEYAQVIKMLGNGRLEAMC--FDGVK----RLCHIRG---------KLRKKVWINTSDIILVGLR 81 (143)
T ss_dssp CCCCT-TEEEEEEEEECSSSEEEEEE--TTTEE----EEEECCS---------GGGGSCCCCTTCEEEEECS
T ss_pred cCCCC-CEEEEEEEEEcCCCEEEEEe--CCCCE----EEEEecc---------cceeeEEecCCCEEEEeec
Confidence 36665 46889999996654 55555 23321 2222221 1123667799999999944
No 71
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=28.37 E-value=41 Score=26.85 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=31.2
Q ss_pred eEEEEeeCCCccccCCCCCEEEEEEEEEecc---eEEEEEeeecCcc
Q psy6276 54 SVIEVSSYKKEVIVPTPGDVVTARIMAVQQH---LCKAHVISVGNTA 97 (271)
Q Consensus 54 ~~I~V~P~~~~~yiP~vGDIVIGrVt~V~~~---~a~VdI~~v~~~~ 97 (271)
.-|+|-|..-.++-.+.||+|.|+|..-... ++.+.|.+|++.+
T Consensus 77 ~DiyVs~~~irrf~lr~GD~V~g~vr~~~~~ek~~~l~~v~~vng~~ 123 (130)
T 1a62_A 77 DDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNFDK 123 (130)
T ss_dssp TCEEECHHHHHHTTCCTTCEEEEEEECCCTTCCSEEEEEEEEETTBC
T ss_pred CCEEECHHHHhHhCCCCCCEEEEEEeCCCCCCcccceeEEEeECCCC
Confidence 4578877533567789999999999865432 3677777777654
No 72
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=27.90 E-value=65 Score=23.74 Aligned_cols=49 Identities=14% Similarity=0.200 Sum_probs=29.3
Q ss_pred EEEEEEEEe-cceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEEEe
Q psy6276 74 VTARIMAVQ-QHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILARLP 136 (271)
Q Consensus 74 VIGrVt~V~-~~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~AkiS 136 (271)
+.|+|+... +.++.|.+. ++. .+.+-++- . -..-+-.+.+||.|..+++
T Consensus 16 ~~G~Vik~l~n~~f~V~l~--nG~----~~~c~i~G----K----~Rk~~I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELE--NGH----KVLAHISG----K----MRQHYIRILPEDRVVVELS 65 (79)
T ss_dssp EEEEEEEEETTTEEEEEET--TSC----EEEEEECH----H----HHHTTCCCCTTCEEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeC--CCC----EEEEEeCc----c----eecCCccCCCCCEEEEEEC
Confidence 679999998 777888763 222 12232221 0 0011335799999998855
No 73
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=26.94 E-value=66 Score=24.44 Aligned_cols=50 Identities=26% Similarity=0.206 Sum_probs=32.0
Q ss_pred ccCchhhhhhhh-hhhHHHhcccccc-----eeeeeeccCceEEEeEeeccccceeeeeehh
Q psy6276 171 LTNDIEFLKQEK-LKLYEELSSSQKE-----NEILRQTTGDLEVRLMQMNEVKGEMEFKIKE 226 (271)
Q Consensus 171 ~~~c~~~~~~e~-rKla~~~~s~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (271)
..+|..|++.-+ .-++.+|-++... -....+++|.++|.+ .|+.-|.-++
T Consensus 7 I~YC~~C~y~~ra~~laqeLl~~Fp~~l~V~~~l~p~~~G~FEV~v------ng~lV~SKk~ 62 (96)
T 2npb_A 7 VVYSGACGYKPKYLQLKEKLEHEFPGCLDICGEGTPQVTGFFEVTV------AGKLVHSKKR 62 (96)
T ss_dssp EECCCCSCHHHHHHHHHHHHHHHSBTTEEEEECCCSSCCSCCEEEE------TTEEEEETTT
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCcceEEEEEEcCCCCcEEEEEE------CCEEEEEEec
Confidence 567888988776 4477776555432 223346789999976 4676665443
No 74
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=26.78 E-value=50 Score=23.30 Aligned_cols=49 Identities=10% Similarity=0.271 Sum_probs=27.8
Q ss_pred EEEEEEEEec-ceEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEEEe
Q psy6276 74 VTARIMAVQQ-HLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILARLP 136 (271)
