Query psy6282
Match_columns 251
No_of_seqs 193 out of 1665
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 22:27:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayj_A 50S ribosomal protein L 84.9 0.6 2.1E-05 29.2 2.4 31 48-78 15-45 (56)
2 3j21_g 50S ribosomal protein L 81.1 0.86 2.9E-05 28.1 2.0 28 51-78 13-40 (51)
3 2yw8_A RUN and FYVE domain-con 76.9 1.1 3.8E-05 30.3 1.8 26 51-76 18-45 (82)
4 1x4u_A Zinc finger, FYVE domai 70.0 2.3 7.9E-05 28.8 2.1 25 52-76 14-40 (84)
5 3t7l_A Zinc finger FYVE domain 69.9 2.9 0.0001 28.7 2.6 25 52-76 20-46 (90)
6 1z2q_A LM5-1; membrane protein 68.4 2.5 8.6E-05 28.6 2.0 25 52-76 21-47 (84)
7 1joc_A EEA1, early endosomal a 65.8 2.4 8.2E-05 31.1 1.5 26 51-76 68-95 (125)
8 1wfk_A Zinc finger, FYVE domai 61.1 3.6 0.00012 28.2 1.7 26 51-76 8-35 (88)
9 1vfy_A Phosphatidylinositol-3- 60.0 3.1 0.00011 27.3 1.1 23 54-76 13-37 (73)
10 1dvp_A HRS, hepatocyte growth 56.5 3.9 0.00013 32.9 1.4 24 53-76 162-187 (220)
11 2dkt_A Ring finger and CHY zin 55.2 3.8 0.00013 30.8 1.0 46 46-91 77-126 (143)
12 1y02_A CARP2, FYVE-ring finger 52.6 3.8 0.00013 29.9 0.6 24 53-76 20-45 (120)
13 3zyq_A Hepatocyte growth facto 48.9 5.6 0.00019 32.2 1.1 24 53-76 165-190 (226)
14 2cr8_A MDM4 protein; ZF-ranbp 48.5 7.7 0.00026 23.6 1.4 22 53-74 12-33 (53)
15 2c6a_A Ubiquitin-protein ligas 47.8 8.5 0.00029 22.9 1.5 21 53-73 14-34 (46)
16 3u5e_m 60S ribosomal protein L 40.9 11 0.00037 27.4 1.5 25 51-75 92-118 (128)
17 1twf_L ABC10-alpha, DNA-direct 39.7 17 0.00057 23.7 2.1 27 52-78 28-57 (70)
18 2vrw_B P95VAV, VAV1, proto-onc 38.3 9.8 0.00033 33.3 1.1 30 49-78 354-386 (406)
19 2dkt_A Ring finger and CHY zin 37.4 5.7 0.0002 29.9 -0.5 32 53-84 102-136 (143)
20 2apo_B Ribosome biogenesis pro 37.2 17 0.00057 23.0 1.7 22 51-74 5-26 (60)
21 3gox_A Restriction endonucleas 35.9 13 0.00045 29.3 1.3 26 39-64 62-87 (200)
22 1tac_A TAT protein; transcript 32.2 16 0.00056 24.6 1.1 13 53-72 25-37 (86)
23 3qt1_I DNA-directed RNA polyme 31.7 27 0.00092 25.7 2.4 25 50-74 22-54 (133)
24 2pg3_A Queuosine biosynthesis 31.4 9.8 0.00033 30.4 -0.1 18 62-79 191-208 (232)
25 1wil_A KIAA1045 protein; ring 28.4 61 0.0021 21.9 3.4 26 52-77 15-40 (89)
26 1wa7_B TIP, hypothetical 28.7 28.2 39 0.0013 17.1 1.9 15 3-17 2-16 (26)
27 2aus_D NOP10, ribosome biogene 27.4 28 0.00095 22.0 1.5 22 51-74 4-25 (60)
28 3mpx_A FYVE, rhogef and PH dom 27.0 13 0.00045 32.6 0.0 23 52-74 375-399 (434)
29 2hqh_E Restin; beta/BETA struc 25.2 15 0.0005 19.0 -0.0 10 52-61 3-12 (26)
30 3lpe_B DNA-directed RNA polyme 25.1 28 0.00094 21.9 1.2 21 53-75 2-22 (59)
31 2xoc_A E3 ubiquitin-protein li 24.1 36 0.0012 28.1 2.0 35 40-74 67-112 (261)
32 2zjr_Z 50S ribosomal protein L 24.0 30 0.001 21.7 1.3 21 51-73 29-50 (60)
33 1h7d_A Aminolevulinic acid syn 23.4 28 0.00094 21.0 0.9 13 78-90 6-18 (49)
34 1ard_A Yeast transcription fac 21.9 35 0.0012 16.1 1.1 12 66-77 2-13 (29)
