BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6283
(1030 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|328711134|ref|XP_003244454.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Acyrthosiphon
pisum]
Length = 1437
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/409 (62%), Positives = 322/409 (78%), Gaps = 12/409 (2%)
Query: 400 IGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHA 459
+ +++ IKFT++ +S I+++MC++NVLPLA+QIT V GN+LSRTL+GGR+ERNE+LLLHA
Sbjct: 731 VSLMQLIKFTIMDTSCIMRLMCQMNVLPLALQITKVAGNLLSRTLIGGRAERNEYLLLHA 790
Query: 460 FHEKSYVLPDKQYGK---NKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
F+EK Y+LPDKQY K NK E E K GRKKA Y GGLVL+PK GFYDK I+LM
Sbjct: 791 FNEKGYILPDKQYKKRSMNKNEDNVEEENTKKNGRKKAQYLGGLVLDPKIGFYDKMILLM 850
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQ----DSDITTLCEYLPEHQVDTGILPSEIKKLVE 572
DFNSLYPSIIQEYNICFTT+ R L D +I L + P V GILP+EIK LV+
Sbjct: 851 DFNSLYPSIIQEYNICFTTVSFRTLLAQEGDDEIAELLKLTPNQSVARGILPAEIKSLVD 910
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
SRR+VK LM P +S+ L QY++RQ ALKLTANSMYGCLGF +SRF+A+PLAAL+TAKG
Sbjct: 911 SRREVKKLMNDPKISATLKEQYNLRQTALKLTANSMYGCLGFTHSRFYAKPLAALITAKG 970
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL++TK+LVE L+++VIYGDTDSLMI+ N DYD V KIG +IK+E NK+YKQ+ELDI
Sbjct: 971 REILISTKALVEKLSFDVIYGDTDSLMINSNCVDYDQVMKIGYKIKAEVNKMYKQVELDI 1030
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DG++KYMLLLKKKKYAA+SISKL +G+ I +EIKG+D+VRRDWSQL+ EAG+FV+ QIL
Sbjct: 1031 DGIFKYMLLLKKKKYAAISISKLPSGEFITKEEIKGLDIVRRDWSQLSQEAGRFVLRQIL 1090
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+Q S ++R+ NI ++K+R D + +PL LL I+K LTKAP+
Sbjct: 1091 SDQ-----SPEERVSNICAQLEKLRVDCEENNIPLGLLAISKTLTKAPQ 1134
Score = 222 bits (566), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 107/199 (53%), Positives = 141/199 (70%), Gaps = 1/199 (0%)
Query: 193 PNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQ 252
P+ LPL +D +VFR F+LDAFED++KQPG V+LFGKV +++ SCCV+V+
Sbjct: 322 PHDISSKLPLTSDKNGTQVFRFFYLDAFEDVFKQPGVVFLFGKVKPVNFDTYVSCCVVVK 381
Query: 253 NIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
NI+R+++LLPR+ +E V + VY+EF+ + +Y+I +FKSRKI KKYAF+L V D
Sbjct: 382 NIERRMFLLPRNTTSDNEE-VKMVDVYNEFNNLTDKYQIQNFKSRKITKKYAFDLADVAD 440
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLE+RYSA P LP DLSG TFS VFGT TSFLE LLL++KIKGP WL+ +
Sbjct: 441 ESEYLEIRYSASHPPLPEDLSGKTFSRVFGTNTSFLELLLLDQKIKGPCWLDIKIPQLSN 500
Query: 373 SRISWCKYEVQCNQMEKIR 391
S +SWCK EV C M+ I+
Sbjct: 501 SPMSWCKIEVLCLDMKNIQ 519
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDD-GGD 157
+T++F A KLK LK G KHKYE +NVYEE+SE+EYT+RV+KRQ+D+WI DD D
Sbjct: 17 QTSRFEALAKLKKLKSDGTKHKYEVEPMQNVYEEISEQEYTDRVVKRQQDNWIVDDYDVD 76
Query: 158 GYVEDGREIFDDDIED 173
GYVEDGREIFDDD+++
Sbjct: 77 GYVEDGREIFDDDLDE 92
>gi|357608358|gb|EHJ65949.1| putative DNA polymerase alpha catalytic subunit [Danaus plexippus]
Length = 1477
Score = 494 bits (1273), Expect = e-137, Method: Compositional matrix adjust.
Identities = 265/433 (61%), Positives = 337/433 (77%), Gaps = 17/433 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++ + +M +SYI+KIMCELNV+PLA+QIT + GN++SRTLMGGRSERNEFLLLHAF
Sbjct: 743 LLQLVSLSMQDASYILKIMCELNVIPLALQITQIAGNIMSRTLMGGRSERNEFLLLHAFT 802
Query: 462 EKSYVLPDKQYGK----NKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
EK+Y++PDK YGK + E +E G +K + +KKAAY+GGLVL+PKKGFYDK I+LMD
Sbjct: 803 EKNYIVPDKIYGKKADGDDDEQDEAGNVSKKQAKKKAAYAGGLVLDPKKGFYDKLILLMD 862
Query: 518 FNSLYPSIIQEYNICFTTIPVR--MLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRR 575
FNSLYPSIIQEYNICFTTI + D DI L LP + G+LP++I+KLVESRR
Sbjct: 863 FNSLYPSIIQEYNICFTTIKRKNGASSDDDINNLV--LPAPNTEFGVLPTQIRKLVESRR 920
Query: 576 QVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREI 635
+VK LMK P+L+S+L MQY+IRQ ALKLTANSMYGCLGF +SRF+A+PLAALVT KGREI
Sbjct: 921 EVKRLMKSPDLASELYMQYNIRQMALKLTANSMYGCLGFTHSRFYAKPLAALVTMKGREI 980
Query: 636 LLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGV 695
L++TK +V+ LNYEV+YGDTDSLMI+ N DYD VFKIGN +K E NK YKQ+ELDIDGV
Sbjct: 981 LMDTKEIVQKLNYEVVYGDTDSLMINTNCLDYDYVFKIGNDLKREINKKYKQIELDIDGV 1040
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
+KY+LLLKKKKYAA+ +SK +G+ I +QE KG+D+VRRDWSQLA+EAGKF+++QIL EQ
Sbjct: 1041 FKYLLLLKKKKYAAVVVSKSKSGEFIYNQEHKGLDIVRRDWSQLAAEAGKFILTQILSEQ 1100
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP----EGGKVCITQIR 811
+ D+RL++I H+ K++ DL N +PL+LL ITKQLTK P + Q+
Sbjct: 1101 -----TADERLESIQNHLNKLKEDLVNSKMPLSLLTITKQLTKNPNEYADKNNQPHVQVA 1155
Query: 812 LSRNRRGRRRRRR 824
L N + RR ++
Sbjct: 1156 LRLNSKNSRRFKK 1168
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 151/248 (60%), Gaps = 17/248 (6%)
Query: 160 VEDGREIFDDDIEDVPQKKEKHDKRKKNKNI-QNPNA------KDDSLPLATDHENKKVF 212
++D E F +D + K E + + + N QN N D LPL + + +V
Sbjct: 282 LQDVAEDFKEDFDIFSVKTEPKELKALSSNWSQNDNQVVVNIQSDVQLPLQKNKDGDQVL 341
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFV---KENNSHSSCCVIVQNIDRKIYLLPRSEHL-- 267
+ ++LDA+ED Y +PG VYLFGKV+V K+ +SCC++V+N++R+++LLPR L
Sbjct: 342 KFYWLDAWEDKYVKPGVVYLFGKVYVNPSKKKEGCASCCLVVKNVNRQLFLLPREYKLDP 401
Query: 268 ----KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
T + V++ VY EF+ +A++ + +FKSRK+ K Y FNLP +P +YLEV+YS
Sbjct: 402 ITLEATDQEVTMMDVYEEFNNCVASEIGLKEFKSRKVTKNYCFNLPDIPSQCDYLEVKYS 461
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEV 382
A P P TFSH+FGT TS LE+ LL+RKIKGP WLE AE +++SWCK E
Sbjct: 462 ATFPIPPVGKKYLTFSHIFGTNTSSLESFLLDRKIKGPCWLEVKNAESVQAKVSWCKLEA 521
Query: 383 QCNQMEKI 390
C++ME +
Sbjct: 522 SCDKMENV 529
Score = 90.1 bits (222), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DKT + +A +KLK LKG+G KHKY+ ENVY+ V E EY+ RVL+RQEDDWI+DDG
Sbjct: 15 VDKTGRLSALEKLKQLKGKGSKHKYDVDELENVYDLVDESEYSNRVLQRQEDDWIEDDGT 74
Query: 157 DGYVEDGR 164
GYVEDGR
Sbjct: 75 -GYVEDGR 81
>gi|242009635|ref|XP_002425588.1| DNA polymerase alpha catalytic subunit, putative [Pediculus humanus
corporis]
gi|212509481|gb|EEB12850.1| DNA polymerase alpha catalytic subunit, putative [Pediculus humanus
corporis]
Length = 1474
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 247/427 (57%), Positives = 323/427 (75%), Gaps = 13/427 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
++E I +TM +S+I+KI+ E+N LPLA+QIT + GNV+S+TL GGRSERNEFLLLHAF
Sbjct: 737 SVIELINYTMEDASHILKIVYEINALPLALQITKIAGNVMSKTLSGGRSERNEFLLLHAF 796
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
EK+Y++PDK + K + E+ EA+ +KK Y+GGLV EPKKGFYDKFI+LMDFNS
Sbjct: 797 TEKNYLVPDKSFSKKPRMNEDEMEASSKNNKKKPQYAGGLVFEPKKGFYDKFILLMDFNS 856
Query: 521 LYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
LYPSIIQEYNICFTT+ +D + P + GILP EIKKLVE+RR VK L
Sbjct: 857 LYPSIIQEYNICFTTVSRSNGEDENEINC----PPDNLPLGILPIEIKKLVETRRDVKQL 912
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK PNLS +L MQ++IRQ ALKLTANSMYGCLGF SRF+A+PLAALVT+KGREILLNTK
Sbjct: 913 MKSPNLSPELYMQHNIRQMALKLTANSMYGCLGFSYSRFYAKPLAALVTSKGREILLNTK 972
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
++VE +NY+VIYGDTDS+MI+ N +YD VF IG++IK E NKLYK +ELDIDGV+KYML
Sbjct: 973 NIVEKMNYDVIYGDTDSVMINTNCINYDEVFTIGHKIKDEINKLYKYIELDIDGVFKYML 1032
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
LLKKKKYAA+ ++K +G+++ ++E KG+D+VRRDW QL++E G+ +++QIL +D
Sbjct: 1033 LLKKKKYAAVVLTKKPSGELVATKEYKGLDIVRRDWCQLSAEVGRHILNQIL-----SDL 1087
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG----GKVCITQIRLSRNR 816
S +DR+ NI +H+++I DL + VP++LL ITKQL K PE + Q+ L N
Sbjct: 1088 SPEDRIGNIKDHLERITVDLRDRKVPISLLAITKQLAKNPEDYSDIKSLPHLQVALRMNS 1147
Query: 817 RGRRRRR 823
+G ++ R
Sbjct: 1148 KGGKKLR 1154
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 156/250 (62%), Gaps = 13/250 (5%)
Query: 151 IDDDGGDGYVEDGREIFDDDIEDVPQ-KKEKHDKRKKNKNIQNPNAKDD--SLPLATDHE 207
+D+D D ++ I DD E++P E D N N+ PN D LPL T+
Sbjct: 278 LDEDCNDEFL---NSIPLDDKEEIPSISSEWVDNNTPNINVPLPNISVDKSDLPLGTNKN 334
Query: 208 NKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL 267
+KVFR F+ DA+ED KQPG VYLFGKV+ + + SCCV V+NI R+I+LLPR +
Sbjct: 335 GEKVFRFFWWDAYEDALKQPGIVYLFGKVYYEPKKIYLSCCVAVENIPRRIFLLPRDKKF 394
Query: 268 --KTKEP----VSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVR 320
KT+E +S+ VY EF++ IAT KI++FKSRK KYAF L VP SEYLE++
Sbjct: 395 DSKTQESTETEISLLDVYKEFNENIATPNKIMNFKSRKTTLKYAFELNDVPAESEYLEIK 454
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
Y A LP DLSG+TFS VFGT TS LE LLL+RKIKGP WLE + + SWCK
Sbjct: 455 YPATYAKLPQDLSGETFSRVFGTNTSGLEVLLLDRKIKGPCWLEIKNPQTVNVQCSWCKL 514
Query: 381 EVQCNQMEKI 390
EV+C++ E +
Sbjct: 515 EVRCSKPEDV 524
Score = 77.8 bits (190), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 56/77 (72%), Gaps = 3/77 (3%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDK+ + AA ++LK LKG+ K+K E +NVYE V EKEY +RV RQ++DW+ ++ G
Sbjct: 15 IDKSGRSAALERLKALKGR--KNKCEIGEVDNVYEYVDEKEYAKRVRVRQDEDWL-ENPG 71
Query: 157 DGYVEDGREIFDDDIED 173
DGY EDGREIFD D ED
Sbjct: 72 DGYFEDGREIFDSDDED 88
>gi|195111871|ref|XP_002000500.1| GI10263 [Drosophila mojavensis]
gi|193917094|gb|EDW15961.1| GI10263 [Drosophila mojavensis]
Length = 1487
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 248/441 (56%), Positives = 319/441 (72%), Gaps = 25/441 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 754 NITKLISLTMQDASYMLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 813
Query: 461 HEKSYVLPDK-----------QYGKNKKEGEETG-EANKGKGRKKAAYSGGLVLEPKKGF 508
HEK+Y++PDK Q + G +T A G RKKAAY+GGLVLEP +G
Sbjct: 814 HEKNYIVPDKLPQRRGAVANTQTDPDATTGNDTTVAAGSGAARKKAAYAGGLVLEPLRGL 873
Query: 509 YDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
Y+K+++LMDFNSLYPSIIQEYNICFTT V+ D+D + LP+ + GILP +++
Sbjct: 874 YEKYVLLMDFNSLYPSIIQEYNICFTT--VQQPHDADQLPV---LPDSSAEPGILPMQLR 928
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
+LVESRRQVK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALV
Sbjct: 929 RLVESRRQVKKLMAVPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALV 988
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL+NT+ LV+ LNY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQL
Sbjct: 989 THKGREILVNTQQLVQKLNYDVVYGDTDSLMINTNITDYDQVYKIGHTIKQSVNKLYKQL 1048
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
ELDIDGV+ +LLLKKKKYAA+ ++K + G +I QE KG+D+VRRDWSQLA GK V+
Sbjct: 1049 ELDIDGVFACLLLLKKKKYAAVKLTKNAKGVLIREQEHKGLDIVRRDWSQLAVMVGKAVL 1108
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKVC 806
++L +D L+D+L +H + +I+ + VPL L ITKQLT+AP+
Sbjct: 1109 DEVL-----SDKPLEDKLDAVHAQLGRIKDQIAKSAVPLPLYVITKQLTRAPQEYANSAS 1163
Query: 807 ITQIRLSRNRRGRRRRRRKKK 827
+ ++++ R R R RR KK
Sbjct: 1164 LPHVQVAL-RMNRERNRRYKK 1183
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/182 (45%), Positives = 109/182 (59%), Gaps = 17/182 (9%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--T 269
R ++ +A+ED K PG V+LFG+ S CV VQNI+R +YLLPR L T
Sbjct: 358 LRFWYWEAWEDAQKLPGEVFLFGRT-----ADGKSICVRVQNINRVLYLLPRQYLLDPIT 412
Query: 270 KEP----VSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYS 322
KEP V+ A +Y EFD IAT+ K+ F+SRK+ K +A + G VP +YLEV Y
Sbjct: 413 KEPTKQKVTAADMYKEFDTHIATELKLDTFRSRKVSKNFANHAIGIDVPQTCDYLEVHYD 472
Query: 323 AKCPALPSDLSG--DTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
K PA P+ L+ D+ +H+FG T+ LE LL+RKIKGP WL+ P+ ISWCK
Sbjct: 473 GKKPA-PNVLNKKYDSIAHIFGANTNALERFLLDRKIKGPCWLQISGFNINPAPISWCKT 531
Query: 381 EV 382
+V
Sbjct: 532 DV 533
Score = 64.3 bits (155), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDK+ +FAA ++LK LKG K + E D+ VYE V E+EY +R ++ DWI+DDG
Sbjct: 15 IDKSGRFAALERLKSLKGTKNKCQVEEKVDD-VYEVVDEREYAKRANEKYGGDWIEDDGT 73
Query: 157 DGYVEDGREIF 167
GY EDGR+ F
Sbjct: 74 -GYAEDGRDFF 83
>gi|24648780|ref|NP_536736.2| DNA polymerase alpha 180kD [Drosophila melanogaster]
gi|45644974|sp|P26019.2|DPOLA_DROME RecName: Full=DNA polymerase alpha catalytic subunit
gi|23171902|gb|AAF55908.2| DNA polymerase alpha 180kD [Drosophila melanogaster]
Length = 1488
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 246/437 (56%), Positives = 321/437 (73%), Gaps = 24/437 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 759 SITKLISLTMQDNSYLLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 818
Query: 461 HEKSYVLPDKQ-----YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIIL 515
HEK+Y++PDK+ G + +G + +KKAAY+GGLVLEP +G Y+K+++L
Sbjct: 819 HEKNYIVPDKKPVSKRSGAGDTDATLSGADATMQTKKKAAYAGGLVLEPMRGLYEKYVLL 878
Query: 516 MDFNSLYPSIIQEYNICFTTI--PVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVE 572
MDFNSLYPSIIQEYNICFTT+ PV D+D + TL P+ + + GILP ++K+LVE
Sbjct: 879 MDFNSLYPSIIQEYNICFTTVQQPV----DADELPTL----PDSKTEPGILPLQLKRLVE 930
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
SR++VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KG
Sbjct: 931 SRKEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKG 990
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL NT+ LV+ +NY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQLELDI
Sbjct: 991 REILTNTQQLVQKMNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLELDI 1050
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DGV+ +LLLKKKKYAA+ +SK S G + QE KG+D+VRRDWSQLA GK V+ ++L
Sbjct: 1051 DGVFGCLLLLKKKKYAAIKLSKDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVL 1110
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKVCITQI 810
E+ L+++L +H ++KI+T + G VPL L ITKQLT+ P+ + +
Sbjct: 1111 SEK-----PLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHV 1165
Query: 811 RLSRNRRGRRRRRRKKK 827
+++ R R R RR KK
Sbjct: 1166 QVAL-RMNRERNRRYKK 1181
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 107/182 (58%), Gaps = 16/182 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R ++ +A+ED K PG V+LFG+ S C+ VQNI+R +YLLPR L
Sbjct: 362 LRFWYWEAYEDPVKMPGEVFLFGRT-----ADGKSVCLRVQNINRVLYLLPRQFLLDPIS 416
Query: 268 --KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYS 322
TK+ V++A +Y EFD ++A Q K+ F+SRK+ K +A + G VP +YLEV Y
Sbjct: 417 KEPTKQKVTVADIYKEFDSEVANQLKLEFFRSRKVTKSFAHHAIGIEVPQSCDYLEVHYD 476
Query: 323 AK--CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
K P L +D ++ +H+FG T+ LE LL+RKIKGP WL+ + P+ +SWC
Sbjct: 477 GKKPLPNLSADKKYNSIAHIFGATTNALERFLLDRKIKGPCWLQVTGFKVSPTPMSWCNT 536
Query: 381 EV 382
EV
Sbjct: 537 EV 538
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DK +FAA ++L+ LKG K K E ++VY+ V E+EY +R ++ DDWI++DG
Sbjct: 15 VDKNGRFAAMERLRQLKGTKNKCKVE-DQVDDVYDVVDEREYAKRAQEKYGDDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
GY ED R+ F+D+ E ++++ D +KK K + PN+K
Sbjct: 74 -GYAEDLRDFFEDEDEYSDGEEDRKDSKKK-KGVA-PNSK 110
>gi|189237191|ref|XP_967510.2| PREDICTED: similar to DNA polymerase alpha 180kD CG6349-PA [Tribolium
castaneum]
gi|270008175|gb|EFA04623.1| DNA polymerase alpha 180kD [Tribolium castaneum]
Length = 1406
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 258/440 (58%), Positives = 329/440 (74%), Gaps = 29/440 (6%)
Query: 387 MEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMG 446
++ RSK+ L+ L+ + TM +++++KIM LN++PLA+QIT + GNV+S+TLMG
Sbjct: 699 LKMFRSKEELLKLVSL------TMQDTAFVLKIMYSLNIIPLALQITTIAGNVMSKTLMG 752
Query: 447 GRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKK 506
GRSERNEFLLLHAF EK+Y++PDK GK K GE+T KKA YSGGLVL+PK
Sbjct: 753 GRSERNEFLLLHAFSEKNYIVPDKSSGK-KDFGEKTA-------NKKATYSGGLVLDPKI 804
Query: 507 GFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSE 566
GFYDKFI+LMDFNSLYPSIIQEYNICFTT+P + +D+ + LP+ + G+LP+E
Sbjct: 805 GFYDKFILLMDFNSLYPSIIQEYNICFTTMPPNLAEDNMV------LPDATLPAGVLPTE 858
Query: 567 IKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAA 626
IKKLVESRR VK LMK +LS D MQYDIRQ ALKLTANSMYGCLGF NSRF+A+ LAA
Sbjct: 859 IKKLVESRRAVKKLMKSADLSPDQRMQYDIRQMALKLTANSMYGCLGFANSRFYAKNLAA 918
Query: 627 LVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK 686
L+T KGREIL NTK +VE LN+EVIYGDTDSLMI+ N+ D+D V +IG +IK E NKLY+
Sbjct: 919 LITHKGREILTNTKEVVERLNFEVIYGDTDSLMINTNLVDFDQVAQIGTKIKQEINKLYR 978
Query: 687 QLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746
Q+ELDIDGV+KY+LLLKKKKYAA+++SK G++ E KG+D+VRRDWS+LA+EAGKF
Sbjct: 979 QVELDIDGVFKYLLLLKKKKYAAVTLSKDKEGRLKTDIEYKGLDIVRRDWSRLAAEAGKF 1038
Query: 747 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA----PEG 802
V++QIL +QS ++R NI H+ ++R DL G VPL+LL ITKQL+K PE
Sbjct: 1039 VLNQILSDQSS-----ENRFLNILTHLSQLREDLQEGKVPLSLLVITKQLSKNPDQYPED 1093
Query: 803 GKVCITQIRLSRNRRGRRRR 822
+ Q+ + N++G R
Sbjct: 1094 NTLPHVQVAIRYNKQGGHYR 1113
Score = 178 bits (451), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/277 (38%), Positives = 161/277 (58%), Gaps = 28/277 (10%)
Query: 131 EEVSEKEYT-ERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKN 189
EE++E + + E V + Q D DDD +E+ + PQ +EK D + N
Sbjct: 231 EEIAETQASCEEVAETQSDGCFDDDLDLSQLEESEAE-----QSKPQIEEKQDLWE---N 282
Query: 190 IQNPNAKDDSLPLATDH--------------ENKKVFRMFFLDAFEDIYKQPGTVYLFGK 235
I++ K+ S+ T+ ++K VFR F+ DA+ED + +PG V LFGK
Sbjct: 283 IESEMLKEWSVSQDTETTIDLQNSDIPLVKIDDKSVFRFFWWDAYEDPFIKPGVVVLFGK 342
Query: 236 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFK 295
+ + +H SC VI++NIDR+I+ LPR E K+K+PV+ VY+E +++ I +FK
Sbjct: 343 TYHTQTKTHVSCTVIIRNIDRRIFFLPRVEEEKSKKPVTSQDVYAEINELMKTKGIKNFK 402
Query: 296 SRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLER 355
+R + KKYAF+L VP S+Y+EVRY+A P + G TFS VFG+++S+LE LL+R
Sbjct: 403 ARPVTKKYAFDL-EVPSESDYVEVRYAATDPPIDKTTKGRTFSRVFGSESSYLEIFLLDR 461
Query: 356 KIKGPSWLEF--PEAEKFPSRISWCKYEVQCNQMEKI 390
KIKGP WL P E PS +WCK +V C+++ +
Sbjct: 462 KIKGPCWLNIANPIPESNPS--TWCKLQVNCDKLTDV 496
Score = 73.2 bits (178), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
D + K AF+K K LK G+++KYE ENVY+ V EKEYT++VL RQ+DDWI DD G
Sbjct: 16 DSSYKAKAFEKFKQLKS-GLRNKYEVEELENVYDTVDEKEYTKKVLDRQDDDWIVDDDGS 74
Query: 158 GYVEDGREIFDDDIE 172
GYVEDGR+IFDDD++
Sbjct: 75 GYVEDGRDIFDDDLD 89
>gi|194742070|ref|XP_001953530.1| GF17808 [Drosophila ananassae]
gi|190626567|gb|EDV42091.1| GF17808 [Drosophila ananassae]
Length = 1481
Score = 481 bits (1237), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/436 (57%), Positives = 326/436 (74%), Gaps = 24/436 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 755 SITKLISLTMQDNSYLLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 814
Query: 461 HEKSYVLPDKQYGKNKKEG---EETGEANKG-KGRKKAAYSGGLVLEPKKGFYDKFIILM 516
HEK+Y++PDK+ N++ G E T A+ RKKAAY+GGLVLEP +G Y+KF++LM
Sbjct: 815 HEKNYIVPDKK-ASNRRGGGDPENTIIADATLPVRKKAAYAGGLVLEPMRGLYEKFVLLM 873
Query: 517 DFNSLYPSIIQEYNICFTTI--PVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVES 573
DFNSLYPSIIQEYNICFTT+ PV D+D + TL PE +V+ GILP ++K+LVES
Sbjct: 874 DFNSLYPSIIQEYNICFTTVQQPV----DADELPTL----PESKVEAGILPLQLKRLVES 925
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R++VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KGR
Sbjct: 926 RKEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGR 985
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL NT+ +V+ +NY+V+YGDTDS+MI+ N+ DYD V+KIG +IK NK+YKQLELDID
Sbjct: 986 EILTNTQQMVQKMNYDVVYGDTDSIMINTNITDYDQVYKIGREIKQSVNKMYKQLELDID 1045
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
GV+ +LLLKKKKYAA+ +SK S G + QE KG+D+VRRDWSQLA GK V+ ++L
Sbjct: 1046 GVFACLLLLKKKKYAAVKLSKDSKGNLKREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLA 1105
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKVCITQIR 811
E+ L+++L +H ++KI+ ++ G VPL L ITKQLT+AP+ + ++
Sbjct: 1106 EK-----QLEEKLDAVHTQLEKIKQQINEGAVPLPLFVITKQLTRAPQEYANSASLPHVQ 1160
Query: 812 LSRNRRGRRRRRRKKK 827
++ R R R RR KK
Sbjct: 1161 VAL-RMNRERNRRYKK 1175
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 114/190 (60%), Gaps = 16/190 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R +F +A+ED K PG V+LFG+ S CV VQNI+R +YLLPR L
Sbjct: 358 LRFWFWEAWEDPTKLPGEVFLFGR-----TADGKSVCVRVQNINRVLYLLPRQYLLDPIS 412
Query: 268 --KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYS 322
TKE V++A +Y EFD ++AT+ K+ F+SRK+ K +A + G VP +YLEV Y
Sbjct: 413 KEPTKEKVTVADIYKEFDSEVATELKLDTFRSRKVSKNFAHHAIGIDVPQTCDYLEVHYD 472
Query: 323 AK--CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
K P L ++ ++ +HVFG+ T+ LE LL+RKIKGP WL+ + P+ +SWCK
Sbjct: 473 GKKPPPTLAANKKYNSIAHVFGSTTNALERFLLDRKIKGPCWLQVSGFKLSPAPMSWCKT 532
Query: 381 EVQCNQMEKI 390
EV ++ + +
Sbjct: 533 EVTVSEPKNV 542
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDK +FAA ++L+ LKG K + E D+ VYE V E+EY +R ++ DDWI+DDG
Sbjct: 15 IDKNGRFAAMERLRQLKGTKNKCQVEDQVDD-VYEVVDEREYAKRAQEKYGDDWIEDDGT 73
Query: 157 DGYVEDGREIFDDD 170
GY EDGR+ F+D+
Sbjct: 74 -GYAEDGRDFFEDE 86
>gi|195498574|ref|XP_002096581.1| GE24967 [Drosophila yakuba]
gi|194182682|gb|EDW96293.1| GE24967 [Drosophila yakuba]
Length = 1492
Score = 480 bits (1235), Expect = e-132, Method: Compositional matrix adjust.
Identities = 247/438 (56%), Positives = 322/438 (73%), Gaps = 25/438 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 762 SITKLISLTMQDNSYLLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 821
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKG------KGRKKAAYSGGLVLEPKKGFYDKFII 514
HEK+Y++PDK+ +K+ EA + +KKAAY+GGLVLEP +G Y+K+++
Sbjct: 822 HEKNYIVPDKKVPVSKRSAAGDAEATFSGADATLQSKKKAAYAGGLVLEPLRGLYEKYVL 881
Query: 515 LMDFNSLYPSIIQEYNICFTTI--PVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLV 571
LMDFNSLYPSIIQEYNICFTT+ PV D+D + TL P+ + + GILP ++K+LV
Sbjct: 882 LMDFNSLYPSIIQEYNICFTTVQQPV----DADELPTL----PDSKTEAGILPLQLKRLV 933
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
ESR++VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT K
Sbjct: 934 ESRKEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHK 993
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREIL +T+ LV+ LNY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQLELD
Sbjct: 994 GREILTSTQQLVQKLNYDVVYGDTDSLMINTNITDYDQVYKIGHSIKQSVNKLYKQLELD 1053
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
IDGV+ +LLLKKKKYAA+ +SK S G + QE KG+D+VRRDWSQLA GK V+ ++
Sbjct: 1054 IDGVFGCLLLLKKKKYAAVKLSKDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEV 1113
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKVCITQ 809
L E+ L+++L +H ++KI+T + G VPL L ITKQLT+ P+ +
Sbjct: 1114 LSEK-----PLEEKLDAVHAQLEKIKTQIAEGAVPLPLFVITKQLTRTPQEYANSASLPH 1168
Query: 810 IRLSRNRRGRRRRRRKKK 827
++++ R R R RR KK
Sbjct: 1169 VQVAL-RMNRERNRRYKK 1185
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/196 (39%), Positives = 113/196 (57%), Gaps = 20/196 (10%)
Query: 202 LATDHENK----KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 257
L TD E+ + R ++ +A+ED K PG V+LFG+ S C+ VQNI+R
Sbjct: 351 LTTDQESTISSDQQLRFWYWEAYEDPVKMPGEVFLFGRT-----ADGKSVCLRVQNINRV 405
Query: 258 IYLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG- 309
+YLLPR L TK+ V++A +Y EFD ++A Q K+ F+SRK+ K +A + G
Sbjct: 406 LYLLPRQFLLDPISKEPTKQKVTVADIYKEFDSEVANQLKLEFFRSRKVTKSFAHHAIGI 465
Query: 310 -VPDLSEYLEVRYSAK--CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFP 366
VP +YLEV Y K P L ++ ++ +H+FG T+ LE LL+RKIKGP WL+
Sbjct: 466 EVPQTCDYLEVHYDGKKPLPNLSANKKYNSIAHIFGATTNALERFLLDRKIKGPCWLQVT 525
Query: 367 EAEKFPSRISWCKYEV 382
+ P+ +SWC EV
Sbjct: 526 GFKVNPAPMSWCNIEV 541
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DK +FAA ++L+ LKG K + E ++VY+ V E+EY +R ++ DDWI++DG
Sbjct: 15 VDKNGRFAAMERLRQLKGTKNKCQVE-DQVDDVYDVVDEREYAKRAQEKYGDDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
GY ED R+ F+D+ E ++E+ D +KK K + PN+K
Sbjct: 74 -GYAEDLRDFFEDEDEYSDGEEERKDSKKK-KGVA-PNSK 110
>gi|195344386|ref|XP_002038769.1| GM10998 [Drosophila sechellia]
gi|194133790|gb|EDW55306.1| GM10998 [Drosophila sechellia]
Length = 1488
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 246/437 (56%), Positives = 320/437 (73%), Gaps = 24/437 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 759 SITKLISLTMQDNSYLLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 818
Query: 461 HEKSYVLPDKQ-----YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIIL 515
HEK+Y++PDK+ G + +G + +KKAAY+GGLVLEP +G Y+K+++L
Sbjct: 819 HEKNYIVPDKKPVSKRSGAGDTDATLSGADATMQTKKKAAYAGGLVLEPMRGLYEKYVLL 878
Query: 516 MDFNSLYPSIIQEYNICFTTI--PVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVE 572
MDFNSLYPSIIQEYNICFTT+ PV D+D + TL P+ + + GILP ++K+LVE
Sbjct: 879 MDFNSLYPSIIQEYNICFTTVQQPV----DADELPTL----PDSKTEPGILPLQLKRLVE 930
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
SR++VK LM +LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KG
Sbjct: 931 SRKEVKKLMAAHDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKG 990
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL NT+ LV+ LNY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQLELDI
Sbjct: 991 REILTNTQQLVQKLNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLELDI 1050
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DGV+ +LLLKKKKYAA+ +SK S G + QE KG+D+VRRDWSQLA GK V+ ++L
Sbjct: 1051 DGVFGCLLLLKKKKYAAVKLSKDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVL 1110
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKVCITQI 810
E+ L+++L +H ++KI+T + G VPL L ITKQLT+ P+ + +
Sbjct: 1111 SEK-----PLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHV 1165
Query: 811 RLSRNRRGRRRRRRKKK 827
+++ R R R RR KK
Sbjct: 1166 QVAL-RMNRERNRRYKK 1181
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 124/226 (54%), Gaps = 23/226 (10%)
Query: 175 PQKKEKHDKRKKNKNIQNPNAKDDSLP---LATDHENK----KVFRMFFLDAFEDIYKQP 227
P++ E D + N ++ DD L TD ++ + R ++ +A+ED K P
Sbjct: 318 PKESESEDISRLLNNWESICQMDDDFEKSVLTTDQDSTISSDQQLRFWYWEAYEDPVKMP 377
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK------TKEPVSIAQVYSE 281
G V+LFG+ S C+ VQNI+R +YLLPR L TK+ V++A +Y E
Sbjct: 378 GEVFLFGR-----TADGKSVCLRVQNINRVLYLLPRQFLLDPISKEITKQKVTVADIYKE 432
Query: 282 FD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYSAK--CPALPSDLSGDT 336
FD ++A Q K+ F+SRK+ K +A + G VP +YLEV Y K P L +D ++
Sbjct: 433 FDNEVANQLKLEFFRSRKVTKSFAHHAIGIEVPQSCDYLEVHYDGKKPLPNLSADKKYNS 492
Query: 337 FSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEV 382
+H+FG T+ LE LL+RKIKGP WL+ + P+ +SWC EV
Sbjct: 493 IAHIFGATTNALERFLLDRKIKGPCWLQVTGFKVSPTPMSWCNTEV 538
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DK +FAA ++L+ LKG K K E ++VY+ V E+EY +R ++ DDWI++DG
Sbjct: 15 VDKNGRFAAMERLRQLKGTKNKCKVE-DQVDDVYDVVDEREYAKRAQEKYGDDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
GY ED R+ F+D+ E ++++ D +KK K + PN+K
Sbjct: 74 -GYAEDLRDFFEDEDEYSDGEEDRKDSKKK-KGVA-PNSK 110
>gi|195396107|ref|XP_002056674.1| GJ11070 [Drosophila virilis]
gi|194143383|gb|EDW59786.1| GJ11070 [Drosophila virilis]
Length = 1481
Score = 477 bits (1228), Expect = e-131, Method: Compositional matrix adjust.
Identities = 243/437 (55%), Positives = 317/437 (72%), Gaps = 21/437 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+ + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNE+LLLHAF
Sbjct: 751 NVTKLISLTMQDASYMLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEYLLLHAF 810
Query: 461 HEKSYVLPDKQYGKNKKEGEE--------TGEANKGKGRKKAAYSGGLVLEPKKGFYDKF 512
HEK+Y++PDK + G + T A G RKKAAY+GGLVLEP +G Y+K+
Sbjct: 811 HEKNYIVPDKLPARRVAAGADPDATSQDTTVAAGAGAVRKKAAYAGGLVLEPIRGLYEKY 870
Query: 513 IILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVE 572
++LMDFNSLYPSIIQEYNICFTT+ Q D L LP+ + GILP ++++LVE
Sbjct: 871 VLLMDFNSLYPSIIQEYNICFTTVQ----QPHDAEQL-PTLPDSSAEPGILPLQLRRLVE 925
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
SRR+VK LM P+L+++L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KG
Sbjct: 926 SRREVKKLMAAPDLAAELHMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKG 985
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL+NT+ LV+ LNY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQLELDI
Sbjct: 986 REILVNTQQLVQKLNYDVVYGDTDSLMINTNITDYDQVYKIGHTIKQSVNKLYKQLELDI 1045
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DGV+ +LLLKKKKYAA+ +SK + G ++ QE KG+D+VRRDWSQLA GK V+ ++L
Sbjct: 1046 DGVFACLLLLKKKKYAAVKLSKNAKGVLLREQEHKGLDIVRRDWSQLAVMVGKAVLDEVL 1105
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKVCITQI 810
D L+D+L+ +H + +I+ + VPL L ITKQLT+AP+ + +
Sbjct: 1106 -----ADKPLEDKLEAVHAQLGRIKEQITQSAVPLPLYVITKQLTRAPQEYANSSSLPHV 1160
Query: 811 RLSRNRRGRRRRRRKKK 827
+++ R R R RR KK
Sbjct: 1161 QVAL-RMNRERNRRYKK 1176
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 91/230 (39%), Positives = 124/230 (53%), Gaps = 28/230 (12%)
Query: 175 PQKKEKHDKRKKNKNIQNPNAKDDSL-----------PLATDHENKKVFRMFFLDAFEDI 223
P K+E D K N ++ DD L +D + + R ++ +A+ED
Sbjct: 306 PPKQEADDMSKLLSNWESICQMDDDFERSALASEAETALGSDPGDVEQLRFWYWEAWEDA 365
Query: 224 YKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--TKEP----VSIAQ 277
K PG V+LFG+ S CV VQNI+R +YLLPR L TKEP V+ A
Sbjct: 366 IKLPGEVFLFGR-----TPDGKSICVRVQNINRVLYLLPRQYLLDPITKEPTKQKVTAAD 420
Query: 278 VYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYSAKCPALPS--DL 332
+Y EFD IAT+ K+ F+SRK+ K +A + G VP +YLEV Y K PA P+ +
Sbjct: 421 MYKEFDTHIATELKLDTFRSRKVSKSFANHAIGIEVPQTCDYLEVHYDGKKPA-PNMQNK 479
Query: 333 SGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEV 382
D+ +H+FG T+ LE LLERKIKGP WL+ P+ +SWCK +V
Sbjct: 480 KYDSIAHIFGASTNALERFLLERKIKGPCWLQISGFNVNPAPLSWCKTDV 529
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDKT +FAA ++L+ LKG K + E D+ VYE V E+EY +R ++ DWI+DDG
Sbjct: 15 IDKTGRFAALERLRGLKGTKNKCQVEEKVDD-VYEVVDEREYAKRANEKYGGDWIEDDGT 73
Query: 157 DGYVEDGREIFDDD 170
GY EDGR+ F+D+
Sbjct: 74 -GYAEDGRDFFEDE 86
>gi|17944210|gb|AAL48000.1| GM13460p [Drosophila melanogaster]
Length = 746
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/437 (56%), Positives = 321/437 (73%), Gaps = 24/437 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 17 SITKLISLTMQDNSYLLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 76
Query: 461 HEKSYVLPDKQ-----YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIIL 515
+EK+Y++PDK+ G + +G + +KKAAY+GGLVLEP +G Y+K+++L
Sbjct: 77 YEKNYIVPDKKPVSKRSGAGDTDATLSGADATMQTKKKAAYAGGLVLEPMRGLYEKYVLL 136
Query: 516 MDFNSLYPSIIQEYNICFTTI--PVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVE 572
MDFNSLYPSIIQEYNICFTT+ PV D+D + TL P+ + + GILP ++K+LVE
Sbjct: 137 MDFNSLYPSIIQEYNICFTTVQQPV----DADELPTL----PDSKTEPGILPLQLKRLVE 188
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
SR++VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KG
Sbjct: 189 SRKEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKG 248
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL NT+ LV+ +NY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQLELDI
Sbjct: 249 REILTNTQQLVQKMNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLELDI 308
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DGV+ +LLLKKKKYAA+ +SK S G + QE KG+D+VRRDWSQLA GK V+ ++L
Sbjct: 309 DGVFGCLLLLKKKKYAAIKLSKDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVL 368
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKVCITQI 810
E+ L+++L +H ++KI+T + G VPL L ITKQLT+ P+ + +
Sbjct: 369 SEK-----PLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHV 423
Query: 811 RLSRNRRGRRRRRRKKK 827
+++ R R R RR KK
Sbjct: 424 QVAL-RMNRERNRRYKK 439
>gi|383863019|ref|XP_003706980.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase alpha catalytic
subunit-like [Megachile rotundata]
Length = 1380
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 245/422 (58%), Positives = 312/422 (73%), Gaps = 16/422 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I IK T+ + YI+ I+ ELNVLPLA+QIT + GNV+SRTL GR+ERNE+LLLHAFH
Sbjct: 661 IDNLIKITLTEALYILSIVFELNVLPLALQITCIAGNVISRTLTAGRAERNEYLLLHAFH 720
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
K Y+ PDK +N K+G+ E GRKKAAY+GGLVLEPKKGFYDK I+LMDFNSL
Sbjct: 721 SKQYITPDK---RNMKKGK-NDEGIXQSGRKKAAYTGGLVLEPKKGFYDKLILLMDFNSL 776
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
YPSIIQEYN+CFTT+P DS+ +L PE + G++P+EI+KLVESR +VK LM
Sbjct: 777 YPSIIQEYNLCFTTVPGAAYADSEDLSL----PESHLKPGVIPTEIRKLVESRGEVKKLM 832
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K PN+S +L MQY+IRQ ALKLTANSMYGCLG + RF+A+ LAALVTAKGREIL +TKS
Sbjct: 833 KTPNISPELKMQYNIRQLALKLTANSMYGCLGASHCRFYAKGLAALVTAKGREILQHTKS 892
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
LVE LNYEVIYGDTDS+MI NV DYD VF +G +IK E NKLYK++ELDIDGV++Y+LL
Sbjct: 893 LVEKLNYEVIYGDTDSIMICTNVLDYDEVFSVGKKIKQEVNKLYKRVELDIDGVFRYLLL 952
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
L+KKKYAA++++KL NG++ +QE+KG+D+VRRDW QLA + GK ++ Q+L +D S
Sbjct: 953 LQKKKYAAVTMTKLPNGQIELTQELKGLDIVRRDWCQLACDVGKKILDQLL-----SDGS 1007
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE---GGKVCITQIRLSRNRRG 818
+DR++ I ++ + + V L+ L ITKQL+K P K Q+ L N+ G
Sbjct: 1008 DEDRIEQIFSLLQDVAASVRENQVSLSSLVITKQLSKNPNDYPDAKQAHVQVALRLNKEG 1067
Query: 819 RR 820
R
Sbjct: 1068 GR 1069
Score = 192 bits (488), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 127/199 (63%), Gaps = 9/199 (4%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL T+ + ++VFR ++ DA ED +KQPG VYLFGKVFV + SCCV V+N+ R+IY
Sbjct: 250 LPLVTNSDKEEVFRFYYWDACEDPFKQPGIVYLFGKVFVPSIKEYRSCCVTVKNVPRRIY 309
Query: 260 LLPRSEHLKT------KEPV--SIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP 311
LLPR ++KT +EP +I VY EF+Q A + I +F+ K+ K YAF G P
Sbjct: 310 LLPRL-YIKTSSEENGQEPQLNTIEDVYKEFNQFANKVGIKEFRCSKVTKYYAFEQEGTP 368
Query: 312 DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
SEYLEVRYSA CPA+P D SG + VFGT + LE LL+ER IKGP WL+
Sbjct: 369 AKSEYLEVRYSANCPAMPFDYSGPSIERVFGTTVNALELLLIERNIKGPCWLDIKCPLPT 428
Query: 372 PSRISWCKYEVQCNQMEKI 390
+ SWCK +V C ++E I
Sbjct: 429 GVQTSWCKIKVNCMKIENI 447
Score = 105 bits (263), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/133 (48%), Positives = 80/133 (60%), Gaps = 30/133 (22%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DKT + +A +KLK LKG KHKYE ENVYEEV EKEY++ V++RQ DDWI DDG
Sbjct: 14 VDKTGRLSALEKLKQLKGS--KHKYEIDELENVYEEVDEKEYSKTVIERQSDDWIVDDGN 71
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNK----------------NIQN-----PNA 195
GYVEDGREIFDDD++D E + +KNK NIQN P+
Sbjct: 72 SGYVEDGREIFDDDLDD-----ESIQEARKNKLAGPKKSKKDEKKKKGNIQNMIMNMPSK 126
Query: 196 KDDSLPLATDHEN 208
K + +A DH+N
Sbjct: 127 K--KVDIALDHDN 137
>gi|259790|gb|AAB24152.1| DNA polymerase-primase 180 kda subunit [Drosophila melanogaster]
Length = 1490
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 244/437 (55%), Positives = 319/437 (72%), Gaps = 24/437 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 761 SITKLISLTMQDNSYLLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 820
Query: 461 HEKSYVLPDKQ-----YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIIL 515
HEK+Y++PDK+ G + +G + +KKAAY+GGLVLEP +G Y+K+++L
Sbjct: 821 HEKNYIVPDKKPVSKRSGAGDTDATLSGADATMQTKKKAAYAGGLVLEPMRGLYEKYVLL 880
Query: 516 MDFNSLYPSIIQEYNICFTTI--PVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVE 572
MDFNSLYPSIIQEYNICFTT+ PV D+D + TL P+ + + GILP ++K+LVE
Sbjct: 881 MDFNSLYPSIIQEYNICFTTVQQPV----DADELPTL----PDSKTEPGILPLQLKRLVE 932
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
SR++VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KG
Sbjct: 933 SRKEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKG 992
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL NT+ LV+ +NY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQ ELDI
Sbjct: 993 REILTNTQQLVQKMNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQEELDI 1052
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DGV+ +LLLKKKKYAA+ +SK S G + QE KG+D+VRRDWSQLA GK V+ ++L
Sbjct: 1053 DGVFGCLLLLKKKKYAAIKLSKDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVL 1112
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKVCITQI 810
E+ L+++L +H ++KI+T + G VPL L ITKQLT+ P+ + +
Sbjct: 1113 SEK-----PLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHV 1167
Query: 811 RLSRNRRGRRRRRRKKK 827
+++ R R R R KK
Sbjct: 1168 QVAL-RMNRERNRLYKK 1183
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 107/182 (58%), Gaps = 16/182 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R ++ +A+ED K PG V+LFG+ S C+ VQNI+R +YLLPR L
Sbjct: 364 LRFWYWEAYEDPVKMPGEVFLFGRT-----ADGKSVCLRVQNINRVLYLLPRQFLLDPIS 418
Query: 268 --KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYS 322
TK+ V++A +Y EFD ++A Q K+ F+SRK+ K +A + G VP +YLEV Y
Sbjct: 419 KEPTKQKVTVADIYKEFDSEVANQLKLEFFRSRKVTKSFAHHAIGIEVPQSCDYLEVHYD 478
Query: 323 AK--CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
K P L +D ++ +H+FG T+ LE LL+RKIKGP WL+ + P+ +SWC
Sbjct: 479 GKKPLPNLSADKKYNSIAHIFGATTNALERFLLDRKIKGPCWLQVTGFKVSPTPMSWCNT 538
Query: 381 EV 382
EV
Sbjct: 539 EV 540
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DK +FAA ++L+ LKG K K E ++VY+ V E+EY +R ++ DDWI++DG
Sbjct: 15 VDKNGRFAAMERLRQLKGTKNKCKVE-DQVDDVYDVVDEREYAKRAQEKYGDDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
GY ED R+ F+D+ E ++++ D +KK K + PN+K
Sbjct: 74 -GYAEDLRDFFEDEDEYSDGEEDRKDLKKK-KGVA-PNSK 110
>gi|198454358|ref|XP_001359561.2| GA19530 [Drosophila pseudoobscura pseudoobscura]
gi|198132759|gb|EAL28710.2| GA19530 [Drosophila pseudoobscura pseudoobscura]
Length = 1474
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/435 (57%), Positives = 320/435 (73%), Gaps = 24/435 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 749 NITKLISLTMQDTSYMLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 808
Query: 461 HEKSYVLPDKQY----GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
HEK+Y++PDK+ G +G G+A RKKAAY+GGLVLEP +G Y+KF++LM
Sbjct: 809 HEKNYIVPDKKPQRGRGAADPDGTFGGDATALPVRKKAAYAGGLVLEPMRGLYEKFVLLM 868
Query: 517 DFNSLYPSIIQEYNICFTTI--PVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVES 573
DFNSLYPSIIQEYNICFTT+ PV D+D + TL P+ + + GILP ++K+LVES
Sbjct: 869 DFNSLYPSIIQEYNICFTTVQQPV----DADELPTL----PDTKTEAGILPLQLKRLVES 920
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RR+VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KGR
Sbjct: 921 RREVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGR 980
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL NT+ LV+ LNY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQLELDID
Sbjct: 981 EILTNTQQLVQKLNYDVVYGDTDSLMINTNITDYDQVYKIGHSIKQSVNKLYKQLELDID 1040
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
GV+ +LLLKKKKYAA+ +SK S G + QE KG+D+VRRDWSQLA GK V+ ++L
Sbjct: 1041 GVFSCLLLLKKKKYAAVKVSKTSKGGLKREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLA 1100
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQ 809
E+ L+++L +H +++I+ + VPL L ITKQLT+AP+ G + Q
Sbjct: 1101 EK-----QLEEKLDAVHAQLERIKDQIAQSAVPLPLFVITKQLTRAPQEYANSGSLPHVQ 1155
Query: 810 IRLSRNRRGRRRRRR 824
+ L NR RR ++
Sbjct: 1156 VALRMNRERNRRYKK 1170
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 137/264 (51%), Gaps = 30/264 (11%)
Query: 151 IDDDGGDGYVEDGREIFDDDIEDVPQ------KKEKHDKRKKNKNIQNPNAKDDSL---P 201
+DDD VE +E ++ P+ +E D K N ++ DD
Sbjct: 279 LDDDENQFEVEKPKEAIPTPVQTKPETASSSPPEEPEDISKLLSNWESICQMDDDFEKSA 338
Query: 202 LATDHENK----KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 257
LA + E + R ++ +A+ED K PG V+LFG+ S CV VQNI+R
Sbjct: 339 LAGEQETSISSDEQLRFWYWEAWEDPQKLPGEVFLFGR-----TADGKSVCVRVQNINRV 393
Query: 258 IYLLPRSEHLK--TKEP----VSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG- 309
+YLLPR L TKEP V++ +Y EFD +A K+ F+SRK+ K +A + G
Sbjct: 394 LYLLPRQHLLDPITKEPTKQKVTVVDIYKEFDSHVANNLKLDTFRSRKVSKNFANHAIGI 453
Query: 310 -VPDLSEYLEVRYSAKCPALP--SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFP 366
VP +YLEV Y K PA P ++ D+ +H+FG T+ LE LLERKIKGP WL+
Sbjct: 454 DVPQTCDYLEVHYDGKKPA-PNVANQKYDSIAHIFGAGTNALERFLLERKIKGPGWLQIS 512
Query: 367 EAEKFPSRISWCKYEVQCNQMEKI 390
+ P+ +SWCK EV ++ + +
Sbjct: 513 GFKVPPAPMSWCKMEVTVSEPKNV 536
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDK +FAA +KL+ LKG K + E D NVYE V E+EY +R ++ DDWI++DG
Sbjct: 15 IDKNGRFAALEKLRQLKGTKNKCQVEEDVD-NVYEVVDEREYAKRAQEKYGDDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIE 172
GY EDGR+ F+D+ E
Sbjct: 74 -GYAEDGRDFFEDEDE 88
>gi|62086805|dbj|BAD92009.1| DNA polymerase alpha catalytic subunit [Iguana iguana]
Length = 1441
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 247/411 (60%), Positives = 314/411 (76%), Gaps = 16/411 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + YI++IMC+LNVLPLA+QITN+ GNV+SRTLMGGR+ERNE+LLLHAF+
Sbjct: 710 LLYMVENTWTDAKYILQIMCDLNVLPLALQITNIAGNVMSRTLMGGRAERNEYLLLHAFY 769
Query: 462 EKSYVLPDKQ-YGKNKKEGEET----GEANKGK-GRKKAAYSGGLVLEPKKGFYDKFIIL 515
EK++++PDKQ + K +K+ EE G+ NK K GRKKAAYSGGLVLEPK GFYDKFI+L
Sbjct: 770 EKNFIVPDKQLFKKTQKQLEEDEDFEGDQNKSKTGRKKAAYSGGLVLEPKVGFYDKFILL 829
Query: 516 MDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKL 570
+DFNSLYPSIIQE+NICFTT+ + + LP+ +D GILP EI+KL
Sbjct: 830 LDFNSLYPSIIQEFNICFTTVHRVSSSLHKNTEDGEEEEIPELPDSSLDMGILPKEIRKL 889
Query: 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
VE RRQVK LMKQP+L+SDL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT
Sbjct: 890 VERRRQVKQLMKQPDLNSDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTF 949
Query: 631 KGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
KGREIL++TK +VE +N EVIYGDTDS+MI+ N+ + + VFK+GN+IKSE NKLYK LE+
Sbjct: 950 KGREILMHTKEMVEKMNLEVIYGDTDSIMINTNITNLEEVFKLGNKIKSEVNKLYKLLEI 1009
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
DIDG++K +LLLKKKKYAAL + +GK I QE+KG+D+VRRDW LA E G ++ISQ
Sbjct: 1010 DIDGIFKSLLLLKKKKYAALVVEPTGDGKYITKQELKGLDIVRRDWCDLAKETGNYIISQ 1069
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
IL +Q D ++NI + +I ++ NG VP+ EI K LTK P+
Sbjct: 1070 ILSDQFR-----DVIVENIQRRLIQIGENVVNGSVPIKQFEINKALTKDPQ 1115
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 134/190 (70%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL T + +++FR ++LDA+ED Y QPG V+LFGKV+++ S+ SCCV V+NI+R IY
Sbjct: 301 LPLITGADGQQIFRFYWLDAYEDQYNQPGVVFLFGKVWIESAKSYVSCCVTVKNIERTIY 360
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR + +T+ PV++ VY EF D +A ++KI+ +KS+K+EK YAF +P VP
Sbjct: 361 LLPRESRIDKCSGKETENPVTMMDVYQEFNDHVAEKFKIMKYKSKKVEKNYAFEIPDVPA 420
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
S+YLEVRYSA+ LP DL G+TFSHVFGT TS LE LL+ RKIKGP WLE +
Sbjct: 421 KSDYLEVRYSAEYSRLPQDLKGETFSHVFGTNTSSLELLLMNRKIKGPGWLEIKNPQLSS 480
Query: 373 SRISWCKYEV 382
+SWCK E+
Sbjct: 481 QAVSWCKVEL 490
Score = 60.5 bits (145), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 34/40 (85%)
Query: 128 NVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIF 167
+VY+E+ E++Y++ V +RQEDDWI DD G GYVEDGREIF
Sbjct: 3 SVYDEIDEEQYSKIVRERQEDDWIVDDDGVGYVEDGREIF 42
>gi|195153122|ref|XP_002017478.1| GL21505 [Drosophila persimilis]
gi|194112535|gb|EDW34578.1| GL21505 [Drosophila persimilis]
Length = 1474
Score = 474 bits (1219), Expect = e-130, Method: Compositional matrix adjust.
Identities = 249/435 (57%), Positives = 320/435 (73%), Gaps = 24/435 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 749 NITKLISLTMQDTSYMLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 808
Query: 461 HEKSYVLPDKQY----GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
HEK+Y++PDK+ G +G G+A RKKAAY+GGLVLEP +G Y+KF++LM
Sbjct: 809 HEKNYIVPDKKPQRGRGAADPDGTFGGDATALPVRKKAAYAGGLVLEPMRGLYEKFVLLM 868
Query: 517 DFNSLYPSIIQEYNICFTTI--PVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVES 573
DFNSLYPSIIQEYNICFTT+ PV D+D + TL P+ + + GILP ++K+LVES
Sbjct: 869 DFNSLYPSIIQEYNICFTTVQQPV----DADELPTL----PDTKTEAGILPLQLKRLVES 920
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RR+VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KGR
Sbjct: 921 RREVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGR 980
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL NT+ LV+ LNY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQLELDID
Sbjct: 981 EILTNTQQLVQKLNYDVVYGDTDSLMINTNITDYDQVYKIGHSIKQSVNKLYKQLELDID 1040
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
GV+ +LLLKKKKYAA+ +SK + G + QE KG+D+VRRDWSQLA GK V+ ++L
Sbjct: 1041 GVFSCLLLLKKKKYAAVKVSKTAKGVLKREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLA 1100
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQ 809
E+ L+++L +H +++I+ + VPL L ITKQLT+AP+ G + Q
Sbjct: 1101 EK-----QLEEKLDAVHAQLERIKDQIAQSAVPLPLFVITKQLTRAPQEYANSGSLPHVQ 1155
Query: 810 IRLSRNRRGRRRRRR 824
+ L NR RR ++
Sbjct: 1156 VALRMNRERNRRYKK 1170
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 138/268 (51%), Gaps = 30/268 (11%)
Query: 151 IDDDGGDGYVEDGREIFDDDIEDVPQ------KKEKHDKRKKNKNIQNPNAKDDSL---P 201
+DDD VE +E + P+ +E D K N ++ DD
Sbjct: 279 LDDDENQFEVEKPKEAIPTPVPTKPETASSSPPEEPEDISKLLSNWESICQMDDDFEKSA 338
Query: 202 LATDHENK----KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 257
LA + E + R ++ +A+ED K PG V+LFG+ S CV VQNI+R
Sbjct: 339 LAGEQETSISSDEQLRFWYWEAWEDPQKLPGEVFLFGR-----TADGKSVCVRVQNINRV 393
Query: 258 IYLLPRSEHLK--TKEP----VSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG- 309
+YLLPR L TKEP V++A +Y EFD +A K+ F+SRK+ K +A + G
Sbjct: 394 LYLLPRQHLLDPITKEPTKQKVTVADIYKEFDSHVANNLKLDTFRSRKVSKNFANHAIGI 453
Query: 310 -VPDLSEYLEVRYSAKCPALP--SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFP 366
VP +YLEV Y K PA P ++ D+ +H+FG T+ LE LLERKIKGP WL+
Sbjct: 454 DVPQTCDYLEVHYDGKKPA-PNVANQKYDSIAHIFGAGTNALERFLLERKIKGPGWLQIS 512
Query: 367 EAEKFPSRISWCKYEVQCNQMEKIRSKQ 394
+ P+ +SWCK EV ++ + + Q
Sbjct: 513 GFKIPPAPMSWCKMEVTVSEPKNVELVQ 540
Score = 70.1 bits (170), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDK +FAA +KL+ LKG K + E D NVYE V E+EY +R ++ DDWI++DG
Sbjct: 15 IDKNGRFAALEKLRQLKGTKNKCQVEEDVD-NVYEVVDEREYAKRAQEKYGDDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIE 172
GY EDGR+ F+D+ E
Sbjct: 74 -GYAEDGRDFFEDEDE 88
>gi|326679675|ref|XP_001922054.2| PREDICTED: DNA polymerase alpha catalytic subunit [Danio rerio]
Length = 1439
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/411 (58%), Positives = 314/411 (76%), Gaps = 17/411 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + + I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNE+LLLHAFH
Sbjct: 718 LLYLLELTWMDAKLILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFH 777
Query: 462 EKSYVLPDKQYGKNKKEG---EETGEANKGKG---RKKAAYSGGLVLEPKKGFYDKFIIL 515
E+ +++PDKQ+ K ++ +E G++ KGK RKKAAY+GGLVL+PK GFYDKFI+L
Sbjct: 778 ERDFIVPDKQFFKKAQQDLGEDEEGDSGKGKSNKTRKKAAYAGGLVLDPKVGFYDKFILL 837
Query: 516 MDFNSLYPSIIQEYNICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKL 570
+DFNSLYPSIIQE+NICFTT+ R + D + E LP+ ++ GILP EI+KL
Sbjct: 838 LDFNSLYPSIIQEFNICFTTVERGATNTRKKTEEDEDEIPE-LPDQSLEMGILPKEIRKL 896
Query: 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
VE RRQVK LMK+P+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT
Sbjct: 897 VERRRQVKQLMKEPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTH 956
Query: 631 KGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK LE+
Sbjct: 957 KGREILMHTKEMVQRMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEI 1016
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
DIDGV+K +LLLKKKKYAAL + +GK QE+KG+D+VRRDW LA E G +VI Q
Sbjct: 1017 DIDGVFKSLLLLKKKKYAALMVEPQGDGKYTTKQELKGLDIVRRDWCDLAKECGNYVIGQ 1076
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
IL +Q+ D ++NI +H+ +I + NG +PL + EI K LTK P+
Sbjct: 1077 ILSDQNR-----DTIIENIQKHLIEIGEKVANGNIPLNMFEIHKSLTKEPQ 1122
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 138/210 (65%), Gaps = 10/210 (4%)
Query: 182 DKRKKNKNIQNP---NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFV 238
+K ++ K I+ P LPL + VFR ++LDAFED Y QPG V+LFGKV++
Sbjct: 294 EKMEEGKPIETPVEVQVDSSQLPLVEGPDGDMVFRFYWLDAFEDQYNQPGVVFLFGKVWI 353
Query: 239 KENNSHSSCCVIVQNIDRKIYLLPRSEH---LKTKE---PVSIAQVYSEFDQIATQYKIL 292
+ +H SCCV V+NI+R +YLLPR EH L T E V + VY EF++I+ ++KI+
Sbjct: 354 ESAEAHVSCCVAVKNIERTMYLLPR-EHKVNLATGEKGVAVGMMDVYKEFNEISEKFKIM 412
Query: 293 DFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLL 352
FKS+ + K YAF +P +P SEYLEV+YSA+ P+LPSDL G TFSHVFGT TS LE+ L
Sbjct: 413 KFKSKPVTKNYAFEIPDIPSQSEYLEVKYSAEIPSLPSDLKGTTFSHVFGTNTSSLEHFL 472
Query: 353 LERKIKGPSWLEFPEAEKFPSRISWCKYEV 382
L RKI+GP WL+ + ISWCK E
Sbjct: 473 LNRKIRGPCWLDVTTPQLSNQPISWCKVEA 502
Score = 53.5 bits (127), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
+K + +A ++LK K +G K KYE ++Y+EV E++Y++ V +RQ+DDWI DD G
Sbjct: 22 EKVGRKSALEQLKRAK-KGEKVKYEVEEFTSIYDEVDEEQYSKIVRERQDDDWIIDDDGT 80
Query: 158 GYVEDGREIFDDDIED 173
GYVEDGREIFD++++D
Sbjct: 81 GYVEDGREIFDEELDD 96
>gi|194899426|ref|XP_001979261.1| GG14396 [Drosophila erecta]
gi|190650964|gb|EDV48219.1| GG14396 [Drosophila erecta]
Length = 1488
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 244/437 (55%), Positives = 318/437 (72%), Gaps = 24/437 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++M ELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 759 SITKLISLTMQDNSYLLRLMSELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 818
Query: 461 HEKSYVLPDKQ-----YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIIL 515
HEK+Y++PDK+ E +G + +KKAAY+GGLVLEP +G Y+K+++L
Sbjct: 819 HEKNYIVPDKKPVSKRSAAGDSEATLSGADATLQTKKKAAYAGGLVLEPMRGLYEKYVLL 878
Query: 516 MDFNSLYPSIIQEYNICFTTI--PVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVE 572
MDFNSLYPSIIQEYNICFTT+ PV D+D + TL P+ + + GILP ++K+LVE
Sbjct: 879 MDFNSLYPSIIQEYNICFTTVQQPV----DADELPTL----PDSKTEAGILPLQLKRLVE 930
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
SR++VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KG
Sbjct: 931 SRKEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKG 990
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL +T+ LV+ LNY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQLELDI
Sbjct: 991 REILTSTQQLVQKLNYDVVYGDTDSLMINTNITDYDQVYKIGHSIKQSVNKLYKQLELDI 1050
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DGV+ +LLLKKKKYAA+ +SK S G + QE KG+D+VRRDWSQLA GK V+ ++L
Sbjct: 1051 DGVFGCLLLLKKKKYAAVKLSKDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVL 1110
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKVCITQI 810
E+ L+++L +H ++KI+ + G VPL L ITKQLT+ P+ + +
Sbjct: 1111 SEK-----PLEEKLDAVHAQLEKIKNQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHV 1165
Query: 811 RLSRNRRGRRRRRRKKK 827
+++ R R R RR KK
Sbjct: 1166 QVAL-RMNRERNRRYKK 1181
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 83/226 (36%), Positives = 124/226 (54%), Gaps = 23/226 (10%)
Query: 175 PQKKEKHDKRKKNKNIQNPNAKDDSLP---LATDHENK----KVFRMFFLDAFEDIYKQP 227
P++ E D + N ++ DD L T+ E+ + R ++ +A+ED K P
Sbjct: 318 PKESESEDISRLLNNWESICQMDDDFEKSVLTTEQESTISSDQQLRFWYWEAYEDPVKMP 377
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSE 281
G V+LFG+ S C+ VQNI+R +YLLPR L TK+ V++A +Y E
Sbjct: 378 GEVFLFGRT-----ADGKSVCLRVQNINRVLYLLPRQFLLDPISKEPTKQKVTVADIYKE 432
Query: 282 FD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYSAK--CPALPSDLSGDT 336
FD ++A Q K+ F+SRK+ K +A + G VP +YLEV Y K P L ++ ++
Sbjct: 433 FDSEVANQLKLEFFRSRKVTKSFAHHSIGIEVPQTCDYLEVHYDGKKPLPNLSANKKYNS 492
Query: 337 FSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEV 382
+H+FG T+ LE LL+RKIKGP WL+ + P+ +SWC EV
Sbjct: 493 IAHIFGATTNALERFLLDRKIKGPCWLQVTGFKVNPAPMSWCNTEV 538
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 4/100 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DK +FAA ++L+ LKG K + E ++VY+ V E+EY +R ++ DDWI++DG
Sbjct: 15 VDKNGRFAAMERLRQLKGTKNKCQVE-DQVDDVYDVVDEREYAKRAQEKYGDDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
GY ED R+ F+D ED E K K K PN+K
Sbjct: 74 -GYAEDLRDFFED--EDEYSDGEADRKHSKKKKGVAPNSK 110
>gi|49618933|gb|AAT68051.1| DNA polymerase alpha [Danio rerio]
Length = 1389
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/411 (58%), Positives = 314/411 (76%), Gaps = 17/411 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + + I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNE+LLLHAFH
Sbjct: 718 LLYLLELTWMDAKLILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFH 777
Query: 462 EKSYVLPDKQYGKNKKEG---EETGEANKGKG---RKKAAYSGGLVLEPKKGFYDKFIIL 515
E+ +++PDKQ+ K ++ +E G++ KGK RKKAAY+GGLVL+PK GFYDKFI+L
Sbjct: 778 ERDFIVPDKQFFKKAQQDLGEDEEGDSGKGKSNKTRKKAAYAGGLVLDPKVGFYDKFILL 837
Query: 516 MDFNSLYPSIIQEYNICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKL 570
+DFNSLYPSIIQE+NICFTT+ R + D + E LP+ ++ GILP EI+KL
Sbjct: 838 LDFNSLYPSIIQEFNICFTTVERGATNTRKKTEEDEDEIPE-LPDQSLEMGILPKEIRKL 896
Query: 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
VE RRQVK LMK+P+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT
Sbjct: 897 VERRRQVKQLMKEPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTH 956
Query: 631 KGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK LE+
Sbjct: 957 KGREILMHTKEMVQRMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEI 1016
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
DIDGV+K +LLLKKKKYAAL + +GK QE+KG+D+VRRDW LA E G +VI Q
Sbjct: 1017 DIDGVFKSLLLLKKKKYAALMVEPQGDGKYTTKQELKGLDIVRRDWCDLAKECGNYVIGQ 1076
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
IL +Q+ D ++NI +H+ +I + NG +PL + EI K LTK P+
Sbjct: 1077 ILSDQNR-----DTIIENIQKHLIEIGEKVANGNIPLNMFEIHKSLTKEPQ 1122
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 138/210 (65%), Gaps = 10/210 (4%)
Query: 182 DKRKKNKNIQNP---NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFV 238
+K ++ K I+ P LPL + VFR ++LDAFED Y QPG V+LFGKV++
Sbjct: 293 EKMEEGKPIETPVEVQVDSSQLPLVEGPDGDMVFRFYWLDAFEDQYNQPGVVFLFGKVWI 352
Query: 239 KENNSHSSCCVIVQNIDRKIYLLPRSEH---LKTKE---PVSIAQVYSEFDQIATQYKIL 292
+ +H SCCV V+NI+R +YLLPR EH L T E V + VY EF++I+ ++KI+
Sbjct: 353 ESAEAHVSCCVAVKNIERTMYLLPR-EHKVNLATGEKGVAVGMMDVYKEFNEISEKFKIM 411
Query: 293 DFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLL 352
FKS+ + K YAF +P +P SEYLEV+YSA+ P+LPSDL G TFSHVFGT TS LE+ L
Sbjct: 412 KFKSKPVTKNYAFEIPDIPSQSEYLEVKYSAEIPSLPSDLKGTTFSHVFGTNTSSLEHFL 471
Query: 353 LERKIKGPSWLEFPEAEKFPSRISWCKYEV 382
L RKI+GP WL+ + ISWCK E
Sbjct: 472 LNRKIRGPCWLDVTTPQLSNQPISWCKVEA 501
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
+K + +A ++LK K +G K KYE ++Y+EV E++Y++ V +RQ+DDWI DD G
Sbjct: 21 EKVGRKSALEQLKRAK-KGEKVKYEVEEFTSIYDEVDEEQYSKIVRERQDDDWIIDDDGT 79
Query: 158 GYVEDGREIFDDDIED 173
GYVEDGREIFD++++D
Sbjct: 80 GYVEDGREIFDEELDD 95
>gi|390353239|ref|XP_003728068.1| PREDICTED: DNA polymerase alpha catalytic subunit-like isoform 1
[Strongylocentrotus purpuratus]
Length = 1480
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/405 (56%), Positives = 307/405 (75%), Gaps = 17/405 (4%)
Query: 405 FIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS 464
++ T + +I+++MCELNV+PL++Q+T +CGNV+SRTLMGGRSERNE LLLHAF+EK+
Sbjct: 771 LVEMTWKDAFFILRLMCELNVIPLSLQLTTICGNVMSRTLMGGRSERNEHLLLHAFNEKN 830
Query: 465 YVLPDKQYGKNKKEGEETGEANKGK---GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
++ PDK+Y K + G+ + K + K +Y+GGLVL+PK GFYDKFI+L+DFNSL
Sbjct: 831 FLCPDKEYKKKTQAVNMDGDDEQEKPTRSKNKPSYAGGLVLDPKVGFYDKFILLLDFNSL 890
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITT--LCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
YPSIIQEYNICFTT+ V+ D D + +P+ + GILP+EI+KLVE RRQVK
Sbjct: 891 YPSIIQEYNICFTTV-VQTPSDKDGSNDDWMPEVPDSDLTDGILPTEIRKLVERRRQVKG 949
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMKQP+L D+ +QYDIRQKALKLTANSMYGCLGF +SRF+A+PLAALVT+KGREIL++T
Sbjct: 950 LMKQPDLHPDIRLQYDIRQKALKLTANSMYGCLGFSHSRFYAKPLAALVTSKGREILMHT 1009
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K LV+ +N +VIYGDTDS+MI+ N D+D+VFK+GN++K+E NKLY+ LE+DIDGV++ M
Sbjct: 1010 KELVQKMNLDVIYGDTDSIMINTNSTDHDTVFKLGNRVKTEVNKLYRLLEIDIDGVFQSM 1069
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LLLKKKKYAA+++ +L +G + S+E+KG+D+VRRDW LA + G + I QIL
Sbjct: 1070 LLLKKKKYAAITVERLPDGTLKTSKEMKGLDIVRRDWCDLAKKVGSYAIDQIL------- 1122
Query: 760 YSLDDR---LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S D R + NIH H+ ++ + G +PL EI K LTKAP+
Sbjct: 1123 -SADSREVIVDNIHSHLVELGEKVAAGTIPLDQYEINKGLTKAPQ 1166
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 167/278 (60%), Gaps = 45/278 (16%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 258
SLPL T+ E +KV RM++LDA+ED YKQPGT++LFGKV+++E +H SCCV V+NI+RK+
Sbjct: 355 SLPLTTNEEGEKVLRMYWLDAYEDPYKQPGTIFLFGKVYIEEAKTHVSCCVAVKNIERKV 414
Query: 259 YLLPRSEH------LKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
YLLPR + + T + V++ VY EFD + T+YKI+ F+S+K+ K+Y F +P
Sbjct: 415 YLLPREKKRNLKKGVDTDKDVTMMDVYQEFDAMTTKYKIMKFRSKKVTKQYCFERSDIPA 474
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE--FPEAEK 370
SEYLE+RY A P LPSDL G+TFSH+FG TS +E LLL+RK+KGPSWL+ FP+
Sbjct: 475 ESEYLEIRYGADVPQLPSDLQGETFSHIFGANTSCMELLLLDRKLKGPSWLDIKFPQ--- 531
Query: 371 FPSR-ISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLA 429
P++ ISWCK E T + I ++ +L PL
Sbjct: 532 LPTQAISWCKVE---------------------------TYITKPDFITVIKDLTPPPLV 564
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+ N+ RT++ ++ RNE + + A + L
Sbjct: 565 VMTINL------RTVLNQKTHRNEIVAVAALVHHKFPL 596
Score = 46.6 bits (109), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 50/78 (64%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDG 158
K + +A +KLK+ K G + E N+Y+ V E EY++ V RQ+DDWI DD G G
Sbjct: 28 KAGRLSALEKLKNAKKGGKRFYDEDEDMSNIYDVVDEDEYSKIVRDRQDDDWIVDDDGGG 87
Query: 159 YVEDGREIFDDDIEDVPQ 176
YVEDGREIFD+D+ P+
Sbjct: 88 YVEDGREIFDEDLRADPE 105
>gi|390353241|ref|XP_003728069.1| PREDICTED: DNA polymerase alpha catalytic subunit-like isoform 2
[Strongylocentrotus purpuratus]
Length = 1480
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 229/405 (56%), Positives = 307/405 (75%), Gaps = 17/405 (4%)
Query: 405 FIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS 464
++ T + +I+++MCELNV+PL++Q+T +CGNV+SRTLMGGRSERNE LLLHAF+EK+
Sbjct: 771 LVEMTWKDAFFILRLMCELNVIPLSLQLTTICGNVMSRTLMGGRSERNEHLLLHAFNEKN 830
Query: 465 YVLPDKQYGKNKKEGEETGEANKGK---GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
++ PDK+Y K + G+ + K + K +Y+GGLVL+PK GFYDKFI+L+DFNSL
Sbjct: 831 FLCPDKEYKKKTQAVNMDGDDEQEKPTRSKNKPSYAGGLVLDPKVGFYDKFILLLDFNSL 890
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITT--LCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
YPSIIQEYNICFTT+ V+ D D + +P+ + GILP+EI+KLVE RRQVK
Sbjct: 891 YPSIIQEYNICFTTV-VQTPSDKDGSNDDWMPEVPDSDLTDGILPTEIRKLVERRRQVKG 949
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMKQP+L D+ +QYDIRQKALKLTANSMYGCLGF +SRF+A+PLAALVT+KGREIL++T
Sbjct: 950 LMKQPDLHPDIRLQYDIRQKALKLTANSMYGCLGFSHSRFYAKPLAALVTSKGREILMHT 1009
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K LV+ +N +VIYGDTDS+MI+ N D+D+VFK+GN++K+E NKLY+ LE+DIDGV++ M
Sbjct: 1010 KELVQKMNLDVIYGDTDSIMINTNSTDHDTVFKLGNRVKTEVNKLYRLLEIDIDGVFQSM 1069
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LLLKKKKYAA+++ +L +G + S+E+KG+D+VRRDW LA + G + I QIL
Sbjct: 1070 LLLKKKKYAAITVERLPDGTLKTSKEMKGLDIVRRDWCDLAKKVGSYAIDQIL------- 1122
Query: 760 YSLDDR---LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S D R + NIH H+ ++ + G +PL EI K LTKAP+
Sbjct: 1123 -SADSREVIVDNIHSHLVELGEKVAAGTIPLDQYEINKGLTKAPQ 1166
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 167/278 (60%), Gaps = 45/278 (16%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 258
SLPL T+ E +KV RM++LDA+ED YKQPGT++LFGKV+++E +H SCCV V+NI+RK+
Sbjct: 355 SLPLTTNEEGEKVLRMYWLDAYEDPYKQPGTIFLFGKVYIEEAKTHVSCCVAVKNIERKV 414
Query: 259 YLLPRSEH------LKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
YLLPR + + T + V++ VY EFD + T+YKI+ F+S+K+ K+Y F +P
Sbjct: 415 YLLPREKKRNLKKGVDTDKDVTMMDVYQEFDAMTTKYKIMKFRSKKVTKQYCFERSDIPA 474
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE--FPEAEK 370
SEYLE+RY A P LPSDL G+TFSH+FG TS +E LLL+RK+KGPSWL+ FP+
Sbjct: 475 ESEYLEIRYGADVPQLPSDLQGETFSHIFGANTSCMELLLLDRKLKGPSWLDIKFPQ--- 531
Query: 371 FPSR-ISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLA 429
P++ ISWCK E T + I ++ +L PL
Sbjct: 532 LPTQAISWCKVE---------------------------TYITKPDFITVIKDLTPPPLV 564
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+ N+ RT++ ++ RNE + + A + L
Sbjct: 565 VMTINL------RTVLNQKTHRNEIVAVAALVHHKFPL 596
Score = 46.6 bits (109), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 50/78 (64%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDG 158
K + +A +KLK+ K G + E N+Y+ V E EY++ V RQ+DDWI DD G G
Sbjct: 28 KAGRLSALEKLKNAKKGGKRFYDEDEDMSNIYDVVDEDEYSKIVRDRQDDDWIVDDDGGG 87
Query: 159 YVEDGREIFDDDIEDVPQ 176
YVEDGREIFD+D+ P+
Sbjct: 88 YVEDGREIFDEDLRADPE 105
>gi|171846445|gb|AAI61721.1| LOC398200 protein [Xenopus laevis]
Length = 1458
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/410 (58%), Positives = 311/410 (75%), Gaps = 13/410 (3%)
Query: 400 IGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHA 459
+ ++ ++ T + + +I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNE+LLLHA
Sbjct: 736 VHLLYMLENTWIDAKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHA 795
Query: 460 FHEKSYVLPDKQYGKNKKE-----GEETG-EANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
F E ++++PDK K ++ ++ G + NK K RKKAAY+GGLVLEPK GFYDKFI
Sbjct: 796 FTENNFIVPDKPVFKKMQQTTVEDNDDMGTDQNKNKSRKKAAYAGGLVLEPKVGFYDKFI 855
Query: 514 ILMDFNSLYPSIIQEYNICFTTIP--VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+L+DFNSLYPSIIQEYNICFTT+ Q + LP ++ GILP EI+KLV
Sbjct: 856 LLLDFNSLYPSIIQEYNICFTTVHREAPSTQKGEDQDEIPELPHSDLEMGILPREIRKLV 915
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
E RR VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT +
Sbjct: 916 ERRRHVKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQ 975
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREILL+TK +V+ +N EVIYGDTDS+MI+ N N+ + VFK+GN++KSE NK YK LE+D
Sbjct: 976 GREILLHTKEMVQKMNLEVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKSYKLLEID 1035
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
IDG++K +LLLKKKKYAAL++ +GK + QE+KG+D+VRRDW +LA +AG +VISQI
Sbjct: 1036 IDGIFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAGNYVISQI 1095
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +Q D ++NI + + +I ++ NG VP+T EI K LTK P+
Sbjct: 1096 LSDQPR-----DSIVENIQKKLTEIGENVTNGTVPITQYEINKALTKDPQ 1140
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 104/198 (52%), Positives = 137/198 (69%), Gaps = 7/198 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL T + +VFR ++LDA+ED Y QPG VYLFGKV+++ +++ SCCV V+NI+R +Y
Sbjct: 329 LPLVTGADGSQVFRFYWLDAYEDQYSQPGVVYLFGKVWIESADAYVSCCVSVKNIERTVY 388
Query: 260 LLPRSEHLK------TKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR ++ T PVS+ VY EF++ +A +YKI+ FKS+K++K YAF +P VP
Sbjct: 389 LLPRENRVQLSTGKDTGVPVSMMHVYQEFNEAVAEKYKIMKFKSKKVDKDYAFEIPDVPA 448
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA P LP DL G+TFSHVFGT TS LE LL RKIKGPSWLE +
Sbjct: 449 SSEYLEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSWLEIKSPQLSS 508
Query: 373 SRISWCKYEVQCNQMEKI 390
+SWCK E + +++
Sbjct: 509 QPMSWCKVEAVVTRPDQV 526
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
+K+ + A ++LK K G K KYE ++YEEV E EY++ V RQ+DDWI DD G
Sbjct: 18 EKSGRKEALERLKRAKA-GEKVKYEVEQVSSIYEEVDEAEYSKLVRDRQDDDWIVDDDGT 76
Query: 158 GYVEDGREIFDDDIED 173
GYVEDGREIFDDD+ED
Sbjct: 77 GYVEDGREIFDDDLED 92
>gi|321468910|gb|EFX79893.1| hypothetical protein DAPPUDRAFT_304346 [Daphnia pulex]
Length = 1439
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 248/443 (55%), Positives = 325/443 (73%), Gaps = 34/443 (7%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
++ I TM + +++M ELNVLPLA+QIT++ GN+LSRTL+GGRSERNE+LLLHAF
Sbjct: 713 NLLGMIAITMQDGANTLRLMYELNVLPLALQITSIAGNLLSRTLLGGRSERNEYLLLHAF 772
Query: 461 HEKSYVLPDKQYGKNKKEGEETGE------ANKGK-GRKKAAYSGGLVLEPKKGFYDKFI 513
HEK +++PDKQ K K+GE++ E AN+ K GR+K AY+GGLVL+PK+GFYDKF+
Sbjct: 773 HEKGFIVPDKQAFKKSKKGEDSDEDVSTENANRSKKGRRKPAYAGGLVLDPKRGFYDKFV 832
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITT--------LCEYLPEHQVDTGILPS 565
+LMDFNSLYPSIIQE+NICFTT+ D + T + LP+ + GILP+
Sbjct: 833 LLMDFNSLYPSIIQEFNICFTTV------DRQVVTKATEGEEEILPDLPDSTLPLGILPT 886
Query: 566 EIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLA 625
EI+KLV+SRR+VK L+ LS DLL+QYDIRQKALKLTANSMYGCLGF NSRF+A+PLA
Sbjct: 887 EIRKLVDSRREVKKLIND-KLSKDLLLQYDIRQKALKLTANSMYGCLGFSNSRFYAKPLA 945
Query: 626 ALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY 685
AL+T+KGREILL T+ LV +N +VIYGDTDSLMI N DYD V K+G +IK E NKLY
Sbjct: 946 ALITSKGREILLQTRDLVRKMNLDVIYGDTDSLMIDSNSVDYDQVMKVGLKIKQEVNKLY 1005
Query: 686 KQLELDIDGVYKYMLLLKKKKYAALSISKL---SNGKMICSQEIKGVDVVRRDWSQLASE 742
K LELDIDGV++ +LLLKKKKYAA++++++ + +M+ QE+KG+D+VRRDWSQLA+
Sbjct: 1006 KHLELDIDGVFQRLLLLKKKKYAAVTVTQVIRDNKKEMVTQQEVKGLDIVRRDWSQLATR 1065
Query: 743 AGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE- 801
AGK+ + QIL D S D+R+ I ++++ IR NG + L+LLEITKQLTK PE
Sbjct: 1066 AGKYALEQILG-----DLSADERIARIQQNLEDIRDGFQNGTIDLSLLEITKQLTKNPEN 1120
Query: 802 ---GGKVCITQIRLSRNRRGRRR 821
+ Q+ + N RG ++
Sbjct: 1121 YPDAKNLSHVQVAIRTNSRGGKK 1143
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 96/211 (45%), Positives = 139/211 (65%), Gaps = 8/211 (3%)
Query: 187 NKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSS 246
N+++ + + LPL + ++ RM++ DA+ED Y QPGTV+LFGK+F++ ++ S
Sbjct: 291 NQSVAVLDLGSNELPLTQGEDGEQFLRMYWFDAYEDPYMQPGTVFLFGKIFIESAKAYVS 350
Query: 247 CCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKI 299
CCV V+NI++ IY+LPR + T PV+ VY EF+ ++A +YKIL FKSR++
Sbjct: 351 CCVSVKNIEKHIYVLPRDTVVDQRTGQDTGTPVNFMDVYEEFNTRVADRYKILQFKSRRV 410
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKG 359
KKY F P +P SEYLEV+YSA+ +LP++L G TFSHVFG TS LEN LLE+++KG
Sbjct: 411 LKKYGFEPPSIPRESEYLEVKYSAE-HSLPTNLKGATFSHVFGANTSALENFLLEKRVKG 469
Query: 360 PSWLEFPEAEKFPSRISWCKYEVQCNQMEKI 390
P WL +K +SWCK E + M++I
Sbjct: 470 PCWLNIKNPQKANPHVSWCKVEAFVSNMDQI 500
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/70 (65%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
D+ K AAFQKLKDLKG K+K T +NVYEEV E+EY++RV +RQEDDWI DD G
Sbjct: 22 DREGKSAAFQKLKDLKG--TKNKVTLTEVDNVYEEVDEREYSKRVQRRQEDDWIIDDDGS 79
Query: 158 GYVEDGREIF 167
GYVEDGRE+F
Sbjct: 80 GYVEDGREVF 89
>gi|147903805|ref|NP_001082055.1| DNA polymerase alpha catalytic subunit [Xenopus laevis]
gi|45476976|sp|Q9DE46.1|DPOLA_XENLA RecName: Full=DNA polymerase alpha catalytic subunit; AltName:
Full=DNA polymerase alpha catalytic subunit p180
gi|11493738|gb|AAG35630.1|AF202992_1 DNA polymerase alpha [Xenopus laevis]
Length = 1458
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/410 (58%), Positives = 311/410 (75%), Gaps = 13/410 (3%)
Query: 400 IGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHA 459
+ ++ ++ T + + +I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNE+LLLHA
Sbjct: 736 VHLLYMLENTWIDAKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHA 795
Query: 460 FHEKSYVLPDKQYGKNKKE-----GEETG-EANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
F E ++++PDK K ++ ++ G + NK K RKKAAY+GGLVLEPK GFYDKFI
Sbjct: 796 FTENNFIVPDKPVFKKMQQTTVEDNDDMGTDQNKNKSRKKAAYAGGLVLEPKVGFYDKFI 855
Query: 514 ILMDFNSLYPSIIQEYNICFTTIP--VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+L+DFNSLYPSIIQEYNICFTT+ Q + LP ++ GILP EI+KLV
Sbjct: 856 LLLDFNSLYPSIIQEYNICFTTVHREAPSTQKGEDQDEIPELPHSDLEMGILPREIRKLV 915
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
E RR VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT +
Sbjct: 916 ERRRHVKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQ 975
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREILL+TK +V+ +N EVIYGDTDS+MI+ N N+ + VFK+GN++KSE NK YK LE+D
Sbjct: 976 GREILLHTKEMVQKMNLEVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKSYKLLEID 1035
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
IDG++K +LLLKKKKYAAL++ +GK + QE+KG+D+VRRDW +LA +AG +VISQI
Sbjct: 1036 IDGIFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAGNYVISQI 1095
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +Q D ++NI + + +I ++ NG VP+T EI K LTK P+
Sbjct: 1096 LSDQPR-----DSIVENIQKKLTEIGENVTNGTVPITQYEINKALTKDPQ 1140
Score = 220 bits (560), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 104/198 (52%), Positives = 137/198 (69%), Gaps = 7/198 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL T + +VFR ++LDA+ED Y QPG VYLFGKV+++ +++ SCCV V+NI+R +Y
Sbjct: 329 LPLVTGADGSQVFRFYWLDAYEDQYSQPGVVYLFGKVWIESADAYVSCCVSVKNIERTVY 388
Query: 260 LLPRSEHLK------TKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR ++ T PVS+ VY EF++ +A +YKI+ FKS+K++K YAF +P VP
Sbjct: 389 LLPRENRVQLSTGKDTGAPVSMMHVYQEFNEAVAEKYKIMKFKSKKVDKDYAFEIPDVPA 448
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA P LP DL G+TFSHVFGT TS LE LL RKIKGPSWLE +
Sbjct: 449 SSEYLEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSWLEIKSPQLSS 508
Query: 373 SRISWCKYEVQCNQMEKI 390
+SWCK E + +++
Sbjct: 509 QPMSWCKVEAVVTRPDQV 526
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
+K+ + A ++LK K G K KYE ++YEEV E EY++ V RQ+DDWI DD G
Sbjct: 18 EKSGRKEALERLKRAKA-GEKVKYEVEQVSSIYEEVDEAEYSKLVRDRQDDDWIVDDDGT 76
Query: 158 GYVEDGREIFDDDIED 173
GYVEDGREIFDDD+ED
Sbjct: 77 GYVEDGREIFDDDLED 92
>gi|213623734|gb|AAI70149.1| DNA polymerase alpha [Xenopus laevis]
gi|213626038|gb|AAI70147.1| DNA polymerase alpha [Xenopus laevis]
Length = 1458
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 239/410 (58%), Positives = 311/410 (75%), Gaps = 13/410 (3%)
Query: 400 IGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHA 459
+ ++ ++ T + + +I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNE+LLLHA
Sbjct: 736 VHLLYMLENTWIDAKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHA 795
Query: 460 FHEKSYVLPDKQYGKNKKE-----GEETG-EANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
F E ++++PDK K ++ ++ G + NK K RKKAAY+GGLVLEPK GFYDKFI
Sbjct: 796 FTENNFIVPDKPVFKKMQQTTVEDNDDMGTDQNKNKSRKKAAYAGGLVLEPKVGFYDKFI 855
Query: 514 ILMDFNSLYPSIIQEYNICFTTIP--VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+L+DFNSLYPSIIQEYNICFTT+ Q + LP ++ GILP EI+KLV
Sbjct: 856 LLLDFNSLYPSIIQEYNICFTTVHREAPSTQKGEDQDEIPELPHSDLEMGILPREIRKLV 915
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
E RR VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT +
Sbjct: 916 ERRRHVKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQ 975
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREILL+TK +V+ +N EVIYGDTDS+MI+ N N+ + VFK+GN++KSE NK YK LE+D
Sbjct: 976 GREILLHTKEMVQKMNLEVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKSYKLLEID 1035
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
IDG++K +LLLKKKKYAAL++ +GK + QE+KG+D+VRRDW +LA +AG +VISQI
Sbjct: 1036 IDGIFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAGNYVISQI 1095
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +Q D ++NI + + +I ++ NG VP+T EI K LTK P+
Sbjct: 1096 LSDQPR-----DSIVENIQKKLTEIGENVTNGTVPITQYEINKALTKDPQ 1140
Score = 219 bits (558), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 104/198 (52%), Positives = 137/198 (69%), Gaps = 7/198 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL T + +VFR ++LDA+ED Y QPG VYLFGKV+++ +++ SCCV V+NI+R +Y
Sbjct: 329 LPLVTGADGSQVFRFYWLDAYEDQYSQPGVVYLFGKVWIESADAYVSCCVSVKNIERTVY 388
Query: 260 LLPRSEHLK------TKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR ++ T PVS+ VY EF++ +A +YKI+ FKS+K++K YAF +P VP
Sbjct: 389 LLPRENRVQLSTGKDTGVPVSMMHVYQEFNEAVAEKYKIMKFKSKKVDKDYAFEIPDVPA 448
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA P LP DL G+TFSHVFGT TS LE LL RKIKGPSWLE +
Sbjct: 449 SSEYLEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSWLEIKSPQLSS 508
Query: 373 SRISWCKYEVQCNQMEKI 390
+SWCK E + +++
Sbjct: 509 QPMSWCKVEAVVTRPDQV 526
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
+K+ + A ++LK K G K KYE ++YEEV E EY++ V RQ+DDWI DD G
Sbjct: 18 EKSGRKEALERLKRAKA-GEKVKYEVEQVSSIYEEVDEAEYSKLVRDRQDDDWIVDDDGT 76
Query: 158 GYVEDGREIFDDDIED 173
GYVEDGREIFDDD+ED
Sbjct: 77 GYVEDGREIFDDDLED 92
>gi|301608173|ref|XP_002933658.1| PREDICTED: DNA polymerase alpha catalytic subunit [Xenopus (Silurana)
tropicalis]
Length = 1462
Score = 467 bits (1202), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/411 (58%), Positives = 310/411 (75%), Gaps = 18/411 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GNVLSRTLMGGRSERNE+LLLHAF
Sbjct: 741 LLYMLENTWTDAKFILQIMCELNVLPLALQITNIAGNVLSRTLMGGRSERNEYLLLHAFT 800
Query: 462 EKSYVLPDK-------QYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
E ++++PDK Q + +T + KGRKKAAY+GGLVLEPK GFYDKFI+
Sbjct: 801 ENNFIVPDKPVFKKIQQTTVEDDDNMDTDQNKNKKGRKKAAYAGGLVLEPKVGFYDKFIL 860
Query: 515 LMDFNSLYPSIIQEYNICFTTI----PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKL 570
L+DFNSLYPSIIQEYNICFTT+ P + D + E LP ++ GILP EI+KL
Sbjct: 861 LLDFNSLYPSIIQEYNICFTTVQREAPTSQ-KGEDQEEIPE-LPHSDLEMGILPREIRKL 918
Query: 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
VE RR VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT
Sbjct: 919 VERRRHVKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTH 978
Query: 631 KGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+GREILL+TK +V+ +N EVIYGDTDS+MI+ N N+ + VFK+GN++KSE NK YK LE+
Sbjct: 979 QGREILLHTKEMVQKMNLEVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEVNKSYKLLEI 1038
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
DIDG++K +LLLKKKKYAAL++ +GK + QE+KG+D+VRRDW +LA EAG +VISQ
Sbjct: 1039 DIDGIFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKEAGNYVISQ 1098
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
IL +Q D+ ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1099 ILSDQPR-----DNIVENIQKKLTEIGENVTNGTVPISQYEINKALTKDPQ 1144
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/190 (54%), Positives = 132/190 (69%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL T + +VF+ ++LDA+ED Y QPG VYLFGKV+++ ++ SCCV V+NI+R +Y
Sbjct: 332 LPLVTGADGSQVFKFYWLDAYEDQYSQPGVVYLFGKVWIETAEAYVSCCVSVKNIERTVY 391
Query: 260 LLPRSEHLK------TKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR ++ T PVS+ VY EF++ +A +YKI+ FKS+K+EK YAF +P VP
Sbjct: 392 LLPRENRVQLSTGKDTGVPVSMMNVYQEFNESVAEKYKIMKFKSKKVEKDYAFEIPDVPA 451
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA P LP DL G+TFSHVFGT TS LE LL RKIKGPSWLE +
Sbjct: 452 SSEYLEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSWLEIKSPQLSS 511
Query: 373 SRISWCKYEV 382
+SWCK E
Sbjct: 512 QPMSWCKVEA 521
Score = 59.7 bits (143), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
+K+ + A ++LK K G K KYE ++YEEV E++Y++ V RQ+DDWI DD G
Sbjct: 18 EKSGRKEALERLKRAKA-GEKVKYEVEEISSIYEEVDEEQYSKIVRDRQDDDWIVDDDGT 76
Query: 158 GYVEDGREIFDDDIED 173
GYVEDGREIFDDD+ED
Sbjct: 77 GYVEDGREIFDDDLED 92
>gi|260796197|ref|XP_002593091.1| hypothetical protein BRAFLDRAFT_120187 [Branchiostoma floridae]
gi|229278315|gb|EEN49102.1| hypothetical protein BRAFLDRAFT_120187 [Branchiostoma floridae]
Length = 1526
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/430 (57%), Positives = 316/430 (73%), Gaps = 32/430 (7%)
Query: 392 SKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSER 451
+ Q L+YLI + T + +S + IMCELNVLPLA+QITN+CGN+L RTLMGGRSER
Sbjct: 791 TSQKLLYLI------ETTWVDASLTLNIMCELNVLPLALQITNICGNLLGRTLMGGRSER 844
Query: 452 NEFLLLHAFHEKSYVLPDKQYGKNKKEGEET---------GEANKGKGRKKAAYSGGLVL 502
NE+LLLHAF EK +++PDK YGK + + KGR+K AY+GGLVL
Sbjct: 845 NEYLLLHAFQEKGFIVPDKTYGKKQAATHPVDVDADDDDQAKPTSKKGRRKPAYAGGLVL 904
Query: 503 EPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRMLQDSDITTLCEYLPEHQV 558
EPKKGFYDK+I+L+DFNSLYPSIIQEYNICFTTI P D++ L + LP+ +
Sbjct: 905 EPKKGFYDKYILLLDFNSLYPSIIQEYNICFTTISREVPQSQGGDAEEEQLPD-LPDADL 963
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSR 618
+ G+LP+EI+KLVE RRQVK LMKQP+L+ DL +QY+IRQ+ALKLTANSMYGCLGF SR
Sbjct: 964 EPGVLPTEIRKLVERRRQVKQLMKQPDLNPDLKLQYNIRQQALKLTANSMYGCLGFTYSR 1023
Query: 619 FFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIK 678
F+A+PLAALVT+KGREILL TK LV+ +N +VIYGDTDS+MI+ N ++D VFK+GN++K
Sbjct: 1024 FYAKPLAALVTSKGREILLKTKDLVQKMNLDVIYGDTDSIMINTNSTNWDDVFKLGNKVK 1083
Query: 679 SECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQ 738
SE NKLY+ LELDIDGV+K MLLLKKKKYAAL+ISK +G QE+KG+D+VRRDW
Sbjct: 1084 SEVNKLYRLLELDIDGVFKSMLLLKKKKYAALTISKNPDGSFSTGQELKGLDIVRRDWCN 1143
Query: 739 LASEAGK-------FVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 791
LA EAGK +VI QIL +Q D ++NIHE + ++ + +G +P+ + E
Sbjct: 1144 LAKEAGKTVAHFSSYVIGQILSDQPR-----DKIVENIHEKLTEVGEKVKSGDIPVQMYE 1198
Query: 792 ITKQLTKAPE 801
I K LTK P+
Sbjct: 1199 INKALTKNPQ 1208
Score = 202 bits (514), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 154/259 (59%), Gaps = 34/259 (13%)
Query: 158 GYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNP------------------------ 193
G++ + + ED Q K + ++ +K K + P
Sbjct: 313 GHMSEEAPKVKQEPEDQVQVKSEPEELRKIKQEKKPFEDQVISGSGWETIKGEMGSAESV 372
Query: 194 --NAKDD--SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCV 249
+ K D SLPL T+ E + V R +++DA+ED YKQPG VY+FGKV+++ +H SCCV
Sbjct: 373 VTDVKVDSSSLPLVTNQEGESVLRFYWIDAYEDQYKQPGVVYMFGKVWIESARAHVSCCV 432
Query: 250 IVQNIDRKIYLLPRSEHL-----KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKY 303
+V+NI+R I+LLPR L T PV+I VY EFD+ I++++KI+ F SRK+ K+Y
Sbjct: 433 VVRNIERSIFLLPRETRLFKNGDDTGVPVTIMDVYQEFDEKISSKHKIMKFNSRKVTKQY 492
Query: 304 AFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWL 363
AF VP S+YLEVRYS+ PALP+DL G+TFSHVFGT TS E LLER+IKGP WL
Sbjct: 493 AFEKLEVPVESDYLEVRYSSDLPALPADLKGETFSHVFGTNTSSTELFLLERRIKGPCWL 552
Query: 364 EFPEAEKFPSRISWCKYEV 382
+ +K ISWCK E
Sbjct: 553 DIKLPQKPNQPISWCKVEA 571
Score = 79.0 bits (193), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
DKT + AA + +G K KYE ENVYEEV+E EY++ V RQEDDWI DD G
Sbjct: 24 DKTGRLAA-LEKLKKVKKGEKVKYEVDELENVYEEVNEDEYSDVVRTRQEDDWIIDDDGS 82
Query: 158 GYVEDGREIFDDDI 171
GYVEDGREIFDDDI
Sbjct: 83 GYVEDGREIFDDDI 96
>gi|354492237|ref|XP_003508256.1| PREDICTED: DNA polymerase alpha catalytic subunit isoform 2
[Cricetulus griseus]
Length = 1462
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/400 (61%), Positives = 310/400 (77%), Gaps = 18/400 (4%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK 474
+I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ +
Sbjct: 751 FILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR 810
Query: 475 --NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527
+K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQ
Sbjct: 811 KPQQKLGDEDEEVDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQ 870