Q Consensus 74 VIGrVt~V~~-~~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~AkiS 136 (271)
+.|+|+...+ .++.|... ++..+....+|-+|.. .-...+||.|...++
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~--~g~~~~~~i~Gk~Rk~------------~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELE--NGHVVTAHISGKMRKN------------YIRILTGDKVTVELT 57 (71)
T ss_dssp CCEEEEEECSSSEEEEEET--TSCEEEEEECSSGGGT------------TCCCCTTCEECCEEC
T ss_pred EEEEEEEEeCCcEEEEEEC--CCCEEEEEEcceEecc------------CccCCCCCEEEEEEe
Confidence 3699999988 77888642 2222112223322221 123469999988743
No 75
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=26.72 E-value=2e+02 Score=21.58 Aligned_cols=25 Identities=12% Similarity=0.088 Sum_probs=18.1
Q ss_pred CCCCCCEEEEE--EecCCCCceeeeec
Q psy6276 124 CYRPGDIILAR--LPLKELHSYQLSTA 148 (271)
Q Consensus 124 ~f~~GDIV~Ak--iS~~d~~~~~LST~ 148 (271)
.|.|||+|..+ +...+...+.|++.
T Consensus 66 ~l~~Gdvv~i~g~vk~~~~g~~eL~~g 92 (105)
T 3dm3_A 66 DVGRGDYVRVRGYIREGYYGGLECTAN 92 (105)
T ss_dssp CCCTTCEEEEEEEEEECTTSSEEEEEE
T ss_pred ccCCCCEEEEEEEEEEccCCCEEEEeC
Confidence 79999999887 65554345777764
No 76
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.36 E-value=18 Score=28.19 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=20.8
Q ss_pred Ec-cCCCeeEeccC------ccCchhhhhhhhh
Q psy6276 158 LS-EAASLFRSSEK------LTNDIEFLKQEKL 183 (271)
Q Consensus 158 ~c-~cG~~Mvp~s~------~~~c~~~~~~e~r 183 (271)
.| .||+.|+|... .+.|+.|+.....
T Consensus 6 FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~ 38 (113)
T 3h0g_I 6 YCIECNNMLYPREDKVDRVLRLACRNCDYSEIA 38 (113)
T ss_dssp CCSSSCCCCEECCCTTTCCCCEECSSSCCEECC
T ss_pred eCcCCCCEeeEcccCCCCeeEEECCCCCCeEEc
Confidence 57 89999999753 6899999986643
No 77
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=25.48 E-value=79 Score=24.73 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=33.3
Q ss_pred ccCchhhhhhhh-hhhHHHhccccc----ceeeeeeccCceEEEeEeeccccceeeeeeh
Q psy6276 171 LTNDIEFLKQEK-LKLYEELSSSQK----ENEILRQTTGDLEVRLMQMNEVKGEMEFKIK 225 (271)
Q Consensus 171 ~~~c~~~~~~e~-rKla~~~~s~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (271)
..+|..|+|--+ .-+|.+|-++-. .-+..-++.|.++|.+ .|+.-|.-|
T Consensus 17 I~YC~~C~w~lRa~~laqeLl~tF~~~l~eVsL~Pg~gG~FeV~v------dg~lVwsRk 70 (107)
T 3dex_A 17 IEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRV------DDEVVWDRR 70 (107)
T ss_dssp EEEETTTTCHHHHHHHHHHHHHHSTTTEEEEEEEEESSSCEEEEE------TTEEEEEHH
T ss_pred EEECCCCCChHHHHHHHHHHHHhcccccceEEEEeCCCceEEEEE------CCEEEEEec
Confidence 668888988877 346776544433 3445668999999976 467666554
No 78
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=25.37 E-value=59 Score=26.26 Aligned_cols=81 Identities=9% Similarity=-0.052 Sum_probs=39.0
Q ss_pred EEc-cCCCeeEec---c---CccCchhhhhhhhhhhHHHhcccccceeeeeeccCceEEEeEeeccccceeeeeehhhhc
Q psy6276 157 ALS-EAASLFRSS---E---KLTNDIEFLKQEKLKLYEELSSSQKENEILRQTTGDLEVRLMQMNEVKGEMEFKIKELNK 229 (271)
Q Consensus 157 A~c-~cG~~Mvp~---s---~~~~c~~~~~~e~rKla~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (271)
..| .||..+... + ....|+.|++..-.. .....--+.. .+|++.+---......|..+|---.