35 2xzm_5 Ribosomal protein S26E 21.5 23 0.00078 25.5 0.4 17 67-83 21-37 (119)
36 3mi9_C Protein TAT; P-TEFB, HI 21.4 16 0.00056 24.6 -0.4 6 53-58 25-30 (86)
37 3gj3_B Nuclear pore complex pr 21.1 50 0.0017 18.0 1.6 20 54-73 9-28 (33)
38 2kvh_A Zinc finger and BTB dom 20.8 31 0.0011 16.2 0.7 13 65-77 2-14 (27)
39 3u5c_a 40S ribosomal protein S 20.7 23 0.0008 25.5 0.2 15 67-81 21-35 (119)
40 3bl5_A Queuosine biosynthesis 20.4 22 0.00074 27.8 0.0 17 62-78 188-204 (219)
41 2jrp_A Putative cytoplasmic pr 20.2 20 0.00068 24.1 -0.2 25 52-77 18-42 (81)
No 1
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=84.94 E-value=0.6 Score=29.19 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=25.7
Q ss_pred CCCCcccCcccccccCCCCCCCCccCccccC
Q psy6282 48 IDGGTRFCDKCYQVKADRSHHCSVCGKCVLK 78 (251)
Q Consensus 48 ~~~~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 78 (251)
.+.....|..|...-|+|+..|+.||..-+|
T Consensus 15 ~~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 15 RVFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CSCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HHhchhhhccccCcCCcccccccCCCCCCCC
Confidence 3445789999999999999999999866554
No 2
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=81.07 E-value=0.86 Score=28.06 Aligned_cols=28 Identities=21% Similarity=0.471 Sum_probs=24.4
Q ss_pred CcccCcccccccCCCCCCCCccCccccC
Q psy6282 51 GTRFCDKCYQVKADRSHHCSVCGKCVLK 78 (251)
Q Consensus 51 ~~~~C~~C~~~kP~Rs~HC~~C~~CV~~ 78 (251)
..+.|..|...-|+++..|+.||.--+|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred CCccCCCCCCcCCCCceecCCCCCcccc
Confidence 3689999999999999999999976554
No 3
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=76.86 E-value=1.1 Score=30.32 Aligned_cols=26 Identities=31% Similarity=0.818 Sum_probs=18.9
Q ss_pred CcccCccccc--ccCCCCCCCCccCccc
Q psy6282 51 GTRFCDKCYQ--VKADRSHHCSVCGKCV 76 (251)
Q Consensus 51 ~~~~C~~C~~--~kP~Rs~HC~~C~~CV 76 (251)
....|..|+. ---.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 3467888874 3446889999998744
No 4
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.97 E-value=2.3 Score=28.82 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=18.4
Q ss_pred cccCccccc--ccCCCCCCCCccCccc
Q psy6282 52 TRFCDKCYQ--VKADRSHHCSVCGKCV 76 (251)
Q Consensus 52 ~~~C~~C~~--~kP~Rs~HC~~C~~CV 76 (251)
...|..|+. ---.|-|||+.||+-+
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~vf 40 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNSF 40 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCEE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcEE
Confidence 467888874 3457889999998643
No 5
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=69.88 E-value=2.9 Score=28.72 Aligned_cols=25 Identities=36% Similarity=0.817 Sum_probs=17.5
Q ss_pred cccCccccc--ccCCCCCCCCccCccc
Q psy6282 52 TRFCDKCYQ--VKADRSHHCSVCGKCV 76 (251)