Query: 528 EYNICFTTIPVRMLQDSDITTLCEY------LPEHQVDTGILPSEIKKLVESRRQVKALM 581
E+NICFTT+ L+ + TT E LP+ +D GILP EI+KLVE R+QVK LM
Sbjct: 871 EFNICFTTVQRVALEVQNSTTEDEEQEQIPELPDPNLDMGILPREIRKLVERRKQVKQLM 930
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
KQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK
Sbjct: 931 KQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKE 990
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
+V+ +N EVIYGDTDS+MI+ N + D VFK+GN++K+E NKLYK LE+DIDGV+K +LL
Sbjct: 991 MVQKMNLEVIYGDTDSIMINTNSTNLDEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLL 1050
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
LKKKKYAAL + S+G I QE+KG+D+VRRDW LA + G FVI QIL +QS
Sbjct: 1051 LKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR---- 1106
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + + +I ++ NG +P++ EI K LTK P+
Sbjct: 1107 -DTIVENIQKRLIEIGENVLNGSIPVSQFEINKALTKDPQ 1145
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 102/199 (51%), Positives = 134/199 (67%), Gaps = 7/199 (3%)
Query: 190 IQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCV 249
+Q LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+V+ +H SCCV
Sbjct: 319 VQEVQVDSTHLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWVESAQTHVSCCV 378
Query: 250 IVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKK 302
+V+NI+R +Y LPR + +T PV++ VY EFD IA +YKI+ FKS+ +EK
Sbjct: 379 MVKNIERTLYFLPREMKIDLNTGKETTTPVTMMDVYEEFDSTIAAKYKIMKFKSKTVEKN 438
Query: 303 YAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSW 362
YAF +P VP+ SEYLEVRYSA+ P LP L G+TFSHVFGT TS LE L+ RKIKGP W
Sbjct: 439 YAFEIPDVPEKSEYLEVRYSAEMPPLPQHLKGETFSHVFGTNTSGLELFLMNRKIKGPCW 498
Query: 363 LEFPEAEKFPSRISWCKYE 381
LE + ISWCK+E
Sbjct: 499 LEVKNPQPLKQPISWCKFE 517
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGTGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|354492235|ref|XP_003508255.1| PREDICTED: DNA polymerase alpha catalytic subunit isoform 1
[Cricetulus griseus]
Length = 1468
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 244/400 (61%), Positives = 310/400 (77%), Gaps = 18/400 (4%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK 474
+I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ +
Sbjct: 757 FILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR 816
Query: 475 --NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527
+K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQ
Sbjct: 817 KPQQKLGDEDEEVDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQ 876
Query: 528 EYNICFTTIPVRMLQDSDITTLCEY------LPEHQVDTGILPSEIKKLVESRRQVKALM 581
E+NICFTT+ L+ + TT E LP+ +D GILP EI+KLVE R+QVK LM
Sbjct: 877 EFNICFTTVQRVALEVQNSTTEDEEQEQIPELPDPNLDMGILPREIRKLVERRKQVKQLM 936
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
KQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK
Sbjct: 937 KQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKE 996
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
+V+ +N EVIYGDTDS+MI+ N + D VFK+GN++K+E NKLYK LE+DIDGV+K +LL
Sbjct: 997 MVQKMNLEVIYGDTDSIMINTNSTNLDEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLL 1056
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
LKKKKYAAL + S+G I QE+KG+D+VRRDW LA + G FVI QIL +QS
Sbjct: 1057 LKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR---- 1112
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + + +I ++ NG +P++ EI K LTK P+
Sbjct: 1113 -DTIVENIQKRLIEIGENVLNGSIPVSQFEINKALTKDPQ 1151
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 102/199 (51%), Positives = 134/199 (67%), Gaps = 7/199 (3%)
Query: 190 IQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCV 249
+Q LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+V+ +H SCCV
Sbjct: 325 VQEVQVDSTHLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWVESAQTHVSCCV 384
Query: 250 IVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKK 302
+V+NI+R +Y LPR + +T PV++ VY EFD IA +YKI+ FKS+ +EK
Sbjct: 385 MVKNIERTLYFLPREMKIDLNTGKETTTPVTMMDVYEEFDSTIAAKYKIMKFKSKVLEKN 444
Query: 303 YAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSW 362
YAF +P VP+ SEYLEVRYSA+ P LP L G+TFSHVFGT TS LE L+ RKIKGP W
Sbjct: 445 YAFEIPDVPEKSEYLEVRYSAEMPPLPQHLKGETFSHVFGTNTSGLELFLMNRKIKGPCW 504
Query: 363 LEFPEAEKFPSRISWCKYE 381
LE + ISWCK+E
Sbjct: 505 LEVKNPQPLKQPISWCKFE 523
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGTGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|326913507|ref|XP_003203079.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Meleagris
gallopavo]
Length = 1503
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/405 (60%), Positives = 305/405 (75%), Gaps = 18/405 (4%)
Query: 409 TMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLP 468
T + +I++IMCELNVLPLA+QITN+ GNV+SRT+MGGRSERNEFLLLHAF+EK Y++P
Sbjct: 770 TWTDAKFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFYEKDYIVP 829
Query: 469 DKQYGKNK-----KEGEETGEANKGK-GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
DKQ K E E+ + NK K GRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLY
Sbjct: 830 DKQVFKKPLQKLVDEDEDFEDQNKSKMGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLY 889
Query: 523 PSIIQEYNICFTTIPVRMLQDSD------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
PSIIQE+NICFTT+ R+ ++ LP+ ++ GILP EI+KLVE RRQ
Sbjct: 890 PSIIQEFNICFTTVQ-RLSSEAQKRAEVEEEEEIPELPDPSLEMGILPKEIRKLVERRRQ 948
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL
Sbjct: 949 VKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREIL 1008
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
++TK +V+ +N EVIYGDTDS+MI+ N + D VFK+GN+IKSE NKLYK LE+DIDGV+
Sbjct: 1009 MHTKEMVQKMNLEVIYGDTDSIMINTNSTNLDEVFKLGNKIKSEVNKLYKLLEIDIDGVF 1068
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
K +LLLKKKKYAAL++ +GK + QE+KG+D+VRRDW LA E G +VI QIL +Q
Sbjct: 1069 KSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQP 1128
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + +I ++ NG +P+ EI K LTK P+
Sbjct: 1129 R-----DVIVENIQRRLIEIGENVINGQIPVNQFEINKALTKDPQ 1168
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/208 (49%), Positives = 139/208 (66%), Gaps = 14/208 (6%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + +V R ++LDA+ED Y QPG V+LFGKV+++ N++ SCCV V+NI+R +Y
Sbjct: 353 LPLVHGENDDQVLRFYWLDAYEDQYSQPGVVFLFGKVWIESANTYVSCCVTVKNIERTVY 412
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR + +T+ PV+I V+ EF D I+ +YKI+ FKS+K+EK YAF +P VP
Sbjct: 413 LLPRETEMDLSSGKETETPVTIMNVFKEFNDSISPKYKIMKFKSKKVEKYYAFEIPDVPA 472
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEV+YSA+ P LP DL G+TFSH FGT TS LE LL+ RKIKGP WLE +
Sbjct: 473 KSEYLEVKYSAEYPRLPQDLKGETFSHAFGTNTSSLELLLMSRKIKGPCWLEIKNPQPSN 532
Query: 373 SRISWCKYEVQCNQMEKIRSKQGLIYLI 400
+SWCK +E + K GL+ ++
Sbjct: 533 QSVSWCK-------IEAVAMKPGLVNVV 553
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K KYE VY+E+ E++Y++ V +RQ+DDWI DD G GYVEDGR
Sbjct: 30 ALERLKKAKA-GEKLKYEVEEFTGVYDEIDEEQYSKIVRERQDDDWIVDDDGIGYVEDGR 88
Query: 165 EIF 167
EIF
Sbjct: 89 EIF 91
>gi|195445744|ref|XP_002070466.1| GK12074 [Drosophila willistoni]
gi|194166551|gb|EDW81452.1| GK12074 [Drosophila willistoni]
Length = 1468
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 250/439 (56%), Positives = 316/439 (71%), Gaps = 28/439 (6%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 737 NITKLISLTMQDASYMLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 796
Query: 461 HEKSYVLPDKQ---------YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDK 511
HEK+Y++PDK+ + G+A GRKKAAY+GGLVLEP +G Y+K
Sbjct: 797 HEKNYIVPDKRPVRRGGAANAIADNDATTAPGDATTA-GRKKAAYAGGLVLEPMRGLYEK 855
Query: 512 FIILMDFNSLYPSIIQEYNICFTTI--PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKK 569
FI+LMDFNSLYPSIIQEYNICFTT+ PV D+D + LPE + GILP ++K+
Sbjct: 856 FILLMDFNSLYPSIIQEYNICFTTVQQPV----DADELPI---LPESNAEPGILPLQLKR 908
Query: 570 LVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVT 629
LVESRR+VK LM P+LSS+L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT
Sbjct: 909 LVESRREVKKLMAAPDLSSELHMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVT 968
Query: 630 AKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
KGREIL NT+ LV+ LNY+V+YGDTDSLMI+ N+ DYD V+KIG QIK NKLYKQLE
Sbjct: 969 HKGREILTNTQQLVQKLNYDVVYGDTDSLMINTNITDYDQVYKIGYQIKQSVNKLYKQLE 1028
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
LDIDGV+ +LLLKKKKYAA+ +SK G + QE KG+D+VRRDWSQLA GK V+
Sbjct: 1029 LDIDGVFSCLLLLKKKKYAAVKVSKTPKGVLKREQEHKGLDIVRRDWSQLAIMLGKGVLD 1088
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKV 805
+IL E+ L++++ +H +++I+ + VPL L ITKQLT+AP+ +
Sbjct: 1089 EILAEK-----PLEEKIDAVHHQLERIKDQVLQSAVPLPLYVITKQLTRAPQEYANSASL 1143
Query: 806 CITQIRLSRNRRGRRRRRR 824
Q+ L NR RR ++
Sbjct: 1144 PHVQVALRMNREKNRRYKK 1162
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 87/195 (44%), Positives = 118/195 (60%), Gaps = 20/195 (10%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 258
S LA D E R ++ +A+ED K PG V+LFG++ S CV VQNI+R +
Sbjct: 330 STSLANDEEQ---LRFWYWEAWEDPLKLPGEVFLFGRM-----ADGKSICVRVQNINRVL 381
Query: 259 YLLPRSEHLK--TKEP----VSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG-- 309
YLLPR L TKEP V++A +Y EFD QIA + K+ +F+SRK+ K +A + G
Sbjct: 382 YLLPRQYLLDPITKEPTKQMVTVADIYKEFDTQIAAELKLDNFRSRKVSKNFANHAIGID 441
Query: 310 VPDLSEYLEVRYSAKCPALP--SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
VP +YLEV Y K PA P ++ D+ +HVFGT T+ LE LL+RKIKGP WL+
Sbjct: 442 VPQTCDYLEVHYDGKKPA-PNVANKKYDSIAHVFGTTTNSLERFLLDRKIKGPGWLQISG 500
Query: 368 AEKFPSRISWCKYEV 382
+ P+ +SWCK +V
Sbjct: 501 FKTSPAPMSWCKTDV 515
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQED-DWIDDDG 155
IDK +FAA ++L+ LKG K + E D+ VYE V E+EY +R ++ + DWI+DDG
Sbjct: 16 IDKNGRFAAMERLRQLKGTKNKCQVEEQVDD-VYEVVDEREYNKRAQEKYGNGDWIEDDG 74
Query: 156 GDGYVEDGREIF 167
GY EDGR+ F
Sbjct: 75 T-GYTEDGRDFF 85
>gi|449282368|gb|EMC89212.1| DNA polymerase alpha catalytic subunit, partial [Columba livia]
Length = 1461
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/405 (59%), Positives = 306/405 (75%), Gaps = 18/405 (4%)
Query: 409 TMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLP 468
T + +I++IMCELNVLPLA+QITN+ GNV+SRT+MGGRSERNEFLLLHAF+EK Y++P
Sbjct: 735 TWTDAKFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFYEKDYIVP 794
Query: 469 DKQYGKNK-----KEGEETGEANKGK-GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
DKQ K E E+ + NK K G+KKAAY+GGLVL+PK GFYDKFI+L+DFNSLY
Sbjct: 795 DKQVFKKPLQKLVDEDEDFEDQNKSKIGKKKAAYAGGLVLDPKVGFYDKFILLLDFNSLY 854
Query: 523 PSIIQEYNICFTTIPVRMLQDSD------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
PSIIQE+NICFTT+ R+ ++ LP+ ++ GILP EI+KLVE RRQ
Sbjct: 855 PSIIQEFNICFTTVQ-RLSSEAQKRAEVNEEEEIPELPDPSLEMGILPKEIRKLVERRRQ 913
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL
Sbjct: 914 VKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREIL 973
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
++TK +V+ +N EVIYGDTDS+MI+ N + D VFK+GN+IKSE NKLYK LE+DIDGV+
Sbjct: 974 MHTKEMVQKMNLEVIYGDTDSIMINTNSTNLDEVFKLGNKIKSEVNKLYKLLEIDIDGVF 1033
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
K +LLLKKKKYAAL++ +GK + QE+KG+D+VRRDW LA E G ++ISQIL +Q
Sbjct: 1034 KSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYIISQILSDQP 1093
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + +I ++ NG +P+ EI K LTK P+
Sbjct: 1094 R-----DIIVENIQRRLIEIGENVINGQIPVNQFEINKALTKDPQ 1133
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 140/210 (66%), Gaps = 14/210 (6%)
Query: 198 DSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 257
D LPL + +V R ++LDA+ED Y QPG V+LFGKV+++ N++ SCCV V+NI+R
Sbjct: 316 DLLPLVNGENDDQVLRFYWLDAYEDQYSQPGVVFLFGKVWIESANTYVSCCVTVKNIERT 375
Query: 258 IYLLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGV 310
+YLLPR +T+ PV+I V+ EF D I+ +YKI+ FKS+K+EK YAF +P +
Sbjct: 376 VYLLPRETEFDLSTGKETETPVTIMSVFKEFNDCISPKYKIMKFKSKKVEKYYAFEIPDI 435
Query: 311 PDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEK 370
P SEYLEV+YSA+CP LP DL G TFSH+FGT TS LE LLL RKIKGP WLE +
Sbjct: 436 PAKSEYLEVKYSAECPRLPQDLKGQTFSHIFGTNTSSLELLLLSRKIKGPCWLEIKNPQP 495
Query: 371 FPSRISWCKYEVQCNQMEKIRSKQGLIYLI 400
+SWCK +E + K GL+ ++
Sbjct: 496 SSQSVSWCK-------VEAVAVKPGLVNVV 518
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 116 GVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIED 173
G K KYE VY+E+ E+EY++RV +RQ+DDWI DD G GYVEDGREIFD+D++D
Sbjct: 6 GEKIKYEVEEFTGVYDEIDEEEYSKRVRERQDDDWIVDDDGIGYVEDGREIFDEDLDD 63
>gi|397497681|ref|XP_003819634.1| PREDICTED: DNA polymerase alpha catalytic subunit [Pan paniscus]
Length = 1462
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1037 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 162/286 (56%), Gaps = 40/286 (13%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 318 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 377
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 378 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 437
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 438 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 497
Query: 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
WLE + +SWCK E M ++ ++
Sbjct: 498 WLEVKSPQLLNQPVSWCKVE---------------------------AMALKPDLVNVIK 530
Query: 422 ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+++ PL + ++ +T+ ++ +NE + + A S+ L
Sbjct: 531 DVSPPPLVVMAFSM------KTMQNAKNHQNEIIAMAALVHHSFAL 570
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|410335293|gb|JAA36593.1| polymerase (DNA directed), alpha 1, catalytic subunit [Pan
troglodytes]
Length = 1468
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 744 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 803
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 804 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 863
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 864 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 922
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 923 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 982
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 983 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1042
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1043 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1102
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1103 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1150
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 162/286 (56%), Gaps = 40/286 (13%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 324 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 383
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 384 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 443
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 444 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 503
Query: 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
WLE + +SWCK E M ++ ++
Sbjct: 504 WLEVKSPQLLNQPVSWCKVE---------------------------AMALKPDLVNVIK 536
Query: 422 ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+++ PL + ++ +T+ ++ +NE + + A S+ L
Sbjct: 537 DVSPPPLVVMAFSM------KTMQNAKNHQNEIIAMAALVHHSFAL 576
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|106507301|ref|NP_058633.2| DNA polymerase alpha catalytic subunit [Homo sapiens]
gi|60392197|sp|P09884.2|DPOLA_HUMAN RecName: Full=DNA polymerase alpha catalytic subunit; AltName:
Full=DNA polymerase alpha catalytic subunit p180
gi|30089008|gb|AAP13534.1| polymerase (DNA directed), alpha [Homo sapiens]
gi|119619434|gb|EAW99028.1| polymerase (DNA directed), alpha [Homo sapiens]
Length = 1462
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1037 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 162/286 (56%), Gaps = 40/286 (13%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 318 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 377
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 378 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 437
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 438 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 497
Query: 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
WLE + +SWCK E M ++ ++
Sbjct: 498 WLEVKSPQLLNQPVSWCKVE---------------------------AMALKPDLVNVIK 530
Query: 422 ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+++ PL + ++ +T+ ++ +NE + + A S+ L
Sbjct: 531 DVSPPPLVVMAFSM------KTMQNAKNHQNEIIAMAALVHHSFAL 570
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|6015013|sp|O89042.1|DPOLA_RAT RecName: Full=DNA polymerase alpha catalytic subunit; AltName:
Full=DNA polymerase alpha catalytic subunit p180
gi|3676242|emb|CAA09720.1| DNA polymerase alpha subunit I [Rattus norvegicus]
Length = 1451
Score = 465 bits (1197), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/400 (60%), Positives = 311/400 (77%), Gaps = 19/400 (4%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK 474
+I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ +
Sbjct: 758 FILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR 817
Query: 475 --NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527
+K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQ
Sbjct: 818 KPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQ 877
Query: 528 EYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
E+NICFTT+ ++ +D + + E LP+ +D GILP EI+KLVE R+QVK LM
Sbjct: 878 EFNICFTTVQRVASETLKATEDEEQEQIPE-LPDPNLDMGILPREIRKLVERRKQVKQLM 936
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
KQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK
Sbjct: 937 KQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKE 996
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
+V+ +N EVIYGDTDS+MI+ N + + VFK+GN++K+E NKLYK LE+DIDGV+K +LL
Sbjct: 997 MVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLL 1056
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
LKKKKYAAL + S+G I QE+KG+D+VRRDW LA + G FVI QIL +QS
Sbjct: 1057 LKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR---- 1112
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1113 -DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1151
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 163/263 (61%), Gaps = 15/263 (5%)
Query: 131 EEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIF-DDDIEDVPQKKEKHDKRKKNKN 189
EEV E+E + QE + ++ + E G F D + DV D +K++N
Sbjct: 267 EEVDEEEPVTAKIWDQESEPVEGVKHEADPETGTTSFLDSFLPDV----SCWDIDQKDEN 322
Query: 190 ---IQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSS 246
+Q + LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+V+ +H S
Sbjct: 323 SFLLQEVQVDSNHLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWVESAKTHVS 382
Query: 247 CCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKI 299
CCV+V+NI+R +Y LPR + +T P+++ VY EFD +I+ +YKI+ FKS+ +
Sbjct: 383 CCVMVKNIERTLYFLPREMKIDLNTGKETATPITMKDVYEEFDSKISAKYKIMKFKSKIV 442
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKG 359
EK YAF +P VP+ SEYLEVRYSA+ P LP +L G+TFSHVFGT TS LE L+ RKIKG
Sbjct: 443 EKNYAFEIPDVPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKG 502
Query: 360 PSWLEFPEAEKFPSRISWCKYEV 382
P WLE + ISWCK+E
Sbjct: 503 PCWLEVKNPQLLNQPISWCKFEA 525
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|410291608|gb|JAA24404.1| polymerase (DNA directed), alpha 1, catalytic subunit [Pan
troglodytes]
Length = 1468
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 744 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 803
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 804 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 863
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 864 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 922
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 923 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 982
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 983 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1042
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1043 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1102
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1103 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1150
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 162/286 (56%), Gaps = 40/286 (13%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 324 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 383
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 384 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 443
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 444 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 503
Query: 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
WLE + +SWCK E M ++ ++
Sbjct: 504 WLEVKSPQLLNQPVSWCKVE---------------------------AMALKPDLVNVIK 536
Query: 422 ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+++ PL + ++ +T+ ++ +NE + + A S+ L
Sbjct: 537 DVSPPPLVVMAFSM------KTMQNAKNHQNEIIAMAALVHHSFAL 576
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|149042309|gb|EDL96016.1| rCG36239 [Rattus norvegicus]
Length = 1468
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/400 (60%), Positives = 311/400 (77%), Gaps = 19/400 (4%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK 474
+I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ +
Sbjct: 758 FILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR 817
Query: 475 --NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527
+K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQ
Sbjct: 818 KPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQ 877
Query: 528 EYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
E+NICFTT+ ++ +D + + E LP+ +D GILP EI+KLVE R+QVK LM
Sbjct: 878 EFNICFTTVQRVASETLKATEDEEQEQIPE-LPDPNLDMGILPREIRKLVERRKQVKQLM 936
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
KQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK
Sbjct: 937 KQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKE 996
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
+V+ +N EVIYGDTDS+MI+ N + + VFK+GN++K+E NKLYK LE+DIDGV+K +LL
Sbjct: 997 MVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLL 1056
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
LKKKKYAAL + S+G I QE+KG+D+VRRDW LA + G FVI QIL +QS
Sbjct: 1057 LKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR---- 1112
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1113 -DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1151
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 163/263 (61%), Gaps = 15/263 (5%)
Query: 131 EEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIF-DDDIEDVPQKKEKHDKRKKNKN 189
EEV E+E + QE + ++ + E G F D + DV D +K++N
Sbjct: 267 EEVDEEEPVTAKIWDQESEPVEGVKHEADPETGTTSFLDSFLPDV----SCWDIDQKDEN 322
Query: 190 ---IQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSS 246
+Q + LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+V+ +H S
Sbjct: 323 SFLLQEVQVDSNHLPLVKGADDEQVFQFYWLDAYEDAYNQPGVVFLFGKVWVESAKTHVS 382
Query: 247 CCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKI 299
CCV+V+NI+R +Y LPR + +T P+++ VY EFD +I+ +YKI+ FKS+ +
Sbjct: 383 CCVMVKNIERTLYFLPREMKIDLNTGKETATPITMKDVYEEFDSKISAKYKIMKFKSKIV 442
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKG 359
EK YAF +P VP+ SEYLEVRYSA+ P LP +L G+TFSHVFGT TS LE L+ RKIKG
Sbjct: 443 EKNYAFEIPDVPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKG 502
Query: 360 PSWLEFPEAEKFPSRISWCKYEV 382
P WLE + ISWCK+E
Sbjct: 503 PCWLEVKNPQLLNQPISWCKFEA 525
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|118084071|ref|XP_416792.2| PREDICTED: DNA polymerase alpha catalytic subunit [Gallus gallus]
Length = 1496
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/405 (59%), Positives = 305/405 (75%), Gaps = 18/405 (4%)
Query: 409 TMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLP 468
T + +I++IMCELNVLPLA+QITN+ GNV+SRT+MGGRSERNEFLLLHAF+EK Y++P
Sbjct: 770 TWTDAKFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFYEKDYIVP 829
Query: 469 DKQYGKNK-----KEGEETGEANKGK-GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
DKQ K E E+ + NK K G+KKAAY+GGLVL+PK GFYDKFI+L+DFNSLY
Sbjct: 830 DKQVFKKPLQKLVDEDEDFEDQNKSKIGKKKAAYAGGLVLDPKVGFYDKFILLLDFNSLY 889
Query: 523 PSIIQEYNICFTTIPVRMLQDSD------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
PSIIQE+NICFTT+ R+ ++ LP+ ++ GILP EI+KLVE RRQ
Sbjct: 890 PSIIQEFNICFTTVQ-RLSSEAQKRAEVEEEEEIPELPDPSLEMGILPKEIRKLVERRRQ 948
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL
Sbjct: 949 VKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREIL 1008
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
++TK +V+ +N EVIYGDTDS+MI+ N + D VFK+GN+IKSE NKLYK LE+DIDGV+
Sbjct: 1009 MHTKEMVQKMNLEVIYGDTDSIMINTNSTNLDEVFKLGNKIKSEVNKLYKLLEIDIDGVF 1068
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
K +LLLKKKKYAAL++ +GK + QE+KG+D+VRRDW LA E G +VI QIL +Q
Sbjct: 1069 KSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQP 1128
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + +I ++ NG +P+ EI K LTK P+
Sbjct: 1129 R-----DIIVENIQRRLIEIGENVINGQIPVNQFEINKALTKDPQ 1168
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 103/208 (49%), Positives = 139/208 (66%), Gaps = 14/208 (6%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + +V R ++LDA+ED Y QPG V+LFGKV+++ N++ SCCV V+NI+R +Y
Sbjct: 353 LPLVNGENDDQVLRFYWLDAYEDQYSQPGVVFLFGKVWIESANTYVSCCVTVKNIERTVY 412
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR + +T+ PV+I V+ EF D I+ +YKI+ FKS+K+EK YAF +P VP
Sbjct: 413 LLPRETEMDLSSGKETETPVTIMNVFKEFNDCISPKYKIMKFKSKKVEKYYAFEIPDVPA 472
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEV+YSA+ P LP DL G+TFSH FGT TS LE LL+ RKIKGP WLE +
Sbjct: 473 KSEYLEVKYSAEYPRLPQDLKGETFSHAFGTNTSSLELLLMSRKIKGPCWLEIKNPQPSN 532
Query: 373 SRISWCKYEVQCNQMEKIRSKQGLIYLI 400
+SWCK +E + K GL+ ++
Sbjct: 533 QSVSWCK-------VEAVAMKPGLVNVV 553
Score = 55.8 bits (133), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K KYE VY+E+ E++Y++ V +RQ+DDWI DD G GYVEDGR
Sbjct: 30 ALERLKKAKA-GEKLKYEVEEFTGVYDEIDEEQYSKIVRERQDDDWIVDDDGIGYVEDGR 88
Query: 165 EIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
EIFD+D++D K K K I N K
Sbjct: 89 EIFDEDLDDDALGSSKKGKTGKTSTIGKKNVK 120
>gi|281604221|ref|NP_445931.1| DNA polymerase alpha catalytic subunit [Rattus norvegicus]
Length = 1468
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/400 (60%), Positives = 311/400 (77%), Gaps = 19/400 (4%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK 474
+I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ +
Sbjct: 758 FILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR 817
Query: 475 --NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527
+K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQ
Sbjct: 818 KPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQ 877
Query: 528 EYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
E+NICFTT+ ++ +D + + E LP+ +D GILP EI+KLVE R+QVK LM
Sbjct: 878 EFNICFTTVQRVASETLKATEDEEQEQIPE-LPDPNLDMGILPREIRKLVERRKQVKQLM 936
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
KQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK
Sbjct: 937 KQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKE 996
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
+V+ +N EVIYGDTDS+MI+ N + + VFK+GN++K+E NKLYK LE+DIDGV+K +LL
Sbjct: 997 MVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLL 1056
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
LKKKKYAAL + S+G I QE+KG+D+VRRDW LA + G FVI QIL +QS
Sbjct: 1057 LKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR---- 1112
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1113 -DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1151
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 163/263 (61%), Gaps = 15/263 (5%)
Query: 131 EEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIF-DDDIEDVPQKKEKHDKRKKNKN 189
EEV E+E + QE + ++ + E G F D + DV D +K++N
Sbjct: 267 EEVDEEEPVTAKIWDQESEPVEGVKHEADPETGTTSFLDSFLPDV----SCWDIDQKDEN 322
Query: 190 ---IQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSS 246
+Q + LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+V+ +H S
Sbjct: 323 SFLLQEVQVDSNHLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWVESAKTHVS 382
Query: 247 CCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKI 299
CCV+V+NI+R +Y LPR + +T P+++ VY EFD +I+ +YKI+ FKS+ +
Sbjct: 383 CCVMVKNIERTLYFLPREMKIDLNTGKETATPITMKDVYEEFDSKISAKYKIMKFKSKIV 442
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKG 359
EK YAF +P VP+ SEYLEVRYSA+ P LP +L G+TFSHVFGT TS LE L+ RKIKG
Sbjct: 443 EKNYAFEIPDVPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKG 502
Query: 360 PSWLEFPEAEKFPSRISWCKYEV 382
P WLE + ISWCK+E
Sbjct: 503 PCWLEVKNPQLLNQPISWCKFEA 525
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|296235154|ref|XP_002762781.1| PREDICTED: DNA polymerase alpha catalytic subunit [Callithrix
jacchus]
Length = 1462
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/432 (57%), Positives = 325/432 (75%), Gaps = 29/432 (6%)
Query: 387 MEKIRS----KQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSR 442
ME IR+ L+YL+ + T +++I++IMCELNVLPLA+QITN+ GN++SR
Sbjct: 725 MENIRNMYSDSSQLLYLL------EHTWKDANFILQIMCELNVLPLALQITNIAGNIMSR 778
Query: 443 TLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAA 495
TLMGGRSERNEFLLLHAF+E +Y++PDKQ + +K G+E G+ NK KGRKKAA
Sbjct: 779 TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAA 838
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTL 549
Y+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+ ++ +D + +
Sbjct: 839 YAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVAAEAQKITEDGEQEQI 898
Query: 550 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
E LP+ ++ GILP EI+KLVE R+QVK LMK +L+ DL++QYDIRQKALKLTANSMY
Sbjct: 899 PE-LPDPNLEMGILPREIRKLVERRKQVKQLMKLQDLNPDLMLQYDIRQKALKLTANSMY 957
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 669
GCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + +
Sbjct: 958 GCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEE 1017
Query: 670 VFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGV 729
VFK+GN++KSE NKLYK LE+DIDG++K +LLLKKKKYAAL + S+GK I QE+KG+
Sbjct: 1018 VFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPTSDGKYITKQELKGL 1077
Query: 730 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
D+VRRDW LA + G FVI QIL +QS D ++NI + + +I ++ NG VP++
Sbjct: 1078 DIVRRDWCDLAKDTGSFVIGQILSDQSR-----DIIVENIQKRLIEIGENVLNGSVPVSQ 1132
Query: 790 LEITKQLTKAPE 801
EI K LTK P+
Sbjct: 1133 FEINKALTKDPQ 1144
Score = 215 bits (548), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 101/190 (53%), Positives = 132/190 (69%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VF ++LDA+ED Y QPG V++FGKV+++ +H SCCV+V+NI+R +Y
Sbjct: 329 LPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFMFGKVWIESAQTHVSCCVMVKNIERTLY 388
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + +T PVS+ VY EFD+ IAT+YKI+ FKS+ +EK YAF +P VP+
Sbjct: 389 FLPREMKIDLNTGKETGTPVSMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPE 448
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 449 KSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLN 508
Query: 373 SRISWCKYEV 382
ISWCK E
Sbjct: 509 QPISWCKVEA 518
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A +KLK K G K KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALEKLKKAKA-GEKCKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|426395441|ref|XP_004063981.1| PREDICTED: DNA polymerase alpha catalytic subunit [Gorilla gorilla
gorilla]
Length = 1449
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 242/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 744 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 803
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 804 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 863
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 864 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 922
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 923 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 982
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 983 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1042
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1043 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1102
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1103 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1150
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 162/286 (56%), Gaps = 40/286 (13%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 324 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 383
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 384 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 443
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 444 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 503
Query: 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
WLE + +SWCK E M ++ ++
Sbjct: 504 WLEVKSPQLLNQPVSWCKVE---------------------------AMALKPDLVNVIK 536
Query: 422 ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+++ PL + ++ +T+ ++ +NE + + A S+ L
Sbjct: 537 DVSPPPLVVMAFSM------KTMQNAKNHQNEIIAMAALVHHSFAL 576
Score = 48.9 bits (115), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|62086809|dbj|BAD92011.1| DNA polymerase alpha catalytic subunit [Gallus gallus]
Length = 1462
Score = 464 bits (1195), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/405 (59%), Positives = 305/405 (75%), Gaps = 18/405 (4%)
Query: 409 TMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLP 468
T + +I++IMCELNVLPLA+QITN+ GNV+SRT+MGGRSERNEFLLLHAF+EK Y++P
Sbjct: 736 TWTDAKFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFYEKDYIVP 795
Query: 469 DKQYGKNK-----KEGEETGEANKGK-GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
DKQ K E E+ + NK K G+KKAAY+GGLVL+PK GFYDKFI+L+DFNSLY
Sbjct: 796 DKQVFKKPLQKLVDEDEDFEDQNKSKIGKKKAAYAGGLVLDPKVGFYDKFILLLDFNSLY 855
Query: 523 PSIIQEYNICFTTIPVRMLQDSD------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
PSIIQE+NICFTT+ R+ ++ LP+ ++ GILP EI+KLVE RRQ
Sbjct: 856 PSIIQEFNICFTTVQ-RLSSEAQKRAEVEEEEEIPELPDPSLEMGILPKEIRKLVERRRQ 914
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL
Sbjct: 915 VKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREIL 974
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
++TK +V+ +N EVIYGDTDS+MI+ N + D VFK+GN+IKSE NKLYK LE+DIDGV+
Sbjct: 975 MHTKEMVQKMNLEVIYGDTDSIMINTNSTNLDEVFKLGNKIKSEVNKLYKLLEIDIDGVF 1034
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
K +LLLKKKKYAAL++ +GK + QE+KG+D+VRRDW LA E G +VI QIL +Q
Sbjct: 1035 KSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQP 1094
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + +I ++ NG +P+ EI K LTK P+
Sbjct: 1095 R-----DIIVENIQRRLIEIGENVINGQIPVNQFEINKALTKDPQ 1134
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 140/208 (67%), Gaps = 14/208 (6%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + +V R ++LDA+ED Y QPG V+LFGKV+++ N++ SCCV V+NI+R +Y
Sbjct: 319 LPLVNGENDDQVLRFYWLDAYEDQYSQPGVVFLFGKVWIESANTYVSCCVTVKNIERTVY 378
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR + +T+ PV+I V+ EF D I+ +YKI+ FKS+K+EK YAF +P VP
Sbjct: 379 LLPRETEMDLSSGKETETPVTIMNVFKEFNDCISPKYKIMKFKSKKVEKYYAFEIPDVPA 438
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE LL+ RKIKGP WLE +
Sbjct: 439 KSEYLEVKYSAEYPRLPQDLKGETFSHVFGTNTSSLELLLMSRKIKGPCWLEIKNPQPSN 498
Query: 373 SRISWCKYEVQCNQMEKIRSKQGLIYLI 400
+SWCK +E + K GL+ ++
Sbjct: 499 QSVSWCK-------VEAVAMKPGLVNVV 519
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 50/81 (61%)
Query: 116 GVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIEDVP 175
G K KYE VY+E+ E++Y++ V +RQ+DDWI DD G GYVEDGREIFD+D++D
Sbjct: 6 GEKLKYEVEEFTGVYDEIDEEQYSKIVRERQDDDWIVDDDGIGYVEDGREIFDEDLDDDA 65
Query: 176 QKKEKHDKRKKNKNIQNPNAK 196
K K K I N K
Sbjct: 66 LGSSKKGKTGKTSTIGKKNVK 86
>gi|109130218|ref|XP_001091195.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Macaca
mulatta]
Length = 1462
Score = 464 bits (1194), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + +S+G QE+KG+D+VRRDW LA + G FVI
Sbjct: 1037 EIDIDGIFKSLLLLKKKKYAALVVEPMSDGNYATKQELKGLDIVRRDWCDLAKDTGNFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 177/322 (54%), Gaps = 47/322 (14%)
Query: 154 DGGDGYVED-GREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVF 212
D G G + D GR + D D+ Q+ + + ++Q LPL + ++VF
Sbjct: 288 DSGKGTMSDLGRFLPDVSCWDIDQEGDS------SFSVQEVQVDSSQLPLVKGADEEQVF 341
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL----- 267
++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y LPR +
Sbjct: 342 HFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTG 401
Query: 268 -KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
+T PVS+ VY EFD+ IAT+YKI+ FKS+ +EK YAF +P VP+ SEYLEV+YSA+
Sbjct: 402 KETGTPVSMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVKYSAEI 461
Query: 326 PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 385
P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE + ISWCK E
Sbjct: 462 PQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPISWCKVE---- 517
Query: 386 QMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLM 445
M ++ ++ +++ PL + ++ +T+
Sbjct: 518 -----------------------AMALKPDLVNVIKDVSPPPLVVMAFSM------KTMQ 548
Query: 446 GGRSERNEFLLLHAFHEKSYVL 467
++ +NE + + A S+ L
Sbjct: 549 NAKNHQNEIIAVAALVHHSFAL 570
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|345482887|ref|XP_001603716.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Nasonia
vitripennis]
Length = 1528
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/397 (58%), Positives = 304/397 (76%), Gaps = 13/397 (3%)
Query: 405 FIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS 464
I+ TM+ +SYI+ I+ ELN+LPLA+QITN+ GN LSRTL GR+ERNEFLLLHAF++K
Sbjct: 808 LIQSTMVEASYILGIVTELNILPLALQITNIAGNTLSRTLSAGRAERNEFLLLHAFYQKG 867
Query: 465 YVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPS 524
Y+ PDK+ KKEG EA G G+KK AY+GGLVLEPKKGFYDK I+LMDFNSLYPS
Sbjct: 868 YITPDKRTQTKKKEG---AEATHG-GKKKPAYAGGLVLEPKKGFYDKLILLMDFNSLYPS 923
Query: 525 IIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP 584
IIQE+N+CFTT+P + D L PE V+ G++P+EI+KLV+SR +VK LMK P
Sbjct: 924 IIQEFNLCFTTVPGAAFANVDDLEL----PEPTVEDGVVPTEIRKLVQSRVEVKKLMKAP 979
Query: 585 NLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
NLS +L +QY+IRQ ALKLTANSMYGCLG + RF+A+ LAALVT KGREIL N+K+LVE
Sbjct: 980 NLSPELKVQYNIRQLALKLTANSMYGCLGATHCRFYAKGLAALVTMKGREILQNSKALVE 1039
Query: 645 NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKK 704
NYEVIYGDTDS+MI+ N+ +YD VF IG +IK + NK YK++ELDIDGV++Y+LLL+K
Sbjct: 1040 KANYEVIYGDTDSIMINTNILEYDQVFSIGKEIKKDVNKTYKKVELDIDGVFRYLLLLQK 1099
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
KKYAA+++SK +G+M ++E+KG+D+VRRDW LA + G ++ Q+L +QS +
Sbjct: 1100 KKYAAVTMSKSPSGQMQYTKELKGLDIVRRDWCGLACDIGNQILDQLLSDQSS-----ES 1154
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
R+ I + ++++ +L G +PL+LL ITKQL+K P
Sbjct: 1155 RVGKIFDILQQVGNNLREGNLPLSLLVITKQLSKNPH 1191
Score = 165 bits (418), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 112/191 (58%), Gaps = 3/191 (1%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LP T+ +KVFR F+LDAFED YKQPG VYLFGKVFV E N + SCC+ V+NI R+IY
Sbjct: 392 LPTTTNAAGEKVFRFFWLDAFEDPYKQPGVVYLFGKVFVNELNEYVSCCLGVKNISRRIY 451
Query: 260 LLPRSEHLKTKEPVSIAQV---YSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEY 316
L R + E +Q + E + + KI +FK R++ KYAF P ++Y
Sbjct: 452 CLLRDNPNGSDENEEKSQGQRGWEELKEYTAKLKIKEFKCRELSMKYAFEREDTPTQAQY 511
Query: 317 LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRIS 376
LEVRY+A P +D SG VFGT + LE LL+ER +KGP WL+ + S
Sbjct: 512 LEVRYAATDPPFEADYSGPNIEAVFGTTVNALELLLIERNLKGPCWLDLKAPLPVDNAFS 571
Query: 377 WCKYEVQCNQM 387
WCK + C ++
Sbjct: 572 WCKVQANCTRI 582
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 61/77 (79%), Gaps = 1/77 (1%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDK+ + AA +KLK LKG+GVKHKYE ENVY+EV EKEY + VL RQ DDWI DDG
Sbjct: 15 IDKSGRLAALEKLKQLKGKGVKHKYEVDDLENVYDEVDEKEYGKTVLDRQYDDWIVDDGS 74
Query: 157 DGYVEDGREIFDDDIED 173
GYVEDGREIFDDD++D
Sbjct: 75 -GYVEDGREIFDDDLDD 90
>gi|355704674|gb|EHH30599.1| hypothetical protein EGK_20335 [Macaca mulatta]
Length = 1468
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 744 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 803
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 804 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 863
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 864 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 922
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 923 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 982
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 983 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1042
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + +S+G QE+KG+D+VRRDW LA + G FVI
Sbjct: 1043 EIDIDGIFKSLLLLKKKKYAALVVEPMSDGNYATKQELKGLDIVRRDWCDLAKDTGNFVI 1102
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1103 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1150
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 177/322 (54%), Gaps = 47/322 (14%)
Query: 154 DGGDGYVED-GREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVF 212
D G G + D GR + D D+ Q+ + + ++Q LPL + ++VF
Sbjct: 294 DSGKGTMSDLGRFLPDVSCWDIDQEGDS------SFSVQEVQVDSSQLPLVKGADEEQVF 347
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL----- 267
++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y LPR +
Sbjct: 348 HFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTG 407
Query: 268 -KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
+T PVS+ VY EFD+ IAT+YKI+ FKS+ +EK YAF +P VP+ SEYLEV+YSA+
Sbjct: 408 KETGTPVSMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVKYSAEI 467
Query: 326 PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 385
P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE + ISWCK E
Sbjct: 468 PQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPISWCKVE---- 523
Query: 386 QMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLM 445
M ++ ++ +++ PL + ++ +T+
Sbjct: 524 -----------------------AMALKPDLVNVIKDVSPPPLVVMAFSM------KTMQ 554
Query: 446 GGRSERNEFLLLHAFHEKSYVL 467
++ +NE + + A S+ L
Sbjct: 555 NAKNHQNEIIAVAALVHHSFAL 576
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|345806837|ref|XP_537985.3| PREDICTED: DNA polymerase alpha catalytic subunit [Canis lupus
familiaris]
Length = 1461
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 253/458 (55%), Positives = 332/458 (72%), Gaps = 33/458 (7%)
Query: 387 MEKIRS----KQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSR 442
ME +R+ L+YL+ + T + +I++IMCELNVLPLA+QITN+ GN++SR
Sbjct: 725 MENVRNMYSESSHLLYLL------EHTWKDARFILQIMCELNVLPLALQITNIAGNIMSR 778
Query: 443 TLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAA 495
TLMGGRSERNEFLLLHAF+E +Y++PDKQ + +K G+E G+ANK KGRKKAA
Sbjct: 779 TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEELDGDANKYKKGRKKAA 838
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTL 549
Y+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+ ++ +D + +
Sbjct: 839 YAGGLVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASETQKVTEDGEQEQI 898
Query: 550 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMY
Sbjct: 899 PE-LPDPGLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMY 957
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 669
GCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N D +
Sbjct: 958 GCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTDLEE 1017
Query: 670 VFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGV 729
V+K+GN++KSE NKLYK LE+DIDGV+K +LLLKKKKY AL + S+G QE+KG+
Sbjct: 1018 VYKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVEPTSDGNYSTKQELKGL 1077
Query: 730 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
D+VRRDW LA E G FVI QIL +QS D ++NI + + +I ++ NG VP++
Sbjct: 1078 DIVRRDWCDLAKETGNFVIGQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQ 1132
Query: 790 LEITKQLTKAPEG----GKVCITQIRLSRNRRGRRRRR 823
EI K LTK P+ + + L N +G R+ +
Sbjct: 1133 FEINKALTKDPQDYPDKKSLPHVHVALWMNSQGGRKMK 1170
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 99/190 (52%), Positives = 131/190 (68%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y
Sbjct: 329 LPLVKGTDEEQVFHFYWLDAYEDQYSQPGVVFLFGKVWIESAKTHVSCCVMVKNIERTLY 388
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + +T+ V++ VY EFD+ IA +YKI+ FKS+ +EK YAF +P VP+
Sbjct: 389 FLPREMKIDLNTGKETETLVTMKDVYDEFDEKIAAKYKIMKFKSKPVEKNYAFEIPDVPE 448
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 449 KSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLEMFLMNRKIKGPCWLEVKNPQLLN 508
Query: 373 SRISWCKYEV 382
+SWCK E
Sbjct: 509 QPVSWCKVEA 518
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|62086803|dbj|BAD92008.1| DNA polymerase alpha catalytic subunit [Trachemys scripta]
Length = 1441
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/407 (59%), Positives = 306/407 (75%), Gaps = 22/407 (5%)
Query: 409 TMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLP 468
T + +I++IMCELNVLPLA+QITN+ GNV+SRT+MGGRSERNEFLLLHAF+E+ Y++P
Sbjct: 715 TWTDARFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFYERDYIVP 774
Query: 469 DKQYGKNKK-----EGEETGEANKGK-GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
DKQ K + E E + NK K GRKKAAY+GGLVL+PK GFYD FI+L+DFNSLY
Sbjct: 775 DKQVFKKPQQKLVDEDEGVEDQNKSKIGRKKAAYAGGLVLDPKVGFYDTFILLLDFNSLY 834
Query: 523 PSIIQEYNICFTTIPVRMLQDSDITTLCE--------YLPEHQVDTGILPSEIKKLVESR 574
PSIIQE+NICFTT+ + SD E LP+ ++ GILP EI+KLVE R
Sbjct: 835 PSIIQEFNICFTTV---QRESSDAQKRAEDGVQEEIPELPDPSLEMGILPKEIRKLVERR 891
Query: 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
RQVK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGRE
Sbjct: 892 RQVKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGRE 951
Query: 635 ILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDG 694
IL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN+IKSE NKLYK LE+DIDG
Sbjct: 952 ILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKIKSEVNKLYKLLEIDIDG 1011
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
V+K +LLLKKKKYAAL++ +GK + QE+KG+D+VRRDW LA E G +VI QIL +
Sbjct: 1012 VFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSD 1071
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QS D ++NI + +I ++ NG VP++ EI K LTK P+
Sbjct: 1072 QSR-----DTIVENIQRRLIEIGENVINGRVPISQFEINKALTKDPQ 1113
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 134/189 (70%), Gaps = 7/189 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + +VFR ++LDA+ED Y QPG V+LFGKV+++ ++ SCCV V+NI+R IY
Sbjct: 299 LPLVNGEDGDQVFRFYWLDAYEDQYSQPGVVFLFGKVWIESAETYVSCCVTVKNIERIIY 358
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR + +T+ PV++ +Y EF DQIA +YKI+ F+S+K+EK YAF +P VP
Sbjct: 359 LLPREMQMDLTSGKETENPVTMMNIYQEFNDQIAVKYKIMKFRSKKVEKNYAFEIPDVPA 418
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
S+YLEVRYSA+ P LP DL G+TFSHVFGT TS LE LL+ RKIKGPSWLE +
Sbjct: 419 KSDYLEVRYSAEFPRLPQDLKGETFSHVFGTNTSSLELLLMSRKIKGPSWLEIKNPQPLS 478
Query: 373 SRISWCKYE 381
+SWCK E
Sbjct: 479 HPVSWCKVE 487
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 39/46 (84%)
Query: 128 NVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIED 173
+VYEEV E +Y++ V +RQ+DDWI DD G GYVEDGREIFD+D+ED
Sbjct: 3 SVYEEVDEAQYSKMVRERQDDDWIVDDDGIGYVEDGREIFDEDLED 48
>gi|297709603|ref|XP_002831517.1| PREDICTED: DNA polymerase alpha catalytic subunit [Pongo abelii]
Length = 1462
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/413 (58%), Positives = 318/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ +K KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTSKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVSSEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + +S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1037 EIDIDGVFKSLLLLKKKKYAALVVEPMSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQSR-----DTIVENIQKMLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 216 bits (551), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 111/286 (38%), Positives = 162/286 (56%), Gaps = 40/286 (13%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 318 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 377
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 378 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 437
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 438 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 497
Query: 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
WLE + ISWCK E M ++ ++
Sbjct: 498 WLEVKSPQLLNQPISWCKVE---------------------------AMALKPDLVNVIK 530
Query: 422 ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+++ PL + ++ +T+ ++ +NE + + A S+ L
Sbjct: 531 DVSPPPLVVMAFSM------KTMQNAKNHQNEIIAVAALVHHSFAL 570
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|332224116|ref|XP_003261212.1| PREDICTED: DNA polymerase alpha catalytic subunit [Nomascus
leucogenys]
Length = 1462
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 242/413 (58%), Positives = 316/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY GGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYVGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQQQIPE-LPDPSLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1037 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 216 bits (551), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 163/286 (56%), Gaps = 40/286 (13%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 318 SVQEVQVDSSHLPLVKGADGEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 377
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T+ P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 378 VMVKNIERTLYFLPREMKIDLNTGKETETPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 437
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLE++YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 438 NYAFEIPDVPEKSEYLELKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 497
Query: 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
WLE + ISWCK E M ++ ++
Sbjct: 498 WLEVKSPQLLNQPISWCKVE---------------------------AMALKPDLVNVIK 530
Query: 422 ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+++ PL + ++ +T+ ++ +NE + + A S+ L
Sbjct: 531 DVSPPPLVVMAFSM------KTMQNAKNHQNEIIAMAALVHHSFAL 570
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDFTAVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|383419303|gb|AFH32865.1| DNA polymerase alpha catalytic subunit [Macaca mulatta]
Length = 1465
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 741 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 800
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 801 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 860
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 861 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 919
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 920 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 979
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 980 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1039
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + +S+G QE+KG+D+VRRDW LA + G FVI
Sbjct: 1040 EIDIDGIFKSLLLLKKKKYAALVVEPMSDGNYATKQELKGLDIVRRDWCDLAKDTGNFVI 1099
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1100 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1147
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 177/322 (54%), Gaps = 47/322 (14%)
Query: 154 DGGDGYVED-GREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVF 212
D G G + D GR + D D+ Q+ + + ++Q LPL + ++VF
Sbjct: 291 DSGKGTMSDLGRFLPDVSCWDIDQEGDS------SFSVQEVQVDSSQLPLVKGADEEQVF 344
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL----- 267
++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y LPR +
Sbjct: 345 HFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTG 404
Query: 268 -KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
+T PVS+ VY EFD+ IAT+YKI+ FKS+ +EK YAF +P VP+ SEYLEV+YSA+
Sbjct: 405 KETGTPVSMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVKYSAEI 464
Query: 326 PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 385
P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE + ISWCK E
Sbjct: 465 PQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPISWCKVE---- 520
Query: 386 QMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLM 445
M ++ ++ +++ PL + ++ +T+
Sbjct: 521 -----------------------AMALKPDLVNVIKDVSPPPLVVMAFSM------KTMQ 551
Query: 446 GGRSERNEFLLLHAFHEKSYVL 467
++ +NE + + A S+ L
Sbjct: 552 NAKNHQNEIIAVAALVHHSFAL 573
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 37 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 95
Query: 165 EIF 167
EIF
Sbjct: 96 EIF 98
>gi|449483061|ref|XP_004174992.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase alpha catalytic
subunit [Taeniopygia guttata]
Length = 1750
Score = 464 bits (1193), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/405 (59%), Positives = 304/405 (75%), Gaps = 18/405 (4%)
Query: 409 TMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLP 468
T + + +I++IMCELNVLPLA+QITN+ GNV+SRT+MGGRSERNEFLLLHAFHEK Y++P
Sbjct: 988 TWIDAKFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFHEKDYIVP 1047
Query: 469 DKQYGKNKK-----EGEETGEANKGK-GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
DKQ K E E+ + NK K G+KKAAY+GGLVLEPK GFYDKFI+L+DFNSLY
Sbjct: 1048 DKQVFKKPPQKLVDEDEDFEDQNKSKIGKKKAAYAGGLVLEPKVGFYDKFILLLDFNSLY 1107
Query: 523 PSIIQEYNICFTTIPVRMLQDSD------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
PSIIQE+NICFTT+ R+ ++ LP+ ++ GILP EI+KLVE RRQ
Sbjct: 1108 PSIIQEFNICFTTV-QRLSSEAQKRAETEEEEEIPELPDPSLEMGILPKEIRKLVERRRQ 1166
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL
Sbjct: 1167 VKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREIL 1226
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
++TK +V+ +N EVIYGDTDS+MI+ N D VFK+GN+IKSE NKLYK LE+DIDG++
Sbjct: 1227 MHTKEMVQKMNLEVIYGDTDSIMINTNSTSLDEVFKLGNKIKSEVNKLYKLLEIDIDGIF 1286
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
K +LLLKKKKYAALS+ +GK + QE+KG+D+VRRDW LA + G +VI QIL +Q
Sbjct: 1287 KSLLLLKKKKYAALSVEPTGDGKYVTKQELKGLDIVRRDWCDLAKQTGNYVIGQILSDQP 1346
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + +I ++ +G +P EI + LTK P+
Sbjct: 1347 R-----DIIVENIQRRLMEIGENVVSGQIPANQFEINRALTKDPQ 1386
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 101/208 (48%), Positives = 138/208 (66%), Gaps = 14/208 (6%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL +V R ++LDA+ED + QPG ++LFGKV+++ ++ SCCV V+NI+R +Y
Sbjct: 571 LPLVNGESGDQVLRFYWLDAYEDQFSQPGVIFLFGKVWIESAATYVSCCVTVKNIERTVY 630
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR + +T+ PV+I V+ EF D I+ +YKI+ FKS+K+EK YAF +P VP
Sbjct: 631 LLPRETEIDLSTGKETETPVTIMSVFKEFNDTISPKYKIMKFKSKKVEKYYAFEIPDVPA 690
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEV+YSA+CP LP DL G TFSHVFGT TS LE LL+ +KIKGP WLE +
Sbjct: 691 KSEYLEVKYSAECPRLPQDLKGQTFSHVFGTNTSSLELLLMNQKIKGPCWLEIKNPQPSN 750
Query: 373 SRISWCKYEVQCNQMEKIRSKQGLIYLI 400
+SWCK +E + K GL+ ++
Sbjct: 751 PPVSWCK-------VEAVAMKPGLVNVV 771
Score = 56.2 bits (134), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K KYE VY+E+ E EY++ V RQ+DDWI DD G GYVEDGR
Sbjct: 250 ALERLKKAKA-GEKLKYEVEEFTGVYDEIDEDEYSKMVRDRQDDDWIVDDDGIGYVEDGR 308
Query: 165 EIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
EIFD+D++D K + K I N K
Sbjct: 309 EIFDEDLDDDALISNKKGRGGKTSTIDKKNVK 340
>gi|403263644|ref|XP_003924129.1| PREDICTED: DNA polymerase alpha catalytic subunit isoform 1 [Saimiri
boliviensis boliviensis]
Length = 1468
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 744 LLYLLEHTWIDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 803
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 804 ENNYIVPDKQIFRKSQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 863
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 864 LLDFNSLYPSIIQEFNICFTTVQRVAAEAQKITEDGEQEQIPE-LPDPNLEMGILPREIR 922
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 923 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 982
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 983 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1042
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + +G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1043 EIDIDGIFKSLLLLKKKKYAALVVEPTLDGNYVTKQELKGLDIVRRDWCDLAKDTGSFVI 1102
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1103 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1150
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 136/201 (67%), Gaps = 7/201 (3%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V++FGKV+++ +H SCC
Sbjct: 324 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFMFGKVWIESAETHVSCC 383
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T+ PVS+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 384 VMVKNIERTLYFLPREMKIDLNTGKETRTPVSMKDVYEEFDEKIATKYKIMKFKSKPVEK 443
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 444 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 503
Query: 362 WLEFPEAEKFPSRISWCKYEV 382
WLE + ISWCK E
Sbjct: 504 WLEVKSPQLLNQPISWCKVEA 524
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A +KLK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALEKLKKAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|403263646|ref|XP_003924130.1| PREDICTED: DNA polymerase alpha catalytic subunit isoform 2 [Saimiri
boliviensis boliviensis]
Length = 1462
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWIDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQIFRKSQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVAAEAQKITEDGEQEQIPE-LPDPNLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + +G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1037 EIDIDGIFKSLLLLKKKKYAALVVEPTLDGNYVTKQELKGLDIVRRDWCDLAKDTGSFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 136/201 (67%), Gaps = 7/201 (3%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V++FGKV+++ +H SCC
Sbjct: 318 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFMFGKVWIESAETHVSCC 377
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T+ PVS+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 378 VMVKNIERTLYFLPREMKIDLNTGKETRTPVSMKDVYEEFDEKIATKYKIMKFKSKPVEK 437
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 438 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 497
Query: 362 WLEFPEAEKFPSRISWCKYEV 382
WLE + ISWCK E
Sbjct: 498 WLEVKSPQLLNQPISWCKVEA 518
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A +KLK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALEKLKKAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|35568|emb|CAA29920.1| unnamed protein product [Homo sapiens]
Length = 1462
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/413 (58%), Positives = 316/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKK AY+GGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKGAYAGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1037 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 163/286 (56%), Gaps = 40/286 (13%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 318 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 377
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 378 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 437
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 438 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 497
Query: 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
WLE ++ +SWCK E M ++ ++
Sbjct: 498 WLEVKKSTALNQPVSWCKVE---------------------------AMALKPDLVNVIK 530
Query: 422 ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+++ PL + ++ +T+ ++ +NE + + A S+ L
Sbjct: 531 DVSPPPLVVMAFSM------KTMQNAKNHQNEIIAMAALVHHSFAL 570
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|380797015|gb|AFE70383.1| DNA polymerase alpha catalytic subunit, partial [Macaca mulatta]
Length = 1438
Score = 463 bits (1192), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 714 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 773
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 774 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 833
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 834 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 892
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 893 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 952
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 953 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1012
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + +S+G QE+KG+D+VRRDW LA + G FVI
Sbjct: 1013 EIDIDGIFKSLLLLKKKKYAALVVEPMSDGNYATKQELKGLDIVRRDWCDLAKDTGNFVI 1072
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1073 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1120
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 177/322 (54%), Gaps = 47/322 (14%)
Query: 154 DGGDGYVED-GREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVF 212
D G G + D GR + D D+ Q+ + + ++Q LPL + ++VF
Sbjct: 264 DSGKGTMSDLGRFLPDVSCWDIDQEGDS------SFSVQEVQVDSSQLPLVKGADEEQVF 317
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL----- 267
++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y LPR +
Sbjct: 318 HFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTG 377
Query: 268 -KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
+T PVS+ VY EFD+ IAT+YKI+ FKS+ +EK YAF +P VP+ SEYLEV+YSA+
Sbjct: 378 KETGTPVSMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVKYSAEI 437
Query: 326 PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 385
P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE + ISWCK E
Sbjct: 438 PQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPISWCKVE---- 493
Query: 386 QMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLM 445
M ++ ++ +++ PL + ++ +T+
Sbjct: 494 -----------------------AMALKPDLVNVIKDVSPPPLVVMAFSM------KTMQ 524
Query: 446 GGRSERNEFLLLHAFHEKSYVL 467
++ +NE + + A S+ L
Sbjct: 525 NAKNHQNEIIAVAALVHHSFAL 546
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 10 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 68
Query: 165 EIF 167
EIF
Sbjct: 69 EIF 71
>gi|334329499|ref|XP_001365174.2| PREDICTED: DNA polymerase alpha catalytic subunit [Monodelphis
domestica]
Length = 1462
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/412 (58%), Positives = 314/412 (76%), Gaps = 17/412 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T+ + +I++IMCELNVLPLA+QITN+ GNV+SRT+MGGRSERNEFLLLHAF+
Sbjct: 730 LMYLLENTLKDAKFILQIMCELNVLPLALQITNIAGNVMSRTMMGGRSERNEFLLLHAFY 789
Query: 462 EKSYVLPDKQYGKNKKE------GEETGEANKGK-GRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + ++ + G+ NK K GRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 790 ENNYIVPDKQNFRKPQQRLGDEDEDIDGDTNKSKKGRKKAAYAGGLVLDPKVGFYDKFIL 849
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEY-----LPEHQVDTGILPSEIKK 569
L+DFNSLYPSIIQE+NICFTT+ +D IT E LP+ ++ GILP EI+K
Sbjct: 850 LLDFNSLYPSIIQEFNICFTTVQRVASEDQKITEDEEQEDIPDLPDPDLEMGILPKEIRK 909
Query: 570 LVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVT 629
LVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT
Sbjct: 910 LVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVT 969
Query: 630 AKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK LE
Sbjct: 970 YKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKMLE 1029
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+DIDG++K +LLLKKKKYAAL + S+GK + QE+KG+D+VRRDW LA E G FVI
Sbjct: 1030 IDIDGIFKSLLLLKKKKYAALVVEPTSDGKYVTKQELKGLDIVRRDWCDLAKETGNFVIG 1089
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +Q+ D + NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1090 QILSDQNR-----DTIVDNIQKRLIEIGENVTNGSVPISKFEINKALTKDPQ 1136
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 101/192 (52%), Positives = 132/192 (68%), Gaps = 7/192 (3%)
Query: 198 DSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 257
+ LPL + +VF ++LDA+ED + QPG V+LFGKV+++ +H SCCV+V+NI+R
Sbjct: 319 NHLPLVKGADGDQVFLFYWLDAYEDQFNQPGVVFLFGKVWIESAETHVSCCVMVKNIERT 378
Query: 258 IYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGV 310
++LLPR + K PV++ VY EFD+ AT+YKI+ FKSRK+EK YAF +P V
Sbjct: 379 LHLLPREVRIDLATGEKKGNPVTMKDVYQEFDEKTATKYKIMKFKSRKVEKNYAFEIPDV 438
Query: 311 PDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEK 370
P+ SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ R+IKGP WLE +
Sbjct: 439 PEKSEYLEVRYSAELPQLPQDLKGETFSHVFGTNTSSLELFLMNRRIKGPCWLEIKNPQL 498
Query: 371 FPSRISWCKYEV 382
ISWCK E
Sbjct: 499 LNQPISWCKVEA 510
Score = 47.0 bits (110), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G + KYE +VY+EV E +Y+ V RQ+DDWI DD G GYVEDGR
Sbjct: 33 ALERLKKAKA-GERFKYEVEDFTSVYDEVDEDQYSRMVQARQDDDWIVDDDGTGYVEDGR 91
Query: 165 EIF 167
EIF
Sbjct: 92 EIF 94
>gi|355757246|gb|EHH60771.1| hypothetical protein EGM_18627 [Macaca fascicularis]
Length = 1468
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/413 (58%), Positives = 316/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 744 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 803
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 804 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 863
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 864 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 922
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 923 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 982
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 983 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1042
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + S+G QE+KG+D+VRRDW LA + G FVI
Sbjct: 1043 EIDIDGIFKSLLLLKKKKYAALVVEPTSDGNYATKQELKGLDIVRRDWCDLAKDTGNFVI 1102
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1103 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1150
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 177/322 (54%), Gaps = 47/322 (14%)
Query: 154 DGGDGYVED-GREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVF 212
D G G + D GR + D D+ Q+ + + ++Q LPL + ++VF
Sbjct: 294 DSGKGTMSDLGRFLPDVSCWDIDQEGDS------SFSVQEVQVDSSQLPLVKGADEEQVF 347
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL----- 267
++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y LPR +
Sbjct: 348 HFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTG 407
Query: 268 -KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
+T PVS+ VY EFD+ IAT+YKI+ FKS+ +EK YAF +P VP+ SEYLEV+YSA+
Sbjct: 408 KETGTPVSMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVKYSAEI 467
Query: 326 PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 385
P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE + ISWCK E
Sbjct: 468 PQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPISWCKVE---- 523
Query: 386 QMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLM 445
M ++ ++ +++ PL + ++ +T+
Sbjct: 524 -----------------------AMALKPDLVNVIKDVSPPPLVVMAFSM------KTMQ 554
Query: 446 GGRSERNEFLLLHAFHEKSYVL 467
++ +NE + + A S+ L
Sbjct: 555 NAKNHQNEIIAVAALVHHSFAL 576
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIADDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|335309430|ref|XP_001926748.3| PREDICTED: DNA polymerase alpha catalytic subunit, partial [Sus
scrofa]
Length = 701
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 245/432 (56%), Positives = 320/432 (74%), Gaps = 29/432 (6%)
Query: 387 MEKIRS----KQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSR 442
ME +R+ L+YL+ + T + +I++IMCELNVLPLA+QITN+ GN++SR
Sbjct: 140 MENVRNMYSESSHLLYLL------EHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSR 193
Query: 443 TLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE-------GEETGEANKGKGRKKAA 495
TLMGGRSERNEFLLLHAF+E +Y++PDKQ + ++ + + KGRKKAA
Sbjct: 194 TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEDIDGDASKYKKGRKKAA 253
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTL 549
YSGGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+ ++ +D + +
Sbjct: 254 YSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAEKVTEDGEQEQI 313
Query: 550 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
E LP+ ++ GILP EI+KLVE RRQVK LMKQP+L+ DL++QYDIRQKALKLTANSMY
Sbjct: 314 PE-LPDPGLEMGILPREIRKLVERRRQVKQLMKQPDLNPDLVLQYDIRQKALKLTANSMY 372
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 669
GCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N N +
Sbjct: 373 GCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSNSLEE 432
Query: 670 VFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGV 729
VFK+GN++KSE NKLYK LE+DIDG++K +LLLKKKKYAAL + S+G I QE+KG+
Sbjct: 433 VFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPTSDGNYITKQEVKGL 492
Query: 730 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
D++RRDW LA + G FVI QIL +QS D ++NI + + +I ++ NG VP++
Sbjct: 493 DIIRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQ 547
Query: 790 LEITKQLTKAPE 801
EI K LTK P+
Sbjct: 548 FEINKALTKDPQ 559
>gi|395518790|ref|XP_003763540.1| PREDICTED: DNA polymerase alpha catalytic subunit [Sarcophilus
harrisii]
Length = 1496
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/401 (60%), Positives = 308/401 (76%), Gaps = 17/401 (4%)
Query: 413 SSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY 472
+ +I++IMCELNVLPLA+QITN+ GNV+SRT+MGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 776 AKFILQIMCELNVLPLALQITNIAGNVMSRTMMGGRSERNEFLLLHAFYENNYIVPDKQN 835
Query: 473 GKNKKE------GEETGEANKGK-GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSI 525
+ ++ + G+ANK K GRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSI
Sbjct: 836 FRKPQQRLGDEDEDIDGDANKSKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSI 895
Query: 526 IQEYNICFTTIPVRMLQDSDITTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKAL 580
IQE+NICFTT+ +D IT E LP+ ++ GILP EI+KLVE R+QVK L
Sbjct: 896 IQEFNICFTTVQRVASEDQKITEDEEQENIPDLPDPDLEMGILPKEIRKLVERRKQVKQL 955
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK
Sbjct: 956 MKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTYKGREILMHTK 1015
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
+V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE N+LYK LE+DIDG++K +L
Sbjct: 1016 EMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNRLYKMLEIDIDGIFKSLL 1075
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
LLKKKKYAAL + S+GK I QE+KG+D+VRRDW LA E G FVI QIL +Q+
Sbjct: 1076 LLKKKKYAALVVEPTSDGKYITKQELKGLDIVRRDWCDLAKETGNFVIGQILSDQNR--- 1132
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D + NI + + +I + NG VP++ EI K LTK P+
Sbjct: 1133 --DTIVDNIQKRLIEIGESVMNGSVPISQFEINKALTKDPQ 1171
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 110/203 (54%), Positives = 139/203 (68%), Gaps = 9/203 (4%)
Query: 189 NIQNPNAKDDS--LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSS 246
+IQ + DS LPL + +VF ++LDA+ED Y QPG V+LFGKV+++ +H S
Sbjct: 343 SIQTQEIQVDSNRLPLVKGTDGDQVFLFYWLDAYEDQYNQPGVVFLFGKVWIEPAETHVS 402
Query: 247 CCVIVQNIDRKIYLLPRSEH--LKTKE----PVSIAQVYSEFDQ-IATQYKILDFKSRKI 299
CCV+V+NI+R +YLLPR E L T E PV++ VY EFD+ AT+YKI+ FKS+K+
Sbjct: 403 CCVLVKNIERTLYLLPREEQIDLTTGEKKGIPVTMKDVYQEFDEKTATKYKIMKFKSKKV 462
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKG 359
EK YAF +P VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKG
Sbjct: 463 EKNYAFEIPDVPEKSEYLEVRYSAELPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKG 522
Query: 360 PSWLEFPEAEKFPSRISWCKYEV 382
P WLE + ISWCK E
Sbjct: 523 PCWLEIKNPQLLNQPISWCKVEA 545
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K KYE +VY+EV E +Y+ V RQ+DDWI DD G GYVEDGR
Sbjct: 35 ALERLKKTKA-GEKFKYEVEDFTSVYDEVDEDQYSRMVQARQDDDWIVDDDGIGYVEDGR 93
Query: 165 EIFDDDIED 173
EIFD++++D
Sbjct: 94 EIFDEELDD 102
>gi|312377574|gb|EFR24380.1| hypothetical protein AND_11087 [Anopheles darlingi]
Length = 1597
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 247/444 (55%), Positives = 329/444 (74%), Gaps = 24/444 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+++ + TM + YI+++MCELNVLPLA+QIT + GN+++RTL GGR+ERNEFLLLHAF
Sbjct: 801 SLIQLVGLTMQDNFYILRLMCELNVLPLALQITQIAGNLMNRTLHGGRAERNEFLLLHAF 860
Query: 461 HEKSYVLPDKQY------GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
+E+ Y+LPDK G K + A+K K + KAAY+GGLVL+P KGFYDKF++
Sbjct: 861 NERDYILPDKANPFQSGGGPKGKGADGGDGADKRKPKNKAAYAGGLVLDPIKGFYDKFVL 920
Query: 515 LMDFNSLYPSIIQEYNICFTTI--PVRMLQDSDITTLCEYLPEHQVD--------TGILP 564
LMDFNSLYPSIIQEYNICFTT+ PV + +D + PE + GILP
Sbjct: 921 LMDFNSLYPSIIQEYNICFTTVLPPVVGKELNDGQEEGQLNPELVAEPTILATNEIGILP 980
Query: 565 SEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPL 624
+I+KLVESRR VK LMK P+L+ +L MQY+IRQ ALKLTANS+YGCLG+ SRF+AQ L
Sbjct: 981 RQIRKLVESRRAVKQLMKAPDLTPELAMQYNIRQMALKLTANSLYGCLGYTRSRFYAQHL 1040
Query: 625 AALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKL 684
A+L+T KGREILLNTKS+VE +NY+VIYGDTDS+MI+ N+ DY+ VFKIG IK NK
Sbjct: 1041 ASLITQKGREILLNTKSIVERMNYQVIYGDTDSIMINTNITDYEQVFKIGASIKQHVNKT 1100
Query: 685 YKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAG 744
Y+ LELD+DG+YKY+LLLKKKKYAA++ISK ++G+++C+QE+KG+D+VRRDWS++A AG
Sbjct: 1101 YRCLELDVDGIYKYLLLLKKKKYAAVTISKKADGEIVCAQELKGLDIVRRDWSRVAVMAG 1160
Query: 745 KFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA----P 800
K ++ QIL +D S+DDR+ NIH ++K++ DL G + L LLEITKQLT++
Sbjct: 1161 KIILHQILS----SDASMDDRIGNIHVQLEKLKDDLQAGTLSLHLLEITKQLTRSLNEYG 1216
Query: 801 EGGKVCITQIRLSRNRRGRRRRRR 824
+ G++ Q+ L NR+ R +R
Sbjct: 1217 DAGQLPHVQVALRMNRQRNRNYKR 1240
Score = 154 bits (390), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 114/184 (61%), Gaps = 6/184 (3%)
Query: 205 DHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVK-ENNSHSSCCVIVQNIDRKIYLLPR 263
D V + +F DA+ D K G +YLFG+V V + N++ S CV VQN+DR ++LL R
Sbjct: 403 DTAGSDVMKFWFWDAWNDPNKCQGELYLFGRVAVAGKRNAYQSICVHVQNVDRCLFLLAR 462
Query: 264 SEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPG----VPDLSEYLE 318
+ KT +PVS+ +VY+EF + I+ + I ++SR + K +A+ VP SEYLE
Sbjct: 463 EQDAKTGQPVSMLEVYNEFSNDISNKLNIAKYRSRVVTKSFAYTSATSSLQVPVSSEYLE 522
Query: 319 VRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWC 378
VRYSAK P P D T +H+FGT T+ +E LLERK+KGP W+E A + ++ SWC
Sbjct: 523 VRYSAKLPPPPLDRRYRTIAHIFGTNTNVVEQFLLERKVKGPCWMELRGATQRETKTSWC 582
Query: 379 KYEV 382
K EV
Sbjct: 583 KLEV 586
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 77/125 (61%), Gaps = 11/125 (8%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDK +FAA ++LK K GVK+KYE ENVY+EV E+EY + V +R DDW++DD G
Sbjct: 20 IDKGGRFAALERLKKTKEAGVKNKYEVNEVENVYDEVDEREYAKIVNQRMHDDWVEDDDG 79
Query: 157 DGYVEDGREIFD-DDIEDVPQ----KKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKV 211
GYVE+GREIFD D+++ +P K + D+RK K ++ DS P A +K
Sbjct: 80 LGYVENGREIFDEDELDPLPSSNKGKGKGKDERKGTKRVR------DSDPTAGPVTGRKS 133
Query: 212 FRMFF 216
+ +F
Sbjct: 134 LKNYF 138
>gi|402909736|ref|XP_003917565.1| PREDICTED: DNA polymerase alpha catalytic subunit [Papio anubis]
Length = 1465
Score = 460 bits (1184), Expect = e-126, Method: Compositional matrix adjust.
Identities = 240/413 (58%), Positives = 316/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 741 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 800
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ +K KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 801 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTSKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 860
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 861 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 919
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 920 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 979
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 980 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1039
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + S+G QE+KG+D+VRRDW LA + G FVI
Sbjct: 1040 EIDIDGIFKSLLLLKKKKYAALVVEPTSDGNYATKQELKGLDIVRRDWCDLAKDTGNFVI 1099
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1100 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1147
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/322 (37%), Positives = 177/322 (54%), Gaps = 47/322 (14%)
Query: 154 DGGDGYVED-GREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVF 212
D G G + D GR + D D+ Q+ + + ++Q LPL + ++VF
Sbjct: 291 DSGKGTMSDLGRFLPDVSCWDIDQEGDS------SFSVQEVQVDSSQLPLVKGADEEQVF 344
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL----- 267
++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y LPR +
Sbjct: 345 HFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCCVMVKNIERTLYFLPREMKIDLNTG 404
Query: 268 -KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
+T PVS+ VY EFD+ IAT+YKI+ FKS+ +EK YAF +P VP+ SEYLEV+YSA+
Sbjct: 405 KETGTPVSMKDVYEEFDEKIATKYKIMKFKSKPVEKNYAFEIPDVPEKSEYLEVKYSAEI 464
Query: 326 PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 385
P LP DL G+TFSH+FGT TS LE L+ RKIKGP WLE + ISWCK E
Sbjct: 465 PQLPQDLKGETFSHIFGTNTSSLELFLMNRKIKGPCWLEVKSPQLLNQPISWCKVE---- 520
Query: 386 QMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLM 445
M ++ ++ +++ PL + ++ +T+
Sbjct: 521 -----------------------AMALKPDLVNVIKDVSPPPLVVMAFSM------KTMQ 551
Query: 446 GGRSERNEFLLLHAFHEKSYVL 467
++ +NE + + A S+ L
Sbjct: 552 NAKNHQNEIIAVAALVHHSFAL 573
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 37 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 95
Query: 165 EIF 167
EIF
Sbjct: 96 EIF 98
>gi|431895111|gb|ELK04902.1| DNA polymerase alpha catalytic subunit [Pteropus alecto]
Length = 1483
Score = 460 bits (1183), Expect = e-126, Method: Compositional matrix adjust.
