RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6282
(251 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.013
Identities = 22/174 (12%), Positives = 53/174 (30%), Gaps = 21/174 (12%)
Query: 8 PKHFKLSPSLQHALFTTDNDVERKQILEQF-SASLPVLNKSIDGGT-----RFCDKCYQV 61
P + L ++ + ++ + SL + K T + + ++
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLELKVKL 439
Query: 62 KADRSHHCSVCGKCVLKMDHHCPWVNNCVSFTNYKYFLLFLGYALLYCIYG---SLSTLP 118
+ + + H S+ + + +YF +G+ L + +L +
Sbjct: 440 ENEYALHRSIV-DHYNIPKTFDSD--DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 119 YF-IQFWEGSFVHSGKFHILFLCFVAAMFSLSLVALFGYHLYLVAQNKTTLEAI 171
+ +F E H ++ + L L Y Y + N E +
Sbjct: 497 FLDFRFLEQKIRHDS----TAWNASGSILNT-LQQLKFYKPY-ICDNDPKYERL 544
Score = 34.4 bits (78), Expect = 0.034
Identities = 33/216 (15%), Positives = 62/216 (28%), Gaps = 72/216 (33%)
Query: 9 KHFKLSPSLQHALFTTDNDVERKQILEQFSASLPVL----NKSIDGGTRFCDKCYQVKAD 64
+ S ++ L +V+ + F+ S +L K + T F + A
Sbjct: 235 RRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKILLTTRFKQV---TDF------LSAA 284
Query: 65 RSHHCSVCGKCVLKMDHHCPWVNNCVSFTNYKYFLLFLGYALLYCIYGSLSTLPYFIQFW 124
+ H + +DHH + T + L L Y LP
Sbjct: 285 TTTH--------ISLDHHSM------TLTPDEVKSLLLKYLDC-----RPQDLP------ 319
Query: 125 EGSFVHSGKFHILFLCFVAAMFSLSLVALFGYHLYLVAQNKTT-----LEAIRPPVFSYG 179
V + + L +A +A + ++ TT L + P +
Sbjct: 320 --REVLTT--NPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--- 371
Query: 180 PDKQGYNLGCKRNFIE--IFGEN--------KLLWF 205
++ F +F + L+WF
Sbjct: 372 ----------RKMFDRLSVFPPSAHIPTILLSLIWF 397
Score = 30.6 bits (68), Expect = 0.62
Identities = 47/225 (20%), Positives = 67/225 (29%), Gaps = 87/225 (38%)
Query: 1 MTPLGTAPKHFKLSPSLQHALFT-------TDND------VERKQILEQFSASL----PV 43
M+P+ T + PS+ ++ DN V R Q + +L P
Sbjct: 95 MSPIKTEQR----QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 44 LNKSIDG--GTRFCDKCYQVKADRSHHCSVCGKCVL------------KMDHHCPWVN-- 87
N IDG G GK + KMD W+N
Sbjct: 151 KNVLIDGVLG--------------------SGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 88 NCVSFTNYKYFLLFLGYALLYCIYGSLSTLPYFIQFWEGSFVHSGKFHILFLCFVAAMFS 147
NC S +L + LLY I + ++ + HS + + L + +
Sbjct: 191 NCNSPET----VLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRL-LKSKPYE 244
Query: 148 LSLVALFGYHLYL--VAQNKTTLEAIRPPVFSYGPDKQGYNLGCK 190
L L L V QN A F NL CK
Sbjct: 245 NCL-------LVLLNV-QNAKAWNA-----F---------NLSCK 267
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.031
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 6 TAPKHFKLSPSLQHALFTTDNDVERKQILEQFSAS---LPVLNKSIDG 50
+P H S L A + D+ + + F+A +PV + + DG
Sbjct: 424 ASPFH---SHLLVPASDLINKDLVKNNV--SFNAKDIQIPVYD-TFDG 465
Score = 29.2 bits (65), Expect = 1.5
Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 63/128 (49%)
Query: 140 CFVAAMFSLSLVALFGYHLYL--------VAQNKTTLEAIRPPVFSYGPDKQGYNLGCKR 191
V + SL L +L L + Q++ R FS
Sbjct: 376 NLVVSGPPQSLYGL---NLTLRKAKAPSGLDQSRIPFSE-RKLKFSN------------- 418
Query: 192 NFIEIFGENKLLWFFPVHTHL-------------GDGIRF-------PVRGSNVNQYNSM 231
F+ + P H+HL + + F PV Y++
Sbjct: 419 RFLPVAS--------PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV-------YDT- 462
Query: 232 GNTQGTDL 239
G+DL
Sbjct: 463 --FDGSDL 468