Q Consensus 52 ~~~C~~C~~--~kP~Rs~HC~~C~~CV 76 (251)
...|..|.. ---.|-|||+.||+-+
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE
Confidence 356888874 2345889999998644
No 6
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=68.36 E-value=2.5 Score=28.64 Aligned_cols=25 Identities=32% Similarity=0.751 Sum_probs=18.3
Q ss_pred cccCccccc--ccCCCCCCCCccCccc
Q psy6282 52 TRFCDKCYQ--VKADRSHHCSVCGKCV 76 (251)
Q Consensus 52 ~~~C~~C~~--~kP~Rs~HC~~C~~CV 76 (251)
...|..|+. ---.|-|||+.||+-+
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccchhcccccCCCcEE
Confidence 467888874 2346889999998744
No 7
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=65.79 E-value=2.4 Score=31.15 Aligned_cols=26 Identities=31% Similarity=0.662 Sum_probs=19.0
Q ss_pred CcccCcccccc--cCCCCCCCCccCccc
Q psy6282 51 GTRFCDKCYQV--KADRSHHCSVCGKCV 76 (251)
Q Consensus 51 ~~~~C~~C~~~--kP~Rs~HC~~C~~CV 76 (251)
....|..|... --.|-|||+.||+-+
T Consensus 68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 68 EVQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccccccccCCCCCeEE
Confidence 35678888753 457889999998643
No 8
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=61.11 E-value=3.6 Score=28.18 Aligned_cols=26 Identities=19% Similarity=0.445 Sum_probs=18.6
Q ss_pred CcccCccccc--ccCCCCCCCCccCccc
Q psy6282 51 GTRFCDKCYQ--VKADRSHHCSVCGKCV 76 (251)
Q Consensus 51 ~~~~C~~C~~--~kP~Rs~HC~~C~~CV 76 (251)
....|..|+. ---.|-|||+.||+-+
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vf 35 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEE
Confidence 3467888874 2457889999998643
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=60.05 E-value=3.1 Score=27.33 Aligned_cols=23 Identities=35% Similarity=0.820 Sum_probs=16.6
Q ss_pred cCcccccc--cCCCCCCCCccCccc
Q psy6282 54 FCDKCYQV--KADRSHHCSVCGKCV 76 (251)
Q Consensus 54 ~C~~C~~~--kP~Rs~HC~~C~~CV 76 (251)
-|..|+.. .-.|-|||+.||+-+
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cccCCCCccCCccccccCCCCCEEE
Confidence 58888742 346889999998744
No 10
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=56.51 E-value=3.9 Score=32.92 Aligned_cols=24 Identities=38% Similarity=1.009 Sum_probs=16.6
Q ss_pred ccCccccc--ccCCCCCCCCccCccc
Q psy6282 53 RFCDKCYQ--VKADRSHHCSVCGKCV 76 (251)
Q Consensus 53 ~~C~~C~~--~kP~Rs~HC~~C~~CV 76 (251)
..|..|+. ---.|-|||+.||+-+
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CccCCCCCccCCcccccccCCcCCEE
Confidence 57888863 2345888999888644
No 11
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=55.21 E-value=3.8 Score=30.84 Aligned_cols=46 Identities=33% Similarity=0.644 Sum_probs=32.6
Q ss_pred ccCCCCcccCcccccccCC-CCCCCCccCccccCC---cccCcccccccc
Q psy6282 46 KSIDGGTRFCDKCYQVKAD-RSHHCSVCGKCVLKM---DHHCPWVNNCVS 91 (251)
Q Consensus 46 ~~~~~~~~~C~~C~~~kP~-Rs~HC~~C~~CV~~~---DHHC~wl~nCIG 91 (251)
++......||.+|+.+.+. ..+||..||.|.+.- =-||.--|.|+.