Identities = 247/432 (57%), Positives = 323/432 (74%), Gaps = 29/432 (6%)
Query: 387 MEKIRS----KQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSR 442
ME +R+ L+YL+ + T + +I++IMCELNVLPLA+QITN+ GN++SR
Sbjct: 752 MENVRNMYSEPSHLLYLL------EHTWKDARFILQIMCELNVLPLALQITNIAGNIMSR 805
Query: 443 TLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAA 495
TLMGGR+ERNEFLLLHAF+E +Y++PDKQ + +K G+E G+ NK KGRKKAA
Sbjct: 806 TLMGGRAERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEIDGDNNKYKKGRKKAA 865
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTL 549
Y+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+ ++ +D + +
Sbjct: 866 YAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDEEQEQI 925
Query: 550 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
E LP+ +D GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMY
Sbjct: 926 PE-LPDPSLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMY 984
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 669
GCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + +
Sbjct: 985 GCLGFSFSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEE 1044
Query: 670 VFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGV 729
VFK+GN++KSE NKLYK LE+DIDG++K +LLLKKKKYAAL + S+G QE+KG+
Sbjct: 1045 VFKLGNKVKSEVNKLYKLLEIDIDGIFKSLLLLKKKKYAALVVEPTSDGNYSTKQELKGL 1104
Query: 730 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
D+VRRDW LA + G FVI QIL +QS D ++NI + + +I ++ NG VP++
Sbjct: 1105 DIVRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQ 1159
Query: 790 LEITKQLTKAPE 801
EI K LTK P+
Sbjct: 1160 FEINKALTKDPQ 1171
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 158/277 (57%), Gaps = 40/277 (14%)
Query: 198 DSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 257
D LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R
Sbjct: 354 DHLPLVKGADEEQVFQFYWLDAYEDQYNQPGVVFLFGKVWIESAKTHVSCCVMVKNIERT 413
Query: 258 IYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGV 310
+Y LPR + +T PV++ VY EFD+ IA +YKI+ FKS+ +EK YAF +P +
Sbjct: 414 LYFLPRETKIDLNTGKETGTPVTMKDVYDEFDEKIAAKYKIMKFKSKIVEKNYAFEIPDI 473
Query: 311 PDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEK 370
P+ SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 474 PEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQL 533
Query: 371 FPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAI 430
SWCK E M ++ +M ++ PL +
Sbjct: 534 SNQPFSWCKVE---------------------------AMALKPDLVNVMMDVGPPPLVV 566
Query: 431 QITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
++ +T+ ++ +NE + + A S+ L
Sbjct: 567 MSFSM------KTMQNAKTHQNEIIAVAALVHYSFAL 597
Score = 53.1 bits (126), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 30/92 (32%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDD---------- 154
A ++LK K G K+KYE +VYEE+ E++Y++ V RQ+DDWI DD
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDFTSVYEEIDEEQYSKLVQARQDDDWIVDDVSWYSKHTIK 92
Query: 155 -------------------GGDGYVEDGREIF 167
G GYVEDGREIF
Sbjct: 93 HPIVANFDAVDQIVSLADLDGIGYVEDGREIF 124
>gi|301782577|ref|XP_002926706.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Ailuropoda
melanoleuca]
Length = 1461
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/432 (56%), Positives = 321/432 (74%), Gaps = 29/432 (6%)
Query: 387 MEKIRS----KQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSR 442
ME +R+ L+YL+ + T + +I++IMCELNVLPLA+QITN+ GN++SR
Sbjct: 725 MENVRNMYSESSHLLYLL------EHTWKDARFILQIMCELNVLPLALQITNIAGNIMSR 778
Query: 443 TLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE------GEETGEANK-GKGRKKAA 495
TLMGGRSERNEFLLLHAF+E +Y++PDKQ + ++ + G+ANK KGRKKAA
Sbjct: 779 TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEDIDGDANKYKKGRKKAA 838
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTL 549
Y+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+ ++ +D + +
Sbjct: 839 YAGGLVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASETQKITEDGEQEQI 898
Query: 550 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMY
Sbjct: 899 PE-LPDPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMY 957
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 669
GCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N D +
Sbjct: 958 GCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTDLEE 1017
Query: 670 VFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGV 729
V+K+GN++KSE NKLYK LE+DIDGV+K +LLLKKKKY AL + S+G QE+KG+
Sbjct: 1018 VYKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVEPTSDGNYSTKQELKGL 1077
Query: 730 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
D+VRRDW LA E G FVI QIL +QS D ++NI + + +I ++ NG VP++
Sbjct: 1078 DIVRRDWCDLAKETGNFVIGQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQ 1132
Query: 790 LEITKQLTKAPE 801
EI K LTK P+
Sbjct: 1133 FEINKALTKDPQ 1144
Score = 213 bits (541), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 133/190 (70%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCC++V+NI+R +Y
Sbjct: 329 LPLVKGTDEEQVFQFYWLDAYEDQYNQPGVVFLFGKVWIESAKTHVSCCLMVKNIERTLY 388
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + +T+ PV++ VY EFD+ IA +YKI+ FKS+ +EK YAF +P VP+
Sbjct: 389 FLPRETKIDLNTGKETETPVTMKDVYDEFDEKIAAKYKIMKFKSKPVEKNYAFEIPDVPE 448
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKI+GP WLE +
Sbjct: 449 KSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLEMFLMNRKIRGPCWLEVKNPQLLN 508
Query: 373 SRISWCKYEV 382
+SWCK E
Sbjct: 509 HPVSWCKVEA 518
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|395838110|ref|XP_003791967.1| PREDICTED: DNA polymerase alpha catalytic subunit [Otolemur
garnettii]
Length = 1461
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 245/430 (56%), Positives = 318/430 (73%), Gaps = 26/430 (6%)
Query: 387 MEKIRS----KQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSR 442
ME IR+ L+YL+ + T + +I++IMCELNVLPLA+QITN+ GN++SR
Sbjct: 725 MENIRNMYSESSHLLYLL------EHTWKDARFILQIMCELNVLPLALQITNIAGNIMSR 778
Query: 443 TLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN--KKEGEET----GEANKGKGRKKAAY 496
TLMGGRSERNEFLLLHAF+E +Y++PDKQ + +K G+E G+ KGRKKAAY
Sbjct: 779 TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPPQKLGDEDEEIDGDTKYKKGRKKAAY 838
Query: 497 SGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEY---- 552
+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+ L+ T E
Sbjct: 839 AGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVALEAKKATEDVEQEQIP 898
Query: 553 -LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGC 611
LP+ ++ GILP EI+KLVE R+QV+ LMKQ +L+ DLL+QYDIRQKALKLTANSMYGC
Sbjct: 899 ELPDPGLEMGILPREIRKLVERRKQVRQLMKQQDLNPDLLLQYDIRQKALKLTANSMYGC 958
Query: 612 LGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVF 671
LGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VF
Sbjct: 959 LGFSFSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVF 1018
Query: 672 KIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDV 731
K+GN++K+E NKLYK LE+DIDGV+K +LLLKKKKYAAL + S+G QE+KG+D+
Sbjct: 1019 KLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYFTKQELKGLDI 1078
Query: 732 VRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 791
+RRDW LA + G FVI QIL +QS D +++I + + +I ++ NG VP++ E
Sbjct: 1079 IRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVESIQKRLMEIGENVLNGCVPVSQFE 1133
Query: 792 ITKQLTKAPE 801
I K LTK P+
Sbjct: 1134 INKALTKDPQ 1143
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/190 (53%), Positives = 132/190 (69%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y
Sbjct: 329 LPLVKGADEEQVFQFYWLDAYEDQYNQPGVVFLFGKVWIESAKTHVSCCVMVKNIERTLY 388
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + +T PV+I VY EFD+ IA +YKI+ FKS+ +EK YAF +P VP+
Sbjct: 389 FLPRETKIDRNTGKETGTPVAIKDVYDEFDEKIAAKYKIMKFKSKIVEKNYAFEIPDVPE 448
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 449 KSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMSRKIKGPCWLEVKNPQLLN 508
Query: 373 SRISWCKYEV 382
ISWCK E
Sbjct: 509 QPISWCKVEA 518
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKFKYEVEDFASVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|3551068|dbj|BAA32745.1| DNA polymerase alpha 180K subunit [Drosophila melanogaster]
Length = 1415
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/434 (54%), Positives = 313/434 (72%), Gaps = 22/434 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHA
Sbjct: 759 SITKLISLTMQDNSYLLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAS 818
Query: 461 HEKSYVLPDKQ-----YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIIL 515
EK+Y++PDK+ G + +G + +KKAAY+GGLVLEP +G Y+K+++L
Sbjct: 819 TEKNYIVPDKKPVSKRSGAGDTDRTLSGADATMQTKKKAAYAGGLVLEPMRGLYEKYVLL 878
Query: 516 MDFNSLYPSIIQEYNICFTTIPVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVESR 574
MD NSLYPSIIQEYNICF PV+ D+D + TL P+ + + GILP ++K+LVESR
Sbjct: 879 MDLNSLYPSIIQEYNICFN--PVQQPVDADELPTL----PDSKTEPGILPLQLKRLVESR 932
Query: 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
++VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KGR+
Sbjct: 933 KEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGRD 992
Query: 635 ILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDG 694
L NT+ LV+ +NY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQLELDIDG
Sbjct: 993 -LTNTQQLVQKMNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLELDIDG 1051
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
V+ +LLLKKKKYAA+ +SK S G + QE KG+D+VRRDWSQLA GK V+ ++L E
Sbjct: 1052 VFGCLLLLKKKKYAAIKLSKDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSE 1111
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQI 810
+ L+++L +H ++KI+T + G VPL L ITKQLT+ P+ + Q+
Sbjct: 1112 K-----PLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQDYRNSASLPHVQV 1166
Query: 811 RLSRNRRGRRRRRR 824
L NR RR ++
Sbjct: 1167 ALRMNRERNRRYKK 1180
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 16/182 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R+++ +A+ED K PG V+LFG+ S C+ VQNI+R +YLLPR L
Sbjct: 362 LRLWYWEAYEDPVKIPGQVFLFGRT-----ADGKSVCLRVQNINRVLYLLPRQFLLDPIS 416
Query: 268 --KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYS 322
TK+ V++A +Y EFD ++A Q K+ F+SRK+ K +A + G VP +YLEV Y
Sbjct: 417 KEPTKQKVTVADIYKEFDSEVANQLKLEFFRSRKVTKSFAHHAIGIEVPQSCDYLEVHYD 476
Query: 323 AK--CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
P L +D ++ +H+FG T+ LE LL+RKIKGP WL+ + P+ +SWC
Sbjct: 477 GNKPLPNLSADKKYNSIAHIFGATTNALERFLLDRKIKGPCWLQVTGFKVSPTPMSWCNT 536
Query: 381 EV 382
EV
Sbjct: 537 EV 538
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DK +FAA ++L+ LKG K K E ++VY+ V E+EY +R ++ DDWI++DG
Sbjct: 15 VDKNGRFAAMERLRQLKGTKNKCKVE-DQVDDVYDVVDEREYAKRAQEKYGDDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
GY ED R+ F+D+ E ++++ D +KK K + PN+K
Sbjct: 74 -GYAEDLRDFFEDEDEYSDGEEDRKDSKKK-KGVA-PNSK 110
>gi|281350001|gb|EFB25585.1| hypothetical protein PANDA_016394 [Ailuropoda melanoleuca]
Length = 1459
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/432 (56%), Positives = 321/432 (74%), Gaps = 29/432 (6%)
Query: 387 MEKIRS----KQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSR 442
ME +R+ L+YL+ + T + +I++IMCELNVLPLA+QITN+ GN++SR
Sbjct: 724 MENVRNMYSESSHLLYLL------EHTWKDARFILQIMCELNVLPLALQITNIAGNIMSR 777
Query: 443 TLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE------GEETGEANK-GKGRKKAA 495
TLMGGRSERNEFLLLHAF+E +Y++PDKQ + ++ + G+ANK KGRKKAA
Sbjct: 778 TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEDIDGDANKYKKGRKKAA 837
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTL 549
Y+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+ ++ +D + +
Sbjct: 838 YAGGLVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASETQKITEDGEQEQI 897
Query: 550 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMY
Sbjct: 898 PE-LPDPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMY 956
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 669
GCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N D +
Sbjct: 957 GCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTDLEE 1016
Query: 670 VFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGV 729
V+K+GN++KSE NKLYK LE+DIDGV+K +LLLKKKKY AL + S+G QE+KG+
Sbjct: 1017 VYKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVEPTSDGNYSTKQELKGL 1076
Query: 730 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
D+VRRDW LA E G FVI QIL +QS D ++NI + + +I ++ NG VP++
Sbjct: 1077 DIVRRDWCDLAKETGNFVIGQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQ 1131
Query: 790 LEITKQLTKAPE 801
EI K LTK P+
Sbjct: 1132 FEINKALTKDPQ 1143
Score = 213 bits (541), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 133/190 (70%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCC++V+NI+R +Y
Sbjct: 328 LPLVKGTDEEQVFQFYWLDAYEDQYNQPGVVFLFGKVWIESAKTHVSCCLMVKNIERTLY 387
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + +T+ PV++ VY EFD+ IA +YKI+ FKS+ +EK YAF +P VP+
Sbjct: 388 FLPRETKIDLNTGKETETPVTMKDVYDEFDEKIAAKYKIMKFKSKPVEKNYAFEIPDVPE 447
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKI+GP WLE +
Sbjct: 448 KSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLEMFLMNRKIRGPCWLEVKNPQLLN 507
Query: 373 SRISWCKYEV 382
+SWCK E
Sbjct: 508 HPVSWCKVEA 517
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 33 ALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 91
Query: 165 EIF 167
EIF
Sbjct: 92 EIF 94
>gi|348561319|ref|XP_003466460.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase alpha catalytic
subunit-like [Cavia porcellus]
Length = 1472
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/413 (58%), Positives = 315/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 744 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 803
Query: 462 EKSYVLPDKQYGK--NKKEGEE----TGEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ +K KGRKKAAYSGGLVL+PK GFYDKFI+
Sbjct: 804 ENNYIVPDKQIFRKPQQKLGDEEEEIDGDTSKYKKGRKKAAYSGGLVLDPKVGFYDKFIL 863
Query: 515 LMDFNSLYPSIIQEYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ + +D + + E LP+ ++ GILP EI+
Sbjct: 864 LLDFNSLYPSIIQEFNICFTTVQRVASELQKAAEDGEEEQIPE-LPDASLEMGILPREIR 922
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 923 KLVERRKQVKQLMKQQDLNPDLALQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 982
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 983 TFKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1042
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1043 EIDIDGVFKSLLLLKKKKYAALVVEPASDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1102
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +Q+ D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1103 GQILSDQNR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1150
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/190 (53%), Positives = 132/190 (69%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + +VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y
Sbjct: 335 LPLVKGADEDQVFQFYWLDAYEDQYNQPGVVFLFGKVWIESAKTHVSCCVMVKNIERMLY 394
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + +T PV++ VY EFD+ IA +YKI+ FKS+ +EK YAF +P VP+
Sbjct: 395 FLPREMKIDSNTGKETGTPVTMKDVYDEFDERIANKYKIMKFKSKVLEKNYAFEIPDVPE 454
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 455 KSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLN 514
Query: 373 SRISWCKYEV 382
ISWCK+E
Sbjct: 515 QPISWCKFEA 524
Score = 47.0 bits (110), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EI 166
EI
Sbjct: 99 EI 100
>gi|291407253|ref|XP_002720044.1| PREDICTED: DNA-directed DNA polymerase alpha 1 [Oryctolagus
cuniculus]
Length = 1469
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/412 (58%), Positives = 313/412 (75%), Gaps = 18/412 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNEFLLLHAF+
Sbjct: 746 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEFLLLHAFY 805
Query: 462 EKSYVLPDKQYGKNKK-----EGEETGEANK-GKGRKKAAYSGGLVLEPKKGFYDKFIIL 515
E +Y++PDKQ + + E E G+ +K KGR+KAAY+GGLVL+PK GFYDKF++L
Sbjct: 806 ENNYIVPDKQIFRKPQQKLGDEDEMDGDTDKYKKGRRKAAYAGGLVLDPKVGFYDKFVLL 865
Query: 516 MDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKK 569
+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+K
Sbjct: 866 LDFNSLYPSIIQEFNICFTTVQRVVSEAQKVTEDGEQEQIPE-LPDPGLEMGILPREIRK 924
Query: 570 LVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVT 629
LVE R+ VK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT
Sbjct: 925 LVERRKHVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVT 984
Query: 630 AKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN+IK+E NKLYK LE
Sbjct: 985 YKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKIKNEVNKLYKLLE 1044
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+DIDGV+K +LLLKKKKYAAL + S+G I QE+KG+D+VRRDW LA + G FVI
Sbjct: 1045 IDIDGVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIG 1104
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP+ EI K LTK P+
Sbjct: 1105 QILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVNQFEINKALTKDPQ 1151
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 158/275 (57%), Gaps = 40/275 (14%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV V+NI+R +Y
Sbjct: 337 LPLVKGADEEQVFQFYWLDAYEDQYNQPGVVFLFGKVWIESAKTHVSCCVTVKNIERTLY 396
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + +T V++ VY EFD+ IAT+Y+I+ FKS+ +EK YAF +P VP+
Sbjct: 397 FLPREMKMDLNTEKETGTSVTMKDVYDEFDEKIATKYRIMKFKSKIVEKNYAFEVPDVPE 456
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 457 KSEYLEVRYSAELPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLN 516
Query: 373 SRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQI 432
+SWCK E M ++ ++ +++ PL +
Sbjct: 517 QSVSWCKVE---------------------------AMALKPDLVNVVKDVSPPPLVVMS 549
Query: 433 TNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
++ +T+ +S +NE + + A S+ L
Sbjct: 550 FSM------KTMQNAKSHQNEIIAVAALVHHSFAL 578
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|405964566|gb|EKC30035.1| DNA polymerase alpha catalytic subunit [Crassostrea gigas]
Length = 1492
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 249/427 (58%), Positives = 329/427 (77%), Gaps = 21/427 (4%)
Query: 411 LHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK 470
+ S+YI++I+ ELNVLPLA+QIT++CGNV++RTL+GGRSERNE+LLLHAF EK++++PDK
Sbjct: 774 MDSTYILRILYELNVLPLALQITSICGNVMTRTLLGGRSERNEYLLLHAFTEKNFIVPDK 833
Query: 471 QYGK-------NKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYP 523
+Y K + E E+ G+ K GR+K AY+GGLVL+PKKGFYDK+I+L+DFNSLYP
Sbjct: 834 EYKKTVVKEAIDDDEAEDGGKGGKSSGRRKPAYAGGLVLDPKKGFYDKYILLLDFNSLYP 893
Query: 524 SIIQEYNICFTTIPVRMLQDSDIT---TLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
SIIQEYNICFTT+ +Q SD + E LP+ ++ GILP+EI+KLVESRRQVK L
Sbjct: 894 SIIQEYNICFTTVSRNAVQQSDKDDEEAIIE-LPDKDLEPGILPTEIRKLVESRRQVKQL 952
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK ++S++ MQYDIRQKALKLTANSMYGCLGF +SRFFA+PLAAL+TAKGREIL+ TK
Sbjct: 953 MKG-DISNEQYMQYDIRQKALKLTANSMYGCLGFSHSRFFAKPLAALITAKGREILMKTK 1011
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
LV+++N +VIYGDTDS+MI+ N ND D+V+K+GN++KSE NKLYK LE+DIDGV+K ML
Sbjct: 1012 DLVQSMNLDVIYGDTDSIMINTNCNDIDAVYKVGNKVKSEVNKLYKLLEIDIDGVFKSML 1071
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
LLKKKKYAALS+SK +GK + +E+KG+D+VRRDWS LA EAG FV+ QIL ++
Sbjct: 1072 LLKKKKYAALSVSKGPDGKYVEHKELKGLDIVRRDWSDLAKEAGNFVVEQILSGETR--- 1128
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG----GKVCITQIRLSRNR 816
+ ++NIH + ++ + NG +P+ L ITKQLTK PE + Q+ L N
Sbjct: 1129 --ETIVENIHSKLMEVGEKVRNGDIPIELYYITKQLTKNPEDYPDKKSLPHVQVALRVNS 1186
Query: 817 RGRRRRR 823
+G ++ +
Sbjct: 1187 KGGKKMK 1193
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 116/304 (38%), Positives = 173/304 (56%), Gaps = 39/304 (12%)
Query: 179 EKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFV 238
EK+ + +++ LPL T ++V R ++LDA+ED Y PGTVYLFGKV++
Sbjct: 329 EKYQNDSQEESVAEVKVDTSELPLVTSSNGEQVLRFYWLDAYEDPYSSPGTVYLFGKVWI 388
Query: 239 KENNSHSSCCVIVQNIDRKIYLLPRS--EHLK----TKEPVSIAQVYSEFDQ-IATQYKI 291
++ + SCCV V+NI+R+IY+LPRS ++LK T VS+ VYSEF++ IA ++KI
Sbjct: 389 EKAKVYVSCCVTVKNIERRIYVLPRSTRKNLKSGSDTGIDVSMVDVYSEFNEKIAEKFKI 448
Query: 292 LDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENL 351
FKS+K+ K+YAF VP S+YLE+R+ A+ P LP DL G+TF+HVFGT TS LE L
Sbjct: 449 PKFKSKKVTKQYAFEKVDVPVESDYLEIRFGAEIPPLPRDLEGETFNHVFGTHTSCLELL 508
Query: 352 LLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTML 411
L++ K+KGP WL+ + ++SWCK EV ++ E L+ +V + T
Sbjct: 509 LIDSKMKGPGWLDIKLPQIVNPQVSWCKIEVSISKPE----------LLSVVNDQQLT-- 556
Query: 412 HSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ 471
PL + N+ RTL ++ +NE + ++S+ + DK
Sbjct: 557 -------------PPPLVVMTLNL------RTLPNHKNHQNEIVAATCLVQESFSI-DKP 596
Query: 472 YGKN 475
KN
Sbjct: 597 APKN 600
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 71/102 (69%), Gaps = 3/102 (2%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
D+ + AA ++LK +K G KHKY+ ++NVY+ V+E EY+E V +RQ+DDWI DD G
Sbjct: 34 DRGGRSAALERLKKVKETGEKHKYDVEEEKNVYDIVNEDEYSEIVRQRQDDDWIVDDDGA 93
Query: 158 GYVEDGREIFDDDIEDVP---QKKEKHDKRKKNKNIQNPNAK 196
GYVEDGREIFDDD+ + P + K++ K+ KN NI P +K
Sbjct: 94 GYVEDGREIFDDDLNEEPGANKGKKEEKKKSKNPNIVRPGSK 135
>gi|217344|dbj|BAA14340.1| DNA polymerase alpha [Drosophila melanogaster]
Length = 1505
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/434 (54%), Positives = 313/434 (72%), Gaps = 22/434 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHA
Sbjct: 759 SITKLISLTMQDNSYLLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAS 818
Query: 461 HEKSYVLPDKQ-----YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIIL 515
EK+Y++PDK+ G + +G + +KKAAY+GGLVLEP +G Y+K+++L
Sbjct: 819 TEKNYIVPDKKPVSKRSGAGDTDRTLSGADATMQTKKKAAYAGGLVLEPMRGLYEKYVLL 878
Query: 516 MDFNSLYPSIIQEYNICFTTIPVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVESR 574
MD NSLYPSIIQEYNICF PV+ D+D + TL P+ + + GILP ++K+LVESR
Sbjct: 879 MDLNSLYPSIIQEYNICFN--PVQQPVDADELPTL----PDSKTEPGILPLQLKRLVESR 932
Query: 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
++VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KGR+
Sbjct: 933 KEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKGRD 992
Query: 635 ILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDG 694
L NT+ LV+ +NY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQLELDIDG
Sbjct: 993 -LTNTQQLVQKMNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLELDIDG 1051
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
V+ +LLLKKKKYAA+ +SK S G + QE KG+D+VRRDWSQLA GK V+ ++L E
Sbjct: 1052 VFGCLLLLKKKKYAAIKLSKDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVLSE 1111
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQI 810
+ L+++L +H ++KI+T + G VPL L ITKQLT+ P+ + Q+
Sbjct: 1112 K-----PLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQDYRNSASLPHVQV 1166
Query: 811 RLSRNRRGRRRRRR 824
L NR RR ++
Sbjct: 1167 ALRMNRERNRRYKK 1180
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/182 (40%), Positives = 107/182 (58%), Gaps = 16/182 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R+++ +A+ED K PG V+LFG+ S C+ VQNI+R +YLLPR L
Sbjct: 362 LRLWYWEAYEDPVKIPGQVFLFGRT-----ADGKSVCLRVQNINRVLYLLPRQFLLDPIS 416
Query: 268 --KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYS 322
TK+ V++A +Y EFD ++A Q K+ F+SRK+ K +A + G VP +YLEV Y
Sbjct: 417 KEPTKQKVTVADIYKEFDSEVANQLKLEFFRSRKVTKSFAHHAIGIEVPQSCDYLEVHYD 476
Query: 323 AK--CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
P L +D ++ +H+FG T+ LE LL+RKIKGP WL+ + P+ +SWC
Sbjct: 477 GNKPLPNLSADKKYNSIAHIFGATTNALERFLLDRKIKGPCWLQVTGFKVSPTPMSWCNT 536
Query: 381 EV 382
EV
Sbjct: 537 EV 538
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DK +FAA ++L+ LKG K K E ++VY+ V E+EY +R ++ DDWI++DG
Sbjct: 15 VDKNGRFAAMERLRQLKGTKNKCKVE-DQVDDVYDVVDEREYAKRAQEKYGDDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
GY ED R+ F+D+ E ++++ D +KK K + PN+K
Sbjct: 74 -GYAEDLRDFFEDEDEYSDGEEDRKDSKKK-KGVA-PNSK 110
>gi|6679409|ref|NP_032918.1| DNA polymerase alpha catalytic subunit [Mus musculus]
gi|544185|sp|P33609.2|DPOLA_MOUSE RecName: Full=DNA polymerase alpha catalytic subunit; AltName:
Full=DNA polymerase alpha catalytic subunit p180
gi|442471|dbj|BAA04202.1| DNA polymerase alpha catalytic subunit p180 [Mus musculus]
gi|475159|dbj|BAA40003.1| DNA polymerase alpha catalytic subunit [Mus musculus]
gi|148697793|gb|EDL29740.1| polymerase (DNA directed), alpha 1 [Mus musculus]
Length = 1465
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 244/417 (58%), Positives = 316/417 (75%), Gaps = 22/417 (5%)
Query: 398 YLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLL 457
YL+ ++E I + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLL
Sbjct: 741 YLLYLLEHI---WKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLL 797
Query: 458 HAFHEKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYD 510
HAF+E +Y++PDKQ + +K G+E G+ NK KGRKKA Y+GGLVL+PK GFYD
Sbjct: 798 HAFYENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKATYAGGLVLDPKVGFYD 857
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILP 564
KFI+L+DFNSLYPSIIQE+NICFTT+ + +D + + E LP+ ++ GILP
Sbjct: 858 KFILLLDFNSLYPSIIQEFNICFTTVQRVTSEVQKATEDEEQEQIPE-LPDPNLEMGILP 916
Query: 565 SEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPL 624
EI+KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PL
Sbjct: 917 REIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPL 976
Query: 625 AALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKL 684
AALVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKL
Sbjct: 977 AALVTYKGREILMHTKDMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKL 1036
Query: 685 YKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAG 744
YK LE+DID V+K +LLLKKKKYAAL + S+G I QE+KG+D+VRRDW LA + G
Sbjct: 1037 YKLLEIDIDAVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTG 1096
Query: 745 KFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
FVI QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 NFVIGQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1148
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 135/191 (70%), Gaps = 7/191 (3%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 258
+LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +
Sbjct: 332 NLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWIESVKTHVSCCVMVKNIERTL 391
Query: 259 YLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPGVP 311
Y LPR +T PV++ VY EFD +I+ +YKI+ FKS+ +EK YAF +P VP
Sbjct: 392 YFLPREMKFDLNTGKETAIPVTMKDVYEEFDSKISAKYKIMKFKSKIVEKNYAFEIPDVP 451
Query: 312 DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
+ SEYLEVRYSA+ P LP +L G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 452 EKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLL 511
Query: 372 PSRISWCKYEV 382
ISWCK+EV
Sbjct: 512 NQPISWCKFEV 522
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|62086801|dbj|BAD92007.1| DNA polymerase alpha catalytic subunit [Ambystoma mexicanum]
Length = 1409
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/415 (58%), Positives = 315/415 (75%), Gaps = 23/415 (5%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T L + +I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNE+LLLHAF+
Sbjct: 685 LLYMLEHTWLDTKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFY 744
Query: 462 EKSYVLPDKQYGK----NKKEGEETGEANKGKG---RKKAAYSGGLVLEPKKGFYDKFII 514
E ++++PDK K N + +E E ++GK RKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 745 ENNFIVPDKPTFKKPLQNLVDEDEDIENDQGKQKKVRKKAAYAGGLVLDPKVGFYDKFIL 804
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCE--------YLPEHQVDTGILPSE 566
L+DFNSLYPSIIQE+NICFTT+ R+ DS+ + E LP+ ++ GILP E
Sbjct: 805 LLDFNSLYPSIIQEFNICFTTVQ-RL--DSNAQKMPEGEEQDDIPQLPDPDLELGILPRE 861
Query: 567 IKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAA 626
I+KLVE RRQVK LMKQ +L+ DL MQYDIRQKALKLTANSMYGCLGF SRF+A+PLAA
Sbjct: 862 IRKLVERRRQVKQLMKQSDLNPDLYMQYDIRQKALKLTANSMYGCLGFSFSRFYAKPLAA 921
Query: 627 LVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK 686
LVT KGREILL+T+ +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK
Sbjct: 922 LVTHKGREILLHTRDMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYK 981
Query: 687 QLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746
QLE+DIDGV+K +LLLKKKKYAAL++ +GK + QE+KG+D+VRRDW LA E G +
Sbjct: 982 QLEIDIDGVFKSLLLLKKKKYAALTMEPAGDGKYVTKQELKGLDIVRRDWCDLAKETGNY 1041
Query: 747 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+I+QIL +Q D ++NI + + +I ++ NG +P+ EI K LTK P+
Sbjct: 1042 IITQILSDQPR-----DTIVENIQKQLIEIGENVVNGSIPINQYEINKALTKDPQ 1091
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 138/209 (66%), Gaps = 7/209 (3%)
Query: 180 KHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVK 239
K D+ + + SLPL + +VFR ++LDA+ED Y QPG VYLFGKV+++
Sbjct: 256 KTDQEDSEVVVTDVQVDSSSLPLVIGTDGDQVFRFYWLDAYEDQYNQPGVVYLFGKVWIE 315
Query: 240 ENNSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKIL 292
+H SCC+ V+NI+R +YLLPR + +T PVS+ VY EF++ IA ++K++
Sbjct: 316 SAEAHVSCCLTVKNIERTVYLLPRETQVDLSSGKETGTPVSMMNVYQEFNERIAEKFKLM 375
Query: 293 DFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLL 352
FKS+KIEK YAF +P VP SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L
Sbjct: 376 KFKSKKIEKNYAFEIPDVPANSEYLEVRYSAELPPLPKDLKGETFSHVFGTNTSSLELFL 435
Query: 353 LERKIKGPSWLEFPEAEKFPSRISWCKYE 381
L RKIKGPSWLE + +SWCK E
Sbjct: 436 LSRKIKGPSWLEIKTPQLSFQPVSWCKVE 464
Score = 42.7 bits (99), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 20/23 (86%)
Query: 151 IDDDGGDGYVEDGREIFDDDIED 173
I DD G GYVEDGREIFDDD++D
Sbjct: 1 IVDDDGVGYVEDGREIFDDDLQD 23
>gi|194227748|ref|XP_001494822.2| PREDICTED: DNA polymerase alpha catalytic subunit isoform 2 [Equus
caballus]
Length = 1418
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/413 (57%), Positives = 314/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 694 LLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 753
Query: 462 EKSYVLPDKQYGKNKKE------GEETGEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + ++ + G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 754 ENNYIVPDKQIFRKPQQKLGDEDEDIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 813
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ R+ +D + + E LP+ ++ GILP EI+
Sbjct: 814 LLDFNSLYPSIIQEFNICFTTVQRVASEAQRVTEDGEQEQIPE-LPDPSLEMGILPREIR 872
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 873 KLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 932
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE N+LYK L
Sbjct: 933 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNRLYKLL 992
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G QE+KG+D+VRRDW LA + G FVI
Sbjct: 993 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYFTKQELKGLDIVRRDWCDLAKDTGNFVI 1052
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1053 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1100
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 94/139 (67%), Gaps = 7/139 (5%)
Query: 191 QNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVI 250
Q + LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ ++ SCCV+
Sbjct: 320 QEVQVDSNHLPLVKGADEEQVFQFYWLDAYEDQYNQPGVVFLFGKVWIELAETYVSCCVM 379
Query: 251 VQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKY 303
V+NI+R +Y LP + +T PV + VY EFD+ IAT+YKI+ FKS+ +EK Y
Sbjct: 380 VKNIERTLYFLPCETKIDLNTGKETGTPVRMKDVYDEFDEKIATKYKIMKFKSKIVEKNY 439
Query: 304 AFNLPGVPDLSEYLEVRYS 322
AF +P VP+ SEYLEVRYS
Sbjct: 440 AFEIPDVPEKSEYLEVRYS 458
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|426256798|ref|XP_004022024.1| PREDICTED: DNA polymerase alpha catalytic subunit [Ovis aries]
Length = 1462
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/413 (57%), Positives = 315/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGKNKKE------GEETGEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + ++ + G+ NK KGRKKAAYSGGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQTFRKPQQKLGDEDEDIDGDTNKYKKGRKKAAYSGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++++D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVVEDGEQEQIPE-LPDPSLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE RRQVK LMKQ +L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRRQVKQLMKQQDLNPDLHLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1037 EIDIDGIFKSLLLLKKKKYAALIVEPTSDGNYVTKQEVKGLDIVRRDWCDLAKDTGNFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +Q+ D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQNR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/205 (49%), Positives = 137/205 (66%), Gaps = 9/205 (4%)
Query: 187 NKNIQNPNAKDDS--LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSH 244
+ + P + DS LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H
Sbjct: 314 DSSFSAPEVQVDSSHLPLVKGADEEQVFQFYWLDAYEDPYSQPGVVFLFGKVWIESAETH 373
Query: 245 SSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSR 297
SCCV+V+NI+R + LPR + ++ PV++ VY EFD+ IA +YKI+ FKS+
Sbjct: 374 VSCCVMVKNIERTLCFLPREMKVDLNTGKESGTPVTMKDVYDEFDEKIAAKYKIMKFKSK 433
Query: 298 KIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKI 357
+EK YAF +P VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKI
Sbjct: 434 VVEKNYAFEIPDVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKI 493
Query: 358 KGPSWLEFPEAEKFPSRISWCKYEV 382
KGP WLE + ISWCK E
Sbjct: 494 KGPCWLEVKNPQLLNQPISWCKVEA 518
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKRAKA-GEKCKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|329663230|ref|NP_001192994.1| DNA polymerase alpha catalytic subunit [Bos taurus]
gi|296470534|tpg|DAA12649.1| TPA: polymerase (DNA directed), alpha 1, catalytic subunit [Bos
taurus]
Length = 1462
Score = 457 bits (1177), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/413 (57%), Positives = 315/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGKNKKE------GEETGEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + ++ + G+ NK KGRKKAAYSGGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQTFRKPQQKLGDEDEDIDGDTNKYKKGRKKAAYSGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++++D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVVEDGEQEQIPE-LPDPSLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE RRQVK LMKQ +L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRRQVKQLMKQQDLNPDLHLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1037 EIDIDGIFKSLLLLKKKKYAALIVEPTSDGNYVTKQEVKGLDIVRRDWCDLAKDTGNFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +Q+ D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQNR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 99/190 (52%), Positives = 131/190 (68%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +
Sbjct: 329 LPLVKGADEEQVFQFYWLDAYEDPYSQPGVVFLFGKVWIESAETHVSCCVMVKNIERSLC 388
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + ++ PV++ VY EFD+ IA +YKI+ FKS+ +EK YAF +P VP+
Sbjct: 389 FLPREMKVDLNTGKESGTPVTMKDVYDEFDEKIAAKYKIMKFKSKVVEKNYAFEIPDVPE 448
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 449 KSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLN 508
Query: 373 SRISWCKYEV 382
ISWCK E
Sbjct: 509 QPISWCKVEA 518
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIFDDDIEDVPQKKEKHDKRKKNK 188
EIFDDD+ED + H+K K NK
Sbjct: 93 EIFDDDLED--DALDSHEKGKDNK 114
>gi|350408388|ref|XP_003488387.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Bombus
impatiens]
Length = 1465
Score = 457 bits (1176), Expect = e-125, Method: Compositional matrix adjust.
Identities = 238/423 (56%), Positives = 307/423 (72%), Gaps = 21/423 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I IK T+ + YI+ I+ ELNVLPLA+QIT + GNV+SRTL GR+ERNE+LLLHAFH
Sbjct: 753 IDNLIKITLTEALYILSIVFELNVLPLALQITCIAGNVMSRTLTAGRAERNEYLLLHAFH 812
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
K+Y+ PDK+ K K E T +KKAAY GGLVL+PKKGFYDK I+LMDFNSL
Sbjct: 813 LKNYITPDKRVTKKGKNEENTS-------KKKAAYVGGLVLDPKKGFYDKLILLMDFNSL 865
Query: 522 YPSIIQEYNICFTTIP-VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
YPSIIQEYN+CFTTIP + D++ +PE ++ GI+P+EI KLVESR +VK L
Sbjct: 866 YPSIIQEYNLCFTTIPGAAYAEYEDLS-----IPESNLEFGIIPTEICKLVESRGEVKKL 920
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK PN+S +L MQY+IRQ ALKLTANSMYGCLG + RF+A+ LAALVTAKGREIL +TK
Sbjct: 921 MKTPNISPELKMQYNIRQLALKLTANSMYGCLGATHCRFYAKGLAALVTAKGREILQHTK 980
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
SLVE LNYEVIYGDTDS+MI+ + +Y+ VF +G +IK E NKLYK++ELDIDGV++Y+L
Sbjct: 981 SLVEKLNYEVIYGDTDSIMINTGLLEYEEVFSVGKKIKQEVNKLYKRVELDIDGVFRYLL 1040
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
LL+KKKYAA+ ++KL NG++ +QE KG+D+VRRDW QLA + G+ ++ +L +D
Sbjct: 1041 LLQKKKYAAVIMTKLPNGQIELTQEHKGLDIVRRDWCQLACDVGRKILDHLL-----SDK 1095
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE---GGKVCITQIRLSRNRR 817
S DDR++ I + + ++ VPL+ L ITKQL+K P K Q+ L N+
Sbjct: 1096 SCDDRIEQIFSILHDVAQNVRENQVPLSSLIITKQLSKNPNEYPDTKQVHVQVALRLNKE 1155
Query: 818 GRR 820
G R
Sbjct: 1156 GGR 1158
Score = 190 bits (482), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 99/211 (46%), Positives = 131/211 (62%), Gaps = 10/211 (4%)
Query: 189 NIQNP-NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSC 247
NI+ P + + LPL T+ ++VFR ++ DA+ED YKQPG VYLFGKVFV + SC
Sbjct: 329 NIEMPTDTTEVPLPLVTNANKEEVFRFYWWDAYEDPYKQPGVVYLFGKVFVPSIKEYRSC 388
Query: 248 CVIVQNIDRKIYLLPRSEHLKT--------KEPVSIAQVYSEFDQIATQYKILDFKSRKI 299
C+ V+NI R+IYLLPR ++KT ++ +I VY EF+Q A + I +F+S K+
Sbjct: 389 CLTVKNIPRRIYLLPRV-YVKTSLKGNDDEEQLNTIEDVYKEFNQFANKLGIKEFRSCKV 447
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKG 359
K YAF G P S+YLEVRYSA P +PSD SG + VFGT + LE L+ER IKG
Sbjct: 448 SKNYAFEQEGTPAKSDYLEVRYSANYPPVPSDYSGPSIESVFGTTVNSLELFLIERNIKG 507
Query: 360 PSWLEFPEAEKFPSRISWCKYEVQCNQMEKI 390
P WL+ + SWCK +V C +ME I
Sbjct: 508 PCWLDIKSPLPTGVQTSWCKIKVNCMKMENI 538
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
DKT + +A +KLK LKG KHKYE ENVYEEV EKEY++ V++RQ DDWI DDG
Sbjct: 13 DKTGRLSALEKLKQLKGS--KHKYEVDELENVYEEVDEKEYSKTVIERQNDDWIIDDGES 70
Query: 158 GYVEDGREIFDDDIED 173
GY+EDGREIFDDD++D
Sbjct: 71 GYIEDGREIFDDDLDD 86
>gi|440910592|gb|ELR60375.1| DNA polymerase alpha catalytic subunit, partial [Bos grunniens mutus]
Length = 1455
Score = 456 bits (1174), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/413 (57%), Positives = 314/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 731 LLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 790
Query: 462 EKSYVLPDKQYGKNKKE------GEETGEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + ++ + G+ NK KGRKKAAYSGGLVL+PK GFYDKFI+
Sbjct: 791 ENNYIVPDKQTFRKPQQKLGDEDEDIDGDTNKYKKGRKKAAYSGGLVLDPKVGFYDKFIL 850
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++++D + + E LP+ + GILP EI+
Sbjct: 851 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVVEDGEQEQIPE-LPDPSLGMGILPREIR 909
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE RRQVK LMKQ +L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 910 KLVERRRQVKQLMKQQDLNPDLHLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 969
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 970 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1029
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1030 EIDIDGIFKSLLLLKKKKYAALIVEPTSDGNYVTKQEVKGLDIVRRDWCDLAKDTGNFVI 1089
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +Q+ D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1090 GQILSDQNR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1137
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 99/190 (52%), Positives = 131/190 (68%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +
Sbjct: 322 LPLVKGADEEQVFQFYWLDAYEDPYSQPGVVFLFGKVWIESAETHVSCCVMVKNIERSLC 381
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + ++ PV++ VY EFD+ IA +YKI+ FKS+ +EK YAF +P VP+
Sbjct: 382 FLPREMKVDLNTGKESGTPVTMKDVYDEFDEKIAAKYKIMKFKSKVVEKNYAFEIPDVPE 441
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 442 KSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLN 501
Query: 373 SRISWCKYEV 382
ISWCK E
Sbjct: 502 QPISWCKVEA 511
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/84 (54%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 27 ALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 85
Query: 165 EIFDDDIEDVPQKKEKHDKRKKNK 188
EIFDDD+ED + H+K K NK
Sbjct: 86 EIFDDDLED--DALDSHEKGKDNK 107
>gi|355712599|gb|AES04402.1| polymerase , alpha 1, catalytic subunit [Mustela putorius furo]
Length = 716
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 246/432 (56%), Positives = 322/432 (74%), Gaps = 29/432 (6%)
Query: 387 MEKIRS----KQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSR 442
ME +R+ L+YL+ ++T + +I++IMCELNVLPLA+QITN+ GN++SR
Sbjct: 115 MENVRNMYSESSHLLYLL------EYTWKDARFILQIMCELNVLPLALQITNIAGNIMSR 168
Query: 443 TLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE------GEETGEANK-GKGRKKAA 495
TLMGGRSERNEFLLLHAF+E +Y++PDKQ + ++ + G+ANK KGRKKAA
Sbjct: 169 TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEDIDGDANKYKKGRKKAA 228
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTL 549
Y+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+ ++ +D + +
Sbjct: 229 YAGGLVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASEAQKITEDGEQEQI 288
Query: 550 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMY
Sbjct: 289 PE-LPDPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMY 347
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS 669
GCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N D +
Sbjct: 348 GCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTDLEE 407
Query: 670 VFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGV 729
V+K+GN++KSE NKLYK LE+DIDGV+K +LLLKKKKY AL + S+G QE+KG+
Sbjct: 408 VYKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYGALVVEPTSDGNYSTKQELKGL 467
Query: 730 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
D+VRRDW LA E G FVI QIL +QS D ++NI + + +I ++ NG VP++
Sbjct: 468 DIVRRDWCDLAKETGNFVIGQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQ 522
Query: 790 LEITKQLTKAPE 801
EI K LTK P+
Sbjct: 523 FEINKALTKDPQ 534
>gi|62086807|dbj|BAD92010.1| DNA polymerase alpha catalytic subunit [Caiman crocodilus]
Length = 1419
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 234/400 (58%), Positives = 303/400 (75%), Gaps = 16/400 (4%)
Query: 413 SSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY 472
+ +I++IMCELNVLPLA+QITN+ GN++SRT+MGGRSERNE+LLLHAF+E+ Y++PDKQ
Sbjct: 696 AKFILQIMCELNVLPLALQITNISGNIMSRTMMGGRSERNEYLLLHAFYERDYIVPDKQV 755
Query: 473 GKNKK-----EGEETGEANKGK-GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSII 526
K + E E+ + K K GRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSII
Sbjct: 756 FKKPQQKLVDEDEDFEDQTKSKIGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSII 815
Query: 527 QEYNICFTTI-----PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
QE+NICFTT+ V+ + LP+ ++ GILP EI+KLVE RRQVK LM
Sbjct: 816 QEFNICFTTVQRVSSDVQKRTEEGEEEEIPELPDSSLEMGILPKEIRKLVERRRQVKQLM 875
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
KQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK
Sbjct: 876 KQPHLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREILMHTKE 935
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
+V+ +N EVIYGDTDS+MI+ N + + V K+GN+IKSE N+LYK LE+DIDG++K +LL
Sbjct: 936 MVQKMNLEVIYGDTDSIMINTNSTNLEEVLKLGNKIKSEVNRLYKLLEIDIDGIFKSLLL 995
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
LKKKKYAAL++ +G + QE+KG+D+VRRDW LA E+G +VI QIL +Q+
Sbjct: 996 LKKKKYAALTVEPTGDGNYVTKQELKGLDIVRRDWCDLAKESGNYVIGQILSDQTR---- 1051
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + I ++ NG VP++ EI K LTK P+
Sbjct: 1052 -DIIVENIQRRLIDIGENVTNGTVPISQFEINKALTKDPQ 1090
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/283 (40%), Positives = 163/283 (57%), Gaps = 44/283 (15%)
Query: 192 NPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIV 251
+PN PL + +VFR ++LDA+ED Y QPG V+LFGKV+++ ++ SCCV V
Sbjct: 272 DPNV----FPLVNGEDGDQVFRFYWLDAYEDQYNQPGVVFLFGKVWIESAKAYVSCCVTV 327
Query: 252 QNIDRKIYLLPR------SEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYA 304
+NI+R +YLLPR S +T+ PV+I VY EF DQI+ +YKI+ FKS+K+EK YA
Sbjct: 328 KNIERTVYLLPRKMEVNLSSGQETENPVTIMSVYKEFNDQISVKYKIMKFKSKKVEKHYA 387
Query: 305 FNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE 364
F +P VP S+YLEVRYSA+ LP DL G+TFSHVFGT +S LE LL+ RKIKGP WLE
Sbjct: 388 FEIPDVPAKSDYLEVRYSAEFSRLPQDLKGETFSHVFGTNSSSLELLLMSRKIKGPCWLE 447
Query: 365 FPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELN 424
+ +SWCK ME + K L+ +I +L
Sbjct: 448 IKNPQPSSQSVSWCK-------MEAVALKPDLVNVIK--------------------DLP 480
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
PL + ++ RT+ ++ +NE + + A +++ L
Sbjct: 481 PPPLVVISLSI------RTIPNPKTHQNEVMAIAALVHQNFCL 517
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Query: 151 IDDDGGDGYVEDGREIFDDDIED---VPQKKEKHDKRKKNKNIQ 191
I DD G GYVEDGREIFD+D+ED +P KK K DK KN++
Sbjct: 1 IIDDDGIGYVEDGREIFDEDLEDDALLPIKKGKGDKTNDKKNVK 44
>gi|344288735|ref|XP_003416102.1| PREDICTED: DNA polymerase alpha catalytic subunit [Loxodonta
africana]
Length = 1461
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 240/413 (58%), Positives = 315/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ +K KGRKKAAYSGGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTSKYKKGRKKAAYSGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKITEDGEQEQIPE-LPDPSLEIGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G QE+KG+D VRRDW LA + G FVI
Sbjct: 1037 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYFIKQELKGLDTVRRDWCDLAKDTGNFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +Q+ D ++NI + + +I ++ +G +P++ EI K LTK P+
Sbjct: 1097 GQILSDQNR-----DTIVENIQKRLIEIGENVLSGRIPVSQFEINKALTKDPQ 1144
Score = 209 bits (532), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 97/189 (51%), Positives = 132/189 (69%), Gaps = 7/189 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LP+ + ++ F+ ++LDA+ED Y QPG V+LFGKV+++ ++ SCCV+V+NI+R +Y
Sbjct: 329 LPMVKGADEEQAFQFYWLDAYEDPYNQPGVVFLFGKVWIESAKTYVSCCVMVKNIERTLY 388
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + +T PV++ VY EFD+ IAT+YK++ FKS+ +EK YAF +P VP+
Sbjct: 389 FLPRELKIDLNTGKETGTPVTMKDVYDEFDEKIATKYKLMKFKSKIVEKNYAFEIPDVPE 448
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 449 KSEYLEVRYSAESPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLN 508
Query: 373 SRISWCKYE 381
+SWCK E
Sbjct: 509 QPVSWCKVE 517
Score = 49.3 bits (116), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E +Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKRAKA-GEKYKYEIEDFASVYEEVDEDQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|195055235|ref|XP_001994525.1| GH17298 [Drosophila grimshawi]
gi|193892288|gb|EDV91154.1| GH17298 [Drosophila grimshawi]
Length = 1481
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 233/441 (52%), Positives = 307/441 (69%), Gaps = 27/441 (6%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 747 NITKLISLTMQDASYMLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 806
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSG-------------GLVLEPKKG 507
HEK+Y+ PDKQ + + + N G + GLVLEP +G
Sbjct: 807 HEKNYIAPDKQPQRRGAAVKAEADPNATTGNDTTVATTGAGAARKKAAYAGGLVLEPLRG 866
Query: 508 FYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEI 567
Y+K+++LMDFNSLYPSIIQEYNICFTT V+ D+D + LP+ + GILP ++
Sbjct: 867 LYEKYVLLMDFNSLYPSIIQEYNICFTT--VQQPHDADQLPV---LPDSSAEPGILPQQL 921
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
++LVESRR+VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAAL
Sbjct: 922 RRLVESRREVKKLMAVPDLSPELHMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAAL 981
Query: 628 VTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ 687
VT KGREIL+NT+ LV+ LNY+V+YGDTDSLMI+ N+ DYD V++IG+ IK NKLYKQ
Sbjct: 982 VTHKGREILVNTQQLVQKLNYDVVYGDTDSLMINTNITDYDQVYRIGHAIKQSVNKLYKQ 1041
Query: 688 LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFV 747
LELDIDGV+ +LLLKKKKYAA+ +SK + G + E KG+D+VRRDWSQ+A GK V
Sbjct: 1042 LELDIDGVFACLLLLKKKKYAAVKLSKNAKGVLRREHEYKGLDIVRRDWSQVAIMVGKAV 1101
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GG 803
+ ++L E+ L+D+L +H + +I+ ++ VPL L ITKQLT+AP+
Sbjct: 1102 LDEVLAEK-----PLEDKLDAVHAQLGRIKDQIEQSAVPLPLYVITKQLTRAPQEYANSA 1156
Query: 804 KVCITQIRLSRNRRGRRRRRR 824
+ Q+ + NR RR ++
Sbjct: 1157 SLPHVQVAMRMNREHNRRYKK 1177
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/182 (44%), Positives = 108/182 (59%), Gaps = 17/182 (9%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R ++ +A+ED K PG V+LFG+ S CV VQNI+R +YLLPR L
Sbjct: 351 LRFWYWEAWEDPIKLPGEVFLFGR-----TPDGKSICVRVQNINRVLYLLPRQYLLDPIT 405
Query: 268 --KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYS 322
TK+ V+ A +Y EFD IAT+ K+ F+SRK+ K +A + G VP +YLEV Y
Sbjct: 406 KEHTKQKVTAADMYKEFDTHIATELKLETFRSRKVSKSFANHAIGIDVPQTCDYLEVHYD 465
Query: 323 AKCPALPSDLSG--DTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
K PA P+ L+ D+ +H+FG T+ LE LLERKIKGP WL+ P+ ISWCK
Sbjct: 466 GKKPA-PNMLNKKYDSIAHIFGASTNALERFLLERKIKGPCWLQISGFNVNPAAISWCKT 524
Query: 381 EV 382
+V
Sbjct: 525 DV 526
Score = 64.7 bits (156), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDK+ +FAA ++LK LKG K + E D+ VYE V E+EY +R ++ DWI++DG
Sbjct: 15 IDKSGRFAALERLKGLKGTKNKCEVEDKVDD-VYEVVDEREYAKRANEKYGGDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIE 172
GY EDGR+ F+D+ E
Sbjct: 74 -GYAEDGRDFFEDEDE 88
>gi|443732880|gb|ELU17443.1| hypothetical protein CAPTEDRAFT_228337 [Capitella teleta]
Length = 1425
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 242/438 (55%), Positives = 319/438 (72%), Gaps = 23/438 (5%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T++ +++I +++CELN+LPLA+QITN+CGN+++RTLMGGR+ERNEFLL HAF
Sbjct: 729 LLSMVEMTLVDATFIQRLLCELNILPLALQITNICGNIMARTLMGGRAERNEFLLNHAFT 788
Query: 462 EKSYVLPDKQYGKNKKEG-----EETGEANKGKG------RKKAAYSGGLVLEPKKGFYD 510
EK +++PDK YGK + E + G R+K AY+GGLVLEPKKGFYD
Sbjct: 789 EKGFIVPDKVYGKKTNAAVQPVVDPDDEIDHDSGKKTQSQRRKPAYAGGLVLEPKKGFYD 848
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKL 570
+I+L+DFNSLYPSIIQEYNICFTTI D P+ ++ GILP+EI+KL
Sbjct: 849 TYILLLDFNSLYPSIIQEYNICFTTIGRDTAAKDDEEDAVMECPDPSLEPGILPTEIRKL 908
Query: 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
V+SRRQVK +MK P+LS DL MQYDIRQKALKLTANSMYGCLGF +SRF+A+PLAALVTA
Sbjct: 909 VQSRRQVKTMMKNPDLSPDLYMQYDIRQKALKLTANSMYGCLGFTHSRFYAKPLAALVTA 968
Query: 631 KGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
KGREIL+ TK LV+N+N +VIYGDTDS+M++ N + + VFK+GN++K+E NKLY+ LE+
Sbjct: 969 KGREILMKTKDLVQNMNLDVIYGDTDSIMVNSNSTNMEEVFKLGNKVKTEVNKLYRLLEI 1028
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNG-KMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
DIDGVYK MLLLKKKKYAAL++ K NG K +E+KG+D+VRRDW +LA EAGKFV+
Sbjct: 1029 DIDGVYKCMLLLKKKKYAALNMVK--NGDKYDAVREMKGLDIVRRDWCELAKEAGKFVVD 1086
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG----GKV 805
QIL + S ++ ++NIH + ++ + G VP+ L ITK LTK PE +
Sbjct: 1087 QIL-----SGSSRENVVENIHAKLMEVGELVKGGDVPIDLYYITKSLTKNPEDYPDKKSL 1141
Query: 806 CITQIRLSRNRRGRRRRR 823
Q+ L N +G R+ R
Sbjct: 1142 PHVQVALRLNSKGGRKLR 1159
Score = 191 bits (485), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 173/328 (52%), Gaps = 61/328 (18%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYE-----FTADENVYEEVSEKEYTERVLKRQEDDWIDD 153
KT+K A K+ ++ + + K + F + E E +E E V R D D+
Sbjct: 208 KTSKPAPVMKMPSMEAK-IPAKSDSQESGFESAEMDIGEFDSQEIQEEV--RPTQDIKDE 264
Query: 154 DGGDGYVED----GREIFDDDIEDVPQKKEKHDKRKKNKNI--------------QNPNA 195
D GD E G + DD + P ++K KKN ++ N A
Sbjct: 265 DLGDLSQESMDVSGIDFEDDFLPAAPTVQDKKAGEKKNSSVLTELPDFHSNATWEVNKGA 324
Query: 196 KD-------DS--LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSS 246
D DS LPL T+ + ++V RMF+LDA+ED YKQPG VYLFGKV++ +H
Sbjct: 325 SDIPVDVVVDSSKLPLITNDDGEQVLRMFWLDAYEDQYKQPGVVYLFGKVWIDSAKTH-- 382
Query: 247 CCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAF 305
HLKTKEPV+ +Y EF D +A +YKI+ +KS K+EK+YAF
Sbjct: 383 -------------------HLKTKEPVTFIDLYQEFSDAVADKYKIMKYKSLKVEKEYAF 423
Query: 306 NLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE- 364
++ +P SEYLEVRY A+ ALP+DL GDTFSH+FGT TS LE L+ER +KGP WL+
Sbjct: 424 DIADIPAQSEYLEVRYPAEHSALPNDLKGDTFSHIFGTTTSSLELFLIERGLKGPRWLDI 483
Query: 365 -FPEAEKFPSRISWCKYEVQCNQMEKIR 391
P+ P ISWCK E Q + IR
Sbjct: 484 KLPQLSHPP--ISWCKVEALVTQPDYIR 509
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 65/98 (66%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DKT + AA ++LK K G K+KY+ +++VYEEV E+EY++ V +RQEDDWI DD G
Sbjct: 30 VDKTGRSAALERLKKSKQSGEKNKYDLINEDDVYEEVDEEEYSKIVRERQEDDWIVDDDG 89
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPN 194
GYVEDGREIFD++ + K KK +NPN
Sbjct: 90 SGYVEDGREIFDEEANEASASSTAKGKSKKASKSKNPN 127
>gi|410988300|ref|XP_004000424.1| PREDICTED: DNA polymerase alpha catalytic subunit [Felis catus]
Length = 1462
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 314/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGR+ERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRAERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGKNKKE------GEETGEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + ++ + G+ANK KGRKKAAY+GGLVL+PK G YDKFI+
Sbjct: 798 ENNYIVPDKQIFRKPQQKLGDEDEDLDGDANKYKKGRKKAAYAGGLVLDPKAGLYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ + +D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVASEAHKATEDGEQEQIPE-LPDPNLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + V+K+GN++KSE NKLY+ L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVYKLGNKVKSEVNKLYRLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G I QE+KG+D+VRRDW LA E G FV+
Sbjct: 1037 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKETGNFVL 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 133/190 (70%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +Y
Sbjct: 329 LPLVKGADEEQVFQFYWLDAYEDQYTQPGVVFLFGKVWIESAKTHVSCCVMVKNIERTLY 388
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + +T+ V++ VY EFD+ IA +YKI+ FKS+++EK YAF +P VP+
Sbjct: 389 FLPRETKIDLNTGKETETLVTMKDVYDEFDEKIAAKYKIMKFKSKQVEKNYAFEIPDVPE 448
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRY+A+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 449 KSEYLEVRYAAEMPQLPQDLKGETFSHVFGTNTSSLEIFLMNRKIKGPCWLEVKNPQLLN 508
Query: 373 SRISWCKYEV 382
+SWCK E
Sbjct: 509 PPVSWCKVEA 518
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|340719938|ref|XP_003398401.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Bombus
terrestris]
Length = 1462
Score = 454 bits (1168), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/423 (55%), Positives = 306/423 (72%), Gaps = 21/423 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I IK T+ + YI+ I+ ELNVLPLA+QIT + GNV+SRTL GR+ERNE+LLLHAFH
Sbjct: 756 IDNLIKITLTEALYILSIVFELNVLPLALQITCIAGNVMSRTLTAGRAERNEYLLLHAFH 815
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
K+Y+ PDK+ K K E +KKAAY GGLVL+PKKGFYDK I+LMDFNSL
Sbjct: 816 LKNYITPDKRVTKKGKNEE-------NASKKKAAYVGGLVLDPKKGFYDKLILLMDFNSL 868
Query: 522 YPSIIQEYNICFTTIP-VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
YPSIIQEYN+CFTT+P + D++ +PE ++ G++P+EI KLVESR +VK L
Sbjct: 869 YPSIIQEYNLCFTTVPGAAYAEYEDLS-----IPESNLEFGVIPTEICKLVESRGEVKKL 923
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK PN+S +L MQY+IRQ ALKLTANSMYGCLG + RF+A+ LAALVTAKGREIL +TK
Sbjct: 924 MKTPNISPELKMQYNIRQLALKLTANSMYGCLGATHCRFYAKGLAALVTAKGREILQHTK 983
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
SLVE LNYEVIYGDTDS+MI+ + +Y+ VF +G +IK E NKLYK++ELDIDGV++Y+L
Sbjct: 984 SLVEKLNYEVIYGDTDSIMINTGLLEYEEVFSVGKKIKQEVNKLYKRVELDIDGVFRYLL 1043
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
LL+KKKYAA+ ++KL NG++ +QE KG+D+VRRDW QLA + G+ ++ +L +D
Sbjct: 1044 LLQKKKYAAVIMTKLPNGQIELTQEHKGLDIVRRDWCQLACDIGRKILDHLL-----SDK 1098
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE---GGKVCITQIRLSRNRR 817
S DDR++ I + + ++ VPL+ L ITKQL+K P K Q+ L N+
Sbjct: 1099 SCDDRIEQIFSILHDVAQNVRENQVPLSSLIITKQLSKNPNEYPDTKQAHVQVALRLNKE 1158
Query: 818 GRR 820
G R
Sbjct: 1159 GGR 1161
Score = 194 bits (492), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 133/211 (63%), Gaps = 10/211 (4%)
Query: 189 NIQNP-NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSC 247
NI+ P + ++SLPL T+ ++VFR ++ DA+ED YKQPG VYLFGKVFV + SC
Sbjct: 332 NIEMPTDTTEESLPLVTNANKEEVFRFYWWDAYEDPYKQPGVVYLFGKVFVPSIKEYRSC 391
Query: 248 CVIVQNIDRKIYLLPRSEHLKT--------KEPVSIAQVYSEFDQIATQYKILDFKSRKI 299
C+ V+NI R+IYLLPR ++KT ++ +I VY EF+Q A + I +F+S K+
Sbjct: 392 CLTVKNIPRRIYLLPRV-YVKTSLKGNNDEEQLNTIENVYKEFNQFANKLGIKEFRSCKV 450
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKG 359
K YAF G P S+YLEVRYSA P +PSD SG + VFGT + LE L+ER IKG
Sbjct: 451 SKNYAFEQEGTPAKSDYLEVRYSANYPPVPSDYSGPSIESVFGTTVNSLELFLIERNIKG 510
Query: 360 PSWLEFPEAEKFPSRISWCKYEVQCNQMEKI 390
P WL+ + SWCK +V C +ME I
Sbjct: 511 PCWLDIKSPLPTGVQTSWCKIKVNCMKMENI 541
Score = 102 bits (253), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
DKT + +A +KLK LKG KHKYE ENVYEEV EKEY++ V++RQ DDWI DDG
Sbjct: 15 DKTGRLSALEKLKQLKGS--KHKYEVDELENVYEEVDEKEYSKTVIERQNDDWIIDDGES 72
Query: 158 GYVEDGREIFDDDIED 173
GY+EDGREIFDDD++D
Sbjct: 73 GYIEDGREIFDDDLDD 88
>gi|432093281|gb|ELK25464.1| DNA polymerase alpha catalytic subunit [Myotis davidii]
Length = 1533
Score = 454 bits (1167), Expect = e-124, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 314/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++I+CELNVLPLA+QITN+ GN++SRTLMGGR+ERNEFLLLHAF+
Sbjct: 739 LLYLLEHTWKDARFILQILCELNVLPLALQITNIAGNIMSRTLMGGRAERNEFLLLHAFY 798
Query: 462 EKSYVLPDKQYGKNKKE------GEETGEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + ++ + G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 799 ENNYIVPDKQIFRKPQQKLGDEDEDIDGDVNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 858
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 859 LLDFNSLYPSIIQEFNICFTTVQRVASETQKVTEDEEQEQIPE-LPDPSLEMGILPREIR 917
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 918 KLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFCYSRFYAKPLAALV 977
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 978 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1037
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG++K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1038 EIDIDGIFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1097
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I D+ NG VP + EI K LTK P+
Sbjct: 1098 GQILSDQSR-----DTIVENIQKRLIEIGEDVLNGSVPASQFEINKALTKDPQ 1145
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/190 (53%), Positives = 134/190 (70%), Gaps = 7/190 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV++K ++ SCCV+V+NI+R +Y
Sbjct: 330 LPLVKGADEEQVFQFYWLDAYEDQYNQPGVVFLFGKVWIKSAETYVSCCVMVKNIERTLY 389
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LPR + +T PV++ VYSEFD+ IAT+YKI+ FKS+ +EK YAF +P VP+
Sbjct: 390 FLPREMKIDLNTGKETGTPVTMKDVYSEFDEKIATKYKIMKFKSKIVEKNYAFEIPDVPE 449
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYS++ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 450 KSEYLEVRYSSEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLN 509
Query: 373 SRISWCKYEV 382
ISWCK E
Sbjct: 510 QPISWCKVEA 519
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGVGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|347966812|ref|XP_321134.5| AGAP001929-PA [Anopheles gambiae str. PEST]
gi|333469889|gb|EAA00974.5| AGAP001929-PA [Anopheles gambiae str. PEST]
Length = 1589
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 243/444 (54%), Positives = 322/444 (72%), Gaps = 26/444 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+V+ + TM + Y +++MCELN LPLA+QIT + GN+++RTL GGR+ERNEFLLLHAF
Sbjct: 794 SLVQLVGLTMQDNFYTLRLMCELNALPLALQITQIAGNLMNRTLHGGRAERNEFLLLHAF 853
Query: 461 HEKSYVLPDK--------QYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKF 512
HEK Y+LPDK K GEE A K K + KAAY+GGLVL+P KGFYDKF
Sbjct: 854 HEKDYILPDKVGFQGPGGGQKNGKGGGEEAAAAEKRKPKNKAAYAGGLVLDPIKGFYDKF 913
Query: 513 IILMDFNSLYPSIIQEYNICFTTIPVRML--------QDSDITTLCEYLPEHQVDTGILP 564
++LMDFNSLYPSIIQEYNICFTT+ + D D T L E + GILP
Sbjct: 914 VLLMDFNSLYPSIIQEYNICFTTVLPPAVGEGQEGPDPDGD-TALLEPTILATNEIGILP 972
Query: 565 SEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPL 624
+I+KLVESRR VK LMK +LS +L+MQY+IRQ ALKLTANS+YGCLG+ SRF+AQ L
Sbjct: 973 RQIRKLVESRRAVKQLMKASDLSPELVMQYNIRQMALKLTANSLYGCLGYTRSRFYAQHL 1032
Query: 625 AALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKL 684
A+L+T KGREIL+NTKS+VE +NY+VIYGDTDS+M+S N+ DY+ V++IG IK NK
Sbjct: 1033 ASLITLKGREILMNTKSIVERMNYQVIYGDTDSIMVSTNITDYEQVYRIGASIKQHVNKA 1092
Query: 685 YKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAG 744
Y+ LELD+DG+YKY+LLLKKKKYAA+SISK ++G +C+QE+KG+D+VRRDWS++A AG
Sbjct: 1093 YRCLELDVDGIYKYLLLLKKKKYAAVSISKKADGAFVCTQELKGLDIVRRDWSRIAVLAG 1152
Query: 745 KFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA----P 800
+++QIL +D +D+R++NIH ++K++ DL G + L LLEITKQLT++
Sbjct: 1153 NMILAQIL-----SDAPMDERIENIHLRLEKLKDDLVAGTLSLQLLEITKQLTRSLNEYG 1207
Query: 801 EGGKVCITQIRLSRNRRGRRRRRR 824
+ G++ Q+ N++ R +R
Sbjct: 1208 DAGQLPHVQVAQRMNKQRNRNYKR 1231
Score = 143 bits (361), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 73/180 (40%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
Query: 208 NKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL 267
+ + + +F DA+ D K G +YLFG++ S CV VQN+DR +YLL R H
Sbjct: 399 STETMKFWFWDAWNDPNKCQGELYLFGRISAGNGRDFQSICVHVQNVDRCMYLLARETHT 458
Query: 268 KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPG----VPDLSEYLEVRYS 322
+T PVS+ VY+EF + I+T+ I ++++ + K +A+ VP +EYLEVRYS
Sbjct: 459 ETGAPVSMLDVYNEFCNDISTKLNITKYRTKVVTKSFAYTSATSSLQVPVTAEYLEVRYS 518
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEV 382
AK A P D T +H+FG T+ +E LLERK+KGP W+E ++ SWCK EV
Sbjct: 519 AKLAAPPPDKRYRTIAHIFGANTNVVEQFLLERKVKGPCWMELRNTTPRETKSSWCKREV 578
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 55/74 (74%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDK +FAA ++LK +K G K+KYE ENVY+EV EKEY + V +R DDW++DD G
Sbjct: 16 IDKHGRFAALERLKKVKEVGTKNKYEVDEIENVYDEVDEKEYAKIVNERMHDDWVEDDDG 75
Query: 157 DGYVEDGREIFDDD 170
GYVE+GREIFD+D
Sbjct: 76 LGYVENGREIFDED 89
>gi|328782070|ref|XP_001121438.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Apis
mellifera]
Length = 1370
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 232/422 (54%), Positives = 307/422 (72%), Gaps = 20/422 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I IK T+ + YI+ I+ +LN+LPLA+QIT++ GNV+SRTL GR+ERNE+LLLHAFH
Sbjct: 661 IDNLIKITLTEALYILSIVFDLNILPLALQITSIAGNVISRTLTAGRAERNEYLLLHAFH 720
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
K+Y+ PDK+ K G+ N+G RKKAAY+GGLVLEPKKGFYDK I+LMDFNSL
Sbjct: 721 LKNYITPDKRIMKK-------GKDNEGVTRKKAAYTGGLVLEPKKGFYDKLILLMDFNSL 773
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
YPSIIQEYN+CFTT+P D ++ PE +++G++P+EI+KLVESR +VK LM
Sbjct: 774 YPSIIQEYNLCFTTVPGAAYADYGNLSI----PESNLESGVIPTEIRKLVESRGEVKKLM 829
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K +S +L MQY+IRQ ALKLTANSMYGCLG + RF+A+ LAA+VTAKGREIL +TKS
Sbjct: 830 KT-TISPELKMQYNIRQLALKLTANSMYGCLGATHCRFYAKGLAAMVTAKGREILQHTKS 888
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
LVE LNYEVIYGDTDS+MI+ N+ DY+ VF +G +IK E NKLYK++ELDIDGV++Y+LL
Sbjct: 889 LVEKLNYEVIYGDTDSIMINTNLLDYEEVFSVGKKIKQEVNKLYKRVELDIDGVFRYLLL 948
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
L+KKKYAA+ ++KL NG++ +QE KG+D+VRRDW QLA + GK ++ +L Q
Sbjct: 949 LQKKKYAAVIMTKLPNGQIELTQEHKGLDIVRRDWCQLACDTGKKILDHLLSNQ-----P 1003
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE---GGKVCITQIRLSRNRRG 818
+DR++ I + + ++ + L+ L ITKQL+K P K Q+ L N+ G
Sbjct: 1004 CEDRIEQIFMILHDVAQNVRENQISLSSLVITKQLSKNPNEYPDTKQAHVQVALRLNKEG 1063
Query: 819 RR 820
R
Sbjct: 1064 GR 1065
Score = 189 bits (479), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 128/201 (63%), Gaps = 13/201 (6%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL T+ ++VFR ++ DA+ED YKQPG VYL GKVFV + SCC+ V+NI R+IY
Sbjct: 249 LPLLTNVNKEEVFRFYWWDAYEDPYKQPGVVYLLGKVFVPSIKEYCSCCLTVKNIPRRIY 308
Query: 260 LLPRSEHLKT--------KEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP 311
LLPR ++KT ++ ++ VY EF+Q A + I +F+S K+ K YAF G P
Sbjct: 309 LLPRV-YIKTSFKDNNEEEQLNTMEDVYKEFNQFANKLGIKEFRSSKVSKHYAFEQEGTP 367
Query: 312 DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
+S+YLEVRY+A P +PSD SG + VFGT + LE LL+ER IKGP WLE
Sbjct: 368 AISDYLEVRYAAHYPPMPSDYSGPSIERVFGTTVNALELLLIERNIKGPCWLEI--KCPL 425
Query: 372 PSRI--SWCKYEVQCNQMEKI 390
PS I SWCK +V C +ME I
Sbjct: 426 PSNIQTSWCKIKVNCMKMENI 446
Score = 102 bits (255), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 60/77 (77%), Gaps = 2/77 (2%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDKT + +A +KLK LKG K+KYE ENVYEEV EKEYT+ V++RQ DDWI DDG
Sbjct: 14 IDKTGRLSALEKLKQLKGS--KNKYEIDKLENVYEEVDEKEYTKTVIERQSDDWIIDDGE 71
Query: 157 DGYVEDGREIFDDDIED 173
GY+EDGREIFDDD++D
Sbjct: 72 SGYIEDGREIFDDDLDD 88
>gi|432930030|ref|XP_004081285.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Oryzias
latipes]
Length = 1460
Score = 447 bits (1149), Expect = e-122, Method: Compositional matrix adjust.
Identities = 246/434 (56%), Positives = 319/434 (73%), Gaps = 20/434 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + I++IMCELNVLPLA+QITN+ GNVLSRTLMGGRSERNE+LLLHAFH
Sbjct: 741 LLYLLELTWTDAKLILQIMCELNVLPLALQITNIAGNVLSRTLMGGRSERNEYLLLHAFH 800
Query: 462 EKSYVLPDKQYGKNKK----EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
+K+Y++PDK K + +GEE +A KGK +KKAAYSGGLVL+PK GFYD+F++L+D
Sbjct: 801 DKNYIVPDKPSFKKAQLEMGDGEEDVDAGKGKRKKKAAYSGGLVLDPKVGFYDQFVLLLD 860
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDS------DITTLCEYLPEHQVDTGILPSEIKKLV 571
FNSLYPSIIQE+NICFTT+ R Q+S D + +P+ ++ GILP EI+KLV
Sbjct: 861 FNSLYPSIIQEFNICFTTV-QREAQNSRRKREEDESEEIPEIPDPGLEMGILPKEIRKLV 919
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
E R+QVK LMKQ +++ DL MQYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT K
Sbjct: 920 ERRKQVKQLMKQQDINPDLYMQYDIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTHK 979
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREIL++TK +V+ +N EVIYGDTDS+MI+ N + VFK+GN++K+E NKLYK LE+D
Sbjct: 980 GREILMHTKDMVQKMNLEVIYGDTDSIMINTNSKSLEEVFKLGNKVKAEVNKLYKLLEID 1039
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
IDGV+K +LLLKKKKYAAL + +G+ QE+KG+D+VRRDW LA E G +VI QI
Sbjct: 1040 IDGVFKSLLLLKKKKYAALVVEHHGDGRYSVKQELKGLDIVRRDWCDLAKECGNYVIGQI 1099
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG----GKVCI 807
L +QS D ++NI +H+ ++ + NG +PL L EI K LTK P+ +
Sbjct: 1100 LSDQSR-----DIIVENIQKHLVEVGERVANGDIPLNLYEIHKALTKDPQDYPDKKSLPH 1154
Query: 808 TQIRLSRNRRGRRR 821
+ L N +G RR
Sbjct: 1155 VHVALWINSQGGRR 1168
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/189 (52%), Positives = 129/189 (68%), Gaps = 6/189 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + + FR ++LDAFED Y QPG VYLFGKV+++ SH SCCV V+NI+R IY
Sbjct: 333 LPLVEGEDGEPAFRFYWLDAFEDPYNQPGVVYLFGKVWIQSAKSHVSCCVTVKNIERTIY 392
Query: 260 LLPRSEHLKTK------EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDL 313
LLPR K EPV + VY EF +++ ++K++ FKS+K+EK YAF +P VP+
Sbjct: 393 LLPREYKTNPKTGEVSGEPVGMMDVYQEFSELSEKFKVMKFKSKKVEKNYAFEIPDVPNQ 452
Query: 314 SEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS 373
EYL+++YSA+ PALP DL G TFSH+FGT TS LE+ LL RKIKGP WL+ +
Sbjct: 453 CEYLQIQYSAEFPALPPDLKGATFSHIFGTNTSSLEHFLLSRKIKGPCWLDIKTPQMMHQ 512
Query: 374 RISWCKYEV 382
+SWCK EV
Sbjct: 513 PVSWCKVEV 521
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
+K + +A ++LK K G K KY+ +VYEEV E++Y++ V +RQEDDWI DD G
Sbjct: 36 EKVGRKSALEQLKKAK-MGEKIKYKVEEFSHVYEEVDEEQYSKLVQERQEDDWIIDDDGT 94
Query: 158 GYVEDGREIF 167
GYVEDGREIF
Sbjct: 95 GYVEDGREIF 104
>gi|444706975|gb|ELW48287.1| DNA polymerase alpha catalytic subunit [Tupaia chinensis]
Length = 1414
Score = 443 bits (1140), Expect = e-121, Method: Compositional matrix adjust.
Identities = 238/413 (57%), Positives = 306/413 (74%), Gaps = 30/413 (7%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 702 LLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 761
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 762 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 821
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 822 LLDFNSLYPSIIQEFNICFTTVQRVSSEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 880
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 881 KLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 940
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREI N EVIYGDTDS+MI+ N D + VFK+GN++K+E NKLYK L
Sbjct: 941 TYKGREI-----------NLEVIYGDTDSIMINTNSTDLEEVFKLGNKVKNEVNKLYKLL 989
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G QE+KG+D+VRRDW LA + G FVI
Sbjct: 990 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYFTKQELKGLDIVRRDWCDLAKDTGNFVI 1049
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + I ++ NG VP++ EI K LTK P+
Sbjct: 1050 GQILSDQSR-----DTIVENIQKRLIHIGENVLNGSVPVSQFEINKALTKDPQ 1097
Score = 209 bits (533), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 104/208 (50%), Positives = 137/208 (65%), Gaps = 9/208 (4%)
Query: 184 RKKNKNIQNPNAKDDS--LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKEN 241
++ + N K DS LPL + +VF+ ++LDA+ED Y QPG ++FGKV ++
Sbjct: 314 QEDDSNFSTQEVKVDSSHLPLVKGTDGDQVFQFYWLDAYEDQYNQPGIAFVFGKVRIESA 373
Query: 242 NSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDF 294
+H SCCV+V+NI+R +Y LPR + +T PV++ VY EFD+ IAT+YKI+ F
Sbjct: 374 KTHVSCCVMVKNIERTLYFLPREMKIDLNTGKETGTPVTMKDVYDEFDEKIATKYKIMKF 433
Query: 295 KSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLE 354
KS+ +EK YAF +P VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+
Sbjct: 434 KSKIVEKNYAFEIPDVPEKSEYLEVRYSAEGPQLPQDLKGETFSHVFGTNTSSLELFLMN 493
Query: 355 RKIKGPSWLEFPEAEKFPSRISWCKYEV 382
RKIKGP WLE + ISWCK E
Sbjct: 494 RKIKGPCWLEVKNPQLLNPPISWCKVEA 521
Score = 46.6 bits (109), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GY EDGR
Sbjct: 37 ALERLKKAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYQEDGR 95
Query: 165 EIF 167
EIF
Sbjct: 96 EIF 98
>gi|322790930|gb|EFZ15596.1| hypothetical protein SINV_80520 [Solenopsis invicta]
Length = 1459
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/401 (54%), Positives = 294/401 (73%), Gaps = 16/401 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ + T+ + YI+ I+ +LNV+PLA+QIT + GN+LSRTL+GGR+ERNE+LLLHAF+
Sbjct: 743 LLNLMHMTLKEAKYIVTIVMDLNVIPLALQITCLAGNILSRTLLGGRAERNEYLLLHAFN 802
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
K Y+ PDK+ E+ G A+ G RK AAY+GGLVL+PKKGFYDK ++LMDFNSL
Sbjct: 803 LKDYITPDKKV-------EKKGRADDGPRRKAAAYTGGLVLDPKKGFYDKLVLLMDFNSL 855
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
YPSIIQEYN+CFTTIP D + ++ PE ++ G++P+EI KLV+SR+Q+K LM
Sbjct: 856 YPSIIQEYNLCFTTIPGAAYADVEQLSI----PESNLELGVIPTEIHKLVKSRQQIKQLM 911
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K PNL+ + M Y IRQ ALKLTANSMYGCLG + RF+A+ LAALVTAKGREIL +TK
Sbjct: 912 KTPNLTPEQKMDYHIRQMALKLTANSMYGCLGATHCRFYAKGLAALVTAKGREILEDTKH 971
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
LVE L YEVIYGDTDSLMI+ N+ +YD VF IG +I E N YK++ELDIDGV++Y+LL
Sbjct: 972 LVEKLQYEVIYGDTDSLMINTNILEYDDVFSIGRKIMREVNNRYKKVELDIDGVFRYLLL 1031
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
L+KKKYAA+++SKL NG++ QE KG+D+VRRDW LA + GK ++ +L +QS
Sbjct: 1032 LQKKKYAAVTMSKLPNGQIQLVQEHKGLDIVRRDWCPLACDTGKKILDILLCDQSS---- 1087
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
D RL+ + + ++ + + G PL+ ITKQL+K P+
Sbjct: 1088 -DTRLEQVVQILQNVAKSVKEGTAPLSSFVITKQLSKNPDA 1127
Score = 179 bits (453), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/182 (45%), Positives = 121/182 (66%), Gaps = 3/182 (1%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
VFR ++LDA+E+ YK PGTVYLFGK +V ++++ SCC++V I R+IYLLPR +++K
Sbjct: 349 VFRFYYLDAYENPYKNPGTVYLFGKTYVSSHDTYCSCCIMVHCIPRRIYLLPR-KYIKNT 407
Query: 271 EP--VSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPAL 328
E ++ VY EFD+ A++ +I++F ++++K Y+F G P S+YLEVRY+A+ PA+
Sbjct: 408 ESQLTTMEDVYKEFDEYASKMRIMEFNCKEVKKHYSFEKEGTPKTSDYLEVRYNARYPAI 467
Query: 329 PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQME 388
SD SG VFGT + LE LL+ERKIKGP WL+ R +WC V + M+
Sbjct: 468 ESDYSGLAIERVFGTTVNALELLLIERKIKGPCWLDIKNVSPTAGRFAWCPQIVVASDMD 527
Query: 389 KI 390
I
Sbjct: 528 NI 529
Score = 93.2 bits (230), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 5/97 (5%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DKT + +A ++LK+ + G K KYE +N+Y+EV EKEY+ VLKRQ DDWI DDG
Sbjct: 11 VDKTGRLSALERLKEARSGG-KRKYEVEELKNIYDEVDEKEYSNTVLKRQRDDWIVDDGE 69
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNP 193
GY+EDGREIFDDD+++ + + RK+ N+ P
Sbjct: 70 SGYIEDGREIFDDDLDE----ESIQEARKQRHNMAGP 102
>gi|170060133|ref|XP_001865668.1| DNA polymerase alpha catalytic subunit [Culex quinquefasciatus]
gi|167878675|gb|EDS42058.1| DNA polymerase alpha catalytic subunit [Culex quinquefasciatus]
Length = 1495
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/396 (59%), Positives = 303/396 (76%), Gaps = 12/396 (3%)
Query: 404 EFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEK 463
+ I TM + Y ++++CE+NVLPLA+QIT + GN+++RTL GGR+ERNEFLLLHAF+EK
Sbjct: 746 QLIDLTMQDNFYTMRLLCEMNVLPLALQITQIAGNLMNRTLHGGRAERNEFLLLHAFNEK 805
Query: 464 SYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYP 523
Y+LPDK K E A + K + KAAYSGGLVL+P KGFYDKFI+LMDFNSLYP
Sbjct: 806 DYILPDKVQTKMGATQEAGEPAERRKPKSKAAYSGGLVLDPIKGFYDKFILLMDFNSLYP 865
Query: 524 SIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ 583
SIIQEYNICFTT+P + T L + GILP +++KLVESRR VK LMK
Sbjct: 866 SIIQEYNICFTTVPPPPPGEETPTIL------QTEEMGILPRQVRKLVESRRAVKQLMKA 919
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
P L + +MQY+IRQ ALKLTANS+YGCLG+ SRF+AQ +AAL+T KGREIL+NTKS+V
Sbjct: 920 PGLEPEQMMQYNIRQMALKLTANSLYGCLGYTRSRFYAQHMAALITQKGREILMNTKSIV 979
Query: 644 ENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK 703
E ++Y+VIYGDTDS+MI+ N+ DYD VFKIG IK N+ YK LELD+DG+YKY+LLLK
Sbjct: 980 EKMDYQVIYGDTDSIMINTNIVDYDQVFKIGASIKQFVNRTYKCLELDVDGIYKYLLLLK 1039
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
KKKYAA+SI+K +N + C+QE+KG+D+VRRDWS+LA AG FV+++IL +D +D
Sbjct: 1040 KKKYAAVSITK-ANNEFKCTQELKGLDIVRRDWSKLAVIAGNFVLAEIL-----SDKPMD 1093
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+R++NIH ++K++TDL G +LL+ITKQLT+A
Sbjct: 1094 ERIENIHAKLEKLKTDLLTGATYPSLLDITKQLTRA 1129
Score = 156 bits (395), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 121/203 (59%), Gaps = 9/203 (4%)
Query: 193 PNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQ 252
P+A D S+ E+ + R +F DA+ D K G +Y+FGKV K+ S CV V
Sbjct: 336 PDAMDTSI----SEESTETMRFWFWDAWTDPAKCQGEIYIFGKVATKKPGEFQSVCVHVL 391
Query: 253 NIDRKIYLLPRSEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPG-- 309
N+DR + LLPR + L + EPV++ VY+EF D I+T+ K+ ++K++K+ K +A+
Sbjct: 392 NVDRCMQLLPREKELDSDEPVTMLSVYNEFRDDISTRLKVTNYKTKKVRKNFAYTSGMAE 451
Query: 310 --VPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
VP S+YLEVRYSAK PA D T +H+FGT T+ +E LLERK+KGP W+E
Sbjct: 452 LEVPAESDYLEVRYSAKLPAPTLDRKYRTIAHIFGTNTNIVEQFLLERKVKGPCWMEIKN 511
Query: 368 AEKFPSRISWCKYEVQCNQMEKI 390
+K P+ S+CK E + I
Sbjct: 512 FKKNPAPSSYCKQEFTVPDISSI 534
Score = 76.3 bits (186), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDK +FAA ++L+ K GVK+ YE +NVY+EV E EY + +R +D++DDD G
Sbjct: 16 IDKHGRFAALERLRAAKATGVKNTYEVGEIQNVYDEVDESEYARIMNERAREDFVDDDDG 75
Query: 157 D--GYVEDGREIFDDDIE 172
GYVE+GRE+FD+D E
Sbjct: 76 SGYGYVENGREVFDEDEE 93
>gi|351697785|gb|EHB00704.1| DNA polymerase alpha catalytic subunit [Heterocephalus glaber]
Length = 1342
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/413 (56%), Positives = 309/413 (74%), Gaps = 30/413 (7%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 705 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 764
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ +K KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 765 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTSKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 824
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 825 LLDFNSLYPSIIQEFNICFTTVQRVVSEAQKVAEDGEQEQIPE-LPDPSLEMGILPREIR 883
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R++VK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 884 KLVERRKRVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 943
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGRE +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 944 TYKGRE-----------MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 992
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 993 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1052
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +IR ++ NG +P++ EI K LTK P+
Sbjct: 1053 GQILSDQSR-----DTIVENIQKKLIEIRENVLNGSIPVSQFEINKALTKDPQ 1100
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 86/185 (46%), Positives = 110/185 (59%), Gaps = 32/185 (17%)
Query: 198 DSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 257
+ LPL + ++VFR ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R
Sbjct: 333 NQLPLVKGSDEEQVFRFYWLDAYEDQYNQPGVVFLFGKVWIESAKTHVSCCVMVKNIERM 392
Query: 258 IYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYL 317
+Y LPR +EK YAF +P VP+ SEYL
Sbjct: 393 LYFLPR--------------------------------EMIVEKNYAFEIPDVPEKSEYL 420
Query: 318 EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISW 377
EVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE + ISW
Sbjct: 421 EVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQPISW 480
Query: 378 CKYEV 382
CK+E
Sbjct: 481 CKFEA 485
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A +KLK K G K+KYE +VYEEV E+ Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALEKLKKAKA-GEKYKYEVEDFTSVYEEVDEERYSKLVQARQDDDWIVDDDGTGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|157118267|ref|XP_001653143.1| DNA polymerase alpha catalytic subunit [Aedes aegypti]
gi|108875769|gb|EAT39994.1| AAEL008247-PA [Aedes aegypti]
Length = 1508
Score = 441 bits (1134), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/400 (59%), Positives = 303/400 (75%), Gaps = 11/400 (2%)
Query: 404 EFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEK 463
+ I TM + Y +++MCELNVLPLA+QIT + GN+++RTL GGR+ERNE+LLLHAF EK
Sbjct: 761 QLIGLTMQDNFYTMRLMCELNVLPLALQITQIAGNLMNRTLHGGRAERNEYLLLHAFTEK 820
Query: 464 SYVLPDKQYGKNK---KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
+++PDK ++G E + K + KAAYSGGLVL+P KGFYDKFI+LMDFNS
Sbjct: 821 DFIVPDKAPRAGPGFTQDGPELA-TERRKPKSKAAYSGGLVLDPIKGFYDKFILLMDFNS 879
Query: 521 LYPSIIQEYNICFTTI-PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
LYPSIIQEYNICFTT+ P + D + + + GILP +I+KLVESRR VK
Sbjct: 880 LYPSIIQEYNICFTTVLPPPPSEGGDDSEDANPVILETDEMGILPRQIRKLVESRRAVKQ 939
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK L +L MQY+IRQ ALKLTANS+YGCLG+ SRF+AQ +AAL+T KGREIL+NT
Sbjct: 940 LMKASGLEPELKMQYNIRQMALKLTANSLYGCLGYTRSRFYAQHMAALITQKGREILMNT 999
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
KS+VE +NY+VIYGDTDS+MI+ N DYD VFKIG IK NK YK LELD+DG+YKY+
Sbjct: 1000 KSIVEKMNYQVIYGDTDSIMINTNSIDYDEVFKIGANIKQIVNKTYKCLELDVDGIYKYL 1059
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LLLKKKKYAA+SI+K+ + ++ C+QE+KG+D+VRRDWS+LA AG FVIS+IL +D
Sbjct: 1060 LLLKKKKYAAVSIAKVGD-EIKCTQELKGLDIVRRDWSKLAVIAGNFVISEIL-----SD 1113
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+DDR++NIH ++K+R DL NG +LLEITKQLT++
Sbjct: 1114 KPMDDRIENIHTKLEKLRDDLLNGVTYPSLLEITKQLTRS 1153
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 14/195 (7%)
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFV-KENNSHSSCCVIVQNIDRKIYLLPR------SE 265
R +F DA+ D K+ G +Y+FGK+ + N S C+ VQN+DR +Y+L R S
Sbjct: 360 RFWFWDAWSDPSKRQGEIYIFGKMATGNKANEFQSVCIHVQNVDRCMYMLAREKEYNPSS 419
Query: 266 HLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAF-----NLPGVPDLSEYLEV 319
T + VS+ V++EF + I+T K+ +++R + K +A+ NL +P SEYLEV
Sbjct: 420 KTTTDKDVSMLDVFNEFCNDISTSLKVTKYRTRVVTKNFAYTSGMANL-QIPAQSEYLEV 478
Query: 320 RYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCK 379
RYSAK P ++ T SH+FGT T+ +E LLERK+KGP W+ +K S S+CK
Sbjct: 479 RYSAKLPPPDTERKYRTISHIFGTNTNVVEQFLLERKVKGPCWMTMKNFKKSNSPASYCK 538
Query: 380 YEVQCNQMEKIRSKQ 394
E + ++ I Q
Sbjct: 539 VEYEVPEINCISVAQ 553
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 58/80 (72%), Gaps = 3/80 (3%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDK +FAA +KL+++K G KHKYE +NVY+EV E EY + V +R +D++DDD G
Sbjct: 16 IDKHGRFAALEKLRNVKAAGGKHKYEVDEVKNVYDEVDESEYAKIVNERAREDFVDDDDG 75
Query: 157 D--GYVEDGREIFD-DDIED 173
GYVE+GRE+FD D++ED
Sbjct: 76 CGYGYVENGREVFDEDELED 95
>gi|307165839|gb|EFN60202.1| DNA polymerase alpha catalytic subunit [Camponotus floridanus]
Length = 1478
Score = 437 bits (1123), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/401 (53%), Positives = 292/401 (72%), Gaps = 16/401 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I+ I T+ + +II I+ +LN++PLA+QIT++ GN+LSRTL+GGR+ERNE+LLLHAFH
Sbjct: 765 ILNLIHMTLKEAKFIITIVIDLNIIPLALQITSLAGNILSRTLLGGRAERNEYLLLHAFH 824
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
K Y+ PDK+ K ++ + G RK AAY GGLVL+PKKGFYDK ++LMDFNSL
Sbjct: 825 LKDYITPDKKIEKKARDDD-------GPRRKAAAYIGGLVLDPKKGFYDKLVLLMDFNSL 877
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
YPSIIQEYN+CFTT+P D + ++ PE ++ G++P+EI KLV+SR+Q+K LM
Sbjct: 878 YPSIIQEYNLCFTTVPGAAYADVEQLSI----PESNLEAGVIPTEIHKLVKSRQQIKQLM 933
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K PNL+ + M Y IRQ ALKLTANSMYGCLG + RF+A+ LAAL+T KGR+IL +TK
Sbjct: 934 KTPNLTPEQKMDYHIRQMALKLTANSMYGCLGATHCRFYAKGLAALITTKGRQILEDTKH 993
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
LVE L YEVIYGDTDSLMI+ N+ +YD VF IG +I E N YK++ELDIDGV++Y+LL
Sbjct: 994 LVEKLQYEVIYGDTDSLMINTNILEYDDVFSIGRKIMREVNNRYKKVELDIDGVFRYLLL 1053
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
L+KKKYAA++++KL NG+M QE KG+D+VRRDW LA + GK V+ +L +Q+
Sbjct: 1054 LQKKKYAAVAMTKLPNGQMQLIQEHKGLDIVRRDWCPLACDTGKKVLDILLCDQAS---- 1109
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ RL+ + + ++ + + G PL+ ITKQL+K P+
Sbjct: 1110 -ETRLEQVVQILQNVAKGVREGTTPLSAFVITKQLSKNPDA 1149
Score = 177 bits (448), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 121/185 (65%), Gaps = 6/185 (3%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT- 269
VFR ++LDA+E+ YK PGTVYLFGK +V +++ + SCCV+V I R+IYLLPR +++KT
Sbjct: 368 VFRFYYLDAYENPYKNPGTVYLFGKTYVSKHDVYCSCCVMVHCIPRRIYLLPR-KYIKTS 426
Query: 270 --KEP--VSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
EP +I VY EFD+ A + +I++F ++ +K Y+F G P S+YLE+RY+A+
Sbjct: 427 KNNEPQLTTIEDVYKEFDEYANKMRIMEFNCKETKKHYSFEKEGTPRTSDYLEIRYNARY 486
Query: 326 PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 385
PA+ +D SG VFGT + LE LL+ERKIKGP WL+ R +WC V +
Sbjct: 487 PAIDADYSGPAIERVFGTTVNALELLLIERKIKGPCWLDIKNISPTAGRFAWCSQIVVTS 546
Query: 386 QMEKI 390
M+ I
Sbjct: 547 DMDNI 551
Score = 98.6 bits (244), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 5/97 (5%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDKT + +A +KLK+++ G K KYE ENVY+EV EKEY+ VLKRQ DDWI DDG
Sbjct: 17 IDKTGRLSALEKLKEIRSGG-KRKYEIEELENVYDEVDEKEYSNTVLKRQRDDWIVDDGE 75
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNP 193
GY+EDGREIFDDD+++ + + RK+ N+ P
Sbjct: 76 SGYIEDGREIFDDDLDE----ESIQEARKQRHNMAGP 108
>gi|348512198|ref|XP_003443630.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Oreochromis
niloticus]
Length = 1430
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 244/434 (56%), Positives = 314/434 (72%), Gaps = 20/434 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNEFLLLHAFH
Sbjct: 711 LLYLLELTWTDAKLILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEFLLLHAFH 770
Query: 462 EKSYVLPDKQYGKNKK----EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
EK Y++PDK K + EGE+ +A KGK +KKAAY+GGLVL+PK GFYDKF++L+D
Sbjct: 771 EKDYIVPDKPSFKKAQLETAEGEDDVDAGKGKRKKKAAYAGGLVLDPKVGFYDKFVLLLD 830
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSD------ITTLCEYLPEHQVDTGILPSEIKKLV 571
FNSLYPSIIQE+NICFTT+ R Q+S +P+ ++ GILP EI+KLV
Sbjct: 831 FNSLYPSIIQEFNICFTTV-QREAQNSQKKKEEDEPEEIPEIPDPNLEMGILPKEIRKLV 889
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
E R+QVK LMKQ +++ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT K
Sbjct: 890 ERRKQVKGLMKQQDINPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHK 949
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREIL++TK +V+ +N EVIYGDTDS+MI+ N D VFK+GN++K+E NKLYK LE+D
Sbjct: 950 GREILMHTKDMVQKMNLEVIYGDTDSIMINTNSKCLDEVFKLGNKVKAEVNKLYKLLEID 1009
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
IDGV+K +LLLKKKKYAAL + G+ QE+KG+D+VRRDW LA E G +VI QI
Sbjct: 1010 IDGVFKSLLLLKKKKYAALVVEPNGEGRFSVKQELKGLDIVRRDWCDLAKECGNYVIGQI 1069
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG----GKVCI 807
L +QS D ++NI +H+ ++ + +G +PL EI K LTK P+ +
Sbjct: 1070 LSDQSR-----DVIVENIQKHLVELGEKVASGDIPLNQYEIHKALTKDPQDYPDKKSLPH 1124
Query: 808 TQIRLSRNRRGRRR 821
+ L N +G RR
Sbjct: 1125 VHVALWINSQGGRR 1138
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 102/188 (54%), Positives = 133/188 (70%), Gaps = 6/188 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VFR ++LDAFED Y QPG VYLFGKV+++ SH SCCV V+NI+R +Y
Sbjct: 303 LPLVEGPDGEQVFRFYWLDAFEDPYNQPGVVYLFGKVWIESAKSHVSCCVSVKNIERTMY 362
Query: 260 LLPRS--EHLKTKE----PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDL 313
LLPR + +T E PV + VY EF++++ ++KI+ FKS+K+EK YAF +P VP
Sbjct: 363 LLPREYKTNPRTGEVSNTPVGMMDVYQEFNELSEKFKIMKFKSKKVEKNYAFEIPDVPTQ 422
Query: 314 SEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS 373
EYLEVRYSA+ P+LPSDL G TFSH+FGT TS LE+ LL RKIKGP WL+ +
Sbjct: 423 CEYLEVRYSAEFPSLPSDLKGATFSHIFGTNTSRLEHFLLSRKIKGPCWLDIKSPQLMNQ 482
Query: 374 RISWCKYE 381
+SWCK E
Sbjct: 483 PVSWCKVE 490
Score = 68.6 bits (166), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 38/52 (73%)
Query: 116 GVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIF 167
G K KYE +VYEEV E EY++ V +RQEDDWI DD G GYVEDGREIF
Sbjct: 2 GEKIKYEVKEFSSVYEEVDEDEYSKMVRERQEDDWIIDDDGTGYVEDGREIF 53
>gi|410908891|ref|XP_003967924.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Takifugu
rubripes]
Length = 1467
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 237/433 (54%), Positives = 311/433 (71%), Gaps = 18/433 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + I+++MCELNVLPLA+QITN+ GNV+SRTLMGGRSERNEFLLLHAFH
Sbjct: 750 LLRLLELTWTDAKLILQMMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEFLLLHAFH 809
Query: 462 EKSYVLPDKQYGKNKK----EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
EK+Y++PDK K + EGE+ G KGK +KKAAY+GGLVL+PK GFYDKF++L+D
Sbjct: 810 EKNYIVPDKPSFKKTQLEMAEGEDEGAVGKGKRKKKAAYAGGLVLDPKVGFYDKFVLLLD 869
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQ-----DSDITTLCEYLPEHQVDTGILPSEIKKLVE 572
FNSLYPSIIQE+NICFTT+ L + + +P+ ++ GILP EI+KLVE
Sbjct: 870 FNSLYPSIIQEFNICFTTVQREALNLQRKNEEEDQEEIPEIPDSSLEMGILPKEIRKLVE 929
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
R+QVK LMKQ +++ D +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KG
Sbjct: 930 RRKQVKQLMKQQDINPDAYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKG 989
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL++TK +V+ +N +VIYGDTDS+MI+ N + VFK+GN++K+E NKLYK LE+DI
Sbjct: 990 REILMHTKEMVQKMNLDVIYGDTDSIMINTNSKSLEEVFKLGNKVKAEVNKLYKLLEIDI 1049
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DGV+K +LLLKKKKYAAL + +G+ QE+KG+D+VRRDW LA E G +VI QIL
Sbjct: 1050 DGVFKSLLLLKKKKYAALVVENHGDGRYTLKQELKGLDIVRRDWCDLAKECGNYVIGQIL 1109
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG----GKVCIT 808
+QS D ++NI +H+ ++ + G +PL EI K L K P+ +
Sbjct: 1110 SDQSR-----DVIVENIQKHLVEMGEKVAAGDIPLNQYEIHKALAKDPQDYPDKKSLPHV 1164
Query: 809 QIRLSRNRRGRRR 821
+ L N +G RR
Sbjct: 1165 HVALWINSQGGRR 1177
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 99/188 (52%), Positives = 132/188 (70%), Gaps = 6/188 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + + ++VFR ++LDAFE+ Y PG VYLFGKV+++ SH SCCV V+NI+R +Y
Sbjct: 342 LPLVEEPDGEQVFRFYWLDAFEEPYSHPGVVYLFGKVWIESAKSHVSCCVTVRNIERTMY 401
Query: 260 LLPRSEHLKTKE------PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDL 313
LLPR + K PV + VY EF++++ ++KI+ +KS+K+EK YAF +P V
Sbjct: 402 LLPREYRVNPKTGEVSDTPVGMMDVYQEFNELSEKFKIMKYKSKKVEKNYAFEIPDVSSH 461
Query: 314 SEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS 373
EYLEVRYSA+ PALPSDL TFSH+FGT TSFLE+LLL RKIKGP WL+ ++
Sbjct: 462 GEYLEVRYSAEFPALPSDLKASTFSHIFGTNTSFLEHLLLSRKIKGPCWLDVTTPQRMSQ 521
Query: 374 RISWCKYE 381
+SWCK E
Sbjct: 522 PVSWCKVE 529
Score = 72.0 bits (175), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 39/46 (84%)
Query: 128 NVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIED 173
+VYEEV E++Y++ V RQEDDWI DD G GYVEDGREIFDDD+E+
Sbjct: 65 SVYEEVDEEQYSKLVRDRQEDDWIVDDDGIGYVEDGREIFDDDLEE 110
>gi|47223504|emb|CAF97991.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1753
Score = 427 bits (1098), Expect = e-116, Method: Compositional matrix adjust.
