Your job contains 1 sequence.
>psy6276
MSNPPICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSS
YKKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIE
MYKCYRPGDIILARLPLKELHSYQLSTAENELGVVIALSEAASLFRSSEKLTNDIEFLKQ
EKLKLYEELSSSQKENEILRQTTGDLEVRLMQMNEVKGEMEFKIKELNKKNQSESKLSDT
IRELNEENIGLKQKVELQEAENQLIQTTKNE
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6276
(271 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-080926-3 - symbol:exosc1 "exosome component... 355 1.8e-32 1
UNIPROTKB|Q5E9E9 - symbol:EXOSC1 "Uncharacterized protein... 347 1.3e-31 1
UNIPROTKB|E2RT56 - symbol:EXOSC1 "Uncharacterized protein... 347 1.3e-31 1
MGI|MGI:1913833 - symbol:Exosc1 "exosome component 1" spe... 346 1.6e-31 1
UNIPROTKB|F1S8Y4 - symbol:EXOSC1 "Uncharacterized protein... 338 1.1e-30 1
UNIPROTKB|Q9Y3B2 - symbol:EXOSC1 "Exosome complex compone... 336 1.8e-30 1
FB|FBgn0032346 - symbol:Csl4 "Csl4" species:7227 "Drosoph... 330 7.9e-30 1
UNIPROTKB|B1AMU3 - symbol:EXOSC1 "Exosome complex compone... 210 5.8e-27 2
UNIPROTKB|B1AMU4 - symbol:EXOSC1 "Exosome complex compone... 254 9.0e-22 1
DICTYBASE|DDB_G0285377 - symbol:DDB_G0285377 "3'-5' exori... 252 1.5e-21 1
TAIR|locus:2152297 - symbol:AT5G38890 species:3702 "Arabi... 252 1.5e-21 1
UNIPROTKB|G4ML19 - symbol:MGG_08628 "3'-5' exoribonucleas... 176 1.5e-19 2
UNIPROTKB|F1P3Y1 - symbol:EXOSC1 "Uncharacterized protein... 223 1.7e-18 1
GENEDB_PFALCIPARUM|MAL7P1.104 - symbol:MAL7P1.104 "3'-5' ... 189 6.9e-15 1
UNIPROTKB|Q8IBQ2 - symbol:MAL7P1.104 "3'-5' exoribonuclea... 189 6.9e-15 1
WB|WBGene00012966 - symbol:exos-1 species:6239 "Caenorhab... 184 2.3e-14 1
ASPGD|ASPL0000007077 - symbol:AN11250 species:162425 "Eme... 133 3.8e-13 2
POMBASE|SPCC1840.11 - symbol:csl4 "exosome subunit Csl4 (... 169 9.1e-13 1
SGD|S000005176 - symbol:CSL4 "Exosome non-catalytic core ... 152 1.8e-09 2
UNIPROTKB|B1AMU7 - symbol:EXOSC1 "Exosome complex compone... 132 1.7e-08 1
CGD|CAL0001085 - symbol:orf19.1026 species:5476 "Candida ... 140 2.2e-08 2
UNIPROTKB|Q59VR7 - symbol:CSL4 "Likely exosome component ... 140 2.2e-08 2
WB|WBGene00022232 - symbol:exos-2 species:6239 "Caenorhab... 121 4.0e-05 1
POMBASE|SPAC2F7.14c - symbol:SPAC2F7.14c "exosome subunit... 112 0.00054 1
UNIPROTKB|F1LYS6 - symbol:F1LYS6 "Uncharacterized protein... 91 0.00065 1
>ZFIN|ZDB-GENE-080926-3 [details] [associations]
symbol:exosc1 "exosome component 1" species:7955
"Danio rerio" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR019495 Pfam:PF10447
ZFIN:ZDB-GENE-080926-3 GO:GO:0005730 GO:GO:0003723 GO:GO:0000178
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG1096
HOGENOM:HOG000177330 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000015287 CTD:51013 HOVERGEN:HBG051516
OMA:AGCLTKS OrthoDB:EOG40ZQZP InterPro:IPR025721 Pfam:PF14382
EMBL:BX119918 IPI:IPI00512843 RefSeq:NP_001139039.1
UniGene:Dr.53954 Ensembl:ENSDART00000083633 GeneID:558857
NextBio:20882664 Uniprot:B8A4H5
Length = 194
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 72/165 (43%), Positives = 112/165 (67%)
Query: 1 MSNPPICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSS 60
MS +C+PG+R+C + D + G GTY+R GY++++LAG V + K+ + +E+ VI V
Sbjct: 1 MSPMKLCVPGERLCSTE-DCIPGTGTYLRHGYIFASLAGYV-LRKN--EGEELPVISVVR 56
Query: 61 YKKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIE 120
+ ++P G +VT ++ ++ K H++ VG+T L FR +RRE+VRATE D++E
Sbjct: 57 ETEAQLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDRFRGTIRREDVRATEKDKVE 116
Query: 121 MYKCYRPGDIILAR-LPLKELHS-YQLSTAENELGVVIALSEAAS 163
YK +RPGDI+LA+ + L ++ S Y L+TAENELGVV+A SEA +
Sbjct: 117 TYKSFRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSEAGA 161
>UNIPROTKB|Q5E9E9 [details] [associations]
symbol:EXOSC1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR019495 Pfam:PF10447 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 eggNOG:COG1096 HOGENOM:HOG000177330
KO:K07573 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000015287 CTD:51013 HOVERGEN:HBG051516
OMA:AGCLTKS OrthoDB:EOG40ZQZP InterPro:IPR025721 Pfam:PF14382
EMBL:DAAA02058916 EMBL:BC133440 EMBL:BT020971 IPI:IPI00703481
RefSeq:NP_001015529.1 UniGene:Bt.28578 SMR:Q5E9E9 STRING:Q5E9E9
Ensembl:ENSBTAT00000016879 GeneID:506018 KEGG:bta:506018
InParanoid:Q5E9E9 NextBio:20867414 Uniprot:Q5E9E9
Length = 195
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 70/162 (43%), Positives = 107/162 (66%)
Query: 4 PPI--CIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61
PP+ CIPG+R+C L+ G GTY R GY++S+LAG ++ +N + VI V
Sbjct: 3 PPVRYCIPGERLCNLEEGSPGS-GTYTRHGYIFSSLAGCLT---KTSENGALPVISVMRE 58
Query: 62 KKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEM 121