T Consensus 4 ~~C~~CG~~~~~~~~~G~~~~~~~~~~~~~~~~~~------~~~~v~~ii~-~~~~vLL~~r~~~~~~g~w~lPgG~--- 73 (189)
T 3cng_A 4 KFCSQCGGEVILRIPEGDTLPRYICPKCHTIHYQN------PKVIVGCIPE-WENKVLLCKRAIAPYRGKWTLPAGF--- 73 (189)
T ss_dssp CBCTTTCCBCEEECCTTCSSCEEEETTTTEEECCC------CEEEEEEEEE-ETTEEEEEEESSSSSTTCEECSEEE---
T ss_pred ccCchhCCccccccccCCCCcceECCCCCCccCCC------CceEEEEEEE-eCCEEEEEEccCCCCCCeEECceee---
Confidence 468 899999542 2 345788887544321 0011111112 2555443221111113333332111
Q ss_pred cccCchhhhhHHHhhhcc
Q psy6276 230 KNQSESKLSDTIRELNEE 247 (271)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~ 247 (271)
-...|+-....+|||.||
T Consensus 74 ve~gEs~~~aa~REl~EE 91 (189)
T 3cng_A 74 MENNETLVQGAARETLEE 91 (189)
T ss_dssp CCTTCCHHHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHH
Confidence 123467777889999887
No 79
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=24.81 E-value=52 Score=25.44 Aligned_cols=57 Identities=12% Similarity=0.213 Sum_probs=34.1
Q ss_pred ccCCC-CCEEEEEEEEEecc-eEEEEEeeecCcccCCceeeEEeccccccchhhhHhhhcCCCCCCEEEEE-Eec
Q psy6276 66 IVPTP-GDVVTARIMAVQQH-LCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPL 137 (271)
Q Consensus 66 yiP~v-GDIVIGrVt~V~~~-~a~VdI~~v~~~~L~~~f~GiLr~sdvr~te~d~~~m~~~f~~GDIV~Ak-iS~ 137 (271)
.+|.. ..-++|+|+...++ .+.|.+. +|. ...+-|+- +...+-.+.+||+|... ...
T Consensus 13 ~~P~~~e~e~~g~V~~~lgn~~~~V~l~--nG~----~~la~i~G---------KmRk~IwI~~GD~VlVe~~~y 72 (102)
T 1jt8_A 13 RIPRKEENEILGIIEQMLGASRVRVRCL--DGK----TRLGRIPG---------RLKNRIWVREGDVVIVKPWEV 72 (102)
T ss_dssp CCSCCSSCCEEEEEECSSCSSEEEEEEE--TTE----EEEEECCH---------HHHHHHCCCSCEEEEECCBCC
T ss_pred ccCCCCCCEEEEEEEEEcCCCEEEEEEC--CCC----EEEEEEcc---------cceeeEEecCCCEEEEEeccC
Confidence 46652 35688999998555 4666653 222 12222221 22346778999999999 443
No 80
>1xjv_A Protection of telomeres 1; protein-DNA complex, single-stranded DNA, transcription/DNA complex; 1.73A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 3kjo_A 3kjp_A
Probab=24.71 E-value=1.9e+02 Score=25.54 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=12.6
Q ss_pred hhhcCCCCCCEEEEE-Ee
Q psy6276 120 EMYKCYRPGDIILAR-LP 136 (271)
Q Consensus 120 ~m~~~f~~GDIV~Ak-iS 136 (271)
.+-..+.+||||+.+ +.