Identities = 234/446 (52%), Positives = 306/446 (68%), Gaps = 52/446 (11%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVL----------------SRTLM 445
++ ++ T + I+++MCELNVLPLA+QITN+ GN++ SRTLM
Sbjct: 957 LLRLLELTWTDAKLILQMMCELNVLPLALQITNIAGNIMVAHPRALFTVKERERESRTLM 1016
Query: 446 GGRSERNEFLLLHAFHEKSYVLPDKQYGK----NKKEGEETGEANKGKGRKKAAYSGGLV 501
GGRSERNEFLLLHAFHEK+Y++PDK K ++ EG+E E KGK RKKAAY+GGLV
Sbjct: 1017 GGRSERNEFLLLHAFHEKNYIVPDKPSFKKAQLDQAEGDEEVEVAKGKRRKKAAYAGGLV 1076
Query: 502 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS------DITTLCEYLPE 555
L+PK GFYDKF++L+DFNSLYPSIIQE+NICFTT+ R Q S D +P+
Sbjct: 1077 LDPKVGFYDKFVLLLDFNSLYPSIIQEFNICFTTV-QREAQHSQKKNEDDEQEEIPEIPD 1135
Query: 556 HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFP 615
++ GILP EI+KLVE R+QVK LMKQ +++ D+ +QYDIRQKALKLTANSMYGCLGF
Sbjct: 1136 SNLEPGILPKEIRKLVERRKQVKGLMKQQDINPDVYLQYDIRQKALKLTANSMYGCLGFS 1195
Query: 616 NSRFFAQPLAALVTAKGREILLNT---------KSLVEN-----------LNYEVIYGDT 655
SRF+A+PLAALVT KGRE+ + +S +N +N +VIYGDT
Sbjct: 1196 YSRFYAKPLAALVTHKGREVDFDAHQRDGPEVLRSANKNAQICFPSRPIQMNLDVIYGDT 1255
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKL 715
DS+MI+ N + VFK+GN++K+E NKLYK LE+DIDGV+K +LLLKKKKYAAL + L
Sbjct: 1256 DSIMINTNSKSLEEVFKLGNKVKAEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVENL 1315
Query: 716 SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKK 775
+G+ QE+KG+D+VRRDW LA + G +VI QIL +QS D ++NI +H+ +
Sbjct: 1316 GDGRYSLKQELKGLDIVRRDWCDLAKDCGNYVIGQILSDQSR-----DVIVENIQKHLVE 1370
Query: 776 IRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + G VPL+ EI K LTK P+
Sbjct: 1371 VGEKVAAGDVPLSQYEIHKALTKDPQ 1396
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 71/131 (54%), Gaps = 34/131 (25%)
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSR--------------------------KIEKK 302
++ PV++ VY EF++++ ++KI+ +KS+ ++EK
Sbjct: 506 SEAPVAMMDVYQEFNELSEKFKIMKYKSKVGVGARGGGALGDGALTAACSISCFQRVEKN 565
Query: 303 YAFNLPGVPDLSEYLEV--------RYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLE 354
YAF +P VP EYLEV A PALPS+L TFSHVFGT TSFLE LLL
Sbjct: 566 YAFEIPDVPSRCEYLEVPILGEHCGALQADFPALPSNLKASTFSHVFGTNTSFLEQLLLS 625
Query: 355 RKIKGPSWLEF 365
RKIKGP WL
Sbjct: 626 RKIKGPCWLHL 636
Score = 72.4 bits (176), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 4/64 (6%)
Query: 116 GVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDI-EDV 174
GV E T +VYEEV E++Y++ V RQEDDWI DD G GYVEDGREIFDDD+ EDV
Sbjct: 46 GVSQVEELT---SVYEEVDEEQYSKLVRDRQEDDWIVDDDGIGYVEDGREIFDDDLDEDV 102
Query: 175 PQKK 178
+ K
Sbjct: 103 MENK 106
>gi|317419845|emb|CBN81881.1| DNA polymerase alpha catalytic subunit [Dicentrarchus labrax]
Length = 1425
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 233/409 (56%), Positives = 305/409 (74%), Gaps = 15/409 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + I+++MCELNVLPLA+QITN+ GNV+SRTLMGGRSERNEFLLLHAFH
Sbjct: 687 LLYLLELTWTDAKLILQMMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEFLLLHAFH 746
Query: 462 EKSYVLPDKQYGKNKK----EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
+K+Y++PDK + + EGE+ +A KGK +KKAAY+GGLVL+PK GFYDKF++L+D
Sbjct: 747 DKNYIVPDKPSFRKAQLDTVEGEDM-DAGKGKRKKKAAYAGGLVLDPKVGFYDKFVLLLD 805
Query: 518 FNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVE 572
FNSLYPSIIQE+NICFTT+ + + D +P+ +D GILP EI+KLVE
Sbjct: 806 FNSLYPSIIQEFNICFTTVQREAHSTQKKNEEDEAEEIPEIPDSNLDMGILPKEIRKLVE 865
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
R+QVK LMKQ +++ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KG
Sbjct: 866 RRKQVKQLMKQQDINPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKG 925
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL++TK +V+ +N EVIYGDTDS+MI+ N + VFK+GN++K+E NKLYK LE+DI
Sbjct: 926 REILMHTKDMVQKMNLEVIYGDTDSIMINTNSRSLEEVFKLGNKVKAEVNKLYKLLEIDI 985
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DGV+K +LLLKKKKYAAL + G+ QE+KG+D+VRRDW LA E G +VI QIL
Sbjct: 986 DGVFKSLLLLKKKKYAALVVENHGEGRYSVKQELKGLDIVRRDWCDLAKECGNYVIGQIL 1045
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+Q+ D ++NI +H+ ++ + G +PL EI K LTK P+
Sbjct: 1046 SDQNR-----DVIVENIQKHLVEVGEKVAAGDIPLNQYEIHKALTKDPQ 1089
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 100/188 (53%), Positives = 129/188 (68%), Gaps = 6/188 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + ++VFR ++LDAFED Y QPG VYLFGKV+++ SH SCCV V+NI+R +Y
Sbjct: 279 LPLVEGADGEQVFRFYWLDAFEDPYSQPGVVYLFGKVWIESAMSHVSCCVTVKNIERTMY 338
Query: 260 LLPRSEHLKTKE------PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDL 313
LPR + TK PV + VY EF+ ++ +++I+ FKS+K+EK YAF +P VP
Sbjct: 339 FLPREYKVNTKTGEVSDTPVGLMDVYQEFNDLSEKFRIMKFKSKKVEKNYAFEIPDVPSQ 398
Query: 314 SEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS 373
EYLEVRYSA+ PALP DL G TFSH+FGT TS LE+ LL RKIKGP WL+ +
Sbjct: 399 CEYLEVRYSAEFPALPLDLKGATFSHIFGTNTSSLEHFLLSRKIKGPCWLDIKTPQLISQ 458
Query: 374 RISWCKYE 381
+SWCK E
Sbjct: 459 PVSWCKVE 466
Score = 67.8 bits (164), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 39/52 (75%)
Query: 116 GVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIF 167
G K KYE +VYEEV E++Y++ V +RQEDDWI DD G GYVEDGREIF
Sbjct: 2 GEKIKYEVEEFTSVYEEVDEQQYSKMVRERQEDDWIIDDDGTGYVEDGREIF 53
>gi|449678979|ref|XP_002158235.2| PREDICTED: DNA polymerase alpha catalytic subunit [Hydra
magnipapillata]
Length = 1531
Score = 420 bits (1079), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/410 (55%), Positives = 292/410 (71%), Gaps = 18/410 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
++ + + + Y ++IM ELN+LPLA QIT +CGNV+SRTL+GGRSERNE+LLLHAF
Sbjct: 839 NLLNMLNYNRADAMYQLQIMYELNILPLAYQITGICGNVMSRTLLGGRSERNEYLLLHAF 898
Query: 461 HEKSYVLPDKQYGKNK--------KEGEETGEANKG-KGRKKAAYSGGLVLEPKKGFYDK 511
+K+Y+LPDK YG K K+ ++TG + K K RKK Y+GGLVLEPKKGFYDK
Sbjct: 899 FKKNYILPDKSYGAKKDFKLNEKDKDVKQTGVSKKPQKSRKKPTYAGGLVLEPKKGFYDK 958
Query: 512 FIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+I+L+DFNSLYPSIIQEYNICFTTI + + PE ++ P E+ +LV
Sbjct: 959 YILLLDFNSLYPSIIQEYNICFTTISRETFSNGAEVKIS---PEWSLELWEQP-EVTRLV 1014
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
E R+QVK L+K SDL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT K
Sbjct: 1015 ERRKQVKQLLKTAPQQSDLYLQYDIRQKALKLTANSMYGCLGFSESRFYAKPLAALVTMK 1074
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREIL+ TK L + L EVIYGDTDS+MI+ N ND + V KIG+++KSE NKLY+ LE+D
Sbjct: 1075 GREILMKTKDLAQALGLEVIYGDTDSIMINTNSNDLNEVRKIGSKVKSEVNKLYRTLEID 1134
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
IDG++K MLLLKKKKYAA+ + +GK++ E+KG+D+VRRDW LA E+G +VI++I
Sbjct: 1135 IDGIFKSMLLLKKKKYAAVVVEIKDDGKLVEHTEMKGLDIVRRDWCGLAKESGSYVINEI 1194
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L + D L+NIHE ++ + L NG V + EI K LTK P+
Sbjct: 1195 LSSKPR-----DVILENIHEFLRDVAKKLSNGEVEMEKFEINKCLTKNPD 1239
Score = 166 bits (419), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 123/192 (64%), Gaps = 19/192 (9%)
Query: 193 PNAKDDSLPLATDHEN-KKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIV 251
P+ S L T + N V R F+LDA+ED + QPGTVYLFGKV+++ + + SCCV V
Sbjct: 441 PDTSSISSSLPTSNINGDDVLRFFWLDAYEDRFSQPGTVYLFGKVWIEASKCYVSCCVAV 500
Query: 252 QNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP 311
+NIDR++Y+LPR L +IA+ KI++FK RK+ KKYAF+ VP
Sbjct: 501 KNIDRQLYILPRKTELHQG---AIAK-----------NKIMEFKCRKVLKKYAFDKVEVP 546
Query: 312 DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE--FPEAE 369
+EYLE+ YSA P L SDL G+TFSH+FG+ T+ LE L L +K++GPSW++ FP+
Sbjct: 547 YEAEYLELLYSADQPQLQSDLKGETFSHIFGSNTTSLELLFLNQKLQGPSWIDVKFPQIP 606
Query: 370 KFPSRISWCKYE 381
K +SWCK E
Sbjct: 607 K--QAVSWCKVE 616
Score = 43.1 bits (100), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 38/50 (76%)
Query: 126 DENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIEDVP 175
+E+VYE V E +Y + V RQE++WI DD G GYV+DGREIFDDD ++P
Sbjct: 159 EEDVYELVDEDKYAQLVQDRQEEEWIVDDDGGGYVDDGREIFDDDPNEIP 208
>gi|198422811|ref|XP_002123526.1| PREDICTED: similar to DNA polymerase alpha catalytic subunit, partial
[Ciona intestinalis]
Length = 1375
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 236/440 (53%), Positives = 304/440 (69%), Gaps = 25/440 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
++ ++ T+L ++ + ELN LPLA+QITN+ GNVLSRTLMGGRSERNEFLLLHAF
Sbjct: 659 SLLWLVEHTLLDANLSLDCCYELNALPLALQITNIAGNVLSRTLMGGRSERNEFLLLHAF 718
Query: 461 HEKSYVLPDK-----------QYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFY 509
HE+ ++ PDK G +K E T + RKKAAY GGLVLEPK+GFY
Sbjct: 719 HERGFIPPDKIKRSKDNLLVRHPGVSKPTSEATS-----RPRKKAAYEGGLVLEPKRGFY 773
Query: 510 DKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD--ITTLCEYLPEHQVDTGILPSEI 567
DKFI+L+DFNSLYPSIIQE+NICFTT+ + D+D + +PE ++ G+LP+EI
Sbjct: 774 DKFILLLDFNSLYPSIIQEFNICFTTLDLHPPTDADNDFESYIPDVPETGLEPGVLPTEI 833
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
+KLV+ RRQVK LMK +S + QYDIRQKALKLTANSMYGCLGF NSRF+A+PLAAL
Sbjct: 834 RKLVQRRRQVKQLMKTVTISKEQYTQYDIRQKALKLTANSMYGCLGFSNSRFYAKPLAAL 893
Query: 628 VTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ 687
VT +GREILL+TK LVE + EVIYGDTDS+MI+ N D D+ FK+GNQ+KSE NKLY+
Sbjct: 894 VTRQGREILLHTKELVEKMGLEVIYGDTDSIMINTNSTDLDNAFKLGNQVKSEVNKLYRL 953
Query: 688 LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFV 747
LE+DIDGVYK +LLLKKKKYAALS+ K +G QE+KG+D+VRRDW LA AG F
Sbjct: 954 LEIDIDGVYKSLLLLKKKKYAALSVQKSIDGSFSTVQELKGLDIVRRDWCDLAKMAGNFA 1013
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKV 805
+++IL +D + ++ IHE++++I + L EI K+LTK P GK
Sbjct: 1014 VNRIL-----SDEPREYIVEKIHENLEEIGRKVKENMFELEKFEIRKELTKDPNLYPGKD 1068
Query: 806 CITQIRLSRNRRGRRRRRRK 825
+ +R++ +R K
Sbjct: 1069 NLPHVRVALRVNSSMTKRLK 1088
Score = 206 bits (523), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 139/211 (65%), Gaps = 5/211 (2%)
Query: 186 KNKNIQNP----NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKEN 241
K K+++ P N +LP D E KVFR ++L+A+ED +KQPG VYLFGKV+++
Sbjct: 239 KEKSVETPIVDVNIDSTNLPTVLDKEYNKVFRFYWLEAYEDQFKQPGVVYLFGKVYIESA 298
Query: 242 NSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIE 300
H SCC+IV+N++RKI++LPRS++ T E V+ VY EFD +AT Y+I+ +K++ +E
Sbjct: 299 KGHVSCCIIVRNVERKIFVLPRSKNRVTGEDVTPEDVYREFDAHVATNYRIMKYKTKVLE 358
Query: 301 KKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGP 360
KKY F +P ++YLE+ YSA LPSD+SGDTF VFGT S LE LL++RK+KGP
Sbjct: 359 KKYVFGERDIPHEAQYLEITYSADHRPLPSDISGDTFKCVFGTNQSPLEALLIDRKMKGP 418
Query: 361 SWLEFPEAEKFPSRISWCKYEVQCNQMEKIR 391
WL+ E + S +SWCK EV I
Sbjct: 419 CWLDIHEPQIHTSNVSWCKVEVNVTSTSTIH 449
>gi|156379319|ref|XP_001631405.1| predicted protein [Nematostella vectensis]
gi|156218445|gb|EDO39342.1| predicted protein [Nematostella vectensis]
Length = 1242
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/393 (55%), Positives = 278/393 (70%), Gaps = 14/393 (3%)
Query: 413 SSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY 472
S ++IM ELNVLPLA QIT + GNVLSRTL+GGRS+RNEFLLLHAFHEK Y+ PDK Y
Sbjct: 545 SLLTLRIMYELNVLPLAHQITTIAGNVLSRTLLGGRSKRNEFLLLHAFHEKGYICPDKSY 604
Query: 473 GKNK--KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYN 530
GK + +E ++ KGR+K AY+GGLVLEPKKGFYDKFI+L+DFNSLYPSIIQEYN
Sbjct: 605 GKKQVVREDDDDHVTTTKKGRRKPAYAGGLVLEPKKGFYDKFILLLDFNSLYPSIIQEYN 664
Query: 531 ICFTTIPVRMLQD--SDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
ICFTTI + +D DI L P+ D GILP+EI+KLVE RRQVK +MK + S
Sbjct: 665 ICFTTIDRKSAKDEEDDIVDL----PDMDQDPGILPTEIRKLVERRRQVKGMMKTVSRDS 720
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNY 648
D +QYDIRQKALKLTANSMYGCLGF +SRF+A+PLAALVT+KGREIL+ TK LV+ ++
Sbjct: 721 DKYLQYDIRQKALKLTANSMYGCLGFSHSRFYAKPLAALVTSKGREILMKTKDLVQQMHL 780
Query: 649 EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYA 708
+VIYGDTDS+MI+ N D V K+GN+++ + Y L + + +L + +YA
Sbjct: 781 DVIYGDTDSIMINTNSTDLQEVKKVGNKVRHP-HATYLVLPVSYTLRFVNLLHILFSRYA 839
Query: 709 ALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 768
A+ IS+ +G M +E+KG+D+VRRDW LA +AG +V+SQIL QS + + N
Sbjct: 840 AIMISENEDGTMNEVKEMKGLDIVRRDWCDLAKDAGNYVLSQILSAQSR-----EAIVDN 894
Query: 769 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+H+ + I D+ G V L I KQLTKAP
Sbjct: 895 VHDFLITIGEDVKGGKVDLQKYVINKQLTKAPH 927
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 80/120 (66%), Gaps = 6/120 (5%)
Query: 210 KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL-- 267
K + ++ DA+ED KQPG VYLFGKV ++ + SCCV ++NIDR I++LPR + +
Sbjct: 184 KFLQFYWFDAYEDRIKQPGVVYLFGKVKIESAGKYVSCCVTIKNIDRNIFILPREKRIGA 243
Query: 268 ---KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSA 323
+++ V VY EF++ IA++ KI+ F RK+EK YAF++ +P SEYLEVRYS
Sbjct: 244 DGSESENSVGFKDVYEEFNEKIASKNKIMKFVCRKVEKSYAFDIEDIPTSSEYLEVRYSV 303
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 51/71 (71%), Gaps = 4/71 (5%)
Query: 128 NVYEEVSEKEYTERVLKRQEDDWI-DDDGGDGYVEDGREIFDDDI-EDVPQKKEKHDKRK 185
+VY V E+EY++ V +RQE+DW+ DDDG GYVEDGREIFDDD+ E+ QK KH +
Sbjct: 13 DVYRVVDEEEYSDIVRQRQEEDWVVDDDGAGGYVEDGREIFDDDLDEEEVQKGPKH--KP 70
Query: 186 KNKNIQNPNAK 196
K +N++ P K
Sbjct: 71 KKQNVKKPTVK 81
>gi|344251522|gb|EGW07626.1| hypothetical protein I79_016081 [Cricetulus griseus]
Length = 1016
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 221/376 (58%), Positives = 278/376 (73%), Gaps = 29/376 (7%)
Query: 439 VLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK--NKKEGEET----GEANK-GKGR 491
++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ + +K G+E G+ NK KGR
Sbjct: 500 LVSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEVDGDTNKYKKGR 559
Query: 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCE 551
KKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+ L+ + TT E
Sbjct: 560 KKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVALEVQNSTTEDE 619
Query: 552 Y------LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 605
LP+ +D GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTA
Sbjct: 620 EQEQIPELPDPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTA 679
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN 665
NSMYGCLGF SRF+A+PLAALVT KGRE +N EVIYGDTDS+MI+ N
Sbjct: 680 NSMYGCLGFSYSRFYAKPLAALVTYKGRE-----------MNLEVIYGDTDSIMINTNST 728
Query: 666 DYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQE 725
+ D VFK+GN++K+E NKLYK LE+DIDGV+K +LLLKKKKYAAL + S+G I QE
Sbjct: 729 NLDEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYITKQE 788
Query: 726 IKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFV 785
+KG+D+VRRDW LA + G FVI QIL +QS D ++NI + + +I ++ NG +
Sbjct: 789 LKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEIGENVLNGSI 843
Query: 786 PLTLLEITKQLTKAPE 801
P++ EI K LTK P+
Sbjct: 844 PVSQFEINKALTKDPQ 859
Score = 106 bits (264), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 32/133 (24%)
Query: 190 IQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCV 249
+Q LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+V+ +H SCCV
Sbjct: 371 VQEVQVDSTHLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWVESAQTHVSCCV 430
Query: 250 IVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPG 309
+V+NI+R +Y LPR +EK YAF +P
Sbjct: 431 MVKNIERTLYFLPR--------------------------------EMTVEKNYAFEIPD 458
Query: 310 VPDLSEYLEVRYS 322
VP+ SEYLEVRYS
Sbjct: 459 VPEKSEYLEVRYS 471
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 86 ALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGTGYVEDGR 144
Query: 165 EIF 167
EIF
Sbjct: 145 EIF 147
>gi|391331432|ref|XP_003740150.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Metaseiulus
occidentalis]
Length = 1500
Score = 397 bits (1020), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/400 (50%), Positives = 280/400 (70%), Gaps = 10/400 (2%)
Query: 405 FIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS 464
K M S ++IK++ ELN+LPLA QIT +CGN L++TL GR+ RNE+LLLHAF K+
Sbjct: 769 LCKHIMHESQFVIKLLAELNILPLASQITTICGNTLTQTLQKGRALRNEYLLLHAFTSKN 828
Query: 465 YVLPDKQY--GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
+++PDK+ + KK+ E E G +K AYSGGLVL+P GFYD ++LMDFNSLY
Sbjct: 829 FIVPDKESRRAQKKKQQNEADEGKTGDKKKGPAYSGGLVLDPIVGFYDSMVLLMDFNSLY 888
Query: 523 PSIIQEYNICFTTI---PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
PSIIQEYN+CFTT P + +P VDTG+LP EI+KLVE+RR VK
Sbjct: 889 PSIIQEYNLCFTTCALTPPEDNAAAAEADWEAQIPPATVDTGVLPFEIRKLVENRRTVKD 948
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
L+K PNLS + +QYDIRQKALKLTANSMYGCLGF SRF+A+P+AAL+T +GR+IL++
Sbjct: 949 LLKTPNLSREKKLQYDIRQKALKLTANSMYGCLGFQGSRFYAKPIAALITQRGRDILMSA 1008
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
KS+ E++ Y +IYGDTDS+MI+ D V +IG ++ N YK+LE+++DGV+K M
Sbjct: 1009 KSMAESMGYSIIYGDTDSIMINTCTRDIAQVKEIGKKLSKAINDQYKRLEIEVDGVFKSM 1068
Query: 700 LLLKKKKYAALSISKLSNGKMICSQ-EIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
LLLKKKKYAA +++ L +G + + E+KG+D+VRRDWS+LA + G+FV+ +L +
Sbjct: 1069 LLLKKKKYAAHTLTFLPDGSLAGGKIEVKGLDIVRRDWSELARKTGRFVVDTLLKGE--- 1125
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
S DD + +H+H++++ +++ +P ITKQLTK
Sbjct: 1126 -LSADDAVDAVHDHLREVGKKVNDNALPFEDYVITKQLTK 1164
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 149/276 (53%), Gaps = 25/276 (9%)
Query: 124 TADENVYEEVSEKEYTERVLKRQEDDWID-DDGGDGYVEDGREIFD-DDIEDVPQKKEKH 181
DEN E + + +K +E ++ G+ E F+ DD +D P+ K +
Sbjct: 295 VPDENTVREEDDPKPVVPTIKAEEVSQLEGPSSAGGFKEVNMNSFNEDDFDDEPEVKPQT 354
Query: 182 DKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKEN 241
+ LP++ + + + VFR+F+LDA+E+ Y PGTVY+FGK V +
Sbjct: 355 AAKLPA-----------DLPVSENPDGETVFRLFWLDAYEEPYAHPGTVYVFGKTTV--S 401
Query: 242 NSHSSCCVIVQNIDRKIYLLPRSEHLKTKE--PVSIAQVYSEFDQIATQYKILDFKSRKI 299
NS S ++V+NI RK++ LPR + P+ VY E ++ Q+ I +F+ ++
Sbjct: 402 NSSVSAAIVVKNIPRKLFFLPRERENENGMMCPIPFKSVYDEVKEVLKQHGIKEFRCKES 461
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPA-----LPSDLSGDTFSHVFGTKTSFLENLLLE 354
EK + F GVP + YLEV+Y+ PA LP DLSG TFS VFGT TS LE L+L+
Sbjct: 462 EKMFVFATQGVPRKANYLEVQYN---PAKAMKTLPGDLSGQTFSKVFGTSTSSLEALILD 518
Query: 355 RKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKI 390
RK+KGPSWL+ + E + CK+E+ C ++ I
Sbjct: 519 RKLKGPSWLDVKQPESAHLHNTTCKFEIDCQDLKNI 554
Score = 46.2 bits (108), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
Query: 104 AAFQKLKDLKGQGVKHKYEFT-ADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVED 162
AA +K K +K G + KY+ D+N++EEV+E+EY +RV R+ + +D++G Y ++
Sbjct: 53 AALEKFKAVKS-GQRAKYDLIENDDNLFEEVTEEEYNQRVSDRRSNFVVDENG--DYKDN 109
Query: 163 GREIFD 168
G EIFD
Sbjct: 110 GYEIFD 115
>gi|241747993|ref|XP_002414368.1| DNA polymerase alpha catalytic subunit, putative [Ixodes
scapularis]
gi|215508222|gb|EEC17676.1| DNA polymerase alpha catalytic subunit, putative [Ixodes
scapularis]
Length = 978
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 265/705 (37%), Positives = 374/705 (53%), Gaps = 154/705 (21%)
Query: 191 QNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVI 250
+N + K +SLPL + +KV R F+LDA+ED +K PG V+LFGKV + + ++++SC V
Sbjct: 58 ENADVKVESLPLVENENGEKVVRFFWLDAYEDYFKNPGVVHLFGKVKLLDASTYASCTVT 117
Query: 251 VQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGV 310
V NI RK+YLLPR P ++ K+YAF+ GV
Sbjct: 118 VCNIPRKVYLLPR--------PFAVT------------------------KRYAFDKEGV 145
Query: 311 PDLSEYLEVRY--------------SAKCPAL----------PSDLSGDTFSHVFGTKTS 346
P +EYLE+ Y S P L P+D + H S
Sbjct: 146 PAEAEYLEIVYPVVLSKPGDLVVAKSESAPPLVVMSLSIRTVPNDATNQNEGH---DVQS 202
Query: 347 FLENLLLERKI--KGPSW-------------LEFPEAEKFPSRISWC------KYEVQCN 385
+ N+LL R I K P+W L + + P R+ C K VQC
Sbjct: 203 YDLNVLLHRMITNKIPNWSRLGRLKRGNAAVLVKADKQMTPGRLV-CDLKISSKELVQCK 261
Query: 386 QMEKIRSKQGLIY-----------------LIGIVEFIKFTMLHSSYIIKIMCELNVLPL 428
+ + L++ +++ + TM+ + + +++M ELNVLPL
Sbjct: 262 SYDLTELARTLLHKQRLELGPERLQSMYSSSAQLLKLVDLTMMDAEFCLRLMSELNVLPL 321
Query: 429 AIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK-------------- 474
A+QITN+ GNVLSRTL+GGRS+RNE+LLLHAF +++Y+ PDK + K
Sbjct: 322 ALQITNIAGNVLSRTLLGGRSQRNEYLLLHAFSDRNYICPDKSFKKQAVKVRLREASLLH 381
Query: 475 --------NKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSII 526
+ K RK + PKK +S+ PS
Sbjct: 382 SSIDAIIRHPTTTRRNSRLPKTNPRKVQPTAVVWSWSPKK------------DSMTPSSC 429
Query: 527 QEYNICFT--------------TIPVRMLQDSDITTLCEYLPE---HQVDTGILPSEIKK 569
+ +T T P + +PE + G+LPSEI+K
Sbjct: 430 SWTSTAYTPPSSKSTTSASRPWTCPRVAATRRARAQAEDQIPELPSSSAEPGVLPSEIRK 489
Query: 570 LVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVT 629
LVESRRQVK LMK ++ +DL QYDIRQKALKLTANSMYGCLGF SRFFA+PLAAL+T
Sbjct: 490 LVESRRQVKNLMKAADVGADLYQQYDIRQKALKLTANSMYGCLGFAQSRFFAKPLAALIT 549
Query: 630 AKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
++GREIL+ TK LVE + +VIYGDTDS+MI+ N D V K+GN++K+E NKLYKQLE
Sbjct: 550 SRGREILMQTKELVEKMGLDVIYGDTDSIMINTNSRDLKEVSKLGNKVKAEINKLYKQLE 609
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+DIDG++K MLLLKKKKYAAL +S NG++ S+++KG+DVVRRDWS+LA + G++VI
Sbjct: 610 IDIDGIFKSMLLLKKKKYAALVVSVGPNGQVSTSKQLKGLDVVRRDWSELARKTGEYVID 669
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITK 794
++L +D S +D ++ IH ++ ++ + +PL+ +TK
Sbjct: 670 ELL-----SDNSREDIVEKIHSYLMQLAAKIQGDLLPLSDFCVTK 709
>gi|340369430|ref|XP_003383251.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Amphimedon
queenslandica]
Length = 1359
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 215/402 (53%), Positives = 276/402 (68%), Gaps = 11/402 (2%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ I TM + +++ EL+VLPLA QIT + GN LSRTL+GGRSERNE+LLLHAF
Sbjct: 678 VCHLIAHTMDEALLSLRLTRELSVLPLAYQITRIAGNTLSRTLLGGRSERNEYLLLHAFT 737
Query: 462 EKSYVLPDK--QYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
++ Y+ PDK K+ EE E+ R K++Y GGLVL+PK GFYD+ I+L+DFN
Sbjct: 738 QQGYLPPDKLDSASKHHHGNEEEEESAPASKRGKSSYVGGLVLDPKTGFYDRLILLLDFN 797
Query: 520 SLYPSIIQEYNICFTTIP-VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
SLYPSIIQEYNICFTTI D DI L P V GILPS+I+ LVE RRQVK
Sbjct: 798 SLYPSIIQEYNICFTTIDHAHCNSDEDIGLL--EPPGDSVPQGILPSQIRVLVERRRQVK 855
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
LMK P LS + L QYDIRQKALKLTANSMYGCLGF +SRFFA+PLAA+VT KGR+IL
Sbjct: 856 RLMKDPGLSPETLQQYDIRQKALKLTANSMYGCLGFSHSRFFAKPLAAVVTRKGRQILEQ 915
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
T+ L L +VIYGDTDS+MI D + + ++K+E NKLY+ LE+D+DG++K
Sbjct: 916 TRDLATKLGLDVIYGDTDSIMIDSGTKDLEVAESLAKKVKTEVNKLYRLLEIDVDGIFKC 975
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
MLLLKKKKYAA+SI NGK+I +E+KG+D+VRRDW LA AG +++ +IL
Sbjct: 976 MLLLKKKKYAAVSIHS-QNGKLIEKRELKGLDIVRRDWCDLAKRAGHYILDKIL-----A 1029
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+++D+ ++ I ++++R D+ N V L ITK LTK P
Sbjct: 1030 GHNIDELIEEIQTFLRQLREDVLNSKVDLREFVITKGLTKMP 1071
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 158/275 (57%), Gaps = 22/275 (8%)
Query: 122 EFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIEDVPQKKEKH 181
EF DE++ EE ++ E+ +R+E ++ G+ E F E P +KE
Sbjct: 258 EFEVDESINEEDDKENTVEQAKERRETVPVEAVSVTGWETVKEEEFSS--ETTPNRKE-- 313
Query: 182 DKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKEN 241
+ N SLPL D + R ++LDA+ED+Y+QPG VYLFGK+ ++
Sbjct: 314 ----------DLNIDTSSLPLQEDADGNPFIRFYWLDAYEDLYRQPGVVYLFGKIPIQ-- 361
Query: 242 NSHSSCCVIVQNIDRKIYLLPRSEHLK-----TKEPVSIAQVYSEFDQ-IATQYKILDFK 295
+H SCCV+VQNI+R +Y LPR + L T E VS+ VY EF++ A +++I+ F
Sbjct: 362 GTHVSCCVVVQNIERCLYFLPREKLLSKSGKPTDEDVSMKDVYVEFNESFAEKHRIMKFA 421
Query: 296 SRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLER 355
S+ +++KYAF+LP +P S+YLEVRYSA+ PA P SG ++S VFGT T+ LE L++
Sbjct: 422 SKSVDRKYAFHLPDIPRDSKYLEVRYSARHPAPPPTSSGLSYSCVFGTNTTSLERLIIGC 481
Query: 356 KIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKI 390
+KGP W++ + +SWCK E + + +
Sbjct: 482 GLKGPCWIDVKLPSPSTNSVSWCKIECITDGLTSV 516
Score = 59.7 bits (143), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A +K+K + G++ + E A E+++EEV+E+EY + + RQ D+++ DD G Y E GR
Sbjct: 29 ALEKIKLARQTGIRQEEELEAPESLFEEVTEEEYADLIHTRQRDNFVLDDDGT-YCEHGR 87
Query: 165 EIFDDDIEDVP 175
EIFD+++ P
Sbjct: 88 EIFDEEVTTTP 98
>gi|307207775|gb|EFN85393.1| DNA polymerase alpha catalytic subunit [Harpegnathos saltator]
Length = 1482
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 197/401 (49%), Positives = 271/401 (67%), Gaps = 44/401 (10%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I I T+ + YII ++ +LNV+PLA+QIT + GN+LSRTL+GGR+ERNE+LLLHAFH
Sbjct: 794 ITSLIHATLKEAKYIITMVMDLNVIPLALQITCLAGNILSRTLLGGRAERNEYLLLHAFH 853
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
K YV PDK+ K + N G +K AAY GGLVL+PKKGFYDK ++LMDFNSL
Sbjct: 854 LKEYVTPDKKTEKKRD--------NDGPRKKAAAYIGGLVLDPKKGFYDKLVLLMDFNSL 905
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
YPSIIQEYN+CFTT+P + + ++ P+ ++TG++P+EI KLV+SR+Q+K LM
Sbjct: 906 YPSIIQEYNLCFTTVPGAAYAEVEHLSI----PDSTLETGVIPTEIHKLVKSRQQIKQLM 961
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K PNL+ + M Y IRQ ALKLTANSMYGCLG + RF+A+ LAAL+TAKGREIL +TK
Sbjct: 962 KTPNLTPEQRMDYHIRQMALKLTANSMYGCLGATHCRFYAKGLAALITAKGREILEDTKH 1021
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
LVE L YE++ E N YK++ELDIDGV++Y+LL
Sbjct: 1022 LVEKLQYEIM---------------------------REVNNRYKKVELDIDGVFRYLLL 1054
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
L+KKKYAA++++KL +G++ +QE KG+D+VRRDW LA E GK ++ +L +QS
Sbjct: 1055 LQKKKYAAVTMTKLPSGQLHLAQEHKGLDIVRRDWCPLACETGKKILDILLCDQSS---- 1110
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ RL+ + + ++ + + G P++ ITKQL+K P+
Sbjct: 1111 -ETRLEQVVQILQNVAKSVKEGTAPMSSFVITKQLSKNPDA 1150
Score = 172 bits (436), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 83/185 (44%), Positives = 121/185 (65%), Gaps = 6/185 (3%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
VFR ++LDA+E+ YK PGTVYLFGK +V + + SCCV+V I R+IYLLPR ++LKT
Sbjct: 397 VFRFYYLDAYENPYKNPGTVYLFGKTYVASRDMYCSCCVMVHCIPRRIYLLPR-KYLKTP 455
Query: 271 ---EP--VSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
EP +I VY EFD+ A++ +I++F ++ +K Y+F G P S+YLEVRY+A+
Sbjct: 456 KSGEPQLTTIEDVYKEFDEYASKMRIMEFNCKETKKHYSFEKEGTPKTSDYLEVRYNARY 515
Query: 326 PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 385
PA+ ++ SG VFG+ + LE LL+ERKIKGP WL+ R +WC+ V +
Sbjct: 516 PAIEANYSGPAIERVFGSTVNALELLLIERKIKGPGWLDVKNVSPTAGRFAWCQQIVVTS 575
Query: 386 QMEKI 390
++ +
Sbjct: 576 DIDNV 580
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
DKT + +A +KLK+ + K KYE ENVY+EV EKEY+ VLKRQ DDWI DDGG
Sbjct: 31 DKTGRLSALEKLKEARSG--KRKYEVGELENVYDEVDEKEYSNTVLKRQRDDWIVDDGGS 88
Query: 158 GYVEDGREIFDDDIED 173
GYVEDGREIFDDD+++
Sbjct: 89 GYVEDGREIFDDDLDE 104
>gi|195995451|ref|XP_002107594.1| hypothetical protein TRIADDRAFT_49541 [Trichoplax adhaerens]
gi|190588370|gb|EDV28392.1| hypothetical protein TRIADDRAFT_49541 [Trichoplax adhaerens]
Length = 1203
Score = 384 bits (985), Expect = e-103, Method: Compositional matrix adjust.
Identities = 216/403 (53%), Positives = 291/403 (72%), Gaps = 15/403 (3%)
Query: 407 KFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYV 466
KF + +++ ++I+ ELN LPLA+QITN+ GNVLSRTL+GGRSERNEFLLLHAF EK +V
Sbjct: 505 KFNSMDATFALRIVYELNALPLALQITNIVGNVLSRTLLGGRSERNEFLLLHAFSEKDFV 564
Query: 467 LPDKQYGKNKK---EGEETGEANKGKGR-KKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
PDK + K ++ E E+ +A K R KK AYSGGLVLEPKKGFYDK+I+L+DFNSLY
Sbjct: 565 CPDKSFKKKQQFNEEFEDHDDAAKSNNRRKKPAYSGGLVLEPKKGFYDKYILLLDFNSLY 624
Query: 523 PSIIQEYNICFTTIPVRML---QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
P+IIQE+NIC TT+ L +++D CEY P ++ G+LP +K LVE RR+
Sbjct: 625 PTIIQEFNICLTTVDRHHLAADENNDNELECEY-PSPDLEPGVLPLILKGLVERRREYGH 683
Query: 580 L-MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
L ++ L L++QYDIRQKALKLTANS+YGCLGF NSRF+A+PLAALVT+KGREIL
Sbjct: 684 LYLRLIFLIHRLVLQYDIRQKALKLTANSLYGCLGFSNSRFYAKPLAALVTSKGREILTK 743
Query: 639 TKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
K LVEN + EVIYGDTDS+MI+ N + D + +G+++K+E NK ++ LE+DIDGV+K
Sbjct: 744 AKELVENQMLLEVIYGDTDSIMINTNSTNLDEAYNLGHKVKAEINKSHRLLEIDIDGVFK 803
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
MLLLKKKKYAAL+I K +G + +E+KG+D+VRRDW QLA + G + +SQIL S
Sbjct: 804 SMLLLKKKKYAALAIQKNEDGTLSEVKELKGLDIVRRDWCQLAKDVGNYALSQILSSDSR 863
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
++ + IH ++ ++ D+ +G + + I K L+K+P
Sbjct: 864 -----ENIVDKIHSYLTEVGDDVRSGRIDIDKYVILKTLSKSP 901
Score = 166 bits (420), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 88/180 (48%), Positives = 117/180 (65%), Gaps = 8/180 (4%)
Query: 209 KKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK 268
+K F+ DA+ED Q G +YLFGKV KEN +++SCC+IV+NI+R IY+LPR L
Sbjct: 132 EKYIDFFWFDAYEDPSLQKGIIYLFGKVKTKEN-AYASCCLIVKNIERDIYILPRKTRLD 190
Query: 269 TKEP-----VSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSA 323
T V++ VY EF +I + KI+ F+SR +K+YAF L VP SEYL V+YSA
Sbjct: 191 TDGSDSGIEVTMKDVYEEFSEICNKNKIMTFRSRVTKKRYAFELKDVPVESEYLHVKYSA 250
Query: 324 KCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEV 382
P + SD+ G TFSHVFGT TS LE+ LL KI GP+WL +FPS ++S+C+ E
Sbjct: 251 ALPQIKSDMQGQTFSHVFGTNTSSLESFLLHNKIMGPNWLRI-RNPQFPSQKVSYCRSET 309
>gi|328774387|gb|EGF84424.1| hypothetical protein BATDEDRAFT_85131 [Batrachochytrium dendrobatidis
JAM81]
Length = 2388
Score = 383 bits (984), Expect = e-103, Method: Compositional matrix adjust.
Identities = 198/407 (48%), Positives = 271/407 (66%), Gaps = 16/407 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++E ++ + ++M +L VLPL Q+TN+ GN+ SR+L G R+ERNE+LLLH FH
Sbjct: 1720 LMEMVQHCEFDTFLTCQLMFKLQVLPLTKQLTNLAGNIWSRSLTGARAERNEYLLLHEFH 1779
Query: 462 EKSYVLPDKQYGK-------NKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
++ Y+ PDK Y ++ + E TG K GR+KAAY+GGLVLEPKKGFYDK+++
Sbjct: 1780 DRKYITPDKVYSNRVVSNQLDENDAEGTGAVTKKGGRRKAAYAGGLVLEPKKGFYDKYVL 1839
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESR 574
++DFNSLYPSIIQEYNICFTTI + D P VD GILP + LV R
Sbjct: 1840 MLDFNSLYPSIIQEYNICFTTIARSYDNNGD---HMPTPPNSSVDRGILPKLLGTLVNRR 1896
Query: 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
+ VK LMK P + L QYDIRQKALKLTANSMYGCLGF N RF+A+PLA L+T+KGRE
Sbjct: 1897 QLVKGLMKDPKNTPAELAQYDIRQKALKLTANSMYGCLGFVNFRFYAEPLAMLITSKGRE 1956
Query: 635 ILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDG 694
IL NT L E N +VIYGDTDS+MI N D V +IG ++K NK Y LE+++DG
Sbjct: 1957 ILQNTVDLAEKSNLDVIYGDTDSIMIYTNSTDLAEVKRIGQELKRAVNKRYNLLEIELDG 2016
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
++ MLLLKKKKYAA+ + + +G++ + E KG+D+VRRDW ++ +A +V+ QI
Sbjct: 2017 FFERMLLLKKKKYAAILVEE-KDGQLKRTIETKGLDLVRRDWCGISFDASNYVLQQI--- 2072
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
++ + ++ ++ IH+++ K+ ++ +G VPL I K LTK PE
Sbjct: 2073 --FSGETREEAVEQIHQYLNKLGVEVRSGTVPLEKFIINKGLTKNPE 2117
Score = 162 bits (411), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 113/185 (61%), Gaps = 9/185 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
+M++ D++E + G VYLFGKV+ H SCC++V+NI R +++LPR L
Sbjct: 1318 LKMYWFDSYE----KHGIVYLFGKVYQPLTQRHVSCCLVVKNIQRNLFVLPRPIKLDDLG 1373
Query: 268 -KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP 326
T V++A VY EFD I +++I +F SR + +KYAF LP +P S+YL+V Y P
Sbjct: 1374 IPTDTAVTMADVYQEFDTIRQKHQISEFSSRSVSRKYAFELPNIPSESDYLKVLYPFSEP 1433
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQ 386
LPSD+SG TFS VFGT+T +E L+L+RK+ GP W+ + +SWCK E +
Sbjct: 1434 ELPSDISGKTFSRVFGTRTRAMELLILKRKLMGPCWISIKNVKVSTPMVSWCKLEFIADD 1493
Query: 387 MEKIR 391
+ IR
Sbjct: 1494 PKSIR 1498
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 98 DKTNKFAAFQKLKDLK--GQGVKHKYEFTADENVYEEVSEKEY-TERVLKRQEDDWIDDD 154
D +K Q+LK+L+ G YE ++++ V+E+EY T R EDD++ DD
Sbjct: 934 DAYSKRQTLQRLKELRESGNTSLRDYEVAGTADIFDVVTEEEYNTLSKRTRLEDDFVVDD 993
Query: 155 GGDGYVEDGREIFDD 169
G+GY G E +D+
Sbjct: 994 NGEGYANGGLEDWDN 1008
>gi|324500375|gb|ADY40178.1| DNA polymerase alpha catalytic subunit [Ascaris suum]
Length = 1617
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/394 (53%), Positives = 275/394 (69%), Gaps = 21/394 (5%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+ I+ ELN LPL +QIT G VLSRTLMGGR+ERNEFLLLHAF + YV P+K ++K
Sbjct: 918 LAIIAELNALPLFVQITQTVGGVLSRTLMGGRAERNEFLLLHAFQKAGYVPPNKHQYEHK 977
Query: 477 KEGEETGEANKG---------KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527
K+ + T +A K KKA Y+GGLVLEPKKG YDK+++L+DFNSLYPSIIQ
Sbjct: 978 KKTQSTEKAIAEDEQEEHVDEKSSKKAQYTGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQ 1037
Query: 528 EYNICFTTIPVRMLQD-SDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
EYNICFTT+ +D S++ L P++Q + GILP EI+ LVE RR VK LM L
Sbjct: 1038 EYNICFTTVDQSKRKDESEVPEL----PDNQ-NEGILPREIRVLVERRRDVKNLMSSEKL 1092
Query: 587 SSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL 646
S QY+IRQ ALKLTANSMYGCLGF +SRF+A+PLAAL+T++GREIL++TK LVE
Sbjct: 1093 SDHQRQQYNIRQMALKLTANSMYGCLGFTHSRFYAKPLAALITSRGREILMHTKDLVEKQ 1152
Query: 647 NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
Y VIYGDTDS+MI+ + D + V K+G ++K NK +K+LELDIDGVYK +LLLKKKK
Sbjct: 1153 GYAVIYGDTDSIMINTGLEDLEQVKKLGLELKRMVNKCHKRLELDIDGVYKRLLLLKKKK 1212
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 766
YA L++ + K+ +E+KG+D+VRRDWS LA + G V+ IL D+ +
Sbjct: 1213 YAGLAVDLNDSSKV--KREMKGLDIVRRDWSVLAKDIGNEVVDMILS----LSLGRDELV 1266
Query: 767 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+ IH+ ++ +R +LD G + ++ EI KQLT+ P
Sbjct: 1267 ERIHDRLRALRKELDEGLIDISKYEILKQLTRDP 1300
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 23/239 (9%)
Query: 205 DHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHS-SCCVIVQNIDRKIYLLPR 263
D + + + R ++LDAFED K PGTVYLFG+V NNS S SCCVIV+NI R+++ LPR
Sbjct: 502 DDDGRSIVRFYWLDAFEDPIKFPGTVYLFGRVI---NNSISESCCVIVRNIWRQVFFLPR 558
Query: 264 SEH----LKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEV 319
+ + E V +V +E + Q + K R ++ +AFN +P +E LEV
Sbjct: 559 ETRFLNGIDSGEKVDFLEVNNEVQSLLKQIGVSIVKCRPTKRNFAFNDGIIPKNAEVLEV 618
Query: 320 RYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCK 379
+YS+ P L +++ GDTFSHVF T + +E LLLE ++GPSW+E + + S+ K
Sbjct: 619 QYSSTFPKLSAEMKGDTFSHVFNTTATAMERLLLEVDMRGPSWMEITDYVVSSPQQSYAK 678
Query: 380 YEVQCNQMEKIRS----KQGLIYLIGIVEFIKFTMLHS----------SYIIKIMCELN 424
+E + ME+++S + G + I FT S S+I+ C LN
Sbjct: 679 HEFIVD-MERMKSLRVVECGDPMPTVTLMAINFTATMSDKKENEITMISFIVDSKCSLN 736
Score = 55.5 bits (132), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEF-TADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDG 163
A ++++ + G+ H+ + + VYEEV E EY V +RQ DD++ DD G GYV+ G
Sbjct: 159 ALEEVRRARATGLVHRVDVDNLIKPVYEEVDEDEYINIVRERQNDDFVVDDDGSGYVDHG 218
Query: 164 REIFDDDIE 172
+IFDD+ E
Sbjct: 219 VDIFDDEDE 227
>gi|380019792|ref|XP_003693786.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Apis florea]
Length = 1331
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/422 (48%), Positives = 271/422 (64%), Gaps = 62/422 (14%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I IK T+ + YI+ I+ +LN+LPLA+QIT + N
Sbjct: 652 IDNLIKITLTEALYILSIVFDLNILPLALQITCIAENT---------------------- 689
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
+KKAAY+GGLVLEPKKGFYDK I+LMDFNSL
Sbjct: 690 ----------------------------TKKKAAYTGGLVLEPKKGFYDKLILLMDFNSL 721
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
YPSIIQEYN+CFTT+P D ++ PE +++G++P+EI+KLVESR +VK LM
Sbjct: 722 YPSIIQEYNLCFTTVPGAAYADYGNLSI----PESNLESGVIPTEIRKLVESRGEVKKLM 777
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K N+S +L MQY+IRQ ALKLTANSMYGCLG + RF+A+ LAA+VTAKGREIL +TKS
Sbjct: 778 KATNISPELKMQYNIRQLALKLTANSMYGCLGATHCRFYAKGLAAMVTAKGREILQHTKS 837
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
LVE LNYEVIYGDTDS+MI+ N+ DY+ VF +G +IK E NKLYK++ELDIDGV++Y+LL
Sbjct: 838 LVEKLNYEVIYGDTDSIMINTNLLDYEEVFSVGKKIKQEVNKLYKRVELDIDGVFRYLLL 897
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
L+KKKYAA+ ++KL NG++ +QE KG+D+VRRDW QLA + GK ++ +L Q
Sbjct: 898 LQKKKYAAVIMTKLPNGQIELTQEHKGLDIVRRDWCQLACDTGKKILDHLLSNQ-----P 952
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE---GGKVCITQIRLSRNRRG 818
+DR++ I + + ++ V L+ L ITKQL+K P K Q+ L N+ G
Sbjct: 953 CEDRVEQIFMILHDVAQNVRENQVSLSSLVITKQLSKNPNEYPDTKQAHVQVALRLNKEG 1012
Query: 819 RR 820
R
Sbjct: 1013 GR 1014
Score = 189 bits (480), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 97/201 (48%), Positives = 128/201 (63%), Gaps = 13/201 (6%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL T+ ++VFR ++ DA+ED YKQPG VYL GKVF+ + SCC+ ++NI R+IY
Sbjct: 240 LPLLTNANKEEVFRFYWWDAYEDPYKQPGVVYLLGKVFIPSLKEYCSCCLTIKNIPRRIY 299
Query: 260 LLPRSEHLKT--------KEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP 311
LLPR ++KT ++ +I VY EF+Q A + I +F+S K+ K YAF G P
Sbjct: 300 LLPRV-YIKTSFKDNNEEEQLNTIEDVYKEFNQFANKLGIKEFRSSKVSKHYAFEQEGTP 358
Query: 312 DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
+S+YLEVRY+A P +PSD SG + VFGT + LE LL+ER IKGP WLE
Sbjct: 359 AISDYLEVRYAAHYPPVPSDYSGPSIERVFGTTVNALELLLIERNIKGPCWLEI--KCPL 416
Query: 372 PSRI--SWCKYEVQCNQMEKI 390
PS I SWCK +V C +ME I
Sbjct: 417 PSNIQTSWCKIKVNCMKMENI 437
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 69/107 (64%), Gaps = 13/107 (12%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDKT + +A +KLK LKG K+KYE ENVYEEV EKEYT+ V++RQ DDWI DDG
Sbjct: 14 IDKTGRLSALEKLKQLKGS--KNKYEIDKLENVYEEVDEKEYTKTVIERQSDDWIIDDGE 71
Query: 157 DGYVEDGREIFDDDIED-----------VPQKKEKHDKRKKNKNIQN 192
GY+EDGREIFDDD++D KK K D K NIQN
Sbjct: 72 SGYIEDGREIFDDDLDDESIQEARKHKITGPKKNKKDNIKMKGNIQN 118
>gi|195569123|ref|XP_002102561.1| GD19968 [Drosophila simulans]
gi|194198488|gb|EDX12064.1| GD19968 [Drosophila simulans]
Length = 847
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 199/344 (57%), Positives = 255/344 (74%), Gaps = 19/344 (5%)
Query: 489 KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQDSD- 545
+ +KKAAY+GGLVLEP +G Y+K+++LMDFNSLYPSIIQEYNICFTT+ PV D+D
Sbjct: 211 QTKKKAAYAGGLVLEPMRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQPV----DADE 266
Query: 546 ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 605
+ TL P+ + + GILP ++K+LVESR++VK LM P+LS +L MQY IRQ ALKLTA
Sbjct: 267 LPTL----PDSKTEPGILPLQLKRLVESRKEVKKLMAAPDLSPELQMQYHIRQMALKLTA 322
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN 665
NSMYGCLGF +SRFFAQ LAALVT KGREIL NT+ LV+ LNY+V+YGDTDSLMI+ N+
Sbjct: 323 NSMYGCLGFAHSRFFAQHLAALVTHKGREILTNTQQLVQKLNYDVVYGDTDSLMINTNIT 382
Query: 666 DYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQE 725
DYD V+KIG+ IK NKLYKQLELDIDGV+ +LLLKKKKYAA+ +SK S G + QE
Sbjct: 383 DYDQVYKIGHNIKQSVNKLYKQLELDIDGVFGCLLLLKKKKYAAVKLSKDSKGNLRREQE 442
Query: 726 IKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFV 785
KG+D+VRRDWSQLA GK V+ ++L E+ L+++L +H ++KI+T + G V
Sbjct: 443 HKGLDIVRRDWSQLAVMVGKAVLDEVLSEK-----PLEEKLDAVHAQLEKIKTQIAEGVV 497
Query: 786 PLTLLEITKQLTKAPE--GGKVCITQIRLSRNRRGRRRRRRKKK 827
PL L ITKQLT+ P+ + ++++ R R R RR KK
Sbjct: 498 PLPLFVITKQLTRTPQEYANSASLPHVQVAL-RMNRERNRRYKK 540
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 62/100 (62%), Gaps = 4/100 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DK +FAA ++L+ LKG K K E D+ + V E+EY +R ++ DDWI++DG
Sbjct: 15 VDKNGRFAAMERLRQLKGTKNKCKVEDQVDDVY-DVVDEREYAKRAQEKYGDDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
GY ED R+ F+D+ E ++++ D +KK K + PN+K
Sbjct: 74 -GYAEDLRDFFEDEDEYSDGEEDRKDSKKK-KGVA-PNSK 110
>gi|256089821|ref|XP_002580953.1| DNA polymerase alpha catalytic subunit [Schistosoma mansoni]
Length = 1017
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/425 (48%), Positives = 276/425 (64%), Gaps = 39/425 (9%)
Query: 404 EFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEK 463
+ I F + + ++++ +L VLPLA+QIT++CGNVLSRTL GGR+ERNE LLLHAF +
Sbjct: 254 QLIDFCLSDAHLVLRLCHQLQVLPLAMQITSICGNVLSRTLSGGRAERNEALLLHAFTQH 313
Query: 464 SYVLPDKQYGKNKKEG---------EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
Y++PD +E + G GR+K AY+GGLVLEPKKGFYDK+I+
Sbjct: 314 GYIVPDPPVSHRGPHSNRHDEWDGIQEQAVEDAGTGRRKPAYTGGLVLEPKKGFYDKYIL 373
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPE-HQVDTGILPSEIKKLVES 573
L+DFNSLYPSIIQE+NICFTT+ D D+ E + G+LP+EI++LVES
Sbjct: 374 LLDFNSLYPSIIQEFNICFTTV------DRDLVATTSSDKEVFDQEPGLLPAEIRRLVES 427
Query: 574 RRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
R++VK L+ + S D Q++ RQ ALKLTANS+YGCLGF SRF A+ LAALVT
Sbjct: 428 RKEVKKLLANTS-SGDAAQRAQWNTRQAALKLTANSVYGCLGFAASRFCARGLAALVTGL 486
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GR +L+NT+ LVEN+N EVIYGDTDS+M++ N D + IG +I+ E NK Y+ LELD
Sbjct: 487 GRAVLMNTRDLVENMNMEVIYGDTDSIMVNTNTTDLLAALAIGEKIRQEVNKHYRLLELD 546
Query: 692 IDGVYKYMLLLKKKKYAALSI---------SKLS-----NGKMICS-QEIKGVDVVRRDW 736
DGVY MLLL KKKYAALS+ +K+S +++C+ QE+KG+D+VRRDW
Sbjct: 547 TDGVYAAMLLLAKKKYAALSVINPVQWATAAKISINQGLTPQVVCTKQEMKGLDIVRRDW 606
Query: 737 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
S LA G+ ++ +L + D LD ++ E +K+R G +P++ ITK L
Sbjct: 607 SALAISVGRRCVAALLSGEP-KDIILDRIHADLTETAEKVR----QGKLPISEFIITKML 661
Query: 797 TKAPE 801
TK PE
Sbjct: 662 TKNPE 666
>gi|350645837|emb|CCD59476.1| DNA polymerase alpha catalytic subunit,putative [Schistosoma mansoni]
Length = 1644
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/457 (45%), Positives = 284/457 (62%), Gaps = 68/457 (14%)
Query: 404 EFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEK 463
+ I F + + ++++ +L VLPLA+QIT++CGNVLSRTL GGR+ERNE LLLHAF +
Sbjct: 839 QLIDFCLSDAHLVLRLCHQLQVLPLAMQITSICGNVLSRTLSGGRAERNEALLLHAFTQH 898
Query: 464 SYVLPDKQYGKNKKEG---------EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
Y++PD +E + G GR+K AY+GGLVLEPKKGFYDK+I+
Sbjct: 899 GYIVPDPPVSHRGPHSNRHDEWDGIQEQAVEDAGTGRRKPAYTGGLVLEPKKGFYDKYIL 958
Query: 515 LMDFNSLYPSIIQEYNICFTTI-------------PVRMLQDSDITTLCEY--------- 552
L+DFNSLYPSIIQE+NICFTT+ P+ + D+ +TTL
Sbjct: 959 LLDFNSLYPSIIQEFNICFTTVDRDLVATTSSDKEPLDL--DTIVTTLIATVHGDSNSIS 1016
Query: 553 -----------LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQK 599
LP Q + G+LP+EI++LVESR++VK L+ + S D Q++ RQ
Sbjct: 1017 VSKSDNDKKIRLPVDQ-EPGLLPAEIRRLVESRKEVKKLLANTS-SGDAAQRAQWNTRQA 1074
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
ALKLTANS+YGCLGF SRF A+ LAALVT GR +L+NT+ LVEN+N EVIYGDTDS+M
Sbjct: 1075 ALKLTANSVYGCLGFAASRFCARGLAALVTGLGRAVLMNTRDLVENMNMEVIYGDTDSIM 1134
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSI------- 712
++ N D + IG +I+ E NK Y+ LELD DGVY MLLL KKKYAALS+
Sbjct: 1135 VNTNTTDLLAALAIGEKIRQEVNKHYRLLELDTDGVYAAMLLLAKKKYAALSVINPVQWA 1194
Query: 713 --SKLS-----NGKMICS-QEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
+K+S +++C+ QE+KG+D+VRRDWS LA G+ ++ +L + D LD
Sbjct: 1195 TAAKISINQGLTPQVVCTKQEMKGLDIVRRDWSALAISVGRRCVAALLSGEP-KDIILDR 1253
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
++ E +K+R G +P++ ITK LTK PE
Sbjct: 1254 IHADLTETAEKVR----QGKLPISEFIITKMLTKNPE 1286
Score = 160 bits (405), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 128/187 (68%), Gaps = 5/187 (2%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVF-VKENNSHSSCCVIVQNIDRK 257
S P +++ N + ++ DA ED + PG VYLFGK++ ++ +++SCC+ +++++R+
Sbjct: 326 SFPPSSNKGN--ILYFYWFDAHEDFKQLPGIVYLFGKLYDHSKSGTYASCCLRIKDLERR 383
Query: 258 IYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYL 317
I+LLPR+ + + ++ VY EF + +QYKI F+ + EK+YAF VP+ S+YL
Sbjct: 384 IFLLPRTSSPENGDIPTVKDVYMEFRDLTSQYKIGKFRCKTTEKRYAFEYADVPETSDYL 443
Query: 318 EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISW 377
EVRY+A ALP+DL G TFSH+FGT TSFLENLLL+ +++GP WLE +A + +ISW
Sbjct: 444 EVRYAASYSALPADLQGKTFSHIFGTNTSFLENLLLDLQLRGPCWLEIKDASQVQPQISW 503
Query: 378 CK--YEV 382
C+ YEV
Sbjct: 504 CQIDYEV 510
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 126 DENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIEDVPQKKEKHDKRK 185
++ VYE V E EY E V KR EDDWI DD G Y EDGREIFDD+ ED +E +D +
Sbjct: 11 EQPVYETVDEAEYAELVRKRLEDDWIVDDEGGDYAEDGREIFDDNDED----EESYDSKP 66
Query: 186 KNKN 189
K K+
Sbjct: 67 KAKS 70
>gi|345494591|ref|XP_001604814.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Nasonia
vitripennis]
Length = 1738
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 198/404 (49%), Positives = 276/404 (68%), Gaps = 22/404 (5%)
Query: 399 LIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLH 458
L + +K TM SYI ++ EL++L LA+QIT + GN LSRTL G ERNEFLLLH
Sbjct: 1044 LYNMTLLVKSTMTKVSYIFEVSAELSILSLAVQITRIVGNTLSRTLSCGVGERNEFLLLH 1103
Query: 459 AFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
AF K+Y+ PDK +K+ + G+KK++Y+GG++LEPK GFYD ++L+DF
Sbjct: 1104 AFQSKNYLTPDK-----RKDNSDYD------GKKKSSYTGGMILEPKAGFYDTSVLLLDF 1152
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQE+NICFTTIP + + LC E + GILP+ I LV+SR Q+K
Sbjct: 1153 NSLYPSIIQEFNICFTTIP--GAAHASVDELCRV--ESCAEQGILPTIISGLVQSRLQIK 1208
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
++ PNLSSDL QY+ RQ ALKLTANSMYGCLG SRF+A+ LAALV +GREI
Sbjct: 1209 KMINSPNLSSDLRRQYNSRQLALKLTANSMYGCLGASYSRFYAKGLAALVAMRGREIFKK 1268
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
T+ L+++ NYEVIYGDTDS MI+ + DY+ V +G +K E NKL+K++++DID V+K
Sbjct: 1269 TQDLIQSHNYEVIYGDTDSFMINVKLTDYEQVMAVGRMLKKEVNKLFKKIKIDIDRVFKC 1328
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL-DEQSY 757
+LL+KKK+YA L I++ SN ++ +EIKG++++RRD LAS+ G V+ ++L D+ S+
Sbjct: 1329 LLLMKKKQYAGLIITRQSNDELEYKKEIKGLEIIRRDCCALASDTGHKVLEELLKDQPSH 1388
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
R +NI E ++ +L G +P++ LEITK+L+K P+
Sbjct: 1389 I------RSKNIFEILETTNRELREGKLPMSSLEITKKLSKDPD 1426
Score = 163 bits (413), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 116/192 (60%), Gaps = 3/192 (1%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LP T+ +K+FR F+LDA+ED Y PG V+LFGK+ N + S CV V+NI R++Y
Sbjct: 642 LPTTTNSYGQKIFRFFWLDAYEDSYTDPGVVFLFGKILEPTANQYISSCVTVKNIPRRMY 701
Query: 260 LLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEV 319
+LPR + + E + + Y E ++ Q I +FK +K+ K YAF VP + YLEV
Sbjct: 702 VLPRKD--EAGEQSAFDKAYVELNEYLRQKCINEFKCKKVTKIYAFEKKDVPQNTAYLEV 759
Query: 320 RYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRI-SWC 378
RYS+ PAL SD SG +FGT + +E L+E+ IKGP W++ + S + SWC
Sbjct: 760 RYSSVYPALDSDYSGPAIQAIFGTNVTAMELFLIEKNIKGPCWMDVKISPFASSNLSSWC 819
Query: 379 KYEVQCNQMEKI 390
K+E+ C +ME I
Sbjct: 820 KFEINCTRMEDI 831
>gi|308497768|ref|XP_003111071.1| hypothetical protein CRE_04677 [Caenorhabditis remanei]
gi|308242951|gb|EFO86903.1| hypothetical protein CRE_04677 [Caenorhabditis remanei]
Length = 1489
Score = 371 bits (953), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 209/408 (51%), Positives = 282/408 (69%), Gaps = 21/408 (5%)
Query: 399 LIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLH 458
LI ++ + +L S I+++ LN LPL +QI+ + G + SRT+MGGR+ERNE+LLLH
Sbjct: 762 LISLINWSWHDLLLS---IRLVNHLNALPLYLQISQIVGGITSRTMMGGRAERNEYLLLH 818
Query: 459 AFHEKSYVLPDKQYG-----KNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
AF + + PDK K ++E E+ E + K KA YSGGLVLEPKKG Y+ I
Sbjct: 819 AFEKADLIAPDKYNSFDAKKKKEQESEDNAEVTEEKKSGKAQYSGGLVLEPKKGLYETLI 878
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
+L+DFNSLYPSIIQEYNIC+TT+ D ++ +P++ G+LP EI+KLVE
Sbjct: 879 LLLDFNSLYPSIIQEYNICYTTLEYAKDSDEQLS-----VPQNTDIEGVLPREIRKLVEC 933
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RR VK LMK + Q DIRQ ALKLTANSMYGCLGF SRF+A+PLAALVTAKGR
Sbjct: 934 RRNVKGLMKTERNEAKR-KQLDIRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGR 992
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL+++K LVE + Y V+YGDTDS+MI+ N D + K+G++IK NK ++ LELD+D
Sbjct: 993 EILMHSKDLVEKMGYSVVYGDTDSIMINTNSVDLGAAKKLGSEIKKAVNKCHRLLELDLD 1052
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
GV+K MLLLKKKKYAAL+I+ + ++E+KG+D+VRRDWSQLA E G V+ +ILD
Sbjct: 1053 GVFKRMLLLKKKKYAALTINP---DTRVEAKELKGLDIVRRDWSQLAKETGTAVVDKILD 1109
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
T + D+ + +I + +K+IR LD+G +PL + +I+KQLT+ PE
Sbjct: 1110 ----TSLTRDEMISSIDDLLKEIRQKLDSGTIPLEMFQISKQLTRNPE 1153
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/196 (38%), Positives = 120/196 (61%), Gaps = 8/196 (4%)
Query: 202 LATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLL 261
++ + E+ K RM+++DA+ED++K GTVYLFG+V S SC ++V+NI RK+Y +
Sbjct: 344 MSGESEDTKAIRMYWIDAYEDVHKANGTVYLFGRVKASAT-SWESCSIVVKNICRKVYFM 402
Query: 262 PRSEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKY----AFNLPGVPDLSEY 316
PRS +L+T E ++A+++ E D + ++ +FK + +EK+ +F G +
Sbjct: 403 PRSHNLRTGEESNLAELHKEIGDVLKNKFNTHEFKCKMVEKELIRDESFGNGGGTK-TPL 461
Query: 317 LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRIS 376
+EV Y A LPSDL G+TFSH F T + LE LL+E+K GP W+E K + +
Sbjct: 462 MEVLYPADKGKLPSDLRGNTFSHTFNTSVTPLERLLIEKKFMGPGWIELYNYAKPKAPTT 521
Query: 377 WCKYEVQCNQMEKIRS 392
CK+E + + MEK+R+
Sbjct: 522 NCKHEFEVD-MEKMRN 536
Score = 48.5 bits (114), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDG 158
KT + +A ++LK + G +K + E+VY+ V + EY + V KRQ D+++ DD G G
Sbjct: 25 KTKELSAMEQLKQARASGRAYKPDIEV-EDVYDTVDDDEYEQIVSKRQNDNFVVDDDGMG 83
Query: 159 YVEDG 163
YV+ G
Sbjct: 84 YVDTG 88
>gi|268572495|ref|XP_002641336.1| Hypothetical protein CBG13184 [Caenorhabditis briggsae]
Length = 1461
Score = 370 bits (949), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 209/402 (51%), Positives = 280/402 (69%), Gaps = 15/402 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ I ++ S ++I+ LN LPL +QI+ + G + SRT+MGGR+ERNE+LLLHAF
Sbjct: 740 LISLINWSWHDSLLSVRIVVRLNALPLYMQISQIVGGITSRTMMGGRAERNEYLLLHAFE 799
Query: 462 EKSYVLPDKQYG-KNKKEGEE-TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ + PDK +NKK+ E+ E K KA YSGGLVLEPKKG Y+ I+L+DFN
Sbjct: 800 KADLIAPDKYSAFENKKQKEQQVKEEGDEKKAGKAQYSGGLVLEPKKGLYETLILLLDFN 859
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQEYNIC+TT+ D ++ +P++ G+LP EI+KLVE RR VKA
Sbjct: 860 SLYPSIIQEYNICYTTLVYSKDSDEQLS-----VPQNTDVEGVLPREIRKLVECRRDVKA 914
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK S Q DIRQ ALKLTANSMYGCLGF SRF+A+PLAALVTAKGREIL+++
Sbjct: 915 LMKTERNESKR-KQMDIRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHS 973
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K LVE + Y V+YGDTDS+MI+ N D K+G++IK NK ++ LELD+DGV+K M
Sbjct: 974 KDLVEKMGYSVVYGDTDSIMINTNSMDLAMAKKLGSEIKKAVNKCHRLLELDLDGVFKRM 1033
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LLLKKKKYAAL+I+ + + ++E+KG+D+VRRDWSQLA E G V+ +ILD +
Sbjct: 1034 LLLKKKKYAALTINPDTK---VEAKELKGLDIVRRDWSQLAKEIGTAVVDKILD----SS 1086
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S D+ + +I + ++ IR LD+G VP+ + +I+KQLTK P+
Sbjct: 1087 LSRDEMISSIDDLLRDIRQKLDSGTVPIEMFQISKQLTKNPD 1128
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 132/227 (58%), Gaps = 9/227 (3%)
Query: 171 IEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTV 230
IEDV E ++ + K ++ + + D E+ K RM+++DA+ED++K GTV
Sbjct: 303 IEDVWTGNEDQEEEEDGK-VEVKTGTEPFYVMTGDREDVKAIRMYWIDAYEDVHKANGTV 361
Query: 231 YLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIA-TQY 289
YLFGKV N + +C ++V+NI RK+Y +PRSE+L+T E ++A ++ E ++ ++
Sbjct: 362 YLFGKVKTGAN-TWETCSIVVKNICRKVYFMPRSENLRTGEESNLADLHKEIGEVLKNKF 420
Query: 290 KILDFKSRKIEKKY----AFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKT 345
+FK + +EK+ +F G + +EV Y A LP+DL GDTFSH F T
Sbjct: 421 NTHEFKCKMVEKELIRDESFGNGGGTK-TPLMEVLYPADKGKLPNDLKGDTFSHTFNTSV 479
Query: 346 SFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRS 392
S LE LL+E+K GP W++ ++ S CKYE + + MEK+R+
Sbjct: 480 SPLERLLIEKKFMGPGWIDLYSYVDPKAKTSNCKYEFEVD-MEKMRN 525
>gi|167519929|ref|XP_001744304.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777390|gb|EDQ91007.1| predicted protein [Monosiga brevicollis MX1]
Length = 1089
Score = 368 bits (945), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 214/473 (45%), Positives = 298/473 (63%), Gaps = 39/473 (8%)
Query: 344 KTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIV 403
+ S+ L + + K P P S++S + +Q +I + Q L+ L+ V
Sbjct: 388 QVSYDLTALTQSQTKAP-----PAISPASSKLSQTMFMLQ-----QISNTQSLLKLVDHV 437
Query: 404 EFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEK 463
E + I+ +M +LNVLPL QITN+ G ++SRTL GRS+RNEFLL H FH +
Sbjct: 438 ERDAY------LILSLMFKLNVLPLMKQITNITGGLMSRTLSRGRSDRNEFLLCHEFHRR 491
Query: 464 SYVLPDK------QYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
Y++PDK Q KN K+G++ R+K AYSGGLVLEPKKGFYDK I+L+D
Sbjct: 492 KYIVPDKPTWAEKQAIKNSKQGKKADNLADEPVRRKPAYSGGLVLEPKKGFYDKLILLLD 551
Query: 518 FNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
FNSLYPSIIQEYN+CFTT+ P ++ I +P+ + G+LP ++ L+
Sbjct: 552 FNSLYPSIIQEYNLCFTTVGRNDGQPKSSEEEDAIAE----VPDSALPRGVLPHLLRTLI 607
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
RRQVKAL+K +S L +YDIRQKALKLTANSMYGCLGF SRF+A+ +AALVT+K
Sbjct: 608 AKRRQVKALIKSEADASK-LAEYDIRQKALKLTANSMYGCLGFTGSRFYAKAIAALVTSK 666
Query: 632 GREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
GREIL T L ++ L EVIYGDTDS+M++ DY + NQ+K E N LY +LE+
Sbjct: 667 GREILQKTVDLTQDKLGLEVIYGDTDSIMVNSRCTDYSEAVTLANQVKKEVNSLYSELEI 726
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
D+DG+YK M LL KKK A + +S GK+ ++E+KG+D+VRRDWS LA++AG ++++Q
Sbjct: 727 DLDGIYKTM-LLLKKKKYAALMMDMSKGKVTLTKEVKGLDIVRRDWSALAADAGNWILNQ 785
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDL-DNGFVPLTLLEITKQLTKAPEG 802
+L+++ + SL ++ HEH++++ D+ VPL I K LTK P
Sbjct: 786 VLNQEQDSTESL---VETCHEHLRQVSEDVRTENKVPLEKFIIFKSLTKDPSA 835
Score = 168 bits (425), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/189 (44%), Positives = 121/189 (64%), Gaps = 8/189 (4%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQ--PGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 257
LPL T ++V M++LDAFE + + G++YLFGKV+ E+ ++ SCC+ V N++R
Sbjct: 8 LPLDTLESGEEVLHMYWLDAFE-VSRNCGDGSIYLFGKVYHPESETYISCCLTVANLERN 66
Query: 258 IYLLPRS-----EHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
I+++PR E ++T E VS+A VY E QI ++YKI F S+ +++KYAF+ VP+
Sbjct: 67 IFVVPRRLRLDREGVETNEAVSMADVYEEMGQIMSRYKINPFLSKPVKRKYAFDKTDVPE 126
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
+ L+++YS PALP DLSG TFSHVFGT S LE L++R + GP WL +
Sbjct: 127 EVDVLKIKYSGTLPALPGDLSGQTFSHVFGTNISPLERFLMKRDLMGPCWLRIKNVKGAT 186
Query: 373 SRISWCKYE 381
ISWCK E
Sbjct: 187 KNISWCKLE 195
>gi|341878909|gb|EGT34844.1| hypothetical protein CAEBREN_29139 [Caenorhabditis brenneri]
Length = 1534
Score = 366 bits (939), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 210/408 (51%), Positives = 279/408 (68%), Gaps = 21/408 (5%)
Query: 399 LIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLH 458
LI ++ + +L S ++I+ LN LPL IQI+ + G + SRT+MGGR+ERNE+LLLH
Sbjct: 807 LISLINWSWNDLLLS---LQIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLH 863
Query: 459 AFHEKSYVLPDKQYGKNKKEGEETGEANKGKG-----RKKAAYSGGLVLEPKKGFYDKFI 513
AF + + PDK K+ +E GE N G KA YSGGLVLEPKKG Y+ I
Sbjct: 864 AFEKADLIAPDKYNAFENKKKKEQGEDNAEGGGDEKKNGKAQYSGGLVLEPKKGLYETLI 923
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
+L+DFNSLYPSIIQEYNIC+TT+ D ++ +P++ G+LP EI+KLVE
Sbjct: 924 LLLDFNSLYPSIIQEYNICYTTLEYSKDSDEQLS-----VPQNTDIEGVLPREIRKLVEC 978
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RR VK LMK + Q DIRQ ALKLTANSMYGCLGF SRF+A+PLAALVTAKGR
Sbjct: 979 RRNVKTLMKTERNDAKR-KQMDIRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGR 1037
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL+++K LVE + Y V+YGDTDS+MI+ N D + K+G++IK NK ++ LELD+D
Sbjct: 1038 EILMHSKDLVEKMGYSVVYGDTDSIMINTNSMDLVAAKKLGSEIKKAVNKCHRLLELDLD 1097
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
GV+K MLLLKKKKYAAL+I+ + + ++E+KG+D+VRRDWSQLA E G V+ +ILD
Sbjct: 1098 GVFKRMLLLKKKKYAALTINPDTK---VEAKELKGLDIVRRDWSQLAKETGTAVVDKILD 1154
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ D+ + I + ++ IR LD+G VPL + +I+KQLT+ PE
Sbjct: 1155 ----ASLTRDEMISAIDDLLRDIRQKLDSGTVPLEMFQISKQLTRNPE 1198
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 117/209 (55%), Gaps = 27/209 (12%)
Query: 208 NKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS--- 264
+ RM+++DA+ED++K GTVYLFGKV N S +C +IV+NI RK+Y +PRS
Sbjct: 360 DTNAIRMYWIDAYEDVHKANGTVYLFGKVKTSAN-SWGTCSIIVKNICRKVYFMPRSHVS 418
Query: 265 -------------EHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKY----AFN 306
++LKT E S+A+++ E D + ++ +FK + +EK+ +F
Sbjct: 419 QSQSNITRKYSFFQNLKTGEETSLAELHKEIGDVLKNKFHTQEFKCKMVEKELIRDESFG 478
Query: 307 LPGVPDLSEYLEVRYS---AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWL 363
G + +EV Y A LPSDL GD+FSH F T S LE LL+E+K GP W+
Sbjct: 479 NGGGTK-TPLMEVLYPVGKADKGKLPSDLKGDSFSHTFNTSVSPLERLLIEKKFMGPGWI 537
Query: 364 EFPEAEKFPSRISWCKYEVQCNQMEKIRS 392
E ++ S C+YE + + MEK+R+
Sbjct: 538 ELYNYSDPKAKTSNCQYEFEVD-MEKMRN 565
>gi|392896657|ref|NP_001255108.1| Protein Y47D3A.29, isoform b [Caenorhabditis elegans]
gi|257146921|emb|CBB16332.1| Protein Y47D3A.29, isoform b [Caenorhabditis elegans]
Length = 1456
Score = 364 bits (935), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 208/403 (51%), Positives = 279/403 (69%), Gaps = 16/403 (3%)
Query: 399 LIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLH 458
LI ++ + +L S ++I+ LN LPL IQI+ + G + SRT+MGGR+ERNE+LLLH
Sbjct: 723 LISLINWSWNDLLLS---LRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLH 779
Query: 459 AFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
AF + + PDK K+ +E + K KA YSGGLVLEPKKG Y+ I+L+DF
Sbjct: 780 AFEKADLIAPDKYNSSESKKKKEESQEGDEKKSGKAQYSGGLVLEPKKGLYETLILLLDF 839
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNIC+TT+ D ++ +P+ G+LP EI+KLVE RR VK
Sbjct: 840 NSLYPSIIQEYNICYTTLEYSKDSDEQLS-----VPQSTDIEGVLPREIRKLVECRRDVK 894
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK + Q DIRQ ALKLTANSMYGCLGF SRF+A+PLAALVTAKGREIL++
Sbjct: 895 SLMKSERNEAKK-KQMDIRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMH 953
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
+K LVE + Y V+YGDTDS+MI+ N D + K+GN+IK NK ++ LELD+DGV+K
Sbjct: 954 SKDLVEKMGYSVVYGDTDSIMINTNSVDLVAAKKLGNEIKKAVNKCHRLLELDLDGVFKR 1013
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
MLLLKKKKYAAL+I+ + + ++E+KG+D+VRRDWSQLA E G V+ +ILD
Sbjct: 1014 MLLLKKKKYAALTINPDTK---VEAKELKGLDIVRRDWSQLAKETGTAVVDKILD----A 1066
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ D+ + +I + +++IR LD+G VPL + +I+KQLT+ PE
Sbjct: 1067 SLTRDEMVSSIDDLLREIRAKLDSGTVPLEMFQISKQLTRNPE 1109
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 117/188 (62%), Gaps = 8/188 (4%)
Query: 210 KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 269
K RM+++DA+ED++K GTVYLFGKV N+ +C ++V+NI RK+Y +PR+++L T
Sbjct: 324 KAIRMYWIDAYEDVHKANGTVYLFGKVKTS-GNAWETCSIVVKNICRKVYFMPRTKNLST 382
Query: 270 KEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKY----AFNLPGVPDLSEYLEVRYSAK 324
E S+A+++ E D + ++ +FK + +EK+ +F G S +EV Y A+
Sbjct: 383 GEESSLAELHKEIGDVLRNKFNTHEFKCKMVEKELIRDESFGY-GCGTKSPLMEVLYPAE 441
Query: 325 CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQC 384
LPSDL GDTFS+ F T + LE LL+E+K GP W+E ++ S CKYE +
Sbjct: 442 KGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYNYSDPKAKTSNCKYEFEV 501
Query: 385 NQMEKIRS 392
+ MEK+R+
Sbjct: 502 D-MEKMRN 508
Score = 47.4 bits (111), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDG 158
K+ + +A ++LK + G ++ E E+VY+ V + EY + V KRQ+D++I DD G G
Sbjct: 25 KSKELSAIEQLKLARSTGKAYRPELDV-EDVYDTVDDDEYEKIVAKRQKDNFIVDDDGMG 83
Query: 159 YVEDG 163
YV++G
Sbjct: 84 YVDNG 88
>gi|224015515|ref|XP_002297409.1| hypothetical protein THAPSDRAFT_bd439 [Thalassiosira pseudonana
CCMP1335]
gi|220967910|gb|EED86279.1| hypothetical protein THAPSDRAFT_bd439 [Thalassiosira pseudonana
CCMP1335]
Length = 1141
Score = 364 bits (935), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 201/417 (48%), Positives = 278/417 (66%), Gaps = 33/417 (7%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
V + T+ + + ++M +L +LPL Q+TN+ GN+ +RT+ G R+ERNE+LLLH FH
Sbjct: 410 FVSLAQHTLNDAQLVQRLMFKLQILPLTKQLTNIAGNLWARTMKGNRAERNEYLLLHEFH 469
Query: 462 EKSYVLPDKQYGKNKKE--GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
Y++P+K+ K + E GEE G +N KA YSGGLVLEPKKG YD FI+L+DFN
Sbjct: 470 NLKYLVPEKRTAKQRSEELGEEGGASNG-----KAKYSGGLVLEPKKGLYDSFILLLDFN 524
Query: 520 SLYPSIIQEYNICFTTI-------PVRM-----LQDSDITTLCEYLPEHQVDTGILPSEI 567
SLYPS+IQEYN+CFTT+ P + Q + L P+ + G+LP I
Sbjct: 525 SLYPSLIQEYNLCFTTMEWSKSNAPANVEGGEVPQGDQLPPL----PDEGLKRGVLPRVI 580
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
K LV+ RR VK +K +++ + +IRQ+ALKLTANSMYGCLGF +SRF+AQP+AAL
Sbjct: 581 KTLVDRRRNVKKFLKTEK-NAEKKEELNIRQQALKLTANSMYGCLGFSHSRFYAQPIAAL 639
Query: 628 VTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISC---NVNDYDSVFKIGNQIKSECNK 683
VTA GRE L T L + ++ EVIYGDTDS+MI+ +VN+Y V ++GNQ+K E NK
Sbjct: 640 VTAMGRETLQRTVDLAQTSIGLEVIYGDTDSIMINTRITDVNEYPRVLELGNQVKREVNK 699
Query: 684 LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEA 743
LY LEL+IDGV++ MLLLKKKKYAA+++++ GKMI +E+KG+D+VRRDW + E+
Sbjct: 700 LYNTLELEIDGVFRSMLLLKKKKYAAVTMAEGPGGKMIFDKEMKGLDLVRRDWCIQSKES 759
Query: 744 GKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
GKFV+ QIL + + + NIH+H++K+ + +G +PL ITK L K P
Sbjct: 760 GKFVLDQILSGEEK-----EVVVSNIHDHLEKVAQQMRSGELPLDKYIITKGLNKHP 811
Score = 100 bits (250), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 93/188 (49%), Gaps = 26/188 (13%)
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKENNS----HSSCCVIVQNIDRKIYLLPRSEHLKT 269
MF+LDA E + G VYL+GKV + + + SCCV V N R +++LPR +K+
Sbjct: 5 MFWLDAAE----RNGVVYLYGKVRIPSKDPSKQKYQSCCVTVPNNQRNLFVLPR---VKS 57
Query: 270 KEP------VSIAQVYSEFDQIATQYKIL-----DFKSRKIEKKYAFNLPGVP-DLSEYL 317
P I VY+E + T I ++ +K+ + YAF P +P +YL
Sbjct: 58 TNPDEGQERYGIMDVYNEIKSVLTPSCIPHTEGSNWAGKKVTRSYAFEDPSIPRGECDYL 117
Query: 318 EVRYSAKCPALPSDLS---GDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSR 374
+V+Y K P D+ G +F + G S LEN LL+R + GP W+ +
Sbjct: 118 KVKYDGKYPVPNRDVCVNGGKSFEKILGAGASNLENFLLKRDLMGPQWVRIYNPKSIGGS 177
Query: 375 ISWCKYEV 382
ISWCK+E
Sbjct: 178 ISWCKWEC 185
>gi|392896659|ref|NP_001255109.1| Protein Y47D3A.29, isoform a [Caenorhabditis elegans]
gi|25005148|emb|CAB97239.2| Protein Y47D3A.29, isoform a [Caenorhabditis elegans]
Length = 1428
Score = 364 bits (934), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 208/403 (51%), Positives = 279/403 (69%), Gaps = 16/403 (3%)
Query: 399 LIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLH 458
LI ++ + +L S ++I+ LN LPL IQI+ + G + SRT+MGGR+ERNE+LLLH
Sbjct: 723 LISLINWSWNDLLLS---LRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLH 779
Query: 459 AFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
AF + + PDK K+ +E + K KA YSGGLVLEPKKG Y+ I+L+DF
Sbjct: 780 AFEKADLIAPDKYNSSESKKKKEESQEGDEKKSGKAQYSGGLVLEPKKGLYETLILLLDF 839
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNIC+TT+ D ++ +P+ G+LP EI+KLVE RR VK
Sbjct: 840 NSLYPSIIQEYNICYTTLEYSKDSDEQLS-----VPQSTDIEGVLPREIRKLVECRRDVK 894
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK + Q DIRQ ALKLTANSMYGCLGF SRF+A+PLAALVTAKGREIL++
Sbjct: 895 SLMKSERNEAKK-KQMDIRQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMH 953
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
+K LVE + Y V+YGDTDS+MI+ N D + K+GN+IK NK ++ LELD+DGV+K
Sbjct: 954 SKDLVEKMGYSVVYGDTDSIMINTNSVDLVAAKKLGNEIKKAVNKCHRLLELDLDGVFKR 1013
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
MLLLKKKKYAAL+I+ + + ++E+KG+D+VRRDWSQLA E G V+ +ILD
Sbjct: 1014 MLLLKKKKYAALTINPDTK---VEAKELKGLDIVRRDWSQLAKETGTAVVDKILD----A 1066
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ D+ + +I + +++IR LD+G VPL + +I+KQLT+ PE
Sbjct: 1067 SLTRDEMVSSIDDLLREIRAKLDSGTVPLEMFQISKQLTRNPE 1109
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/188 (40%), Positives = 117/188 (62%), Gaps = 8/188 (4%)
Query: 210 KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 269
K RM+++DA+ED++K GTVYLFGKV N+ +C ++V+NI RK+Y +PR+++L T
Sbjct: 324 KAIRMYWIDAYEDVHKANGTVYLFGKVKTS-GNAWETCSIVVKNICRKVYFMPRTKNLST 382
Query: 270 KEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKY----AFNLPGVPDLSEYLEVRYSAK 324
E S+A+++ E D + ++ +FK + +EK+ +F G S +EV Y A+
Sbjct: 383 GEESSLAELHKEIGDVLRNKFNTHEFKCKMVEKELIRDESFGY-GCGTKSPLMEVLYPAE 441
Query: 325 CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQC 384
LPSDL GDTFS+ F T + LE LL+E+K GP W+E ++ S CKYE +
Sbjct: 442 KGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYNYSDPKAKTSNCKYEFEV 501
Query: 385 NQMEKIRS 392
+ MEK+R+
Sbjct: 502 D-MEKMRN 508
Score = 47.4 bits (111), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDG 158
K+ + +A ++LK + G ++ E E+VY+ V + EY + V KRQ+D++I DD G G
Sbjct: 25 KSKELSAIEQLKLARSTGKAYRPELDV-EDVYDTVDDDEYEKIVAKRQKDNFIVDDDGMG 83
Query: 159 YVEDG 163
YV++G
Sbjct: 84 YVDNG 88
>gi|326432781|gb|EGD78351.1| hypothetical protein PTSG_09417 [Salpingoeca sp. ATCC 50818]
Length = 1535
Score = 364 bits (934), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 200/404 (49%), Positives = 273/404 (67%), Gaps = 10/404 (2%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++ + T + Y +++M +L +LPL QITN+ G ++SRTL GRS+RNEFLL H FH
Sbjct: 824 LIQLVDHTERDAYYSLQLMFKLQILPLMKQITNITGGLMSRTLTRGRSDRNEFLLCHEFH 883
Query: 462 EKSYVLPD---KQYGKNKKEGEETGEANK-GKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
+ Y++PD + GKNKK+ ++ G+ + R+K Y+GGLVLEPK+GFYD +I+L+D
Sbjct: 884 RRKYIVPDVPERNSGKNKKDSDDGGDGKESASSRRKPKYAGGLVLEPKRGFYDNYILLLD 943
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYN+CFTT+ L D + E +P+ D GILP +K L+ R+QV
Sbjct: 944 FNSLYPSIIQEYNLCFTTVKRDHLSDDMEDSFAE-IPDETADKGILPRILKTLIAKRKQV 1002
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
KAL+K + L +YDIRQKALKLTANSMYGCLGF SRF+A+P+A L+T KGREIL
Sbjct: 1003 KALIKA-ETNPARLAEYDIRQKALKLTANSMYGCLGFVGSRFYAKPIAELITTKGREILQ 1061
Query: 638 NTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
NT L +N +N +VIYGDTDS+MI+ DY +IG+++K E N LY++LE+DIDGVY
Sbjct: 1062 NTVDLAQNKMNLDVIYGDTDSIMINTRSRDYKETRQIGHRVKKEVNALYRELEIDIDGVY 1121
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
K MLLLKKKKYAAL+I + +G +E KG+D+VRRDW LA G ++++IL ++
Sbjct: 1122 KTMLLLKKKKYAALTIVENKDGTFRTERETKGLDIVRRDWCGLAHRIGNIILNKILTQEQ 1181
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
D ++ HE + K+ G +PL I K LTK P
Sbjct: 1182 ---GQRDKLVEECHEELHKVGESAREGTIPLEEYIIHKSLTKDP 1222
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 86/149 (57%), Gaps = 9/149 (6%)
Query: 201 PLATDHENKKVFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
P D+E ++V ++LDA+E + + G VYLFGKVFV+ + + SCCV V+ ++R ++
Sbjct: 423 PPLDDYEGEQVLHFYWLDAYELPFDNKSGAVYLFGKVFVESVSEYVSCCVTVRGLERNLF 482
Query: 260 LLPR-----SEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLS 314
+LPR ++ T E V + V+ E D + ++ I ++ +E+ YAF GVP +
Sbjct: 483 VLPREFKVDAQGNDTTEKVEMGDVFEEVDTLLSRRGISTRLAKPVERNYAFEEKGVPANA 542
Query: 315 EYLEVRYSAKCPALPSDLSGDTFSHVFGT 343
E+L+++Y A+ L S L ++V T
Sbjct: 543 EFLKIKYPAR---LGSSLVAHMHNNVHTT 568
>gi|313236818|emb|CBY12070.1| unnamed protein product [Oikopleura dioica]
gi|313241440|emb|CBY33695.1| unnamed protein product [Oikopleura dioica]
Length = 1387
Score = 356 bits (913), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 205/383 (53%), Positives = 261/383 (68%), Gaps = 25/383 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
I + LPLA+QITN+CGN+LSRTL GR+ERN +LLLHAFH+K + LP Y KK+
Sbjct: 719 ISSNIQSLPLAVQITNICGNILSRTLSRGRAERNAYLLLHAFHKKDH-LPPPPY---KKK 774
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
E G+ +K ++GG+VLEPKKG Y +I+L+DFNSLYPSIIQEYNICFTT +
Sbjct: 775 TVEDGD------KKGPKFAGGMVLEPKKGLYTNYILLLDFNSLYPSIIQEYNICFTTTAM 828
Query: 539 RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQ 598
+ DI+T LP+ ++ GILP EIKKLV R++VK L+K ++D L + +IRQ
Sbjct: 829 QAPPGEDISTWLPDLPK-TMEEGILPFEIKKLVNRRKEVKKLIKNEK-NADELARLNIRQ 886
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSL 658
LKLTANSMYGCLGF SRF AQPLAALVTAKGREIL TK VE +N EV+YGDTDS+
Sbjct: 887 LGLKLTANSMYGCLGFTASRFCAQPLAALVTAKGREILEATKVFVEKMNLEVVYGDTDSI 946
Query: 659 MISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
MI+ N + V K+GN +K E NK Y+ LE+DIDG YK MLLLKKKKYAA+ NG
Sbjct: 947 MINSNSTNISEVMKLGNLVKKEVNKHYRLLEIDIDGAYKSMLLLKKKKYAAID----QNG 1002
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
K +E KG+D+VRRDWS++A G+ ++ +L EQ ++ ++ IHEH++ I T
Sbjct: 1003 K----EEFKGLDIVRRDWSEIARNEGRTILKLLLHEQDE-----EEGVRKIHEHLEMIGT 1053
Query: 779 DLDNGFVPLTLLEITKQLTKAPE 801
L+N I K LTKAPE
Sbjct: 1054 KLENKEYRTVDYRIQKALTKAPE 1076
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 87/185 (47%), Gaps = 10/185 (5%)
Query: 208 NKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL 267
++ +++LDA+E Y + G +YL G+ V SCC+I+ NI +Y+LPR
Sbjct: 299 DENCLNLYWLDAYETQYNKSGKLYLTGRANVA--GELKSCCLIISNIPHVVYILPR---- 352
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
E VY E + + K+ +K++ ++KK F GVP +EYL V Y K P
Sbjct: 353 ---ENSDTGDVYEEIGEWMDKNKVDSWKAKPMKKKNFFGGAGVPPEAEYLRVEYGPKNPL 409
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP-SRISWCKYEVQCNQ 386
+ S + G FSHVF E LER I GP WL ISWC E C
Sbjct: 410 MSSTMKGAHFSHVFNVNQPLFEFFALERNIMGPCWLSISSYSPVSGGAISWCSVEYDCTD 469
Query: 387 MEKIR 391
++
Sbjct: 470 YRAVQ 474
>gi|302409208|ref|XP_003002438.1| DNA polymerase alpha catalytic subunit [Verticillium albo-atrum
VaMs.102]
gi|261358471|gb|EEY20899.1| DNA polymerase alpha catalytic subunit [Verticillium albo-atrum
VaMs.102]
Length = 1231
Score = 353 bits (905), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 221/573 (38%), Positives = 314/573 (54%), Gaps = 62/573 (10%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
MF+ D E G++ LFGKV K+ H SC V + NI RK++ LPR ++
Sbjct: 344 LNMFWTDYTE----VSGSLCLFGKVLNKKTGQHVSCFVKIDNILRKLFFLPRETRVQGGI 399
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP- 326
T + V + VYSE D + T+ KI +K++ ++ K L GV D S L + K P
Sbjct: 400 DTCDEVGMVDVYSEVDALMTKMKIGKYKTKSLQPK----LEGV-DYSVLLNRIHEKKTPQ 454
Query: 327 ----------ALPSDLSGDTFSHVFGTKTSFLENLLLE--------RKIKGPSWLEFPEA 368
PS + G T +VF + LL + K SW
Sbjct: 455 WSRLGRLRRTVWPSSI-GKTGGNVFAERQVMSGRLLCDLANDAGKSAMYKCQSW------ 507
Query: 369 EKFPSRISWCKYEVQCNQMEKIRSKQGLIYLI------GIVEFIKFTMLHSSYIIKIMCE 422
S C + N + + G ++++ + +I + +
Sbjct: 508 ----SLTEMCSLYLSGNNHRRELDNDAALKTWASHSKEGFMDYVTHIEADTYFIAALALQ 563
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ---YGKNKKEG 479
+ +LPL +TN+ GN +RTL G R+ERNE++LLH FH Y+ PDKQ GK KE
Sbjct: 564 VQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEFHRNKYICPDKQGFQRGKGAKED 623
Query: 480 EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR 539
EE G +KK + GGLV +P+KG YDKF+++MDFNSLYPSIIQE+NICFTT+
Sbjct: 624 EE------GDSKKKDKFKGGLVFDPEKGLYDKFVLVMDFNSLYPSIIQEFNICFTTVDRT 677
Query: 540 MLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599
+ + + + Q GILP I LV R+QVK+LMK + + L +DI+Q
Sbjct: 678 AKLEDEEEVPEVPVDQEQ---GILPKLIATLVSRRKQVKSLMKDKTATPEQLATWDIKQL 734
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +TK L E+ +VIYGDTDS+M
Sbjct: 735 ALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTKELAESRALQVIYGDTDSVM 794
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGK 719
I+ NV + FK+G + K N+ Y+ LE+DID V++ +LL KKKYAA+++ + +NGK
Sbjct: 795 INANVENVADAFKVGAEFKKAVNERYRLLEIDIDNVFRRILLQAKKKYAAINLVE-NNGK 853
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
I E+KG+D+ RR++ L+ E ++ +IL
Sbjct: 854 YIEKMEVKGLDMKRREYCGLSKEISGKLLDEIL 886
Score = 48.1 bits (113), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADE--NVYEEVSEKEYTERVLKR-QEDDWIDDDG 155
KT++ A +LK L+ G K + D+ +YEEV E +Y + V R EDD++ DD
Sbjct: 3 KTDRRAKLAELKALRQAGKKAFDNYQVDDINELYEEVDETQYKKIVRDRLNEDDFVVDDN 62
Query: 156 GDGYVEDGREIFD 168
G+GY +DGRE +D
Sbjct: 63 GEGYADDGREEWD 75
>gi|164655126|ref|XP_001728694.1| hypothetical protein MGL_4173 [Malassezia globosa CBS 7966]
gi|159102577|gb|EDP41480.1| hypothetical protein MGL_4173 [Malassezia globosa CBS 7966]
Length = 1409
Score = 352 bits (903), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 187/401 (46%), Positives = 266/401 (66%), Gaps = 19/401 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ + + + + + C++ +L L Q+TN+ GN SRTL GGR+ERNE++LLH FH
Sbjct: 693 LLTFVRHCEVDAFFQMAMACKMQLLALTKQLTNLAGNAWSRTLNGGRAERNEYILLHEFH 752
Query: 462 EKSYVLPDKQYGKNKKEGE-ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
+K Y+ PDKQ +KK + E G A K K + GGLV EPK+G +DK+I++MDFNS
Sbjct: 753 KKKYICPDKQSMWDKKAAKKEEGSAKKEK------FKGGLVFEPKRGLWDKYILVMDFNS 806
Query: 521 LYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
LYPSIIQEYNI FTT+ QD D +P V G+LP I LV RRQVKAL
Sbjct: 807 LYPSIIQEYNIDFTTVERHADQDGDDV---PDVPSSDVAQGVLPHLIATLVNRRRQVKAL 863
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK + + +Q++I+Q+ALKLTANSMYGCLG+ NSRF+A+PLAAL T KGREIL T+
Sbjct: 864 MKDKHAPALKQLQWNIKQQALKLTANSMYGCLGYENSRFYARPLAALTTFKGREILSTTR 923
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
L E+++ +VIYGDTDS+MI+ DY + KIG++ + N+ Y+ LE+DIDGV++ ML
Sbjct: 924 ELAESMSLDVIYGDTDSVMINTRCIDYQAAIKIGHEFRRAVNERYRLLEIDIDGVFQRML 983
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
LL+KKKYAAL L N EIKG+D+ RR++ L+ A +V+ QIL +
Sbjct: 984 LLQKKKYAAL----LVNETGATQTEIKGLDMKRREYCALSKRASAYVLEQILSGE----- 1034
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + ++ +HE+++++ TD+ G +PL I K+L K P+
Sbjct: 1035 ATETVVEKMHEYLQQLATDVREGRIPLDDYVIYKRLGKRPQ 1075
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 11/190 (5%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
++ + F++D F+ G ++LFGKV + N + S V + ++R ++LLPR+
Sbjct: 286 QDDRSVHFFWIDYFD----ANGKIFLFGKVLDRATNKYVSASVAIDGMERCVFLLPRTRT 341
Query: 267 LKTKEPVSIAQ----VYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
+ + V+ EF+ + ++Y I + + + +KYAF LP VP YL+V+Y
Sbjct: 342 IVDGHETDMVPGEDDVFEEFETMRSRYGIKSWLGKWVRRKYAFELPDVPAEGPYLKVKYG 401
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE--KFPSRISWCKY 380
PALP+D+SG TFS FGT TS E L+L+R+I GP WL +A P R +W K
Sbjct: 402 FDEPALPADISGATFSRAFGTHTSAFELLVLKRRIMGPCWLRIEQASLPSGPPR-TWTKL 460
Query: 381 EVQCNQMEKI 390
E++ + + +
Sbjct: 461 ELEVDDPKSV 470
>gi|332030575|gb|EGI70263.1| DNA polymerase alpha catalytic subunit [Acromyrmex echinatior]
Length = 1447
Score = 351 bits (900), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 193/402 (48%), Positives = 257/402 (63%), Gaps = 61/402 (15%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ + T+ + YII I+ +LNV+PLA+QIT
Sbjct: 775 VLNLMHVTLKEAKYIITIVMDLNVIPLALQIT---------------------------- 806
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
L D G RK AAY+GGLVLEPKKGFYDK ++LMDFNSL
Sbjct: 807 ----CLAD------------------GPRRKAAAYTGGLVLEPKKGFYDKLVLLMDFNSL 844
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
YPSIIQEYN+CFTT+P D + T+ PE ++ G++P+EI KLV+SR+Q+K LM
Sbjct: 845 YPSIIQEYNLCFTTVPGAAYTDVEQLTI----PESNLEPGVVPTEIHKLVKSRQQIKQLM 900
Query: 582 K-QPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
K Q NLS M Y IRQ ALKLTANSMYGCLG + RF+A+ LAAL+TAKGREIL +TK
Sbjct: 901 KTQKNLSPAQKMDYHIRQMALKLTANSMYGCLGATHCRFYAKGLAALITAKGREILEDTK 960
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
LVE L YEVIYGDTDSLMI+ N+ +YD VF IG +I E N YK++ELDIDGV++Y+L
Sbjct: 961 HLVEKLQYEVIYGDTDSLMINTNILEYDDVFLIGKKIMREVNNRYKKVELDIDGVFRYLL 1020
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
LL+KKKYAA+ +SK+ +G++ +QE KG+D+VRRDW LA + GK ++ +L +QS
Sbjct: 1021 LLQKKKYAAVMMSKI-DGQIQLTQEHKGLDIVRRDWCPLACDTGKKILDILLCDQSS--- 1076
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ RL+ + + ++ + + G PL+ ITKQL+K P+
Sbjct: 1077 --ETRLEQVVQILQNVAKSVKEGTTPLSSFVITKQLSKNPDA 1116
Score = 180 bits (457), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 120/182 (65%), Gaps = 3/182 (1%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
VFR ++LDA+E+ YK PGTVYLFGK +V ++++ SCCV+V I R+IYLLPR +++K
Sbjct: 381 VFRFYYLDAYENPYKNPGTVYLFGKTYVSSHDTYCSCCVMVHCIPRRIYLLPR-KYIKNT 439
Query: 271 EP--VSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPAL 328
E ++ VY EFD+ A + +I++F ++++K Y+F G P S+YLEVRY+A+ PA+
Sbjct: 440 ESQLTTMEDVYKEFDEYANKMRIMEFNCKEVKKHYSFEKEGTPKTSDYLEVRYNARYPAI 499
Query: 329 PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQME 388
S+ SG HVFGT + LE LL+ERKIKGP WL+ R +WC V + M
Sbjct: 500 DSNYSGPAIEHVFGTTVNALELLLIERKIKGPCWLDIKNISPTAGRFAWCPQIVVTSDMN 559
Query: 389 KI 390
I
Sbjct: 560 NI 561
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
IDKT + +A ++LK+ + G K KYE ENVY+EV EKEY+ VLKRQ DDWI DDG
Sbjct: 35 IDKTGRLSALERLKEARS-GNKRKYEVEELENVYDEVDEKEYSNTVLKRQRDDWIVDDGE 93
Query: 157 DGYVEDGREIFDDDIED 173
GY+EDGREIFDDD+++
Sbjct: 94 SGYIEDGREIFDDDLDE 110
>gi|116191701|ref|XP_001221663.1| hypothetical protein CHGG_05568 [Chaetomium globosum CBS 148.51]
gi|88181481|gb|EAQ88949.1| hypothetical protein CHGG_05568 [Chaetomium globosum CBS 148.51]
Length = 1474
Score = 350 bits (899), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 276/428 (64%), Gaps = 14/428 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + +I + +LPL +TN+ GN +RTL G R+ERNE++LLHAF
Sbjct: 752 GLIDYLSHAEADTYFISALAFRTQILPLTKVLTNLAGNSWARTLTGTRAERNEYILLHAF 811
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGK-GRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
H+K ++ PDKQ K + +E + + G +KK Y GGLV EP++G YDKF+++MDFN
Sbjct: 812 HKKRFICPDKQPFKGRGRADEEDQEDGGADSKKKDKYKGGLVFEPERGLYDKFVLVMDFN 871
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQEYNICFTT+ + D + +PE + + GILP I +LV+ RRQVK
Sbjct: 872 SLYPSIIQEYNICFTTVDRSFVSDDEDGV--PPVPEDK-ELGILPKLISELVDRRRQVKG 928
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK ++ + L YDI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +T
Sbjct: 929 LMKAKGITPEQLATYDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREILRST 988
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E ++ +VIYGDTDS+MI+ NV++ FK+G K+E NK YK+LE+DID V++ +
Sbjct: 989 KDLAEGMSLQVIYGDTDSVMINANVDNVADAFKVGRAFKAEVNKRYKRLEIDIDNVFRRI 1048
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA+++ ++ +GK I E+KG+D+ RR++ L+ + K ++ +IL S D
Sbjct: 1049 LLQAKKKYAAMNLVEV-DGKFIEEMEVKGLDMKRREYCPLSRDISKRILDEIL---SGDD 1104
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLSRN 815
L +Q IHE+++ I + + + + I QL K+P+ + Q+ L
Sbjct: 1105 IELS--IQRIHEYLRDISSKMREQAIATSKYIILTQLGKSPKEYPNADSMPQVQVALREL 1162
Query: 816 RRGRRRRR 823
RG+ R+
Sbjct: 1163 ARGKTMRK 1170
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 102/185 (55%), Gaps = 11/185 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
MF+ D + +++ G++ LFGKV K+ H SC V V NI RK+Y LPR +
Sbjct: 350 LNMFWTD-YTEVH---GSLCLFGKVLNKKTGHHVSCFVKVDNILRKLYFLPRKHRVQRGV 405
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
KT E V + VYSE D I T+ + K + +KYAF LP +P ++Y+++ Y PA
Sbjct: 406 KTTEQVEMMDVYSEVDTIMTKMNVNMHKIKTCTRKYAFELPDIPKKAQYMKLLYPYTKPA 465
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQCN 385
+ G+TFSHVFGT TS E +L + + GP WL +A+ F + S C+ EV +
Sbjct: 466 IELGTKGETFSHVFGTNTSLFEQFVLWKNVMGPCWLRIKDAD-FGALKNASHCRLEVLVD 524
Query: 386 QMEKI 390
E +
Sbjct: 525 NPEMV 529
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDD 153
+ K +K F +L+ L+ G K+ YE ++YEEV E +Y + V R EDD++ D
Sbjct: 1 MSKASKRGRFAELRALRQSGKKNFDTYEVEDAADLYEEVDENQYKKIVRDRLNEDDFVVD 60
Query: 154 DGGDGYVEDGREIFD 168
D G+GY +DGRE +D
Sbjct: 61 DNGEGYADDGREEWD 75
>gi|170592803|ref|XP_001901154.1| DNA polymerase alpha catalytic subunit [Brugia malayi]
gi|158591221|gb|EDP29834.1| DNA polymerase alpha catalytic subunit, putative [Brugia malayi]
Length = 1292
Score = 350 bits (897), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 199/416 (47%), Positives = 274/416 (65%), Gaps = 28/416 (6%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ FI + + + I+ ELN LPL IQIT + G VLSRT++GGR+ERNE+LLLHAF+
Sbjct: 688 LIRFINNAWMDAWLSLAIIVELNALPLFIQITKIVGGVLSRTVLGGRAERNEYLLLHAFN 747
Query: 462 EKSYVLPDKQYGKNKK-----------EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+ YV P+K +KK G+ NK +K Y+GGLVL+PK G YD
Sbjct: 748 KAGYVAPNKYQSDSKKRKQSQLRDTRSADNHPGDYNKILQNRKGQYAGGLVLDPKMGLYD 807
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT--GILPSEIK 568
FI+L+DFNSLYPSIIQEYNICFTT+ + ++ +PE D GILP EI+
Sbjct: 808 TFILLLDFNSLYPSIIQEYNICFTTVDMSKKDKNE-------MPELPTDANEGILPREIR 860
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
LVE RR VK +MK L+ QYDIRQ LKLTANSMYGCLGF SRF+A+PLAAL+
Sbjct: 861 SLVERRRDVKRMMKSEKLTEQQRQQYDIRQMGLKLTANSMYGCLGFQQSRFYAKPLAALI 920
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNV---NDYDSVFKIGNQIKSECNKLY 685
TA+GREIL++TK LVE Y VIYGDTDS+MI+ ++ V K+GN IK N+ Y
Sbjct: 921 TAQGREILMHTKDLVEKSGYSVIYGDTDSVMINTGFSERSELQHVKKLGNDIKKIINQSY 980
Query: 686 KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGK 745
K+LE+DIDG++ +LLLKKKKYA L++ L++ + I +EIKG+D+VRRD+S + E G
Sbjct: 981 KKLEIDIDGIFIKLLLLKKKKYAGLAVD-LNDERKI-KREIKGLDIVRRDYSFIVKEIGN 1038
Query: 746 FVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
++ IL QS + D+ ++ IH ++K++ ++ + +++ +I KQLT+ P+
Sbjct: 1039 EILDIILSVQS---QNRDEIIEQIHSRLQKLKEEISQELLEISMFQIFKQLTRNPD 1091
Score = 151 bits (382), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 120/193 (62%), Gaps = 8/193 (4%)
Query: 204 TDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHS-SCCVIVQNIDRKIYLLP 262
T+ E + V R ++LDAFED K PGTVYLFG++ N S S SCCV+V+NI R+++ LP
Sbjct: 325 TNLEGELVLRFYWLDAFEDPIKMPGTVYLFGRLI---NGSISESCCVVVKNIWRQVFFLP 381
Query: 263 RSEHLKTK---EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEV 319
R +HL + + V + QV E +I + K R EKK+A+N VP ++ LEV
Sbjct: 382 REKHLVNEVQTDEVDLMQVNEEVQKILRSMGVKVVKCRPCEKKFAYNDGIVPQNAQVLEV 441
Query: 320 RYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCK 379
+YS P LP DLSG+TFSHVF T + +E LL+E +KGPSW+E ++++ K
Sbjct: 442 QYSFNDPRLPMDLSGETFSHVFNTTANAMERLLVETGMKGPSWIEISGCNVSSLQVTYVK 501
Query: 380 YEVQCNQMEKIRS 392
+E + ME+++S
Sbjct: 502 HEFTVD-MERMKS 513
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFT-ADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDG 163
A +++K + G H+ + VYEEV E EY V +RQ+DD++ DD G GYV+ G
Sbjct: 40 ALEEMKRARDAGTVHRVNVANLVKPVYEEVDEDEYVRIVQERQKDDFVVDDDGSGYVDHG 99
Query: 164 REIFDDDIEDVPQKKEKHDKRKKNK 188
+ FD++ +K K +R+ +K
Sbjct: 100 FDFFDEEQCTATRKAMKAKERRGDK 124
>gi|449548212|gb|EMD39179.1| hypothetical protein CERSUDRAFT_112852 [Ceriporiopsis subvermispora
B]
Length = 1462
Score = 349 bits (896), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 185/406 (45%), Positives = 261/406 (64%), Gaps = 16/406 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ L + Y + + ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 760 LLTFVRHCELDAHYQMALAAKVQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFH 819
Query: 462 EKSYVLPDKQYGKNKKEGE------ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIIL 515
Y+ PDK YGK E E G+ K K+ Y GGLV EPK+G +DKFI++
Sbjct: 820 RLKYICPDKLYGKKAATAEKADAQDEDGDGKKTSKSKRDKYKGGLVFEPKRGLWDKFILV 879
Query: 516 MDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRR 575
MDFNSLYPSIIQEYNI FTT+ + +D D P +V G+LP I LV RR
Sbjct: 880 MDFNSLYPSIIQEYNIDFTTVD-KAEEDDDGEEKIPEPPSSEVAQGVLPRLIATLVSRRR 938
Query: 576 QVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREI 635
QVKALMK + LMQ+DI+Q ALKLTANSMYGCLGF SRF+A+PLAAL T KGREI
Sbjct: 939 QVKALMKDKKATQAQLMQWDIKQIALKLTANSMYGCLGFEYSRFYARPLAALTTFKGREI 998
Query: 636 LLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGV 695
L +T+ L E+L +V+YGDTDS+ ++ NV D KI + +K N YK LE+D+DG+
Sbjct: 999 LTHTRELAESLQLDVVYGDTDSVFVNSNVTDLAEALKISSDLKKAVNDRYKLLEIDLDGI 1058
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
++ +LLL+KKKYAA+ + + +GK S E+KG+D+ RR++ L+ A ++++ QIL +
Sbjct: 1059 FQRLLLLQKKKYAAVKVEQ--DGKT--STEVKGLDMKRREYCALSKAASQYILEQILSGE 1114
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + ++ IHE++ + D+ G + L I K+L K PE
Sbjct: 1115 -----ATETVVERIHEYLMTLGEDVRAGKIKLDEFIIFKRLGKNPE 1155
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 23/234 (9%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E R F+LD E G +Y GK K + SCCV V+N+ R +++LPR
Sbjct: 349 EQDGSLRFFWLDYLE----HDGRLYFTGKAQDKTTKAWLSCCVTVENLQRNLFVLPRERR 404
Query: 267 LKTKEPVS----------IAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSE 315
++ E + +Y++FD+I + I +K++ +++KYAF VP S+
Sbjct: 405 IEEDEMTGEVYETDVVPELTDIYNDFDRIRKKANIKKWKAKFVKRKYAFGEKDVPKGESQ 464
Query: 316 YLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRI 375
+L+V Y P LP++LS + VFGT TS E L+L+RKI GP WL+ + +
Sbjct: 465 WLKVVYGFDEPQLPNNLSSPNIARVFGTNTSAFELLVLKRKIMGPCWLQIKKPVLDTKGV 524
Query: 376 SWCKYEVQCNQMEKI--------RSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
SWCK E + + I ++ +GL L + I+ + H + I +I+C
Sbjct: 525 SWCKVEAVVSDPKDINPFSDSDPQAPKGLPPLTVMSLSIRTIVNHKANIREIVC 578
>gi|347833010|emb|CCD48707.1| similar to DNA polymerase alpha catalytic subunit [Botryotinia
fuckeliana]
Length = 1471
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 189/401 (47%), Positives = 267/401 (66%), Gaps = 10/401 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + +I + ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 765 GLMDYISHCEADTYFIAALALKVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 824
Query: 461 HEKSYVLPDKQYGKNKKEGEE-TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
H Y+ PDK K K++ EE + G +KK Y GGLV EP+KG YDKF+++MDFN
Sbjct: 825 HRNKYICPDKAVFKGKQQVEEENADEENGDVKKKDKYKGGLVFEPEKGLYDKFVLVMDFN 884
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQEYNICFTT+ R+ +D + E +P+ Q D GILP I LV RRQVK+
Sbjct: 885 SLYPSIIQEYNICFTTVD-RLNLSNDEDRVPE-VPKDQ-DQGILPKLIATLVSRRRQVKS 941
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + +S+ L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +T
Sbjct: 942 LMKDKHATSEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRST 1001
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E+ + +VIYGDTDS+MI+ NV++ +GN K N LY+ LE+DID V++ +
Sbjct: 1002 KDLAESKSLQVIYGDTDSVMINANVDNIQDALAVGNDFKKSVNDLYRLLEIDIDNVFRRI 1061
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA+++ ++ +GK I E+KG+D+ RR++ L+ E V SQ+L+E D
Sbjct: 1062 LLQAKKKYAAINLVQV-DGKFIDKMEVKGLDMKRREYCNLSKE----VSSQLLNEILSGD 1116
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
S + + IH+++++I T + G VP+ I +L KAP
Sbjct: 1117 DS-EAVITRIHDYLREISTKMREGNVPVQKYTIYTKLGKAP 1156
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 100/201 (49%), Gaps = 27/201 (13%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
MF+ D E G + LFGKV K+ + SC V V N+ RK++ LPR +
Sbjct: 348 LHMFWTDYTE----MHGNLCLFGKVKNKKTGTFVSCFVKVDNVLRKLFFLPRQYRQRNGR 403
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEV--RYSAKC 325
T + V + VY E D + T+ K+ K + +KYAF LP +P EYL++ YS+KC
Sbjct: 404 DTTDEVEMKDVYEEVDSMMTKMKVGMHKIKPCTRKYAFELPEIPKEGEYLKLLYPYSSKC 463
Query: 326 -------------PALPSD-LSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
AL D +G TFSHVFG T E +L + I GP WL+ +A+ F
Sbjct: 464 EIHHLATRLTTLDHALNVDQQTGSTFSHVFGANTPLFEQFVLWKNIMGPCWLKIEDAD-F 522
Query: 372 PS--RISWCKYEVQCNQMEKI 390
+ S+CK EVQ + I
Sbjct: 523 GALKNASYCKLEVQVTKPNLI 543
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A F +L+ L+ G K YE E++YEEV E+ Y + V R +DD++ DD G+GY
Sbjct: 9 AKFAELRALRESGKKRLDTYEVHQGEDLYEEVDEEGYKKVVRNRLDQDDFVIDDNGEGYA 68
Query: 161 EDGREIFDDD 170
+DGRE +D D
Sbjct: 69 DDGREDWDRD 78
>gi|154305854|ref|XP_001553328.1| hypothetical protein BC1G_08158 [Botryotinia fuckeliana B05.10]
Length = 1456
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 189/401 (47%), Positives = 267/401 (66%), Gaps = 10/401 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + +I + ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 750 GLMDYISHCEADTYFIAALALKVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 809
Query: 461 HEKSYVLPDKQYGKNKKEGEE-TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
H Y+ PDK K K++ EE + G +KK Y GGLV EP+KG YDKF+++MDFN
Sbjct: 810 HRNKYICPDKAVFKGKQQVEEENADEENGDVKKKDKYKGGLVFEPEKGLYDKFVLVMDFN 869
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQEYNICFTT+ R+ +D + E +P+ Q D GILP I LV RRQVK+
Sbjct: 870 SLYPSIIQEYNICFTTVD-RLNLSNDEDRVPE-VPKDQ-DQGILPKLIATLVSRRRQVKS 926
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + +S+ L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +T
Sbjct: 927 LMKDKHATSEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRST 986
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E+ + +VIYGDTDS+MI+ NV++ +GN K N LY+ LE+DID V++ +
Sbjct: 987 KDLAESKSLQVIYGDTDSVMINANVDNIQDALAVGNDFKKSVNDLYRLLEIDIDNVFRRI 1046
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA+++ ++ +GK I E+KG+D+ RR++ L+ E V SQ+L+E D
Sbjct: 1047 LLQAKKKYAAINLVQV-DGKFIDKMEVKGLDMKRREYCNLSKE----VSSQLLNEILSGD 1101
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
S + + IH+++++I T + G VP+ I +L KAP
Sbjct: 1102 DS-EAVITRIHDYLREISTKMREGNVPVQKYTIYTKLGKAP 1141
Score = 106 bits (265), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 95/186 (51%), Gaps = 12/186 (6%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
MF+ D E G + LFGKV K+ + SC V V N+ RK++ LPR +
Sbjct: 348 LHMFWTDYTE----MHGNLCLFGKVKNKKTGTFVSCFVKVDNVLRKLFFLPRQYRQRNGR 403
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T + V + VY E D + T+ K+ K + +KYAF LP +P EYL++ Y A
Sbjct: 404 DTTDEVEMKDVYEEVDSMMTKMKVGMHKIKPCTRKYAFELPEIPKEGEYLKLLYPYSNHA 463
Query: 328 LPSD-LSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQC 384
L D +G TFSHVFG T E +L + I GP WL+ +A+ F + S CK EVQ
Sbjct: 464 LNVDQQTGSTFSHVFGANTPLFEQFVLWKNIMGPCWLKIEDAD-FGALKNASHCKLEVQV 522
Query: 385 NQMEKI 390
+ I
Sbjct: 523 TKPNLI 528
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A F +L+ L+ G K YE E++YEEV E+ Y + V R +DD++ DD G+GY
Sbjct: 9 AKFAELRALRESGKKRLDTYEVHQGEDLYEEVDEEGYKKVVRNRLDQDDFVIDDNGEGYA 68
Query: 161 EDGREIFDDD 170
+DGRE +D D
Sbjct: 69 DDGREDWDRD 78
>gi|412991410|emb|CCO16255.1| DNA polymerase alpha catalytic subunit [Bathycoccus prasinos]
Length = 1670
Score = 348 bits (892), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 188/413 (45%), Positives = 269/413 (65%), Gaps = 28/413 (6%)
Query: 404 EFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEK 463
+ K + + Y + +M L LPL Q++N+ GN S+TL R++R EFL LH FH++
Sbjct: 880 QLTKNSQTDAFYSLWLMLHLQALPLTRQLSNIAGNTWSKTLGHTRAQRVEFLFLHEFHKR 939
Query: 464 SYVLPDKQYGKNKKEGEETGEANKGKG------RKKAAYSGGLVLEPKKGFYDKFIILMD 517
Y++PD+ K K+ + EA G G +K YSGGLVLEPKKG YDK+++++D
Sbjct: 940 KYMVPDRLSAKEKRR-VQAAEAKNGNGDKDVDDKKGPQYSGGLVLEPKKGLYDKYVLMLD 998
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV------DTGILPSEIKKLV 571
FNSLYPSIIQEY+ICFTT+ + D+ L LP + + +LP I KLV
Sbjct: 999 FNSLYPSIIQEYDICFTTVK----RGKDMAGLAPELPPPVLGKPGGENAAVLPQVICKLV 1054
Query: 572 ESRRQVKALMKQPNLSSDLL-MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
+ RR VK L+K+ ++D++ Q DIRQ ALKLTANSMYGCLGF SRF+A+PLA L+T
Sbjct: 1055 QHRRAVKELLKKE--TNDVIKAQLDIRQLALKLTANSMYGCLGFSASRFYAKPLAELITG 1112
Query: 631 KGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+GREIL +T L +NL+Y+VIYGDTDS+MI+ N ++ V K+G ++K E NK YK LE+
Sbjct: 1113 QGREILQSTVDLAQNLSYDVIYGDTDSIMINTNKDNLAEVHKVGQEVKREVNKRYKLLEI 1172
Query: 691 DIDGVYKYMLLLKKKKYAALSI-SKLSNGKMICSQEI--KGVDVVRRDWSQLASEAGKFV 747
++DG Y+ MLLLKKKKYAA+ + + GK I + + KG+D VRRDW +LA + G
Sbjct: 1173 EMDGCYRSMLLLKKKKYAAVVVEPSMHEGKTIYVERVEKKGLDTVRRDWCKLAKDVGDTC 1232
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+ +I ++ +++D ++ IH+ +++ RT + N V L +TKQLTK+P
Sbjct: 1233 LDEIFKKR-----AVEDTVEKIHDALREARTKMVNNQVNLESYIVTKQLTKSP 1280
Score = 107 bits (267), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 113/235 (48%), Gaps = 54/235 (22%)
Query: 197 DDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHS---------SC 247
D LP+ + K +FLDA EDI PGTV+LFGKV + + + S
Sbjct: 386 DSGLPV---DDFDKTLPFYFLDAQEDI-GSPGTVFLFGKVPTRRDPQTNVLDPSLGTVSS 441
Query: 248 CVIVQNIDRKIYLLPR----------SEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSR 297
C +V N+ R ++++PR S LKT E + A+ S+ D++A K L K++
Sbjct: 442 CAVVNNMQRCVFVVPRLEFTPQSLDESNELKTLEEKANAKDASKADKVAL-LKWLQVKTK 500
Query: 298 KIE---------------------KKYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGD 335
++ +KY F +P +Y ++++YS ALPSD+ G+
Sbjct: 501 PVKDELKKIMSERGVDQYTMKPVYRKYCFERNDIPSGGQYVIKLKYSYLNSALPSDIKGE 560
Query: 336 TFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRI--------SWCKYEV 382
TF GT+T+ LE+LL++ KI GPSWL AE P SWCK EV
Sbjct: 561 TFCGALGTQTNALEHLLVKSKIMGPSWLALHNAEIVPQATLKDKEAMKSWCKLEV 615
>gi|367026708|ref|XP_003662638.1| hypothetical protein MYCTH_2061829 [Myceliophthora thermophila ATCC
42464]
gi|347009907|gb|AEO57393.1| hypothetical protein MYCTH_2061829 [Myceliophthora thermophila ATCC
42464]
Length = 1483
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 187/430 (43%), Positives = 277/430 (64%), Gaps = 18/430 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + +I + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 754 GLMDYLTHAETDTYFIAALALRTQILPLTKILTNLAGNSWARTLTGTRAERNEYILLHEF 813
Query: 461 HEKSYVLPDKQYGKNK-KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
H + Y+ PDKQ + + + EE E + G+G+KK Y GGLV EP+KG YDKF+++MDFN
Sbjct: 814 HNQKYICPDKQPLRGRGRFDEENQEEDGGEGQKKDKYKGGLVFEPEKGLYDKFVLVMDFN 873
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV--DTGILPSEIKKLVESRRQV 577
SLYPSIIQEYNICFTT+ + ++ E +P + ILP I++LVE R+ V
Sbjct: 874 SLYPSIIQEYNICFTTV-----DRTSVSGDEEGVPPVPTVKEEAILPKLIRRLVERRKVV 928
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK PN + + + +DI+Q ALKLTANSMYGCLGF SRF+A+PLA L T KGREIL
Sbjct: 929 KGLMKSPNATPENIATWDIKQLALKLTANSMYGCLGFTKSRFYARPLAVLTTFKGREILR 988
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+LN +VIYGDTDS+MI+ NV++ K+G++ K++ NK Y++LE+DID +++
Sbjct: 989 STKELAESLNLQVIYGDTDSVMINANVDNMRDALKVGSEFKNQVNKRYQRLEIDIDNIFR 1048
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA+++ ++ NGK I E+KG+D+ RR++ L+ E ++ +IL +
Sbjct: 1049 RILLQAKKKYAAINMVEV-NGKYIDKMEVKGLDMKRREYCPLSREVSTRILDEILSGED- 1106
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLS 813
T+ S +Q IH ++++I + +P I QL KAP+ + Q+ L
Sbjct: 1107 TEVS----VQRIHAYLREISGKMREQAIPPAKYIILTQLGKAPKEYPNADNMPQVQVALR 1162
Query: 814 RNRRGRRRRR 823
RG+ R+
Sbjct: 1163 ELARGKTLRK 1172
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 89/160 (55%), Gaps = 5/160 (3%)
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFD 283
G++ LFGKV K+ + SC V V NI RK+Y LPR ++ T E V + VY E D
Sbjct: 364 GSLCLFGKVLNKKTGRYVSCFVKVDNILRKLYFLPRKHRVRGGVETTEQVEMMDVYQEVD 423
Query: 284 QIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGT 343
I T+ + K + +KYAF LP +P ++YL++ Y P L G+TFSHVFGT
Sbjct: 424 AIMTKMNVQMHKIKACTRKYAFELPDIPAEAQYLKLLYPYTKPPLELGTKGETFSHVFGT 483
Query: 344 KTSFLENLLLERKIKGPSWLEFPEAEKFPSR-ISWCKYEV 382
TS E +L +KI GP WL +A+ R S C+ EV
Sbjct: 484 NTSLFEQFVLWKKIMGPCWLRIEDADFGALRNASHCRLEV 523
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGD 157
K +KFA F+ L+ G+ YE +YEEV E +Y + V R EDD++ DD G+
Sbjct: 6 KRDKFAEFRALRQ-AGKKKFDTYEVEDAPTLYEEVDEDQYKKIVRARLNEDDFVVDDNGE 64
Query: 158 GYVEDGREIFD 168
GY +DGRE +D
Sbjct: 65 GYADDGREEWD 75
>gi|255565234|ref|XP_002523609.1| DNA polymerase alpha catalytic subunit, putative [Ricinus communis]
gi|223537171|gb|EEF38804.1| DNA polymerase alpha catalytic subunit, putative [Ricinus communis]
Length = 1526
Score = 347 bits (890), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 205/429 (47%), Positives = 273/429 (63%), Gaps = 43/429 (10%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++E I+F + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLHAFH
Sbjct: 776 LIELIEFGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFH 835
Query: 462 EKSYVLPDK----------------QYGKNKKEGEE-----------TGEANKGKGRKKA 494
K Y++PDK G +K EE + E ++GKG+K
Sbjct: 836 AKKYIVPDKNSFHLKKETKMTKRRIHNGVEEKNAEELDTDHANFDNDSPENDRGKGKKGP 895
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLP 554
AY GGLVLEPKKG YDK+++L+DFNSLYPSIIQEYNICFTT+ + L LP
Sbjct: 896 AYVGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTV------EKSTDGLVPRLP 949
Query: 555 EHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGF 614
+ TG+LP +K LVE RR VK+ MK N S + Q DI+Q+ALKLTANSMYGCLGF
Sbjct: 950 SIKT-TGVLPELLKNLVERRRMVKSWMK--NASGLKVQQLDIQQQALKLTANSMYGCLGF 1006
Query: 615 PNSRFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKI 673
NSRF+A+PLA L+T +GREIL +T LV+ NLN EVIYGDTDS+MI + D I
Sbjct: 1007 SNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLEDITKAKAI 1066
Query: 674 GNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVR 733
++ E NK Y+ LE+D+DG+YK MLLLKKKKYAA+ + + +G E KG+D+VR
Sbjct: 1067 AGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKL-QFKDGTPYEVIERKGLDMVR 1125
Query: 734 RDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEIT 793
RDWS L+ E G F ++QIL + S +D +++IH + K++ ++ NG V L IT
Sbjct: 1126 RDWSLLSKELGDFCLAQIL-----SGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYIIT 1180
Query: 794 KQLTKAPEG 802
K LTK PE
Sbjct: 1181 KTLTKPPEA 1189
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 112/204 (54%), Gaps = 28/204 (13%)
Query: 214 MFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEP 272
+ +DA E+I+ GT+YLFGKV K N++ SCC++V+N+ R +Y +P T++
Sbjct: 341 FYIIDAHEEIFGANMGTLYLFGKV--KAGNTYHSCCMVVKNMQRCVYAIPNGSIFHTEDM 398
Query: 273 VSIAQ-------------------VYSEFDQIATQYKILD---FKSRKIEKKYAFNLPGV 310
+ + + Y ++IA Q+ L+ F +++KYAF +
Sbjct: 399 IRLEKDVEESRISPAEFRKKLQDVAYELKNEIANQFLSLNVSSFSMTPVKRKYAFERQDI 458
Query: 311 PDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE 369
P Y L++ YS K P LP+DL G+TFS + GT S LE L++RK+KGPSWL +
Sbjct: 459 PVGENYALKINYSFKEPPLPADLKGETFSALLGTHCSALELFLVKRKVKGPSWLSVSKFS 518
Query: 370 KFPS--RISWCKYEVQCNQMEKIR 391
P+ R+SWCK+E+ + + IR
Sbjct: 519 TCPASQRVSWCKFEITADSPKDIR 542
>gi|358340495|dbj|GAA34876.2| DNA polymerase alpha subunit A [Clonorchis sinensis]
Length = 3307
Score = 347 bits (889), Expect = 3e-92, Method: Composition-based stats.