+ ++P G +VT ++ ++ K H++ VG+T L +FR +R+E+VRATE D++E+
Sbjct: 59 TESQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEI 118
Query: 122 YKCYRPGDIILAR-LPLKELHS-YQLSTAENELGVVIALSEA 161
YK +RPGDI+LA+ + L + S Y L+TAENELGVV+A SE+
Sbjct: 119 YKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSES 160
>UNIPROTKB|E2RT56 [details] [associations]
symbol:EXOSC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000178 "exosome (RNase complex)" evidence=IEA]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0003723 GO:GO:0000178
Gene3D:2.40.50.140 InterPro:IPR012340 InterPro:IPR022967
SMART:SM00316 GeneTree:ENSGT00390000015287 OMA:AGCLTKS
InterPro:IPR025721 Pfam:PF14382 EMBL:AAEX03015445
Ensembl:ENSCAFT00000014417 Uniprot:E2RT56
Length = 207
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 70/162 (43%), Positives = 108/162 (66%)
Query: 4 PPI--CIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61
PP+ CIPG+R+C L+ G GTY R GY++S+LAG ++ + +N + VI V
Sbjct: 15 PPVRYCIPGERLCNLEEGSPGS-GTYTRHGYIFSSLAGCLTKSS---ENGALPVISVMRE 70
Query: 62 KKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEM 121
+ ++P G +VT ++ ++ K H++ VG+T L +FR +R+E+VRATE D++E+
Sbjct: 71 TESQLLPDVGTIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRKEDVRATEKDKVEI 130
Query: 122 YKCYRPGDIILAR-LPLKELHS-YQLSTAENELGVVIALSEA 161
YK +RPGDI+LA+ + L + S Y L+TAENELGVV+A SE+
Sbjct: 131 YKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSES 172
>MGI|MGI:1913833 [details] [associations]
symbol:Exosc1 "exosome component 1" species:10090 "Mus
musculus" [GO:0000178 "exosome (RNase complex)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006396 "RNA processing" evidence=ISO] InterPro:IPR019495
Pfam:PF10447 PROSITE:PS50126 MGI:MGI:1913833 GO:GO:0005737
GO:GO:0005730 GO:GO:0003723 GO:GO:0000178 GO:GO:0006364
eggNOG:COG1096 HOGENOM:HOG000177330 KO:K07573 InterPro:IPR022967
SMART:SM00316 GeneTree:ENSGT00390000015287 CTD:51013
HOVERGEN:HBG051516 OMA:AGCLTKS OrthoDB:EOG40ZQZP InterPro:IPR025721
Pfam:PF14382 EMBL:AK002930 EMBL:AK006018 EMBL:BC024423
IPI:IPI00118360 IPI:IPI00283868 RefSeq:NP_001158033.1
RefSeq:NP_079920.1 UniGene:Mm.289086 ProteinModelPortal:Q9DAA6
SMR:Q9DAA6 STRING:Q9DAA6 PhosphoSite:Q9DAA6 PaxDb:Q9DAA6
PRIDE:Q9DAA6 DNASU:66583 Ensembl:ENSMUST00000075280
Ensembl:ENSMUST00000112123 GeneID:66583 KEGG:mmu:66583
UCSC:uc008hmm.2 UCSC:uc008hmn.2 InParanoid:Q9DAA6 NextBio:322064
Bgee:Q9DAA6 CleanEx:MM_EXOSC1 Genevestigator:Q9DAA6
GermOnline:ENSMUSG00000034321 Uniprot:Q9DAA6
Length = 195
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 70/162 (43%), Positives = 105/162 (64%)
Query: 4 PPI--CIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61
PP+ CIPG+R+C L+ G GTY R GY++S+LAG + +N V V+ V
Sbjct: 3 PPVRYCIPGERLCNLEEGSPGS-GTYTRHGYIFSSLAGCLM---KTSENGAVPVVSVMRE 58
Query: 62 KKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEM 121
+ ++P G VVT ++ ++ K H++ VG+T L FR +R+E++RATE D++E+
Sbjct: 59 TESQLLPDVGAVVTCKVSSINSRFAKVHILYVGSTPLKNAFRGTIRKEDIRATEKDKVEI 118
Query: 122 YKCYRPGDIILAR-LPLKELHS-YQLSTAENELGVVIALSEA 161
YK +RPGDI+LA+ + L + S Y L+TAENELGVV+A SE+
Sbjct: 119 YKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSES 160
>UNIPROTKB|F1S8Y4 [details] [associations]
symbol:EXOSC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR019495 Pfam:PF10447 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000015287 OMA:AGCLTKS InterPro:IPR025721
Pfam:PF14382 EMBL:CU407093 Ensembl:ENSSSCT00000011508
Uniprot:F1S8Y4
Length = 196
Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 71/163 (43%), Positives = 107/163 (65%)
Query: 4 PPI--CIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61
PP+ CIPG+R+C L+ G GTY R GY++S+LAG ++ + +N + VI V
Sbjct: 3 PPVRYCIPGERLCNLEEGSPGS-GTYTRHGYIFSSLAGCLTKSS---ENGALPVISVMRE 58
Query: 62 KKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRR-ENVRATEIDRIE 120
++P G +VT ++ ++ K H++ VG+T L +FR +RR E+VRATE D++E
Sbjct: 59 TDSQLLPDVGAIVTCKVSSINSRFAKVHILYVGSTPLKNSFRGTIRRKEDVRATEKDKVE 118
Query: 121 MYKCYRPGDIILAR-LPLKELHS-YQLSTAENELGVVIALSEA 161
+YK +RPGDI+LA+ + L + S Y L+TAENELGVV+A SE+
Sbjct: 119 IYKSFRPGDIVLAKVISLGDAQSHYLLTTAENELGVVVAHSES 161
>UNIPROTKB|Q9Y3B2 [details] [associations]
symbol:EXOSC1 "Exosome complex component CSL4" species:9606
"Homo sapiens" [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000178 "exosome (RNase complex)" evidence=IDA;NAS] [GO:0004532
"exoribonuclease activity" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR019495 Pfam:PF10447 PROSITE:PS50126 GO:GO:0005829
GO:GO:0010467 GO:GO:0005730 EMBL:CH471066 GO:GO:0003723
GO:GO:0000178 GO:GO:0006364 eggNOG:COG1096 HOGENOM:HOG000177330
KO:K07573 InterPro:IPR022967 SMART:SM00316 GO:GO:0043928