Score = 28.5 bits (63), Expect = 3.0
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 5 GTAPKHFKLS-PSLQHALFT-TDNDVERKQILEQFSASLP 42
+ + LS SL+H L T + Q+ EQF+ LP
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILP 42
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.19
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 10/29 (34%)
Query: 31 KQILEQFSASL--------PVL--NKSID 49
KQ L++ ASL P L +++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 30.0 bits (67), Expect = 0.38
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 54 FCDKCYQVKADRSHHCSVCGKCVLKMDHHCPWVNNCVS 91
FC C R C +C + +K + ++NC++
Sbjct: 86 FCSYCINEWMKRKIECPIC-RKDIKSKTYSLVLDNCIN 122
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin,
immunoglobulin-like fold, PSI beta barrel, structural
genomics; HET: NAG; 2.90A {Phleum pratense} SCOP:
b.7.3.1 b.52.1.3
Length = 241
Score = 29.8 bits (66), Expect = 0.81
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 44 LNKSIDGGTRFCDKCYQVKADRSHHCSVCGKCVLKMDHHCPWVNN 88
N I R C C+++K + CS V D + +
Sbjct: 59 GNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAP 103
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1;
RCHY1, structural genomics, NPPSFA; NMR {Mus musculus}
SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Length = 143
Score = 28.9 bits (64), Expect = 0.91
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 54 FCDKCYQVKADRSHHCSVCGKCV---LKMDHHC 83
C C + HC C C+ L+ H C
Sbjct: 103 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 135
Score = 27.0 bits (59), Expect = 3.6
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 45 NKSIDGGTRFCDKCYQVKADRSH-HCSVCGKCVLKMDH---HCPWVNNCVS 91
+ S G +C C+ D+ HC CG C + HC N C++
Sbjct: 76 DCSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 28.6 bits (63), Expect = 1.2
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 51 GTRFCDKCYQVKADRSHHCSVCGKCVLKMDHH 82
G FC +C + ++ C C K + +H
Sbjct: 98 GHVFCSQCLRDSLKNANTCPTCRKKINHKRYH 129
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 28.6 bits (64), Expect = 2.0
Identities = 3/24 (12%), Positives = 7/24 (29%)
Query: 53 RFCDKCYQVKADRSHHCSVCGKCV 76
+ C + + + C C
Sbjct: 361 KACQMLLRGTFYQGYRCYRCRAPA 384
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling
protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB:
3nvq_B*
Length = 476
Score = 27.6 bits (60), Expect = 4.3
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 56 DKCYQVKADRSHHCSVCGKCVLKMDHHCPW 85
+ +++ + C +C+ D HC W
Sbjct: 411 KEVRRIRVANCNKHKSCSECLTATDPHCGW 440
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 26.5 bits (58), Expect = 5.8
Identities = 11/47 (23%), Positives = 14/47 (29%), Gaps = 11/47 (23%)
Query: 49 DGGTRFCDKCYQV--KADRSHHCSVCGKCVLKMDHHCPWVNNCVSFT 93
D + C C + R HHC CG C C +
Sbjct: 66 DNEVQNCMACGKGFSVTVRRHHCRQCGNIF------C---AECSAKN 103
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Length = 89
Score = 25.9 bits (56), Expect = 5.8
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 53 RFCDKCYQVKADRSHHCSVCGKC 75
CD C A+ C VC +
Sbjct: 16 EMCDVCEVWTAESLFPCRVCTRV 38
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical
protein, structural genomics, JOIN for structural