Identities = 208/479 (43%), Positives = 279/479 (58%), Gaps = 88/479 (18%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ + I F + + +++ +L VLPLA+QIT +CGNVLSRTL GGR+ERNE LLLHAF
Sbjct: 849 VKQLIDFCLSDAHLALRLAHQLQVLPLAMQITCICGNVLSRTLSGGRAERNEALLLHAFT 908
Query: 462 EKSYVLPDKQYGKNK---------------KEGEETGEANKGKGRKKAAYSGGLVLEPKK 506
+ Y++PD + + G+ET A G++K AY+GGLVLEPKK
Sbjct: 909 QHGYIVPDPPTNARRGRGTHAAGQDDWDVVEHGDETQPAAL-TGKRKPAYTGGLVLEPKK 967
Query: 507 GFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDI-------------------- 546
GFYDK+I+L+DFNSLYPSIIQE+NICFTT+ ++ SD
Sbjct: 968 GFYDKYILLLDFNSLYPSIIQEFNICFTTVNRELVTGSDSNPTDSTDVEAPHSETADLDV 1027
Query: 547 ----------------TTLCE------YLPEHQVDTGILPSEIKKLVESRRQVKALMKQP 584
TT+ + LP Q G+LP+EI++LV+SRR+VK L+
Sbjct: 1028 MVASLLATVQGTAGGSTTVTDPRSHQLRLPTAQT-PGLLPAEIRRLVDSRREVKKLIAVA 1086
Query: 585 NLSSD----LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
+ SS+ L Q++ RQ ALKLTANS+YGCLGF SRF A+ LAALVT GR +L+NT+
Sbjct: 1087 SNSSNPDQAQLAQWNTRQAALKLTANSVYGCLGFAASRFCARGLAALVTGLGRAVLMNTR 1146
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
LVEN+N+EVIYGDTDS+M++ N D + IG +++ E NK Y+ LELD DGVY ML
Sbjct: 1147 DLVENMNFEVIYGDTDSIMVNTNSTDLLTALSIGEKVRHEVNKHYRLLELDTDGVYAAML 1206
Query: 701 LLKKKKYAALSISK------------------LSNGKMICSQEIKGVDVVRRDWSQLASE 742
LL KKKYAAL+I L K QE+KG+D+VRRDWS +A
Sbjct: 1207 LLAKKKYAALAIQNPIQWAAAFKAAQAKHQPALPPPKT--KQEMKGLDIVRRDWSAIAVS 1264
Query: 743 AGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
G+ ++ +L + D L+ IH + + + G +PL+ ITK LTKAPE
Sbjct: 1265 VGRRCVAALLSGEPK-----DTILERIHTDLIETAEKVREGKMPLSDFIITKMLTKAPE 1318
Score = 172 bits (435), Expect = 1e-39, Method: Composition-based stats.
Identities = 83/174 (47%), Positives = 117/174 (67%), Gaps = 2/174 (1%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKEN-NSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
++ DA+ED QPG VYLFGK+ + SCC+ V++++R+I+LLPR E
Sbjct: 371 LHFYWFDAYEDSRHQPGVVYLFGKIKDSQRPGKFISCCLRVKDLERRIFLLPRPELTDGA 430
Query: 271 EPVS-IAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALP 329
E S + +VY+EF Q++ ++K+ F+ + K+YAF+L VP SEYLEVRYSA CPALP
Sbjct: 431 ESGSFMKEVYTEFRQVSAEHKVGRFRCKLSTKRYAFDLADVPVESEYLEVRYSASCPALP 490
Query: 330 SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQ 383
+DL G TFSH+FGT TSFLENL+LE +++GP WL A +ISWC+ + +
Sbjct: 491 ADLQGKTFSHIFGTNTSFLENLILELQLRGPCWLVVKNAALVQPQISWCQTDFE 544
Score = 63.9 bits (154), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 126 DENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIEDVPQKKEKHDKRK 185
+E+VY V E EY + V +R EDDWI DD G GY +DGREIFDD+ ED + + +R
Sbjct: 35 EESVYVTVDESEYAKLVQQRLEDDWIVDDDGLGYADDGREIFDDNDED--EAVDDRGRRT 92
Query: 186 KNKNIQNPNAKDDSL 200
K + ++K L
Sbjct: 93 KRSSKTQSHSKKTRL 107
>gi|361131944|gb|EHL03559.1| putative DNA polymerase alpha catalytic subunit [Glarea lozoyensis
74030]
Length = 1354
Score = 346 bits (888), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 191/431 (44%), Positives = 274/431 (63%), Gaps = 19/431 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + +I + ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 668 GLMDYVNHCEADTFFIAALALKVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 727
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKG--RKKAAYSGGLVLEPKKGFYDKFIILMDF 518
H Y+ PDK K +++ EE + G +KK Y GGLV EP+KG YDKF+++MDF
Sbjct: 728 HRNKYICPDKAVFKGRQQIEEENDEEGGAADVKKKDKYKGGLVFEPEKGLYDKFVLVMDF 787
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVD--TGILPSEIKKLVESRRQ 576
NSLYPSIIQEYNICFTT+ L D + E +PE D GILP I LV RRQ
Sbjct: 788 NSLYPSIIQEYNICFTTVDRTKLSDDE-----EQVPEVPEDQELGILPKLIATLVSRRRQ 842
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK+LMK + +++ L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 843 VKSLMKGKSATAEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREIL 902
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
+TK L E+ + +VIYGDTDS+MI+ NV++ D K+GN+ K N YK LE+DID V+
Sbjct: 903 RSTKELAESNSLQVIYGDTDSVMINANVDNVDDALKVGNEFKKAVNDRYKLLEIDIDNVF 962
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
+ +LL KKKYAA+++ ++ +GK + E+KG+D+ RR++ L+ E V S++L+E
Sbjct: 963 RRILLQAKKKYAAINLVQI-DGKFVDKMEVKGLDMKRREYCNLSKE----VSSKLLNEIL 1017
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRL 812
D S D + IHE++++I T + +P I +L KAP+ + Q+ L
Sbjct: 1018 SGDES-DVVITRIHEYLREIATKMREDEIPTQKYTIYTKLGKAPKDYPNADSMPQVQVAL 1076
Query: 813 SRNRRGRRRRR 823
RG+ R+
Sbjct: 1077 REMSRGKTVRK 1087
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 12/169 (7%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLP---RSEHLK-TK 270
FF + ++ G++ LFGKV K+N +H SC V V N+ RK++ LP R +++K T
Sbjct: 340 FFWTDYTEVN---GSLCLFGKVKNKKNGAHVSCFVKVDNVLRKLFFLPREYRQQNMKDTD 396
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRY----SAKCP 326
E V + +VY E D++ + ++ K + +KYAF VP EYL++ Y S
Sbjct: 397 EEVGMKEVYEEVDEMMGRMRVGMHKMKPCTRKYAFEHEDVPKEGEYLKLLYPYSNSDSMD 456
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKI-KGPSWLEFPEAEKFPSR 374
A P L V K + E L + +I S + EK P R
Sbjct: 457 APPLTLMSIAMRTVLNVKDNKQEILAISARIYHDISLTDTTSPEKLPCR 505
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 104 AAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVED 162
A F +L+ G K YE E++YEEV E Y + V +R +DD++ DD G+GY +D
Sbjct: 10 AKFAELRANVQSGKKRTYEVEQQEDLYEEVDEDGYKKVVRERLNQDDFVIDDNGEGYADD 69
Query: 163 GREIFD 168
GRE +D
Sbjct: 70 GREEWD 75
>gi|300681493|emb|CBH32589.1| DNA polymerase alpha catalytic subunit,putative,expressed [Triticum
aestivum]
Length = 1516
Score = 345 bits (886), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 200/412 (48%), Positives = 272/412 (66%), Gaps = 44/412 (10%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLH+FH K +++PDK +NK
Sbjct: 788 LELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKFIIPDKFAARNK 847
Query: 477 K------------EG-------------EETGEANKGKGRKKAAYSGGLVLEPKKGFYDK 511
+ EG +E ++GK RK +Y+GGLVLEPKKG YDK
Sbjct: 848 ELNSAKRKLNADTEGGNAADGAADPSIDDEVHNGDQGKARKGPSYAGGLVLEPKKGLYDK 907
Query: 512 FIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+I+L+DFNSLYPSIIQE+NICFTT V D ++ LP + TG+LP +K LV
Sbjct: 908 YILLLDFNSLYPSIIQEFNICFTT--VERSSDGNLPN----LPNSKA-TGVLPELLKSLV 960
Query: 572 ESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
E RR VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF NSRFFA+PLA L+T
Sbjct: 961 ERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITL 1017
Query: 631 KGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
+GREIL NT LV+ NLN EVIYGDTDS+MI ++D I ++ E NK Y+ LE
Sbjct: 1018 QGREILQNTVDLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKAIAGKVIQEVNKKYRCLE 1077
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+D+DGVYK MLLLKKKKYAA+ ++ +G + + E KG+D+VRRDWS L+ E G F ++
Sbjct: 1078 IDLDGVYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDWSMLSKEIGDFCLN 1135
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL + + DD +++IH + +++ + +G + L ITK LTKAPE
Sbjct: 1136 QIL-----SGGTCDDVIESIHNSLVQVQAQMKSGQIELEKYIITKSLTKAPE 1182
Score = 110 bits (276), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 102/205 (49%), Gaps = 27/205 (13%)
Query: 211 VFRMFFLDAFEDIYK-QPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL-- 267
+ LDA+E+ + GTVYLFGKV + + SCCV+V+N+ R IY +P S
Sbjct: 337 ALPFYVLDAYEEPFGINSGTVYLFGKVVIGKR--FHSCCVVVKNMQRCIYAIPSSSVFPR 394
Query: 268 ------------KTKEPVSIAQVYS-------EFDQIATQYKILDFKSRKIEKKYAFNLP 308
P A ++ E + + + +F +++ YAF
Sbjct: 395 DTISRIEKNSTSSDASPSLRATLHELSSGLKIEVAEKLSDLNVSNFVMTPVKRNYAFERT 454
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
VP +Y L++ Y K PA+P+DL G+ F + GT S LE L++RKIKGPSWL +
Sbjct: 455 DVPIGEQYVLKINYPYKDPAVPADLRGEHFHALLGTNNSALELFLIKRKIKGPSWLSISK 514
Query: 368 AEKFPS--RISWCKYEVQCNQMEKI 390
PS R+SWCK+EV + + I
Sbjct: 515 FVACPSTQRVSWCKFEVTVDSPKDI 539
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 104 AAFQKLKDLKGQGVKHK--YEFTADENVYEEVSEKEYTERVLKRQEDD--WIDDDGGDGY 159
AA ++L+ ++G G + + ++ +Y+ V+E++Y V +R++D +I DD G GY
Sbjct: 4 AALERLRAIRGGGARSAAAVQVRMEDPIYDTVAEEDYAALVARRRKDAGAFIIDDDGLGY 63
Query: 160 VEDGRE 165
V+DGRE
Sbjct: 64 VDDGRE 69
>gi|392565173|gb|EIW58350.1| hypothetical protein TRAVEDRAFT_58647 [Trametes versicolor FP-101664
SS1]
Length = 1457
Score = 345 bits (884), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 183/408 (44%), Positives = 263/408 (64%), Gaps = 19/408 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ L + Y + + ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 752 LLTFVRHCELDAHYQMALAAKVQLLPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFH 811
Query: 462 EKSYVLPDKQYGK-------NKKEGEET-GEANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
Y+ PDK YGK +KE E+ G K K+ Y GGLV EPK+G +DK+I
Sbjct: 812 RLKYLCPDKLYGKKAATAVKAEKEDEDAEGAGTKATKGKRDKYKGGLVFEPKRGLWDKYI 871
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
++MDFNSLYPSIIQEYNI FTT V ++D D P +V G+LP I LV
Sbjct: 872 LVMDFNSLYPSIIQEYNIDFTT--VEAVEDEDGEEKIPEPPSSEVALGVLPRLIATLVNR 929
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RRQVK+LMK ++ L+Q+DI+Q ALKLTANSMYGCLGF SRF+A+PLAAL T KGR
Sbjct: 930 RRQVKSLMKDKKATAGQLLQWDIKQMALKLTANSMYGCLGFEYSRFYARPLAALTTFKGR 989
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL +T+ L E++ +V+YGDTDS+ ++ NV D KI + K N YK LE+D+D
Sbjct: 990 EILTHTRELAESMQLDVVYGDTDSVFVNSNVTDLAEALKISAEFKKAVNDRYKLLEIDLD 1049
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
G+++ +LLL+KKKYAA+ K+ +G S E+KG+D+ RR++ L+ +FV+ QIL
Sbjct: 1050 GIFQRLLLLQKKKYAAV---KVEDGTRT-STEVKGLDMKRREYCALSKTVSQFVLEQILS 1105
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + ++ ++NIHE++ + ++ G + L + K+L K PE
Sbjct: 1106 GE-----ATENVVENIHEYLSTVSENVRAGKIKLDEFIVFKRLGKNPE 1148
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 15/190 (7%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR-------- 263
R ++LD E G +Y GK K+ + S V V+N+ R +++LPR
Sbjct: 346 LRFYWLDYLE----HDGKLYFIGKTQDKKTKTWVSISVTVENLQRNLFVLPRERRMEEDE 401
Query: 264 --SEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVR 320
E +T + + ++YS+FD++ + I FK + +++KYAF VP + ++L+V
Sbjct: 402 DTGEMYETDQVPELPEIYSDFDRLRRKAGIKAFKGKFVKRKYAFGEKDVPREEKQWLKVV 461
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
Y P LP+ S FS +FGT TS E L+L+RKI GP WL+ E +SWCK
Sbjct: 462 YGFNEPQLPNTASSPNFSRIFGTNTSAFELLVLKRKIMGPCWLQVKHPEIDNKGVSWCKV 521
Query: 381 EVQCNQMEKI 390
E + + I
Sbjct: 522 EATVSDPKDI 531
>gi|297797665|ref|XP_002866717.1| hypothetical protein ARALYDRAFT_332862 [Arabidopsis lyrata subsp.
lyrata]
gi|297312552|gb|EFH42976.1| hypothetical protein ARALYDRAFT_332862 [Arabidopsis lyrata subsp.
lyrata]
Length = 1492
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 203/444 (45%), Positives = 273/444 (61%), Gaps = 40/444 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+VE I+ + +++M L+VLPL +Q+TN+ GN+ +TL G RS+R E+ LLH FH
Sbjct: 782 LVELIECGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARSQRIEYYLLHTFH 841
Query: 462 EKSYVLPDK---------------QYGKNKKEGEET-------GEANKG-KGRKKAAYSG 498
K Y+LPDK YG + EE + +KG K +K AY+G
Sbjct: 842 SKKYILPDKISQRMKEIKSSKRRMNYGPEDRNVEELDADLALENDPSKGSKTKKGPAYAG 901
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPK+G YDK+++L+DFNSLYPSIIQEYNICFTT+P +D LP Q
Sbjct: 902 GLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTMPRS--EDG-----VPRLPSSQT 954
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSR 618
G+LP ++ LV R+ VK MK+ + + DIRQ ALKLTANSMYGCLGFPNSR
Sbjct: 955 -PGVLPKLMEHLVSIRKSVKLKMKKE--TGLKYWELDIRQHALKLTANSMYGCLGFPNSR 1011
Query: 619 FFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQI 677
F+A+PLA L+T +GREIL T LV+N LN EVIYGDTDS+MI ++D + V I +++
Sbjct: 1012 FYAKPLAELITLQGREILQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVNAIKSKV 1071
Query: 678 KSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWS 737
E NK Y+ L++D DG+YK MLLL+KKKYAA+ + + +GK E KGVD+VRRDWS
Sbjct: 1072 IQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKL-EFKDGKPCEDIERKGVDMVRRDWS 1130
Query: 738 QLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLT 797
L+ E G +S+IL S +D ++ +H + KI+ ++ NG V L ITK LT
Sbjct: 1131 LLSKEIGDLCLSKIL-----YGGSCEDVVEAVHNELMKIKEEMRNGQVALEKYVITKTLT 1185
Query: 798 KAPEGGKVCITQIRLSRNRRGRRR 821
K P +Q + R R+R
Sbjct: 1186 KPPAAYPDSKSQPHVQVALRMRQR 1209
Score = 119 bits (298), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 116/226 (51%), Gaps = 31/226 (13%)
Query: 212 FRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
R + LDA+E+ + GT+YLFGKV K +++ SCCV+V+NI R +Y +P +
Sbjct: 347 LRFYILDAYEEAFGASMGTIYLFGKV--KMGDTYKSCCVVVKNIQRCVYAIPNDSIFPSH 404
Query: 271 EPVSIAQ----------------------VYSEFDQIATQYKILDFKSRKIEKKYAFNLP 308
E + + Q + +E Q Q + +F +++ YAF P
Sbjct: 405 ELIMLEQEVKDSQLSPESFRGKLHEMASKLKNEIAQELLQLNVSNFSMAPVKRNYAFERP 464
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE-FP 366
VP +Y +++ Y K LP DL G++F + G+ TS LE+ +L+RKI GPSWL+ F
Sbjct: 465 DVPTGEQYVMKINYPFKDRPLPEDLKGESFCALLGSHTSALEHFILKRKIMGPSWLKIFN 524
Query: 367 EAEKFPSR-ISWCKYEVQCNQMEKIR---SKQGLIYLIGIVEFIKF 408
+ PS +SWCK+EV + I S++ +++ +V I
Sbjct: 525 FSTCSPSVGVSWCKFEVTVESPKDITVLVSEEKMVHPPAVVTAINL 570
>gi|449463959|ref|XP_004149697.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Cucumis
sativus]
Length = 1547
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 204/426 (47%), Positives = 276/426 (64%), Gaps = 40/426 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ I++ + +++M L+VLPL Q+TN+ GN+ R+L G R++R E+LLLHAFH
Sbjct: 801 LMNLIEYGETDAWLSLELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFH 860
Query: 462 EKSYVLPDKQ--YGKNKK---------------------EGE-ETGEANKGKGRKKAAYS 497
K Y++PDK Y K+KK +G E + GKG+K +Y
Sbjct: 861 AKKYIVPDKNSSYVKDKKIVKKRTNHGSEEKNVDQFDLDDGNVEAPNTDSGKGKKGPSYL 920
Query: 498 GGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQ 557
GGLVLEPK+G YDK+++L+DFNSLYPSIIQEYNICFTT+ + + LP +
Sbjct: 921 GGLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTV------ERSPDGVIPPLPSSR 974
Query: 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS 617
V TG+LP +K LV+ RR VK+ MK N S L Q DI+Q+ALKLTANSMYGCLGF NS
Sbjct: 975 V-TGVLPELLKNLVQRRRMVKSWMK--NASGLKLQQLDIQQQALKLTANSMYGCLGFSNS 1031
Query: 618 RFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
RF+A+PLA L+T++GREIL +T LV+ NL+ EVIYGDTDS+MI ++D V I +
Sbjct: 1032 RFYAKPLAELITSQGREILQSTVDLVKNNLSLEVIYGDTDSIMIHSGLDDVGKVKAIAGK 1091
Query: 677 IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDW 736
+ E NK YK LE+D+DG+YK MLLLKKKKYAA+ + + +G E KG+D+VRRDW
Sbjct: 1092 VIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKL-QFKDGMPYEVIERKGLDMVRRDW 1150
Query: 737 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
S L+ E G F ++QIL + S +D +++IH+ + KI+ D+ G V L ITK L
Sbjct: 1151 SLLSKELGDFCLNQIL-----SGGSCEDVVESIHDSLMKIQEDMRKGQVALEKYIITKTL 1205
Query: 797 TKAPEG 802
TK PE
Sbjct: 1206 TKPPEA 1211
Score = 118 bits (296), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 113/214 (52%), Gaps = 28/214 (13%)
Query: 205 DHENKKVFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR 263
D + + +DA E+++ GTVYLFGKV K ++ SCCV+V+N+ R IY +P
Sbjct: 357 DTDTDGSLPFYIVDAHEELFGANMGTVYLFGKV--KAGDTFHSCCVVVKNMQRCIYAIPS 414
Query: 264 SEHLKTKE-----------PVSIAQVYSEFDQIATQYK------ILD-----FKSRKIEK 301
+ L + E +S A + ++ ++ K +LD F +++
Sbjct: 415 ASFLHSDEMLELQKDAEESQLSPADLRAKLQEVTAGLKNEMAKQLLDLNVSTFSMTPVKR 474
Query: 302 KYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGP 360
KYAF +P Y +++ Y K P LP+DL G+ F + GT S LE LL++RKIKGP
Sbjct: 475 KYAFERQDIPAGENYVIKINYPFKHPPLPADLKGELFCALLGTHRSALELLLIKRKIKGP 534
Query: 361 SWLEFPEAEKFPS--RISWCKYEVQCNQMEKIRS 392
SWL + P+ R+SWCK+EV + + +++
Sbjct: 535 SWLSISKFSSRPASQRVSWCKFEVIVDSPKDVQT 568
>gi|299745348|ref|XP_001831651.2| DNA polymerase alpha catalytic subunit [Coprinopsis cinerea
okayama7#130]
gi|298406546|gb|EAU90184.2| DNA polymerase alpha catalytic subunit [Coprinopsis cinerea
okayama7#130]
Length = 1430
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 183/403 (45%), Positives = 260/403 (64%), Gaps = 15/403 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ + + Y + I ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 731 MMTFVQHCEMDAHYQMAIATKVQILPLTRQLTNLAGNAWNKTLNGGRAERNEYILLHEFH 790
Query: 462 EKSYVLPDKQYGKN---KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
Y+ PDK YGK K+ +E G+A K K K+ Y GGLV EPK+G +D +I++MDF
Sbjct: 791 RLKYICPDKTYGKKTVPKETADEEGDAPKSKA-KRDKYKGGLVFEPKRGLWDSYILVMDF 849
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNI FTT+ + ++ + + P D G+LP I LV RRQVK
Sbjct: 850 NSLYPSIIQEYNIDFTTVDPPEVDENGEEKIPD--PPSDKDKGVLPRLIATLVNRRRQVK 907
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK + L+QYDI+Q+ALKLTANSMYGCLGF SRF+A+PLAAL T KGREIL
Sbjct: 908 SLMKDRTATPAKLLQYDIKQQALKLTANSMYGCLGFEYSRFYARPLAALTTFKGREILTR 967
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
T+ L E+LN +VIYGDTDS+ ++ VND+ K K N Y LE+D+D V++
Sbjct: 968 TRELAESLNLDVIYGDTDSVFVNSGVNDFAEALKTSAIFKKAVNDQYNLLEIDLDCVFQR 1027
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LLL+KKKYAAL + S S E+KG+D+ RR++ L+ E ++V+++IL
Sbjct: 1028 LLLLQKKKYAALKVEDGSR----TSVEVKGLDMKRREYCALSKEVSQYVLARILSGD--- 1080
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S +D ++ IHE++ + ++ +G V L + K+L K PE
Sbjct: 1081 --STEDVVETIHEYLGTMSQNVRSGQVKLEDFIVFKRLGKNPE 1121
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 15/182 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR-------- 263
R F++D E G +YL GK+ K++++ SCCV + ++R +Y LPR
Sbjct: 317 LRFFWIDYLE----HEGRLYLVGKLKDKKSDTWVSCCVTIDGLERNLYALPREKRIDFDE 372
Query: 264 --SEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVR 320
E +T E + V +F+Q+ KI +K+R +++ YAF VP S +L++
Sbjct: 373 DTGEVTETDEIPTDEDVLDDFEQLRQNMKIKSYKTRFVKRNYAFGEKDVPRGESRWLKIV 432
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
Y P +P + SH+FGT TS E +L+RKI GP WLE +SWC++
Sbjct: 433 YPFTQPQIPMGVWSPNISHIFGTNTSAFEIFVLKRKIMGPCWLEIKNPVVEFKGVSWCRF 492
Query: 381 EV 382
E
Sbjct: 493 EA 494
>gi|30984123|dbj|BAC76767.1| DNA polymerase alpha catalytic subunit [Coprinopsis cinerea]
Length = 1426
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 183/403 (45%), Positives = 260/403 (64%), Gaps = 15/403 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ + + Y + I ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 727 MMTFVQHCEMDAHYQMAIATKVQILPLTRQLTNLAGNAWNKTLNGGRAERNEYILLHEFH 786
Query: 462 EKSYVLPDKQYGKN---KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
Y+ PDK YGK K+ +E G+A K K K+ Y GGLV EPK+G +D +I++MDF
Sbjct: 787 RLKYICPDKTYGKKTVPKETADEEGDAPKSKA-KRDKYKGGLVFEPKRGLWDSYILVMDF 845
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNI FTT+ + ++ + + P D G+LP I LV RRQVK
Sbjct: 846 NSLYPSIIQEYNIDFTTVDPPEVDENGEEKIPD--PPSDKDKGVLPRLIATLVNRRRQVK 903
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK + L+QYDI+Q+ALKLTANSMYGCLGF SRF+A+PLAAL T KGREIL
Sbjct: 904 SLMKDRTATPAKLLQYDIKQQALKLTANSMYGCLGFEYSRFYARPLAALTTFKGREILTR 963
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
T+ L E+LN +VIYGDTDS+ ++ VND+ K K N Y LE+D+D V++
Sbjct: 964 TRELAESLNLDVIYGDTDSVFVNSGVNDFAEALKTSAIFKKAVNDQYNLLEIDLDCVFQR 1023
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LLL+KKKYAAL + S S E+KG+D+ RR++ L+ E ++V+++IL
Sbjct: 1024 LLLLQKKKYAALKVEDGSR----TSVEVKGLDMKRREYCALSKEVSQYVLARILSGD--- 1076
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S +D ++ IHE++ + ++ +G V L + K+L K PE
Sbjct: 1077 --STEDVVETIHEYLGTMSQNVRSGQVKLEDFIVFKRLGKNPE 1117
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 16/183 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR-------- 263
R F++D E G +YL GK+ K++++ SCCV + ++R +Y LPR
Sbjct: 323 LRFFWIDYLE----HEGRLYLVGKLKDKKSDTWVSCCVTIDGLERNLYALPREKRIDFDE 378
Query: 264 --SEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVR 320
E +T E + V +F+Q+ KI +K+R +++ YAF VP + +L++
Sbjct: 379 DTGEVTETDEIPTDEDVLDDFEQLRQNMKIKSYKTRFVKRNYAFGEKDVPRGETGWLKIV 438
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
Y + P P + SH+FGT TS E +L+RKI GP WLE +SWC++
Sbjct: 439 YHSLNPD-PMGVWSPNISHIFGTNTSAFEIFVLKRKIMGPCWLEIKNPVVEFKGVSWCRF 497
Query: 381 EVQ 383
E
Sbjct: 498 EAS 500
>gi|297795609|ref|XP_002865689.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297311524|gb|EFH41948.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1550
Score = 344 bits (883), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 206/439 (46%), Positives = 280/439 (63%), Gaps = 32/439 (7%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+VE I+ + +++M LNVLPL +Q+TN+ GN+ +TL GG ++RNE+ LLH FH
Sbjct: 851 LVELIECGETDAWLSMELMFHLNVLPLTLQLTNISGNLWGKTLQGGSAQRNEYYLLHTFH 910
Query: 462 EKSYVLPDK--QYGKNKK----------EGEETGEANKG-KGRKKAAYSGGLVLEPKKGF 508
K Y+LPDK Q+ K +K E + +KG K +K AY+GGLVLEPKKG
Sbjct: 911 SKKYILPDKISQHMKERKSSKRRINHGPEDHNVDDPSKGNKTKKGPAYAGGLVLEPKKGL 970
Query: 509 YDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
YDK+++L+DF+SLYPSIIQEYNICFTTIP +D LP Q GILP ++
Sbjct: 971 YDKYVLLLDFSSLYPSIIQEYNICFTTIPRS--EDG-----VPRLPSSQT-PGILPKLME 1022
Query: 569 KLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
LV R+ VK MK+ +DL + DIRQKALKLTANS+YG LGF NSRF+A+PLA L
Sbjct: 1023 HLVSIRKCVKLKMKK---ETDLKCRELDIRQKALKLTANSLYGYLGFSNSRFYAKPLAEL 1079
Query: 628 VTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK 686
+T +GREIL T LV+N LN EVIYGDTDS+MI ++D V IG ++ E NK Y+
Sbjct: 1080 ITLQGREILQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIKEVKAIGAKVIQEVNKKYR 1139
Query: 687 QLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746
L++++D +YK MLLL+KKKYAA+ + + +GK+ E KGVD+VRRDWS L+ E G
Sbjct: 1140 CLKIELDCIYKRMLLLRKKKYAAIKL-QFKDGKICEDIERKGVDMVRRDWSLLSKEIGDL 1198
Query: 747 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVC 806
+++IL S +D ++ IH + KI+ ++ NG V L ITK L+K+PE
Sbjct: 1199 CLAKIL-----YGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYVITKALSKSPEAYPDS 1253
Query: 807 ITQIRLSRNRRGRRRRRRK 825
+Q + R R+R +K
Sbjct: 1254 KSQPHVQVALRMRQRGYKK 1272
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 101/202 (50%), Gaps = 24/202 (11%)
Query: 205 DHENKKVFRMFFLDAFEDIYKQP-GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR 263
D E + LDA E + GT+YL KV VK+ +++ SCCV+V NI R +Y +P
Sbjct: 414 DLEADGSLLFYILDACEKPFDASMGTIYLLRKVKVKKGDTYKSCCVVVNNIQRCVYAIPN 473
Query: 264 SEHLKTKEPVSIAQ----------------------VYSEFDQIATQYKILDFKSRKIEK 301
+ E +++ Q + E Q Q + ++ +++
Sbjct: 474 DSIFPSHELMTLEQEVKESRLSPESFRGKLHEMASKLKKEISQQLLQLNVSNYSMAIVKR 533
Query: 302 KYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGP 360
YAF+ P VP +Y L++ YS K P LP DL G++F V G+ TS LE +L+RKI GP
Sbjct: 534 NYAFDRPDVPTGQQYVLKINYSFKDPPLPEDLKGESFCTVLGSHTSALELFILKRKIMGP 593
Query: 361 SWLEFPEAEKFPSRISWCKYEV 382
SWL+ R+SWCK EV
Sbjct: 594 SWLKISVFSPPSQRVSWCKCEV 615
>gi|340905438|gb|EGS17806.1| DNA polymerase alpha catalytic subunit-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 1495
Score = 344 bits (882), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 187/429 (43%), Positives = 273/429 (63%), Gaps = 14/429 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + +I + +LPL +TN+ GN +RTL G R+ERNEF+LLH F
Sbjct: 755 GLMDYISHAETDTYFIAALALRTQILPLTKILTNLAGNSWARTLTGTRAERNEFILLHEF 814
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGG--LVLEPKKGFYDKFIILMDF 518
+ Y+LPDK K + +E + + G K LV EP+KG YDK++++MDF
Sbjct: 815 KKAGYILPDKIPAKGRARVDEENQDDDGGEGGKKKDKYKGGLVFEPEKGLYDKYVLVMDF 874
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNICFTT+ L D + +P D GILP + KLV+ RR+VK
Sbjct: 875 NSLYPSIIQEYNICFTTVDRSNLSDDE--DAVPAVPGKDRDQGILPRLLGKLVDRRREVK 932
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
LMK P + + L +DIRQ ALKLTANSMYGCLG+ SRF+A+PLA L+T KGREIL +
Sbjct: 933 KLMKTPRATPEQLATWDIRQLALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREILRS 992
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK+L E+++ +VIYGDTDS+MI+ NV++ + ++GN++K E NKLYK+LE+DID V++
Sbjct: 993 TKALAESMSLQVIYGDTDSVMINANVDNVLAAIEVGNKLKQEVNKLYKRLEIDIDNVFRR 1052
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA+++ + NG+ + E+KG+D+ RR++ L+ E K ++ +IL T
Sbjct: 1053 ILLQAKKKYAAINMVE-ENGRWVEKMEVKGLDMRRREYCPLSREVSKRILDEILSGDD-T 1110
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLSR 814
+ S +Q +H+++++I + G +PL I QL KAP+ + Q+ L
Sbjct: 1111 EVS----VQRVHKYLREISAKMREGAIPLNKYIILTQLGKAPKEYPNADSMPQVQVALRE 1166
Query: 815 NRRGRRRRR 823
RG+ RR
Sbjct: 1167 MARGKVMRR 1175
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/204 (36%), Positives = 112/204 (54%), Gaps = 17/204 (8%)
Query: 203 ATDHENKKVFRMFFLDAFE----------DIYKQPGTVYLFGKVFVKENNSHSSCCVIVQ 252
++ E K ++ + DA E D + G++ LFGKV K+ N + SC V V
Sbjct: 329 SSPTEAKTFGKIHYTDAIEEDGSLHFYWTDYTELNGSLCLFGKVLNKKKNHYVSCFVKVD 388
Query: 253 NIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLP 308
NI RK+Y LPR ++ T EPV + VY+E D + T+ + K + +KKYAF LP
Sbjct: 389 NILRKLYFLPRKYRMRNGVETDEPVEMMDVYNEVDALMTKLGVDMHKIKPRKKKYAFELP 448
Query: 309 GVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
G+P +EYL++ Y P + +G+TFSHVFGT T+ E +L R I GP WL+ +A
Sbjct: 449 GIPSEAEYLKLMYPYTKPQIELGKTGETFSHVFGTNTALFEQFVLWRNIMGPCWLKIEDA 508
Query: 369 EKFPS--RISWCKYEVQCNQMEKI 390
+ F + S C+ EV ++ + I
Sbjct: 509 D-FGALKNASHCRLEVLVSRPDSI 531
Score = 55.1 bits (131), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGG 156
+K NKFA + L+ G+ V Y+ E++YEEV E +Y + V R +DD++ DD G
Sbjct: 5 NKRNKFAELRALRQ-AGKKVFDTYQVAEVEDLYEEVDENQYKKIVRARLNQDDFVVDDNG 63
Query: 157 DGYVEDGREIFD 168
+GYV+DGRE +D
Sbjct: 64 EGYVDDGREEWD 75
>gi|397638381|gb|EJK73045.1| hypothetical protein THAOC_05357 [Thalassiosira oceanica]
Length = 1023
Score = 343 bits (881), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 184/385 (47%), Positives = 252/385 (65%), Gaps = 26/385 (6%)
Query: 431 QITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKG 490
Q+TN+ GN+ + T+ G R++R+E+LLLH FH Y+ P+K K ++E E G
Sbjct: 303 QLTNIAGNLWNATIKGNRAQRSEYLLLHEFHRLKYIKPEKITAKQRREDAEEAGGKAAGG 362
Query: 491 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT--- 547
+ K Y+GGLVL+PKKG YD FI+L+DFNSLYPS+IQEYN+CFTT+ +D DI
Sbjct: 363 KSKKGYAGGLVLDPKKGLYDSFILLLDFNSLYPSLIQEYNLCFTTM--DWAKDKDIADEA 420
Query: 548 ----TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKL 603
LP+ +D G+LP IK LVE RR VK MK +D + +IRQ ALKL
Sbjct: 421 GAQENQLPSLPDESLDRGVLPRVIKSLVERRRNVKKFMKS-EKDADKKEELNIRQLALKL 479
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISC 662
TANSMYGCLGF NSRF+A+P+AALVTA GR+ L T + + + +VIYGDTDS+MI+
Sbjct: 480 TANSMYGCLGFQNSRFYARPIAALVTAMGRQTLQRTVDITQTTIGLDVIYGDTDSIMINT 539
Query: 663 NVND---YDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK-LSNG 718
+ D Y +V ++GN++K E N+LYK LEL+IDG+++ MLLLKKKKYAAL+I+ G
Sbjct: 540 RITDLEEYSTVLELGNKVKREVNRLYKTLELEIDGIFRSMLLLKKKKYAALTITTDGPGG 599
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR---LQNIHEHMKK 775
K +E+KG+D+VRRDW + ++GK+VI QIL S +DR + NIH+H++
Sbjct: 600 KFKFDKELKGLDLVRRDWCLQSKDSGKYVIDQIL--------SGEDRELIVSNIHDHLEN 651
Query: 776 IRTDLDNGFVPLTLLEITKQLTKAP 800
+ + +G + L ITK L K P
Sbjct: 652 VAKKMRSGELSLDKYVITKGLNKHP 676
>gi|156048094|ref|XP_001590014.1| hypothetical protein SS1G_08778 [Sclerotinia sclerotiorum 1980]
gi|154693175|gb|EDN92913.1| hypothetical protein SS1G_08778 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1458
Score = 343 bits (879), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 185/403 (45%), Positives = 263/403 (65%), Gaps = 14/403 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + +I + ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 752 GLMDYVSHCEADTYFIAALALKVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 811
Query: 461 HEKSYVLPDKQYGKNKKEGEE-TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
H Y+ PDK K K++ EE + G +KK Y GGLV EP+KG YDKF+++MDFN
Sbjct: 812 HRNKYICPDKAVFKGKQQVEEENADEESGDVKKKDKYKGGLVFEPEKGLYDKFVLVMDFN 871
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLVESRRQV 577
SLYPSIIQE+NICFTT+ L D + + +PE D GILP I LV RRQV
Sbjct: 872 SLYPSIIQEFNICFTTVDRLNLSDDE-----DRVPEVPTDQEQGILPKLIATLVSRRRQV 926
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K+LMK + +S+ L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 927 KSLMKDKHATSEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILR 986
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ + +VIYGDTDS+MI+ NV++ +GN K N YK LE+DID V++
Sbjct: 987 STKDLAESKSLQVIYGDTDSVMINANVDNIQDALAVGNDFKRSVNDRYKLLEIDIDNVFR 1046
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA+++ ++ +GK + E+KG+D+ RR++ L+ E V SQ+L+E
Sbjct: 1047 RILLQAKKKYAAINLVQV-DGKFVDKMEVKGLDMKRREYCNLSKE----VSSQLLNEILS 1101
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
D S + + IH+++++I T + G VP+ I +L KAP
Sbjct: 1102 GDDS-EAVITRIHDYLREISTKMREGNVPVQKYTIYTKLGKAP 1143
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 98/186 (52%), Gaps = 12/186 (6%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
MF+ D E G++ LFGKV K+ + SC + V NI RK++ LPR +
Sbjct: 350 LHMFWTDYTE----INGSLCLFGKVKNKKTGNFFSCFLKVDNILRKLFFLPRQYRKRHGR 405
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T + V + VY E D + T+ + K + +KYAF LP +P EYL++ Y A
Sbjct: 406 DTTDEVDMKDVYEEVDDMMTKMNVGMHKIKPCTRKYAFELPDIPKEGEYLKLLYPYSKSA 465
Query: 328 LPSD-LSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQC 384
L +D SG TFSHVFG+ T E +L + I GP WL+ +A+ F + S CK EVQ
Sbjct: 466 LHADQHSGSTFSHVFGSNTPLFEQFVLWKNIMGPCWLKIEDAD-FGALKNASHCKLEVQV 524
Query: 385 NQMEKI 390
++ I
Sbjct: 525 SKPNLI 530
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A F +L+ L+ G K YE +E++YEEV E+ Y + V R +DD++ DD G+GY
Sbjct: 9 AKFAELRALRESGKKRLDTYEVHQEEDLYEEVDEEGYKKVVRNRLNQDDFVIDDNGEGYA 68
Query: 161 EDGREIFDDD 170
+DGRE +D D
Sbjct: 69 DDGREDWDRD 78
>gi|440636669|gb|ELR06588.1| DNA polymerase alpha subunit A [Geomyces destructans 20631-21]
Length = 1445
Score = 342 bits (878), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 187/429 (43%), Positives = 272/429 (63%), Gaps = 17/429 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+V +I + +I + ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 740 GLVAYIGHCEADTYFIAALALKVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 799
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
H Y++PDK K + + E+ + +G +KK Y GGLV EP+KG YDKF+++MDFNS
Sbjct: 800 HRNKYIVPDKAPFKGRPKTEQQDQDEEGDVKKKDKYKGGLVFEPEKGLYDKFVLVMDFNS 859
Query: 521 LYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLVESRRQVK 578
LYPSIIQEYNICFTT+ L D + E +PE VD GILP I LV RRQVK
Sbjct: 860 LYPSIIQEYNICFTTVDRTTLSDDE-----EKVPEVPVDQDQGILPKLIATLVGRRRQVK 914
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK + +S+ L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +
Sbjct: 915 SLMKDRSATSEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRS 974
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK L E+ + +VIYGDTDS+MI+ NV++ FK+G++ K N YK LE+DID V++
Sbjct: 975 TKELAESKSLQVIYGDTDSVMINANVDNVTDAFKVGHEFKRAVNDRYKLLEIDIDHVFRR 1034
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA+++ ++ +GK I E+KG+D+ RR++ L+ E ++++IL +
Sbjct: 1035 ILLQAKKKYAAINLLEV-DGKFIEKMEVKGLDMKRREYCALSKEVSSKLLNEILSGE--- 1090
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLSR 814
+ + IH+++++I + +PL I +L K P+ + Q+ L
Sbjct: 1091 --ETEIVITRIHDYLREISGKMREDLIPLQKYTIYTKLGKNPKDYPNADSMPQVQVALRE 1148
Query: 815 NRRGRRRRR 823
RG+ R+
Sbjct: 1149 LARGKTVRK 1157
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 102/177 (57%), Gaps = 9/177 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
MF+ D + +++ G++ LFGKV K+ + SC + V NI RK++ LPR K
Sbjct: 337 LNMFWTD-YTEVH---GSLCLFGKVKNKKTGEYVSCFLKVDNILRKVFFLPRDNLYKHGR 392
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D I T+ K+ K + +KYAF L VP+ EYL++ Y PA
Sbjct: 393 ETSEEVGMEDVYKEVDSIMTRMKVGMHKIKPCSRKYAFELEDVPNEGEYLKLLYPYNKPA 452
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQ 383
LP DL+GDTFSH FGT TS E +L + + GP WL+ +A+ F + S CK EVQ
Sbjct: 453 LPIDLTGDTFSHTFGTNTSIFEQFVLWKNVMGPCWLKIEDADFTFLNNASHCKLEVQ 509
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDD 153
+ K+ + + +L+ L+ G K YE +E++YEEV E Y + + R +DD++ D
Sbjct: 1 MSKSARSSKLAELRALRESGKKRLDTYEVHQEEDLYEEVDEDGYKKVIRDRLNQDDFVID 60
Query: 154 DGGDGYVEDGREIFD 168
D G+GY +DGRE +D
Sbjct: 61 DNGEGYADDGREDWD 75
>gi|357131369|ref|XP_003567311.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase alpha catalytic
subunit-like [Brachypodium distachyon]
Length = 1538
Score = 342 bits (878), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 199/412 (48%), Positives = 272/412 (66%), Gaps = 45/412 (10%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLH+FH K +++PDK + +NK
Sbjct: 811 LELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKFIVPDK-FARNK 869
Query: 477 KEG-------------------------EETGEANKGKGRKKAAYSGGLVLEPKKGFYDK 511
+ +E ++GK RK +Y+GGLVLEPKKG YDK
Sbjct: 870 ELNSAKRKISADTEGANAADGAADPSIDDEVHHGDQGKARKGPSYAGGLVLEPKKGLYDK 929
Query: 512 FIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+I+L+DFNSLYPSIIQE+NICFTT V D ++ LP +V TG+LP +K LV
Sbjct: 930 YILLLDFNSLYPSIIQEFNICFTT--VERSSDGNLPN----LPTSKV-TGVLPELLKSLV 982
Query: 572 ESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
E RR VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF NSRFFA+PLA L+T
Sbjct: 983 ERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFFAKPLAELITL 1039
Query: 631 KGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
+GREIL NT LV+ NLN EVIYGDTDS+MI ++D I ++ E NK Y+ LE
Sbjct: 1040 QGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKAIAGKVIQEVNKKYRCLE 1099
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+D+DGVYK MLLLKKKKYAA+ ++ +G + + E KG+D+VRRDWS L+ E G F ++
Sbjct: 1100 IDLDGVYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDWSLLSKEIGDFCLN 1157
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL + + DD +++IH + +++ + +G + L ITK LTKAPE
Sbjct: 1158 QIL-----SGGTCDDVVESIHNSLVQVQEQMKSGQIELEKYIITKSLTKAPE 1204
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 27/197 (13%)
Query: 211 VFRMFFLDAFEDIYK-QPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 269
+ LDA+E+ + GT+YLFGKV + + SCCV+V+N+ R IY +P S
Sbjct: 360 ALPFYILDAYEEPFGVNSGTLYLFGKVEIGKR--FHSCCVVVKNMQRCIYAIPSSSVFPR 417
Query: 270 KEPVSI----------AQVYSEFDQIATQYK-----------ILDFKSRKIEKKYAFNLP 308
I + + + ++A+ K I +F +++ YAF
Sbjct: 418 DNISRIERNSTSSDASSSLRATLHELASGLKGEIADKLSDLNISNFVMTPVKRNYAFERT 477
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
+P+ +Y L++ Y K LP+DL G+ F + GT S LE L++RKIKGPSWL +
Sbjct: 478 DLPNGEQYVLKINYPYKDTTLPADLRGEHFHALLGTNNSALELFLIKRKIKGPSWLSISK 537
Query: 368 AEKFPS--RISWCKYEV 382
PS R+SWCK+EV
Sbjct: 538 FGTCPSTQRVSWCKFEV 554
Score = 39.7 bits (91), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 104 AAFQKLKDLKGQGVKHKY--EFTADENVYEEVSEKEYTERVLKRQEDD--WIDDDGGDGY 159
AA ++L+ ++ G + + ++ +Y+ V+E +Y V +R++D +I DD G GY
Sbjct: 27 AALERLRAIRSGGARAAAAAQVKMEDPIYDTVAEDDYAALVARRRKDAGAFIIDDDGLGY 86
Query: 160 VEDGRE 165
V+DGRE
Sbjct: 87 VDDGRE 92
>gi|302803376|ref|XP_002983441.1| hypothetical protein SELMODRAFT_234261 [Selaginella moellendorffii]
gi|300148684|gb|EFJ15342.1| hypothetical protein SELMODRAFT_234261 [Selaginella moellendorffii]
Length = 1386
Score = 342 bits (878), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 196/401 (48%), Positives = 268/401 (66%), Gaps = 31/401 (7%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+ +M L+VLPL Q+TN+ GN+ S+TL G R++R E+LLLH F+ + Y++PDK K
Sbjct: 730 LSLMFHLSVLPLTRQLTNISGNLWSKTLQGARAQRVEYLLLHEFYGRKYIVPDKVSASEK 789
Query: 477 K-------------EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYP 523
+ E E A + K +K AY+GGLVLEPKKG YDK+I+L+DFNSLYP
Sbjct: 790 EKDNEKKRKTAQQDEDFEPDSAVEAKNKKAPAYTGGLVLEPKKGLYDKYILLLDFNSLYP 849
Query: 524 SIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ 583
SIIQEYNICFTT V D I++L P G+LP +K LV+ R+QVK +K+
Sbjct: 850 SIIQEYNICFTT--VERSSDGSISSL----PNADA-PGVLPQVLKALVDRRKQVKQWLKK 902
Query: 584 PNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
++D+L Q DI+Q+ALKLTANSMYGCLGFPNSRF+A+ +A L+T++GREIL +T
Sbjct: 903 ---TTDVLKYQQMDIQQQALKLTANSMYGCLGFPNSRFYAKFIAELITSQGREILQSTVD 959
Query: 642 LVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
LV+N LN EVIYGDTDS+MI+ ++D I Q+ E NK YK LE+D+DGV+K ML
Sbjct: 960 LVQNVLNLEVIYGDTDSIMINTGLDDLLKAKSIAAQVIKEVNKKYKLLEIDLDGVFKRML 1019
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
LLKKKKYA + + ++GK+ E +G+D+VRRDWS L+ + G F++ QIL E S
Sbjct: 1020 LLKKKKYACVKVETSADGKLREVIEQRGLDIVRRDWSLLSKDVGNFILEQILSEGSR--- 1076
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+D + IH+ ++K++ D+ NG + L ITK L+K PE
Sbjct: 1077 --EDVVDAIHDKLRKLQDDMRNGRIELEKYVITKSLSKRPE 1115
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/206 (33%), Positives = 104/206 (50%), Gaps = 23/206 (11%)
Query: 212 FRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLP-------- 262
FFLDA+E+ + GTV+LFGKV + + SCCV V+NI R ++ +P
Sbjct: 283 LSFFFLDAYEEAFGANAGTVFLFGKV--QRGGKYVSCCVAVRNIQRCVFAVPGPSVFPDG 340
Query: 263 ---------RSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDL 313
S LK K ++ E + + + F +++ YAF+ V
Sbjct: 341 LVNTLEQEATSSELKVKLQEMAREMKMELSEKLMELNVSKFSMIPVKRSYAFDRMDVRSG 400
Query: 314 SEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
+ Y L++ Y K P LP DL G F+ VFGT+TS LE L++R+IKGP WL + + P
Sbjct: 401 AHYYLKLSYPFKDPTLPGDLRGAHFTSVFGTRTSALETFLIKRRIKGPCWLSISNSHQIP 460
Query: 373 --SRISWCKYEVQCNQMEKIRSKQGL 396
S+ISWCK EV + + + + L
Sbjct: 461 CSSQISWCKVEVSVDSPKDVANISTL 486
>gi|302784554|ref|XP_002974049.1| hypothetical protein SELMODRAFT_232193 [Selaginella moellendorffii]
gi|300158381|gb|EFJ25004.1| hypothetical protein SELMODRAFT_232193 [Selaginella moellendorffii]
Length = 1419
Score = 342 bits (877), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 196/401 (48%), Positives = 268/401 (66%), Gaps = 31/401 (7%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+ +M L+VLPL Q+TN+ GN+ S+TL G R++R E+LLLH F+ + Y++PDK K
Sbjct: 730 LSLMFHLSVLPLTRQLTNISGNLWSKTLQGARAQRVEYLLLHEFYGRKYIVPDKVSASEK 789
Query: 477 K-------------EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYP 523
+ E E A + K +K AY+GGLVLEPKKG YDK+I+L+DFNSLYP
Sbjct: 790 EKDNEKKRKKAQQDEDFEPDSAVEAKNKKAPAYTGGLVLEPKKGLYDKYILLLDFNSLYP 849
Query: 524 SIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ 583
SIIQEYNICFTT V D I++L P G+LP +K LV+ R+QVK +K+
Sbjct: 850 SIIQEYNICFTT--VERSSDGSISSL----PNADA-PGVLPQVLKALVDRRKQVKQWLKK 902
Query: 584 PNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
++D+L Q DI+Q+ALKLTANSMYGCLGFPNSRF+A+ +A L+T++GREIL +T
Sbjct: 903 ---TTDVLKYQQMDIQQQALKLTANSMYGCLGFPNSRFYAKFIAELITSQGREILQSTVD 959
Query: 642 LVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
LV+N LN EVIYGDTDS+MI+ ++D I Q+ E NK YK LE+D+DGV+K ML
Sbjct: 960 LVQNVLNLEVIYGDTDSIMINTGLDDLLKAKSIAAQVIKEVNKKYKLLEIDLDGVFKRML 1019
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
LLKKKKYA + + ++GK+ E +G+D+VRRDWS L+ + G F++ QIL E S
Sbjct: 1020 LLKKKKYACVKVETSADGKLREVIEQRGLDIVRRDWSLLSKDVGNFILEQILSEGSR--- 1076
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+D + IH+ ++K++ D+ NG + L ITK L+K PE
Sbjct: 1077 --EDVVDAIHDKLRKLQDDMRNGRIELEKYVITKSLSKRPE 1115
Score = 112 bits (281), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 103/206 (50%), Gaps = 23/206 (11%)
Query: 212 FRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLP-------- 262
FFLDA+E+ + GTV+LFGKV + + SCCV V+NI R ++ +P
Sbjct: 283 LSFFFLDAYEEAFGANSGTVFLFGKV--QRGGKYVSCCVAVRNIQRCVFAVPGPSVFPDG 340
Query: 263 ---------RSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDL 313
S LK K ++ E + + + F +++ YAF+ V
Sbjct: 341 LVNTLEQEATSSELKLKLQEMAREMKMELSEKLMELNVSKFSMIPVKRSYAFDRMDVRSG 400
Query: 314 SEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
+ Y L++ Y K P LP DL G F+ +FGT+TS LE L++R+IKGP WL + P
Sbjct: 401 AHYYLKLSYPFKDPTLPGDLRGAHFTSLFGTRTSALETFLIKRRIKGPCWLSISNPHQIP 460
Query: 373 --SRISWCKYEVQCNQMEKIRSKQGL 396
S+ISWCK EV + + + + L
Sbjct: 461 CSSQISWCKVEVSVDSPKDVANISTL 486
>gi|403166928|ref|XP_003326779.2| DNA polymerase alpha subunit A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375166785|gb|EFP82360.2| DNA polymerase alpha subunit A [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 1602
Score = 342 bits (876), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 185/407 (45%), Positives = 259/407 (63%), Gaps = 17/407 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I+ FIK S + + ++ ++ L L Q+TN+ GN + TL GGR++RNEF+LLH FH
Sbjct: 884 IINFIKHCEADSYFQMALINKVQYLSLTKQLTNLAGNNWNSTLHGGRAQRNEFILLHEFH 943
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKG--------KGRKKAAYSGGLVLEPKKGFYDKFI 513
++ PDK ++K T K KK Y GGLV EPK+G +DKFI
Sbjct: 944 RHKFICPDKLSFNDRKTLAATTNTTGEQGEGNGGNKAIKKDKYKGGLVFEPKRGLWDKFI 1003
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
++MDFNSLYPSIIQEYNI FTT+ R D D LP + G+LP I LV
Sbjct: 1004 LVMDFNSLYPSIIQEYNIDFTTV-NRAGCDDDENDQIPDLPPADMKQGVLPRLIATLVNR 1062
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RR+VK LMK P+ + QYDI+Q ALKLTANSMYGCLGF SRF+A+PLAAL T+KGR
Sbjct: 1063 RREVKKLMKAPDTPPSKIAQYDIKQMALKLTANSMYGCLGFEGSRFYARPLAALTTSKGR 1122
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL NT+ L E+ N +VIYGDTDS+MI+ N D+ + KIGN+ K N+ YK LE+DID
Sbjct: 1123 EILTNTRDLAESQNLDVIYGDTDSVMINTNALDFAAANKIGNEFKKLVNERYKLLEIDID 1182
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
GV++ MLLL+KKKYAAL + ++ +++ E+KG+D+ RR++ +L+ +A ++++ Q+L
Sbjct: 1183 GVFERMLLLQKKKYAALKVDAMTQARIV---EVKGLDMKRREYCKLSKDASQYILEQVL- 1238
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+ S + ++ IHE++ ++ + +G L I K+L K P
Sbjct: 1239 ----SGLSTELVVEKIHEYLTELGQSVKDGKKELDDFIIHKKLGKDP 1281
Score = 112 bits (281), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 111/218 (50%), Gaps = 28/218 (12%)
Query: 174 VPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLF 233
VPQ D + NK + P T++ + F+LD E G +YLF
Sbjct: 459 VPQPAT--DAQTTNKLTETP----------TENSQGNRLKFFWLDYQE----AEGVIYLF 502
Query: 234 GKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIA----QVYSEFDQIATQY 289
GKVF + + H +CCVIV+ + R +++LPR + ++ + + VY E + + +
Sbjct: 503 GKVFDQLSAKHVACCVIVEGMQRNLFVLPRPTMVD-EDGIEVKPTEDDVYDEVETVLEAH 561
Query: 290 KILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFL 348
+I +FK + +++KY F +P + E+ +V YS P + +G TFS +FGT TS
Sbjct: 562 QITEFKGKLVKRKYCFEEKDMPAECDEWFKVVYSYTKPPIARLTTGKTFSKIFGTGTSAF 621
Query: 349 ENLLLERKIKGPSWLE----FPEAEKFPSRISWCKYEV 382
E LL+RKI GP WL+ P P+ SWCK EV
Sbjct: 622 ELFLLKRKIMGPCWLDVQGAIPSTRATPA--SWCKLEV 657
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 107 QKLKDLKGQ--GVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDG 163
Q L+ LK G K Y+ + DE +YE VSE +Y V R EDD+I++D GYV+ G
Sbjct: 11 QHLEALKAARAGQKRDYKASQDEAIYETVSEDQYKSIVKGRLAEDDFIENDDDSGYVDQG 70
>gi|428168063|gb|EKX37013.1| DNA polymerase alpha subunit one [Guillardia theta CCMP2712]
Length = 997
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 195/427 (45%), Positives = 279/427 (65%), Gaps = 26/427 (6%)
Query: 412 HSSYIIKIMC-ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK 470
+ SY+ ++ +L +LPL Q+TN+ GN+ SR+L+ R+ER E+LLLH F + +V+PDK
Sbjct: 445 NDSYLCLLLTFKLMILPLTKQLTNLAGNLWSRSLLSARAERVEYLLLHEFQKLKFVMPDK 504
Query: 471 QYGKNKKEG---------EETGEAN-KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
NKK+G E +AN K RKKAAYSGGLVL+PK+G YDK I+L+DFNS
Sbjct: 505 A-TFNKKKGNKDDSNFDDEAEDDANPKWSKRKKAAYSGGLVLDPKRGLYDKHILLLDFNS 563
Query: 521 LYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
LYP+IIQE+NICFTT V +++ T +P +D G+LP IK LVE RR VK +
Sbjct: 564 LYPTIIQEFNICFTT--VLPSSNTEEETPRYEMPSKDLDEGVLPRVIKTLVERRRSVKEI 621
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
+K+ ++ Q DIRQ ALK+ ANSMYGCLGF SRF+A+PLA L+TA+GRE+L T
Sbjct: 622 IKKETDATK-RQQLDIRQSALKIMANSMYGCLGFTYSRFYAKPLAELITAQGRELLQKTV 680
Query: 641 SLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
+ +N LN EV+YGDTDS+ ++ + Y+ K N+ + E NK+++ LE+ +DG+Y +
Sbjct: 681 EVTQNKLNLEVVYGDTDSIFVNSGCDTYEEAVKTANEARKELNKMWRLLEVGLDGIYCPL 740
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LLL KKKYAALS+++ +GK+ +E KG+D+VRRDW LA AG ++ IL +
Sbjct: 741 LLLNKKKYAALSVTE-RDGKITKVKEKKGLDIVRRDWCVLAKRAGDKILDFIL-----SG 794
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLSRN 815
++D ++NIH +++++ TD++N +PL+ ITK LTK PE G Q+ +
Sbjct: 795 NPVEDVVENIHTYLRQLATDMENNSLPLSDYVITKGLTKEPEEYSDGKTQPHVQVAIKMK 854
Query: 816 RRGRRRR 822
RGR R
Sbjct: 855 ERGRPVR 861
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/183 (38%), Positives = 112/183 (61%), Gaps = 13/183 (7%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENN----SHSSCCVIVQNIDRKIYLLPRSEH 266
+ F++DA+ED+ K GTV+LFGK+ ++ N+ + SCC+ V+N+ R++++LPR +
Sbjct: 21 TLKFFWIDAYEDVSKA-GTVFLFGKIKIQNNDLDKPTFMSCCIHVENLQRQVFVLPREKL 79
Query: 267 L-----KTKEPVSIA-QVYSEFDQIATQYKILDFKSRKIEKKYAFNL--PGVPDLSEYLE 318
L +E V + V+ EF + A I K++ +++ Y ++ P +P S+YL+
Sbjct: 80 LDKDGNAMEEDVDLMNHVFPEFAKFARDAGIKKHKAKLVKRNYMYHFQDPSIPKSSQYLK 139
Query: 319 VRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWC 378
Y A+ PA+ SDL+G +F VFGT S LE LLL+RK+ GP WL AE + +SWC
Sbjct: 140 FVYPAEFPAVASDLAGRSFKKVFGTTQSCLELLLLKRKLMGPCWLNIQGAEPVSTPLSWC 199
Query: 379 KYE 381
KYE
Sbjct: 200 KYE 202
>gi|449518250|ref|XP_004166155.1| PREDICTED: DNA polymerase alpha catalytic subunit-like, partial
[Cucumis sativus]
Length = 1027
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 206/411 (50%), Positives = 270/411 (65%), Gaps = 40/411 (9%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK--QYGK 474
+++M L+VLPL Q+TN+ GN+ R+L G R++R E+LLLHAFH K Y++PDK Y K
Sbjct: 296 LELMFHLSVLPLTRQLTNISGNLWGRSLQGARAQRVEYLLLHAFHAKKYIVPDKNSSYVK 355
Query: 475 NKK---------------------EGE-ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKF 512
+KK +G E + GKG+K +Y GGLVLEPK+G YDK+
Sbjct: 356 DKKIVKKRTNHGSEEKNVDQFDLDDGNVEAPNTDSGKGKKGPSYLGGLVLEPKRGLYDKY 415
Query: 513 IILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVE 572
++L+DFNSLYPSIIQEYNICFTT V D I LP +V TG+LP +K LV+
Sbjct: 416 VLLLDFNSLYPSIIQEYNICFTT--VERSPDGVIPP----LPSSRV-TGVLPELLKNLVQ 468
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
RR VK+ MK N S L Q DI+Q+ALKLTANSMYGCLGF NSRF+A+PLA L+T++G
Sbjct: 469 RRRMVKSWMK--NASGLKLQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQG 526
Query: 633 REILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
REIL +T LV+ NL+ EVIYGDTDS+MI ++D V I ++ E NK YK LE+D
Sbjct: 527 REILQSTVDLVKNNLSLEVIYGDTDSIMIHSGLDDVGKVKAIAGKVIQEVNKKYKCLEID 586
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+DG+YK MLLLKKKKYAA+ + + +G E KG+D+VRRDWS L+ E G F ++QI
Sbjct: 587 LDGLYKRMLLLKKKKYAAVKL-QFKDGMPYEVIERKGLDMVRRDWSLLSKELGDFCLNQI 645
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
L + S +D +++IH+ + KI+ D+ G V L ITK LTK PE
Sbjct: 646 L-----SGGSCEDVVESIHDSLMKIQEDMRKGQVALEKYIITKTLTKPPEA 691
Score = 46.6 bits (109), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 348 LENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
LE LL++RKIKGPSWL + P+ R+SWCK+EV
Sbjct: 2 LELLLIKRKIKGPSWLSISKFSSRPASQRVSWCKFEV 38
>gi|388857734|emb|CCF48628.1| related to POL1-DNA-directed DNA polymerase alpha, 180 KD subunit
[Ustilago hordei]
Length = 1670
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 188/444 (42%), Positives = 269/444 (60%), Gaps = 53/444 (11%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ + + + + I ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 871 LLTFVRHCEVDTFFQMAIAAKVQILPLTKQLTNLAGNSWNKTLNGGRAERNEYILLHDFH 930
Query: 462 EKSYVLPDKQYGKNKKEGEET------------GEANKGKGR----KKAAYSGGLVLEPK 505
+ Y+ PDK KK+ ++ G N KK + GGLV EPK
Sbjct: 931 RQKYICPDKISAWEKKQIQQAAELKAKAKAKNAGGVNNAAASVVSSKKDKFKGGLVFEPK 990
Query: 506 KGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY---------- 552
+G +DK+I++MDFNSLYPSIIQE+NI FTT+ P + L+D I+
Sbjct: 991 RGLWDKYILVMDFNSLYPSIIQEFNIDFTTVERPPTQGLEDEGISASSTAAATGEDGSDS 1050
Query: 553 ---------------LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 597
+P VD G+LP I +LV RRQVK+LMK + ++ LMQ++I+
Sbjct: 1051 TFPTAAAVDVDKIPDIPSSDVDQGVLPRIIAQLVARRRQVKSLMKDKSATASQLMQWNIK 1110
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 657
Q ALKLTANSMYGCLGF NSRF+A+PLAAL T KGREIL TK L E++ +VIYGDTDS
Sbjct: 1111 QLALKLTANSMYGCLGFENSRFYARPLAALTTFKGREILTATKDLAESMLLDVIYGDTDS 1170
Query: 658 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSN 717
+MI+ N +Y +IG + K N+ Y+ LE+DIDGV++ MLLL+KKKYAA+ + + +
Sbjct: 1171 VMINTNATEYKEALRIGQEFKKSVNERYRLLEIDIDGVFERMLLLQKKKYAAVLVDE--D 1228
Query: 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 777
GK + EIKG+D+ RR++ L+ +V+ QIL Q + +++IHE++ +
Sbjct: 1229 GKR--TTEIKGLDMKRREYCALSKNVSNYVLDQILSGQ-----PTEIVVEHIHEYLSAMS 1281
Query: 778 TDLDNGFVPLTLLEITKQLTKAPE 801
T + G V L L I K+L K PE
Sbjct: 1282 TKIKTGEVALDDLIIYKRLGKNPE 1305
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/190 (39%), Positives = 108/190 (56%), Gaps = 9/190 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E K ++LD E + G VYL GKV K++ + SCC+ V I+R I+LLPRS+
Sbjct: 465 EQDKSLFFYWLDYLE---GENGVVYLVGKVKDKDSGRYVSCCLTVNGIERCIFLLPRSKL 521
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
+ T V ++Y EF+ ++ ++ I F S+ + +KYAF GVP S Y+++RY
Sbjct: 522 FENTHETDRVVGEDEIYDEFEDLSAKHGIKRFLSKWVTRKYAFEQAGVPAESNYMKIRYG 581
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE--KFPSRISWCKY 380
P LP D G TFS FGT TS E L+++R+I GPSWL+ A + + ISWCK
Sbjct: 582 FDEPQLPFDFKGRTFSKAFGTNTSPFELLVVKRRIFGPSWLKIQNASIAEGSTPISWCKM 641
Query: 381 EVQCNQMEKI 390
EV + + I
Sbjct: 642 EVSIDDPKDI 651
Score = 40.4 bits (93), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 99 KTNKFAAFQKLKD-LKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGG 156
K N AA + +D L D+ +Y++VSE EY + R ++D+I+DD G
Sbjct: 7 KLNALAALKAKRDGLAPTNATSADLSDDDDAIYDQVSEDEYRSILRGRIMDNDFIEDDDG 66
Query: 157 DGYVEDGREIFDDDI 171
GYV+ G++ +DD +
Sbjct: 67 SGYVDHGQDEWDDRV 81
>gi|384487376|gb|EIE79556.1| hypothetical protein RO3G_04261 [Rhizopus delemar RA 99-880]
Length = 1319
Score = 339 bits (870), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 199/422 (47%), Positives = 265/422 (62%), Gaps = 30/422 (7%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ F+K + +M +L VLPL Q+T + GN+ +RT+ G R+ERNEFLLLH FH
Sbjct: 667 LFHFLKHCSFDAYLSTSLMFKLQVLPLTHQLTALAGNLWARTMTGARAERNEFLLLHEFH 726
Query: 462 EKSYVLPDKQYGKNKKEGEETGEAN-------------------KGKGRKKAAYSGGLVL 502
+ Y+ PDK +G KE G+A K GR+K AY+GGLVL
Sbjct: 727 KAKYICPDKTFGN--KESVSVGQAVVQAAEQDDDEDALKEVSNVKKSGRRKPAYAGGLVL 784
Query: 503 EPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT-- 560
EPKKGFYDK+++L+DFNSLYPSIIQEYN+CFTT+ Q + E +P+ D+
Sbjct: 785 EPKKGFYDKYVLLLDFNSLYPSIIQEYNVCFTTVDRSAFQQGNEKNEEEKVPDVPGDSVP 844
Query: 561 -GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRF 619
GILP +K LV+ RRQVK MK S Q +IRQ+ALKLTANSMYGCLGF SRF
Sbjct: 845 EGILPKLLKTLVDRRRQVKNAMKGEK-SEAKYNQLNIRQQALKLTANSMYGCLGFTYSRF 903
Query: 620 FAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS 679
+A+PLA L+T KGREIL +T +L NL+ VIYGDTDS+M+ N ND + V K+GN ++
Sbjct: 904 YAKPLAMLITFKGREILQSTVNLAGNLDMNVIYGDTDSIMVYTNQNDLNEVKKMGNLLRK 963
Query: 680 ECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQL 739
+ N YK LE+ IDG +K+MLLLKKKKYAAL + + NG+++ S E KG+D+VRRDW L
Sbjct: 964 KVNDHYKLLEIGIDGYFKHMLLLKKKKYAALLVEEKDNGELVESVETKGLDLVRRDWCDL 1023
Query: 740 ASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + V+ IL +D D+ + IH +++ + G +PL I KQLTK
Sbjct: 1024 SHDVSSHVLDLIL-----SDKERDEVVNEIHTYLEVTVERIRQGEIPLEKYVINKQLTKR 1078
Query: 800 PE 801
P+
Sbjct: 1079 PQ 1080
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 86/171 (50%), Gaps = 32/171 (18%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
RM++ DA+E K+ G VYLF NS T +
Sbjct: 291 LRMWWYDAYE--RKEKGYVYLFAS-----GNS-------------------------TDK 318
Query: 272 PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSD 331
V I VY E ++ ++++I + S+K+ +KYAF L VP S+YL+V Y + P+L
Sbjct: 319 EVEITDVYEEVSELFSKHRITKYASKKVSRKYAFELHDVPAESDYLKVLYDYEQPSLTGT 378
Query: 332 LSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEV 382
+G TFS VFG T LE+ L++R I GP WL+ A+ + +WCK EV
Sbjct: 379 ETGKTFSRVFGANTGPLEHFLVKRDIMGPCWLDISGAQMSKTSETWCKVEV 429
>gi|409081694|gb|EKM82053.1| hypothetical protein AGABI1DRAFT_126401 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1438
Score = 338 bits (868), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 181/403 (44%), Positives = 261/403 (64%), Gaps = 13/403 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++EF++ L + Y + I ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 736 MLEFVQHCELDAHYQMAIGSKVQILPLTKQLTNLAGNAWNKTLNGGRAERNEYILLHEFH 795
Query: 462 EKSYVLPDKQYGKNK---KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
Y++PDK YGK K+ ++ +A K KG K+ Y GGLV +PK+G +D +I++MDF
Sbjct: 796 RLKYIVPDKTYGKKTAPVKQDDDDPDAPKTKG-KRDKYKGGLVFDPKRGLWDTYILVMDF 854
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNI FTT+ ++ + P + G+LP I LV+ RRQVK
Sbjct: 855 NSLYPSIIQEYNIDFTTVEQFEVEGENGEEKIPDPPPPKTAQGVLPRLIATLVQRRRQVK 914
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK + S L+Q+DI+Q+ALKLTANSMYGCLGF SRF+A+PLAAL T KGREIL +
Sbjct: 915 SLMKDKSASHAKLLQWDIKQQALKLTANSMYGCLGFEYSRFYARPLAALTTYKGREILTH 974
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
T+ L E+LN +V+YGDTDS+ ++ + KI K N YK LE+D+DGV++
Sbjct: 975 TRELAESLNLDVVYGDTDSVFVNSGQTELSEALKISASFKKTVNDRYKLLEIDLDGVFQR 1034
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LLL+KKKYAAL + + K+ EIKG+D+ RR++ L+ ++V+ QIL +
Sbjct: 1035 LLLLQKKKYAALKVEEGGRTKV----EIKGLDMKRREYCALSKNVSQYVLDQILSGE--- 1087
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ ++NIHE++ I ++ NG + I K+L K PE
Sbjct: 1088 --PTEIVVENIHEYLTTIGQNVRNGSTKVEEFIIFKRLGKNPE 1128
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 14/189 (7%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
R F++D E G +Y GK+ K++ SCCV V+N+ R ++ LPR + + E
Sbjct: 331 LRFFWIDYLE----LDGKIYFIGKLKDKKSGVWISCCVAVENMQRNLFCLPREKRHEQDE 386
Query: 272 PVSIAQ---------VYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRY 321
I + VYS+F+ I + KI ++ + +++KYAF VP D +++L+V Y
Sbjct: 387 DGDITETDIVPTMEDVYSDFELIRKELKIKKWRGKIVKRKYAFGEKDVPRDETQWLKVVY 446
Query: 322 SAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
P +P + +FGT T+ E L+L+RKI GP WL+ ISWCK E
Sbjct: 447 GFNEPPIPPKAESPNIARIFGTSTNAFELLVLKRKIMGPCWLQIKNPVVDNKGISWCKLE 506
Query: 382 VQCNQMEKI 390
V + + I
Sbjct: 507 VTVSDPKDI 515
>gi|171687046|ref|XP_001908464.1| hypothetical protein [Podospora anserina S mat+]
gi|170943484|emb|CAP69137.1| unnamed protein product [Podospora anserina S mat+]
Length = 1472
Score = 338 bits (868), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 186/431 (43%), Positives = 274/431 (63%), Gaps = 24/431 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + + Y+ + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 751 GLMDYISHAEIDTYYVAALALRTQILPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 810
Query: 461 HEKSYVLPDKQY--GKNKKEGEETG-EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
H Y+ PDK+ G+ + E EE G EA K K + K LV EP+KG YDKF+++MD
Sbjct: 811 HRNKYICPDKEPFKGRARPEDEEDGGEAGKKKDKYKGG----LVFEPEKGLYDKFVLVMD 866
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ L+D +PE Q D G+LP I LV+ RRQV
Sbjct: 867 FNSLYPSIIQEYNICFTTVDRTFLEDG-----VPQVPEKQ-DLGVLPRLIATLVDRRRQV 920
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K+LMK + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGRE+L
Sbjct: 921 KSLMKDKTATPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREVLR 980
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E++ +VIYGDTDS+MI+ NV++ ++G + K+ N YK+LE+DID +++
Sbjct: 981 STKDLAESMQLQVIYGDTDSVMINANVDNVADALRVGREFKAAVNGSYKKLEIDIDNIFR 1040
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA+++ + ++GK + EIKG+D+ RR++ L+ E K ++ +IL
Sbjct: 1041 RILLQAKKKYAAVNLVE-TDGKYVEKMEIKGLDMKRREYCPLSREISKKLLDEIL----- 1094
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP-----EGGKVCITQIRL 812
+ ++D +Q IH+++++I + + G V + I QL K+P G + Q+ L
Sbjct: 1095 SGNDIEDSVQKIHDYLREISSKMREGKVQIPKYIILTQLGKSPTEYGQNGDTMPQIQVAL 1154
Query: 813 SRNRRGRRRRR 823
RG+ R+
Sbjct: 1155 REMARGKTMRK 1165
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 4/146 (2%)
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFD 283
G++ LFGKV K+ N H SC V + NI RK+Y LPR ++ T E V + VY+E D
Sbjct: 361 GSLCLFGKVLNKKTNHHVSCFVKIDNILRKLYFLPRKTRVQGKVDTGEEVEMMDVYNEVD 420
Query: 284 QIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGT 343
I T+ + +K + +KYAF LP VP +YL++ Y + + +G+TFSHVFGT
Sbjct: 421 AIMTKKNVGMYKIKACTRKYAFELPDVPKEGQYLKLLYPYTKAPIDMNTTGETFSHVFGT 480
Query: 344 KTSFLENLLLERKIKGPSWLEFPEAE 369
T+ E +L + IKGP WL+ +A+
Sbjct: 481 NTALFEQFVLWKNIKGPCWLKIEDAD 506
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 10/108 (9%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGD 157
K +KFA + L++ G+ YE E++YEEV E +Y + V +R EDD++ DD G+
Sbjct: 7 KRDKFAELRALRE-SGKKKFDTYEVEEVEDLYEEVDENQYKKIVRQRLNEDDFVVDDNGE 65
Query: 158 GYVEDGRE-------IFDDDIED-VPQKKEKHDKRKKNKNIQNPNAKD 197
GY +DGRE +D + ED V ++KE+ K+++++ +A D
Sbjct: 66 GYADDGREEWDRIPAAYDSESEDGVEERKERKSKKQRDEEKAKRDAND 113
>gi|426196928|gb|EKV46856.1| hypothetical protein AGABI2DRAFT_119036 [Agaricus bisporus var.