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 3445567899999988544 458899998888862 256776676654
No 12
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=52.55 E-value=3.8 Score=29.90 Aligned_cols=24 Identities=25% Similarity=0.570 Sum_probs=17.7
Q ss_pred ccCccccc--ccCCCCCCCCccCccc
Q psy6282 53 RFCDKCYQ--VKADRSHHCSVCGKCV 76 (251)
Q Consensus 53 ~~C~~C~~--~kP~Rs~HC~~C~~CV 76 (251)
..|..|+. ---.|-|||+.||+-+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if 45 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF 45 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE
T ss_pred CcccCcCCccccccccccCCCCCCee
Confidence 56888874 3456899999998743
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=48.91 E-value=5.6 Score=32.21 Aligned_cols=24 Identities=33% Similarity=0.839 Sum_probs=15.2
Q ss_pred ccCccccc--ccCCCCCCCCccCccc
Q psy6282 53 RFCDKCYQ--VKADRSHHCSVCGKCV 76 (251)
Q Consensus 53 ~~C~~C~~--~kP~Rs~HC~~C~~CV 76 (251)
..|..|.. ---.|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 46777762 2234678888887643
No 14
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=48.51 E-value=7.7 Score=23.61 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=17.0
Q ss_pred ccCcccccccCCCCCCCCccCc
Q psy6282 53 RFCDKCYQVKADRSHHCSVCGK 74 (251)
Q Consensus 53 ~~C~~C~~~kP~Rs~HC~~C~~ 74 (251)
=-|..|+..-||-..||..|-.
T Consensus 12 WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 12 WQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp EECSSSCCEECSSCCBCTTTCC
T ss_pred eecccccccCCCccchhHHHHH
Confidence 3488888888888888877743
No 15
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=47.76 E-value=8.5 Score=22.90 Aligned_cols=21 Identities=24% Similarity=0.673 Sum_probs=17.0
Q ss_pred ccCcccccccCCCCCCCCccC
Q psy6282 53 RFCDKCYQVKADRSHHCSVCG 73 (251)
Q Consensus 53 ~~C~~C~~~kP~Rs~HC~~C~ 73 (251)
=-|..|+..-||-..||..|-
T Consensus 14 WkC~~C~~~N~Pl~r~C~rCw 34 (46)
T 2c6a_A 14 WKCTSCNEMNPPLPSHCNRCW 34 (46)
T ss_dssp EECTTTCCEECSSCSSCTTTC
T ss_pred EecccccccCCCccchhhHHH
Confidence 458999988888888887774
No 16
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=40.87 E-value=11 Score=27.43 Aligned_cols=25 Identities=32% Similarity=0.848 Sum_probs=21.7
Q ss_pred CcccCcccccccCCCCCCCCc--cCcc
Q psy6282 51 GTRFCDKCYQVKADRSHHCSV--CGKC 75 (251)
Q Consensus 51 ~~~~C~~C~~~kP~Rs~HC~~--C~~C 75 (251)
....|.+|...-|+|+..|+. ||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 358999999999999999994 8754
No 17
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=39.74 E-value=17 Score=23.74 Aligned_cols=27 Identities=22% Similarity=0.604 Sum_probs=20.3
Q ss_pred cccCcccccc---cCCCCCCCCccCccccC
Q psy6282 52 TRFCDKCYQV---KADRSHHCSVCGKCVLK 78 (251)
Q Consensus 52 ~~~C~~C~~~---kP~Rs~HC~~C~~CV~~ 78 (251)
...|..|+.. ++.-+-||+.|+.-|+-
T Consensus 28 ~Y~C~~CG~~~e~~~~d~irCp~CG~RILy 57 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAVRCKDCGHRILL 57 (70)
T ss_dssp CEECSSSCCEECCCTTSTTCCSSSCCCCCB
T ss_pred EEECCCCCCcceeCCCCCccCCCCCceEeE
Confidence 4679999864 55667799999986653
No 18
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=38.35 E-value=9.8 Score=33.28 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=21.7
Q ss_pred CCCcccCccccccc---CCCCCCCCccCccccC
Q psy6282 49 DGGTRFCDKCYQVK---ADRSHHCSVCGKCVLK 78 (251)
Q Consensus 49 ~~~~~~C~~C~~~k---P~Rs~HC~~C~~CV~~ 78 (251)
.....+|..|+..- -.|-|||+.|+..|-+
T Consensus 354 ~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 354 FEETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 34568999998543 4688999988765544
No 19
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=37.40 E-value=5.7 Score=29.85 Aligned_cols=32 Identities=25% Similarity=0.621 Sum_probs=22.5
Q ss_pred ccCcccccccCCCCCCCCccCccccC--Cc-ccCc
Q psy6282 53 RFCDKCYQVKADRSHHCSVCGKCVLK--MD-HHCP 84 (251)
Q Consensus 53 ~~C~~C~~~kP~Rs~HC~~C~~CV~~--~D-HHC~ 84 (251)
..|..|.+=+..--.||..||.|+.. .| |.|.