genomics; 2.40A {Pectobacterium atrosepticum SCRI1043}
SCOP: c.26.2.1
Length = 232
Score = 26.9 bits (60), Expect = 6.3
Identities = 6/20 (30%), Positives = 7/20 (35%), Gaps = 2/20 (10%)
Query: 58 CYQVKADRSHHCSVCGKCVL 77
CY + C C C L
Sbjct: 189 CY--NGIKGDGCGQCAACHL 206
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.6 bits (58), Expect = 6.5
Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 18/74 (24%)
Query: 30 RKQILEQFSASLPVLNKSIDGGTRFCDKCYQVKA----DRSHHCSVCGKCVLKMDHHC-- 83
R+ I ++ P LN C +C S VC C L +
Sbjct: 4 RESIDKRAGRRGPNLNI-----VLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58
Query: 84 --P-WVNNCVSFTN 94
W +F+N
Sbjct: 59 TRSEW----RTFSN 68
>3oky_B Putative uncharacterized protein; transmembrane, ligand,
SEMA-domain, cell-CELL signalling, SI protein; HET: NAG;
2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Length = 565
Score = 27.0 bits (58), Expect = 6.6
Identities = 8/42 (19%), Positives = 13/42 (30%), Gaps = 4/42 (9%)
Query: 56 DKCYQVKADR-SHHCSVCGKCVLKMDHHCPW---VNNCVSFT 93
+V R H C+ D +C W +C +
Sbjct: 490 TCVIKVPLGRCERHGKCKKTCIASRDPYCGWVRESGSCAHLS 531
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein
VPS27; endosome maturation, intracellular trafficking;
1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Length = 73
Score = 25.0 bits (55), Expect = 6.8
Identities = 6/12 (50%), Positives = 6/12 (50%)
Query: 65 RSHHCSVCGKCV 76
R HHC CG
Sbjct: 26 RKHHCRSCGGVF 37
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 24.5 bits (53), Expect = 8.2
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 62 KADRSHHCSVCGKCVLKMDH 81
+ + C +CGK + H
Sbjct: 8 RTRKQVACEICGKIFRDVYH 27
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 26.1 bits (56), Expect = 9.3
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 29 ERKQILEQFSASLPVLNKSIDGGTRFCDKC---YQVKADRSHHCS-----VCGKCVLKMD 80
K +++ S+ +L+ + C +C Y++ + C VC C
Sbjct: 45 GLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP 104
Query: 81 HHCPWV-NNCVSFTNYK 96
W+ + C K
Sbjct: 105 EEQGWLCDPCHLARVVK 121
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural
genomics consortium, SGC, lipid BIND protein, transport
protein; 1.09A {Homo sapiens}
Length = 90
Score = 25.2 bits (55), Expect = 9.3
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 65 RSHHCSVCGKCV 76
R HHC CGK
Sbjct: 35 RRHHCRACGKVF 46
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA
modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Length = 219
Score = 26.1 bits (58), Expect = 9.5
Identities = 6/20 (30%), Positives = 7/20 (35%), Gaps = 2/20 (10%)
Query: 58 CYQVKADRSHHCSVCGKCVL 77
CY + C C C L
Sbjct: 186 CY--NGIIADGCGECPACHL 203
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.467
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,814,913
Number of extensions: 216822
Number of successful extensions: 647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 46
Length of query: 251
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 160
Effective length of database: 4,160,982
Effective search space: 665757120
Effective search space used: 665757120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (25.8 bits)