bisporus H97]
Length = 1438
Score = 338 bits (868), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 181/403 (44%), Positives = 261/403 (64%), Gaps = 13/403 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++EF++ L + Y + I ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 736 MLEFVQHCELDAHYQMAIGSKVQILPLTKQLTNLAGNAWNKTLNGGRAERNEYILLHEFH 795
Query: 462 EKSYVLPDKQYGKNK---KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
Y++PDK YGK K+ ++ +A K KG K+ Y GGLV +PK+G +D +I++MDF
Sbjct: 796 RLKYIVPDKTYGKKTVPVKQDDDDPDAPKTKG-KRDKYKGGLVFDPKRGLWDTYILVMDF 854
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNI FTT+ ++ + P + G+LP I LV+ RRQVK
Sbjct: 855 NSLYPSIIQEYNIDFTTVEQFEVEGENGEEKIPDPPPPKTAQGVLPRLIATLVQRRRQVK 914
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK + S L+Q+DI+Q+ALKLTANSMYGCLGF SRF+A+PLAAL T KGREIL +
Sbjct: 915 SLMKDKSASHAKLLQWDIKQQALKLTANSMYGCLGFEYSRFYARPLAALTTYKGREILTH 974
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
T+ L E+LN +V+YGDTDS+ ++ + KI K N YK LE+D+DGV++
Sbjct: 975 TRELAESLNLDVVYGDTDSVFVNSGQTELSEALKISASFKKTVNDRYKLLEIDLDGVFQR 1034
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LLL+KKKYAAL + + K+ EIKG+D+ RR++ L+ ++V+ QIL +
Sbjct: 1035 LLLLQKKKYAALKVEEGGRTKV----EIKGLDMKRREYCALSKNVSQYVLDQILSGE--- 1087
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ ++NIHE++ I ++ NG + I K+L K PE
Sbjct: 1088 --PTEIVVENIHEYLTTIGQNVRNGSTKVEEFIIFKRLGKNPE 1128
Score = 101 bits (252), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 14/189 (7%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
R F++D E G +Y GK+ K++ SCCV V+N+ R ++ LPR + + E
Sbjct: 331 LRFFWIDYLE----LDGKIYFIGKLKDKKSGVWISCCVAVENMQRNLFCLPREKRHEQDE 386
Query: 272 PVSIAQ---------VYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRY 321
I + VYS+F+ I + KI ++ + +++KYAF VP D +++L+V Y
Sbjct: 387 DGDITETDIVPTMEDVYSDFELIRKELKIKKWRGKIVKRKYAFGEKDVPRDETQWLKVVY 446
Query: 322 SAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
P +P + +FGT T+ E L+L+RKI GP WL+ ISWCK E
Sbjct: 447 GFNEPPIPPKAESPNIARIFGTSTNAFELLVLKRKIMGPCWLQVKNPVVDNKGISWCKLE 506
Query: 382 VQCNQMEKI 390
V + + I
Sbjct: 507 VTVSDPKDI 515
>gi|85541645|sp|O48653.2|DPOLA_ORYSJ RecName: Full=DNA polymerase alpha catalytic subunit
Length = 1534
Score = 338 bits (867), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 276/425 (64%), Gaps = 41/425 (9%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+++ +++ + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLHAF
Sbjct: 788 ALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAF 847
Query: 461 HEKSYVLPDK-----QYGKNKKEGEETGEA-----------------NKGKGRKKAAYSG 498
H + +++PDK ++ K++ EA ++GK +K +Y+G
Sbjct: 848 HARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQGKTKKGPSYAG 907
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPKKG YDK+++L+DFNSLYPSIIQEYNICFTT V D ++ LP +
Sbjct: 908 GLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT--VDRSADGNVPN----LPASKT 961
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNS 617
TG+LP +K LVE RR VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF NS
Sbjct: 962 -TGVLPELLKSLVERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYGCLGFSNS 1017
Query: 618 RFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
RF+A+PLA L+T +GREIL NT LV+ NLN EVIYGDTDS+MI ++D I +
Sbjct: 1018 RFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGK 1077
Query: 677 IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDW 736
+ E NK Y+ LE+D+DG+YK MLLLKKKKYAA+ ++ +G + + E KG+D+VRRDW
Sbjct: 1078 VIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDW 1135
Query: 737 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
S L+ E G F ++QIL + S DD +++IH + +++ + G L ITK L
Sbjct: 1136 SLLSKEIGDFCLNQIL-----SGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSL 1190
Query: 797 TKAPE 801
TKAPE
Sbjct: 1191 TKAPE 1195
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 104/205 (50%), Gaps = 27/205 (13%)
Query: 211 VFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL-- 267
+ LDA+E+ + GTVYLFGKV V + SCCV+V+N+ R IY +P S
Sbjct: 353 ALPFYILDAYEEPFGANSGTVYLFGKVEVGKR--FHSCCVVVKNMQRCIYAIPSSSIFPR 410
Query: 268 ------------KTKEPVSIAQVY-------SEFDQIATQYKILDFKSRKIEKKYAFNLP 308
P A ++ SE + + + +F +++ YAF
Sbjct: 411 DTISRLEKNSTTSDSSPSLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERT 470
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
+P+ +Y L++ Y K PALP+DL G F + GT S LE LL++RKIKGPSWL +
Sbjct: 471 DLPNGEQYVLKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISK 530
Query: 368 AEKFPS--RISWCKYEVQCNQMEKI 390
P+ R+SWCK+EV + + I
Sbjct: 531 FLACPATQRVSWCKFEVTVDSPKDI 555
>gi|339250812|ref|XP_003374391.1| DNA polymerase (Pol2) superfamily [Trichinella spiralis]
gi|316969308|gb|EFV53426.1| DNA polymerase (Pol2) superfamily [Trichinella spiralis]
Length = 1183
Score = 338 bits (867), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 199/416 (47%), Positives = 264/416 (63%), Gaps = 39/416 (9%)
Query: 410 MLHSSYIIKIMCE-LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLP 468
+L +++ +CE L L LAI+IT G VLS+TL+GGR+ER E+LLLHAF ++YV P
Sbjct: 473 VLADAFLCWRICEKLRCLQLAIEITRAVGGVLSKTLLGGRAERTEYLLLHAFDAQNYVYP 532
Query: 469 DK--QYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSII 526
+K GK K + G KKA+Y+GGLVL+PKKG YD+ ++L+DFNSLYPSII
Sbjct: 533 EKVSHGGKQKVVVTSLDDEEIIIGSKKASYAGGLVLDPKKGLYDRIVLLLDFNSLYPSII 592
Query: 527 QEYNICFTTIPVRMLQD----SDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK 582
QE+NICFTT+ + D SD L E +P+ + GILP EIK+LVESRRQ+K+LMK
Sbjct: 593 QEFNICFTTVDLSPFTDPIKGSD-EALPE-IPDPEKAAGILPKEIKRLVESRRQLKSLMK 650
Query: 583 QPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSL 642
P + DL QY IRQ+ALK+TANS+YGCLGF SRF+A+PLAAL+TAKGREIL NTK
Sbjct: 651 -PGIPPDLFQQYHIRQQALKITANSVYGCLGFAASRFYAKPLAALITAKGREILTNTKLA 709
Query: 643 VENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIK-------------SECNKLY---- 685
VE L EVIYGDTDS+MI+ N+ D +G +++ S C L
Sbjct: 710 VEKLGLEVIYGDTDSIMINSNLTSIDDALAMGKKVEKKKLGRIAVVHFSSTCVSLCFADQ 769
Query: 686 KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGK 745
+ E I +KKKYAALS K +G +E+KG+D+VRRDWS +A EAG
Sbjct: 770 SRNEQTIQAA-------RKKKYAALSCEKRPDGSWQFKKEVKGLDIVRRDWSPIAIEAGN 822
Query: 746 FVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+VI+ IL +D++ D+ I E++ K+ +D+ V L I KQL K+P+
Sbjct: 823 YVINSIL-----SDFTSDETAARIREYLMKLTSDVRQNKVVLGKFIIRKQLAKSPD 873
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 106/198 (53%), Gaps = 22/198 (11%)
Query: 210 KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 269
+V ++LDA E K PG VYLFGKV S SCC+IV+NI R+I++LPR L+T
Sbjct: 43 QVVNFYYLDAVEAGKKHPGIVYLFGKVQHLIQKSWISCCLIVKNILRRIWILPRQTDLQT 102
Query: 270 KEPVSIAQVYSEFDQIATQYKILDFK--------------SRKIEKKYAFNLPGVPDLSE 315
EP + V+ E ++ + KI +F+ + +EKK+ N +
Sbjct: 103 GEPFKLEDVHQELTELMNKLKIDEFRIKVTAFCLFNALLLVKAVEKKFWLNSDQYAQEAV 162
Query: 316 YLEVRYSAK----C----PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
YLE+RYS K C PAL ++L+G TF +FGT +S LE L+LE IKGP ++
Sbjct: 163 YLELRYSVKNFLDCNFKYPALEANLTGKTFQAIFGTTSSELELLILEMNIKGPRLMKISN 222
Query: 368 AEKFPSRISWCKYEVQCN 385
S+ +WC E+ N
Sbjct: 223 PTMAASQRTWCAVELIVN 240
>gi|393236145|gb|EJD43695.1| hypothetical protein AURDEDRAFT_88520 [Auricularia delicata TFB-10046
SS5]
Length = 1449
Score = 338 bits (867), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 181/407 (44%), Positives = 265/407 (65%), Gaps = 14/407 (3%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+VEF++ + + + + I ++ +LPL +Q+TN+ GN ++TL GGR+ERNE++LLH F+
Sbjct: 738 LVEFVQHCEVDAFFQMAIADKVQILPLTLQLTNLAGNAWNKTLNGGRAERNEYILLHEFY 797
Query: 462 EKSYVLPDKQYGKN-----KKEGEETGEANKGKGR-KKAAYSGGLVLEPKKGFYDKFIIL 515
+ Y+ PDK YGK K E EE +A + K+ Y GGLVL+PK+G +DK+I++
Sbjct: 798 KLGYICPDKTYGKKSALAVKAEAEEGDDAAAVTSKGKRDKYKGGLVLQPKRGLWDKYILV 857
Query: 516 MDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRR 575
MDFNSLYPSIIQEYNI +TTI + D+D L E P+ G++P IK+LV+ R+
Sbjct: 858 MDFNSLYPSIIQEYNIDYTTIDISQFLDTD--ELPEK-PDADKAEGVMPRVIKELVQRRQ 914
Query: 576 QVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREI 635
QVK LMK PNL QYDIRQ+ALKLTANSMYGCLGF SRF+A+PLAAL T GRE
Sbjct: 915 QVKKLMKAPNLPEARRKQYDIRQQALKLTANSMYGCLGFEYSRFYARPLAALTTFMGREA 974
Query: 636 LLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGV 695
L T + E + +V+YGDTDS+ ++ N +I N+ K N+ YK+LE+D+DG+
Sbjct: 975 LRRTCEVAEGMGIDVVYGDTDSVFLNSNKLTIKEAKEIANEFKKLVNEQYKRLEIDLDGI 1034
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
++ +LLL+KKKYAAL + K ++E+KG+D+ RR++ L+ + + ++ ILD +
Sbjct: 1035 FERLLLLQKKKYAALKVDGTDENKTT-TKEVKGLDMKRREYCALSKDMSQKILDVILDPK 1093
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+D ++ IHE + +R ++ +G +PL I K+L K PE
Sbjct: 1094 MSSDVV----VEKIHEGLIALRENVTSGNIPLEQFIINKRLGKEPEA 1136
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 101/191 (52%), Gaps = 12/191 (6%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ FR F+LDA+E G V+ GK K+ + SCCV V+N++R +Y+L R +
Sbjct: 333 ESDGSFRFFWLDAYE----ADGKVHFIGKCRDKDTKAWISCCVTVENMERNLYVLKRQKQ 388
Query: 267 LKTKE------PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPD-LSEYLEV 319
L E P V+++ I Q I +K++ +E++YAF +P +LEV
Sbjct: 389 LDDDENETDIIPTD-EDVWADVAAIRRQAGISSWKAKWVERQYAFGEKDIPTGKHPWLEV 447
Query: 320 RYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCK 379
YS PALPS++ + + GT TS E L+++R+I GP WL + K ISW +
Sbjct: 448 VYSFNHPALPSNIMTPNIARILGTNTSAFELLVMKRRIMGPCWLNIKQPTKTEKPISWTR 507
Query: 380 YEVQCNQMEKI 390
+EV + E I
Sbjct: 508 FEVIVSNPEDI 518
Score = 40.0 bits (92), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 125 ADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGREIF 167
D ++YEEVSE++Y V R Q DD++ DDG GY ++G + F
Sbjct: 53 VDTDIYEEVSEEQYNAIVKGRLQRDDFVQDDGVGGYQDNGMDDF 96
>gi|218189439|gb|EEC71866.1| hypothetical protein OsI_04575 [Oryza sativa Indica Group]
Length = 1532
Score = 338 bits (867), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 276/425 (64%), Gaps = 41/425 (9%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+++ +++ + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLHAF
Sbjct: 788 ALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAF 847
Query: 461 HEKSYVLPDK-----QYGKNKKEGEETGEA-----------------NKGKGRKKAAYSG 498
H + +++PDK ++ K++ EA ++GK +K +Y+G
Sbjct: 848 HARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQGKTKKGPSYAG 907
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPKKG YDK+++L+DFNSLYPSIIQEYNICFTT V D ++ LP +
Sbjct: 908 GLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT--VDRSADGNVPN----LPASKT 961
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNS 617
TG+LP +K LVE RR VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF NS
Sbjct: 962 -TGVLPELLKSLVERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYGCLGFSNS 1017
Query: 618 RFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
RF+A+PLA L+T +GREIL NT LV+ NLN EVIYGDTDS+MI ++D I +
Sbjct: 1018 RFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGK 1077
Query: 677 IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDW 736
+ E NK Y+ LE+D+DG+YK MLLLKKKKYAA+ ++ +G + + E KG+D+VRRDW
Sbjct: 1078 VIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDW 1135
Query: 737 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
S L+ E G F ++QIL + S DD +++IH + +++ + G L ITK L
Sbjct: 1136 SLLSKEIGDFCLNQIL-----SGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSL 1190
Query: 797 TKAPE 801
TKAPE
Sbjct: 1191 TKAPE 1195
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 104/205 (50%), Gaps = 27/205 (13%)
Query: 211 VFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL-- 267
+ LDA+E+ + GTVYLFGKV V + SCCV+V+N+ R IY +P S
Sbjct: 353 ALPFYILDAYEEPFGANSGTVYLFGKVEVGKR--FHSCCVVVKNMQRCIYAIPSSSIFPR 410
Query: 268 ------------KTKEPVSIAQVY-------SEFDQIATQYKILDFKSRKIEKKYAFNLP 308
P A ++ SE + + + +F +++ YAF
Sbjct: 411 DTISRLEKNSTTSDSSPSLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERT 470
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
+P+ +Y L++ Y K PALP+DL G F + GT S LE LL++RKIKGPSWL +
Sbjct: 471 DLPNGEQYVLKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISK 530
Query: 368 AEKFPS--RISWCKYEVQCNQMEKI 390
P+ R+SWCK+EV + + I
Sbjct: 531 FVACPATQRVSWCKFEVTVDSPKDI 555
>gi|56784778|dbj|BAD81999.1| putative DNA polymerase alpha catalytic subunit [Oryza sativa
Japonica Group]
Length = 1532
Score = 338 bits (867), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 276/425 (64%), Gaps = 41/425 (9%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+++ +++ + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLHAF
Sbjct: 788 ALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAF 847
Query: 461 HEKSYVLPDK-----QYGKNKKEGEETGEA-----------------NKGKGRKKAAYSG 498
H + +++PDK ++ K++ EA ++GK +K +Y+G
Sbjct: 848 HARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQGKTKKGPSYAG 907
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPKKG YDK+++L+DFNSLYPSIIQEYNICFTT V D ++ LP +
Sbjct: 908 GLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT--VDRSADGNVPN----LPASKT 961
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNS 617
TG+LP +K LVE RR VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF NS
Sbjct: 962 -TGVLPELLKSLVERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYGCLGFSNS 1017
Query: 618 RFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
RF+A+PLA L+T +GREIL NT LV+ NLN EVIYGDTDS+MI ++D I +
Sbjct: 1018 RFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGK 1077
Query: 677 IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDW 736
+ E NK Y+ LE+D+DG+YK MLLLKKKKYAA+ ++ +G + + E KG+D+VRRDW
Sbjct: 1078 VIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDW 1135
Query: 737 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
S L+ E G F ++QIL + S DD +++IH + +++ + G L ITK L
Sbjct: 1136 SLLSKEIGDFCLNQIL-----SGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSL 1190
Query: 797 TKAPE 801
TKAPE
Sbjct: 1191 TKAPE 1195
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 104/205 (50%), Gaps = 27/205 (13%)
Query: 211 VFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL-- 267
+ LDA+E+ + GTVYLFGKV V + SCCV+V+N+ R IY +P S
Sbjct: 353 ALPFYILDAYEEPFGANSGTVYLFGKVEVGKR--FHSCCVVVKNMQRCIYAIPSSSIFPR 410
Query: 268 ------------KTKEPVSIAQVY-------SEFDQIATQYKILDFKSRKIEKKYAFNLP 308
P A ++ SE + + + +F +++ YAF
Sbjct: 411 DTISRLEKNSTTSDSSPSLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERT 470
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
+P+ +Y L++ Y K PALP+DL G F + GT S LE LL++RKIKGPSWL +
Sbjct: 471 DLPNGEQYVLKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISK 530
Query: 368 AEKFPS--RISWCKYEVQCNQMEKI 390
P+ R+SWCK+EV + + I
Sbjct: 531 FLACPATQRVSWCKFEVTVDSPKDI 555
>gi|242059369|ref|XP_002458830.1| hypothetical protein SORBIDRAFT_03g041040 [Sorghum bicolor]
gi|241930805|gb|EES03950.1| hypothetical protein SORBIDRAFT_03g041040 [Sorghum bicolor]
Length = 1541
Score = 338 bits (867), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 194/411 (47%), Positives = 269/411 (65%), Gaps = 43/411 (10%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK------ 470
+++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLH+FH + +++PDK
Sbjct: 811 LELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHARKFIVPDKFARNKE 870
Query: 471 -----------QYGKNKKEG-------EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKF 512
G N +G +E ++GK RK +Y+GGLVLEPKKG YDK+
Sbjct: 871 LNSTKRKMNADTEGANADDGAADPSVDDEVHNGDQGKARKGPSYAGGLVLEPKKGLYDKY 930
Query: 513 IILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVE 572
++L+DFNSLYPSIIQEYNICFTT V D + LP + TG+LP ++ LVE
Sbjct: 931 VLLLDFNSLYPSIIQEYNICFTT--VERSSDGSVPN----LPASKA-TGVLPELLRSLVE 983
Query: 573 SRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
RR VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF NSRF+A+PLA L+T +
Sbjct: 984 RRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQ 1040
Query: 632 GREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
GREIL NT LV+ NLN EVIYGDTDS+MI ++D I ++ E NK Y+ LE+
Sbjct: 1041 GREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKAIAGKVIQEVNKKYRCLEI 1100
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
D+DG+YK MLLLKKKKYAA+ ++ +G + + E KG+D+VRRDWS L+ + G F ++Q
Sbjct: 1101 DLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDWSLLSKDIGDFCLNQ 1158
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
IL + + DD +++IH + +++ + +G + L ITK LTKAPE
Sbjct: 1159 IL-----SGGTCDDVVESIHSSLVQVQEQMRSGQIELEKYVITKSLTKAPE 1204
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 103/197 (52%), Gaps = 27/197 (13%)
Query: 211 VFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK- 268
+ LDA+E+ + GTVYLFGKV V + SCCVIV+NI R IY +P
Sbjct: 360 ALPFYILDAYEEPFGANSGTVYLFGKVEVGKR--FHSCCVIVKNIQRCIYAIPNHSVFPR 417
Query: 269 ------TKEPVS---IAQVYSEFDQIATQYK-----------ILDFKSRKIEKKYAFNLP 308
+ P S + + + ++A+ K + +F +++ YAF
Sbjct: 418 DSISGIERNPTSADLLPSLRATLHELASGLKSEIADKLSDLNVSNFVMTPVKRNYAFERT 477
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
+P+ +Y L++ Y K PALP+DL G+ F + GT S LE L++RK+KGPSWL +
Sbjct: 478 DLPNGEQYVLKINYPYKDPALPADLRGEHFHALLGTNNSALELFLIKRKVKGPSWLSVSK 537
Query: 368 AEKFPS--RISWCKYEV 382
PS R+SWCK+EV
Sbjct: 538 FVTRPSTQRVSWCKFEV 554
>gi|10177597|dbj|BAB10944.1| DNA polymerase alpha 1 [Arabidopsis thaliana]
Length = 1492
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 201/444 (45%), Positives = 272/444 (61%), Gaps = 40/444 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+VE I+ + +++M L+VLPL +Q+TN+ GN+ +TL G R++R E+ LLH FH
Sbjct: 780 LVELIECGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQRIEYYLLHTFH 839
Query: 462 EKSYVLPDK---------------QYGKNKKEGEE-----TGEANKGKG---RKKAAYSG 498
K ++LPDK Y + +E T E + KG +K AY+G
Sbjct: 840 SKKFILPDKISQRMKEIKSSKRRMDYAPEDRNVDELDADLTLENDPSKGSKTKKGPAYAG 899
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPK+G YDK+++L+DFNSLYPSIIQEYNICFTTIP +D LP Q
Sbjct: 900 GLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTIPRS--EDG-----VPRLPSSQT 952
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSR 618
GILP ++ LV R+ VK MK+ + + DIRQ+ALKLTANSMYGCLGF NSR
Sbjct: 953 -PGILPKLMEHLVSIRKSVKLKMKKE--TGLKYWELDIRQQALKLTANSMYGCLGFSNSR 1009
Query: 619 FFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQI 677
F+A+PLA L+T +GR+IL T LV+N LN EVIYGDTDS+MI ++D + V I +++
Sbjct: 1010 FYAKPLAELITLQGRDILQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVKAIKSKV 1069
Query: 678 KSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWS 737
E NK Y+ L++D DG+YK MLLL+KKKYAA+ + + +GK E KGVD+VRRDWS
Sbjct: 1070 IQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKL-QFKDGKPCEDIERKGVDMVRRDWS 1128
Query: 738 QLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLT 797
L+ E G +S+IL S +D ++ IH + KI+ ++ NG V L ITK LT
Sbjct: 1129 LLSKEIGDLCLSKIL-----YGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYVITKTLT 1183
Query: 798 KAPEGGKVCITQIRLSRNRRGRRR 821
K P +Q + R R+R
Sbjct: 1184 KPPAAYPDSKSQPHVQVALRMRQR 1207
Score = 122 bits (306), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 31/226 (13%)
Query: 212 FRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
R F LDA+E+ + GT+YLFGKV K +++ SCCV+V+NI R +Y +P +
Sbjct: 345 LRFFILDAYEEAFGASMGTIYLFGKV--KMGDTYKSCCVVVKNIQRCVYAIPNDSIFPSH 402
Query: 271 EPVSIAQ----------------------VYSEFDQIATQYKILDFKSRKIEKKYAFNLP 308
E + + Q + +E Q Q + +F +++ YAF P
Sbjct: 403 ELIMLEQEVKDSRLSPESFRGKLHEMASKLKNEIAQELLQLNVSNFSMAPVKRNYAFERP 462
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
VP +Y L++ YS K LP DL G++FS + G+ TS LE+ +L+RKI GP WL+
Sbjct: 463 DVPAGEQYVLKINYSFKDRPLPEDLKGESFSALLGSHTSALEHFILKRKIMGPCWLKISS 522
Query: 368 -AEKFPSR-ISWCKYEVQCNQMEKIR---SKQGLIYLIGIVEFIKF 408
+ PS +SWCK+EV + I S++ +++ +V I
Sbjct: 523 FSTCSPSEGVSWCKFEVTVQSPKDITILVSEEKVVHPPAVVTAINL 568
>gi|222619596|gb|EEE55728.1| hypothetical protein OsJ_04212 [Oryza sativa Japonica Group]
Length = 1523
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 276/425 (64%), Gaps = 41/425 (9%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+++ +++ + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLHAF
Sbjct: 779 ALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAF 838
Query: 461 HEKSYVLPDK-----QYGKNKKEGEETGEA-----------------NKGKGRKKAAYSG 498
H + +++PDK ++ K++ EA ++GK +K +Y+G
Sbjct: 839 HARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQGKTKKGPSYAG 898
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPKKG YDK+++L+DFNSLYPSIIQEYNICFTT V D ++ LP +
Sbjct: 899 GLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT--VDRSADGNVPN----LPASKT 952
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNS 617
TG+LP +K LVE RR VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF NS
Sbjct: 953 -TGVLPELLKSLVERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYGCLGFSNS 1008
Query: 618 RFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
RF+A+PLA L+T +GREIL NT LV+ NLN EVIYGDTDS+MI ++D I +
Sbjct: 1009 RFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGK 1068
Query: 677 IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDW 736
+ E NK Y+ LE+D+DG+YK MLLLKKKKYAA+ ++ +G + + E KG+D+VRRDW
Sbjct: 1069 VIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDW 1126
Query: 737 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
S L+ E G F ++QIL + S DD +++IH + +++ + G L ITK L
Sbjct: 1127 SLLSKEIGDFCLNQIL-----SGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSL 1181
Query: 797 TKAPE 801
TKAPE
Sbjct: 1182 TKAPE 1186
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 96/204 (47%), Gaps = 35/204 (17%)
Query: 211 VFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL-- 267
+ LDA+E+ + GTVYLFGKV V + SCCV+V+N+ R IY +P S
Sbjct: 354 ALPFYILDAYEEPFGANSGTVYLFGKVEVGKR--FHSCCVVVKNMQRCIYAIPSSSIFPR 411
Query: 268 ------------KTKEPVSIAQVY-------SEFDQIATQYKILDFKSRKIEKKYAFNLP 308
P A ++ SE + + + +F +++ YAF
Sbjct: 412 DTISRLEKNSTTSDSSPSLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERT 471
Query: 309 GVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
+P PALP+DL G F + GT S LE LL++RKIKGPSWL +
Sbjct: 472 DLPKWGPD---------PALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKF 522
Query: 369 EKFPS--RISWCKYEVQCNQMEKI 390
P+ R+SWCK+EV + + I
Sbjct: 523 LACPATQRVSWCKFEVTVDSPKDI 546
>gi|389745369|gb|EIM86550.1| DNA polymerase alpha catalytic subunit [Stereum hirsutum FP-91666
SS1]
Length = 1452
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 188/407 (46%), Positives = 265/407 (65%), Gaps = 21/407 (5%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+V F++ L + + + C++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 745 LVRFVRHCELDAHLQMALACKVQMLPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFH 804
Query: 462 EKSYVLPDKQYGKNK--------KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
Y+ PDKQ+G+ ++GEETG+ +K KK Y GGLV EPK+G +DK+I
Sbjct: 805 RLKYICPDKQWGRKAAQIKVEVDEDGEETGKKSK---NKKDKYKGGLVFEPKRGLWDKYI 861
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
++MDFNSLYPSIIQEYNI FTTI +D + + E + V G+LP I LV
Sbjct: 862 LVMDFNSLYPSIIQEYNIDFTTIDRPEAEDGEEEKIPEPPED-DVPQGVLPRLIATLVNR 920
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RRQVK+LMK +L L+Q+DI+Q+ALKLTANSMYGCLGF SRFFA+PLAAL T KGR
Sbjct: 921 RRQVKSLMKDRSLPHAKLLQFDIKQQALKLTANSMYGCLGFEGSRFFARPLAALTTFKGR 980
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL NT+ L E+L +VIYGDTDSL ++ NV + KI + K N+ YK LE+D+D
Sbjct: 981 EILTNTRELAESLQLDVIYGDTDSLFVNSNVTELSDALKISAEFKKAVNERYKLLEIDLD 1040
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
GV++ +LLL+KKKYAA+ K+ +G + E+KG+D+ RR++ L+ ++V+ QIL
Sbjct: 1041 GVFQRLLLLQKKKYAAI---KVEDGTRT-TTEVKGLDMKRREYCALSKSVSQYVLDQILS 1096
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+ + ++NIHE++ + T + V + I K+L K P
Sbjct: 1097 GE-----PTEVVVENIHEYLTTLSTSIRTNQVKVEEFIIFKRLGKNP 1138
Score = 118 bits (296), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/177 (35%), Positives = 98/177 (55%), Gaps = 10/177 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR-----SEH 266
FR F+LD E G +Y GK K + SCCV V N+ R +++LPR E
Sbjct: 342 FRFFWLDYLE----HEGVLYFIGKTLDKTTKAWVSCCVAVNNLQRNLFVLPREKRQDGEG 397
Query: 267 LKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKC 325
+T + VYS+FDQ+ + I +K++ +++KYAF + VP + + +L+V Y
Sbjct: 398 YETDVVPGMKDVYSDFDQVRKKAGIKTWKAKFVKRKYAFGVADVPKEETSWLKVVYGFDE 457
Query: 326 PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEV 382
P +P+D++ FS VFG+ TS E L+++R+I GP W++ + SWCK EV
Sbjct: 458 PQIPTDVTSPNFSRVFGSNTSAFELLVIKRRIMGPCWIKVQKPHVEHQGASWCKMEV 514
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGG 156
DK K A ++K ++ G G K E AD +Y+ V+E +Y V R Q+DD+++DDG
Sbjct: 11 DKLAKLAEYKKARE--GGGRTWKDEEEAD--LYDVVTEDQYKSIVKGRLQKDDFVEDDGV 66
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKN 189
DGY+++G + + D ++E+HD+R K
Sbjct: 67 DGYMDNGMDDWTGG-GDSQDEEEEHDRRASKKT 98
>gi|71020891|ref|XP_760676.1| hypothetical protein UM04529.1 [Ustilago maydis 521]
gi|46100219|gb|EAK85452.1| hypothetical protein UM04529.1 [Ustilago maydis 521]
Length = 1667
Score = 338 bits (866), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 187/443 (42%), Positives = 270/443 (60%), Gaps = 52/443 (11%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ + + + + I ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 873 LMNFVRHCEVDTFFQMAIAAKVQILPLTKQLTNLAGNSWNKTLNGGRAERNEYILLHDFH 932
Query: 462 EKSYVLPDKQYGKNKKEGEETGE--------ANKGKGRKKAA----------YSGGLVLE 503
+ Y+ PDK KK+ ++ E +N G A+ + GGLV E
Sbjct: 933 RQKYICPDKISAWEKKQIQQAAELKAKARAKSNGGAADSSASTTAANSKKDKFKGGLVFE 992
Query: 504 PKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY-------- 552
PK+G +DK+I++MDFNSLYPSIIQE+NI FTT+ P + ++D +I
Sbjct: 993 PKRGLWDKYILVMDFNSLYPSIIQEFNIDFTTVERPPTQGIEDDEIGVAAATASSDTAGE 1052
Query: 553 --------------LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQ 598
+P V+ G+LP I +LV RRQVK+LMK + + L+Q++I+Q
Sbjct: 1053 AGADAAADVDKIPDVPSSDVEQGVLPRIIAQLVARRRQVKSLMKDKSATPSQLLQWNIKQ 1112
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSL 658
ALKLTANSMYGCLGF NSRF+A+PLAAL T KGREIL TK L E++ +VIYGDTDS+
Sbjct: 1113 LALKLTANSMYGCLGFENSRFYARPLAALTTFKGREILTATKDLAESMLLDVIYGDTDSV 1172
Query: 659 MISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
MI+ N +Y +IG + K N+ Y+ LE+DIDGV++ MLLL+KKKYAA+ + + G
Sbjct: 1173 MINTNATEYREALRIGQEFKKSVNERYRLLEIDIDGVFERMLLLQKKKYAAVLVDE--EG 1230
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
K S EIKG+D+ RR++S L+ +V+ QIL Q + + +++IHE++ I T
Sbjct: 1231 KR--STEIKGLDMKRREYSALSKNVSNYVLEQILSGQ-----ATELVVEHIHEYLSDIST 1283
Query: 779 DLDNGFVPLTLLEITKQLTKAPE 801
+ G V L I K+L K PE
Sbjct: 1284 KIKMGEVGLDDFIIYKRLGKNPE 1306
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 77/190 (40%), Positives = 112/190 (58%), Gaps = 9/190 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ K ++LD E + G VYL GKV K++ + SCC+ V I+R I+LLPRS+
Sbjct: 467 EDDKSLFFYWLDYLE---GENGIVYLVGKVKDKDSGRYVSCCLTVNGIERCIFLLPRSKQ 523
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
L+ T PV ++Y EF++++ ++ I F S+ + +KYAF GVP S Y+++RY
Sbjct: 524 LENGHETDRPVGEDEIYDEFEELSAKHGIKGFLSKWVTRKYAFEQAGVPAESNYMKIRYG 583
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE--KFPSRISWCKY 380
P LP D G TFS FGT TS E L+++R+I GPSWL+ A + + ISWCK
Sbjct: 584 FDEPQLPFDFKGKTFSKAFGTNTSPFELLVVKRRIFGPSWLKISNASLAEGSTPISWCKM 643
Query: 381 EVQCNQMEKI 390
EV + + I
Sbjct: 644 EVSIDDPKDI 653
>gi|334188684|ref|NP_201511.2| DNA polymerase alpha catalytic subunit [Arabidopsis thaliana]
gi|363548407|sp|Q9FHA3.2|DPOLA_ARATH RecName: Full=DNA polymerase alpha catalytic subunit
gi|332010917|gb|AED98300.1| DNA polymerase alpha catalytic subunit [Arabidopsis thaliana]
Length = 1524
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 202/447 (45%), Positives = 274/447 (61%), Gaps = 46/447 (10%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+VE I+ + +++M L+VLPL +Q+TN+ GN+ +TL G R++R E+ LLH FH
Sbjct: 780 LVELIECGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQRIEYYLLHTFH 839
Query: 462 EKSYVLPDK---------------QYGKNKKEGEE-----TGEANKGKG---RKKAAYSG 498
K ++LPDK Y + +E T E + KG +K AY+G
Sbjct: 840 SKKFILPDKISQRMKEIKSSKRRMDYAPEDRNVDELDADLTLENDPSKGSKTKKGPAYAG 899
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPK+G YDK+++L+DFNSLYPSIIQEYNICFTTIP +D LP Q
Sbjct: 900 GLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTIPRS--EDG-----VPRLPSSQT 952
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY---DIRQKALKLTANSMYGCLGFP 615
GILP ++ LV R+ VK MK+ + ++Y DIRQ+ALKLTANSMYGCLGF
Sbjct: 953 -PGILPKLMEHLVSIRKSVKLKMKK-----ETGLKYWELDIRQQALKLTANSMYGCLGFS 1006
Query: 616 NSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIG 674
NSRF+A+PLA L+T +GR+IL T LV+N LN EVIYGDTDS+MI ++D + V I
Sbjct: 1007 NSRFYAKPLAELITLQGRDILQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVKAIK 1066
Query: 675 NQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRR 734
+++ E NK Y+ L++D DG+YK MLLL+KKKYAA+ + + +GK E KGVD+VRR
Sbjct: 1067 SKVIQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKL-QFKDGKPCEDIERKGVDMVRR 1125
Query: 735 DWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITK 794
DWS L+ E G +S+IL S +D ++ IH + KI+ ++ NG V L ITK
Sbjct: 1126 DWSLLSKEIGDLCLSKIL-----YGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYVITK 1180
Query: 795 QLTKAPEGGKVCITQIRLSRNRRGRRR 821
LTK P +Q + R R+R
Sbjct: 1181 TLTKPPAAYPDSKSQPHVQVALRMRQR 1207
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 31/226 (13%)
Query: 212 FRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
R F LDA+E+ + GT+YLFGKV K +++ SCCV+V+NI R +Y +P +
Sbjct: 345 LRFFILDAYEEAFGASMGTIYLFGKV--KMGDTYKSCCVVVKNIQRCVYAIPNDSIFPSH 402
Query: 271 EPVSIAQ----------------------VYSEFDQIATQYKILDFKSRKIEKKYAFNLP 308
E + + Q + +E Q Q + +F +++ YAF P
Sbjct: 403 ELIMLEQEVKDSRLSPESFRGKLHEMASKLKNEIAQELLQLNVSNFSMAPVKRNYAFERP 462
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
VP +Y L++ YS K LP DL G++FS + G+ TS LE+ +L+RKI GP WL+
Sbjct: 463 DVPAGEQYVLKINYSFKDRPLPEDLKGESFSALLGSHTSALEHFILKRKIMGPCWLKISS 522
Query: 368 -AEKFPSR-ISWCKYEVQCNQMEKIR---SKQGLIYLIGIVEFIKF 408
+ PS +SWCK+EV + I S++ +++ +V I
Sbjct: 523 FSTCSPSEGVSWCKFEVTVQSPKDITILVSEEKVVHPPAVVTAINL 568
>gi|409040591|gb|EKM50078.1| hypothetical protein PHACADRAFT_213841 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1452
Score = 337 bits (865), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 184/407 (45%), Positives = 259/407 (63%), Gaps = 19/407 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ L + Y + + ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 748 LLTFVRHCELDAHYQMALAAKVQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFH 807
Query: 462 EKSYVLPDKQYGKNKKEGEETGE-------ANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
Y+ PDKQ+GK K E E K K+ Y GGLV EPK+G +DKFI+
Sbjct: 808 RLKYICPDKQWGK-KAEAVAKAENGDGEGEGGKKGKSKRDKYKGGLVFEPKRGLWDKFIL 866
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESR 574
+MDFNSLYPSIIQEYNI FTT V ++D D +P + G+LP I LV R
Sbjct: 867 VMDFNSLYPSIIQEYNIDFTT--VEPVEDEDGEDKIPEVPNQGTEQGVLPRLIATLVNRR 924
Query: 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
RQVK+LMK + L+Q+DI+Q ALKLTANSMYGCLGF SRF+A+PLAAL T KGRE
Sbjct: 925 RQVKSLMKDRKATQAQLLQWDIKQMALKLTANSMYGCLGFEYSRFYARPLAALTTFKGRE 984
Query: 635 ILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDG 694
IL +T+ L E+L +V+YGDTDS+ ++ NV + KI + K N YK LE+D+DG
Sbjct: 985 ILTHTRELAESLQLDVVYGDTDSVFVNSNVTELAEALKISAEFKKAVNDRYKLLEIDLDG 1044
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
V++ +LLL+KKKYAA+ K+ +G S E+KG+D+ RR++ L+ ++V+ QIL
Sbjct: 1045 VFQRLLLLQKKKYAAV---KVEDGTRT-SVEVKGLDMKRREYCALSKNVSQYVLEQILSG 1100
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + + ++N+HE++ + D+ G V L I K+L K PE
Sbjct: 1101 E-----ATETVVENVHEYLSTMSGDVRAGKVKLDEFIIFKRLGKNPE 1142
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR-------- 263
R F+LD E Y+ G +Y GK K+ SCCV V+N++R +++LPR
Sbjct: 342 LRFFWLDYLE--YE--GKLYFIGKTQDKKTRLWLSCCVTVENLERNLFILPRERRVEEDP 397
Query: 264 --SEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDL-SEYLEVR 320
E +T ++ VY +FD++ + I FK++ ++++YAF VP +++L+V
Sbjct: 398 ETGELYETDVTPTLQDVYGDFDRVRKKAGINGFKAKFVKRRYAFGEKDVPRTETQWLKVV 457
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
Y P + +++S FS VFGT TS E L+L+RKI GP WL+ + +SWCK
Sbjct: 458 YGFDQPQISANISSPNFSRVFGTTTSAFELLVLKRKIMGPCWLQIKKPVMEHKGVSWCKV 517
Query: 381 EVQCNQMEKI 390
E + I
Sbjct: 518 EATVTDPKDI 527
>gi|388583787|gb|EIM24088.1| hypothetical protein WALSEDRAFT_59081 [Wallemia sebi CBS 633.66]
Length = 1399
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 191/408 (46%), Positives = 260/408 (63%), Gaps = 19/408 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F+K + + + + + ++ +LPL Q+TN+ GN RTL GGRSERNEF+LLH FH
Sbjct: 685 LIHFVKHCEVDAVFNMALAAKVQILPLTRQLTNLAGNSWGRTLTGGRSERNEFILLHEFH 744
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKG--------KGRKKAAYSGGLVLEPKKGFYDKFI 513
+ + PDK +KK + A G KG +K + GGLV EPKKG +DK+I
Sbjct: 745 RQKMICPDKLSRFDKKAAQLEAAAENGDDEATTKKKGGRKDKFKGGLVFEPKKGLWDKYI 804
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
++MDFNSLYPSIIQEYNI FTT+ R D + +P G+LP I LV
Sbjct: 805 LVMDFNSLYPSIIQEYNIDFTTVE-RPEDDDNGEEKIPEIPAPGSGQGVLPKLIATLVNR 863
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+QVK LMK N + LMQ DIRQ ALKLTANSMYGCLGF SRF+A+PLAAL T KGR
Sbjct: 864 RKQVKNLMKDKNATPAKLMQLDIRQMALKLTANSMYGCLGFEGSRFYARPLAALTTFKGR 923
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL +T+ L E++ +V+YGDTDS+ I+ N YD K+ N+ K N YK LE+D+D
Sbjct: 924 EILTHTRELAESMQLDVVYGDTDSVFINSNAYSYDDALKVANEFKKHVNDRYKLLEIDLD 983
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
GV+K +LLL+KKKYAA+ K++ GK S EIKG+D+ RR++SQL+ ++V+ QIL
Sbjct: 984 GVFKRLLLLQKKKYAAI---KMAEGKE--STEIKGLDMKRREYSQLSKNVSQYVLDQILS 1038
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S + +++IH+++ ++ + NG VPL I K+L K PE
Sbjct: 1039 GD-----STEVVVEHIHDYLTEMGESIRNGKVPLDDYIINKRLGKDPE 1081
Score = 105 bits (261), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 10/192 (5%)
Query: 206 HENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSE 265
+++ R ++LD ED G V LFGK + E S V ++ I R ++++PR
Sbjct: 280 YDDDGCVRFYWLDYMEDH----GRVVLFGKAYDTEAKKWQSTSVTIEGIQRNLFVVPRQF 335
Query: 266 HL-----KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEV 319
L +T E V V++E + I KI + ++ +++ YAF VP + +++L+V
Sbjct: 336 KLDDDENETGEIVEKTDVFTEMESIRKASKIKSWAAKFVKRSYAFEEKDVPREETDWLKV 395
Query: 320 RYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCK 379
Y PA+P ++G TFSHVFGT+TS E +++R+I GP WL+ +A +WCK
Sbjct: 396 LYGFNEPAMPLGMTGKTFSHVFGTQTSPFELFVVKRRIMGPCWLKLEDAYVTQKGTTWCK 455
Query: 380 YEVQCNQMEKIR 391
++ + ++
Sbjct: 456 HQFTVTDPKTVQ 467
>gi|406864839|gb|EKD17882.1| DNA polymerase [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 1450
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 187/465 (40%), Positives = 283/465 (60%), Gaps = 14/465 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + +I + ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 744 GLMDYVGHCEADTFFIAALALKVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGKNKKE-GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
H Y+ PDK K K + EE + G +KK Y GGLV EP+KG YDKF+++MDFN
Sbjct: 804 HRNKYICPDKAVFKGKHQIEEENADEESGDVKKKDKYKGGLVFEPEKGLYDKFVLVMDFN 863
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVD--TGILPSEIKKLVESRRQV 577
SLYPSIIQE+NICFTT+ L + + E +PE VD G+LP I LV RR+V
Sbjct: 864 SLYPSIIQEFNICFTTVDRLNLSNDE-----EQVPEVPVDQDLGVLPKLIATLVSRRREV 918
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK +++ L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 919 KKLMKDKTATTEQLSTWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILR 978
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ + +VIYGDTDS+MI+ NV++ ++G + K N+ Y+ LE+DID V++
Sbjct: 979 STKDLAESNSLQVIYGDTDSVMINANVDNVKDALRVGEEFKKAVNERYRLLEIDIDNVFR 1038
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA+++ ++ +GK + E+KG+D+ RR++ L+ E V +++LDE
Sbjct: 1039 RILLQAKKKYAAINLVQV-DGKYVDKMEVKGLDMKRREYCNLSKE----VSAKLLDEILS 1093
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRR 817
D ++ + IH+++++I T + G VP I +L KAP+ + ++ R
Sbjct: 1094 GD-DMELVVTRIHDYLREISTKMREGAVPTHKYTIYTKLGKAPQDYPQADSMPQVQVALR 1152
Query: 818 GRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGG 862
R + +K++ + G G+ G + + + E G
Sbjct: 1153 ELSRGKTVRKDDVIAYIVTGDGKNSSEGPAKRSYTPQDVSKAESG 1197
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/187 (36%), Positives = 99/187 (52%), Gaps = 10/187 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
MF+ D E G++ LFGKV K + S SC + V NI RK++ LPR +
Sbjct: 342 LHMFWTDYTE----VNGSLCLFGKVQNKTDRSFVSCFLKVDNILRKLFFLPREYRQRGGR 397
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T + V + VY E D++ + ++ K + +KYAF LP +P EYL++ Y P
Sbjct: 398 DTTDEVEMKDVYEEVDELMGKMRVGMHKIKPCTRKYAFELPDIPREGEYLKLLYPYSKPQ 457
Query: 328 L-PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCN 385
L P +G TFSHVFGT T E +L + I GP WL+ +AE + S+CK EVQ +
Sbjct: 458 LQPEHQTGTTFSHVFGTNTPLFEQFVLWKNIMGPCWLKIEDAEFGVLNNASYCKLEVQVS 517
Query: 386 QMEKIRS 392
+ I +
Sbjct: 518 KPNLITA 524
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 106 FQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVED 162
F +L+ LK G K Y+ +E++YEEV E Y + V R +DD++ DD G+GY +D
Sbjct: 11 FAELRALKASGKKRLDTYQVQEEEDLYEEVDEDGYKKVVRDRLNQDDFVIDDNGEGYADD 70
Query: 163 GREIFD 168
GRE +D
Sbjct: 71 GREEWD 76
>gi|359480801|ref|XP_002277947.2| PREDICTED: DNA polymerase alpha catalytic subunit-like [Vitis
vinifera]
Length = 1522
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 204/430 (47%), Positives = 273/430 (63%), Gaps = 45/430 (10%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+V+ I++ + +++M L+VLPL +TN+ GN+ +TL G R++R E+LLLH FH
Sbjct: 776 LVQLIEYGETDAWLSMELMFHLSVLPLTRLLTNISGNLWGKTLQGARAQRVEYLLLHEFH 835
Query: 462 EKSYVLPDK----------------QYGKNKKEGEE-----------TGEANKGKGRKKA 494
K Y++PDK Q G + +E N+GKG+K
Sbjct: 836 AKKYIVPDKISSHLRETKWTKRRMNQGGAEDRNIDELDVDDAHVENDAHHNNQGKGKKGP 895
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLP 554
AYSGGLVLEPK+G YDK+I+L+DFNSLYPSIIQEYNICFTT V D + LP
Sbjct: 896 AYSGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTT--VERSPDGSVPR----LP 949
Query: 555 EHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLG 613
+ TG+LP +KKLVE R+ VK+ +K +S L + Q DI+Q+ALKLTANSMYGCLG
Sbjct: 950 SSKT-TGVLPELLKKLVERRKTVKSRLKT---ASGLKVQQLDIQQQALKLTANSMYGCLG 1005
Query: 614 FPNSRFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFK 672
F NSRF+A+PLA L+T +GREIL +T LV+ NLN EVIYGDTDS+MI ++D
Sbjct: 1006 FSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYTGLDDITKAKA 1065
Query: 673 IGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVV 732
I ++ E NK Y+ LE+D+DG+YK MLLLKKKKYAA+ + + +G E KG+D+V
Sbjct: 1066 IAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKL-QFKDGTPYEVIERKGLDMV 1124
Query: 733 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEI 792
RRDWS L+ E G F +SQIL + S +D +++IH + K++ D+ NG V L I
Sbjct: 1125 RRDWSLLSKELGDFSLSQIL-----SGGSCEDVVESIHNSLMKVQEDMRNGEVALEKYII 1179
Query: 793 TKQLTKAPEG 802
TK LTK PE
Sbjct: 1180 TKSLTKPPEA 1189
Score = 112 bits (281), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 28/204 (13%)
Query: 214 MFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEP 272
+ LDA E+ Y G +YLFGKV K +++ SCCV+V+N++R +Y +P E
Sbjct: 342 FYILDAHEEFYGANMGNLYLFGKV--KAGSAYHSCCVVVKNMERCVYAIPNDSVFGNDEI 399
Query: 273 -----------VSIAQVYSEFDQIATQYK-----------ILDFKSRKIEKKYAFNLPGV 310
VS A + ++ +A+ K + F +++ YAF +
Sbjct: 400 MRLEKDIEASRVSPAALRTKLQDVASGLKNEIAKQLLNLNVSTFSMTPVKRSYAFERADI 459
Query: 311 PDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE 369
P Y L++ Y K P LP+DL G+ F + GT S LE L++RKI GP WL +
Sbjct: 460 PVGENYVLKINYPFKDPPLPADLKGEAFCALLGTHCSALELFLIKRKIMGPYWLSISKFS 519
Query: 370 KFPS--RISWCKYEVQCNQMEKIR 391
P+ R+SWCK+EV + + IR
Sbjct: 520 SCPAPERVSWCKFEVTVDCPKDIR 543
Score = 39.7 bits (91), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHK---YEFTADENVYEEVSEKEYTERVLKRQED--DWID 152
+ T + A Q+LK L+ G + ++ ++ +Y+ V E EY + V KR+E+ +I
Sbjct: 18 EATARSDALQRLKALRRGGRRSDGVGFQIKVEDPIYDTVDEDEYDKLVAKRREEFRGFIV 77
Query: 153 DDGGDGYVEDGREIFDDDIEDVPQKKEKHD 182
DD G GY ++G+E D + VP ++ D
Sbjct: 78 DDNGSGYGDEGQE-EDWSLAGVPPSSDESD 106
>gi|403415899|emb|CCM02599.1| predicted protein [Fibroporia radiculosa]
Length = 1470
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 180/407 (44%), Positives = 260/407 (63%), Gaps = 19/407 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ L + Y + + ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 768 LLTFVRHCELDAHYQMALASKVQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFH 827
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAA------YSGGLVLEPKKGFYDKFIIL 515
Y+ PDK +GK E+ + + +G KA Y GGLV EPK+G +DKFI++
Sbjct: 828 RLKYICPDKLWGKKAATAEKEMQDDDLEGGGKATKSKRDKYKGGLVFEPKRGLWDKFILV 887
Query: 516 MDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRR 575
MDFNSLYPSIIQEYNI FTT V ++D D P V G+LP I LV RR
Sbjct: 888 MDFNSLYPSIIQEYNIDFTT--VDRVEDEDGEEKIPEPPSSDVALGVLPRLIATLVGRRR 945
Query: 576 QVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREI 635
QVK+LMK + L+Q+DI+Q ALKLTANSMYGCLGF SRF+A+PLAAL T KGREI
Sbjct: 946 QVKSLMKDRKATQSQLLQWDIKQMALKLTANSMYGCLGFEYSRFYARPLAALTTFKGREI 1005
Query: 636 LLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGV 695
L +T+ L E+L +V+YGDTDS+ ++ NV D KI ++ K N Y+ LE+D+DG+
Sbjct: 1006 LTHTRELAESLQLDVVYGDTDSVFVNSNVTDLAEALKISSEFKKAVNDRYRLLEIDLDGI 1065
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD-E 754
++ +LLL+KKKYAA+ K+ +G S E+KG+D+ RR++ L+ ++V+ QIL E
Sbjct: 1066 FQRLLLLQKKKYAAI---KVEDGTRT-STEVKGLDMKRREYCNLSKNVSQYVLDQILSGE 1121
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
++ T ++ +H+++ + D+ G + L + K+L K PE
Sbjct: 1122 ETET------VVERVHDYLTTMGEDVRAGKIKLEDFIVFKRLGKNPE 1162
Score = 106 bits (264), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
FR ++LD E G +YL GK K + + SCCV ++N+ R +++LPR ++
Sbjct: 362 FRFYWLDYLE----HEGRLYLVGKTQDKVSRTWISCCVTIENLQRNLFVLPRERKMEEDD 417
Query: 269 -------TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVR 320
T ++ V+S+FD+I I +K + ++++YAF VP S++ +V
Sbjct: 418 ETGKLYETDVVPDMSDVFSDFDRIRKHAGIKSWKGKFVKRRYAFGEKDVPKGESQWFKVV 477
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
Y + P LP++ + + +FGT TS E L+L+RKI GP WL+ + + +SWCK
Sbjct: 478 YGFEEPQLPNNACSPSIARIFGTSTSAFELLVLKRKIMGPCWLQIKKPQVEHKGVSWCKM 537
Query: 381 EVQCNQMEKI 390
E + + I
Sbjct: 538 ETTVSDPKDI 547
>gi|321259786|ref|XP_003194613.1| DNA polymerase alpha catalytic subunit [Cryptococcus gattii WM276]
gi|317461085|gb|ADV22826.1| DNA polymerase alpha catalytic subunit, putative [Cryptococcus gattii
WM276]
Length = 1484
Score = 336 bits (862), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 187/407 (45%), Positives = 262/407 (64%), Gaps = 18/407 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++FI+ + + + + I + +LPL Q+TN+ GN + TL GGR+ RNEF+LLH FH
Sbjct: 781 LIKFIRLCEVDAFFQMAIAARVQILPLTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFH 840
Query: 462 EKSYVLPDKQYGKNKK-------EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
YV PDK K K EG E A KG+ R KA Y+GGLV EPK+G +DK+II
Sbjct: 841 RLEYVCPDKAPYKVKTRPTGDDDEGTEDIIAMKGQ-RGKAKYAGGLVFEPKRGLWDKYII 899
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESR 574
+MDFNSLYPSIIQEYNI FTT+ ++++ + + +P V G+LP I LV R
Sbjct: 900 IMDFNSLYPSIIQEYNIDFTTVDRDEDENAEEEKIPD-VPSSDVPQGVLPRIIATLVNRR 958
Query: 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
RQVKALMK + S L+QYDI+Q+ALKLTANSMYGCLGF SRF ++PLAAL T KGRE
Sbjct: 959 RQVKALMKDKSSSPAKLLQYDIKQQALKLTANSMYGCLGFAGSRFSSRPLAALTTFKGRE 1018
Query: 635 ILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDG 694
IL +T+ L E+L +V+YGDTDS+ ++ NV Y KI N+ K N+ YK LE+D+D
Sbjct: 1019 ILTHTRELAESLQLDVVYGDTDSVFVNSNVTTYPEALKIANEFKKLVNERYKLLEIDLDA 1078
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
V++ +LLL KKKYAA+ I + S E+KG+D+ RR++S+++ +A V+ +IL
Sbjct: 1079 VFERILLLNKKKYAAVKIDEAGER----STEVKGLDMKRREFSKVSKDASAAVLKEILSG 1134
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + + ++ IHE + K+ + N +P+ I K+L K PE
Sbjct: 1135 E-----ATEVVVEKIHELLTKLGEAVRNNDIPIDDYIIFKRLGKNPE 1176
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 96/175 (54%), Gaps = 9/175 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R F+LD E Q G V+L GKV K+ + S CV+V I+R +YL PR++
Sbjct: 383 LRFFWLDHLE----QDGVVHLVGKVLDKQTGKYVSACVLVTGIERCLYLKPRAKRFVRGF 438
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCP 326
+T VS V EF+ +Q I ++ + +++KYAF V S++LEV Y P
Sbjct: 439 ETDLDVSEEDVLDEFESFRSQVGIDQYRCKFVKRKYAFEDKDVEKGESDWLEVVYGFDQP 498
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
+P D+SG TFSH+FGT T+ E ++ +KI GPSWLE + SWCK E
Sbjct: 499 TIPMDVSGATFSHIFGTNTTPFELFVVNQKIMGPSWLEIKDIAPSEKASSWCKLE 553
>gi|313241438|emb|CBY33693.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 193/361 (53%), Positives = 248/361 (68%), Gaps = 34/361 (9%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
I + LPLA+QITN+CGN+LSRTL GR+ERN +LLLHAFH+K + LP Y KK+
Sbjct: 238 ISSNIQSLPLAVQITNICGNILSRTLSRGRAERNAYLLLHAFHKKDH-LPPPPY---KKK 293
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
E G+ +K ++GG+VLEPKKG Y +I+L+DFNSLYPSIIQEYNICFTT +
Sbjct: 294 TVEDGD------KKGPKFAGGMVLEPKKGLYTNYILLLDFNSLYPSIIQEYNICFTTTAM 347
Query: 539 RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQ 598
+ D LP+ ++ GILP EIKKLV R++VK L+K ++D L + +IRQ
Sbjct: 348 QAPPD---------LPK-TMEEGILPFEIKKLVNRRKEVKKLIKNEK-NADELARLNIRQ 396
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSL 658
LKLTANSMYGCLGF SRF AQPLAALVTAKGREIL TK VE +N EV+YGDTDS+
Sbjct: 397 LGLKLTANSMYGCLGFTASRFCAQPLAALVTAKGREILEATKVFVEKMNLEVVYGDTDSI 456
Query: 659 MISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
MI+ N + V K+GN +K E NK Y+ LE+DIDG YK MLLLKKKKYAA+ NG
Sbjct: 457 MINSNSTNISEVMKLGNLVKKEVNKHYRLLEIDIDGAYKSMLLLKKKKYAAID----QNG 512
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
K +E KG+D+VRRDWS++A G+ ++ +L EQ ++ ++ IHEH++ I T
Sbjct: 513 K----EEFKGLDIVRRDWSEIARNEGRTILKLLLHEQDE-----EEGVRKIHEHLEMIGT 563
Query: 779 D 779
+
Sbjct: 564 E 564
>gi|219114300|ref|XP_002176321.1| catalytic subunit p180 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402724|gb|EEC42713.1| catalytic subunit p180 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1147
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 192/403 (47%), Positives = 264/403 (65%), Gaps = 23/403 (5%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
IV+ T+ + I + +L VLPL+ Q+T V GN+ S TL R+ER E+LLLH FH
Sbjct: 423 IVQLALSTLFDAQLIQTLALKLQVLPLSHQLTCVAGNLWSHTLKSNRAERTEYLLLHEFH 482
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
+ P+K A K +G KA Y+GGLVLEPKKG YD +I+L+DFNSL
Sbjct: 483 RLQTLPPEKH------------RALKDEGGSKAKYAGGLVLEPKKGLYDSYILLLDFNSL 530
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
YPSIIQEYN+CFTT+ L ++ L + LP+ + D G+LP I+ LVE RR VK L+
Sbjct: 531 YPSIIQEYNLCFTTLDWAGLAGTEDNVLPD-LPDTEADRGVLPRVIQSLVERRRTVKKLL 589
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K ++ + DIRQKALKLTANSMYGCLGF NSRFFAQP+AAL+T+ GREIL T
Sbjct: 590 KS-ETNAVRKEELDIRQKALKLTANSMYGCLGFSNSRFFAQPIAALITSMGREILQRTVD 648
Query: 642 LVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKI---GNQIKSECNKLYKQLELDIDGVYK 697
+ + + +VIYGDTDS+MI+ +ND + + K+ G ++K E N+LY+ LEL+IDG+++
Sbjct: 649 IAQQKVGLDVIYGDTDSIMINTRINDENDLPKVKELGERVKKEVNRLYRTLELEIDGIFR 708
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
MLLLKKKKYAA ++ + NG++ QE+KG+D+VRRDW + + G++V QIL Q
Sbjct: 709 SMLLLKKKKYAAKTVEEGPNGEVKYGQELKGLDLVRRDWCIQSKDTGRYVTEQILSGQES 768
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
D ++NIH H++++ T + G +PL ITK L+K P
Sbjct: 769 -----DIVIENIHSHLEELATKMRAGNLPLEKYTITKGLSKHP 806
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 28/193 (14%)
Query: 216 FLDAF-EDIYKQ-PGTVYLFGKV-----FVKENNSHSSCCVIVQNIDRKIYLLPR----- 263
+LD + D+ +Q G ++LFGKV + + S S CV+VQ+ R +Y+LPR
Sbjct: 4 YLDLYWTDLCEQRNGDLWLFGKVRQPTTTTEASPSFVSACVVVQHNMRNLYVLPRQTASG 63
Query: 264 SEHLKTKEPVSIAQVYSEFDQIATQYKI-----LDFKSRKIEKKYAFNLPGVP-DLSEYL 317
S+ K + V+ E + + + + S+ ++ YAF+ P VP + YL
Sbjct: 64 SDDAKEDVEPDLQAVHGEVKSLLQTHVLPKTAGTSWASKPVQLTYAFDDPTVPRSATTYL 123
Query: 318 EVRYSAKCPALPSDLS------GDTFSHVFGTKTSFLENLLLERKIKGPSWLEF--PEAE 369
+V Y AK PALP+D++ D + +F + S E L++R+I+GPSWL P A
Sbjct: 124 QVLYDAKYPALPADVAHPAGSVSDNIARIFNAQASITETFLVQRRIQGPSWLRLRAPRAT 183
Query: 370 KFPSRISWCKYEV 382
P +SWC EV
Sbjct: 184 TAP--VSWCALEV 194
>gi|2826900|dbj|BAA24573.1| DNA polymerase alpha catalytic subunit [Oryza sativa]
Length = 1243
Score = 335 bits (860), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 276/425 (64%), Gaps = 41/425 (9%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+++ +++ + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLHAF
Sbjct: 492 ALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAF 551
Query: 461 HEKSYVLPDK-----QYGKNKKEGEETGEA-----------------NKGKGRKKAAYSG 498
H + +++PDK ++ K++ EA ++GK +K +Y+G
Sbjct: 552 HARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQGKTKKGPSYAG 611
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPKKG YDK+++L+DFNSLYPSIIQEYNICFTT V D ++ LP +
Sbjct: 612 GLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT--VDRSADGNVPN----LPASKT 665
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNS 617
TG+LP +K LVE RR VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF NS
Sbjct: 666 -TGVLPELLKSLVERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYGCLGFSNS 721
Query: 618 RFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
RF+A+PLA L+T +GREIL NT LV+ NLN EVIYGDTDS+MI ++D I +
Sbjct: 722 RFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGK 781
Query: 677 IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDW 736
+ E NK Y+ LE+D+DG+YK MLLLKKKKYAA+ ++ +G + + E KG+D+VRRDW
Sbjct: 782 VIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDW 839
Query: 737 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
S L+ E G F ++QIL + S DD +++IH + +++ + G L ITK L
Sbjct: 840 SLLSKEIGDFCLNQIL-----SGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSL 894
Query: 797 TKAPE 801
TKAPE
Sbjct: 895 TKAPE 899
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 103/202 (50%), Gaps = 27/202 (13%)
Query: 214 MFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL----- 267
+ LDA+E+ + GTVYLFGKV V + SCCV+V+N+ R IY +P S
Sbjct: 60 FYILDAYEEPFGANSGTVYLFGKVEVGKR--FHSCCVVVKNMQRCIYAIPSSSIFPRDTI 117
Query: 268 ---------KTKEPVSIAQVY-------SEFDQIATQYKILDFKSRKIEKKYAFNLPGVP 311
P A ++ SE + + + +F +++ YAF +P
Sbjct: 118 SRLEKNSTTSDSSPSLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERTDLP 177
Query: 312 DLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEK 370
+ +Y L++ Y K ALP+DL G F + GT S LE LL++RKIKGPSWL +
Sbjct: 178 NGEQYVLKINYPYKDSALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFLA 237
Query: 371 FPS--RISWCKYEVQCNQMEKI 390
P+ R+SWCK+EV + + I
Sbjct: 238 CPATQRVSWCKFEVTVDSPKDI 259
>gi|115441281|ref|NP_001044920.1| Os01g0868300 [Oryza sativa Japonica Group]
gi|113534451|dbj|BAF06834.1| Os01g0868300, partial [Oryza sativa Japonica Group]
Length = 1244
Score = 335 bits (859), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 276/425 (64%), Gaps = 41/425 (9%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+++ +++ + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLHAF
Sbjct: 498 ALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAF 557
Query: 461 HEKSYVLPDK-----QYGKNKKEGEETGEA-----------------NKGKGRKKAAYSG 498
H + +++PDK ++ K++ EA ++GK +K +Y+G
Sbjct: 558 HARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQGKTKKGPSYAG 617
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPKKG YDK+++L+DFNSLYPSIIQEYNICFTT V D ++ LP +
Sbjct: 618 GLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT--VDRSADGNVPN----LPASKT 671
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNS 617
TG+LP +K LVE RR VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF NS
Sbjct: 672 -TGVLPELLKSLVERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYGCLGFSNS 727
Query: 618 RFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
RF+A+PLA L+T +GREIL NT LV+ NLN EVIYGDTDS+MI ++D I +
Sbjct: 728 RFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGK 787
Query: 677 IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDW 736
+ E NK Y+ LE+D+DG+YK MLLLKKKKYAA+ ++ +G + + E KG+D+VRRDW
Sbjct: 788 VIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDW 845
Query: 737 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
S L+ E G F ++QIL + S DD +++IH + +++ + G L ITK L
Sbjct: 846 SLLSKEIGDFCLNQIL-----SGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSL 900
Query: 797 TKAPE 801
TKAPE
Sbjct: 901 TKAPE 905
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 104/202 (51%), Gaps = 27/202 (13%)
Query: 214 MFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL----- 267
+ LDA+E+ + GTVYLFGKV V + SCCV+V+N+ R IY +P S
Sbjct: 66 FYILDAYEEPFGANSGTVYLFGKVEVGKR--FHSCCVVVKNMQRCIYAIPSSSIFPRDTI 123
Query: 268 ---------KTKEPVSIAQVY-------SEFDQIATQYKILDFKSRKIEKKYAFNLPGVP 311
P A ++ SE + + + +F +++ YAF +P
Sbjct: 124 SRLEKNSTTSDSSPSLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERTDLP 183
Query: 312 DLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEK 370
+ +Y L++ Y K PALP+DL G F + GT S LE LL++RKIKGPSWL +
Sbjct: 184 NGEQYVLKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISKFLA 243
Query: 371 FPS--RISWCKYEVQCNQMEKI 390
P+ R+SWCK+EV + + I
Sbjct: 244 CPATQRVSWCKFEVTVDSPKDI 265
>gi|392575421|gb|EIW68554.1| hypothetical protein TREMEDRAFT_31892 [Tremella mesenterica DSM 1558]
Length = 1468
Score = 335 bits (858), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 180/405 (44%), Positives = 257/405 (63%), Gaps = 18/405 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++FI+ + S + + I + +LPL Q+TN+ GN + TL GGR+ RNEF+LLH FH
Sbjct: 761 LIKFIRLCEVDSYFQMAIAARVQMLPLTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFH 820
Query: 462 EKSYVLPDKQYGKNKK-----EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
YV PDK + K + E EE A +GK A Y+GGLV +PKKG +D +I++M
Sbjct: 821 RLKYVCPDKTFKKTRTITMEDEDEEVPMAKRGK----AKYAGGLVFDPKKGLWDTYILVM 876
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
DFNSLYPSIIQEYNI FTT+ + + +P ++ G+LP I LV R+Q
Sbjct: 877 DFNSLYPSIIQEYNIDFTTVEREPVDEEGEEDKIPDVPGGEIPQGVLPRIIATLVGRRKQ 936
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VKALMK N ++ L QYDIRQ+ALKLTANSMYGCLGF SRF ++PLAAL T KGREIL
Sbjct: 937 VKALMKDKNATAAQLQQYDIRQQALKLTANSMYGCLGFQGSRFSSRPLAALTTYKGREIL 996
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
+T+ L E+L +V+YGDTDS+ ++ NV Y KI N K N+ Y+ LE+D+D V+
Sbjct: 997 THTRELAESLQLDVVYGDTDSVFVNSNVTSYPEALKIANDFKKLVNERYRLLEIDLDAVF 1056
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
+ +LLL KKKYAA+ I + + E+KG+D+ RR++++++ +A V+ +IL Q
Sbjct: 1057 ERILLLNKKKYAAVKIDASGDK----TTEVKGLDMKRREFAKISKDASAAVLKEILSGQ- 1111
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + ++ IHE++ + + +G +PL I K+L K PE
Sbjct: 1112 ----ATEVVVEKIHEYLTSLGETVRSGGIPLEDFIIFKRLGKNPE 1152
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 9/189 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E RMF+LD E Q G V+L GKV +++ + S CV V I R +++ PR +
Sbjct: 358 EEDGTLRMFWLDFIE----QDGVVHLVGKVLDRQSGKYVSACVSVNGIQRNLFVKPRPKR 413
Query: 267 L----KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRY 321
+T V+ VY +FD+ + + ++ ++ +++KYAF VP SE+L+V Y
Sbjct: 414 FSGGHETDLEVTKTDVYQDFDKARQKAGVEEWAAKFVQRKYAFEEKDVPKGESEWLKVVY 473
Query: 322 SAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
P +P D G TFS VFGT TS E L+++RKI GP WLE SWCK E
Sbjct: 474 GFDQPEMPMDCQGPTFSRVFGTNTSAFELLVIKRKIMGPCWLEIKGPVLSTKATSWCKIE 533
Query: 382 VQCNQMEKI 390
+ + +
Sbjct: 534 FHTSSPKNV 542
Score = 39.7 bits (91), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGG 156
++ ++FAA +K + G+ + K D +Y+ VS+++Y V R E DD+I DD G
Sbjct: 4 NRADRFAALKKARKEGGRLSQWK---PGDGEIYDTVSDEQYRSIVGDRLEKDDFIVDDDG 60
Query: 157 DGYVEDG 163
+GYV++G
Sbjct: 61 NGYVDNG 67
>gi|392589707|gb|EIW79037.1| hypothetical protein CONPUDRAFT_126817 [Coniophora puteana RWD-64-598
SS2]
Length = 1433
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 184/413 (44%), Positives = 258/413 (62%), Gaps = 25/413 (6%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ L + Y + I ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 722 LMTFVRHCELDAHYQMAIASKVQILPLTRQLTNLAGNAWNKTLNGGRAERNEYILLHEFH 781
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAA-------------YSGGLVLEPKKGF 508
Y+ PDK YGK K E EA++ G Y GGLV EPK+G
Sbjct: 782 RLKYICPDKTYGKKVKPEPEPDEADEEGGNAAGGGGGGKASKAKRDKYKGGLVFEPKRGL 841
Query: 509 YDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
+DKFI++MDFNSLYPSIIQEYNI FTT+ R + D D P V G+LP I
Sbjct: 842 WDKFILVMDFNSLYPSIIQEYNIDFTTVE-RQVDDPDDKI--PEPPSSDVAQGVLPRLIA 898
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
LV RRQVK+LMK + + L+QYDI+Q+ALKLTANSMYGCLGF SRF+A+PLAAL
Sbjct: 899 TLVSRRRQVKSLMKDKSATPAKLLQYDIKQQALKLTANSMYGCLGFEYSRFYARPLAALT 958
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL +T+ L E+L +V+YGDTDS+ ++ NV + KI N+ K N Y+ L
Sbjct: 959 TFKGREILTHTRELAESLQLDVVYGDTDSVFVNSNVTELSEALKISNEFKKAVNDRYRLL 1018
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+D+DGV+ +LLL+KKKYAA+ + S S EIKG+D+ RR++ L+ ++V+
Sbjct: 1019 EIDLDGVFARLLLLQKKKYAAIKVEDGSR----TSTEIKGLDMKRREYCALSKNVSQYVL 1074
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL + + + ++ IHE++ + ++ +G + + I K+L K PE
Sbjct: 1075 DQILSGE-----ATEIVVEQIHEYLTSVSENVRSGKIKVDDFIIFKRLGKNPE 1122
Score = 103 bits (257), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 105/217 (48%), Gaps = 30/217 (13%)
Query: 188 KNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSC 247
KN N A+D +LP F+LD E G ++L GKV + + +S
Sbjct: 305 KNTINALAEDGTLPF------------FWLDFLE----LSGKLFLTGKVKDRTTGAWASA 348
Query: 248 CVIVQNIDRKIYLLPRSEHLK-------------TKEPVSIAQVYSEFDQIATQYKILDF 294
C+ ++ + R +Y+LPR ++ T+ P S A VY +FD+I + I F
Sbjct: 349 CLSIEGLQRNLYVLPRQLRVEQVEDEDGEVSLQETEHPPSRADVYGDFDRIRQRLDIKSF 408
Query: 295 KSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP-ALPSDLSGDTFSHVFGTKTSFLENLLL 353
K++ + + YAF+ VP +E+L+V Y + P +P D + +FGT TS E +L
Sbjct: 409 KAKWVRRSYAFDEKDVPKEAEWLKVLYPFEDPHQVPMDAQSPNIARIFGTNTSAFELFVL 468
Query: 354 ERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKI 390
+RKI GP WL A ISWCK E + + +
Sbjct: 469 KRKIMGPCWLNVRNAVVENKGISWCKLEASVSDPKDV 505
>gi|400595091|gb|EJP62901.1| DNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1462
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 181/400 (45%), Positives = 260/400 (65%), Gaps = 9/400 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + YI + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 745 GLMDYITHMEADTHYIAALAISVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 804
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
H Y+ PDKQ + +++ E E G+G+KK + GGLV EP+KG YDKF+++MDFNS
Sbjct: 805 HRNKYICPDKQIFRGRQKASEENEDEAGQGKKKDKFKGGLVFEPEKGLYDKFVLVMDFNS 864
Query: 521 LYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
LYPSIIQE+NICFTT+ +L + D +P+ Q D GILP I LV RRQVK+L
Sbjct: 865 LYPSIIQEFNICFTTVDRTILSEDD--DAVPEVPKDQ-DQGILPKLISTLVGRRRQVKSL 921
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK N +++ L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +TK
Sbjct: 922 MKDKNATAEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREILRSTK 981
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
L E+ + +VIYGDTDS+MI+ NV+ FK+GN K N+ Y+ LE+DID V++ +L
Sbjct: 982 ELAESRSLQVIYGDTDSVMINANVDSVADAFKVGNDFKRAVNEQYRLLEIDIDNVFRRIL 1041
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
L KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E K ++ +IL +
Sbjct: 1042 LQAKKKYAAINLVE-KDGKFIEKMEVKGLDMRRREYCALSKEISKRLLDEIL-----SGA 1095
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
++ + IHE+++ + +P+ I QL K P
Sbjct: 1096 ETEEAVSRIHEYLRDTAAKMREQTIPVAKYIIFTQLGKGP 1135
Score = 123 bits (308), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 101/174 (58%), Gaps = 10/174 (5%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TK 270
FF + +I+ G++ LFGKV K+N + SC V V NI RK+Y LPR L+ T
Sbjct: 345 FFWTDYTEIH---GSLCLFGKVLNKKNQEYVSCFVKVDNILRKLYFLPREHRLRDGEETD 401
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
E V + VY+E D + T+ + +K + +KYAF LPGVP ++Y+++ Y + S
Sbjct: 402 ESVEMMDVYNEVDDLMTKMNVGMYKIKACTRKYAFELPGVPKEAQYMKLLYPYTKQQIDS 461
Query: 331 DLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
+ G+TFSHVFG+ T+ E +L + + GP WL+ +A+ F + S CK EV
Sbjct: 462 SIIGETFSHVFGSNTALFEQFVLWKNVMGPCWLKIEDAD-FGAIKNASHCKLEV 514
Score = 48.5 bits (114), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 15/118 (12%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDD 153
+ K N A +LK L+ G K Y+ +Y+EV E Y + V R +DD++ D
Sbjct: 1 MSKVNHRAKLAELKALRKAGKKAFDSYQVEDVNALYDEVDEDGYKKIVRDRLNQDDFVVD 60
Query: 154 DGGDGYVEDGREIFD--------DDIEDVP----QKKEKHDKRKKNKNIQNPNAKDDS 199
D G+GY +DGRE +D D+ED+P Q K K R+ + +++ N ++ S
Sbjct: 61 DNGEGYADDGREDWDRVRQYDSESDLEDLPTRGRQSKSKKASRQAEQAMRDVNDRNIS 118
>gi|343425417|emb|CBQ68952.1| related to POL1-DNA-directed DNA polymerase alpha, 180 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1671
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 186/448 (41%), Positives = 270/448 (60%), Gaps = 58/448 (12%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ + + + + I ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 871 LMTFVRHCEVDTFFQMAIAAKVQILPLTKQLTNLAGNSWNKTLNGGRAERNEYILLHDFH 930
Query: 462 EKSYVLPDKQYGKNKKEGEETGE-------------------ANKGKGRKKAAYSGGLVL 502
+ Y+ PDK KK+ ++ E + KK + GGLV
Sbjct: 931 RQKYICPDKISAWEKKQIQQAAELKAKARAKSGAGGAGGAAASGTAVSSKKDKFKGGLVF 990
Query: 503 EPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQD---------------- 543
EPK+G +DK+I++MDFNSLYPSIIQE+NI FTT+ P + L+D
Sbjct: 991 EPKRGLWDKYILVMDFNSLYPSIIQEFNIDFTTVERPPTQGLEDAEVAAPAAAATAASTS 1050
Query: 544 ----------SDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ 593
+D+ + + +P V+ G+LP I +LV RRQVK+LMK + LMQ
Sbjct: 1051 GEGETAVDAVADVDKIPD-IPSSDVEQGVLPRIIAQLVARRRQVKSLMKDKTATPSQLMQ 1109
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG 653
++I+Q ALKLTANSMYGCLGF NSRF+A+PLAAL T KGREIL TK L E++ +VIYG
Sbjct: 1110 WNIKQLALKLTANSMYGCLGFENSRFYARPLAALTTFKGREILTATKDLAESMLLDVIYG 1169
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
DTDS+MI+ N +Y +IG + K N+ Y+ LE+DIDGV++ MLLL+KKKYAA+ +
Sbjct: 1170 DTDSVMINTNATEYREALRIGQEFKKSVNERYRLLEIDIDGVFERMLLLQKKKYAAVLVD 1229
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ +GK S EIKG+D+ RR++S L+ +V+ QIL Q + + +++IHE++
Sbjct: 1230 E--DGKR--STEIKGLDMKRREYSALSKNVSNYVLDQILSGQ-----ATELVVEHIHEYL 1280
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + G V L I K+L K PE
Sbjct: 1281 SDMSGKIKTGQVALDDFIIFKRLGKNPE 1308
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 110/190 (57%), Gaps = 9/190 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ K ++LD E + G VYL GKV K++ + SCC+ V I+R I+LLPRS+
Sbjct: 465 EDDKSLFFYWLDYLE---GENGVVYLVGKVKDKDSGRYVSCCLTVNGIERCIFLLPRSKQ 521
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
L+ T V ++Y EF+++ ++ I F S+ + +KYAF GVP S Y+++RY
Sbjct: 522 LEDGHETDRAVGEDEIYDEFEELTAKHGIKRFLSKWVTRKYAFEHAGVPAESSYMKIRYG 581
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE--KFPSRISWCKY 380
P LP D G TFS FGT TS E L+++R+I GPSWL+ A + + ISWCK
Sbjct: 582 FDEPQLPFDFKGRTFSKAFGTNTSPFELLVVKRRIFGPSWLKISNASLAEGSTPISWCKM 641
Query: 381 EVQCNQMEKI 390
EV + + I
Sbjct: 642 EVTIDDPKDI 651
>gi|320580849|gb|EFW95071.1| DNA-directed DNA polymerase alpha [Ogataea parapolymorpha DL-1]
Length = 1421
Score = 334 bits (857), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/424 (42%), Positives = 266/424 (62%), Gaps = 23/424 (5%)
Query: 413 SSYIIKIMCEL----NVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLP 468
+S +KI+ E+ +L L+ Q+TN+ GN + TL G R+ RNE++LLH F + Y++P
Sbjct: 699 NSMSVKIIAEVAFRVQILSLSKQLTNLAGNAWAHTLGGTRAGRNEYILLHEFTKNGYIVP 758
Query: 469 DK------QYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
DK Q E+ G+ + KK Y GGLV EP+KG + +I++MDFNSLY
Sbjct: 759 DKETRSQRQAAAAAAALEQDGDESAATSNKKTKYQGGLVFEPEKGLHKNYILVMDFNSLY 818
Query: 523 PSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK 582
PSIIQE+NICFTT+ L D+D+ + P V G+LP +++LV RR+VK L+K
Sbjct: 819 PSIIQEFNICFTTVNRSNLGDNDLPNV----PPSDVAQGVLPRLLQQLVNRRREVKKLLK 874
Query: 583 QPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSL 642
P ++ QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT +GREIL++T+ L
Sbjct: 875 DPRATAVEKAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNRGREILMDTRQL 934
Query: 643 VENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLL 702
E++ V+YGDTDS+MI +++ KIG+ K + N+ Y+ LE+DID V+K +LL
Sbjct: 935 AESIGLRVVYGDTDSVMIDTGSDNFQDAIKIGDDFKIKVNERYRLLEIDIDNVFKRLLLH 994
Query: 703 KKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSL 762
KKKYAA++ S ++G E+KG+D+ RR++ L+ E FV+ +IL D
Sbjct: 995 SKKKYAAMNASMDASGLEKTVLEVKGLDMRRREFCPLSKETSTFVLEKIL-----GDADP 1049
Query: 763 DDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRG 818
+D L I+ H++ +R L + +P+ L I +L+K PE GGK + Q+ L ++G
Sbjct: 1050 EDALNEIYAHLEDVRNKLTDNQIPMHKLTINTRLSKDPEQYPGGKSMPAVQVALRLRKQG 1109
Query: 819 RRRR 822
+ R
Sbjct: 1110 KLVR 1113
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 95/194 (48%), Gaps = 16/194 (8%)
Query: 208 NKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL 267
+ + +MF++D E ++ LFGKV + H SC V V I R+IY LPR L
Sbjct: 283 DSETLQMFWMDYAE----VDNSLLLFGKVKTLDGR-HVSCVVQVNGISREIYFLPRESRL 337
Query: 268 KTKE--PVSIAQVYSEFDQIATQYKILD-FKSRKIEKKYAFNLPGVPDLSEYLEVRYSAK 324
+ P + V+ E + LD K++ KK+AF L +P +EYL+V +
Sbjct: 338 DEDDGPPPTAMDVHEEIIPLLLDKFGLDRIKAKPETKKWAFELENIPKETEYLKVLLPFQ 397
Query: 325 CP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISW 377
P LPS L G+TF HVFG + E +++R + GP WLE A+ F + S
Sbjct: 398 TPKSRNTVLPSTLEGETFRHVFGANANIFETFVVQRNVMGPCWLEIKGAD-FSAIKNSSH 456
Query: 378 CKYEVQCNQMEKIR 391
C+ EV +I+
Sbjct: 457 CQVEVAVADPAQIK 470
>gi|300681492|emb|CBH32588.1| DNA polymerase alpha catalytic subunit,putative,expressed [Triticum
aestivum]
Length = 1369
Score = 334 bits (856), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 196/407 (48%), Positives = 268/407 (65%), Gaps = 39/407 (9%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK------ 470
+++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLH+F K +++PDK
Sbjct: 664 LELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFPSKKFIVPDKFAACKE 723
Query: 471 -QYGKNKKEGEETG-------------EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
+ K K + G + GK RK +Y+GGLVLEPKKG YDK+I+L+
Sbjct: 724 LNFAKRKLNADTGGGNAVDPSIDDEVHHGDPGKVRKVPSYAGGLVLEPKKGLYDKYILLL 783
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
DFNSLYPSIIQE+NICFTT V D ++ LP + TG+LP +K LVE RR
Sbjct: 784 DFNSLYPSIIQEFNICFTT--VERSSDGNLPN----LPTSKA-TGVLPELLKSLVERRRM 836
Query: 577 VKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREI 635
VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF +SRFFA+PLA L+T +GREI
Sbjct: 837 VKSWLKT---ASGLKRQQFDIQQQALKLTANSMYGCLGFTSSRFFAKPLAELITLQGREI 893
Query: 636 LLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDG 694
L NT +LV+ NLN EVIYGDTDS+MI ++D I ++ E NK Y+ LE+D+DG
Sbjct: 894 LQNTVNLVQNNLNLEVIYGDTDSIMIYTGLDDISKAKSIAGKVIQEVNKKYRCLEIDLDG 953
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
VYK MLLLKKKKYAA+ ++ +G + + E KG+D+VRRDWS L+ E G F ++QIL
Sbjct: 954 VYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDWSLLSKEIGDFCLNQIL-- 1009
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + DD +++IH + +++ + +G + L ITK LTKAPE
Sbjct: 1010 ---SGGTCDDVVESIHNSLVQVQAQMKSGQIELEKYIITKSLTKAPE 1053
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 99/197 (50%), Gaps = 27/197 (13%)
Query: 211 VFRMFFLDAFEDIYK-QPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL-- 267
+ LDA+E+ + GTVYLFGKV V+ HS CCV+V+N+ R IY +P S
Sbjct: 251 ALPFYLLDAYEEPFGINSGTVYLFGKV-VRGKRFHS-CCVVVKNMQRCIYAIPSSSVFPR 308
Query: 268 ------------KTKEPVSIAQVY-------SEFDQIATQYKILDFKSRKIEKKYAFNLP 308
P A ++ SE + + +F +++ YAF
Sbjct: 309 DTISRIERNSTSSDASPSLRATLHELSSGLKSEIADKLSDLNVSNFVMTPVKRNYAFERT 368
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
VP +Y L+V Y K PA+P+DL G F + GT S LE L++RKIKGPSWL +
Sbjct: 369 DVPIGEQYVLKVNYPYKDPAVPADLRGKYFHALLGTNNSALELFLIKRKIKGPSWLSISK 428
Query: 368 AEKFPS--RISWCKYEV 382
PS R+SWCK+EV
Sbjct: 429 FVACPSTERVSWCKFEV 445
>gi|406695133|gb|EKC98448.1| DNA polymerase alpha catalytic subunit [Trichosporon asahii var.
asahii CBS 8904]
Length = 1445
Score = 333 bits (854), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 189/429 (44%), Positives = 267/429 (62%), Gaps = 22/429 (5%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++FI+ + + + + I + +LPL Q+TN+ GN + TL GGR+ RNEF+LLH FH
Sbjct: 732 LIQFIRLAEIDTYFQLAIAARVQLLPLTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFH 791
Query: 462 EKSYVLPDKQYGKNK-----KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
+ YV PDK + K ++GEE E + G R KA Y+GGLV EPK+G +D +I++M
Sbjct: 792 KLKYVCPDKTFKNTKIKFINEDGEEQ-EVSAGHKRGKAKYAGGLVFEPKRGLWDTYILVM 850
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
DFNSLYPSIIQEYNI FTT+ + D + + +P V G+LP I LV+ RRQ
Sbjct: 851 DFNSLYPSIIQEYNIDFTTVEREDCEGEDEEKIPD-VPSRDVAQGVLPRIIATLVQRRRQ 909
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMK + + L Q+DI+Q+ALKLTANSMYGCLGF SRF ++PLAAL T KGREIL
Sbjct: 910 VKGLMKDKSAGAAKLQQWDIKQQALKLTANSMYGCLGFAGSRFSSRPLAALTTFKGREIL 969
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
+T+ L E+L+ +V+YGDTDS+ ++ NV Y KI N+ K N+ YK LE+D+D +
Sbjct: 970 THTRELAESLSLDVVYGDTDSVFVNSNVVSYPEAVKIANEFKKLVNERYKLLEIDLDATF 1029
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
+ +LLL KKKYAA+ I + GK S EIKG+D+ RR++S+L+ +A V+ +IL
Sbjct: 1030 ERVLLLNKKKYAAVKIDEA--GKK--STEIKGLDMKRREFSKLSKDASSSVLKEIL---- 1081
Query: 757 YTDYSLDDR---LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLS 813
S DD ++ IHE++ ++ + +G VPL I K P+ Q+ L
Sbjct: 1082 ----SGDDTEKVVEKIHEYLIQLGEIVRSGAVPLDDFIIYKNPEDYPDKKSQPHVQVALR 1137
Query: 814 RNRRGRRRR 822
+G R
Sbjct: 1138 MKAKGTAVR 1146
Score = 117 bits (292), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL--KT 269
RMF+LD +Q G V+L GKV +++N + S C+ + I R +++ PR++ + +T
Sbjct: 334 LRMFWLD----FQEQDGVVHLIGKVLDRQSNKYVSACLSINGIQRNLFIKPRAKRMVGQT 389
Query: 270 KEPVSI--AQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCP 326
+ + + VY+EFD + +++ I ++K + +++KYAF + SE+++V Y P
Sbjct: 390 ESDMDVDKTDVYTEFDSVRSKHGIDEWKCKFVQRKYAFEDHDIERGESEWMKVTYPFTQP 449
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQ 386
+P +G TFSH+FGT T+ E L+L+R+I GP WL A SWCK E +
Sbjct: 450 EIPMGTTGATFSHIFGTNTTAFELLVLKRRIMGPCWLNITGAVPSTKATSWCKIEFTVDD 509
Query: 387 MEKI 390
+ +
Sbjct: 510 PKNV 513
>gi|401885415|gb|EJT49533.1| DNA polymerase alpha catalytic subunit [Trichosporon asahii var.
asahii CBS 2479]
Length = 1445
Score = 333 bits (853), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 188/425 (44%), Positives = 266/425 (62%), Gaps = 22/425 (5%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++FI+ + + + + I + +LPL Q+TN+ GN + TL GGR+ RNEF+LLH FH
Sbjct: 732 LIQFIRLAEIDTYFQLAIAARVQLLPLTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFH 791
Query: 462 EKSYVLPDKQYGKNK-----KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
+ YV PDK + K ++GEE E + G R KA Y+GGLV EPK+G +D +I++M
Sbjct: 792 KLKYVCPDKTFKNTKIKFINEDGEEQ-EVSAGHKRGKAKYAGGLVFEPKRGLWDTYILVM 850
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
DFNSLYPSIIQEYNI FTT+ + D + + +P V G+LP I LV+ RRQ
Sbjct: 851 DFNSLYPSIIQEYNIDFTTVEREDCEGEDEEKIPD-VPSRDVAQGVLPRIIATLVQRRRQ 909
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMK + + L Q+DI+Q+ALKLTANSMYGCLGF SRF ++PLAAL T KGREIL
Sbjct: 910 VKGLMKDKSAGAAKLQQWDIKQQALKLTANSMYGCLGFAGSRFSSRPLAALTTFKGREIL 969
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
+T+ L E+L+ +V+YGDTDS+ ++ NV Y KI N+ K N+ YK LE+D+D +
Sbjct: 970 THTRELAESLSLDVVYGDTDSVFVNSNVVSYPEAVKIANEFKKLVNERYKLLEIDLDATF 1029
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
+ +LLL KKKYAA+ I + GK S EIKG+D+ RR++S+L+ +A V+ +IL
Sbjct: 1030 ERVLLLNKKKYAAVKIDE--AGKK--STEIKGLDMKRREFSKLSKDASSSVLKEIL---- 1081
Query: 757 YTDYSLDDR---LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLS 813
S DD ++ IHE++ ++ + +G VPL I K P+ Q+ L
Sbjct: 1082 ----SGDDTEKVVEKIHEYLIQLGEIVRSGAVPLDDFIIYKNPEDYPDKKSQPHVQVALR 1137
Query: 814 RNRRG 818
+G
Sbjct: 1138 MKAKG 1142
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL--KT 269
RMF+LD +Q G V+L GKV +++N + S C+ + I R +++ PR++ + +T
Sbjct: 334 LRMFWLD----FQEQDGVVHLIGKVLDRQSNKYVSACLSINGIQRNLFIKPRAKRMVGQT 389
Query: 270 KEPVSI--AQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCP 326
+ + + VY+EFD + +++ I ++K + +++KYAF + SE+++V Y P
Sbjct: 390 ESDMDVDKTDVYTEFDSVRSKHGIDEWKCKFVQRKYAFEDHDIERGESEWMKVTYPFTQP 449
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQ 386
+P +G TFSH+FGT T+ E L+L+R+I GP WL A SWCK E +
Sbjct: 450 EIPMGTTGATFSHIFGTNTTAFELLVLKRRIMGPCWLNITGAVPSTKATSWCKIEFTVDD 509
Query: 387 MEKI 390
+ +
Sbjct: 510 PKNV 513
>gi|58268454|ref|XP_571383.1| DNA polymerase alpha catalytic subunit [Cryptococcus neoformans var.