T Consensus 63 ~LP~v~~~GDII~l~~vk 80 (294)
T 1xjv_A 63 ALPIIYKNGDIVRFHRLK 80 (294)
T ss_dssp GSCCCCSTTCEEEEEEEE
T ss_pred HCCCCCCCCCEEEEEEEE
Confidence 344455999999999 54
No 81
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=24.48 E-value=23 Score=24.05 Aligned_cols=25 Identities=4% Similarity=-0.261 Sum_probs=17.7
Q ss_pred Ec-cCCCeeEecc----CccCchhhhhhhh
Q psy6276 158 LS-EAASLFRSSE----KLTNDIEFLKQEK 182 (271)
Q Consensus 158 ~c-~cG~~Mvp~s----~~~~c~~~~~~e~ 182 (271)
.| +||..+-... +..+||-||..--
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyrii 34 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYKII 34 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCSCE
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcEEE
Confidence 36 7888775544 6889999986543
No 82
>2jro_A Uncharacterized protein; solution structure, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium; NMR {Shewanella oneidensis}
Probab=24.37 E-value=24 Score=26.31 Aligned_cols=44 Identities=30% Similarity=0.297 Sum_probs=30.2
Q ss_pred ccCceEEEeEeeccccceeeeeehhhhccccCchhhhhHHHhhhcccccc
Q psy6276 202 TTGDLEVRLMQMNEVKGEMEFKIKELNKKNQSESKLSDTIRELNEENIGL 251 (271)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (271)
-.|+|||.-+ |..||.--.+.--..+..+--.++.|+|++=-.|
T Consensus 20 F~Gri~I~g~------G~FeFd~GkillP~~~d~~~~~~~sEIN~~I~~L 63 (78)
T 2jro_A 20 LTGVIWVKDL------GRLEFEKGRFLLPRKSLPKVKQAILELNELIEAQ 63 (78)
T ss_dssp CSEEEEETTT------EEEEEETTEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEec------ccEEEcCCEEeCCccccHHHHHHHHHHHHHHHHH
Confidence 4799999754 7777765555555556666777888988764333
No 83
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=24.19 E-value=67 Score=25.13 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=33.4
Q ss_pred ccCchhhhhhhh-hhhHHHhccc----ccceeeeeeccCceEEEeEeeccccceeeeeehh
Q psy6276 171 LTNDIEFLKQEK-LKLYEELSSS----QKENEILRQTTGDLEVRLMQMNEVKGEMEFKIKE 226 (271)
Q Consensus 171 ~~~c~~~~~~e~-rKla~~~~s~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (271)
..+|..|+|--+ .-+|.+|-++ ...-+..-+++|.++|.+ .|+.-|.-|+
T Consensus 13 I~YC~~C~w~lRa~~laqeLl~tF~~~l~eV~L~P~~~G~FeV~v------ng~lVwsRk~ 67 (108)
T 2ojl_A 13 IQYCTQCQWLLRAAWMAQELLSTFGADLGEVALVPGTGGVFRIHY------NGAPLWDREV 67 (108)
T ss_dssp EEEETTTTCHHHHHHHHHHHHHHHGGGSSEEEEEEECTTCEEEEE------TTEEEEEHHH
T ss_pred EEECCCCCChHHHHHHHHHHHHhcCcccceEEEEeCCCceEEEEE------CCEEEEEEcc
Confidence 567888888776 3466664333 344555678999999987 4777665443
No 84
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=23.54 E-value=32 Score=24.85 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=17.3
Q ss_pred EEc-cCCCeeEe-ccCccCchhhhhh
Q psy6276 157 ALS-EAASLFRS-SEKLTNDIEFLKQ 180 (271)
Q Consensus 157 A~c-~cG~~Mvp-~s~~~~c~~~~~~ 180 (271)
-+| .||...-. ......||+||..