EMBL:AF151866 EMBL:AK313717 EMBL:AL355490 EMBL:BC022067
IPI:IPI00032823 RefSeq:NP_057130.1 UniGene:Hs.632089 PDB:2NN6
PDBsum:2NN6 ProteinModelPortal:Q9Y3B2 SMR:Q9Y3B2 IntAct:Q9Y3B2
STRING:Q9Y3B2 PhosphoSite:Q9Y3B2 DMDM:14285410 PaxDb:Q9Y3B2
PRIDE:Q9Y3B2 DNASU:51013 Ensembl:ENST00000370902 GeneID:51013
KEGG:hsa:51013 UCSC:uc001kni.3 CTD:51013 GeneCards:GC10M099191
HGNC:HGNC:17286 HPA:HPA038370 MIM:606493 neXtProt:NX_Q9Y3B2
PharmGKB:PA134900737 HOVERGEN:HBG051516 InParanoid:Q9Y3B2
OMA:AGCLTKS OrthoDB:EOG40ZQZP PhylomeDB:Q9Y3B2
EvolutionaryTrace:Q9Y3B2 GenomeRNAi:51013 NextBio:53508
ArrayExpress:Q9Y3B2 Bgee:Q9Y3B2 CleanEx:HS_EXOSC1
Genevestigator:Q9Y3B2 GermOnline:ENSG00000171311 InterPro:IPR025721
Pfam:PF14382 Uniprot:Q9Y3B2
Length = 195
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 68/162 (41%), Positives = 106/162 (65%)
Query: 4 PPI--CIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61
PP+ CIPG+R+C L+ G GTY R GY++S+LAG + + +N + V+ V
Sbjct: 3 PPVRYCIPGERLCNLEEGSPGS-GTYTRHGYIFSSLAGCLMKSS---ENGALPVVSVVRE 58
Query: 62 KKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEM 121
+ ++P G +VT ++ ++ K H++ VG+ L +FR +R+E+VRATE D++E+
Sbjct: 59 TESQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEI 118
Query: 122 YKCYRPGDIILAR-LPLKELHS-YQLSTAENELGVVIALSEA 161
YK +RPGDI+LA+ + L + S Y L+TAENELGVV+A SE+
Sbjct: 119 YKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSES 160
>FB|FBgn0032346 [details] [associations]
symbol:Csl4 "Csl4" species:7227 "Drosophila melanogaster"
[GO:0006397 "mRNA processing" evidence=ISS] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=ISS] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISS;IDA] [GO:0035327
"transcriptionally active chromatin" evidence=IDA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0010468 "regulation of gene expression" evidence=IMP]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0005737 EMBL:AE014134
GO:GO:0003723 GO:GO:0016787 GO:GO:0010468 GO:GO:0035327
GO:GO:0000176 eggNOG:COG1096 KO:K07573 InterPro:IPR022967
SMART:SM00316 GeneTree:ENSGT00390000015287 OMA:AGCLTKS
InterPro:IPR025721 Pfam:PF14382 EMBL:AY095082 RefSeq:NP_609492.1
UniGene:Dm.7278 SMR:Q9VKJ4 IntAct:Q9VKJ4 MINT:MINT-905337
STRING:Q9VKJ4 EnsemblMetazoa:FBtr0080226 GeneID:34548
KEGG:dme:Dmel_CG6249 UCSC:CG6249-RA CTD:34548 FlyBase:FBgn0032346
InParanoid:Q9VKJ4 OrthoDB:EOG4QZ632 GenomeRNAi:34548 NextBio:789009
Uniprot:Q9VKJ4
Length = 204
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 66/153 (43%), Positives = 100/153 (65%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEV 65
+C+PG+R+C+ + IV G GTY + GY+Y++ +G V+I + + V+ V +
Sbjct: 10 VCLPGERLCRTEDSIVLGIGTYEQNGYIYASKSGIVNIE---DSGDKCQVVSVHKPGFHL 66
Query: 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCY 125
+P GDVVTAR++ K + V N L ++R LLR+E+VR TE DR+++YK +
Sbjct: 67 TIPATGDVVTARVLVTTPKFAKCAIFCVRNVLLESSYRGLLRKEDVRETEKDRVDIYKSF 126
Query: 126 RPGDIILARLPLKELH-SYQLSTAENELGVVIA 157
RPGD+ILAR+ + +L S+ L+TAENELGVVIA
Sbjct: 127 RPGDVILARV-INQLEQSFLLTTAENELGVVIA 158
>UNIPROTKB|B1AMU3 [details] [associations]
symbol:EXOSC1 "Exosome complex component CSL4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR019495
Pfam:PF10447 GO:GO:0003723 GO:GO:0000178 HOGENOM:HOG000177330
InterPro:IPR022967 SMART:SM00316 EMBL:AL355490 UniGene:Hs.632089
HGNC:HGNC:17286 HOVERGEN:HBG051516 InterPro:IPR025721 Pfam:PF14382
IPI:IPI00552556 SMR:B1AMU3 Ensembl:ENST00000370885 Uniprot:B1AMU3
Length = 170
Score = 210 (79.0 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 41/86 (47%), Positives = 62/86 (72%)
Query: 78 IMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LP 136
+ ++ K H++ VG+ L +FR +R+E+VRATE D++E+YK +RPGDI+LA+ +
Sbjct: 50 VSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVIS 109
Query: 137 LKELHS-YQLSTAENELGVVIALSEA 161
L + S Y L+TAENELGVV+A SE+
Sbjct: 110 LGDAQSNYLLTTAENELGVVVAHSES 135
Score = 108 (43.1 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 20/38 (52%), Positives = 27/38 (71%)
Query: 4 PPI--CIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAG 39
PP+ CIPG+R+C L+ G GTY R GY++S+LAG
Sbjct: 3 PPVRYCIPGERLCNLEEGSPGS-GTYTRHGYIFSSLAG 39
>UNIPROTKB|B1AMU4 [details] [associations]
symbol:EXOSC1 "Exosome complex component CSL4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR019495 Pfam:PF10447 GO:GO:0005634
GO:GO:0003723 GO:GO:0000178 HOGENOM:HOG000177330 EMBL:AL355490
UniGene:Hs.632089 HGNC:HGNC:17286 HOVERGEN:HBG051516
InterPro:IPR025721 Pfam:PF14382 IPI:IPI00642493 SMR:B1AMU4
Ensembl:ENST00000370886 Uniprot:B1AMU4
Length = 178
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 60/160 (37%), Positives = 94/160 (58%)