T Consensus 102 ~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~ 136 (143)
T 2dkt_A 102 ESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCI 136 (143)
T ss_dssp TTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCS
T ss_pred CCCCceeccCCcCcEECCcCCeeeccccCcCcccC
Confidence 34566666666778999999999643 34 7774
No 20
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=37.24 E-value=17 Score=23.00 Aligned_cols=22 Identities=27% Similarity=0.656 Sum_probs=17.9
Q ss_pred CcccCcccccccCCCCCCCCccCc
Q psy6282 51 GTRFCDKCYQVKADRSHHCSVCGK 74 (251)
Q Consensus 51 ~~~~C~~C~~~kP~Rs~HC~~C~~ 74 (251)
.++.|..|+.+-- .+.|..||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 4689999998877 777888875
No 21
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=35.94 E-value=13 Score=29.28 Aligned_cols=26 Identities=12% Similarity=0.369 Sum_probs=21.4
Q ss_pred ccCCcccccCCCCcccCcccccccCC
Q psy6282 39 ASLPVLNKSIDGGTRFCDKCYQVKAD 64 (251)
Q Consensus 39 ~~~~~~~~~~~~~~~~C~~C~~~kP~ 64 (251)
+.+.++..+...+.|.|.+|+.+||-
T Consensus 62 ~~~~~~~~~~~~G~K~C~~Cg~~Kp~ 87 (200)
T 3gox_A 62 EAIDIYRTGKGYDKKICNICHILKNT 87 (200)
T ss_dssp EECCGGGSSTTSSEEECTTTCBEEEG
T ss_pred ceeeeeeccccCCCeECCCCCCCcch
Confidence 35667777888889999999999884
No 22
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=32.15 E-value=16 Score=24.62 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=8.3
Q ss_pred ccCcccccccCCCCCCCCcc
Q psy6282 53 RFCDKCYQVKADRSHHCSVC 72 (251)
Q Consensus 53 ~~C~~C~~~kP~Rs~HC~~C 72 (251)
-||.+| ++||-+|
T Consensus 25 CyCKkC-------c~HCq~C 37 (86)
T 1tac_A 25 AHAKKS-------AYHSQVA 37 (86)
T ss_dssp SSTTTT-------TTTCCCS
T ss_pred ceecch-------hhhhhHH
Confidence 455555 5777776
No 23
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=31.66 E-value=27 Score=25.75 Aligned_cols=25 Identities=28% Similarity=0.672 Sum_probs=18.3
Q ss_pred CCcccCcccccccCCC--------CCCCCccCc
Q psy6282 50 GGTRFCDKCYQVKADR--------SHHCSVCGK 74 (251)
Q Consensus 50 ~~~~~C~~C~~~kP~R--------s~HC~~C~~ 74 (251)
...+||..|+..-.++ -+-|+.|+.
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY 54 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSY 54 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCC
Confidence 4579999999765444 267888876
No 24
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=31.39 E-value=9.8 Score=30.43 Aligned_cols=18 Identities=22% Similarity=0.687 Sum_probs=14.4
Q ss_pred cCCCCCCCCccCccccCC
Q psy6282 62 KADRSHHCSVCGKCVLKM 79 (251)
Q Consensus 62 kP~Rs~HC~~C~~CV~~~ 79 (251)
++.|..||..|..|++|.
T Consensus 191 ~~~~~~~CG~C~~C~~r~ 208 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLRA 208 (232)
T ss_dssp TSCCTTTTSCSHHHHHHH
T ss_pred CCCCCCcCCcCHhHHHHH
Confidence 455568999999999873
No 25
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=28.41 E-value=61 Score=21.93 Aligned_cols=26 Identities=27% Similarity=0.627 Sum_probs=22.3
Q ss_pred cccCcccccccCCCCCCCCccCcccc
Q psy6282 52 TRFCDKCYQVKADRSHHCSVCGKCVL 77 (251)
Q Consensus 52 ~~~C~~C~~~kP~Rs~HC~~C~~CV~ 77 (251)
-..|..|+.+--.--.-|++|+|+..