neoformans JEC21]
gi|57227618|gb|AAW44076.1| DNA polymerase alpha catalytic subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 1485
Score = 332 bits (852), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 187/410 (45%), Positives = 262/410 (63%), Gaps = 24/410 (5%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++FI+ + + + + I + +LPL Q+TN+ GN + TL GGR+ RNEF+LLH FH
Sbjct: 796 LIKFIRLCEVDAFFQMAIAARVQILPLTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFH 855
Query: 462 EKSYVLPDKQYGKNKK----EGEETGE---ANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
YV PDK K K + +E E A KG+ R KA Y+GGLV EPK+G +DK+II
Sbjct: 856 RLEYVCPDKAPYKAKTRPTGDDDEVTEDIIAMKGQ-RGKAKYAGGLVFEPKRGLWDKYII 914
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPE---HQVDTGILPSEIKKLV 571
+MDFNSLYPSIIQEYNI FTT+ +D D E +P+ V G+LP I LV
Sbjct: 915 IMDFNSLYPSIIQEYNIDFTTVE----RDDDENAEEEKIPDVPSSDVPQGVLPRIIATLV 970
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
RRQVKALMK + + L+QYDI+Q+ALKLTANSMYGCLGF SRF ++PLAAL T K
Sbjct: 971 NRRRQVKALMKDKSATPAKLLQYDIKQQALKLTANSMYGCLGFAGSRFSSRPLAALTTFK 1030
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREIL +T+ L E+L +V+YGDTDS+ ++ NV Y KI N+ K N+ YK LE+D
Sbjct: 1031 GREILTHTRELAESLQLDVVYGDTDSVFVNSNVTTYPEALKIANEFKKLVNERYKLLEID 1090
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+D V++ +LLL KKKYAA+ I + S E+KG+D+ RR++S+++ +A ++ +I
Sbjct: 1091 LDAVFERILLLNKKKYAAVKIDEAGER----STEVKGLDMKRREFSKVSKDASAAILKEI 1146
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L + + + ++ IHE + K+ + N +P+ I K+L K PE
Sbjct: 1147 LSGE-----ATEVVVEKIHELLTKLGEAVRNNEIPIDDYIIFKRLGKNPE 1191
Score = 105 bits (263), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 96/190 (50%), Gaps = 24/190 (12%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R F+LD E Q G V+L GKV K+ + S CV V I+R +Y+ PR++
Sbjct: 383 LRFFWLDHLE----QDGIVHLVGKVLDKQTGKYVSACVSVTGIERCLYVKPRAKRFARGF 438
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYS---A 323
+T VS V EF+ +Q I ++ + +++KYAF V S++LEV Y
Sbjct: 439 ETDLDVSEEDVLDEFENFRSQVGIDQYRCKFVKRKYAFEDKDVEKGESDWLEVVYGFDRE 498
Query: 324 KC------------PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
C PA+P D +G TFSH+FGT T+ E ++ +KI GPSWLE +
Sbjct: 499 SCVRVYRLVLNKIEPAIPMDSNGATFSHIFGTNTTPFELFVVNQKIMGPSWLEIKDIAPV 558
Query: 372 PSRISWCKYE 381
SWCK E
Sbjct: 559 EKASSWCKLE 568
>gi|340522222|gb|EGR52455.1| polymerase [Trichoderma reesei QM6a]
Length = 1474
Score = 332 bits (852), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 188/430 (43%), Positives = 271/430 (63%), Gaps = 18/430 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + YI + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 747 GLMDYVTHMEADTHYIAALAVSVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 806
Query: 461 HEKSYVLPDKQYGKNKKEGEE-TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
H Y+ PDKQ K +++ EE G+ G G+KK Y GGLV EP+KG YDKF+++MDFN
Sbjct: 807 HRNKYICPDKQTFKGRQKAEEENGDEEAGDGKKKDKYKGGLVFEPEKGLYDKFVLVMDFN 866
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLVESRRQV 577
SLYPSIIQE+NICFTT+ D++ + +PE V+ GILP I LV RRQV
Sbjct: 867 SLYPSIIQEFNICFTTVDRTASADNE-----DAVPEVPVNQEQGILPRLIATLVSRRRQV 921
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 922 KNLMKDKKATPEELATWDIKQLALKLTANSMYGCLGYTRSRFYARPLAILTTHKGREILR 981
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ + +VIYGDTDS+MI+ NV++ FK+GN+ K N+ Y+ LE+DID V++
Sbjct: 982 STKDLAESKSLQVIYGDTDSVMINANVDNVADAFKVGNEFKKAVNEQYRLLEIDIDNVFR 1041
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E K ++ +IL
Sbjct: 1042 RILLQAKKKYAAINLVE-KDGKFIEKMEVKGLDMRRREYCALSKEVSKHLLDEILSGD-- 1098
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLS 813
++ + IHE+++ I T + +P+ I QL K P+ + Q+ L
Sbjct: 1099 ---DIEVAVARIHEYLRDIATKMREFSIPVAKYTIYTQLGKGPKEYPNADSMPQVQVALR 1155
Query: 814 RNRRGRRRRR 823
RG+ R+
Sbjct: 1156 DMLRGKTVRK 1165
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 106/174 (60%), Gaps = 10/174 (5%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TK 270
FF + ++ G++ LFGKV K+ S+ SC V + NI RK+Y LPR + L+ T
Sbjct: 347 FFWTDYTEVN---GSLCLFGKVLNKKTQSYVSCFVKIDNILRKLYFLPRQQRLRDGEETG 403
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
+ V ++ VY+E D++ T+ + +K +K ++KYAF+LP +P ++Y+++ Y PAL
Sbjct: 404 DEVDMSDVYNEVDELMTKMNVGMYKIKKCQRKYAFDLPDIPKEADYMKLLYPYTKPALNM 463
Query: 331 DLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
D G+TFSHVFGT T+ E +L + I GP WL+ +A+ F + S CK EV
Sbjct: 464 DTKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIQDAD-FGAIKNASHCKLEV 516
Score = 46.6 bits (109), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDD 153
+ K ++ A +LK L+ G K Y+ N+Y+EV E Y E V R +DD++ D
Sbjct: 1 MPKVDRRAKLAELKALRQAGKKAFESYQVEDVANLYDEVDEAGYKEIVRDRLNQDDFVVD 60
Query: 154 DGGDGYVEDGREIFD 168
D G+GY +DGRE +D
Sbjct: 61 DNGEGYADDGREDWD 75
>gi|134112730|ref|XP_774908.1| hypothetical protein CNBF0730 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257556|gb|EAL20261.1| hypothetical protein CNBF0730 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1494
Score = 332 bits (851), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 187/410 (45%), Positives = 262/410 (63%), Gaps = 24/410 (5%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++FI+ + + + + I + +LPL Q+TN+ GN + TL GGR+ RNEF+LLH FH
Sbjct: 781 LIKFIRLCEVDAFFQMAIAARVQILPLTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFH 840
Query: 462 EKSYVLPDKQYGKNKK----EGEETGE---ANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
YV PDK K K + +E E A KG+ R KA Y+GGLV EPK+G +DK+II
Sbjct: 841 RLEYVCPDKAPYKAKTRPTGDDDEVTEDIIAMKGQ-RGKAKYAGGLVFEPKRGLWDKYII 899
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPE---HQVDTGILPSEIKKLV 571
+MDFNSLYPSIIQEYNI FTT+ +D D E +P+ V G+LP I LV
Sbjct: 900 IMDFNSLYPSIIQEYNIDFTTVE----RDDDENAEEEKIPDVPSSDVPQGVLPRIIATLV 955
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
RRQVKALMK + + L+QYDI+Q+ALKLTANSMYGCLGF SRF ++PLAAL T K
Sbjct: 956 NRRRQVKALMKDKSATPAKLLQYDIKQQALKLTANSMYGCLGFAGSRFSSRPLAALTTFK 1015
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREIL +T+ L E+L +V+YGDTDS+ ++ NV Y KI N+ K N+ YK LE+D
Sbjct: 1016 GREILTHTRELAESLQLDVVYGDTDSVFVNSNVTTYPEALKIANEFKKLVNERYKLLEID 1075
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+D V++ +LLL KKKYAA+ I + S E+KG+D+ RR++S+++ +A ++ +I
Sbjct: 1076 LDAVFERILLLNKKKYAAVKIDEAGER----STEVKGLDMKRREFSKVSKDASAAILKEI 1131
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L + + + ++ IHE + K+ + N +P+ I K+L K PE
Sbjct: 1132 LSGE-----ATEVVVEKIHELLTKLGEAVRNNEIPIDDYIIFKRLGKNPE 1176
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 95/175 (54%), Gaps = 9/175 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R F+LD E Q G V+L GKV K+ + S CV V I+R +Y+ PR++
Sbjct: 383 LRFFWLDHLE----QDGIVHLVGKVLDKQTGKYVSACVSVTGIERCLYVKPRAKRFARGF 438
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCP 326
+T VS V EF+ +Q I ++ + +++KYAF V S++LEV Y P
Sbjct: 439 ETDLDVSEEDVLDEFENFRSQVGIDQYRCKFVKRKYAFEDKDVEKGESDWLEVVYGFDQP 498
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
A+P D +G TFSH+FGT T+ E ++ +KI GPSWLE + SWCK E
Sbjct: 499 AIPMDSNGATFSHIFGTNTTPFELFVVNQKIMGPSWLEIKDIAPVEKASSWCKLE 553
>gi|358397908|gb|EHK47276.1| hypothetical protein TRIATDRAFT_282724 [Trichoderma atroviride IMI
206040]
Length = 1468
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 189/427 (44%), Positives = 272/427 (63%), Gaps = 12/427 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + YI + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 746 GLMDYVTHMEADTHYIAALAVSVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 805
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
+ Y+ PDKQ K +++ EE + G+G+KK Y GGLV EP+KG YDKF+++MDFNS
Sbjct: 806 YRNKYICPDKQTFKGRQKAEEENDEEAGEGKKKDKYKGGLVFEPEKGLYDKFVLVMDFNS 865
Query: 521 LYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
LYPSIIQEYNICFTT+ D D + E +P +Q D GILP I LV RRQVK+L
Sbjct: 866 LYPSIIQEYNICFTTVDRTTSADDDGDAVPE-VPVNQ-DQGILPRLIATLVSRRRQVKSL 923
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +TK
Sbjct: 924 MKDKKATPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAILTTHKGREILRSTK 983
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
L E+ + +VIYGDTDS+MI+ NV++ FK+GN+ K N+ Y+ LE+DID V++ +L
Sbjct: 984 DLAESKSLQVIYGDTDSVMINANVDNVADAFKVGNEFKKAVNEQYRLLEIDIDNVFRRIL 1043
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
L KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E K ++ +IL
Sbjct: 1044 LQAKKKYAAINLIE-KDGKFIEKMEVKGLDMKRREYCALSKEVSKHLLDEILSGD----- 1097
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLSRNR 816
++ + IHE++++ T + VP+ I QL K P+ + Q+ L
Sbjct: 1098 DIEVAVARIHEYLRETATKMREFTVPVPKYTIYTQLGKGPKEYPNADSMPQVQVALRDLA 1157
Query: 817 RGRRRRR 823
RG+ R+
Sbjct: 1158 RGKTVRK 1164
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 103/174 (59%), Gaps = 10/174 (5%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TK 270
FF + +I G++ LFGKV K+ S+ SC V V NI RK+Y LPR + ++ T
Sbjct: 346 FFWTDYTEIN---GSLCLFGKVLNKKTRSYVSCFVKVDNILRKLYFLPRQQRVRDGEETG 402
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
E V + VY+E D+I T+ + FK +K E+KYAF L +P ++Y+++ Y P L
Sbjct: 403 EDVDMGDVYNEVDEIMTKMNVGMFKIKKCERKYAFELADIPKEADYMKLLYPYTKPTLNM 462
Query: 331 DLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
D+ G+TFSHVFGT T+ E +L + I GP WL+ +A+ F + S CK EV
Sbjct: 463 DVKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIQDAD-FGAIKNASHCKLEV 515
Score = 46.6 bits (109), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDD 153
+ K ++ A +LK L+ G K Y+ +N+Y+EV E Y + V +R +DD++ D
Sbjct: 1 MPKVDRRAKLAELKALRQAGKKAFESYQVEDADNLYDEVDEAGYKKIVRERLNQDDFVVD 60
Query: 154 DGGDGYVEDGREIFD 168
D G+GY +DGRE +D
Sbjct: 61 DNGEGYADDGREDWD 75
>gi|224096742|ref|XP_002310719.1| predicted protein [Populus trichocarpa]
gi|222853622|gb|EEE91169.1| predicted protein [Populus trichocarpa]
Length = 1312
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 196/428 (45%), Positives = 268/428 (62%), Gaps = 42/428 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++E +++ + +++M L++LPL Q+TN+ GN+ +TL G R++R E+LLLHAFH
Sbjct: 562 LIELVEYGETDAWLSMELMFHLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFH 621
Query: 462 EKSYVLPDKQYGKNKK-----------------EGEETGEAN---------KGKGRKKAA 495
K Y++PDK + K+ + +T AN GK +K A
Sbjct: 622 AKKYIVPDKMSSRVKEAKITKRRINNGIEDRNADELDTDAANFENDNQQSDHGKRKKGPA 681
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPE 555
Y+GGLVLEPKKG YDK+++L+DFNSLYPSIIQEYNICFTT+ + + L LP
Sbjct: 682 YAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTV------ERSMDGLVPRLPS 735
Query: 556 HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFP 615
+ TG+LP +K LVE RR VK+ MK N S + Q DI+Q+ALKLTANSMYGCLGF
Sbjct: 736 SKT-TGVLPELLKNLVERRRMVKSWMK--NASGLKVQQLDIQQQALKLTANSMYGCLGFS 792
Query: 616 NSRFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIG 674
NSRF+A+PLA L+T +GREIL +T LV+ NLN EVIYGDTDS+MI ++D I
Sbjct: 793 NSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIPKAKAIA 852
Query: 675 NQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRR 734
++ E NK Y+ LE+D+DG+YK M LL KKK A + +G E KG+D+VRR
Sbjct: 853 GKVIQEVNKKYRCLEIDLDGLYKRM-LLLKKKKYAAVKVQFKDGTPYEVIERKGLDMVRR 911
Query: 735 DWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITK 794
DWS L+ E G F ++QIL + S +D +++IH + K++ D+ +G V L ITK
Sbjct: 912 DWSLLSKELGDFCLAQIL-----SGGSCEDVIESIHNSLMKVQEDMRSGQVALEKYVITK 966
Query: 795 QLTKAPEG 802
LTK PE
Sbjct: 967 TLTKPPEA 974
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 107/195 (54%), Gaps = 28/195 (14%)
Query: 214 MFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEP 272
+ LDA E+I+ GT+YLFGKV K N++ SCCV+V+N+ R +Y +P S +T E
Sbjct: 127 FYILDAHEEIFGANRGTIYLFGKV--KAGNTYHSCCVVVKNMHRCVYAIPNSSIFRTDEM 184
Query: 273 VSIAQ-------------------VYSEFDQIATQYKILD---FKSRKIEKKYAFNLPGV 310
+ + Y +++A+Q L+ F ++++YAF+ +
Sbjct: 185 SMLEKEVEESRISSTDFHKKLQDMAYELKNEVASQLLSLNVSSFSMAPVKRRYAFDRSDI 244
Query: 311 PDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE 369
P Y L++ Y K P LP+DL G+TF + GT S LE L++RK+KGPSWL +
Sbjct: 245 PAGENYALKINYPFKEPPLPADLKGETFCALLGTHCSALELFLVKRKVKGPSWLSVSKFA 304
Query: 370 KFPS--RISWCKYEV 382
P+ ++SWCK+E+
Sbjct: 305 TCPASQKVSWCKFEI 319
>gi|336271345|ref|XP_003350431.1| hypothetical protein SMAC_02144 [Sordaria macrospora k-hell]
gi|380090953|emb|CCC11486.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1482
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 183/405 (45%), Positives = 258/405 (63%), Gaps = 17/405 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + +I + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 753 GLMDYISHAETDTYFIAALALRTQILPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 812
Query: 461 HEKSYVLPDKQY--GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
H YV+PDKQ G+ + E E E +KK Y GGLV EP+KG YDKF+++MDF
Sbjct: 813 HRNKYVVPDKQTFKGRQRIEEENAEEEGGEGAKKKDKYKGGLVFEPEKGLYDKFVLVMDF 872
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNICFTT+ L + D +P+ Q GILP I LV R+QVK
Sbjct: 873 NSLYPSIIQEYNICFTTVDRTSLSEDD--DAVPEVPKEQAQ-GILPKLIATLVSRRKQVK 929
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK N + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +
Sbjct: 930 SLMKDKNATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRS 989
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK L E+ + +VIYGDTDS+MI+ N ++ ++G++ K N+ Y+ LE+DID V++
Sbjct: 990 TKELAESNSLQVIYGDTDSVMINANKDNVADALRVGHEFKKAVNERYRLLEIDIDNVFRR 1049
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA+++ ++ N K + E+KG+D+ RR++ L+ E ++++IL
Sbjct: 1050 ILLQAKKKYAAINMVQV-NDKWVEKMEVKGLDMKRREYCGLSKEISNRILTEIL------ 1102
Query: 759 DYSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
S DD +Q IHE+++ I + G VP+ I QL KAP
Sbjct: 1103 --SGDDTEVSVQRIHEYLRDISAKMREGAVPVQKYIILTQLGKAP 1145
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 98/177 (55%), Gaps = 11/177 (6%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
MF+ D E G++ LFGKV K+ ++ SC V V NI RK++ LPR ++
Sbjct: 350 LNMFWTDYTE----VNGSLCLFGKVLNKKTKTYVSCFVKVDNILRKLFFLPRKHRVRGGQ 405
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY+E D+I T+ + K + +KYAF LP VP +YL++ Y PA
Sbjct: 406 ETTEGVEMMDVYNEVDEIMTKMNVGMHKIKACTRKYAFELPDVPKEGQYLKLLYPYTKPA 465
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
+ G+TFSHVFGT T+ E +L + I GP WL+ +A+ F S S CK EV
Sbjct: 466 MEPTTQGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDAD-FTSLRNASHCKLEV 521
Score = 52.8 bits (125), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 13/111 (11%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDG 155
+ K KFA F ++L+ G K Y+ + +YEEV E +Y + V R EDD++ DD
Sbjct: 5 VAKRGKFAEF---RELRQSGKKKSYDVGEVDELYEEVDENQYKKIVRDRLNEDDFVVDDN 61
Query: 156 GDGYVEDGREIFD------DDIED---VPQKKEKHDKRKKNKNIQNPNAKD 197
G+GY +DGRE +D DD E+ +P K + K++K + +A D
Sbjct: 62 GEGYADDGREEWDRLPQYQDDSEEELGLPGSKPRKSKKQKEQEDAKRDAND 112
>gi|443900254|dbj|GAC77580.1| GPI-anchor transamidase [Pseudozyma antarctica T-34]
Length = 1658
Score = 331 bits (849), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 184/439 (41%), Positives = 265/439 (60%), Gaps = 48/439 (10%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ +++ + + + + I ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 865 LLTYVRHCEVDTFFQMAIAAKVQILPLTKQLTNLAGNSWNKTLNGGRAERNEYILLHDFH 924
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGK---------------GRKKAAYSGGLVLEPKK 506
+ YV PDK KK+ ++ E KK + GGLV EPK+
Sbjct: 925 RQKYVCPDKISAWEKKQIQQAAELKAKAKAKNGATGAGAAAAASSKKDKFKGGLVFEPKR 984
Query: 507 GFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY----------- 552
G +DK+I++MDFNSLYPSIIQE+NI FTT+ P + L+D D
Sbjct: 985 GLWDKYILVMDFNSLYPSIIQEFNIDFTTVERPPTQGLEDDDAVNPATVAAEDDAEAAAE 1044
Query: 553 ----------LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALK 602
+P V+ G+LP I +LV RRQVK+LMK + + LMQ++I+Q ALK
Sbjct: 1045 GVVDGDKIPDVPSSDVEQGVLPRIIAQLVARRRQVKSLMKDKSATPSQLMQWNIKQLALK 1104
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC 662
LTANSMYGCLGF NSRF+A+PLAAL T KGREIL TK L E++ +V+YGDTDS+MI+
Sbjct: 1105 LTANSMYGCLGFENSRFYARPLAALTTFKGREILTATKDLAESMLLDVVYGDTDSVMINT 1164
Query: 663 NVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMIC 722
N +Y +IG + K N+ Y+ LE+DIDGV++ MLLL+KKKYAA+ + + +GK
Sbjct: 1165 NATEYREAIRIGLEFKKSVNERYRLLEIDIDGVFERMLLLQKKKYAAVMVDE--DGKR-- 1220
Query: 723 SQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDN 782
+ EIKG+D+ RR++S L+ +V+ QIL Q + +++IHE++ + +
Sbjct: 1221 TTEIKGLDMKRREYSALSKNVSNYVLEQILSGQ-----PTEVVVEHIHEYLGDMADKIKR 1275
Query: 783 GFVPLTLLEITKQLTKAPE 801
G V L I K+L K PE
Sbjct: 1276 GEVALEDFIIYKRLGKNPE 1294
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/190 (40%), Positives = 108/190 (56%), Gaps = 9/190 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ K ++LD E + G VYL GKV KE + SCC+ V I+R I+LLPRS+
Sbjct: 459 EDDKSLFFYWLDYLE---GENGVVYLVGKVKDKETGRYVSCCLTVNGIERCIFLLPRSKQ 515
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
L+ T V ++Y EF++++ ++ I F S+ + +KYAF GVP S Y+++RY
Sbjct: 516 LENGHETDRAVGEDEIYDEFEELSAKHGIKRFLSKWVTRKYAFEQAGVPAESNYMKIRYG 575
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE--KFPSRISWCKY 380
P LP D G TFS GT TS E L+++R+I GPSWL+ A + + ISWCK
Sbjct: 576 FDEPQLPFDFKGRTFSKTLGTNTSPFELLVVKRRIFGPSWLKISNASIAEGSTPISWCKM 635
Query: 381 EVQCNQMEKI 390
EV + I
Sbjct: 636 EVAVEDPKDI 645
>gi|302904102|ref|XP_003049003.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729937|gb|EEU43290.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1473
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 186/420 (44%), Positives = 260/420 (61%), Gaps = 31/420 (7%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + YI + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 743 GLLDYITHMEADTHYIAALAISVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 802
Query: 461 HEKSYVLPDKQ-YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
H Y+ PDKQ + ++ EE + G +KK Y GGLV EP+KG YDKF+++MDFN
Sbjct: 803 HRNKYICPDKQTFRGRQRAEEEQQQEEAGDTKKKDKYKGGLVFEPEKGLYDKFVLVMDFN 862
Query: 520 SLYPSIIQEYNICFTTIP----------------VRMLQDSDITTLCEYLPEHQVDTGIL 563
SLYPSIIQE+NICFTT+ + +Q D + + +P +Q D GIL
Sbjct: 863 SLYPSIIQEFNICFTTVDRTASVSRHWFFFRIMFLTPMQTEDEDAVPD-VPTNQ-DQGIL 920
Query: 564 PSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQP 623
P I LV RRQVK+LMK + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+P
Sbjct: 921 PRLIATLVSRRRQVKSLMKDKKATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARP 980
Query: 624 LAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNK 683
LA L T KGREIL +TK L E+ + +VIYGDTDS+MI+ NV++ FK+GN K N
Sbjct: 981 LAVLTTFKGREILRSTKELAESKSLQVIYGDTDSVMINANVDNVADAFKVGNDFKKAVND 1040
Query: 684 LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEA 743
YK LE+DID V++ +LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E
Sbjct: 1041 QYKLLEIDIDNVFRRILLQAKKKYAAINLVE-KDGKFIEKMEVKGLDMKRREYCALSKEI 1099
Query: 744 GKFVISQILDEQSYTDYSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
K ++ +IL S DD + IHE+++ I + +P+ I QL KAP
Sbjct: 1100 SKHLLDEIL--------SGDDTEVSIARIHEYLRDIAGKMREQTIPVPKYIIYTQLGKAP 1151
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 99/175 (56%), Gaps = 13/175 (7%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS 274
FF + +I G++ LFGKV K+ S+ SC V V NI RK+Y LPR ++ E
Sbjct: 344 FFWTDYMEIN---GSLCLFGKVLNKKTRSYVSCFVKVDNILRKLYFLPRQHRVQGGEETG 400
Query: 275 ----IAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
+ VY E D+I T+ K+ +K + +KYAF LPGVP ++Y+++ Y P P
Sbjct: 401 EEVEMTNVYDEVDEIMTRMKVGMYKIKACTRKYAFELPGVPKEAQYMKLLYPYNKP--PV 458
Query: 331 DLS-GDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
D + G+T+SHVFG+ T+ E +L + I GP WL+ + + F S S CK EV
Sbjct: 459 DPTPGETYSHVFGSNTALFEQFVLWKNIMGPCWLKIEDGD-FGSIKNGSHCKLEV 512
Score = 44.3 bits (103), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 104 AAFQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +LK L+ G K Y+ +N+Y+EV E Y + V R EDD++ DD G+GY
Sbjct: 5 ARLAELKALRQSGKKAFDNYKVKDVDNLYDEVDEAGYKKIVRDRLNEDDFVVDDNGEGYA 64
Query: 161 EDGREIFD 168
+DGRE +D
Sbjct: 65 DDGREEWD 72
>gi|322709417|gb|EFZ00993.1| DNA polymerase alpha catalytic subunit, putative [Metarhizium
anisopliae ARSEF 23]
Length = 1464
Score = 331 bits (848), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 184/406 (45%), Positives = 255/406 (62%), Gaps = 20/406 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + +I + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 745 GLMDYITHMEADTHFIAALALSVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 804
Query: 461 HEKSYVLPDKQY--GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
H Y+ PDKQ G+ K+E E EA +K GGLV EP+KG YDKF+++MDF
Sbjct: 805 HRNKYICPDKQSFRGRQKREDENQEEATGEGKKKDKY-KGGLVFEPEKGLYDKFVLVMDF 863
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLVESRRQ 576
NSLYPSIIQE+NICFTT+ L D + + +PE D GILP I LV RRQ
Sbjct: 864 NSLYPSIIQEFNICFTTVDRTALADDE-----DAVPEVPADQDQGILPRLIATLVGRRRQ 918
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VKALMK N + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 919 VKALMKDKNATPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREIL 978
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
+TK L E+ + +VIYGDTDS+MI+ NV+ F++GN+ K N YK LE+DID V+
Sbjct: 979 RSTKELAESKSLQVIYGDTDSVMINANVDSVADAFRVGNEFKRAVNDQYKLLEIDIDNVF 1038
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--DE 754
+ +LL KKKYAA+++ + +GK + E+KG+D+ RR++ L+ E K ++ +IL DE
Sbjct: 1039 RRILLQAKKKYAAINLIE-KDGKFVEKMEVKGLDMRRREYCALSKEISKHLLDEILSGDE 1097
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+ IHE+++ I + +P+ I QL K P
Sbjct: 1098 AEVA-------ITRIHEYLRDIAGKMREQSIPVAKYIIYTQLGKGP 1136
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/174 (37%), Positives = 102/174 (58%), Gaps = 11/174 (6%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TK 270
FF + +I G++ LFGKV K+ S+ SC V + NI RK+Y LPR + ++ +
Sbjct: 346 FFWTDYTEIN---GSLCLFGKVLNKKTKSYVSCFVKIDNILRKLYFLPRQQRVRDGDSIE 402
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
E V +A VY E D+I T+ K+ +K + +KYAF LP VP ++Y+++ Y P + +
Sbjct: 403 ETVEMASVYEEIDEIMTKLKVDMYKIKACTRKYAFELPNVPKEAQYMKLFYPYTRPQIDA 462
Query: 331 DLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
+G+T+SHVFG T+ E +L + I GP WL+ +A+ F + S CK EV
Sbjct: 463 -AAGETYSHVFGANTALFEQFVLWKNIMGPCWLKIQDAD-FGAIHNASHCKLEV 514
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDD 153
+ K N A +L L+ G K Y ++Y+EV E Y + V R EDD++ D
Sbjct: 1 MPKVNYRAKLAELYALRQSGKKTFDSYRVEDAADLYDEVDEDGYKKIVRDRLNEDDFVVD 60
Query: 154 DGGDGYVEDGREIFD--------DDIEDVPQKKEKHDKRKKNK 188
D G+GY +DGRE +D +D++++P + + K NK
Sbjct: 61 DNGEGYADDGREDWDRVHRYDSANDVDELPVRGRSNKAAKNNK 103
>gi|356496908|ref|XP_003517307.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Glycine max]
Length = 1512
Score = 330 bits (847), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 200/437 (45%), Positives = 278/437 (63%), Gaps = 49/437 (11%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+++ I++ + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLH F
Sbjct: 755 SLMKLIEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTF 814
Query: 461 HEKSYVLPDKQYGKNKKEGEET-----------------------------GEANKGKGR 491
H +++PDK + + KE +ET EA+ K +
Sbjct: 815 HAMKFMVPDK-FSYHAKETKETKLMKRRLTHDVEDNNFDAYIDDANHDNDASEADNKKSK 873
Query: 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCE 551
K +Y+GGLVLEPKKG YDK+I+L+DFNSLYPSIIQEYNICFTT+ R L +S
Sbjct: 874 KGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVE-RSLDES-----FP 927
Query: 552 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQP---NLSSDLL--MQYDIRQKALKLTAN 606
LP + TG+LP +K LV+ R+ VK+ +K N +D + Q DI+Q+ALKLTAN
Sbjct: 928 RLPSSKT-TGVLPEVLKNLVDRRKMVKSWIKNEKNKNEKTDPIRVQQLDIQQQALKLTAN 986
Query: 607 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVN 665
SMYGCLGF NSRF+A+PLA L+T++GREIL +T LV+ NLN EVIYGDTDS+MI ++
Sbjct: 987 SMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLD 1046
Query: 666 DYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQE 725
+ + KI ++ E NK YK LE+D+DG+YK MLLLKKKKYAA+ + +G + E
Sbjct: 1047 EIEEANKIAVRVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKL-LYKDGTPYEAIE 1105
Query: 726 IKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFV 785
KG+D+VRRDWS LA E G F ++QIL + S +D +++IH + K++ ++ NG V
Sbjct: 1106 RKGLDIVRRDWSILAKELGDFCLTQIL-----SGGSCEDVVESIHNSLMKVQEEMRNGQV 1160
Query: 786 PLTLLEITKQLTKAPEG 802
L ITK LTK PE
Sbjct: 1161 ALEKYVITKTLTKPPEA 1177
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 117/230 (50%), Gaps = 34/230 (14%)
Query: 205 DHENKKVFRMFFLDAFEDIYKQP-GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR 263
D E F + LDA+E+ Y + GT+YLFGKV K + + SCC+IV+N+ R IY +P
Sbjct: 315 DLEKDGSFFFYILDAYEEFYGENRGTLYLFGKV--KTGDLYQSCCIIVKNMQRCIYAVPS 372
Query: 264 SEHLKTKEPVS----------------------IAQVYSEFDQIATQYKILDFKSRKIEK 301
+T+E +S ++ V +E Q ++ +F +++
Sbjct: 373 LSLHRTEEMMSLERDVQESRISSADFFKKLQDAVSDVKNEIAQHLVNLEVSNFSMAPVKR 432
Query: 302 KYAFNLPGVPDLSEYL-EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGP 360
KYAF +P Y+ ++ YS K P LP DL G++F + GT S LE L++RKIKGP
Sbjct: 433 KYAFERSEIPAGENYVVKINYSFKDPVLPVDLKGESFCALLGTGCSALELFLIKRKIKGP 492
Query: 361 SWLEFPEAEKFPS--RISWCKYEV------QCNQMEKIRSKQGLIYLIGI 402
SWL+ + R+SWCK+EV Q N KI SK + + I
Sbjct: 493 SWLQVSNFSPSSASRRVSWCKFEVTVDSPKQINSAPKITSKIPPVVVAAI 542
>gi|168053915|ref|XP_001779379.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669177|gb|EDQ55769.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1231
Score = 330 bits (846), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 205/436 (47%), Positives = 277/436 (63%), Gaps = 47/436 (10%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK------ 470
+ +M L+VLPL Q+TN+ GN+ SRTL G R++R E+LLLH FH + ++LPDK
Sbjct: 497 LGLMFHLSVLPLTRQLTNISGNLWSRTLQGARAQRVEYLLLHEFHIRKFILPDKLSQKEK 556
Query: 471 --QYGKNKKEGE---------ETGE--------ANKGKGRKKAAYSGGLVLEPKKGFYDK 511
+ GK K + E G+ A KG+K AY GGLVLEPKKG YDK
Sbjct: 557 EKEVGKRKASAQSDRDVPPDGEDGDNRDAGLDNATAKKGKKGPAYLGGLVLEPKKGLYDK 616
Query: 512 FIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+I+L+DFNSLYPSIIQEYN+CFTT+ + +T +P V G+LP +K LV
Sbjct: 617 YILLLDFNSLYPSIIQEYNVCFTTV------ERTVTGSIPSIPLSDV-PGVLPQVLKGLV 669
Query: 572 ESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVT 629
E R+QVK +K+ ++D+L Q+DI+Q+ALKLTANSMYGCLGF NSRF+A+P+A L+T
Sbjct: 670 ERRKQVKGWLKK---TTDILKYQQFDIQQQALKLTANSMYGCLGFTNSRFYAKPIAELIT 726
Query: 630 AKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
A+GREIL +T LV+ +LN EVIYGDTDS+MI + D + I ++ E NK Y+ L
Sbjct: 727 AQGREILQSTVDLVQTSLNLEVIYGDTDSIMIHSGLEDLAAAKSIAMKVIREVNKKYRLL 786
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+D+DGVYK MLLLKKKKYAA+ + S+G + E KG+D+VRRDWS L+ E G + +
Sbjct: 787 EIDLDGVYKRMLLLKKKKYAAVKVQSNSDGSVTEVIEQKGLDIVRRDWSSLSKEIGNYCL 846
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGK 804
QIL + S ++ + IH ++K++ D+ NG + L ITK LTK PE G
Sbjct: 847 EQIL-----SGGSREEVVDAIHSQLRKLQEDMRNGQIELDKYVITKSLTKQPEDYPDGKN 901
Query: 805 VCITQIRLSRNRRGRR 820
Q+ L R + G R
Sbjct: 902 QPHVQVALRRKQSGHR 917
Score = 121 bits (304), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 76/212 (35%), Positives = 108/212 (50%), Gaps = 33/212 (15%)
Query: 198 DSLPLATDHENKKVFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDR 256
+SLPL D E++ F F LDA E+ Y PG +Y+FGKV V + SCCV+V+N+ R
Sbjct: 35 NSLPL--DAESRLPF--FLLDAHEEPYGANPGIIYMFGKVPV--GGKYESCCVVVRNMQR 88
Query: 257 KIYLLPRSEHLKTKEPVSIAQVYSE------------FDQIATQYK-----------ILD 293
+Y++P + + Q+ S +++T K +
Sbjct: 89 CVYVVPTPSIFPSNSIAELGQLASSDQPAEKIAFKAKLQELSTDLKQEMAEKLMDLDVAQ 148
Query: 294 FKSRKIEKKYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLL 352
F +++ YAF P VP Y +++ Y K P LPSDL G F V GT TS LE LL
Sbjct: 149 FSMYPVKRSYAFECPEVPTGENYFMKLMYPFKNPPLPSDLKGRNFVKVLGTHTSALELLL 208
Query: 353 LERKIKGPSWLEF--PEAEKFPSRISWCKYEV 382
++++IKGP WL P+ S+ISWCK EV
Sbjct: 209 IKKRIKGPCWLSIAAPQRVASSSQISWCKIEV 240
>gi|367051082|ref|XP_003655920.1| hypothetical protein THITE_2120214 [Thielavia terrestris NRRL 8126]
gi|347003184|gb|AEO69584.1| hypothetical protein THITE_2120214 [Thielavia terrestris NRRL 8126]
Length = 1484
Score = 329 bits (844), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 189/430 (43%), Positives = 276/430 (64%), Gaps = 18/430 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + +I + +LPL ++TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 751 GLMDYLSHAEADTYFIAALALRTQILPLTKELTNLAGNSWARTLTGTRAERNEYILLHEF 810
Query: 461 HEKSYVLPDKQYGKNKKEGE-ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ K Y+ PDKQ K + E E E + G+G+KK Y GGLV EP+KG YD+F+++MDFN
Sbjct: 811 YGKKYICPDKQPFKGRARVEDENQEEDGGEGKKKDKYKGGLVFEPEKGLYDRFVLVMDFN 870
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVD--TGILPSEIKKLVESRRQV 577
SLYPSIIQE+NICFTT+ D + + +P D +LP I LV+ RRQV
Sbjct: 871 SLYPSIIQEFNICFTTVDRTFSSDDE-----DAVPPVPTDKTPAVLPKLIAGLVDRRRQV 925
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K+LMK N + + L +DIRQ ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 926 KSLMKDKNATPEQLATWDIRQLALKLTANSMYGCLGYTKSRFYARPLAMLTTFKGREILR 985
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+++ +VIYGDTDS+MI NV++ K+G + K+E NK Y++LE+DID V++
Sbjct: 986 STKDLAESMSLQVIYGDTDSVMIHANVDNVADALKVGREFKAEVNKRYRRLEIDIDNVFR 1045
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA+++ + +NGK + E+KG+D+ RR++ L+ E K ++ +IL
Sbjct: 1046 RILLQAKKKYAAVNLVE-TNGKFVEKLEVKGLDMKRREYCPLSREVSKRILDEILSGND- 1103
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLS 813
T+ S +Q+IHE++++I + +P I QL KAP+ G + Q+ L
Sbjct: 1104 TEVS----VQHIHEYLREISGKMRAQAIPAQKYIILTQLGKAPKEYPNGDSMPQVQVALR 1159
Query: 814 RNRRGRRRRR 823
RG+ R+
Sbjct: 1160 EMARGKTMRK 1169
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 100/177 (56%), Gaps = 11/177 (6%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
+MF+ D E G++ LFGKV K+ + SC V + NI RK+Y LPR ++
Sbjct: 349 LKMFWTDYTE----VNGSLCLFGKVLNKKTGHYVSCFVKIDNILRKLYFLPRKHRVRRGV 404
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY+E D I T+ + K + +KYAF LP +P ++YL++ Y PA
Sbjct: 405 ETTEQVEMMDVYNEVDAIMTKMNVDMHKIKVCTRKYAFELPEIPSEAQYLKLLYPYTRPA 464
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
+ G+TFSHVFGT T+ E +L +KIKGP WL+ +A+ F + S C+ EV
Sbjct: 465 IELGTKGETFSHVFGTNTALFEQFVLWKKIKGPCWLKIEDAD-FGALKNASHCRLEV 520
Score = 47.0 bits (110), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGD 157
K ++ A + L+ G+ V Y+ E++YEEV E +Y + V R +DD++ DD G+
Sbjct: 6 KRDRLAELRALRQ-SGKKVFDTYKVAEVEDLYEEVDENQYKQIVRDRLNQDDFVVDDNGE 64
Query: 158 GYVEDGREIFD 168
GY +DGRE +D
Sbjct: 65 GYADDGREEWD 75
>gi|297795441|ref|XP_002865605.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297311440|gb|EFH41864.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1449
Score = 329 bits (844), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 196/448 (43%), Positives = 272/448 (60%), Gaps = 40/448 (8%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+VE I + +++M L++LPL +Q+TN+ GN+ +TL G R++RNE+ LLH FH
Sbjct: 740 LVELIDCGETDAWLSMELMFHLSILPLTLQLTNISGNLWGKTLQGARAQRNEYYLLHTFH 799
Query: 462 EKSYVLPDK--QYGKNKKEGE---------------------ETGEANKGKGRKKAAYSG 498
K ++LPDK Q+ K +K + E + K +K AY+G
Sbjct: 800 SKKFILPDKIPQHRKERKASKRRINHGPEDHSVDELDFDLALENDPSKGNKTKKGPAYAG 859
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPKKG YDK+++L+DF+SLYPSIIQEYNICFTTIP + LP Q
Sbjct: 860 GLVLEPKKGLYDKYVLLLDFSSLYPSIIQEYNICFTTIPRAEVG-------VPRLPSSQT 912
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSR 618
GILP ++ LV R+ V+ MK+ + + DIRQ+ALKL ANS+YG LGF NSR
Sbjct: 913 -PGILPKLMEHLVGIRKCVRLKMKKE--TGLKCRELDIRQEALKLAANSLYGYLGFSNSR 969
Query: 619 FFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQI 677
F+A+PLA L+T +GREILL T LV+N LN EVIYGDTDS+MI ++D + V IG +
Sbjct: 970 FYAKPLAELITLQGREILLRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVKAIGAKA 1029
Query: 678 KSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWS 737
E NK Y+ L+++ D +YK MLLL+KKKYAA+ + + +GK+ E KGVD+VRRDWS
Sbjct: 1030 IQEVNKKYRFLKIECDAIYKRMLLLRKKKYAAIKL-QFKDGKICEDIERKGVDMVRRDWS 1088
Query: 738 QLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLT 797
L+ E G +++IL S +D ++ IH + KI ++ NG V + ITK LT
Sbjct: 1089 LLSKEIGDLCLAKIL-----YGGSCEDVVEAIHNELMKINEEMRNGQVAVEKYVITKALT 1143
Query: 798 KAPEGGKVCITQIRLSRNRRGRRRRRRK 825
K+PE +Q + R R+R +K
Sbjct: 1144 KSPEAYPDSKSQPHVQVALRMRQRGYKK 1171
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 111/221 (50%), Gaps = 37/221 (16%)
Query: 197 DDSLPLAT---------DHENKKVFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSS 246
++ +PLA+ D + + LDA+E+ + GT++LFGKV K +++ S
Sbjct: 280 ENVVPLASAVNECQTEFDLDAHGSLLFYILDAYEEPFGASMGTIHLFGKV--KMRDTYKS 337
Query: 247 CCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQ----------------------VYSEFDQ 284
CC +V+NI R +Y +P + E +++ Q + E Q
Sbjct: 338 CCAVVKNIQRCVYAIPNDSIFPSHELMTLEQEVKESRLSPESFRGKLHEMASKLKKEISQ 397
Query: 285 IATQYKILDFKSRKIEKKYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGT 343
+ + ++ +++ YAF+ P VP +Y L++ Y K P LP DL G++F V G+
Sbjct: 398 QLLKLNVSNYSMALVKRNYAFDRPDVPAGEQYVLKINYPFKDPPLPEDLKGESFCAVLGS 457
Query: 344 KTSFLENLLLERKIKGPSWLEFP--EAEKFPSRISWCKYEV 382
TS LE +L+RKI GPSWL+ A R+SWCK+EV
Sbjct: 458 HTSALELFILKRKIMGPSWLKISIFSATSPSQRVSWCKFEV 498
>gi|405121124|gb|AFR95893.1| DNA polymerase alpha catalytic subunit [Cryptococcus neoformans var.
grubii H99]
Length = 1456
Score = 329 bits (843), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 187/410 (45%), Positives = 261/410 (63%), Gaps = 24/410 (5%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++FI+ + + + + I + +LPL Q+TN+ GN + TL GGR+ RNEF+LLH FH
Sbjct: 735 LIKFIRLCEVDAFFQMAIAARVQILPLTKQLTNLAGNSWNLTLNGGRAVRNEFILLHEFH 794
Query: 462 EKSYVLPDKQYGKNKK----EGEETGE---ANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
YV PDK K K + +E E A KG+ R KA Y+GGLV EPK+G +DK+II
Sbjct: 795 RLEYVCPDKAPYKVKTRPTGDDDEVTEDIIAMKGQ-RGKAKYAGGLVFEPKRGLWDKYII 853
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPE---HQVDTGILPSEIKKLV 571
+MDFNSLYPSIIQEYNI FTT+ +D D E +P+ V G+LP I LV
Sbjct: 854 IMDFNSLYPSIIQEYNIDFTTVD----RDEDENPEEEKIPDVPSSDVPQGVLPRIIATLV 909
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
RRQVK LMK + + L+QYDI+Q+ALKLTANSMYGCLGF SRF ++PLAAL T K
Sbjct: 910 NRRRQVKTLMKDKSATPAKLLQYDIKQQALKLTANSMYGCLGFAGSRFSSRPLAALTTFK 969
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREIL +T+ L E+L +V+YGDTDS+ ++ NV Y KI N+ K N+ YK LE+D
Sbjct: 970 GREILTHTRELAESLQLDVVYGDTDSVFVNSNVTTYPEALKIANEFKRLVNERYKLLEID 1029
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+D V++ +LLL KKKYAA+ I + S E+KG+D+ RR++S+++ +A V+ +I
Sbjct: 1030 LDAVFERILLLNKKKYAAVKIDEAGER----STEVKGLDMKRREFSKVSKDASAAVLKEI 1085
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L + + + ++ IHE + K+ + N +P+ I K+L K PE
Sbjct: 1086 LSGE-----ATEVVVEKIHELLTKLGEAVRNSEIPIDDYIIFKRLGKNPE 1130
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 95/175 (54%), Gaps = 9/175 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R F+LD E Q G V+L GKV K+ + S CV V I+R +Y+ PR++
Sbjct: 337 LRFFWLDHLE----QDGIVHLVGKVLDKQTGKYVSACVSVTGIERCLYVKPRAKRFARGF 392
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCP 326
+T VS V EF+ +Q I ++ + +++KYAF V S++LEV Y P
Sbjct: 393 ETDLDVSEEDVLDEFENFRSQVGIDQYRCKFVKRKYAFEDKDVEKGESDWLEVVYGFDQP 452
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
A+P D SG TFSH+FGT T+ E ++ +KI GPSWLE + SWCK E
Sbjct: 453 AIPMDSSGATFSHIFGTNTTPFELFVVNQKIMGPSWLEIKDIAPVEKASSWCKLE 507
>gi|336469269|gb|EGO57431.1| hypothetical protein NEUTE1DRAFT_146042 [Neurospora tetrasperma FGSC
2508]
gi|350291097|gb|EGZ72311.1| hypothetical protein NEUTE2DRAFT_90453 [Neurospora tetrasperma FGSC
2509]
Length = 1479
Score = 329 bits (843), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 186/405 (45%), Positives = 262/405 (64%), Gaps = 17/405 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + +I + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 753 GLMDYISHAETDTYFIAALALRTQILPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 812
Query: 461 HEKSYVLPDKQY--GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
H YV+PDKQ G+ + E E E G+KK Y GGLV EP+KG YDKF+++MDF
Sbjct: 813 HRNKYVVPDKQTFKGRQRIEEENAEEEGGEGGKKKDKYKGGLVFEPEKGLYDKFVLVMDF 872
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNICFTT+ L + D +P+ Q GILP I LV RRQVK
Sbjct: 873 NSLYPSIIQEYNICFTTVDRTSLSEDD--DAVPEVPKEQAQ-GILPKLIATLVSRRRQVK 929
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK N + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +
Sbjct: 930 SLMKDKNATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRS 989
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK L E+ + +VIYGDTDS+MI+ N ++ ++G++ K N+ Y+ LE+DID V++
Sbjct: 990 TKELAESNSLQVIYGDTDSVMINANKDNVAEALRVGHEFKKAVNERYRLLEIDIDNVFRR 1049
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA+++ ++ NGK + E+KG+D+ RR++ L+ E ++++IL
Sbjct: 1050 ILLQAKKKYAAINMVEV-NGKWVEKMEVKGLDMKRREYCGLSKEISNRILTEIL------ 1102
Query: 759 DYSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
S DD +Q IHE+++ I + +G VP+ I+ QL KAP
Sbjct: 1103 --SGDDTEVSVQRIHEYLRDISAKMRDGAVPVQKYIISTQLGKAP 1145
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 97/177 (54%), Gaps = 11/177 (6%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
MF+ D E G++ LFGKV K+ ++ SC V V NI RK++ LPR ++ E
Sbjct: 350 LNMFWTDYTE----VNGSLCLFGKVLNKKTKTYVSCFVKVDNILRKLFFLPRKYRVRGGE 405
Query: 272 PVSIA----QVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
+ VY+E D+I T+ + K + +KYAF LP VP S+YL++ Y PA
Sbjct: 406 ETTEEVEMMDVYNEVDEIMTKMNVGMHKIKACTRKYAFELPDVPKESQYLKLFYPYTKPA 465
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
+ G+TFSHVFGT T+ E +L + I GP WL+ +A+ F S S CK EV
Sbjct: 466 MEPTHKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDAD-FTSLRNASHCKLEV 521
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 106 FQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGR 164
+ +L++L+ G K Y+ + +YEEV E +Y + V R EDD++ DD G+GY +DGR
Sbjct: 11 YAELRELRQSGKKKTYDVGEIDELYEEVDENQYKKIVRDRLNEDDFVVDDNGEGYADDGR 70
Query: 165 EIFD 168
E +D
Sbjct: 71 EEWD 74
>gi|322693770|gb|EFY85619.1| DNA polymerase alpha catalytic subunit, putative [Metarhizium acridum
CQMa 102]
Length = 1464
Score = 328 bits (842), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 188/433 (43%), Positives = 264/433 (60%), Gaps = 24/433 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + +I + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 745 GLMDYITHMEADTHFIAALALSVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 804
Query: 461 HEKSYVLPDKQY--GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
H Y+ PDKQ G+ K+E E EA +K G LV EP++G YDKF+++MDF
Sbjct: 805 HRNKYICPDKQSFRGRQKREDENQEEAVGEGKKKDKYKGG-LVFEPERGLYDKFVLVMDF 863
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLVESRRQ 576
NSLYPSIIQE+NICFTT+ L D + + +PE D GILP I LV RRQ
Sbjct: 864 NSLYPSIIQEFNICFTTVDRTALADDE-----DAVPEVPTDQDQGILPRLIATLVGRRRQ 918
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VKALMK N + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 919 VKALMKDKNATLEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREIL 978
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
+TK L E+ + +VIYGDTDS+MI+ NV+ FK+GN+ K N YK LE+DID V+
Sbjct: 979 RSTKELAESKSLQVIYGDTDSVMINANVDSVADAFKVGNEFKKAVNDQYKLLEIDIDNVF 1038
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--DE 754
+ +LL KKKYAA+++ + +GK + E+KG+D+ RR++ L+ E K ++ +IL DE
Sbjct: 1039 RRILLQAKKKYAAINLIE-KDGKFVEKMEVKGLDMKRREYCALSKEISKHLLDEILSGDE 1097
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL----TKAPEGGKVCITQI 810
+ IHE+++ I + +P+ I QL T+ P + Q+
Sbjct: 1098 AEVV-------ITRIHEYLRDIAGKMRAQSIPVAKYIIYTQLGKGPTEYPNADSMPQVQV 1150
Query: 811 RLSRNRRGRRRRR 823
L RG+ R+
Sbjct: 1151 ALRDIARGKTIRK 1163
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 101/174 (58%), Gaps = 11/174 (6%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TK 270
FF + +I G++ LFGKV K+ S+ SC V + NI RK+Y LPR + ++ T
Sbjct: 346 FFWTDYTEIN---GSLCLFGKVLNKKTQSYVSCFVQIDNILRKLYFLPRQQRVRDGEGTD 402
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
E V +A VY E D+I T+ K+ +K + +KYAF LP VP ++Y+++ Y P +
Sbjct: 403 ETVGMADVYEEVDEIMTKMKVNMYKIKACTRKYAFELPDVPKEAQYMKLFYPYTKPQIDV 462
Query: 331 DLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
+G+T+SHVFG T+ E +L + I GP WL+ +A+ F + S CK EV
Sbjct: 463 -AAGETYSHVFGANTALFEQFVLWKNIMGPCWLKIQDAD-FGAIKNASHCKLEV 514
Score = 46.2 bits (108), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 20/116 (17%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADE--NVYEEVSEKEYTERVLKR-QEDDWIDD 153
+ K N A F +L+ L+ G K ++ ++ ++Y+EV E Y + V R EDD++ D
Sbjct: 1 MPKVNYRAKFAELQALRQSGKKAFDSYSVEDAADLYDEVDEDGYKKIVRDRLNEDDFVVD 60
Query: 154 DGGDGYVEDGREIF--------DDDIEDVP---------QKKEKHDKRKKNKNIQN 192
D G+GY +DGRE + D D +++P QKK+ + K++ N +N
Sbjct: 61 DNGEGYADDGREDWDRVRRYDSDSDADELPVRGRPNKAAQKKKDDSQAKRDANDRN 116
>gi|346319562|gb|EGX89163.1| DNA polymerase alpha catalytic subunit, putative [Cordyceps militaris
CM01]
Length = 1481
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 183/427 (42%), Positives = 275/427 (64%), Gaps = 11/427 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + +I + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 764 GLMDYITHMEADTYFIAALAISVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 823
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
H Y+ PDKQ + +++ + E G+G+KK + GGLV EP+KG YDKF+++MDFNS
Sbjct: 824 HRNKYICPDKQTFRGRQKASDENEEEAGQGKKKDKFKGGLVFEPEKGLYDKFVLVMDFNS 883
Query: 521 LYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
LYPSIIQE+NICFTT+ R +D + E +P+ Q D G+LP I LV RRQVK+L
Sbjct: 884 LYPSIIQEFNICFTTVD-RTSLSTDEDAVPE-VPKDQ-DQGVLPKLISTLVGRRRQVKSL 940
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK + +++ L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +TK
Sbjct: 941 MKDKSATAEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREILRSTK 1000
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
L E+ + +VIYGDTDS+MI+ NV+ FK+GN+ K N+ Y+ LE+DID V++ +L
Sbjct: 1001 ELAESKSLQVIYGDTDSVMINANVDCVADAFKVGNEFKKAVNEQYRLLEIDIDNVFRRIL 1060
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
L KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E K ++ +IL +
Sbjct: 1061 LQAKKKYAAINLVE-KDGKFIEQMEVKGLDMRRREYCALSKEISKHLLDEIL-----SGA 1114
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKVCITQIRLSRNRRG 818
+ + IHE++++I + +P+ I QL K P+ + Q++++
Sbjct: 1115 DTEAAVSRIHEYLREIAAKMREQTIPVAKYIIFTQLGKDPKEYPNADSMPQVQVALRDIA 1174
Query: 819 RRRRRRK 825
R++ RK
Sbjct: 1175 RKKNVRK 1181
Score = 121 bits (303), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 103/174 (59%), Gaps = 10/174 (5%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TK 270
FF + D + G++ LFGKV K++ + SC V + NI RK+Y LPR + L+ T
Sbjct: 364 FF---WTDYIEVNGSLCLFGKVLNKKSKEYVSCFVKIDNILRKLYFLPREQRLRDGDQTD 420
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
E V + VY+E D + T+ K+ +K + +KYAF LPGVP ++Y+++ Y +
Sbjct: 421 ESVEMMDVYTEVDDLMTKMKVGMYKIKACTRKYAFELPGVPKEAQYMKLLYPYTNQPIDP 480
Query: 331 DLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
+++G+TFSHVFG+ T+ E +L + + GP WL+ +A+ F + S CK EV
Sbjct: 481 NVTGETFSHVFGSNTALFEQFVLWKNVMGPCWLKIQDAD-FGAIKHASHCKLEV 533
Score = 46.2 bits (108), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 88 NSLDSNICLIDKTNKFAAFQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR 145
N+ N ++ K N A +L L+ G K Y+ +Y+EV E Y + V R
Sbjct: 10 NATRYNALVMSKVNHRAKLAELTALRKAGKKAFDSYKVEDVNALYDEVDEDGYKKIVRDR 69
Query: 146 -QEDDWIDDDGGDGYVEDGREIFD--------DDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
EDD++ DD G+GY +DGRE +D D+E+ P + + K N+ Q AK
Sbjct: 70 LNEDDFVVDDNGEGYADDGREDWDRVRQYDSESDLEERPTRGRQSKANKANR--QAEQAK 127
Query: 197 DDS 199
D+
Sbjct: 128 RDA 130
>gi|336366791|gb|EGN95137.1| hypothetical protein SERLA73DRAFT_77147 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379492|gb|EGO20647.1| hypothetical protein SERLADRAFT_441989 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1546
Score = 328 bits (841), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/411 (43%), Positives = 257/411 (62%), Gaps = 26/411 (6%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ L + Y + I ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 834 LLTFVRHCELDAHYQMAIASKVQILPLTRQLTNLAGNAWNKTLNGGRAERNEYILLHEFH 893
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAA-----------YSGGLVLEPKKGFYD 510
+ Y+ PDK +GK ++ + + G A Y GGLV EPK+G +D
Sbjct: 894 KLKYICPDKTFGKKALPPTKSDDPDDPDGEGGAGGGKGVKGKRDKYKGGLVFEPKRGLWD 953
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKL 570
K+I++MDFNSLYPSIIQEYNI FTT+ + D + P +V G+LP I L
Sbjct: 954 KYILVMDFNSLYPSIIQEYNIDFTTV------ERDESDDIPEPPPSEVAQGVLPRLIATL 1007
Query: 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
V RRQVK+LMK ++S L+QYDI+Q+ALKLTANSMYGCLGF SRF+A+PLAAL T
Sbjct: 1008 VSRRRQVKSLMKDKSVSHAKLLQYDIKQQALKLTANSMYGCLGFEYSRFYARPLAALTTF 1067
Query: 631 KGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
KGREIL +T+ L E+L +V+YGDTDS+ ++ NV + KI + K N YK LE+
Sbjct: 1068 KGREILTHTRELAESLQLDVVYGDTDSVFVNSNVTELSEALKISAEFKKAVNDRYKLLEI 1127
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
D+DG++ +LLL+KKKYAA+ + S S E+KG+D+ RR++ L+ ++V+ Q
Sbjct: 1128 DLDGIFARLLLLQKKKYAAIKVEDGSR----TSTEVKGLDMKRREYCVLSKSVSQYVLDQ 1183
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
IL + + + ++ IHE++ + ++ G V L + K+L K PE
Sbjct: 1184 ILSGE-----ATETVVERIHEYLATVGENVRGGKVKLDDFIVYKRLGKNPE 1229
Score = 91.3 bits (225), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/241 (26%), Positives = 103/241 (42%), Gaps = 52/241 (21%)
Query: 197 DDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHS---------SC 247
DDS+ T E R F+LD E G ++ GKV K ++S + S
Sbjct: 355 DDSV-ARTVFEPDGSLRFFWLDCLE----HGGKLFFIGKVLDKSSSSSANPRGKGQWMSA 409
Query: 248 CVIVQNIDRKIYLLPRSEHLKT----KEPVSI---------------------------- 275
C+ V+N+ R +++LPR + EP+S
Sbjct: 410 CITVENLQRNLFILPREYRVDAIPVDDEPLSSDDSESKGAATKKKGRPKNVENGMVMHAT 469
Query: 276 ------AQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALP 329
+ VY +FD+I + + +K R +++ YAF+ VP ++++V Y P LP
Sbjct: 470 DVVPSQSDVYDDFDRIRRKCGVKSWKGRWVKRNYAFDESKVPKEGDWMKVVYGFDDPPLP 529
Query: 330 SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEK 389
S+ + +FGT TS E +L+R+I GP WL A ISWCK E + +
Sbjct: 530 SNAQSPHIARIFGTNTSAFELFVLKRRIMGPCWLSIKNAVVEGKGISWCKLEASVSDPKD 589
Query: 390 I 390
+
Sbjct: 590 V 590
>gi|46122087|ref|XP_385597.1| hypothetical protein FG05421.1 [Gibberella zeae PH-1]
Length = 1494
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 186/407 (45%), Positives = 264/407 (64%), Gaps = 20/407 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + YI + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 741 GLLDYITHMEADTHYIAALALGVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 800
Query: 461 HEKSYVLPDKQYGKNKKEGEETG-EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDKQ ++++ EE E +G+KK Y GGLV EP+KG YDKF+++MDFN
Sbjct: 801 YRNKYICPDKQTFRSRQRAEEAQREGETAEGKKKDKYKGGLVFEPEKGLYDKFVLVMDFN 860
Query: 520 SLYPSIIQEYNICFTTI--PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
SLYPSIIQE+NICFTT+ P D ++ + P +Q D GILP I LV RRQV
Sbjct: 861 SLYPSIIQEFNICFTTVDRPDTKEGDDEVPEV----PTNQ-DQGILPRLIATLVSRRRQV 915
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K+LMK + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 916 KSLMKDKKATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREILR 975
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ + +VIYGDTDS+MI+ NV++ FK+GN+ K N+ YK LE+DID V++
Sbjct: 976 STKELAESNSLQVIYGDTDSVMINANVDNVADAFKVGNEFKKAVNEQYKLLEIDIDNVFR 1035
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA+++ + +GK I EIKG+D+ RR++ L+ E + ++++IL
Sbjct: 1036 RILLQAKKKYAAINLVE-KDGKFIEKMEIKGLDMKRREYCALSKEISQHLLNEIL----- 1089
Query: 758 TDYSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD + IHE++ +I + +P+ I QL KAP+
Sbjct: 1090 ---SGDDTEVSIARIHEYLNEIAGKMREQSIPVQKYIIHTQLGKAPQ 1133
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 120/241 (49%), Gaps = 19/241 (7%)
Query: 164 REIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDH--ENKKVFRMFFLDAFE 221
++I DI+ P + N + NA + L + + E K + ++ DA E
Sbjct: 275 KKIIKADIDPTPASSSPVKPNVASVNATSWNALTERLNVVSSSPAEVKSIGKIDHKDAIE 334
Query: 222 ----------DIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
D + G+++LFGKV K+ S+ SC V V NI RK+Y LPR ++
Sbjct: 335 EDGSLNFFWTDYTELNGSLFLFGKVLNKKTKSYVSCFVKVDNILRKLYFLPREHRMQDGE 394
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + QVY E D + T+ + +K + +KYAF L VP ++Y+++ Y P
Sbjct: 395 ETGEEVEMMQVYDEIDTMMTKMNVGMYKIKACTRKYAFELRDVPKEAQYMKLLYPYNKPE 454
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA--EKFPSRISWCKYEVQCN 385
+ + G+T+SHVFG+ TS E +L + I GP WL+ +A +K S CK EV +
Sbjct: 455 IDPNRPGETYSHVFGSNTSLFEQFVLWKNIMGPCWLKIEDADFDKL-KNASHCKLEVVAD 513
Query: 386 Q 386
Sbjct: 514 H 514
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 104 AAFQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +LK L+ G K Y+ +++Y+EV E Y + V +R +DD++ DD G+GY
Sbjct: 5 ARLAELKALRASGKKAFDNYKVADVDDLYDEVDEDGYKKVVRERLNQDDFVVDDNGEGYA 64
Query: 161 EDGREIFD 168
+DGRE +D
Sbjct: 65 DDGREDWD 72
>gi|164424154|ref|XP_963131.2| hypothetical protein NCU07870 [Neurospora crassa OR74A]
gi|157070398|gb|EAA33895.2| hypothetical protein NCU07870 [Neurospora crassa OR74A]
Length = 1479
Score = 328 bits (840), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 186/405 (45%), Positives = 261/405 (64%), Gaps = 17/405 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + +I + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 753 GLMDYISHAETDTYFIAALALRTQILPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 812
Query: 461 HEKSYVLPDKQY--GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
H YV+PDKQ G+ + E E E G+KK Y GGLV EP+KG YDKF+++MDF
Sbjct: 813 HRNKYVVPDKQTFKGRQRIEEENAEEEGGEGGKKKDKYKGGLVFEPEKGLYDKFVLVMDF 872
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNICFTT+ L + D +P+ Q GILP I LV RRQVK
Sbjct: 873 NSLYPSIIQEYNICFTTVDRTSLSEDD--DAVPEVPKEQAQ-GILPKLIATLVSRRRQVK 929
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK N + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +
Sbjct: 930 SLMKDKNATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRS 989
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK L E+ + +VIYGDTDS+MI+ N ++ ++G++ K N+ Y+ LE+DID V++
Sbjct: 990 TKELAESNSLQVIYGDTDSVMINANKDNVAEALRVGHEFKKAVNERYRLLEIDIDNVFRR 1049
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA+++ ++ NGK + E+KG+D+ RR++ L+ E ++++IL
Sbjct: 1050 ILLQAKKKYAAINMVEV-NGKWVEKMEVKGLDMKRREYCGLSKEISNRILTEIL------ 1102
Query: 759 DYSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
S DD +Q IHE+++ I + G VP+ I+ QL KAP
Sbjct: 1103 --SGDDTEVSVQRIHEYLRDISAKMREGAVPVQKYIISTQLGKAP 1145
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/177 (38%), Positives = 97/177 (54%), Gaps = 11/177 (6%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
MF+ D E G++ LFGKV K+ ++ SC V V NI RK++ LPR ++ E
Sbjct: 350 LNMFWTDYTE----VNGSLCLFGKVLNKKTKTYVSCFVKVDNILRKLFFLPRKYRVRGGE 405
Query: 272 PVSIA----QVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
+ VY+E D+I T+ + K + +KYAF LP VP S+YL++ Y PA
Sbjct: 406 ETTEEVEMMDVYNEVDEIMTKMNVGMHKIKACTRKYAFELPDVPKESQYLKLLYPYTKPA 465
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
+ G+TFSHVFGT T+ E +L + I GP WL+ +A+ F S S CK EV
Sbjct: 466 MEPTHKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDAD-FTSLRNASHCKLEV 521
Score = 50.4 bits (119), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 106 FQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGR 164
+ +L++L+ G K Y+ + +YEEV E +Y + V R EDD++ DD G+GY +DGR
Sbjct: 11 YAELRELRQSGKKKTYDVGEIDELYEEVDENQYKKIVRDRLNEDDFVVDDNGEGYADDGR 70
Query: 165 EIFD 168
E +D
Sbjct: 71 EEWD 74
>gi|294881182|ref|XP_002769285.1| dna polymerase alpha catalytic subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239872563|gb|EER02003.1| dna polymerase alpha catalytic subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 1438
Score = 327 bits (839), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 199/464 (42%), Positives = 275/464 (59%), Gaps = 49/464 (10%)
Query: 380 YEVQCNQMEKIRSKQGLIYLIGIVEF----------IKFTMLHSSYIIKIMCELNVLPLA 429
Y++ M+ +++ + + L +V+F + T+ + +++ L VL L
Sbjct: 737 YDLGSLSMKLLKTARAPVSLDSLVKFYEDPRALSALAEHTLTDAVLQLRVGWALQVLSLT 796
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK--------EGEE 481
Q+TN+ GN+ S +L R+ERNE LL+H FH K +++PDK+ ++K E +
Sbjct: 797 RQLTNLAGNLWSHSLQNKRAERNEILLVHEFHRKKFIVPDKERPGDRKSHQVDVFDENGD 856
Query: 482 TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML 541
T A G RKKAAY+GGLVLEPK G YDK ++L+DFNSLYPSII+EYNICFTT+
Sbjct: 857 TKAATAGPRRKKAAYAGGLVLEPKAGLYDKLVLLLDFNSLYPSIIREYNICFTTVERLDA 916
Query: 542 QDSDITTLCEYLPE-----HQVDTGILPSEIKKLVESRRQVKALMK---QPNLSSDLLMQ 593
DS + +PE ILP I +LVESR+ VK L+K P + Q
Sbjct: 917 HDSALEENAGAIPELPKRAPGEGDAILPQVITRLVESRKDVKKLLKTCSNPKTGN----Q 972
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIY 652
DIRQKALKLTANSMYGCLGF NSRF+A+P+AAL+T GRE L T +VEN L +V+Y
Sbjct: 973 LDIRQKALKLTANSMYGCLGFSNSRFYAKPIAALITRTGRETLQATVDIVENQLRLDVVY 1032
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSI 712
GDTDS+ + +D +IG QI +E NK YK+LELD+DGV+K +LLLKKKKYA + +
Sbjct: 1033 GDTDSIFVHTGTEAFDQAMRIGAQIMAEINKRYKKLELDVDGVFKRLLLLKKKKYAGVKV 1092
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD--EQSYTDYSLDDRLQNI- 769
+ G I +E KG+D+VRRDW L+ + G V+ +L +S T S D+ L ++
Sbjct: 1093 IDWAQG--IAEKEYKGLDLVRRDWCPLSKKMGDEVLRCLLGLRAESPTPASSDNGLADVD 1150
Query: 770 -------------HEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
H+++K I +DN +PL ITK LTK P
Sbjct: 1151 RSAQEAEHVVEWLHDYVKSISLKMDNDEIPLEDYVITKALTKMP 1194
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 108/208 (51%), Gaps = 22/208 (10%)
Query: 195 AKDDSLPLATDHENKKVFRMFFLDAFEDIY--KQPGTVYLFGKVFVKENNSHS------S 246
A+D L + E+ + M+ LD +ED+ K P +YLFGK ++ + S S
Sbjct: 329 AEDHGLDAVKEEEDGSLM-MYLLDVYEDVLPNKTPA-LYLFGKTRRRDGKASSGRAEYES 386
Query: 247 CCVIVQNIDRKIYLLPRSEHLKTKEP-VSIAQVYSEFDQI-----ATQYKILDFKSRKIE 300
CCV+V NI R + LPR + E + V EF+ + + +K + +
Sbjct: 387 CCVVVTNIMRNCFFLPREQSEDEAECKAACYSVMQEFESMRKKSGGVLAAVNRYKCKFVW 446
Query: 301 KKYAFN-LPGVPDLS-EYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIK 358
+ Y F+ + G+P +L+V YS+ CPALPS L G +FSHVFGT TS E L++R+I
Sbjct: 447 RNYCFDQVHGIPHGRLGFLKVVYSSNCPALPSGLEGKSFSHVFGTNTSLTELFLIKRRIM 506
Query: 359 GPSWLEFPEAEKFPS----RISWCKYEV 382
GP W++ PS ++SWC EV
Sbjct: 507 GPCWIQISSGSFNPSTTLNKLSWCAREV 534
>gi|408397181|gb|EKJ76331.1| hypothetical protein FPSE_03586 [Fusarium pseudograminearum CS3096]
Length = 1456
Score = 327 bits (838), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 185/407 (45%), Positives = 264/407 (64%), Gaps = 20/407 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + YI + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 743 GLLDYITHMEADTHYIAALALGVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 802
Query: 461 HEKSYVLPDKQYGKNKKEGEETG-EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDKQ ++++ EE E +G+KK Y GGLV EP+KG YDKF+++MDFN
Sbjct: 803 YRNKYICPDKQSFRSRQRAEEAQREGETAEGKKKDKYKGGLVFEPEKGLYDKFVLVMDFN 862
Query: 520 SLYPSIIQEYNICFTTI--PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
SLYPSIIQE+NICFTT+ P D ++ + P +Q D GILP I LV RRQV
Sbjct: 863 SLYPSIIQEFNICFTTVDRPDTKEGDDEVPEV----PTNQ-DQGILPRLIATLVSRRRQV 917
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K+LMK + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 918 KSLMKDKKATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREILR 977
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ + +VIYGDTDS+MI+ NV++ FK+GN+ K N+ YK LE+DID V++
Sbjct: 978 STKELAESNSLQVIYGDTDSVMINANVDNVADAFKVGNEFKKAVNEQYKLLEIDIDNVFR 1037
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E + ++++IL
Sbjct: 1038 RILLQAKKKYAAINLVE-KDGKFIEKMEVKGLDMKRREYCALSKEISQHLLNEIL----- 1091
Query: 758 TDYSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD + IHE++ +I + +P+ I QL KAP+
Sbjct: 1092 ---SGDDTEVSIARIHEYLNEIAGKMREQSIPVQKYIIHTQLGKAPQ 1135
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFD 283
G+++LFGKV K+ S+ SC V V NI RK+Y LPR ++ T + V + QVY E D
Sbjct: 353 GSLFLFGKVLNKKTKSYVSCFVKVDNILRKLYFLPREHRMQDGEETGDEVEMMQVYDEID 412
Query: 284 QIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGT 343
+ T+ + +K + +KYAF L VP ++Y+++ Y P + + G+T+SHVFG+
Sbjct: 413 TMMTKMNVGMYKIKACTRKYAFELRDVPKEAQYMKLLYPYSKPEIDPNRPGETYSHVFGS 472
Query: 344 KTSFLENLLLERKIKGPSWLEFPEA--EKFPSRISWCKYEVQCNQ 386
TS E +L + I GP WL+ +A +K S CK EV +
Sbjct: 473 NTSLFEQFVLWKNIMGPCWLKIEDADFDKL-KNASHCKLEVVADH 516
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 104 AAFQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +LK L+ G K Y+ +++Y+EV E Y + V +R +DD++ DD G+GY
Sbjct: 5 ARLAELKALRASGKKAFDNYKVADVDDLYDEVDEDGYKKVVRERLNQDDFVVDDNGEGYA 64
Query: 161 EDGREIFD 168
+DGRE +D
Sbjct: 65 DDGREDWD 72
>gi|308806656|ref|XP_003080639.1| DNA-directed DNA polymerase alpha catalytic subunit, putative (ISS)
[Ostreococcus tauri]
gi|116059100|emb|CAL54807.1| DNA-directed DNA polymerase alpha catalytic subunit, putative (ISS)
[Ostreococcus tauri]
Length = 1530
Score = 327 bits (837), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 178/408 (43%), Positives = 260/408 (63%), Gaps = 17/408 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
++ IK T + + + +M ++ V+PL Q++N+ GN+ S+TL R++R E+LLLH F
Sbjct: 789 SLMHLIKCTEIDAKLSLHLMFKMEVIPLTKQLSNIAGNLWSKTLGHTRAQRVEYLLLHEF 848
Query: 461 HEKSYVLPDKQYGKNKKE-GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
H++ ++LPD+ K ++ G+ G+K +Y+GGLVLEPKKG YD F++++D+
Sbjct: 849 HKRKHILPDRLSSKERRRVAAVNGDEEDDGGKKGPSYAGGLVLEPKKGLYDDFVLVLDYQ 908
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLP---EHQVDTGILPSEIKKLVESRRQ 576
SLYPSIIQEYNIC+TT+ R D D T+ LP + D +LP+ I +V SR+
Sbjct: 909 SLYPSIIQEYNICYTTVK-RHFNDGDDPTI--QLPPSVSNDKDFAVLPAVIASIVRSRKD 965
Query: 577 VKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
VK LM + SD QYD+RQ ALKLTANSMYGCLGF SRF+A+ +AAL+T++GR
Sbjct: 966 VKGLMAK---ESDPARKKQYDLRQLALKLTANSMYGCLGFSQSRFYAEAIAALITSQGRT 1022
Query: 635 ILLNTKSLV-ENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
IL +T L + + +VIYGDTDS+M++ + D GN++ N+ Y++L L+ D
Sbjct: 1023 ILQHTVDLARQKCDLDVIYGDTDSIMVNTGTKNLDQARAAGNKLIRFVNREYRKLVLEED 1082
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
++ MLLLKKKKYAA+ + NG + E+KG+D+VRRDW+ L E GK Q L+
Sbjct: 1083 YAFRSMLLLKKKKYAAMKVVNGPNGTKMTELEMKGLDIVRRDWAPLVKEIGK----QTLE 1138
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
E D L++R+ IH+ +++IR ++ VPL ITKQLTKA E
Sbjct: 1139 ELLEVDGELEERVTAIHDLLREIRVEMVANRVPLDKYIITKQLTKAVE 1186
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 102/250 (40%), Gaps = 64/250 (25%)
Query: 190 IQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHS--SC 247
++ P D S+P FF+DA E+ + PGTV+LFG+V V S
Sbjct: 315 VELPKDADGSIPF------------FFMDAHEE-RESPGTVFLFGRVPVSSEPGAETISA 361
Query: 248 CVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILD-------------- 293
C +VQN++R +Y++P + + + ++ + D+ ++K
Sbjct: 362 CAVVQNMERCMYVIPTASTFDDPDD-ELMELADKMDEARRKFKTCTDADKLEEAKVAAQK 420
Query: 294 -----------------------FKSRKIE--------KKYAFNLPGVPDLSEY-LEVRY 321
K R IE + Y F +P S + L+V+
Sbjct: 421 AKADLMKRLVPKSGALRAEIKELLKKRGIENSKITIVRRHYCFERKDIPHGSLFVLKVKT 480
Query: 322 SAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCK 379
A A PSDL G F + GT+ LE L L+ K+KGPSW+ A PS + SWCK
Sbjct: 481 PATQSAFPSDLKGTNFIAMMGTQAPMLELLTLKSKLKGPSWISLHGASIVPSEKQKSWCK 540
Query: 380 YEVQCNQMEK 389
E+ K
Sbjct: 541 LEMSIPHAHK 550
>gi|384252932|gb|EIE26407.1| hypothetical protein COCSUDRAFT_52325 [Coccomyxa subellipsoidea
C-169]
Length = 1243
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 189/416 (45%), Positives = 267/416 (64%), Gaps = 30/416 (7%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++E ++ T + + + LN+LPL+ Q++ + G++ SRTL G R++R E LLLH F+
Sbjct: 509 LMELVQHTESDAWLALSLAMHLNLLPLSRQLSCLSGSLWSRTLQGQRAQRIEMLLLHEFY 568
Query: 462 EKSYVLPDKQYGKNKK-------------EGEETGEANKGKGRKKAAYSGGLVLEPKKGF 508
+ ++LPDK G+ ++ +GE E G + KA Y+GGLVLEPKKG
Sbjct: 569 ARKFLLPDKLSGRERERLARRQHAAAHADDGEAFEEVKAGGKKGKAQYAGGLVLEPKKGL 628
Query: 509 YDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
Y+ ++L+DFNSLYPSIIQEYNICFTT VR +D I L E P H D +LP I+
Sbjct: 629 YNSIVLLLDFNSLYPSIIQEYNICFTT--VRRPKDGSIAPLPE--PSH--DLAVLPKVIR 682
Query: 569 KLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAA 626
LV+ RR+VK+L+ D + Q DIRQ+ALKLTANSMYGCLGF SRFFA+PLA
Sbjct: 683 GLVQRRREVKSLLAN---ERDGVRRQQLDIRQQALKLTANSMYGCLGFSASRFFARPLAE 739
Query: 627 LVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY 685
LVTA+GR+IL +T LV++ + EVIYGDTDS+M+ +V + +G ++K E NK Y
Sbjct: 740 LVTAQGRDILQSTVDLVQSSVGLEVIYGDTDSIMVRTDVAKEEEARAMGARVKREVNKRY 799
Query: 686 KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGK 745
K LE+++D +YK MLLLKKKKYAA+ + + + G+ + +E KG+D+VRRDW LA + G
Sbjct: 800 KLLEIELDAMYKCMLLLKKKKYAAIKLDRDAAGRTVEVKEAKGLDMVRRDWCALAKDCGN 859
Query: 746 FVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + +IL + +D + IH ++++R +D G V L I KQLTK PE
Sbjct: 860 YALDEILSGR-----PCEDVVSAIHARLRQVREKVDAGAVTLDKFVIHKQLTKRPE 910
Score = 122 bits (307), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/264 (31%), Positives = 128/264 (48%), Gaps = 36/264 (13%)
Query: 155 GGDGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRM 214
GGD ++ G + DD + P+ +++ D K + + D SLPL
Sbjct: 24 GGDAGMDTG--MPDDPPPESPRGEDRPDGEVKEEPKEE-WVDDGSLPLV-----DGTLPF 75
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR----------- 263
F LDA E+ PGTVYLFGKV H SCC +++ R I+ +P+
Sbjct: 76 FLLDAHEEA-ATPGTVYLFGKV--PNGGQHQSCCAVLEGCMRCIFFVPQPGTFTGAELTR 132
Query: 264 -----SEHLKTKEPV------SIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
+ + K P+ A + +E + ++ I F + + + YAF L VP
Sbjct: 133 LEAEAAANPGAKGPLLRHLHEQAAALKAEVRAVLAEHGIDKFVIKPVRRNYAFELDSVPH 192
Query: 313 LSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF--PEAE 369
++ L+VRYSA P+LP+ L G+ F VFG + S LE++LL+R+I GPSW+ P
Sbjct: 193 GEQWVLKVRYSAAKPSLPNGLEGEHFVGVFGAQQSVLESVLLKRRIMGPSWISLSCPTRV 252
Query: 370 KFPSRISWCKYEVQCNQMEKIRSK 393
++SWCK EV+ + + SK
Sbjct: 253 DASKQVSWCKLEVKVEGHKNVSSK 276
>gi|213404058|ref|XP_002172801.1| DNA polymerase alpha catalytic subunit [Schizosaccharomyces japonicus
yFS275]
gi|212000848|gb|EEB06508.1| DNA polymerase alpha catalytic subunit [Schizosaccharomyces japonicus
yFS275]
Length = 1314
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 183/430 (42%), Positives = 264/430 (61%), Gaps = 19/430 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ L + +I + + +L L+ +TN+ GN SRTL G R+ERNE++LLH F
Sbjct: 635 GLLDYLLHCELDTYFISALAFKTQILQLSKNLTNIAGNSWSRTLTGTRAERNEYILLHEF 694
Query: 461 HEKSYVLPDKQYGKNKK----EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
+ Y+LPDKQY +++ + EET GK + K LV EPKKG YD +I++M
Sbjct: 695 KKNGYILPDKQYQNSREVDVVDPEETPADTLGKKKDKYKGG--LVFEPKKGLYDTYILVM 752
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
DFNSLYPSIIQEYNICFTT+ + + + +P ++ GI P I LV R+Q
Sbjct: 753 DFNSLYPSIIQEYNICFTTVHRKHCTSKNGADVVPDVPNSSLEQGIFPRLIANLVNRRKQ 812
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
+KAL+K N + +Q+DI+Q+ALKLTANSMYGCLG+ SRF+A+PLA LVT KGRE+L
Sbjct: 813 IKALLKDKNATPVQRLQWDIKQQALKLTANSMYGCLGYTKSRFYARPLAVLVTYKGREVL 872
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
+TK L + + +VIYGDTDS+MI+ N N+ +IGN+ K+ N+ Y++LE+DID VY
Sbjct: 873 TSTKELADLMGLQVIYGDTDSVMINTNANNMTDALRIGNEFKNRVNERYRKLEIDIDNVY 932
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
+ MLL KKKYAAL + + GK + +IKG+D+ RR++ LA EA K+ + QIL +
Sbjct: 933 QRMLLHAKKKYAALQMD--AQGKPVL--DIKGLDMKRREFCALAKEASKYSLDQILSGE- 987
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRL 812
+ + NIH ++ + +G I +L KAPE G + Q+ L
Sbjct: 988 ----LTETVISNIHAYLVDFAQKMRSGKFSANKFIIFNKLGKAPESYPNGKTMPFVQVAL 1043
Query: 813 SRNRRGRRRR 822
+ RG R
Sbjct: 1044 KKKARGENVR 1053
Score = 108 bits (270), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/166 (37%), Positives = 84/166 (50%), Gaps = 16/166 (9%)
Query: 234 GKVFVKENNSHSSCCVIVQNIDRKIYLLPR-------------SEHLKTKEPVSIAQVYS 280
V +EN ++SS V + I R +Y LPR + T S+ +V +
Sbjct: 247 SPVPARENKTYSSAFVKLDGIQRHLYFLPRPLDVDEEKDEEASASSTPTPTHTSLDEVQA 306
Query: 281 EFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHV 340
E + ++ I ++K + KYAF LP VP +EYL V YS K PA P DLSG TFS V
Sbjct: 307 EVSALFSKSGIHEWKCKVDRFKYAFELPDVPAETEYLHVLYSYKYPAFPFDLSGQTFSRV 366
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQC 384
FGT T+ E +LE+ + GP WL + F S SWC+ E C
Sbjct: 367 FGTHTALFEQFVLEKDVMGPCWLRI-RSPDFDSVKNTSWCRLETAC 411
Score = 41.6 bits (96), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADEN--VYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVE 161
A +L+ L+ G + +EN +Y+ V E EY V KR EDD++ DD G GYVE
Sbjct: 37 ALSQLRALRESGKTRASVYETEENPELYDSVDEDEYRRVVRKRLDEDDFVVDDNGAGYVE 96
Query: 162 DG 163
+G
Sbjct: 97 NG 98
>gi|395331917|gb|EJF64297.1| DNA polymerase alpha catalytic subunit [Dichomitus squalens LYAD-421
SS1]
Length = 1462
Score = 326 bits (836), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 186/409 (45%), Positives = 257/409 (62%), Gaps = 20/409 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ L + Y + + ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 756 LLNFVRHCELDAHYQMALASKVQLLPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFH 815
Query: 462 EKSYVLPDKQYGK-------NKKEGEETGE-ANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
Y+ PDK YGK +KE E GE A K K+ Y GGLV EPK+G +DK+I
Sbjct: 816 RLKYICPDKLYGKKAATAMKAEKEENEDGEGATKTTKSKRDKYKGGLVFEPKRGLWDKYI 875
Query: 514 ILMDFNSLYPSIIQEYNICFTTI-PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVE 572
++MDFNSLYPSIIQEYNI FTT+ P +D P QVD G+LP I LV
Sbjct: 876 LVMDFNSLYPSIIQEYNIDFTTVEPAE--EDEGGEEKIPEPPSSQVDQGVLPRLIATLVN 933
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
RR VKALMK + L+Q+DI+Q ALKLTANSMYGCLGF SRF+A+PLAAL T KG
Sbjct: 934 RRRAVKALMKDKKATPAQLLQWDIKQMALKLTANSMYGCLGFEYSRFYARPLAALTTFKG 993
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL +T+ L E++ +V+YGDTDS+ ++ NV D KI + K N YK LE+D+
Sbjct: 994 REILTHTRELAESMQLDVVYGDTDSVFVNSNVTDLAEALKISAEFKKAVNDRYKLLEIDL 1053
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DG++K +LLL+KKKYAA+ + + S E+KG+D+ RR++ L+ +V+ QIL
Sbjct: 1054 DGIFKRLLLLQKKKYAAVKVEDSTR----TSTEVKGLDMKRREYCALSKTVSGYVLDQIL 1109
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + + ++NIHE++ I + G + L I K+L K PE
Sbjct: 1110 SGE-----ATETVVENIHEYLVTIGQQVRAGKIKLEEFIIHKRLGKNPE 1153
Score = 110 bits (274), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 101/190 (53%), Gaps = 15/190 (7%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR-------- 263
R ++LD E G +Y GK K+ S CV V+N++R +++LPR
Sbjct: 350 LRFYWLDYLE----HDGRLYFIGKTQDKKTKVWVSICVTVENLERNLFVLPRERRMEEDE 405
Query: 264 --SEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVR 320
E +T ++ +YS+FD++ + +I FK++ +++KYAF VP + ++L+V
Sbjct: 406 YTGEMYETDVVPTLGDIYSDFDKLRQKARIGKFKAKFVKRKYAFGEKDVPREERDWLKVV 465
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
Y P LP++ S FS +FGT TS E L+L+RKI GP WL+ E +SWCK
Sbjct: 466 YPFTEPQLPNNASSPNFSRIFGTNTSAFELLVLKRKIMGPCWLQIKHPEIDNKGVSWCKV 525
Query: 381 EVQCNQMEKI 390
E + + I
Sbjct: 526 EATVSDPKDI 535
Score = 46.6 bits (109), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 115 QGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGREIFDDDIED 173
+G K +Y+ D ++Y+EV+E EY V R DD++ DDG GYV+ G DD E+
Sbjct: 22 EGGKREYKIEDDSSIYDEVTENEYKTIVKGRLARDDFVVDDGFSGYVDTGV----DDFEE 77
Query: 174 VPQKKEKHDKRKKNKN 189
+E ++R KNK+
Sbjct: 78 AGDVEEDEEERPKNKS 93
>gi|190344967|gb|EDK36762.2| hypothetical protein PGUG_00860 [Meyerozyma guilliermondii ATCC 6260]
Length = 1438
Score = 326 bits (835), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 252/402 (62%), Gaps = 27/402 (6%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--Y 472
Y +I + +L L+ Q+TN+ GN S TL G R+ RNEF+LLH FH Y++PDK+ +
Sbjct: 721 YTAEIAFAIQILSLSKQLTNIAGNAWSHTLSGTRAGRNEFILLHEFHRNKYIVPDKEDKF 780
Query: 473 GKNKKEGEET------GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSII 526
KN +E ++ KK Y GGLV EP+KG + +I++MDFNSLYPSII
Sbjct: 781 HKNSSYQQEAKVENNEDDSTTVTSNKKPKYQGGLVFEPEKGLHKNYILVMDFNSLYPSII 840
Query: 527 QEYNICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
QEYNICFTT+ V ++ D+ L P+ + G+LP + LV RR+VK L+
Sbjct: 841 QEYNICFTTVDRDDFNVSHDEEKDMPVL----PDRESVQGVLPRLLNTLVSRRREVKKLL 896
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K P S QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T+
Sbjct: 897 KDPKNSLVERAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQ 956
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
L E++ V+YGDTDS+MI V D+ KIG Q K N+ YK LE+DID V+K +LL
Sbjct: 957 LAESIGLRVVYGDTDSVMIDTGVTDFKEAIKIGEQFKLHVNERYKLLEIDIDNVFKRLLL 1016
Query: 702 LKKKKYAALSIS---KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
KKKYAA++ S K K++ E+KG+D+ RR++ QL+ E F++ +IL
Sbjct: 1017 HAKKKYAAMNASIDRKTGEEKVVL--EVKGLDMRRREYCQLSKEISTFILEKIL-----A 1069
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
D + L +++++++K+ + +G +P+ +I +L+K P
Sbjct: 1070 DSDPEQALMDVYDYLEKMSAKIKSGEIPVNKFQINTRLSKDP 1111
Score = 102 bits (254), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 102/197 (51%), Gaps = 19/197 (9%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR-----SEH 266
F+MF+LD E ++ LFGKV KE S V V I R++Y LPR
Sbjct: 301 FKMFWLDYCE----VDSSLLLFGKVLTKEGKLVSGV-VQVNGISRELYFLPREFRKVDGM 355
Query: 267 LKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
T++PV+ VY E + +++ + +++K + KYAF L G+P ++YL++ K
Sbjct: 356 EDTEQPVTTDDVYHEIAPHLLSKFGLEMIRAKKEKMKYAFELSGIPRDTDYLKILLPFKT 415
Query: 326 P-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWC 378
P LPSDL G+TF HVFGT S E+ +L++ I GP WL+ + F + S C
Sbjct: 416 PKSRNLVLPSDLEGETFRHVFGTNASIFESFVLQQNIMGPCWLDI-KGGNFEAIQNTSHC 474
Query: 379 KYEVQCNQMEKIRSKQG 395
+ EV + + + G
Sbjct: 475 QVEVAVDAPKAVTPISG 491
>gi|407927318|gb|EKG20213.1| DNA-directed DNA polymerase family B pol2 [Macrophomina phaseolina
MS6]
Length = 1467
Score = 326 bits (835), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 187/426 (43%), Positives = 265/426 (62%), Gaps = 14/426 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ +++ + +I I ++ +LPL +TN+ GN RTL G R+ERNE++LLH F
Sbjct: 744 GLMNYVRHCEADTFFIAAIALKVQMLPLTKVLTNLAGNSWGRTLGGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGK-NKKEGEETGEANKGKGRKKAAYSGG-LVLEPKKGFYDKFIILMDF 518
H Y+ PDK +GK NKK EET E +G KK G LV EP+KG YD+FI++MDF
Sbjct: 804 HRNKYICPDKVFGKGNKKPSEETIEGEEGADAKKKDKYKGGLVFEPEKGLYDRFILVMDF 863
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQE+NICFTT V + S+ +P D GILP I LV RR+VK
Sbjct: 864 NSLYPSIIQEFNICFTT--VERAEISEEEEKVPEVPSASQDQGILPRLIATLVSRRREVK 921
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
LMK P+ SSD L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 922 KLMKDPSASSDQLATWDIKQMALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREILRR 981
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK L E+ VIYGDTDS+MI+ N+++ FK+GN+ K + N YK LE+DID V++
Sbjct: 982 TKDLAESKMLRVIYGDTDSVMINTNMDNLQDAFKVGNEFKRDVNDSYKLLEIDIDNVFRR 1041
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA+++ ++ +GK E+KG+D+ RR++ L+ E +++ +L +
Sbjct: 1042 LLLHAKKKYAAINMVEV-DGKWTEKLEVKGLDMRRREYCALSKETSSKLLNFLLSGEDP- 1099
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK----APEGGKVCITQIRLSR 814
+ ++ IHE+++++ + + VP+ I QL K P G + Q+ L
Sbjct: 1100 ----ETVVEKIHEYLRELAAQMRDFKVPVQKYTIFTQLGKDPKEYPNGNSMPSVQVALRL 1155
Query: 815 NRRGRR 820
+G+
Sbjct: 1156 MAKGKH 1161
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 97/184 (52%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
R F++D E G++ LFGK+ K S S V + NI RK++ LPR K
Sbjct: 343 LRFFWIDYTE----VKGSLCLFGKIRDKSTGSFVSAFVKIDNILRKLFFLPREYRQKHGR 398
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T+E V + VY E D + +++++ K + +KYAF L +P +EYL++ Y
Sbjct: 399 DTEEEVGMGDVYQEVDGLMSRFQVDMHKIKPCTRKYAFELREIPKEAEYLKLLYPYTKQQ 458
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP DL G+TFSHVFGT TS E +L + I GP WL+ A + SWCK E ++
Sbjct: 459 LPMDLKGETFSHVFGTNTSIFEQFVLWKNIMGPCWLKIDGANLNAVNNASWCKLECLVDK 518
Query: 387 MEKI 390
I
Sbjct: 519 PNNI 522
Score = 43.5 bits (101), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 100 TNKFAAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGG 156
++ A +L+ L+ G Y+ ++ +YEEV E+ Y + V R +DD++ DD G
Sbjct: 2 ASRAARLAELRALRAAGKTRLDSYQVEEEKQLYEEVDEEGYKKVVRSRLDQDDFVVDDNG 61
Query: 157 DGYVEDGREIFDDDIEDVP 175
+GY +DGRE D D E +P
Sbjct: 62 EGYADDGRE--DWDTERLP 78
>gi|389639082|ref|XP_003717174.1| DNA polymerase alpha catalytic subunit [Magnaporthe oryzae 70-15]
gi|351642993|gb|EHA50855.1| DNA polymerase alpha catalytic subunit [Magnaporthe oryzae 70-15]
gi|440475723|gb|ELQ44386.1| DNA polymerase alpha catalytic subunit [Magnaporthe oryzae Y34]
gi|440486034|gb|ELQ65937.1| DNA polymerase alpha catalytic subunit [Magnaporthe oryzae P131]
Length = 1482
Score = 326 bits (835), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 184/431 (42%), Positives = 267/431 (61%), Gaps = 17/431 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + +I + VLPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 761 GLMDYLTHIEADTYFIAALALRTQVLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 820
Query: 461 HEKSYVLPDKQYGKNK-KEGEETGEANKGKGRKKAAYSGG-LVLEPKKGFYDKFIILMDF 518
H Y+ PDK+ K + + EE E G+ KK G LV EP+KG YDKF+++MDF
Sbjct: 821 HRNKYICPDKRAFKGRQRAAEEDEEGQAGETGKKKDKYKGGLVFEPEKGLYDKFVLVMDF 880
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNICFTT+ + D + + E +P ++D GILP I LV RRQVK
Sbjct: 881 NSLYPSIIQEYNICFTTVDRQSRIDDEEDAVPE-VPPAELDQGILPRLIATLVSRRRQVK 939
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK + + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +
Sbjct: 940 SLMKDKSATPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAILTTYKGREILRS 999
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK L EN + +VIYGDTDS+MI+ NV++ + F++G K N+ Y+ LE+DID V++
Sbjct: 1000 TKELAENNSLQVIYGDTDSVMINANVDNVAAAFRVGQDFKRAVNERYRLLEIDIDNVFRR 1059
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--DEQS 756
+LL KKKYAA+++ ++ +GK + E+KG+D+ RR++ L+ E ++ +IL DE
Sbjct: 1060 ILLQAKKKYAAINMVEV-DGKFVEKMEVKGLDMRRREYCALSKEISARILDEILSGDETE 1118
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRL 812
+ + IHE+++ I + +P I QL K P+ G + Q+ L
Sbjct: 1119 VS-------VTRIHEYLRDIAAKMRAQEIPPQKYIILTQLGKGPKEYPNGDSMPQVQVAL 1171
Query: 813 SRNRRGRRRRR 823
RG+ R+
Sbjct: 1172 REIARGKTIRK 1182
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 105/205 (51%), Gaps = 16/205 (7%)
Query: 202 LATDHENKKVFRMFFLDAFE----------DIYKQPGTVYLFGKVFVKENNSHSSCCVIV 251
+++ E + V +M F +A E D + G++ LFGKV K+ ++ SC + V
Sbjct: 326 VSSQTETRTVGKMDFKNAVEADGSLRFFWTDYTEVNGSLCLFGKVLDKKTKAYVSCFIKV 385
Query: 252 QNIDRKIYLLPRSEHLK-----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFN 306
NI RK+Y LPR + EPV + VYSE D I T+ K+ K + +KYAF
Sbjct: 386 DNILRKLYFLPRENRHRDGEDCPDEPVQMMDVYSEVDDIMTKMKVDMHKIKACTRKYAFE 445
Query: 307 LPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFP 366
LP VP +YL++ Y P L SG+TFS VFGT T E +L + I GP WL+
Sbjct: 446 LPDVPKEGKYLKLLYPYTKPQLDLARSGETFSRVFGTNTGLFEQFVLLKNIMGPCWLKIG 505
Query: 367 EAEKFPSR-ISWCKYEVQCNQMEKI 390
+A+ R S C+ EV +I
Sbjct: 506 DADFGAIRNASHCRLEVLVEHPNQI 530
Score = 47.4 bits (111), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 99 KTNKFAAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDG 155