Query: 4 PPI--CIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61
PP+ CIPG+R+C L+ G GTY R GY++S+LAG + + +N + V+ V
Sbjct: 3 PPVRYCIPGERLCNLEEGSPGS-GTYTRHGYIFSSLAGCLMKSS---ENGALPVVSVVRE 58
Query: 62 KKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEM 121
+ ++P G +VT ++ ++ K H++ VG+ L +FR +R+E+VRATE D+I +
Sbjct: 59 TESQLLPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKISL 118
Query: 122 YKCYRPGDIILARLPLKELHSYQLSTAENELGVVIALSEA 161
GD A+ +Y L+TAENELGVV+A SE+
Sbjct: 119 ------GD---AQ------SNYLLTTAENELGVVVAHSES 143
>DICTYBASE|DDB_G0285377 [details] [associations]
symbol:DDB_G0285377 "3'-5' exoribonuclease CSL4
homolog" species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000178 "exosome (RNase complex)"
evidence=IEA] InterPro:IPR019495 Pfam:PF10447
dictyBase:DDB_G0285377 EMBL:AAFI02000079 GO:GO:0003723
GO:GO:0000178 eggNOG:COG1096 KO:K07573 InterPro:IPR025721
Pfam:PF14382 RefSeq:XP_638281.1 ProteinModelPortal:Q54N99
STRING:Q54N99 EnsemblProtists:DDB0186485 GeneID:8625089
KEGG:ddi:DDB_G0285377 InParanoid:Q54N99 OMA:NGIIRIQ Uniprot:Q54N99
Length = 156
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 56/152 (36%), Positives = 89/152 (58%)
Query: 2 SNPPICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAG----------TVSINK------ 45
S+ I PGQR+C+ +SD + GTYV +GY+YS++ G T + N
Sbjct: 5 SSNDIITPGQRLCK-ESDFISSEGTYVHKGYIYSSVLGFKHVIKRNIDTTNENNVNNSNN 63
Query: 46 --HVEDNKEVSVIEVSSYKKEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFR 103
+E+NK+ V V K+ +VP G +VT +++ + L ++ VG AL TF
Sbjct: 64 SNEIENNKDYIV--VLKEKEPSVVPEIGSIVTVQVLRINPKLASVAILCVGTKALKETFN 121
Query: 104 ALLRRENVRATEIDRIEMYKCYRPGDIILARL 135
++R ++VRATEID++E+YK +RPGDI+LA++
Sbjct: 122 GIIRIQDVRATEIDKVEIYKSFRPGDIVLAQI 153
>TAIR|locus:2152297 [details] [associations]
symbol:AT5G38890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
InterPro:IPR003029 InterPro:IPR019495 Pfam:PF10447 PROSITE:PS50126
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003723 GO:GO:0000178
Gene3D:2.40.50.140 InterPro:IPR012340 eggNOG:COG1096
HOGENOM:HOG000177330 KO:K07573 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 OMA:RAYYLST EMBL:BT030080
EMBL:AK316921 IPI:IPI00532795 RefSeq:NP_568559.2 UniGene:At.30376
ProteinModelPortal:A2RVT9 SMR:A2RVT9 IntAct:A2RVT9 STRING:A2RVT9
PaxDb:A2RVT9 PRIDE:A2RVT9 DNASU:833880 EnsemblPlants:AT5G38890.1
GeneID:833880 KEGG:ath:AT5G38890 TAIR:At5g38890 InParanoid:A2RVT9
PhylomeDB:A2RVT9 ProtClustDB:CLSN2681079 Genevestigator:A2RVT9
Uniprot:A2RVT9
Length = 191
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 55/155 (35%), Positives = 93/155 (60%)
Query: 9 PGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDN-KEVSVIEVSSYKKEVIV 67
PG I + ++ G+G YV +Y++L GT I + ++ + +++EV+ +K +
Sbjct: 8 PGDVIGKA-TEFKAGKGAYVNDATIYASLTGTCRIVSPLPESIDQRAIVEVTGHKAHGPI 66
Query: 68 PTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRP 127
P G VV AR+ V + ++ VG+ A+ F ++R+++VRATEID+++M++ +
Sbjct: 67 PETGSVVIARVTKVMTKMAAVDILCVGSKAVRENFAGVIRQQDVRATEIDKVDMHQSFHA 126
Query: 128 GDIILAR-LPLKELHSYQLSTAENELGVVIALSEA 161
GDI+ A L L + +Y LSTA+NELGVV A S A
Sbjct: 127 GDIVRAMVLSLGDARAYYLSTAKNELGVVSAESAA 161
>UNIPROTKB|G4ML19 [details] [associations]
symbol:MGG_08628 "3'-5' exoribonuclease CSL4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0009405 "pathogenesis"
evidence=IMP] InterPro:IPR019495 Pfam:PF10447 GO:GO:0009405
GO:GO:0003723 GO:GO:0000178 Gene3D:2.40.50.140 InterPro:IPR012340
EMBL:CM001231 KO:K07573 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 RefSeq:XP_003711058.1
ProteinModelPortal:G4ML19 EnsemblFungi:MGG_08628T0 GeneID:2678864
KEGG:mgr:MGG_08628 Uniprot:G4ML19
Length = 213
Score = 176 (67.0 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 41/112 (36%), Positives = 68/112 (60%)
Query: 67 VPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYR 126
+P GDVV R+ V ++ VG+ L ++ ++R +VRATE DR+++ + +R
Sbjct: 90 LPEVGDVVLCRVTRVSHQQAIVAILVVGDAVLDAEWQGVIRVRDVRATEKDRVKIGESFR 149
Query: 127 PGDIILAR-LPLKELHSYQLSTAENELGVVIALSEAAS-LFRSSEKLTNDIE 176
PGDI+ A+ + L + +Y L+TA NELGV++A S+A + ++ S K D E
Sbjct: 150 PGDIVRAQVISLGDQANYYLTTASNELGVIMANSDAGNPMYPVSWKEYKDPE 201
Score = 71 (30.1 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 4 PPICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINK 45
P + +PGQ + S G GT++ + LYS+L G VSI +
Sbjct: 7 PSLALPGQLLGP-SSRYRAGPGTHIHEANLYSSLLGAVSITQ 47
>UNIPROTKB|F1P3Y1 [details] [associations]
symbol:EXOSC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR019495 Pfam:PF10447 GO:GO:0005730
GO:GO:0003723 GO:GO:0000178 GeneTree:ENSGT00390000015287
EMBL:AADN02046446 IPI:IPI00683120 Ensembl:ENSGALT00000033237
OMA:THTKDFR Uniprot:F1P3Y1
Length = 130