T Consensus 15 D~~C~VC~~~t~~~l~pCRvC~RvfH 40 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCRVCTRVFH 40 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCSSSSSCCC
T ss_pred CcccCccccccccceecccccccccc
Confidence 36799999999888899999998654
No 26
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=28.22 E-value=39 Score=17.10 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCChhh
Q psy6282 3 PLGTAPKHFKLSPSL 17 (251)
Q Consensus 3 dPG~~p~~~~~~~~~ 17 (251)
|||.+|+..-+-..+
T Consensus 2 ~PG~P~P~LPpRPaN 16 (26)
T 1wa7_B 2 DPGMPTPPLPPRPAN 16 (26)
T ss_dssp CCCCCCCCCCCCTTS
T ss_pred CCCCCCCCCCCCccc
Confidence 799999876655444
No 27
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=27.41 E-value=28 Score=21.96 Aligned_cols=22 Identities=36% Similarity=0.839 Sum_probs=17.0
Q ss_pred CcccCcccccccCCCCCCCCccCc
Q psy6282 51 GTRFCDKCYQVKADRSHHCSVCGK 74 (251)
Q Consensus 51 ~~~~C~~C~~~kP~Rs~HC~~C~~ 74 (251)
.++.|..|+.+-- ...|..||.
T Consensus 4 ~mr~C~~Cg~YTL--k~~CP~CG~ 25 (60)
T 2aus_D 4 RIRKCPKCGRYTL--KETCPVCGE 25 (60)
T ss_dssp CCEECTTTCCEES--SSBCTTTCS
T ss_pred cceECCCCCCEEc--cccCcCCCC
Confidence 4688999988877 666888875
No 28
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=27.03 E-value=13 Score=32.63 Aligned_cols=23 Identities=39% Similarity=0.826 Sum_probs=0.0
Q ss_pred cccCccccc--ccCCCCCCCCccCc
Q psy6282 52 TRFCDKCYQ--VKADRSHHCSVCGK 74 (251)
Q Consensus 52 ~~~C~~C~~--~kP~Rs~HC~~C~~ 74 (251)
..-|..|.. ---.|-|||+.||+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~ 399 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGK 399 (434)
T ss_dssp -------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcC
Confidence 466888874 23347799999986
No 29
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=25.19 E-value=15 Score=19.01 Aligned_cols=10 Identities=20% Similarity=0.800 Sum_probs=6.8
Q ss_pred cccCcccccc
Q psy6282 52 TRFCDKCYQV 61 (251)
Q Consensus 52 ~~~C~~C~~~ 61 (251)
+.||..|..+
T Consensus 3 RpYCe~CE~F 12 (26)
T 2hqh_E 3 RPYCEICEMF 12 (26)
T ss_dssp -CEETTTTEE
T ss_pred CccchHHHHh
Confidence 4688888765
No 30
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=25.11 E-value=28 Score=21.87 Aligned_cols=21 Identities=33% Similarity=0.752 Sum_probs=17.1
Q ss_pred ccCcccccccCCCCCCCCccCcc
Q psy6282 53 RFCDKCYQVKADRSHHCSVCGKC 75 (251)
Q Consensus 53 ~~C~~C~~~kP~Rs~HC~~C~~C 75 (251)
