RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6282
(251 letters)
>d1jaka2 d.92.2.1 (A:8-150) beta-N-acetylhexosaminidase, N-terminal
domain {Streptomyces plicatus [TaxId: 1922]}
Length = 143
Score = 29.4 bits (65), Expect = 0.23
Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 8/99 (8%)
Query: 117 LPYFIQFWEGSFVHSGKFHILF-----LCFVAAMFSLSLVALFGYHLYLVAQNKTTLEAI 171
P + + + HI V + L GY L + A I
Sbjct: 17 APASVDPGGAPYRITRGTHIRVDDSREARRVGDYLADLLRPATGYRLPVTAHGHG---GI 73
Query: 172 RPPVFSYGPDKQGYNLGCKRNFIEIFGENKLLWFFPVHT 210
R + +GY L + I F V T
Sbjct: 74 RLRLAGGPYGDEGYRLDSGPAGVTITARKAAGLFHGVQT 112
>d1qbaa4 d.92.2.1 (A:201-337) Bacterial chitobiase, Domain 2
{Serratia marcescens [TaxId: 615]}
Length = 137
Score = 28.5 bits (63), Expect = 0.40
Identities = 9/95 (9%), Positives = 24/95 (25%), Gaps = 1/95 (1%)
Query: 117 LPYFIQFWEGSFVHSGKFHILFLCFVAAMFSLSLVALFGYHLYLVAQNKTTLEAIRPPVF 176
P ++ + V + + + I+P F
Sbjct: 20 TPMQVKVHAQDADLRKGVALDLSTLVKPAADVVSQRFALLGVPVQTNGYPIKTDIQPGKF 79
Query: 177 S-YGPDKQGYNLGCKRNFIEIFGENKLLWFFPVHT 210
Y L + ++ G ++ F+ + +
Sbjct: 80 KGAMAVSGAYELKIGKKEAQVIGFDQAGVFYGLQS 114
>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal
domain {Timothy grass (Phleum pratense) [TaxId: 15957]}
Length = 143
Score = 28.1 bits (62), Expect = 0.60
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 44 LNKSIDGGTRFCDKCYQVKADRSHHCSVCGKCVLKMDHHCPWVNN 88
N I R C C+++K + CS V D + +
Sbjct: 57 GNTPIFKSGRGCGSCFEIKCTKPEACSGEPVVVHITDDNEEPIAP 101
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger
domain-containing protein 1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 56
Score = 25.4 bits (56), Expect = 1.3
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 51 GTRFCDKCYQVKADRSH-HCSVCGKCVL---KMDHHCPWVNNCVS 91
G +C C+ D+ HC CG C + + HC N C++
Sbjct: 1 GEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 45
Score = 24.3 bits (53), Expect = 3.7
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 54 FCDKCYQVKADRSHHCSVCGKCV---LKMDHHC 83
C C + HC C C+ L+ H C
Sbjct: 22 SCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKC 54
>d2choa3 d.92.2.3 (A:5-126) Glucosaminidase GH84, N-terminal domain
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 122
Score = 26.3 bits (57), Expect = 2.2
Identities = 10/101 (9%), Positives = 31/101 (30%), Gaps = 11/101 (10%)
Query: 118 PYFIQFWEGSFVHSGKFHILF--------LCFVAAMFSLSLVALFGYHLYLVAQNKTTLE 169
P + + + + + + + S + G + + + ++
Sbjct: 5 PQQLIVQNKTIDLPAVYQLNGGEEANPHAVKVLKELLSGKQSSKKGMLISIGEKGDKSVR 64
Query: 170 AIRPPVFSYGPDKQGYNLGCKRNFIEIFGENKLLWFFPVHT 210
+ K+GY L I + G ++ ++ + T
Sbjct: 65 KYSRQIPD---HKEGYYLSVNEKEIVLAGNDERGTYYALQT 102
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC
{Erwinia carotovora [TaxId: 554]}
Length = 230
Score = 26.5 bits (57), Expect = 3.2
Identities = 6/20 (30%), Positives = 7/20 (35%), Gaps = 2/20 (10%)
Query: 58 CYQVKADRSHHCSVCGKCVL 77
CY + C C C L
Sbjct: 188 CYN--GIKGDGCGQCAACHL 205
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 124
Score = 25.8 bits (56), Expect = 3.3
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)
Query: 32 QILEQFSASLPVLNKSIDG-GTRFCDKCYQVK---ADRSHHCSVCGKCV 76
+ + + L + K++ G G C C + S C C K V
Sbjct: 27 ERIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNV 75
>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel
(Mytilus edulis) [TaxId: 6550]}
Length = 180
Score = 25.8 bits (56), Expect = 4.8
Identities = 5/40 (12%), Positives = 12/40 (30%), Gaps = 6/40 (15%)
Query: 55 CDKCYQVKADRSHHCSVCGKC------VLKMDHHCPWVNN 88
C +C ++ + G + + CP +
Sbjct: 69 CGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYP 108
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 10, ZMYND10 {Human (Homo sapiens) [TaxId:
9606]}
Length = 47
Score = 23.8 bits (51), Expect = 5.3
Identities = 6/27 (22%), Positives = 7/27 (25%)
Query: 63 ADRSHHCSVCGKCVLKMDHHCPWVNNC 89
A C+ C K C C
Sbjct: 5 APERPRCAYCSAEASKRCSRCQNEWYC 31
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 23.4 bits (50), Expect = 5.6
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 62 KADRSHHCSVCGKCVLKMDHHCPWVNNC 89
+ D S C CG+ + C C
Sbjct: 4 QEDSSESCWNCGRKASETCSGCNTARYC 31
>d1vr3a1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 179
Score = 25.2 bits (55), Expect = 6.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 199 ENKLLWFFPVHTHLGDGIRFPVRGS 223
E K+ FF H HL + IR+ + GS
Sbjct: 78 EEKIKMFFEEHLHLDEEIRYILEGS 102
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens)
[TaxId: 9606]}
Length = 56
Score = 23.4 bits (50), Expect = 7.2
Identities = 9/24 (37%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 72 CGKCVLKMDHHCPW---VNNCVSF 92
C CVL D +C W CV+
Sbjct: 8 CEDCVLARDPYCAWSPPTATCVAL 31
>d1tn3a_ d.169.1.1 (A:) Tetranectin {Human (Homo sapiens) [TaxId:
9606]}
Length = 137
Score = 24.7 bits (52), Expect = 9.1
Identities = 9/85 (10%), Positives = 21/85 (24%)
Query: 51 GTRFCDKCYQVKADRSHHCSVCGKCVLKMDHHCPWVNNCVSFTNYKYFLLFLGYALLYCI 110
GT+ KC+ C+ + + Y+Y +G +
Sbjct: 9 GTKVHMKCFLAFTQTKTFHEASEDCISRGGTLSTPQTGSENDALYEYLRQSVGNEAEIWL 68
Query: 111 YGSLSTLPYFIQFWEGSFVHSGKFH 135
+ G+ + +
Sbjct: 69 GLNDMAAEGTWVDMTGARIAYKNWE 93
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.327 0.142 0.467
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 961,752
Number of extensions: 45006
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 200
Number of HSP's successfully gapped: 28
Length of query: 251
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 168
Effective length of database: 1,268,006
Effective search space: 213025008
Effective search space used: 213025008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.3 bits)