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 44/89 (49%), Positives = 65/89 (73%)
Query: 75 TARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR 134
+ ++ ++ K +++ VG+T L TFR +RRE++RATE D++E+YK +RPGDI+LA+
Sbjct: 7 SVQVCSINSRFAKVNILYVGSTPLKSTFRGTIRREDIRATEKDKVEVYKSFRPGDIVLAK 66
Query: 135 -LPLKELHS-YQLSTAENELGVVIALSEA 161
+ L + S Y LSTAENELGVV+A SEA
Sbjct: 67 VISLGDAQSNYLLSTAENELGVVVARSEA 95
>GENEDB_PFALCIPARUM|MAL7P1.104 [details] [associations]
symbol:MAL7P1.104 "3'-5' exoribonuclease Csl4
homolog, putative" species:5833 "Plasmodium falciparum" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0008312 "7S RNA binding"
evidence=ISS] [GO:0000178 "exosome (RNase complex)" evidence=ISS]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0000178 GO:GO:0006364
GO:GO:0000175 EMBL:AL844506 HOGENOM:HOG000177330 KO:K07573
InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721 Pfam:PF14382
GO:GO:0008312 OMA:NGIIRIQ RefSeq:XP_001349101.1
ProteinModelPortal:Q8IBQ2 EnsemblProtists:MAL7P1.104:mRNA
GeneID:2654956 KEGG:pfa:MAL7P1.104 EuPathDB:PlasmoDB:PF3D7_0720000
ProtClustDB:CLSZ2432407 Uniprot:Q8IBQ2
Length = 195
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 44/163 (26%), Positives = 87/163 (53%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKK-E 64
I IPG+ + L ++ + G TY+ + + S++ G INK+ N + ++I V + K
Sbjct: 9 IVIPGEFL-GLQAEYINGNNTYLLKDEIRSSILGQKIINKN---NDKKTIISVYNLKPPS 64
Query: 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKC 124
+ +P GD+V ++ V H+ +++S N + + + ++ E + + + C
Sbjct: 65 LYLPKIGDIVICKVQRVSFHMIYCYILSSHNIFTKNALKGFILKSDIHINEGELGDNFIC 124
Query: 125 YRPGDIILAR-LPLKELHSYQLSTAENELGVVIALSEAASLFR 166
++ GDII A+ L + + SY+LST +ELGV+ A ++ + R
Sbjct: 125 FKQGDIIKAKVLSIGQYSSYKLSTVGSELGVIAAFNQKGEILR 167
>UNIPROTKB|Q8IBQ2 [details] [associations]
symbol:MAL7P1.104 "3'-5' exoribonuclease Csl4 homolog,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISS] [GO:0000178 "exosome
(RNase complex)" evidence=ISS] [GO:0006364 "rRNA processing"
evidence=ISS] [GO:0008312 "7S RNA binding" evidence=ISS]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0000178 GO:GO:0006364
GO:GO:0000175 EMBL:AL844506 HOGENOM:HOG000177330 KO:K07573
InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721 Pfam:PF14382
GO:GO:0008312 OMA:NGIIRIQ RefSeq:XP_001349101.1
ProteinModelPortal:Q8IBQ2 EnsemblProtists:MAL7P1.104:mRNA
GeneID:2654956 KEGG:pfa:MAL7P1.104 EuPathDB:PlasmoDB:PF3D7_0720000
ProtClustDB:CLSZ2432407 Uniprot:Q8IBQ2
Length = 195
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 44/163 (26%), Positives = 87/163 (53%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKK-E 64
I IPG+ + L ++ + G TY+ + + S++ G INK+ N + ++I V + K
Sbjct: 9 IVIPGEFL-GLQAEYINGNNTYLLKDEIRSSILGQKIINKN---NDKKTIISVYNLKPPS 64
Query: 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKC 124
+ +P GD+V ++ V H+ +++S N + + + ++ E + + + C
Sbjct: 65 LYLPKIGDIVICKVQRVSFHMIYCYILSSHNIFTKNALKGFILKSDIHINEGELGDNFIC 124
Query: 125 YRPGDIILAR-LPLKELHSYQLSTAENELGVVIALSEAASLFR 166
++ GDII A+ L + + SY+LST +ELGV+ A ++ + R
Sbjct: 125 FKQGDIIKAKVLSIGQYSSYKLSTVGSELGVIAAFNQKGEILR 167
>WB|WBGene00012966 [details] [associations]
symbol:exos-1 species:6239 "Caenorhabditis elegans"
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0005634 GO:GO:0009792
GO:GO:0005737 GO:GO:0040010 GO:GO:0040018 GO:GO:0000003
GO:GO:0003723 GO:GO:0000178 KO:K07573 GeneTree:ENSGT00390000015287
InterPro:IPR025721 Pfam:PF14382 EMBL:AL023844 PIR:T26982
RefSeq:NP_499416.1 ProteinModelPortal:Q9XXD2 SMR:Q9XXD2
STRING:Q9XXD2 PaxDb:Q9XXD2 EnsemblMetazoa:Y48A6B.5.1
EnsemblMetazoa:Y48A6B.5.2 GeneID:176532 KEGG:cel:CELE_Y48A6B.5
UCSC:Y48A6B.5 CTD:176532 WormBase:Y48A6B.5 eggNOG:NOG267705
HOGENOM:HOG000021244 InParanoid:Q9XXD2 OMA:RAYYLST NextBio:892972
Uniprot:Q9XXD2
Length = 208
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 50/156 (32%), Positives = 86/156 (55%)
Query: 9 PGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSIN--KHVEDNKEVSVIEVSSYKKEV- 65
PG ++ + G+G Y +++++AG V++ + DN V VIEV + ++
Sbjct: 9 PGDKVLDAIGEYRMGKGLYEANRRIFASVAGFVNVYGFRDKSDNL-VQVIEVRRSEDQLD 67
Query: 66 --IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYK 123
++P G +VTA++MAV K +IS+G+ + F ALL ++ +R E + E +K
Sbjct: 68 NELLPFHGAIVTAKVMAVGLRFAKCDIISIGDKVYKKRFSALLPKKKLRPLEPELSEPFK 127
Query: 124 CY-RPGDIILARL--PLKELHSYQLSTAENELGVVI 156
+ RP D ILA++ + + LS AE+ELGVV+
Sbjct: 128 NFVRPNDYILAKVCEDAEIKDKFVLSIAEDELGVVL 163
>ASPGD|ASPL0000007077 [details] [associations]
symbol:AN11250 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=IEA] [GO:0000176 "nuclear exosome
(RNase complex)" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IEA] [GO:0070481 "nuclear-transcribed