|-|..|+..++.. -|..|+.|
T Consensus 2 rAC~~C~~v~~~~--~CpnC~~~ 22 (59)
T 3lpe_B 2 RACLKCKYLTNDE--ICPICHSP 22 (59)
T ss_dssp EEETTTCBEESSS--BCTTTCCB
T ss_pred cccccCCcccCCC--CCCCCCCC
Confidence 5699999999887 58888875
No 31
>2xoc_A E3 ubiquitin-protein ligase CHFR; zinc-binding, poly(ADP-ribose) mitosis, antephase checkpoint, cell cycle; HET: PGE ADP ADE; 1.89A {Homo sapiens} PDB: 2xoy_A* 2xoz_A* 2xp0_A
Probab=24.07 E-value=36 Score=28.13 Aligned_cols=35 Identities=26% Similarity=0.656 Sum_probs=27.0
Q ss_pred cCCcccccCCCCcccCcccccccCCC-----------CCCCCccCc
Q psy6282 40 SLPVLNKSIDGGTRFCDKCYQVKADR-----------SHHCSVCGK 74 (251)
Q Consensus 40 ~~~~~~~~~~~~~~~C~~C~~~kP~R-----------s~HC~~C~~ 74 (251)
...-+.+...+....|..|....|.| ..+|.+|.+
T Consensus 67 ~~~gf~Cp~~~~H~~C~~C~~~MP~R~~~~~~~~~~~pq~C~iC~r 112 (261)
T 2xoc_A 67 AVQDYVCPLQGSHALCTCCFQPMPDRRVEREQDPRVAPQQCAVCLQ 112 (261)
T ss_dssp ---CCCCCTTCCEEECTTTCCEEECCHHHHHTCTTSCCCBCTTTCC
T ss_pred CCCCCcCCCCCCCcCcCcccCcCCCCCccccccCCCCCCCCCCcCc
Confidence 34456677778889999999999998 678998875
No 32
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=24.01 E-value=30 Score=21.71 Aligned_cols=21 Identities=43% Similarity=0.903 Sum_probs=14.4
Q ss_pred CcccCcccccccCCCCCC-CCccC
Q psy6282 51 GTRFCDKCYQVKADRSHH-CSVCG 73 (251)
Q Consensus 51 ~~~~C~~C~~~kP~Rs~H-C~~C~ 73 (251)
....|..|+..+ +.|| |..||
T Consensus 29 ~l~~c~~cG~~~--~pH~vc~~CG 50 (60)
T 2zjr_Z 29 NLTECPQCHGKK--LSHHICPNCG 50 (60)
T ss_dssp CCEECTTTCCEE--CTTBCCTTTC
T ss_pred CceECCCCCCEe--CCceEcCCCC
Confidence 357799999885 4444 77776
No 33
>1h7d_A Aminolevulinic acid synthase 2, erythroid; acyltransferase, ALAS, presequence, structure; NMR {Mus musculus} SCOP: j.88.1.1 PDB: 1h7j_A
Probab=23.44 E-value=28 Score=21.01 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=10.3
Q ss_pred CCcccCccccccc
Q psy6282 78 KMDHHCPWVNNCV 90 (251)
Q Consensus 78 ~~DHHC~wl~nCI 90 (251)
.++|+||+++.+=
T Consensus 6 ~~l~~CPFL~R~p 18 (49)
T 1h7d_A 6 MLLRSCPVLSQGP 18 (49)
T ss_dssp CSCCSCCCCSSCS
T ss_pred hhhccCCchhcCC
Confidence 4679999998763
No 34
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=21.89 E-value=35 Score=16.07 Aligned_cols=12 Identities=33% Similarity=0.769 Sum_probs=7.4
Q ss_pred CCCCCccCcccc
Q psy6282 66 SHHCSVCGKCVL 77 (251)
Q Consensus 66 s~HC~~C~~CV~ 77 (251)
.+-|..|++...