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~R 54 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGHR 54 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCce
Confidence 367 89988533 3467899999873
No 85
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=23.06 E-value=28 Score=26.14 Aligned_cols=15 Identities=33% Similarity=0.995 Sum_probs=12.5
Q ss_pred hhcCCCCCCEEEEEE
Q psy6276 121 MYKCYRPGDIILARL 135 (271)
Q Consensus 121 m~~~f~~GDIV~Aki 135 (271)
|...|.+||||-||+
T Consensus 2 ~p~~f~~GdlVwaK~ 16 (94)
T 3qby_A 2 MPHAFKPGDLVFAKM 16 (94)
T ss_dssp CCCCCCTTCEEEECC
T ss_pred CCCcCccCCEEEEec
Confidence 446799999999994
No 86
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.05 E-value=21 Score=28.97 Aligned_cols=23 Identities=4% Similarity=-0.135 Sum_probs=15.1
Q ss_pred Ec-cCCCeeEeccCccCchhhhhh
Q psy6276 158 LS-EAASLFRSSEKLTNDIEFLKQ 180 (271)
Q Consensus 158 ~c-~cG~~Mvp~s~~~~c~~~~~~ 180 (271)
+| .||...-.......||.||..
T Consensus 134 ~C~~Cg~~~~~~~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 134 VCIGCGRKFSTLPPGGVCPDCGSK 157 (165)
T ss_dssp EESSSCCEESSCCGGGBCTTTCCB
T ss_pred ECCCCCCcccCCCCCCcCCCCCCc
Confidence 46 688766433445678888865
No 87
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=22.81 E-value=66 Score=22.72 Aligned_cols=24 Identities=13% Similarity=0.152 Sum_probs=18.7
Q ss_pred cCCCCCEEEEEEEEEecceEEEEE
Q psy6276 67 VPTPGDVVTARIMAVQQHLCKAHV 90 (271)
Q Consensus 67 iP~vGDIVIGrVt~V~~~~a~VdI 90 (271)
..++||.|.++|.++....-++++
T Consensus 45 ~~~~Gd~V~v~V~~vd~~~~~i~l 68 (80)
T 2k52_A 45 NLNVGDEIIVQAIDVRPEKREIDF 68 (80)
T ss_dssp GCCTTCEEEEEEEEEETTTTEEEE
T ss_pred eeCCCCEEEEEEEEEECCCCEEEE
Confidence 579999999999999875444443
No 88
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=22.34 E-value=56 Score=25.33 Aligned_cols=50 Identities=18% Similarity=0.065 Sum_probs=33.0
Q ss_pred ccCchhhhhhhh-hhhHHHhcccc----cceeeeeeccCceEEEeEeeccccceeeeeehh
Q psy6276 171 LTNDIEFLKQEK-LKLYEELSSSQ----KENEILRQTTGDLEVRLMQMNEVKGEMEFKIKE 226 (271)
Q Consensus 171 ~~~c~~~~~~e~-rKla~~~~s~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (271)
..+|..|++.-+ .-+|.+|-++. ..-+..-+++|.++|.+ .|+.-|.-|+
T Consensus 10 I~YC~~C~~~~Ra~~laqeLl~tF~~~l~~v~l~P~~~G~FEV~v------ng~lV~SKk~ 64 (104)
T 2oka_A 10 ITYCTQCQWLLRAAWLAQELLSTFADDLGKVCLEPGTGGVFRITC------DGVQVWERKA 64 (104)
T ss_dssp EEEETTTTCHHHHHHHHHHHHHHSTTTCSEEEEEEECTTCEEEEE------TTEEEEEHHH