mRNA catabolic process, non-stop decay" evidence=IEA] [GO:0034427
"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'"
evidence=IEA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0071038 "nuclear
polyadenylation-dependent tRNA catabolic process" evidence=IEA]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0003723 EMBL:BN001301
GO:GO:0000178 HOGENOM:HOG000177330 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 EnsemblFungi:CADANIAT00007710
OMA:GPGTHIH Uniprot:C8V2Y5
Length = 246
Score = 133 (51.9 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 102 FRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELHSYQLSTAENELGVVIALSE 160
F+AL+R+E+VRA E DR+ + + +R GDI+ + L + Y ++TA N+LGVV+A SE
Sbjct: 157 FQALIRKEDVRAVEKDRVVLDEMFRVGDIVRGTVISLGDQSYYYITTARNDLGVVMARSE 216
Query: 161 AASL-FRSSEKLTND 174
A ++ F S K D
Sbjct: 217 AGNMMFPVSWKEMRD 231
Score = 93 (37.8 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 4 PPICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVS-SYK 62
P + IPGQR+ + G GT+V ++Y+++AG VS++ ++ S+I VS + K
Sbjct: 6 PSLAIPGQRLGPAGT-YSAGPGTHVYHSHIYASIAGPVSVDSAQVNSPAKSIISVSRTMK 64
Query: 63 KEVIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENV 111
K + + T + + + A V + L+R R R+ V
Sbjct: 65 KAIAAASTSTSSTTTVPKPKYNTLPA----VDSVVLARVTRVQKRQATV 109
>POMBASE|SPCC1840.11 [details] [associations]
symbol:csl4 "exosome subunit Csl4 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0034661 "ncRNA catabolic process"
evidence=ISO] [GO:0070478 "nuclear-transcribed mRNA catabolic
process, 3'-5' exonucleolytic nonsense-mediated decay"
evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=ISO] [GO:0070651 "nonfunctional
rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR003029 InterPro:IPR019495 Pfam:PF10447 PROSITE:PS50126
PomBase:SPCC1840.11 GO:GO:0005829 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003723 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0071035 GO:GO:0071038
GO:GO:0000176 GO:GO:0000175 PIR:T41179 PIR:T41654
RefSeq:NP_588510.1 ProteinModelPortal:O59821 STRING:O59821
EnsemblFungi:SPCC1840.11.1 GeneID:2539351 KEGG:spo:SPCC1840.11
eggNOG:COG1096 HOGENOM:HOG000177330 KO:K07573 OMA:KIGDCFR
OrthoDB:EOG4CZFRH NextBio:20800516 GO:GO:0000177 GO:GO:0000467
GO:GO:0070651 GO:GO:0071042 GO:GO:0070478 GO:GO:0070481
InterPro:IPR022967 SMART:SM00316 Uniprot:O59821
Length = 181
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 43/155 (27%), Positives = 79/155 (50%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEV 65
+ +PGQ + + G GT R Y+ ST G + D ++ SV ++
Sbjct: 3 LVLPGQVVAR---GAPNGEGTVKRGDYIISTRTG-------IFDPEKNSVTYPRKVEETA 52
Query: 66 IVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCY 125
++P G +V AR+ + ++ V + F+ ++ +++RATE +++++ +
Sbjct: 53 VLPNVGSIVLARVSRINARQATVNISVVDDVCTKDEFQGVIHVQDIRATEKNKVKVQNSF 112
Query: 126 RPGDIILAR-LPLKELHSYQLSTAENELGVVIALS 159
RPGDI+ A + L + SY L+TA N+LGV+ A S
Sbjct: 113 RPGDIVRALVISLGDGSSYFLTTARNDLGVIFAQS 147
>SGD|S000005176 [details] [associations]
symbol:CSL4 "Exosome non-catalytic core component"
species:4932 "Saccharomyces cerevisiae" [GO:0070478
"nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic
nonsense-mediated decay" evidence=IC] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000467 "exonucleolytic trimming to generate
mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0000177
"cytoplasmic exosome (RNase complex)" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0000176 "nuclear
exosome (RNase complex)" evidence=IDA] [GO:0000178 "exosome (RNase
complex)" evidence=IEA] [GO:0070651 "nonfunctional rRNA decay"
evidence=IC] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IDA] [GO:0043628 "ncRNA 3'-end
processing" evidence=IC] [GO:0071051 "polyadenylation-dependent
snoRNA 3'-end processing" evidence=IC] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=IC]
[GO:0003674 "molecular_function" evidence=ND] [GO:0034427
"nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'"
evidence=IGI;IMP] [GO:0070481 "nuclear-transcribed mRNA catabolic
process, non-stop decay" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0071035 "nuclear polyadenylation-dependent rRNA
catabolic process" evidence=IMP] InterPro:IPR019495 Pfam:PF10447
SGD:S000005176 GO:GO:0005730 EMBL:BK006947 GO:GO:0003723
GO:GO:0071035 GO:GO:0071038 EMBL:Z69381 GO:GO:0000176
eggNOG:COG1096 HOGENOM:HOG000177330 KO:K07573 OrthoDB:EOG4CZFRH
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 EMBL:Z71508 PIR:S63198
RefSeq:NP_014167.1 ProteinModelPortal:P53859 SMR:P53859
DIP:DIP-6785N IntAct:P53859 MINT:MINT-614245 STRING:P53859
PaxDb:P53859 PeptideAtlas:P53859 PRIDE:P53859 EnsemblFungi:YNL232W