T Consensus 2 ~~~C~~C~~~f~ 13 (29)
T 1ard_A 2 SFVCEVCTRAFA 13 (29)
T ss_dssp CCBCTTTCCBCS
T ss_pred CeECCCCCcccC
Confidence 466777776543
No 35
>2xzm_5 Ribosomal protein S26E containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_5
Probab=21.53 E-value=23 Score=25.52 Aligned_cols=17 Identities=29% Similarity=0.460 Sum_probs=12.8
Q ss_pred CCCCccCccccCCcccC
Q psy6282 67 HHCSVCGKCVLKMDHHC 83 (251)
Q Consensus 67 ~HC~~C~~CV~~~DHHC 83 (251)
=||..|++||.+----+
T Consensus 21 V~C~nCgr~vPKDKAIK 37 (119)
T 2xzm_5 21 VPCTNCGRQVAKDKAVK 37 (119)
T ss_dssp EECTTTCCEEETTTSEE
T ss_pred EeeCCccccCcccceeE
Confidence 36999999999854444
No 36
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=21.42 E-value=16 Score=24.59 Aligned_cols=6 Identities=50% Similarity=1.641 Sum_probs=3.3
Q ss_pred ccCccc
Q psy6282 53 RFCDKC 58 (251)
Q Consensus 53 ~~C~~C 58 (251)
-||.+|
T Consensus 25 CYCKkC 30 (86)
T 3mi9_C 25 CYCKKC 30 (86)
T ss_dssp CCSTTG
T ss_pred ccccch
Confidence 455555
No 37
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=21.11 E-value=50 Score=17.99 Aligned_cols=20 Identities=25% Similarity=0.690 Sum_probs=14.6
Q ss_pred cCcccccccCCCCCCCCccC
Q psy6282 54 FCDKCYQVKADRSHHCSVCG 73 (251)
Q Consensus 54 ~C~~C~~~kP~Rs~HC~~C~ 73 (251)
-|..|-..-++.+.+|..|+
T Consensus 9 ~C~~C~~~N~~~~~kC~aC~ 28 (33)
T 3gj3_B 9 DCDTCLVQNKPEAVKCVACE 28 (33)
T ss_dssp ECTTTCCEECTTCSBCTTTC
T ss_pred eCCcccCCCccccCEEcccC
Confidence 37777777777777777775
No 38
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.78 E-value=31 Score=16.15 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=8.0
Q ss_pred CCCCCCccCcccc
Q psy6282 65 RSHHCSVCGKCVL 77 (251)
Q Consensus 65 Rs~HC~~C~~CV~ 77 (251)
|.+-|..|++-..
T Consensus 2 k~~~C~~C~k~f~ 14 (27)
T 2kvh_A 2 KPFSCSLCPQRSR 14 (27)
T ss_dssp CCEECSSSSCEES
T ss_pred cCccCCCcChhhC
Confidence 4566777776443
No 39
>3u5c_a 40S ribosomal protein S26-A, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_a
Probab=20.73 E-value=23 Score=25.51 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=11.5
Q ss_pred CCCCccCccccCCcc
Q psy6282 67 HHCSVCGKCVLKMDH 81 (251)
Q Consensus 67 ~HC~~C~~CV~~~DH 81 (251)
=||..|++||.+---
T Consensus 21 V~C~nCgr~vPKDKA 35 (119)
T 3u5c_a 21 VRCVNCSKSIPKDKA 35 (119)
T ss_dssp EECTTTCCEEEGGGS
T ss_pred Eeeccccccccccce
Confidence 359999999998433
No 40
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=20.42 E-value=22 Score=27.78 Aligned_cols=17 Identities=24% Similarity=0.606 Sum_probs=13.6
Q ss_pred cCCCCCCCCccCccccC
Q psy6282 62 KADRSHHCSVCGKCVLK 78 (251)
Q Consensus 62 kP~Rs~HC~~C~~CV~~ 78 (251)
.+.|..||..|..|+.|
T Consensus 188 ~~~~~~~CG~C~~C~~r 204 (219)
T 3bl5_A 188 NGIIADGCGECPACHLR 204 (219)
T ss_dssp TSCCSSCCSCSHHHHHH
T ss_pred CCCCCCCCCCCHHHHHH
Confidence 45556899999999877
No 41
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=20.23 E-value=20 Score=24.10 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=16.6
Q ss_pred cccCcccccccCCCCCCCCccCcccc
Q psy6282 52 TRFCDKCYQVKADRSHHCSVCGKCVL 77 (251)
Q Consensus 52 ~~~C~~C~~~kP~Rs~HC~~C~~CV~ 77 (251)
...|..|+..-++.+ .|..|+.=+.
T Consensus 18 ~~~C~~C~~~~~~~a-fCPeCgq~Le 42 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA-LCPDCRQPLQ 42 (81)
T ss_dssp EEECTTTCCEEEEEE-ECSSSCSCCC
T ss_pred ceECccccccCCCcc-cCcchhhHHH
Confidence 455777777666666 7777766443
Done!