T ss_pred EEECCCCCChHHHHHHHHHHHHHcCcccceEEEEeCCCceEEEEE------CCEEEEEEec
Confidence 567888888776 33666644433 34566678999999976 3676665443
No 89
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=21.61 E-value=54 Score=25.42 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=32.0
Q ss_pred ccCchhhhhhhh-hhhHHHhcccc----cceeeeeeccCceEEEeEeeccccceeeeeeh
Q psy6276 171 LTNDIEFLKQEK-LKLYEELSSSQ----KENEILRQTTGDLEVRLMQMNEVKGEMEFKIK 225 (271)
Q Consensus 171 ~~~c~~~~~~e~-rKla~~~~s~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (271)
..+|..|++.-+ .-+|.+|-++. ..-+..-+++|.++|.+ .|+.-|.-+
T Consensus 12 I~YC~~C~~~~Ra~~laqeLl~tF~~~l~~V~l~P~~~G~FEV~v------ng~lV~SKk 65 (105)
T 2fa8_A 12 IRYCTQCNWLLRAGWMAQEILQTFASDIGEVSLIPSTGGLFEITV------DGTIIWERK 65 (105)
T ss_dssp EEEETTTTCHHHHHHHHHHHHHHHGGGCSEEEEEEECTTCEEEEE------TTEEEEEHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcCcccceEEEEcCCCcEEEEEE------CCEEEEEec
Confidence 567888888776 33666654433 34556678999999987 466666444
No 90
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=21.25 E-value=59 Score=25.24 Aligned_cols=50 Identities=16% Similarity=0.059 Sum_probs=33.0
Q ss_pred ccCchhhhhhhh-hhhHHHhcccc----cceeeeeeccCceEEEeEeeccccceeeeeehh
Q psy6276 171 LTNDIEFLKQEK-LKLYEELSSSQ----KENEILRQTTGDLEVRLMQMNEVKGEMEFKIKE 226 (271)
Q Consensus 171 ~~~c~~~~~~e~-rKla~~~~s~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (271)
..+|..|++.-+ .-+|.+|-++. ..-+..-+++|.++|.+ .|+.-|.-++
T Consensus 8 I~YC~~C~w~~Ra~~laqeLl~tF~~~l~~v~l~P~~~G~FEV~v------ng~lV~SKk~ 62 (105)
T 2p0g_A 8 IYYCRQCNWMLRSAWLSQELLHTFSEEIEYVALHPDTGGRFEIFC------NGVQIWERKQ 62 (105)
T ss_dssp EEEETTTTCHHHHHHHHHHHHHHTTTTEEEEEEEEESTTCEEEEE------TTEEEEEHHH
T ss_pred EEECCCCCChHHHHHHHHHHHHHcCcccceEEEEeCCCceEEEEE------CCEEEEEEec
Confidence 457888888776 33666654433 34566678999999976 3676665443
No 91
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=20.26 E-value=36 Score=25.39 Aligned_cols=23 Identities=0% Similarity=-0.309 Sum_probs=16.1
Q ss_pred Ec-cCCCeeEe--ccCccCchhhhhh
Q psy6276 158 LS-EAASLFRS--SEKLTNDIEFLKQ 180 (271)
Q Consensus 158 ~c-~cG~~Mvp--~s~~~~c~~~~~~ 180 (271)
.| .||..++. ......|+.|+.+
T Consensus 29 ~Cp~CG~~~v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 29 ACPNCGEDRVDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp ECSSSCCEEEEEEETTEEEETTTCCE
T ss_pred cCCCCCCcceeccCCCeEECCCCCCE
Confidence 46 78886643 3457788888875
Done!