GeneID:855489 KEGG:sce:YNL232W CYGD:YNL232w
GeneTree:ENSGT00390000015287 OMA:QRANVEI NextBio:979469
Genevestigator:P53859 GermOnline:YNL232W GO:GO:0071051
Uniprot:P53859
Length = 292
Score = 152 (58.6 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 29/68 (42%), Positives = 50/68 (73%)
Query: 91 ISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELHSYQLSTAE 149
+S ++ L TFR ++R ++VR+T+ DR+++ +C++PGDI+ A+ L L + +Y L+TA
Sbjct: 190 VSQASSDLGETFRGIIRSQDVRSTDRDRVKVIECFKPGDIVRAQVLSLGDGTNYYLTTAR 249
Query: 150 NELGVVIA 157
N+LGVV A
Sbjct: 250 NDLGVVFA 257
Score = 37 (18.1 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 67 VPTPGDVVTARIMAVQQHLCKAHVISV 93
+P GD+V R+ + +++V
Sbjct: 132 LPKEGDIVLTRVTRLSLQRANVEILAV 158
>UNIPROTKB|B1AMU7 [details] [associations]
symbol:EXOSC1 "Exosome complex component CSL4" species:9606
"Homo sapiens" [GO:0000178 "exosome (RNase complex)" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR019495
Pfam:PF10447 GO:GO:0003723 GO:GO:0000178 HOGENOM:HOG000177330
EMBL:AL355490 UniGene:Hs.632089 HGNC:HGNC:17286 HOVERGEN:HBG051516
InterPro:IPR025721 Pfam:PF14382 IPI:IPI00552886 SMR:B1AMU7
Ensembl:ENST00000370884 Uniprot:B1AMU7
Length = 154
Score = 132 (51.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 32/98 (32%), Positives = 54/98 (55%)
Query: 4 PPI--CIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSY 61
PP+ CIPG+R+C L+ G GTY R GY++S+LAG + + +N + V+ V
Sbjct: 3 PPVRYCIPGERLCNLEEGSPGS-GTYTRHGYIFSSLAGCLMKSS---ENGALPVVSVVRE 58
Query: 62 KKEVIVPTPGDVVTARIMAVQQH----LCKAHVISVGN 95
+ ++P G +VT ++ + + A VIS+G+
Sbjct: 59 TESQLLPDVGAIVTCKVEIYKSFRPGDIVLAKVISLGD 96
Score = 123 (48.4 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 26/46 (56%), Positives = 37/46 (80%)
Query: 118 RIEMYKCYRPGDIILAR-LPLKELHS-YQLSTAENELGVVIALSEA 161
++E+YK +RPGDI+LA+ + L + S Y L+TAENELGVV+A SE+
Sbjct: 74 KVEIYKSFRPGDIVLAKVISLGDAQSNYLLTTAENELGVVVAHSES 119
>CGD|CAL0001085 [details] [associations]
symbol:orf19.1026 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0000177 "cytoplasmic exosome
(RNase complex)" evidence=IEA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IEA] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=IEA]
[GO:0070481 "nuclear-transcribed mRNA catabolic process, non-stop
decay" evidence=IEA] [GO:0034427 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 3'-5'" evidence=IEA] [GO:0000467
"exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0071038 "nuclear polyadenylation-dependent tRNA
catabolic process" evidence=IEA] InterPro:IPR019495 Pfam:PF10447
CGD:CAL0001085 GO:GO:0003723 EMBL:AACQ01000121 GO:GO:0000178
eggNOG:COG1096 RefSeq:XP_713631.1 ProteinModelPortal:Q59VR7
STRING:Q59VR7 GeneID:3644678 KEGG:cal:CaO19.1026 Uniprot:Q59VR7
Length = 330
Score = 140 (54.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/64 (42%), Positives = 45/64 (70%)
Query: 98 LSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELHSYQLSTAENELGVVI 156
L F+ ++R ++R TE D++++ C++PGDI+ A+ + L + +Y L+TA+NELGVV
Sbjct: 233 LGENFKGIIRINDIRLTERDKLKLIDCFKPGDIVKAQVISLGDGSNYYLTTAKNELGVVF 292
Query: 157 ALSE 160
A SE
Sbjct: 293 AKSE 296
Score = 45 (20.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 20/84 (23%), Positives = 33/84 (39%)
Query: 15 QLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYK--KEVIVPTPGD 72
Q SD + YV+ YL S + + KH + + S K + +P D
Sbjct: 104 QTKSDEDKDKDKYVKS-YLVSVIPKST---KH-QSTTSTTTSNQSGSKAISAIALPKEND 158
Query: 73 VVTARIMAVQQHLCKAHVISVGNT 96
+V RI + + +IS+ T
Sbjct: 159 IVLVRITKITKIQAYCEIISLDTT 182
>UNIPROTKB|Q59VR7 [details] [associations]
symbol:CSL4 "Likely exosome component Csl4p" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR019495 Pfam:PF10447 CGD:CAL0001085
GO:GO:0003723 EMBL:AACQ01000121 GO:GO:0000178 eggNOG:COG1096
RefSeq:XP_713631.1 ProteinModelPortal:Q59VR7 STRING:Q59VR7
GeneID:3644678 KEGG:cal:CaO19.1026 Uniprot:Q59VR7
Length = 330
Score = 140 (54.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/64 (42%), Positives = 45/64 (70%)
Query: 98 LSRTFRALLRRENVRATEIDRIEMYKCYRPGDIILAR-LPLKELHSYQLSTAENELGVVI 156
L F+ ++R ++R TE D++++ C++PGDI+ A+ + L + +Y L+TA+NELGVV
Sbjct: 233 LGENFKGIIRINDIRLTERDKLKLIDCFKPGDIVKAQVISLGDGSNYYLTTAKNELGVVF 292
Query: 157 ALSE 160
A SE
Sbjct: 293 AKSE 296
Score = 45 (20.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 20/84 (23%), Positives = 33/84 (39%)
Query: 15 QLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYK--KEVIVPTPGD 72
Q SD + YV+ YL S + + KH + + S K + +P D
Sbjct: 104 QTKSDEDKDKDKYVKS-YLVSVIPKST---KH-QSTTSTTTSNQSGSKAISAIALPKEND 158
Query: 73 VVTARIMAVQQHLCKAHVISVGNT 96
+V RI + + +IS+ T
Sbjct: 159 IVLVRITKITKIQAYCEIISLDTT 182
>WB|WBGene00022232 [details] [associations]
symbol:exos-2 species:6239 "Caenorhabditis elegans"
[GO:0000178 "exosome (RNase complex)" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR026699
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0000178
EMBL:FO081731 InterPro:IPR022967 SMART:SM00316 InterPro:IPR025721
Pfam:PF14382 GeneTree:ENSGT00440000033656 KO:K03679
PANTHER:PTHR21321 eggNOG:COG1097 HOGENOM:HOG000193685
RefSeq:NP_500978.1 ProteinModelPortal:Q95XD0 SMR:Q95XD0
STRING:Q95XD0 PaxDb:Q95XD0 EnsemblMetazoa:Y73B6BL.3 GeneID:177403
KEGG:cel:CELE_Y73B6BL.3 UCSC:Y73B6BL.3 CTD:177403
WormBase:Y73B6BL.3 InParanoid:Q95XD0 OMA:VARVANC NextBio:896664
Uniprot:Q95XD0
Length = 303
Score = 121 (47.7 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 50/171 (29%), Positives = 79/171 (46%)
Query: 6 ICIPGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVS-INKHVEDNKEVSVIEVSSYKKE 64
I IPG +C + G GTYVR G + S+L+G V +N+ + V I+ Y E
Sbjct: 31 IVIPGHSVCDAPQQFMRGHGTYVRDGEIVSSLSGVVQQLNRLLM----VKTIK-QRYAGE 85
Query: 65 VIVPTPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEI-DRIEMYK 123
V GDVV AR++ VQ K V S + L LL + R ++ D +M +
Sbjct: 86 V-----GDVVVARVVEVQAKRWKCDVASRLHANLPLG-SVLLPGGDFRRKDVEDEEKMSE 139
Query: 124 CYRPGDIILARLP-LKELHSYQLSTAENELGVV---IALSEAASLFRSSEK 170
+ G++I A + ++ + L T N+ G + I + L + S+K
Sbjct: 140 FLKNGELICAEVQQVQHDGTLMLHTRNNKYGKLQQGILIKVPPHLIKKSKK 190
>POMBASE|SPAC2F7.14c [details] [associations]
symbol:SPAC2F7.14c "exosome subunit Rrp4 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000176 "nuclear
exosome (RNase complex)" evidence=ISO] [GO:0000177 "cytoplasmic
exosome (RNase complex)" evidence=ISO] [GO:0000467 "exonucleolytic
trimming to generate mature 3'-end of 5.8S rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0034661
"ncRNA catabolic process" evidence=ISO] [GO:0044732 "mitotic
spindle pole body" evidence=IDA] [GO:0070478 "nuclear-transcribed
mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated
decay" evidence=ISO] [GO:0070481 "nuclear-transcribed mRNA
catabolic process, non-stop decay" evidence=ISO] [GO:0070651
"nonfunctional rRNA decay" evidence=ISO] [GO:0071035 "nuclear
polyadenylation-dependent rRNA catabolic process" evidence=ISO]
[GO:0071038 "nuclear polyadenylation-dependent tRNA catabolic
process" evidence=ISO] [GO:0071042 "nuclear
polyadenylation-dependent mRNA catabolic process" evidence=ISO]
InterPro:IPR026699 PROSITE:PS50126 PomBase:SPAC2F7.14c
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0044732
GO:GO:0003723 GO:GO:0071035 GO:GO:0071038 GO:GO:0000176
GO:GO:0000177 GO:GO:0000467 GO:GO:0070651 GO:GO:0071042
GO:GO:0070478 GO:GO:0070481 InterPro:IPR022967 SMART:SM00316
InterPro:IPR025721 Pfam:PF14382 KO:K03679 PANTHER:PTHR21321
eggNOG:COG1097 HOGENOM:HOG000193685 PIR:T38562 RefSeq:NP_592984.1
ProteinModelPortal:Q09704 STRING:Q09704 EnsemblFungi:SPAC2F7.14c.1
GeneID:2541813 KEGG:spo:SPAC2F7.14c OMA:GNKRWKV OrthoDB:EOG4G1QRD
NextBio:20802901 Uniprot:Q09704
Length = 329
Score = 112 (44.5 bits), Expect = 0.00054, P = 0.00054
Identities = 37/127 (29%), Positives = 61/127 (48%)
Query: 9 PGQRICQLDSDIVGGRGTYVRQGYLYSTLAGTVSINKHVEDNKEVSVIEVSSYKKEVIVP 68
PGQ + D + G GTY G +Y+++AG+V + V NK +SV + S VP
Sbjct: 60 PGQLVTD-DPQFMRGHGTYFEDGGIYASVAGSV---QRV--NKLISVKPLRSK----YVP 109
Query: 69 TPGDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPG 128
GD++ +I VQ K + + N L + L R E D ++M ++ G
Sbjct: 110 EIGDLIIGKIAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEG 169
Query: 129 DIILARL 135
D+++A +
Sbjct: 170 DLLVAEV 176
>UNIPROTKB|F1LYS6 [details] [associations]
symbol:F1LYS6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000178 "exosome (RNase complex)"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR019495 Pfam:PF10447 GO:GO:0005730 GO:GO:0003723
GO:GO:0000178 IPI:IPI00782468 Ensembl:ENSRNOT00000061653
Uniprot:F1LYS6
Length = 75
Score = 91 (37.1 bits), Expect = 0.00065, P = 0.00065
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 71 GDVVTARIMAVQQHLCKAHVISVGNTALSRTFRALLRRENVRATEIDRIEMYKCYRPGDI 130
G VVT I ++ + H++ +T L TF+ ++N+ AT D++++ K + P +I
Sbjct: 11 GAVVTFEISSINSCFDQVHILKARSTRLKNTFQQTTCKKNIAATVKDKVDICKSFCPENI 70
Query: 131 ILARL 135
I +L
Sbjct: 71 IWPKL 75
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.131 0.354 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 271 253 0.00083 114 3 11 23 0.50 33
32 0.47 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 571 (61 KB)
Total size of DFA: 153 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 26.36u 0.06s 26.42t Elapsed: 00:00:11
Total cpu time: 26.36u 0.06s 26.42t Elapsed: 00:00:12
Start: Thu Aug 15 13:03:29 2013 End: Thu Aug 15 13:03:41 2013