K NK + +L+ L+ G K YE + ++YEEV E Y + V +R +DD++ DD
Sbjct: 4 KANKRSKLAELRALRQAGKKTFDTYEVEQEGSLYEEVDEDSYKKIVRERLNQDDFVVDDN 63
Query: 156 GDGYVEDGREIFD 168
G+GY +DGRE +D
Sbjct: 64 GEGYADDGREDWD 76
>gi|380710181|gb|AFD98849.1| DNA polymerase alpha catalytic subunit [Solanum lycopersicum]
Length = 1561
Score = 326 bits (835), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 201/429 (46%), Positives = 275/429 (64%), Gaps = 44/429 (10%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++E I+ + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLHAFH
Sbjct: 813 LLELIECGETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFH 872
Query: 462 EKSYVLPDK--QYGKNKK----------EGEETG--------------EANKGKGRKKAA 495
K +++PDK + + K EG+ET + N GK +K +
Sbjct: 873 AKKFIVPDKFSSHAREAKITKRKLNQGDEGKETEPIDADDPNIEGGILDINHGKAKKGPS 932
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPE 555
YSGGLVLEPK+G YDK+I+L+DFNSLYPSIIQEYNICFTT+ +S + +LP
Sbjct: 933 YSGGLVLEPKRGLYDKYILLLDFNSLYPSIIQEYNICFTTV------ESSLDGSVPHLPS 986
Query: 556 HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGF 614
+ TG+LP +K LVE RR VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF
Sbjct: 987 SK-RTGLLPELLKNLVERRRMVKSWLKT---ASGLKAQQFDIQQQALKLTANSMYGCLGF 1042
Query: 615 PNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKI 673
NSRF+A+ LA L+T++GREIL +T LV+N LN EVIYGDTDS+MI ++D I
Sbjct: 1043 SNSRFYAKSLAELITSQGREILQSTVDLVQNLLNLEVIYGDTDSIMIYSGLDDIGKSKAI 1102
Query: 674 GNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVR 733
++ E NK Y+ LE+D+DG+YK MLLLKKKKYAA+ + +GK E KG+D+VR
Sbjct: 1103 AAKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVK-VQFKDGKPYEVIEKKGLDMVR 1161
Query: 734 RDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEIT 793
RDWS L+ E G F +SQIL + S +D +++IH + K++ + G + L IT
Sbjct: 1162 RDWSLLSKELGDFCLSQIL-----SGGSCEDVIESIHNALMKVQEQMRTGQIELEKYVIT 1216
Query: 794 KQLTKAPEG 802
K LTK PE
Sbjct: 1217 KSLTKPPEA 1225
Score = 117 bits (293), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 28/204 (13%)
Query: 214 MFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT--- 269
F LDA E++Y G +YLFGKV K ++ SCC++V+N+ R +Y +P
Sbjct: 378 FFILDAHEELYGTNAGNIYLFGKV--KAGGTYHSCCIVVKNMQRCVYAVPNGSVFCGDTI 435
Query: 270 --------KEPVSIAQVYSEFDQIAT-----------QYKILDFKSRKIEKKYAFNLPGV 310
+ +S + S+ ++A+ ++ I F +++ YAF V
Sbjct: 436 SKLSRDVEESQISPSAFLSQLHEMASGLKAECRNYLLEHNISSFSMAPVKRNYAFERSDV 495
Query: 311 PDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFP--E 367
P + L++ Y K P LPSDL G+ FS + GT +S +E L++RKIKGPSWL
Sbjct: 496 PRGENFVLKINYPFKDPPLPSDLRGENFSALLGTHSSAMELFLIKRKIKGPSWLSISKFS 555
Query: 368 AEKFPSRISWCKYEVQCNQMEKIR 391
+ P R+SWCK+EV + + I+
Sbjct: 556 SCPIPQRVSWCKFEVIVDSPKDIK 579
>gi|430811166|emb|CCJ31341.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1367
Score = 326 bits (835), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 176/324 (54%), Positives = 226/324 (69%), Gaps = 10/324 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++E+I + + +I I ++ +LPL Q+TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 686 GMMEYIIHCEVDTYFIAAIALKVQILPLTKQLTNLAGNNWARTLTGTRAERNEYILLHEF 745
Query: 461 HEKSYVLPDKQYGKNK----KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
H + Y+ PDK K+K E +E + K R K Y GGLV EP KG YDK+I++M
Sbjct: 746 HREKYICPDKTLTKSKIIDINEEDEIDDTVPLKKRDK--YKGGLVFEPIKGLYDKYILIM 803
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
DFNSLYPSIIQEYNICFTTI R D+D + E LP+ Q+ GILP I+ V R+Q
Sbjct: 804 DFNSLYPSIIQEYNICFTTID-RHECDND-EKIPE-LPDEQIPQGILPKLIETFVNRRKQ 860
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
+K LMK N SS MQ+DI+Q+ALKLTANSMYGCLG+ SRF+A+PLA L+T KGREIL
Sbjct: 861 IKNLMKDKNASSIQRMQWDIKQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREIL 920
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
NTK L E+LN +VIYGDTDS+MI+ NV ++ KIGN+ K N+ YK LE+DID VY
Sbjct: 921 RNTKELAESLNLQVIYGDTDSVMINTNVEIFEEAIKIGNEFKKHVNERYKLLEIDIDNVY 980
Query: 697 KYMLLLKKKKYAALSISKLSNGKM 720
+ MLL KKKYAAL + + +NGKM
Sbjct: 981 QRMLLHAKKKYAALHLIE-TNGKM 1003
Score = 92.0 bits (227), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 85/177 (48%), Gaps = 34/177 (19%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ +MF++D + D+ T+ LFGK + ++ + SC + +
Sbjct: 317 EDDGSLKMFWID-YTDL---NNTLCLFGKAYSRKFQKYVSCFLQIHE------------- 359
Query: 267 LKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP 326
V++ VY E ++ ++KI +FKS+ +KY F P VP +YL+V Y P
Sbjct: 360 ------VTMGDVYEEVSELFEKFKIDEFKSKPTSRKYVFEFPDVPHQCDYLKVLYPYTKP 413
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEV 382
+P + SG+TFS VFGT TS I GP WL E + F SWC+ E+
Sbjct: 414 TIPQNTSGNTFSRVFGTNTS----------IMGPCWLHIKEPQFTFGQNFSWCRLEL 460
>gi|146423101|ref|XP_001487483.1| hypothetical protein PGUG_00860 [Meyerozyma guilliermondii ATCC 6260]
Length = 1438
Score = 326 bits (835), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 252/402 (62%), Gaps = 27/402 (6%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--Y 472
Y +I + +L L+ Q+TN+ GN S TL G R+ RNEF+LLH FH Y++PDK+ +
Sbjct: 721 YTAEIAFAIQILSLSKQLTNIAGNAWSHTLSGTRAGRNEFILLHEFHRNKYIVPDKEDKF 780
Query: 473 GKNKKEGEET------GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSII 526
KN +E ++ KK Y GGLV EP+KG + +I++MDFNSLYPSII
Sbjct: 781 HKNSSYQQEAKVENNEDDSTTVTSNKKPKYQGGLVFEPEKGLHKNYILVMDFNSLYPSII 840
Query: 527 QEYNICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
QEYNICFTT+ V ++ D+ L P+ + G+LP + LV RR+VK L+
Sbjct: 841 QEYNICFTTVDRDDFNVSHDEEKDMPVL----PDRESVQGVLPRLLNTLVSRRREVKKLL 896
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K P S QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T+
Sbjct: 897 KDPKNSLVERAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQ 956
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
L E++ V+YGDTDS+MI V D+ KIG Q K N+ YK LE+DID V+K +LL
Sbjct: 957 LAESIGLRVVYGDTDSVMIDTGVTDFKEAIKIGEQFKLHVNERYKLLEIDIDNVFKRLLL 1016
Query: 702 LKKKKYAALSIS---KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
KKKYAA++ S K K++ E+KG+D+ RR++ QL+ E F++ +IL
Sbjct: 1017 HAKKKYAAMNASIDRKTGEEKVVL--EVKGLDMRRREYCQLSKEISTFILEKIL-----A 1069
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
D + L +++++++K+ + +G +P+ +I +L+K P
Sbjct: 1070 DSDPEQALMDVYDYLEKMSAKIKSGEIPVNKFQINTRLSKDP 1111
Score = 103 bits (256), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 20/214 (9%)
Query: 195 AKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNI 254
++ D + LA D + F+MF+LD E ++ LFGKV KE S V V I
Sbjct: 285 SQSDIVGLALDTTDDG-FKMFWLDYCE----VDSSLLLFGKVLTKEGKLVSGV-VQVNGI 338
Query: 255 DRKIYLLPR-----SEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLP 308
R++Y LPR T++PV+ VY E + +++ + +++K + KYAF L
Sbjct: 339 SRELYFLPREFRKVDGMEDTEQPVTTDDVYHEIAPHLLSKFGLEMIRAKKEKMKYAFELS 398
Query: 309 GVPDLSEYLEVRYSAKCP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWL 363
G+P ++YL++ K P LPSDL G+TF HVFGT S E+ +L++ I GP WL
Sbjct: 399 GIPRDTDYLKILLPFKTPKSRNLVLPSDLEGETFRHVFGTNASIFESFVLQQNIMGPCWL 458
Query: 364 EFPEAEKFPS--RISWCKYEVQCNQMEKIRSKQG 395
+ + F + S C+ EV + + + G
Sbjct: 459 DI-KGGNFEAIQNTSHCQVEVAVDAPKAVTPISG 491
>gi|346972036|gb|EGY15488.1| DNA polymerase alpha catalytic subunit [Verticillium dahliae VdLs.17]
Length = 1474
Score = 325 bits (834), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 183/430 (42%), Positives = 264/430 (61%), Gaps = 22/430 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G ++++ + +I + ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 753 GFMDYVTHIEADTYFIAALALQVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 812
Query: 461 HEKSYVLPDKQ---YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
H Y+ PDKQ GK KE EE G +KK + GGLV +P+KG YDKF+++MD
Sbjct: 813 HRNKYICPDKQGFQRGKGAKEDEE------GDSKKKDKFKGGLVFDPEKGLYDKFVLVMD 866
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQE+NICFTT+ + + + + Q GILP I LV RRQV
Sbjct: 867 FNSLYPSIIQEFNICFTTVDRTATLEDEEEVPEVPVDQEQ---GILPKLIATLVSRRRQV 923
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K+LMK + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 924 KSLMKDKTATPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILR 983
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ +VIYGDTDS+MI+ NV + FK+G + K N+ Y+ LE+DID V++
Sbjct: 984 STKELAESRALQVIYGDTDSVMINANVENVADAFKVGAEFKKAVNERYRLLEIDIDNVFR 1043
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA+++ + +NGK I E+KG+D+ RR++ L+ E ++ +IL +
Sbjct: 1044 RILLQAKKKYAAINLVE-NNGKYIEKMEVKGLDMKRREYCGLSKEISGKLLDEILSGED- 1101
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLS 813
T+ S + IH+++++I + +P I QL K P+ G + Q+ L
Sbjct: 1102 TEVS----ISRIHDYLREIAAKMREQSIPAQKYIIFTQLGKGPKEYPNGDTMPQVQVALR 1157
Query: 814 RNRRGRRRRR 823
RG+ R+
Sbjct: 1158 DIARGKNVRK 1167
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 104/194 (53%), Gaps = 14/194 (7%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
MF+ D E G++ LFGKV K+ H SC V + NI RK++ LPR ++
Sbjct: 349 LNMFWTDYTE----VSGSLCLFGKVLNKKTGQHVSCFVKIDNILRKLFFLPRETRVQGGI 404
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T + V + VY+E D + T+ KI K++ ++KYAF LP +P +YL+ Y +
Sbjct: 405 DTCDEVGMVDVYNEVDALMTKLKIGKHKTKACKRKYAFELPDIPKEGQYLKCMYPYSMAS 464
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV--- 382
+ + +G+TFSHVFGT T+ E +L + I GP WL +A+ F S S CK EV
Sbjct: 465 VDARETGETFSHVFGTNTALFEQFVLWKNIMGPCWLNIKDAD-FSSLQNASHCKLEVLVE 523
Query: 383 QCNQMEKIRSKQGL 396
N + +R + L
Sbjct: 524 HPNMVAPLRDSENL 537
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADE--NVYEEVSEKEYTERVLKR-QEDDWIDDDG 155
KT++ A +LK L+ G K + D+ +YEEV E +Y + V R EDD++ DD
Sbjct: 3 KTDRRAKLAELKALRQAGKKAFDNYQVDDINELYEEVDETQYKKIVRDRLNEDDFVVDDN 62
Query: 156 GDGYVEDGREIFD 168
G+GY +DGRE +D
Sbjct: 63 GEGYADDGREEWD 75
>gi|443924593|gb|ELU43591.1| DNA polymerase alpha catalytic subunit, putative [Rhizoctonia solani
AG-1 IA]
Length = 1321
Score = 325 bits (834), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 180/411 (43%), Positives = 256/411 (62%), Gaps = 32/411 (7%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ L + + + ++ ++PL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 636 LLHFVQHCELDAFLQMALAHKIQMVPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFH 695
Query: 462 EKSYVLPDKQYGKNKKE--------GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
YV PDK + K +E G A K+ Y GGLV EPK+G +DK+I
Sbjct: 696 RLKYVPPDKTWAKKSGAAAAKAEVVDDEGGAAPVAAKSKRDKYKGGLVFEPKRGLWDKYI 755
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
++MDFNSLYPSIIQEYNI FTT V D +P+ + G+LP I LV
Sbjct: 756 LVMDFNSLYPSIIQEYNIDFTT--VDKSDDDSGEVKIPAIPDSGIPQGVLPRLIATLVNR 813
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RRQVK LMK + L+Q+DI+QKALKLTANSMYGCLGF +SRF+A+PLAAL T KGR
Sbjct: 814 RRQVKNLMKDRTATQAQLVQWDIKQKALKLTANSMYGCLGFEHSRFYARPLAALTTFKGR 873
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL +T+ L ENL+ +VIYGDTDS+ ++ NV D KI N++K N Y+ LE+D+D
Sbjct: 874 EILTHTRELAENLSLDVIYGDTDSIFVNSNVTDLPDALKIANELKKAVNDRYRLLEIDLD 933
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
G+++ MLLL+KKKYAA+ + +++ S EIKG+D+ RR++ +++ QIL
Sbjct: 934 GIFRRMLLLQKKKYAAVKVEEMNAS----SVEIKGLDMKRREYC-------IYILDQIL- 981
Query: 754 EQSYTDYSLDDR---LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD ++ IHE+++ + ++ G V + + K+L KAPE
Sbjct: 982 -------SGDDAETVVERIHEYLRWMGENIRGGKVDMDDFIVFKRLGKAPE 1025
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSH-----SSCCVIVQNIDRKIYLLPRSEH 266
RMF+LD E +YL GKV K ++ +SCCV ++ I+R +++LPR
Sbjct: 280 LRMFWLDYLE----LDSRLYLVGKVIDKAQSTEKVTKWASCCVAIEGIERNLFVLPRKYR 335
Query: 267 LKTKEPVSIA----QVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDL-SEYLEVRY 321
++ A VY EFD++ + I + ++ + + YAF P +P+ S++++V Y
Sbjct: 336 MEFGHETDTAPTEDDVYDEFDRVRQKNGIKKWAAKFVTRSYAFGEPDIPEGESQWMKVLY 395
>gi|6018683|emb|CAB57881.1| DNA-directed DNA polymerase [Schizosaccharomyces pombe]
Length = 1405
Score = 325 bits (833), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 185/429 (43%), Positives = 264/429 (61%), Gaps = 17/429 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + + +I + ++ +L L+ +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 727 GLLDYLVHCEIDTFFIAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTRAERNEYILLHEF 786
Query: 461 HEKSYVLPDKQYGKNKKE---GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
+ Y++PDKQ + G E G + G+KK Y GGLV EP+KG Y+ I++MD
Sbjct: 787 KKNGYIVPDKQQSIRRHAEAFGAEDGLQEESLGKKKDKYKGGLVFEPQKGLYETCILVMD 846
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ R +SD P + GI P I LVE RRQ+
Sbjct: 847 FNSLYPSIIQEYNICFTTVD-RSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQI 905
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K L+K + + +Q+DI+Q+ALKLTANSMYGCLG+ SRF+A+PLA L+T KGRE L+
Sbjct: 906 KGLLKDNSATPTQRLQWDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREALM 965
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
NTK L + + +VIYGDTDS+M++ NV D + +IGN+ K + N+ Y +LE+DID VY+
Sbjct: 966 NTKELADQMGLQVIYGDTDSVMLNTNVTDKNHALRIGNEFKEKVNERYSKLEIDIDNVYQ 1025
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
MLL KKKYAAL + S GK + ++KG+D+ RR++ LA EA KF + QIL +
Sbjct: 1026 RMLLHAKKKYAALQLD--SQGKP--NLDVKGLDMKRREFCTLAKEASKFCLDQILSGE-- 1079
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLS 813
+ ++NIH ++ + NG P I +L K PE G + Q+ L
Sbjct: 1080 ---LTETVIENIHSYLMDFSEKMRNGKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVALK 1136
Query: 814 RNRRGRRRR 822
+ RG R
Sbjct: 1137 KKARGENVR 1145
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 107/195 (54%), Gaps = 11/195 (5%)
Query: 201 PLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYL 260
P E+ +F FF + ++Y G++ LFGKV+ K + SC + V I R +Y
Sbjct: 320 PSDVTEEDGSLF--FFWMDYTEMY---GSLCLFGKVYDKATKQYVSCFLKVDGIMRSLYF 374
Query: 261 LPRSEHLKTKEPVSIAQ---VYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYL 317
LPR E AQ VY E + ++ + ++KSR + KYAF L VP ++YL
Sbjct: 375 LPRPSSSSVSEDSIAAQTKDVYDEVANLLSKRGVKEWKSRVSKYKYAFELEDVPRTADYL 434
Query: 318 EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RI 375
EV YS PALP+DL+G +FSHVFGT T+ E +L R++ GP WL+ + F +
Sbjct: 435 EVIYSYSYPALPTDLTGSSFSHVFGTNTALFEQFVLSRRVMGPCWLKI-QQPNFDAVKNA 493
Query: 376 SWCKYEVQCNQMEKI 390
SWC+ E+ C+ + I
Sbjct: 494 SWCRVEIGCSSPQNI 508
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDG 155
I + +FA + L+ G+ YE +E +Y+ VSE+EY + V +R EDD++ DD
Sbjct: 8 IKPSQRFAELRALRQ-AGKTRASTYESKENEELYDNVSEEEYRKIVRQRLDEDDFVVDDN 66
Query: 156 GDGYVEDGREIFD----DDIEDVPQKKEKHDKRKKNKNI-QNPN 194
G GYV++G + +D D +D +K KRK++KN+ PN
Sbjct: 67 GAGYVDNGYDEWDQSHYSDEDDENEKGSSGRKRKRSKNVLAEPN 110
>gi|19115098|ref|NP_594186.1| DNA polymerase alpha catalytic subunit [Schizosaccharomyces pombe
972h-]
gi|118833|sp|P28040.1|DPOA_SCHPO RecName: Full=DNA polymerase alpha catalytic subunit; AltName:
Full=DNA polymerase I
gi|5009|emb|CAA41232.1| DNA polymerase catalytic subunit alpha [Schizosaccharomyces pombe]
gi|2662027|emb|CAB16598.1| DNA polymerase alpha catalytic subunit [Schizosaccharomyces pombe]
gi|227842|prf||1712310A DNA polymerase
Length = 1405
Score = 325 bits (833), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 185/429 (43%), Positives = 264/429 (61%), Gaps = 17/429 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + + +I + ++ +L L+ +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 727 GLLDYLVHCEIDTFFIAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTRAERNEYILLHEF 786
Query: 461 HEKSYVLPDKQYGKNKKE---GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
+ Y++PDKQ + G E G + G+KK Y GGLV EP+KG Y+ I++MD
Sbjct: 787 KKNGYIVPDKQQSIRRHAEAFGAEDGLQEESLGKKKDKYKGGLVFEPQKGLYETCILVMD 846
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ R +SD P + GI P I LVE RRQ+
Sbjct: 847 FNSLYPSIIQEYNICFTTVD-RSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQI 905
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K L+K + + +Q+DI+Q+ALKLTANSMYGCLG+ SRF+A+PLA L+T KGRE L+
Sbjct: 906 KGLLKDNSATPTQRLQWDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREALM 965
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
NTK L + + +VIYGDTDS+M++ NV D + +IGN+ K + N+ Y +LE+DID VY+
Sbjct: 966 NTKELADQMGLQVIYGDTDSVMLNTNVTDKNHALRIGNEFKEKVNERYSKLEIDIDNVYQ 1025
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
MLL KKKYAAL + S GK + ++KG+D+ RR++ LA EA KF + QIL +
Sbjct: 1026 RMLLHAKKKYAALQLD--SQGKP--NLDVKGLDMKRREFCTLAKEASKFCLDQILSGE-- 1079
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLS 813
+ ++NIH ++ + NG P I +L K PE G + Q+ L
Sbjct: 1080 ---LTETVIENIHSYLMDFSEKMRNGKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVALK 1136
Query: 814 RNRRGRRRR 822
+ RG R
Sbjct: 1137 KKARGENVR 1145
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 107/195 (54%), Gaps = 11/195 (5%)
Query: 201 PLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYL 260
P E+ +F FF + ++Y G++ LFGKV+ K + SC + V I R +Y
Sbjct: 320 PSDVTEEDGSLF--FFWMDYTEMY---GSLCLFGKVYDKATKQYVSCFLKVDGIMRSLYF 374
Query: 261 LPRSEHLKTKEPVSIAQ---VYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYL 317
LPR E AQ VY E + ++ + ++KSR + KYAF L VP ++YL
Sbjct: 375 LPRPSSSSVSEDSIAAQTKDVYDEVANLLSKRGVKEWKSRVSKYKYAFELEDVPRTADYL 434
Query: 318 EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RI 375
EV YS PALP+DL+G +FSHVFGT T+ E +L R++ GP WL+ + F +
Sbjct: 435 EVIYSYSYPALPTDLTGSSFSHVFGTNTALFEQFVLSRRVMGPCWLKI-QQPNFDAVKNA 493
Query: 376 SWCKYEVQCNQMEKI 390
SWC+ E+ C+ + I
Sbjct: 494 SWCRVEIGCSSPQNI 508
Score = 51.2 bits (121), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDG 155
I + +FA + L+ G+ YE +E +Y+ VSE+EY + V +R EDD++ DD
Sbjct: 8 IKPSQRFAELRALRQ-AGKTRASTYESKENEELYDNVSEEEYRKIVRQRLDEDDFVVDDN 66
Query: 156 GDGYVEDGREIFD----DDIEDVPQKKEKHDKRKKNKNI-QNPN 194
G GYV++G + +D D +D +K KRKK+KN+ PN
Sbjct: 67 GAGYVDNGYDEWDQSHYSDEDDENEKGSSGRKRKKSKNVLAEPN 110
>gi|50552854|ref|XP_503837.1| YALI0E11869p [Yarrowia lipolytica]
gi|49649706|emb|CAG79430.1| YALI0E11869p [Yarrowia lipolytica CLIB122]
Length = 1375
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 182/429 (42%), Positives = 261/429 (60%), Gaps = 37/429 (8%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ + + + I+ + +PL+ Q+TN+ GN ++TL G RS RNE +LLH F
Sbjct: 698 LLSYLMHCIQDTGLVAGIVIQTQAIPLSKQLTNLAGNAWNKTLAGTRSGRNESILLHEFT 757
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
+ Y++PDK+ G+ NK R KA + GGLVL+P KG YD+ +++MDFNSL
Sbjct: 758 RQGYIIPDKEAGRG---------TNK---RGKAKFQGGLVLDPVKGLYDRHVLVMDFNSL 805
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
YPSIIQEYNICF+T+ + D I + PE V+ GILP I+ LV+ RR+VK L+
Sbjct: 806 YPSIIQEYNICFSTVDWASIPDDQIEPPAQ--PEPSVEQGILPRLIRTLVQRRREVKRLI 863
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K P S+ Q+D++Q ALKLTANSMYGCLGF SRF+A+PLA L T+ GR+ L TK
Sbjct: 864 KDPKASAAQKKQWDVKQMALKLTANSMYGCLGFEGSRFYAKPLANLTTSIGRDTLRATKE 923
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
L E + +V+YGDTDS+MI+ N + Y K+GN K + N LYKQLE+DIDGV+ +LL
Sbjct: 924 LAEAESLQVVYGDTDSVMINTNTDTYKDAIKVGNDFKKKVNGLYKQLEIDIDGVFARLLL 983
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--DEQSYTD 759
KKKYAA ++ GK+ E+KG+D+ RR+ Q++ +A +V+ Q+L D+Q
Sbjct: 984 TNKKKYAARLATEEGMGKI----EVKGLDLRRRETCQISKDACTYVLEQVLGPDDQ---- 1035
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFV-------PLTLLEITKQLTKAPEGGKVCI---TQ 809
+ L N+HE++ ++ L +G V P+ I KQL K P+ I
Sbjct: 1036 ---ETALNNVHEYLFELAEKLRSGPVKDESAPFPVEHYAILKQLGKDPKAYNPPIQPFVA 1092
Query: 810 IRLSRNRRG 818
+ L R RG
Sbjct: 1093 VALRRLERG 1101
Score = 100 bits (249), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 229 TVYLFGKVFV---KENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQI 285
T+YLFGK V K SC + V + R++++LP++E S + V+ E D I
Sbjct: 326 TLYLFGKTMVLTGKNKGQFVSCLIKVASTQRQMFVLPKNE-------CSTSDVHEELDGI 378
Query: 286 ATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKT 345
+ + + +++ + KKY F+LPGVP +EYLEV YS SG TFSHVFG
Sbjct: 379 -MEARGIRMRAKPVTKKYCFHLPGVPAEAEYLEVLYSPPKEKFDVPSSGATFSHVFGANQ 437
Query: 346 SFLENLLLERKIKGPSWLEFPEAEKFPS----RISWCKYEVQCNQMEKI 390
S E +L ++ GP W++ E + F S RIS E+ KI
Sbjct: 438 SLFEQFVLSHQVMGPCWMQIDEPD-FASAGQGRISHTGIEITAKSSAKI 485
>gi|310798406|gb|EFQ33299.1| DNA polymerase [Glomerella graminicola M1.001]
Length = 1476
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 189/430 (43%), Positives = 270/430 (62%), Gaps = 20/430 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++ + +I + ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 755 GMMNYVTHMETDTHFITALALQVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 814
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
H Y+ PDKQ K + EE + ++G+G+KK Y GGLV EP+KG YDKF+++MDFNS
Sbjct: 815 HRNKYICPDKQTFKGRMAQEENRD-DEGEGKKKDKYKGGLVFEPEKGLYDKFVLVMDFNS 873
Query: 521 LYPSIIQEYNICFTTIP-VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
LYPSIIQEYNICFTT+ M QD D+ +P+ Q D GILP I LV R+QVK
Sbjct: 874 LYPSIIQEYNICFTTVDRSAMEQDEDVV---PEVPKDQ-DQGILPRLIATLVSRRKQVKG 929
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +T
Sbjct: 930 LMKDKSATPEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRST 989
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E+ +VIYGDTDS+MI+ NV + FK+G + K N+ Y+ LE+DID V++ +
Sbjct: 990 KDLAESNQLQVIYGDTDSVMINANVENVSDAFKVGQEFKKAVNERYRLLEIDIDNVFRRI 1049
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--DEQSY 757
LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E ++++IL DE
Sbjct: 1050 LLQAKKKYAAINLVE-KDGKFIEKMEVKGLDMKRREYCGLSKEISSKILNEILSGDET-- 1106
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA----PEGGKVCITQIRLS 813
+ + IHE++++I + +P I QL KA P + Q+ L
Sbjct: 1107 -----EKSIARIHEYLREISGKMREQAIPAQKYIIFTQLGKAPTEYPNADSMPQVQVALR 1161
Query: 814 RNRRGRRRRR 823
+G+ RR
Sbjct: 1162 EIAKGKNIRR 1171
Score = 120 bits (302), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 109/207 (52%), Gaps = 19/207 (9%)
Query: 194 NAKDDSLPLATDH--ENKKVFRMFFLDAFE----------DIYKQPGTVYLFGKVFVKEN 241
N D L + T E + V +M + DA E D + G++ LFGKV K+
Sbjct: 317 NTITDQLNVVTSSPAEARTVGKMDYKDAVEEDGSLNMFWTDYTEVNGSLCLFGKVLNKKT 376
Query: 242 NSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFDQIATQYKILDFKSR 297
+ SC + + NI RK++ LPR ++ + E V + VYSE D I T+ + +K +
Sbjct: 377 GLYVSCFIKIDNILRKLFFLPRQTKVQDGEDSGEEVELMDVYSEVDSIMTKMNVGMYKIK 436
Query: 298 KIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKI 357
+KYAF LPG+P ++YL+ Y P + +G+TFSHVFGT T+ E +L + I
Sbjct: 437 ACTRKYAFELPGIPKEAQYLKCLYPYTKPVIDGSTTGETFSHVFGTNTALFEQFVLWKNI 496
Query: 358 KGPSWLEFPEAEKFPS--RISWCKYEV 382
GP WL+ +A+ F + S CK EV
Sbjct: 497 MGPCWLKITDAD-FGALKNASHCKLEV 522
>gi|308198132|ref|XP_001386860.2| DNA-directed DNA polymerase alpha Required for mitotic DNA synthesis,
premeiotic DNA synthesis, recombination, and full
sporulation [Scheffersomyces stipitis CBS 6054]
gi|149388875|gb|EAZ62837.2| DNA-directed DNA polymerase alpha Required for mitotic DNA synthesis,
premeiotic DNA synthesis, recombination, and full
sporulation [Scheffersomyces stipitis CBS 6054]
Length = 1463
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/396 (43%), Positives = 252/396 (63%), Gaps = 23/396 (5%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--YGKNK 476
I + +L L+ Q+TN+ GN S TL G R+ RNEF+LLH F +Y++PDK+ + KN
Sbjct: 748 IAFSIQILSLSKQLTNIAGNAWSHTLSGTRAGRNEFILLHEFKRNNYIVPDKEDKFHKNA 807
Query: 477 KEGEET------GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYN 530
+E +A KK Y GGLV EP+KG + +I++MDFNSLYPSIIQE+N
Sbjct: 808 NHQQEAKMEATEDDATTVTSNKKPKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEFN 867
Query: 531 ICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
ICFTT+ V +D D+ +L PE G+LP + LV RR+VK L+K P
Sbjct: 868 ICFTTVDRDNFNVTHDEDRDMPSL----PERDSAAGVLPRLLNSLVSRRREVKKLLKDPK 923
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN 645
+ QYDIRQ+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T+ L E+
Sbjct: 924 NTPFQRAQYDIRQQALKLTANSMYGCLGYINSRFYAKPLAMLVTNKGREILMDTRQLAES 983
Query: 646 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
+ V+YGDTDS+MI V+D+ KIG Q K + N+ Y+ LE+DID V+K +LL KK
Sbjct: 984 IGLRVVYGDTDSVMIDTGVDDFQEAIKIGEQFKLQVNERYRLLEIDIDNVFKRLLLHAKK 1043
Query: 706 KYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
KYAA++ S S G++ + E+KG+D+ RR++ QL+ E FV+ +IL +D +
Sbjct: 1044 KYAAMNASINSKTGEISTTLEVKGLDMRRREYCQLSKEISAFVLMKIL-----SDLDPEK 1098
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
L +++++++++ + N + + +I +L+K P
Sbjct: 1099 ALGDVYDYLEEMSGKIKNNEIAVDKYKINTKLSKDP 1134
Score = 100 bits (248), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 197 DDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDR 256
D++L + + +++K F+MF+LD E ++ LFGK+ +E N S V + + R
Sbjct: 309 DEALIVGS-NDDKDSFKMFWLDYCE----VDSSLLLFGKILTREGNLVSGV-VKINGLCR 362
Query: 257 KIYLLPRSEHL-----KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEK-KYAFNLPGV 310
++Y LPR L ++PV+ V E + LD K EK KYAF L G+
Sbjct: 363 ELYFLPRKFRLVDDEEDVQQPVTALDVNDEVTPLLLHQFGLDGLRAKPEKMKYAFELAGI 422
Query: 311 PDLSEYLEVRYSAKCP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF 365
P +EYL++ K +PS+L G+TFSHVFGT S E +L+R I GP W+E
Sbjct: 423 PKETEYLKILLPFKTNKNKNIVMPSELEGETFSHVFGTNASIFEAFVLQRNIMGPCWIEV 482
Query: 366 PEAEKFPS--RISWCKYEVQCNQMEKIR 391
+ F S S C+ EV + I+
Sbjct: 483 SNGD-FNSIQNTSHCQVEVSIDSPSYIK 509
Score = 39.7 bits (91), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 126 DENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGREIFDD 169
D +Y+EV E+ Y E K+ DD+I DD G+GYV++G + +DD
Sbjct: 36 DVGIYDEVDEETYREHKRKQLMNDDFIVDDNGEGYVDNGVDEWDD 80
>gi|169610559|ref|XP_001798698.1| hypothetical protein SNOG_08383 [Phaeosphaeria nodorum SN15]
gi|111063539|gb|EAT84659.1| hypothetical protein SNOG_08383 [Phaeosphaeria nodorum SN15]
Length = 1462
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 181/430 (42%), Positives = 265/430 (61%), Gaps = 15/430 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++K + +I I ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 741 GLLNYVKHCQADAYFIAAISMKVQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 800
Query: 461 HEKSYVLPDKQYGKNK--KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
H+ Y+ PDKQ+GK+K E E +KK + GGLV EP+KG YDKFI++MDF
Sbjct: 801 HKNKYICPDKQWGKSKIKVEEEAAEGEEGTDAKKKDKFKGGLVFEPEKGLYDKFILVMDF 860
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQE+NICFTT+ L + D +P++Q + GILP I LV RR+VK
Sbjct: 861 NSLYPSIIQEFNICFTTVERSDLSEDDDKV--PEVPDNQ-EQGILPRLIATLVSRRREVK 917
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
LMK + ++D L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 918 KLMKAKDATTDQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREILRR 977
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK + E VIYGDTDS+MI+ NV++ K+GN+ K N Y+ LE+DID V++
Sbjct: 978 TKDMAEEKMLRVIYGDTDSVMINTNVDNIQDALKLGNEFKKIVNDSYRLLEIDIDNVFRR 1037
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ + +++ +L +
Sbjct: 1038 ILLHAKKKYAAINMVPV-DGKYIEKLEVKGLDMRRREYCALSKDTSTELLNFLLSGEDP- 1095
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLSR 814
+ ++ IH H++++ + VP I QL K P+ G + Q+ L
Sbjct: 1096 ----EVVVEKIHNHLRELSKQMREYAVPTRKYTIYTQLGKNPKEYPNGNSMPSVQVALKL 1151
Query: 815 NRRGRRRRRR 824
+G+ + +
Sbjct: 1152 QAKGKHVKAK 1161
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/185 (38%), Positives = 107/185 (57%), Gaps = 13/185 (7%)
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH-----L 267
RMF++D E G++ LFGKV + S++SC V + NI RK+Y LPR EH +
Sbjct: 343 RMFWIDYTE----INGSLCLFGKVKDRTTGSYASCFVKIDNIMRKLYFLPR-EHRHVRGV 397
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E + ++ V E D I +++++ K + +KYAF L +P ++Y+++ Y
Sbjct: 398 ATDEEIGLSDVSDELDNIMSKHRVNLHKIKPCTRKYAFELADIPKEADYMKLLYGYDKMP 457
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQCN 385
L SDL+G+TFSHVFGT TS E +L + I GP WL+ A+ F + SWCK E+Q +
Sbjct: 458 LSSDLTGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIDGAD-FGAIHNASWCKLEIQVS 516
Query: 386 QMEKI 390
+ I
Sbjct: 517 KPNSI 521
Score = 49.7 bits (117), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G YE +E +Y+EV E Y + V R +DD+I DD G+GYV
Sbjct: 5 AKLAELRALRAAGKTRLSTYEVAEEEQLYDEVDEDGYKKIVRSRLDQDDFIVDDNGEGYV 64
Query: 161 EDGREIFDD 169
+DGRE +DD
Sbjct: 65 DDGREEWDD 73
>gi|358383606|gb|EHK21270.1| hypothetical protein TRIVIDRAFT_52153 [Trichoderma virens Gv29-8]
Length = 1471
Score = 323 bits (828), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 184/403 (45%), Positives = 259/403 (64%), Gaps = 14/403 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + YI + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 745 GLMDYVTHMEADTHYIAALAVSVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 804
Query: 461 HEKSYVLPDKQYGKNK-KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
H Y+ PDKQ K + K EE E G G+KK Y GGLV EP+KG YDKF+++MDFN
Sbjct: 805 HRNKYICPDKQTFKGRQKAEEENAEEEGGDGKKKDKYKGGLVFEPEKGLYDKFVLVMDFN 864
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV--DTGILPSEIKKLVESRRQV 577
SLYPSIIQE+NICFTT+ +++ + +PE V D GILP I LV RRQV
Sbjct: 865 SLYPSIIQEFNICFTTVDRTASAENE-----DAVPEVPVNQDQGILPRLIATLVSRRRQV 919
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 920 KNLMKDKKATPEELATWDIKQLALKLTANSMYGCLGYTRSRFYARPLAILTTHKGREILR 979
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ + +VIYGDTDS+MI+ NV++ FK+GN+ K N+ Y+ LE+DID V++
Sbjct: 980 STKDLAESKSLQVIYGDTDSVMINANVDNVADAFKVGNEFKKAVNEQYRLLEIDIDNVFR 1039
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E K ++ IL
Sbjct: 1040 RILLQAKKKYAAINLIE-KDGKFIEKMEVKGLDMRRREYCALSKEVSKHLLDDILSGD-- 1096
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
++ + IHE+++ I T + + +P+ I QL K P
Sbjct: 1097 ---DIEVSVARIHEYLRDIATKMRDFAIPVPKYTIYTQLGKGP 1136
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 99/161 (61%), Gaps = 7/161 (4%)
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFD 283
G++ LFGKV K+ S+ SC V + NI RK+Y LPR + ++ T + V + VY+E D
Sbjct: 356 GSLCLFGKVLNKKTQSYVSCFVKIDNILRKLYFLPRQQRVRDGEETGDEVDMTDVYTEVD 415
Query: 284 QIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGT 343
+I T+ + +K +K E+KYAF LP +P +EY+++ Y PA+ D G+TFSHVFGT
Sbjct: 416 EIMTKMNVGMYKIKKCERKYAFELPEIPKEAEYMKLLYPYTKPAINMDAKGETFSHVFGT 475
Query: 344 KTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
T+ E +L + I GP WL+ +A+ F + S CK EV
Sbjct: 476 NTALFEQFVLWKNIMGPCWLKIQDAD-FGAIKNASHCKLEV 515
Score = 44.3 bits (103), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDD 153
+ K ++ A +LK L+ G K Y+ +++Y+EV E Y + V R +DD++ D
Sbjct: 1 MPKVDRRAKLAELKALRQAGKKAFESYQVEDADDLYDEVDEAGYKKIVRDRLNQDDFVVD 60
Query: 154 DGGDGYVEDGREIFD 168
D G+GY +DGRE +D
Sbjct: 61 DNGEGYADDGREDWD 75
>gi|453082971|gb|EMF11017.1| DNA polymerase alpha catalytic subunit [Mycosphaerella populorum
SO2202]
Length = 1468
Score = 323 bits (828), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 180/432 (41%), Positives = 265/432 (61%), Gaps = 21/432 (4%)
Query: 400 IGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHA 459
+G++ ++K + + Y + + +LPL +TN+ GN +RTL G RSERNE++LLH
Sbjct: 736 VGLMNYVKMCEIDTFYTAALAIKQQLLPLTKVLTNLAGNSWARTLSGTRSERNEYILLHE 795
Query: 460 FHEKSYVLPDKQYGK---NKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
F+ Y+ PDK YGK NK+ E +KK Y GGLV EP+KG YDKFI++M
Sbjct: 796 FYRNKYICPDKIYGKGPSNKRIEEAEEGEEGADSKKKDKYKGGLVFEPEKGLYDKFILVM 855
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT---GILPSEIKKLVES 573
DFNSLYPSIIQEYNICFTT+ SDI+ E +P+ DT GILP I+ LV
Sbjct: 856 DFNSLYPSIIQEYNICFTTV-----DRSDISEQDERVPDVPEDTSNKGILPRLIRTLVSR 910
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RR+VK LMK + + D+L +D++Q ALKLTANSMYGCLG+ SRF+A+PLAAL T+KGR
Sbjct: 911 RREVKKLMKDKSATEDMLKTWDVKQMALKLTANSMYGCLGYTKSRFYARPLAALTTSKGR 970
Query: 634 EILLNTKSLVENLN-YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
EIL +TK+L E+ + VIYGDTDS+MI+ NV++ K+G + N+ Y+ LE++I
Sbjct: 971 EILQSTKNLAESQHALRVIYGDTDSVMINTNVDNILDALKMGKDFQRSVNEQYELLEIEI 1030
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
D +++ +LL KKKYAA+ + + ++KG+D+ RR++ QL+ + +++ +L
Sbjct: 1031 DHIFRRLLLHAKKKYAAIQMIDAGDNTWKEKLDVKGLDMRRREYCQLSKDTSTQLLNYLL 1090
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK----APEGGKVCIT 808
+ + + IH+H++ + + N +P I QL K P G +
Sbjct: 1091 SGE-----EPEKVVSQIHDHLRSLSEKMRNNEIPAHKYTIYTQLGKDPKDYPNGRSMPSV 1145
Query: 809 QIRLSRNRRGRR 820
Q+ L R +G++
Sbjct: 1146 QVALKRLAKGKQ 1157
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 99/170 (58%), Gaps = 5/170 (2%)
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFD 283
G++ LFGKV ++ S+ SC V V NI RK+Y LPR K T + V A VY E D
Sbjct: 350 GSLCLFGKVKNRQTGSYVSCFVKVDNILRKLYFLPREHRHKHGRDTGDEVGFADVYEEVD 409
Query: 284 QIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGT 343
QI +++K+ K ++ +KYAF LPG+P ++YL++ Y LP D G+TFSH+FGT
Sbjct: 410 QIMSKHKVTMHKIKQCTRKYAFELPGIPKEADYLKLLYPYDKSPLPMDYQGETFSHIFGT 469
Query: 344 KTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQMEKIRS 392
T+ E ++ + I GP WL+ A+ S SWCK E+Q + I +
Sbjct: 470 NTALFEQFVMWKNIMGPCWLKIEGADFNAVSNASWCKLELQVTKPNGITT 519
Score = 42.0 bits (97), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 114 GQGVKHKYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGGDGYVEDGRE------- 165
G+ YE E++YE V ++ Y + V R + DD++ DD G+GY +DGRE
Sbjct: 19 GRTAFDDYEVEEAESIYETVDDEGYKKVVRDRLDRDDFVVDDNGEGYADDGREDWQNERQ 78
Query: 166 -IFDDDIEDVPQKKEKHDKRKK 186
++D + E+ K K KRK+
Sbjct: 79 PMYDSESEEDLPKNSKAAKRKR 100
>gi|393221988|gb|EJD07472.1| hypothetical protein FOMMEDRAFT_137775 [Fomitiporia mediterranea
MF3/22]
Length = 1441
Score = 323 bits (828), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 188/480 (39%), Positives = 273/480 (56%), Gaps = 39/480 (8%)
Query: 342 GTKTSFLEN-LLLERKIKGPSWLEFPEAEKFPSRISW-----CKYEVQCNQMEKIRSKQG 395
GT FL LL + G A+ S +W C ++C + E I +
Sbjct: 671 GTNIKFLNGRLLCDLASDG--------AKGMISSTTWSMTEMCATHLKCER-EDIDPDEV 721
Query: 396 LIYLIG-------IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGR 448
Y G ++ F++ L + Y + I + +LPL Q+TN+ GN ++TL GGR
Sbjct: 722 ADYFDGNLSTPDKLIRFVQHCELDAHYQMAIAARVQILPLTKQLTNLAGNSWNKTLNGGR 781
Query: 449 SERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKG-------RKKAAYSGGLV 501
+ERNE++LLH FH Y+ PDK +GK +G G K+ Y GGLV
Sbjct: 782 AERNEYILLHEFHRLKYICPDKTFGKKVAAAAAVKAEAEGDGVVPVTQKSKRDKYKGGLV 841
Query: 502 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTG 561
EPK+G +DK+I++MDFNSLYPSIIQEYNI FTT+ ++ + + + P V G
Sbjct: 842 FEPKRGLWDKYILVMDFNSLYPSIIQEYNIDFTTVERADSEEGEEEKIPDP-PSSDVPQG 900
Query: 562 ILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFA 621
+LP I LV RR+VK LMK + ++QYDI+Q+ALKLTANSMYGCLGF SRF+A
Sbjct: 901 VLPRLIATLVARRREVKKLMKDRSTPHAKMLQYDIKQQALKLTANSMYGCLGFEYSRFYA 960
Query: 622 QPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC 681
+PLAAL T KGREIL T+ L EN +VIYGDTDS+ ++ NV + +I + K
Sbjct: 961 RPLAALTTYKGREILARTRELAENQGLDVIYGDTDSIFVNSNVTELPQALRISDTFKKLV 1020
Query: 682 NKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLAS 741
N+ Y +LE+D+DG+++ +LLL+KKKYAAL + S E+KG+D+ RR++ QL+
Sbjct: 1021 NEQYVKLEIDLDGIFQRLLLLQKKKYAALKVEDAER----TSVEVKGLDMKRREYCQLSK 1076
Query: 742 EAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ ++ +L + + + ++ IHEH+ K+ ++ + L I K+L K PE
Sbjct: 1077 DTSHHILEMVLSGE-----ATETVVEQIHEHLSKLGEEVRGDKINLDKFIINKRLGKNPE 1131
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 104/190 (54%), Gaps = 11/190 (5%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ R F++D E Q G V+ GK+ K+ SCC+ V+N++R +++L R +
Sbjct: 330 EDDGSLRFFWIDYLE----QDGNVHFIGKLKDKKTKLWVSCCLTVENLERNLFVLSRPKK 385
Query: 267 LKTKEPVSIA----QVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSE--YLEVR 320
L+ I V +FD + + I FKS+ +++KYAF P VP L+E +++V+
Sbjct: 386 LEDGHETDIVPDNLDVAKDFDALRKKAGINKFKSKFVKRKYAFGEPDVP-LNEHSWMKVK 444
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
Y P L +L DT + +FGT+TS E L+L+RKI GP WL+ E ISWCK+
Sbjct: 445 YPFSEPQLSENLQTDTIARIFGTRTSAFELLVLKRKIMGPCWLQIKEPHVEHKGISWCKF 504
Query: 381 EVQCNQMEKI 390
E + + I
Sbjct: 505 EATVSNPKDI 514
Score = 41.6 bits (96), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGD 157
K +K AA+++ ++ G+ K + D VY+EV E++Y V R Q DD+I DDG D
Sbjct: 9 KPDKLAAYKRAREGGGRDWKPE----EDVEVYDEVDEEQYKSIVKGRLQRDDFIVDDGVD 64
Query: 158 GYVEDGREIFDDD 170
GY ++G + + +D
Sbjct: 65 GYADNGMDDWGED 77
>gi|378733560|gb|EHY60019.1| DNA polymerase alpha subunit A [Exophiala dermatitidis NIH/UT8656]
Length = 1455
Score = 323 bits (827), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 177/428 (41%), Positives = 264/428 (61%), Gaps = 13/428 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++ + +I ++ +L +LPL +T + GN +RTL G R+ERNE++LLH F
Sbjct: 738 GLINYVNHCHADTFFIAALVLKLQMLPLTKVLTELAGNSWARTLSGTRAERNEYILLHEF 797
Query: 461 HEKSYVLPDKQYGKN--KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
H Y+ PDK+YGK K E +KK Y GGLV EP+KG YDKFI++MDF
Sbjct: 798 HRNKYICPDKEYGKGRAKHNEENEDGEEGADTKKKDKYKGGLVFEPEKGLYDKFILVMDF 857
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNICFTT+ +++ +P+ Q GILP I LV+ RR+VK
Sbjct: 858 NSLYPSIIQEYNICFTTVDRSTTSENENEEKVPEVPDEQTQ-GILPKLISTLVKRRREVK 916
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
LMK +++ L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA LVT KGREIL +
Sbjct: 917 KLMKDKRATAEDLALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLVTFKGREILRS 976
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK L E+ +VIYGDTDS+MI+ N ++ +G K N+ YK LE+DID +++
Sbjct: 977 TKELAESNQLQVIYGDTDSVMINTNADNIAQALSVGVDFKRSVNERYKLLEIDIDNIFRR 1036
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ EA + ++++IL +
Sbjct: 1037 LLLHAKKKYAAINMAEV-DGKYVEKLEVKGLDMKRREYCALSKEASQRLLNEILSGE--- 1092
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLSR 814
+ L+ IHE+++++ + +P+ I +L K P+ + Q+ L
Sbjct: 1093 --DPEVVLEKIHEYLRELAGKMRENAIPVQKYVIYTKLGKNPKEYPNADSMPQVQVALRE 1150
Query: 815 NRRGRRRR 822
RG+ R
Sbjct: 1151 IARGKTVR 1158
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 100/184 (54%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS-EHL--- 267
R F+LD E G++ LFGKV K + S V V N+ RK++ LPR H
Sbjct: 337 LRFFWLDYTE----VNGSLCLFGKVKHKSTGRYLSAFVKVDNVLRKLFFLPRKYRHCNGR 392
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
+T+E V +A VY+E D + ++ K+ K + +KYAF LP VP +EYL++ Y A
Sbjct: 393 ETQEEVEMADVYNEVDALMSRMKVTTRKVKPCTRKYAFELPDVPKEAEYLKLLYPYDNAA 452
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP DL G+TFS VFGT T+ E +L + I GP WL +A+ + SWCK E +
Sbjct: 453 LPMDLQGETFSRVFGTNTALFEQFVLWKNIMGPCWLNIEDADFTAVNNASWCKLECAVTR 512
Query: 387 MEKI 390
I
Sbjct: 513 PANI 516
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 104 AAFQKLKD--LKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
AA +L+ L G+ Y+ +Y+EV E Y + V R +DD++ DD G+GY
Sbjct: 5 AAIAQLRAQRLAGKTRLETYQIEDQGAIYDEVDEDGYKKVVRSRLDQDDFVVDDNGEGYA 64
Query: 161 EDGREIF--------DDDIEDVPQK 177
+DGRE + DD EDVP K
Sbjct: 65 DDGREEWQNERQYYSSDDAEDVPLK 89
>gi|429863473|gb|ELA37924.1| DNA polymerase alpha catalytic [Colletotrichum gloeosporioides Nara
gc5]
Length = 1471
Score = 323 bits (827), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 188/429 (43%), Positives = 272/429 (63%), Gaps = 18/429 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ +I + +I + ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 754 GMMNYITHMETDTHFITALALQVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 813
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
H Y+ PDKQ + + E+ E +G+G+KK Y GGLV EP+KG YDKF+++MDFNS
Sbjct: 814 HRNKYICPDKQTFRGRMAQEDNQE-EEGEGKKKDKYKGGLVFEPEKGLYDKFVLVMDFNS 872
Query: 521 LYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
LYPSIIQE+NICFTT+ R + D + E +P+ Q D GILP I LV RRQVKAL
Sbjct: 873 LYPSIIQEFNICFTTVN-RSAMNEDEDAVPE-VPKDQ-DQGILPRLIATLVSRRRQVKAL 929
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK + +++ L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +TK
Sbjct: 930 MKDKSATTEQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRSTK 989
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
L E+ +VIYGDTDS+MI+ NV + FK+G + K N+ Y+ LE+DID V++ +L
Sbjct: 990 ELAESKALQVIYGDTDSVMINANVENVADAFKVGQEFKKAVNERYRLLEIDIDNVFRRIL 1049
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--DEQSYT 758
L KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E ++++IL DE +
Sbjct: 1050 LQAKKKYAAINLVE-KDGKFIEKMEVKGLDMKRREYCTLSKEISSKILNEILSGDETEVS 1108
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVP----LTLLEITKQLTKAPEGGKVCITQIRLSR 814
+ IHE++++I + VP + ++ K T+ P + Q+ L
Sbjct: 1109 -------ISRIHEYLREISGMMREQSVPPQKYIIFTQLGKTPTEYPNADSMPQVQVALRE 1161
Query: 815 NRRGRRRRR 823
RG+ RR
Sbjct: 1162 IARGKTVRR 1170
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 7/161 (4%)
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFD 283
G++ LFGKV K+ + SC V V NI RK+Y LPR ++ T E V + VYSE D
Sbjct: 363 GSLCLFGKVLNKKTGLYVSCFVKVDNILRKLYFLPRETRVQGSEDTGEEVGMMDVYSEID 422
Query: 284 QIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGT 343
+ T+ + +K + ++KYAF LPG+P ++YL+ Y P + +G+TFS VFGT
Sbjct: 423 AMMTKMNVGMYKIKACKRKYAFELPGIPKEAQYLKCLYPYTKPVIDGSATGETFSRVFGT 482
Query: 344 KTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
T+ E +L + I GP WL+ +A+ F + S CK EV
Sbjct: 483 NTALFEQFVLWKNIMGPCWLKINDAD-FGALKNASHCKLEV 522
Score = 47.8 bits (112), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDG 155
+ K ++ + +L+ L+ G K YE +YEEV E +Y + + R +DD++ DD
Sbjct: 1 MPKADRRSKLAELRALRQSGKKGNYEVEDVSELYEEVDENQYKKIIRDRLDQDDFVVDDN 60
Query: 156 GDGYVEDGREIFD 168
G+GY +DGRE +D
Sbjct: 61 GEGYADDGREEWD 73
>gi|402079097|gb|EJT74362.1| DNA polymerase alpha catalytic subunit [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1527
Score = 322 bits (825), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 260/406 (64%), Gaps = 15/406 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+V+++ + + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 785 GLVDYLAHMEADTYLMAALALRTQILPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 844
Query: 461 HEKSYVLPDKQYGKNKK----EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
H YV PDK + ++ + E+ EA G G+KK Y GGLV EP+KG YDKF+++M
Sbjct: 845 HRSKYVCPDKPVFRGREARVVKEEDEDEAKAGGGKKKDKYKGGLVFEPEKGLYDKFVLVM 904
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
DFNSLYPSIIQE+NICFTT+ L D + E +P +++ GILP I LV RRQ
Sbjct: 905 DFNSLYPSIIQEFNICFTTVDRSSLTAKDEDEVPE-VPSAKLEQGILPRLIATLVSRRRQ 963
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VKALMK +++ L +D++Q+ALKLTANSMYGCLGF SRF+A+PLA L T KGREIL
Sbjct: 964 VKALMKDKTATAEELATWDVKQQALKLTANSMYGCLGFDKSRFYARPLAVLTTYKGREIL 1023
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
+TK L E+ +VIYGDTDS+MI+ NV+ Y + ++G K N+ Y+ LE+DID V+
Sbjct: 1024 RSTKELAESNALQVIYGDTDSVMINANVDSYAAARRVGIDFKRAVNERYRLLEIDIDNVF 1083
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--DE 754
+ +LL KKKYAA+++ ++ +G+++ E+KG+D+ RR++ L+ E ++S+IL DE
Sbjct: 1084 RRILLQAKKKYAAVNLIEV-DGRLVEKMEVKGLDMRRREYCALSKEVSAHILSEILSGDE 1142
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+ + IHE+++ + + VP + QL KAP
Sbjct: 1143 TEAS-------VARIHEYLRDMAARMRAATVPPQKYVVYTQLGKAP 1181
Score = 117 bits (293), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 98/187 (52%), Gaps = 10/187 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT-- 269
RMF+LD E + G++ LFGKV K+ ++SC V V NI RK+Y LPR ++
Sbjct: 377 LRMFWLDYAEVM----GSLCLFGKVLNKKTKLYTSCFVKVDNILRKLYFLPRQFRVRQGE 432
Query: 270 ---KEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP 326
E V + VY E D + T+ + K + +KYAF LP VP +YL+ Y
Sbjct: 433 EHEDESVGMQDVYGEVDGLMTKMGVDMHKIKACSRKYAFELPDVPREGQYLKCLYPYTKR 492
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSR-ISWCKYEVQCN 385
AL D +G+T+SHVFGT TS E +L + I GP WL+ +A R S C+ EV
Sbjct: 493 ALDGDQAGETYSHVFGTNTSLFEQFVLWKNIMGPCWLKIEDANFSAVRNASHCRLEVLAE 552
Query: 386 QMEKIRS 392
I +
Sbjct: 553 HPAMIST 559
Score = 47.4 bits (111), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGD 157
K KFA + L+ G+ YE +++YEEV E Y + V +R +DD++ DD G+
Sbjct: 9 KRTKFAELRALRQ-SGKKTFDAYEVEKVDSLYEEVDEDSYKKLVRERLNQDDFVVDDNGE 67
Query: 158 GYVEDGREIFD 168
GY +DGRE +D
Sbjct: 68 GYADDGREDWD 78
>gi|345566186|gb|EGX49131.1| hypothetical protein AOL_s00079g3 [Arthrobotrys oligospora ATCC
24927]
Length = 1402
Score = 322 bits (825), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 185/428 (43%), Positives = 270/428 (63%), Gaps = 24/428 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G ++++ + I + + ++PLA Q+TN+ GN L+RTL G R+ERNE++LLH F
Sbjct: 736 GFLDYLGHAKTDTYMIAAVALRIQMIPLAKQLTNLAGNSLARTLSGTRAERNEYILLHEF 795
Query: 461 HEKSYVLPDKQYGKNKKE------GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
+ Y+ PDK Y K + G + E + G+KK + GGLVLEP++G YDKF++
Sbjct: 796 TKNKYICPDKSYDKRNSQKATDDDGADEEEDTRPDGKKKDKFKGGLVLEPERGLYDKFVL 855
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESR 574
+MDFNSLYPSIIQE+NICFTT+ L + + + P Q GILP I LV+ R
Sbjct: 856 VMDFNSLYPSIIQEFNICFTTVERSDLPEDQVPEI----PSEQAQ-GILPKLISTLVQRR 910
Query: 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
RQVK LMK + L Q+DI+Q+ALKLTANSMYGCLG+ SRF+A+PLA L T +GRE
Sbjct: 911 RQVKGLMKDKRATPAQLSQWDIKQQALKLTANSMYGCLGYVRSRFYARPLAMLTTFQGRE 970
Query: 635 ILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDG 694
IL +TK L E+ VIYGDTDS+MI+ NV+ Y KIGN K N Y+ LE+DID
Sbjct: 971 ILRSTKELAESSQLRVIYGDTDSVMINTNVDIYADAIKIGNDFKKAVNDRYRLLEIDIDN 1030
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
V++ +LL KKKYAAL+ S ++GK + E+KG+D+ RR++ Q++ + +++ +IL
Sbjct: 1031 VFQRLLLHSKKKYAALNFS--ADGKPVV--EVKGLDMKRREYCQVSKDVSGWILKKILSG 1086
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE---GGKVCITQIR 811
+ D ++ IHE+++ I ++ +P + I +L+K PE GGK + Q++
Sbjct: 1087 EDP-----DAVIEEIHEYLRGIAQNMRENNIPFSRYTIYTKLSKDPEQYPGGKT-MPQVQ 1140
Query: 812 LSRNRRGR 819
++ RR +
Sbjct: 1141 VALRRRSK 1148
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 91/184 (49%), Gaps = 26/184 (14%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
R F++D E G + LFGKVFVK + H+S V + I RK++ LPR T E
Sbjct: 356 LRFFWMDYTE----IGGCLCLFGKVFVKGTDKHASAFVKINGIMRKLFFLPRVTKRSTGE 411
Query: 272 PVSIAQVYSEFDQIATQYKI---LDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPAL 328
V ++ VYSE D++ T+ KI D+K++ + + PG P +
Sbjct: 412 EVEMSDVYSEVDELLTRLKISQGSDWKAKPCSRNNPIHSPG----------------PQV 455
Query: 329 PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQCNQ 386
P +G++FSHVFGT TS E +L R I GP WL E F SWCK E+Q +
Sbjct: 456 PPGTNGESFSHVFGTGTSIFEQFVLARNIMGPCWLHI-EDPIFTGIENASWCKVELQVSS 514
Query: 387 MEKI 390
I
Sbjct: 515 PNLI 518
>gi|294934334|ref|XP_002781065.1| DNA polymerase delta catalytic subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239891298|gb|EER12860.1| DNA polymerase delta catalytic subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 948
Score = 322 bits (825), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 199/464 (42%), Positives = 275/464 (59%), Gaps = 49/464 (10%)
Query: 380 YEVQCNQMEKIRSKQGLIYLIGIVEF----------IKFTMLHSSYIIKIMCELNVLPLA 429
Y++ M+ +++ + + L +V+F + T+ + +++ L VL L
Sbjct: 179 YDLGSLSMKLLKTARAPVSLDSLVKFYEDPRALSALAEHTLTDAVLQLRVGWALQVLSLT 238
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK--------EGEE 481
Q+TN+ GN+ S +L R+ERNE LL+H FH K +++PDK+ ++K E +
Sbjct: 239 RQLTNLAGNLWSHSLQNKRAERNEILLVHEFHRKKFIVPDKERPGDRKSHQVDVFDENGD 298
Query: 482 TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML 541
T A G RKKAAY+GGLVLEPK G YDK ++L+DFNSLYPSII+EYNICFTT+
Sbjct: 299 TKAATAGPRRKKAAYAGGLVLEPKAGLYDKLVLLLDFNSLYPSIIREYNICFTTVERLDA 358
Query: 542 QDSDITTLCEYLPEHQ-----VDTGILPSEIKKLVESRRQVKALMK---QPNLSSDLLMQ 593
DS + +PE ILP I +LVESR+ VK L+K P + Q
Sbjct: 359 HDSALEENAGAIPELPKRAPGEGDAILPQVITRLVESRKDVKKLLKTCSNPKTGN----Q 414
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIY 652
DIRQKALKLTANSMYGCLGF NSRF+A+P+AAL+T GRE L T +VEN L +V+Y
Sbjct: 415 LDIRQKALKLTANSMYGCLGFSNSRFYAKPIAALITRTGRETLQATVDIVENQLRLDVVY 474
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSI 712
GDTDS+ + +D +IG QI +E NK YK+LELD+DGV+K +LLLKKKKYA + +
Sbjct: 475 GDTDSIFVHTGTEAFDQAMRIGAQIMAEINKRYKKLELDVDGVFKRLLLLKKKKYAGVKV 534
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD--EQSYTDYSLDDRLQNI- 769
+ G I +E KG+D+VRRDW L+ + G V+ +L +S T S D+ L ++
Sbjct: 535 IDWAQG--IAEKEYKGLDLVRRDWCPLSKKMGDEVLRCLLGLRAESPTPASSDNGLADVD 592
Query: 770 -------------HEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
H+++K I +DN +PL ITK LTK P
Sbjct: 593 RSAQEAEHVVEWLHDYVKSISLKMDNDEIPLEDYVITKALTKMP 636
>gi|449296808|gb|EMC92827.1| hypothetical protein BAUCODRAFT_96163 [Baudoinia compniacensis UAMH
10762]
Length = 1474
Score = 322 bits (825), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 181/438 (41%), Positives = 274/438 (62%), Gaps = 25/438 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++K L + +I I + +LPL+ +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 743 GLMNYVKMCELDTYFIAAIALKRQLLPLSKVLTNLAGNSWARTLSGTRAERNEYILLHEF 802
Query: 461 HEKSYVLPDKQYGK---NKK---EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFII 514
+ ++ PDK YGK NKK + EA+ +KK + GGLV EP+KG YDKFI+
Sbjct: 803 YRNKFICPDKVYGKGAANKKLEDTADNGDEADAADTKKKDKFKGGLVFEPEKGLYDKFIL 862
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT---GILPSEIKKLV 571
+MDFNSLYPSIIQE+NICFTT+ SDI + +PE DT GILP I+ LV
Sbjct: 863 VMDFNSLYPSIIQEFNICFTTV-----DRSDIGADEDKVPEVPEDTANKGILPRLIRTLV 917
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
RR+VK LMK ++S + +D++Q+ALKLTANSMYGCLG+ SRF+A+PLAAL T+K
Sbjct: 918 SRRREVKKLMKDKSISEEQRQTWDVKQQALKLTANSMYGCLGYTKSRFYARPLAALTTSK 977
Query: 632 GREILLNTKSLVENLN-YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
GREIL +TK L E+ + VIYGDTDS+M++ N ++ K+GN+ K N+ Y+ LE+
Sbjct: 978 GREILQSTKELAESAHALRVIYGDTDSVMVNTNKDNILEAIKMGNEFKKAVNERYELLEI 1037
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
+ID +++ +LL KKKYAA+++ + NG E+KG+D+ RR++ QL+ + +++
Sbjct: 1038 EIDNIFRRLLLHAKKKYAAINMVE-DNGVWREKMEVKGLDMRRREYCQLSKDTSTELLNY 1096
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVC 806
+L + + + +IH+H++ + + + +P I QL KAP+ +
Sbjct: 1097 LLSGE-----EPEKVVSHIHDHLRSLGEKMRSNAIPAYKYTIYTQLGKAPKEYPNANSMP 1151
Query: 807 ITQIRLSRNRRGRRRRRR 824
Q+ L +G++ R +
Sbjct: 1152 SVQVALKLMAKGKQVRAK 1169
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/192 (38%), Positives = 109/192 (56%), Gaps = 11/192 (5%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ R F+ D E G++ LFGKV + ++ SC V V NI RK+Y LPR EH
Sbjct: 339 EDDGTLRFFWTDYTE----VNGSLCLFGKVKNRTKGTYVSCFVKVDNILRKLYFLPR-EH 393
Query: 267 LK-----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRY 321
+ T + V ++ VY E D + T++K+ K + +KYAF LP +P ++YL++ Y
Sbjct: 394 RQRHGRDTSDEVEMSDVYEEVDGLMTKFKVNMHKIKPCSRKYAFELPDIPREADYLKLLY 453
Query: 322 SAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKY 380
PALP ++G+TFSHVFGT T+ E +L + I GP WL+ A+ + + SWCK
Sbjct: 454 PYDKPALPMGMTGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEGADFQAVNNASWCKL 513
Query: 381 EVQCNQMEKIRS 392
E+Q + I +
Sbjct: 514 ELQVTKPNGITT 525
Score = 49.7 bits (117), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 11/81 (13%)
Query: 121 YEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGRE-------IFDDD-- 170
YE +++YE V +++Y + V KR EDD++ DD G GY +DGRE +++DD
Sbjct: 26 YEVQEADSIYETVDDEQYKQVVRKRLDEDDFVVDDNGAGYADDGREDWQDQRVVYEDDES 85
Query: 171 IEDVPQKKEKHDKRKKNKNIQ 191
ED+P K+ K KRK+ +++
Sbjct: 86 EEDLP-KQSKAAKRKREDDVE 105
>gi|344228706|gb|EGV60592.1| hypothetical protein CANTEDRAFT_96043 [Candida tenuis ATCC 10573]
Length = 1440
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/396 (42%), Positives = 250/396 (63%), Gaps = 23/396 (5%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--YGKNK 476
I + +L L+ Q+TN+ GN S+TL G R+ RNE++LLH FH+ ++ PDK+ Y KN
Sbjct: 724 IAFSIQILSLSKQLTNLAGNAWSQTLYGTRAGRNEYILLHEFHKNKFICPDKEDKYHKNT 783
Query: 477 KEGEET------GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYN 530
++ +A KK + GGLV EP+KG + I++MDFNSLYPSIIQE+N
Sbjct: 784 SYAQQARLESTEDDATNVTSNKKPKFQGGLVFEPEKGLHKNCILVMDFNSLYPSIIQEFN 843
Query: 531 ICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
ICFTT+ + +D D+ +L PE+ + G+LP + LV RR+VK L+K P
Sbjct: 844 ICFTTVERERYNITHDEDKDLPSL----PENDLQPGVLPKLLNTLVSRRREVKKLLKDPK 899
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN 645
+ QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T+ L E+
Sbjct: 900 NTPVERAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAES 959
Query: 646 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
+ V+YGDTDS+MI V + K GN+ K++ N+ YK LE+DID YK +LL KK
Sbjct: 960 IGLRVVYGDTDSVMIDTGVTELKEAIKTGNEFKAKVNERYKILEIDIDNTYKAILLHAKK 1019
Query: 706 KYAALSIS-KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
KYAA+ IS GK + E+KG+D+ RR++ QL+ + F+++++L D +
Sbjct: 1020 KYAAMDISFDKRTGKEVTKLEVKGLDMRRREYCQLSKDISTFILNKVL-----LDADSEK 1074
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
L I+E+++++ + N +P+ +I +L+K P
Sbjct: 1075 ALSEIYEYLEQMANRIKNNEIPMDKFKINTKLSKDP 1110
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 103/197 (52%), Gaps = 17/197 (8%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR--- 263
+NK F+MF++D E ++ LFGKV + + S V + + R+++ LPR
Sbjct: 293 DNKDSFKMFWMDHCE----VDNSLILFGKVQTR-SGQFVSGAVQINGLTRELFFLPRKYR 347
Query: 264 --SEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVR 320
T++ VS V+ E + +YK+ +++ + KYAF L GVP S+YL+V
Sbjct: 348 KVGGEDDTEDEVSPQDVHEEIIPLLLDKYKLDTIRAKPEKMKYAFELTGVPKESDYLKVL 407
Query: 321 YSAKCP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRI 375
K P +P+DL G+TFSHVFGT ++ E +++R I GP WLE + + R
Sbjct: 408 LPFKTPKNKHLIMPADLEGETFSHVFGTNSNIFEAFVVQRNIMGPCWLEISKGDFNSIRN 467
Query: 376 S-WCKYEVQCNQMEKIR 391
S C+ EV + I+
Sbjct: 468 STHCQVEVSVDSPNYIK 484
>gi|241953235|ref|XP_002419339.1| DNA polymeras I subunit A, putative; DNA polymerase alpha catalytic
subunit A, putative; catalytic subunit of the DNA
polymerase I alpha-primase complex, putative [Candida
dubliniensis CD36]
gi|223642679|emb|CAX42933.1| DNA polymeras I subunit A, putative [Candida dubliniensis CD36]
Length = 1531
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/393 (43%), Positives = 252/393 (64%), Gaps = 25/393 (6%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--------YGKNK 476
+L L+ Q+TN+ GN S TL G R+ RNE++LLH F +Y++PDK+ Y +
Sbjct: 818 ILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFKRNNYIVPDKEDKTHKNTSYQQEA 877
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ +A KK Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 878 RVENAEEDATTATSNKKPKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTV 937
Query: 537 P-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL 591
V ++ D+ L PE ++G+LP + LV RR+VK L+K P +
Sbjct: 938 NRDRFNVTHDENKDMPVL----PERDTESGVLPRLLNTLVSRRREVKKLLKDPKNTPFQK 993
Query: 592 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVI 651
QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T+ L E+ + V+
Sbjct: 994 AQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAESSSLRVV 1053
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAAL- 710
YGDTDS+MI N Y KIG Q K++ N+ Y+ LE+DID V+K +LL KKKYAA+
Sbjct: 1054 YGDTDSVMIDTGANSYKEAIKIGEQFKAQVNERYRLLEIDIDNVFKRLLLHAKKKYAAMN 1113
Query: 711 -SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
SI+K +N + + E+KG+D+ RR++ QL+ + FV+++IL +D + L +
Sbjct: 1114 ASINKATNEET-ATLEVKGLDMRRREYCQLSKDISTFVLTKIL-----SDSDPETALLEV 1167
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
++++ +++T + N +P+ +I +L+K P+
Sbjct: 1168 YDYLDEMKTKVQNNEIPIDKYKINTKLSKDPKS 1200
Score = 86.7 bits (213), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 96/193 (49%), Gaps = 18/193 (9%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR------SE 265
F+MF+ D E ++ LFGK+ KE S V V I R+++ LPR E
Sbjct: 387 FKMFWFDYAE----VENSLLLFGKIMTKEGKLVSGV-VKVDGICRELFFLPREYRIVDDE 441
Query: 266 HLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
KTK+ +I + + YK+ + +++ KKYAF L +P +EYL+V
Sbjct: 442 EDKTKKLAAIDVLEEIQPLLLANYKLEELRAKPEVKKYAFELADIPKEAEYLKVLLPFNN 501
Query: 326 PA----LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCK 379
+P+++ G TF HVFGT + E+ +++R I GP WLE F + +S C+
Sbjct: 502 ETNRNIMPANIEGSTFRHVFGTNANMFESFVMQRNIMGPCWLEI-RGGDFDAMQNVSHCQ 560
Query: 380 YEVQCNQMEKIRS 392
EV N+ +I +
Sbjct: 561 VEVVVNRPSQIST 573
>gi|189205368|ref|XP_001939019.1| DNA polymerase alpha catalytic subunit A [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187986118|gb|EDU51606.1| DNA polymerase alpha catalytic subunit A [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1472
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 185/427 (43%), Positives = 265/427 (62%), Gaps = 19/427 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++K + +I I ++ +LPL +TN+ GN RTL G R+ERNE++LLH F
Sbjct: 747 GLLNYVKHCQADAYFIAAISIKVQMLPLTKVLTNLAGNSWGRTLSGTRAERNEYILLHEF 806
Query: 461 HEKSYVLPDKQYGKNKKE--GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
H+ Y+ PDKQ+GK+K + E +KK + GGLV EP+KG YDKFI++MDF
Sbjct: 807 HKNKYICPDKQWGKSKAKVDEEAAEGEEGADAKKKDKFKGGLVFEPEKGLYDKFILVMDF 866
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLVESRRQ 576
NSLYPSIIQE+NICFTT+ + SD++ + +PE D GILP I LV RR+
Sbjct: 867 NSLYPSIIQEFNICFTTV-----ERSDLSEDDDKVPEVPTDQQQGILPRLIATLVSRRRE 921
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMK + +SD L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 922 VKKLMKAKDATSDQLATWDIKQMALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREIL 981
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
TK + E VIYGDTDS+MI+ NV++ K+GN+ K E N YK LE+DID V+
Sbjct: 982 RKTKDMAEVKALRVIYGDTDSVMINTNVDNIQDALKLGNEFKREVNDSYKLLEIDIDNVF 1041
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
+ +LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E +++ +L +
Sbjct: 1042 RRILLHAKKKYAAINMVPV-DGKYIEKLEVKGLDMRRREYCALSKETSTELLNFLLSGED 1100
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRL 812
+ ++ IH H++++ + +P I QL K P+ GG + Q+ L
Sbjct: 1101 P-----EVVVEKIHNHLRELSKQMREYAIPARKYTIYTQLGKNPKEYPNGGSMPAVQVAL 1155
Query: 813 SRNRRGR 819
+G+
Sbjct: 1156 RLQSKGK 1162
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 104/185 (56%), Gaps = 11/185 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS-EHLK-- 268
R F++D E G++ LFGKV + ++SSC V V NI RK+Y LPR H++
Sbjct: 348 LRFFWIDYTE----INGSLCLFGKVKNNKTGNYSSCFVKVDNILRKLYFLPREYRHVRGV 403
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V ++ V E D I +++++ K + +KYAF LP +P ++YL++ Y
Sbjct: 404 ATDEEVGLSDVSDEVDSIMSKHRVNLHKIKPCTRKYAFELPDIPKEADYLKLLYGYDKMP 463
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF--PEAEKFPSRISWCKYEVQCN 385
L SDL G+TFSHVFGT TS E +L + I GP WL+ P+ S SWCK EV +
Sbjct: 464 LSSDLKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIDNPDFGSL-SNASWCKLEVLVS 522
Query: 386 QMEKI 390
+ I
Sbjct: 523 KPNNI 527
Score = 45.4 bits (106), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 121 YEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGREIFDDD 170
YE +E +Y+ V E+ Y + V R EDD++ D G+GYV+DGRE +DDD
Sbjct: 30 YEVAEEEQLYDTVDEEGYKKIVRGRLDEDDFVVGDEGEGYVDDGREEWDDD 80
>gi|448089833|ref|XP_004196912.1| Piso0_004142 [Millerozyma farinosa CBS 7064]
gi|448094173|ref|XP_004197943.1| Piso0_004142 [Millerozyma farinosa CBS 7064]
gi|359378334|emb|CCE84593.1| Piso0_004142 [Millerozyma farinosa CBS 7064]
gi|359379365|emb|CCE83562.1| Piso0_004142 [Millerozyma farinosa CBS 7064]
Length = 1453
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 176/396 (44%), Positives = 250/396 (63%), Gaps = 23/396 (5%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--YGKNK 476
I E+ +L L Q+TN+ GN S TL G R+ RNEF+LLH F +Y++PD++ Y KN
Sbjct: 737 ISFEIQILSLTKQLTNLAGNAWSHTLSGTRAGRNEFILLHEFKRNNYIVPDREDRYQKNS 796
Query: 477 KEGEET------GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYN 530
++ EA KK Y GGLV EP+KG + +I++MDFNSLYPSIIQE+N
Sbjct: 797 NNQQQAKLEANEDEATAVTSNKKPKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEFN 856
Query: 531 ICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
ICFTT+ + + +D D+ +LP+ G+LP + LV RR+VK L+K P
Sbjct: 857 ICFTTVDRDQYNLTLDEDRDLP----FLPDGDSSQGVLPRLLNTLVSRRREVKKLLKDPK 912
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN 645
++ QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T+ L E+
Sbjct: 913 ITKSEKAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAES 972
Query: 646 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
+ V+YGDTDS+MI V D KIG + K + N+ YK LE+DID V+K +LL KK
Sbjct: 973 IGLRVVYGDTDSVMIDTGVEDLKEAIKIGEEFKVQVNERYKLLEIDIDNVFKRLLLHAKK 1032
Query: 706 KYAALSIS-KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
KYAA+++S + GK E+KG+D+ RR++ QL+ + +V+ +IL Q+ + +L
Sbjct: 1033 KYAAMNVSIDKTTGKEKTILEVKGLDMRRREYCQLSKDISTYVLEKIL-SQADPEQALFS 1091
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+ + E KKIR N +P+ +I +L+K P
Sbjct: 1092 VYEYLEEEAKKIR----NNEIPVDKFKINTRLSKDP 1123
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 107/208 (51%), Gaps = 19/208 (9%)
Query: 197 DDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDR 256
D S L D + F+MF+LD E T+ LFGKV K+ S I Q+I +
Sbjct: 297 DASKVLGADQADDNTFKMFWLDYAE----VDNTLILFGKVPTKDGRVVSGVLQI-QDICK 351
Query: 257 KIYLLPRSEHLK-----TKEPVSIAQVYSEFDQIATQ-YKILDFKSRKIEKKYAFNLPGV 310
++Y LPR L + EPV+ V+ E + + Y + K++ + KYAF LPG+
Sbjct: 352 ELYFLPRDYRLSDEADFSNEPVNPLDVHDEIVPLLLEKYGLDSIKAKPEKMKYAFELPGI 411
Query: 311 PDLSEYLEVRYSAKCP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF 365
P EYL+V + P +PS+L G+TF HVFG E+ +L+R I GP WLE
Sbjct: 412 PKEKEYLKVLLPFRTPKNRFVNIPSNLEGETFKHVFGGNAGIFESFVLQRNIMGPCWLEV 471
Query: 366 PEAEKFPS--RISWCKYEVQCNQMEKIR 391
A+ F S +S C+ EV + E+I+
Sbjct: 472 TGAD-FNSIKNVSHCQVEVAVSSPEQIK 498
Score = 44.7 bits (104), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 5/52 (9%)
Query: 121 YEFTADENVYEEVSEKEYTERVLKRQE---DDWIDDDGGDGYVEDGREIFDD 169
Y DE +Y+EV E Y E KRQE DD+I DD G+GYV++G + +DD
Sbjct: 27 YSDDEDEQIYDEVDETTYREH--KRQEMMNDDFIVDDNGEGYVDNGLDEWDD 76
>gi|145349730|ref|XP_001419281.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579512|gb|ABO97574.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 990
Score = 321 bits (823), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 178/409 (43%), Positives = 261/409 (63%), Gaps = 18/409 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
++ IK T + + + +M ++ V+PL Q++N+ GN+ S+TL R++R E+LLLH F
Sbjct: 440 ALMHLIKCTEIDAKLSLHLMFKMEVVPLTKQLSNIAGNLWSKTLGHTRAQRVEYLLLHEF 499
Query: 461 HEKSYVLPDKQYGKNKKE-GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
H + +++PD+ K ++ +GE G+K +Y+GG VLEPKKG YD F++++D+
Sbjct: 500 HSRKHIVPDRLSAKERRRVAAASGEEEDDGGKKGPSYAGGRVLEPKKGLYDTFVLVLDYQ 559
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV---DTGILPSEIKKLVESRRQ 576
SLYPSIIQEYNIC+TT+ R + T E LP + D +LP I +V+SRR+
Sbjct: 560 SLYPSIIQEYNICYTTVR-RHFDAGEENTEIE-LPAPILSDKDFAVLPKVIANIVQSRRE 617
Query: 577 VKALM---KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
VK LM K P + QYD+RQ ALKLTANSMYGCLGF SRFFA+P+AAL+TA+GR
Sbjct: 618 VKGLMAREKDPARAK----QYDLRQLALKLTANSMYGCLGFSQSRFFAEPIAALITAQGR 673
Query: 634 EILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
+IL T+ L + +VIYGDTDS+M++ +D + +GN++ NK Y++L L+
Sbjct: 674 KILQRTEDLAKAKCELDVIYGDTDSIMVNTKSHDLNHSRALGNKLIRFVNKEYRKLVLEE 733
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
D +++ MLLLKKKKYAA+ + NG E+KG+D+VRRDW+ L + GK + ++L
Sbjct: 734 DYIFRSMLLLKKKKYAAMKVVNGPNGTKATKLEMKGLDIVRRDWAPLVKDVGKQTLEELL 793
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D D ++R+ IH+ ++ IR D+ V L+ ITKQLTKA E
Sbjct: 794 D----VDGEREERVNAIHDGLRTIRKDMVENRVQLSKYIITKQLTKAVE 838
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 98/198 (49%), Gaps = 24/198 (12%)
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKEN--NSHSSCCVIVQNIDRKIYLLP--------- 262
FF+DA E+ + PGTV+LFG+V V + + S C +VQN+ R +Y++P
Sbjct: 6 FFFMDAQEE-RESPGTVFLFGRVPVSSDPQSETISACAVVQNMQRCMYIVPTASTFADPD 64
Query: 263 --------RSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLS 314
+S+ +K P+S + +E ++ KI + K + ++Y F +P
Sbjct: 65 GEIAAQKAKSDLMKKLVPLS-GDLRAEVKEVLKARKIENSKITIVRRRYCFERKDIPQGP 123
Query: 315 EY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS 373
+ L+V+ A A PSD+ G F GT+ LE L L+ K+KGPSW+ A P+
Sbjct: 124 LFVLKVKIPATYAAFPSDIKGKHFVAALGTQAPMLELLTLKSKLKGPSWIALHGAAIVPT 183
Query: 374 --RISWCKYEVQCNQMEK 389
+ SWCK E+ K
Sbjct: 184 EKQKSWCKLELTLPNAHK 201
>gi|380481728|emb|CCF41675.1| DNA polymerase, partial [Colletotrichum higginsianum]
Length = 1058
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 190/430 (44%), Positives = 269/430 (62%), Gaps = 20/430 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++ + +I + ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 384 GMMNYVTHMETDTHFITALALQVQLLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 443
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
H Y+ PDKQ + + EE + ++G+G+KK Y GGLV EP+KG YDKF+++MDFNS
Sbjct: 444 HRNKYICPDKQTFRGRMAQEE-NQDDEGEGKKKDKYKGGLVFEPEKGLYDKFVLVMDFNS 502
Query: 521 LYPSIIQEYNICFTTIPVRML-QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
LYPSIIQE+NICFTT+ L QD D +P+ Q D GILP I LV R+QVKA
Sbjct: 503 LYPSIIQEFNICFTTVDRSALEQDEDAV---PEVPKDQ-DQGILPRLIATLVNRRKQVKA 558
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK S D L +DI+Q+ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +T
Sbjct: 559 LMKDKGASQDQLATWDIKQQALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRST 618
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E+ +VIYGDTDS+MI+ NV + FK+G + K N+ Y+ LE+DID V++ +
Sbjct: 619 KELAESNQLQVIYGDTDSVMINANVENVSDAFKVGQEFKKAVNERYRLLEIDIDNVFRRI 678
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--DEQSY 757
LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E ++++IL DE
Sbjct: 679 LLQAKKKYAAINLVQ-KDGKFIEQMEVKGLDMKRREYCGLSKEISSKILNEILSGDET-- 735
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA----PEGGKVCITQIRLS 813
+ + IHE+++ I + +P I QL KA P + Q+ L
Sbjct: 736 -----EKSIARIHEYLRDISGKMREQAIPTQKYIIFTQLGKAPTEYPNADSMPQVQVALR 790
Query: 814 RNRRGRRRRR 823
+G+ RR
Sbjct: 791 EIAKGKNVRR 800
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 24/172 (13%)
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT-KEP 272
MF+ D + D+ G++ LFGKV K+ + SC V V NI RK++ LP + + K P
Sbjct: 1 MFWTD-YTDVN---GSLCLFGKVLNKKTGLYVSCFVKVDNILRKLFFLPAKQKYRAEKTP 56
Query: 273 VSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDL 332
+++ +K + +KYAF LPG+P +EYL+ Y P +
Sbjct: 57 MNVGM----------------YKIKACTRKYAFELPGIPKETEYLKCLYPYTKPVIDGSA 100
Query: 333 SGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
+G+TFSHVFGT T+ E +L + I GP WL+ +A+ F + S CK EV
Sbjct: 101 TGETFSHVFGTNTALFEQFVLWKNIMGPCWLKITDAD-FGALKNASHCKLEV 151
>gi|330918671|ref|XP_003298310.1| hypothetical protein PTT_08978 [Pyrenophora teres f. teres 0-1]
gi|311328568|gb|EFQ93598.1| hypothetical protein PTT_08978 [Pyrenophora teres f. teres 0-1]
Length = 1446
Score = 320 bits (821), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 184/430 (42%), Positives = 264/430 (61%), Gaps = 15/430 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++K + +I I ++ +LPL +TN+ GN RTL G R+ERNE++LLH F
Sbjct: 720 GLLNYVKHCQADAYFIAAISIKVQMLPLTKVLTNLAGNSWGRTLSGTRAERNEYILLHEF 779
Query: 461 HEKSYVLPDKQYGKNKKE--GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
++ Y+ PDKQ+GK+K + E +KK + GGLV EP+KG YDKFI++MDF
Sbjct: 780 YKNKYICPDKQWGKSKAKVDEEAAEGEEGADAKKKDKFKGGLVFEPEKGLYDKFILVMDF 839
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQE+NICFTT+ L + D +P HQ D GILP I LV RR+VK
Sbjct: 840 NSLYPSIIQEFNICFTTVERSDLSEDDDKV--PEVPTHQ-DQGILPRLIATLVSRRREVK 896
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
LMK + + D L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 897 KLMKAKDATPDQLATWDIKQMALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREILRK 956
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK + E VIYGDTDS+MI+ NV++ K+GN+ K E N Y+ LE+DID V++
Sbjct: 957 TKDMAEEKALRVIYGDTDSVMINTNVDNIQDALKLGNEFKKEVNDSYRLLEIDIDNVFRR 1016
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E +++ +L +
Sbjct: 1017 ILLHAKKKYAAINMVPV-DGKYIEKLEVKGLDMRRREYCALSKETSTELLNFLLSGEDP- 1074
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA----PEGGKVCITQIRLSR 814
+ ++NIH H++++ + +P I QL K P GG + Q+ L
Sbjct: 1075 ----EVVVENIHNHLRELSKQMREYAIPSRKYTIYTQLGKNPNEYPNGGSMPSVQVALRL 1130
Query: 815 NRRGRRRRRR 824
+G+ + +
Sbjct: 1131 QAKGKHVKAK 1140
Score = 122 bits (305), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 11/185 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS-EHLK-- 268
R F++D E G + LFGKV ++ ++SSC V V NI RK+Y LPR H++
Sbjct: 321 LRFFWIDYTE----INGNLCLFGKVKDNKSGNYSSCFVKVDNILRKLYFLPREYRHVRGV 376
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E + ++ V E D I +++++ K + +KYAF LP +P ++YL++ Y
Sbjct: 377 ATDEEIGLSDVSDEVDSIMSKHRVNLHKIKPCTRKYAFELPDIPKEADYLKLLYGYDKMP 436
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF--PEAEKFPSRISWCKYEVQCN 385
L SDL G+TFSHVFGT TS E +L + I GP WL+ P+ S SWCK EV +
Sbjct: 437 LSSDLKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIDNPDFGAL-SNASWCKLEVLVS 495
Query: 386 QMEKI 390
+ I
Sbjct: 496 KPNNI 500
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 121 YEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGREIFDDD 170
YE +E +Y+ V E+ Y + V R EDD++ D G+GYV+DGRE +DDD
Sbjct: 30 YEVAEEEQLYDTVDEEGYKKIVRGRLDEDDFVVGDEGEGYVDDGREEWDDD 80
>gi|358053935|dbj|GAA99900.1| hypothetical protein E5Q_06603 [Mixia osmundae IAM 14324]
Length = 1500
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 180/405 (44%), Positives = 246/405 (60%), Gaps = 33/405 (8%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGG-RSERNEFLLLHA 459
++ F++ + + + I E+ VLPL Q+TN+ GN RTL GG RSERNE++LLH
Sbjct: 807 ALIRFVRHCEADAYFQMAIAFEVQVLPLTQQLTNLSGNSWGRTLSGGSRSERNEYILLHE 866
Query: 460 FHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
FH Y++PDK G+ ++ E+ Y GG V EPKKG +DK+II+MDFN
Sbjct: 867 FHRLKYIVPDKFRGRVEEVKEK--------------YMGGKVFEPKKGLWDKYIIVMDFN 912
Query: 520 SLYPSIIQEYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
SLYPSIIQEYNI FTT+ + DS LP ++ G+LP I LV+
Sbjct: 913 SLYPSIIQEYNIDFTTVDRSKDDGAKAGADS-----IPDLPSSDLEQGVLPKLIATLVQR 967
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LMK +++ MQYDIRQKALKLTANSMYGCLGF SRF+A+ LAAL T KGR
Sbjct: 968 RQLVKTLMKDRDVTPARYMQYDIRQKALKLTANSMYGCLGFAGSRFYARALAALTTYKGR 1027
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL NTK L E + +VIYGDTDS+MI+ NV D I + K N+ Y+ LE+D D
Sbjct: 1028 EILTNTKELAEGIQLDVIYGDTDSVMINTNVTDLKEALLIASNFKKLINQRYRLLEIDTD 1087
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
V+ MLLL+KKKYAAL + ++ G + E+KG+D RR++ +LA E + + I+
Sbjct: 1088 AVFTRMLLLQKKKYAALKVEDMTTGAT--ALEVKGLDQRRREFCKLAKEVSENTLRFIMS 1145
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+ S + ++ +HE++ + ++ G PL I KQL+K
Sbjct: 1146 GE-----STEVVVEKLHEYLAAVSDEVRAGLKPLEDFIINKQLSK 1185
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 26/207 (12%)
Query: 196 KDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNID 255
KDDSL ++LD E + +P + L GKV+ S+ SCC+ + N+
Sbjct: 389 KDDSL------------HFYWLDYQEPPFPEP--LRLIGKVYDHATQSYVSCCLSIHNMM 434
Query: 256 RKIYLLPR-------SEHLKTKEPVS-IAQVYSEFDQIATQ--YKILDFKSRKIEKKYAF 305
R I+ LP+ ++ +T+E + + V E +A + K F+ + + +KYAF
Sbjct: 435 RNIFALPKIPVQAISDDYEETEEELQRLTNVADELQALAVRSGVKATQFEYKFVNRKYAF 494
Query: 306 NLPGVP-DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE 364
VP + ++Y++ Y P + + SG FSH+FGT+TS E+ L+RK+KGP WLE
Sbjct: 495 EDDSVPREKTQYVKAMYPFTEPII-QETSGQFFSHLFGTRTSAFEHFALKRKLKGPCWLE 553
Query: 365 FPEAEKFPSRISWCKYEVQCNQMEKIR 391
AE +SWCK EV C + + IR
Sbjct: 554 IKNAELSDIAMSWCKLEVICKEPKDIR 580
>gi|296813443|ref|XP_002847059.1| DNA polymerase alpha catalytic subunit [Arthroderma otae CBS 113480]
gi|238842315|gb|EEQ31977.1| DNA polymerase alpha catalytic subunit [Arthroderma otae CBS 113480]
Length = 1463
Score = 319 bits (818), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 252/404 (62%), Gaps = 12/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ +L +LPL +TN+ GN SRTL G R+ERNE++LLH F
Sbjct: 749 GLMNFLSHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEF 808
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
+ Y+ PDK K + + EE E + +KK Y GGLV EP+KG YDK +++MDFNS
Sbjct: 809 YRGKYICPDKYGQKTQIKVEENEEEDGIDKKKKEKYKGGLVFEPEKGLYDKHVLVMDFNS 868
Query: 521 LYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
LYPSIIQEYNICFTT+ ++D +P+ GILP I LV RR+VK L
Sbjct: 869 LYPSIIQEYNICFTTVDRHASSENDREESVPEVPDSSQALGILPRLIATLVNRRREVKKL 928
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK N + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL NTK
Sbjct: 929 MKNKNATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRNTK 988
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
L E VIYGDTDS+MI+ N ++ K+GN+ K N+ Y+ LE+DID V+K +L
Sbjct: 989 ELAETNQLRVIYGDTDSVMINTNTDNVQEALKVGNEFKRLVNQRYRLLEIDIDNVFKRLL 1048
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
L KKKYAA+++S++ +G + E+KG+D+ RR++ L+ E ++ +IL
Sbjct: 1049 LHAKKKYAAINLSEV-DGTYVEHLEVKGLDMKRREFCALSKEVSTKLLHEIL-------- 1099
Query: 761 SLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD L IH++++++ + +P+ I +L+K P+
Sbjct: 1100 SGDDVEIVLNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPD 1143
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 105/184 (57%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
R F+LD E G++ LFGKV K N+S+ S V V NI RK+Y LPR +
Sbjct: 349 LRFFWLDYTE----VNGSLCLFGKVKNKANDSYVSAFVKVDNILRKLYFLPREYKYRRGQ 404
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D+I ++ K+ K + +KYAF LP +P +EYL++ Y PA
Sbjct: 405 TTDEEVDMEDVYGEVDEIMSRSKVEMHKIKPCTRKYAFELPDIPKETEYLKLMYPYTKPA 464
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP DL G+TFSHVFGT T+ E +L + I GP WL+ +A+ + SWCK E Q +
Sbjct: 465 LPMDLKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTAVNGASWCKLECQVSN 524
Query: 387 MEKI 390
+I
Sbjct: 525 PAEI 528
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGGDGYV 160
A +L+ L+ G K YE DE++YE+V E+ Y + V KR + DD++ DD G+GY
Sbjct: 5 AKLAELRALRASGQKRLATYEVQEDEDIYEQVDEEGYKKVVRKRLDRDDFVVDDNGEGYA 64
Query: 161 EDGREIFDD 169
+DGRE +DD
Sbjct: 65 DDGREEWDD 73
>gi|402223440|gb|EJU03504.1| DNA polymerase alpha catalytic subunit [Dacryopinax sp. DJM-731 SS1]
Length = 1365
Score = 319 bits (818), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 182/409 (44%), Positives = 256/409 (62%), Gaps = 22/409 (5%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ + + + + I + +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 660 LLHFVRHCEMDTFFQMAIAARVQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFH 719
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGG------LVLEPKKGFYDKFIIL 515
Y++PDK +GK E + +G AA LV EPK+G +DK+I++
Sbjct: 720 RLKYIVPDKMWGKKTANAAAKAETEELEGGVPAAGKKKDKYKGGLVFEPKRGLWDKYILV 779
Query: 516 MDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEH---QVDTGILPSEIKKLVE 572
MDFNSLYPSIIQEYNI FTTI Q + E +P+ + G+LP I LV
Sbjct: 780 MDFNSLYPSIIQEYNIDFTTIE----QPEQVEGEEEKIPDTPATDIAQGVLPRLIATLVN 835
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
RRQVK LMK + S L QYDIRQKALKLTANSMYGCLGF SRF+A+PLAAL T KG
Sbjct: 836 RRRQVKNLMKDKSASKAKLQQYDIRQKALKLTANSMYGCLGFEYSRFYARPLAALTTFKG 895
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL +T+ L E+L +V+YGDTDS+ ++ NV+D + KI N K N+ YK LE+D+
Sbjct: 896 REILTHTRELAESLQLDVVYGDTDSVFVNSNVSDLEEAKKIANDFKKHVNERYKLLEIDL 955
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DGV++ +LLL+KKKYAAL + + +G S E+KG+D+ RR++ L+ + V+ IL
Sbjct: 956 DGVFQRLLLLQKKKYAALKVEE--DGTT--STEVKGLDMKRREYCALSKTVSQAVLEFIL 1011
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + + ++ IHE++ KI D+ G + + I K+L K PE
Sbjct: 1012 SGE-----ATEIVVERIHEYLTKIGEDVKAGKIDMDEFIIFKRLGKNPE 1055
Score = 124 bits (311), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 106/184 (57%), Gaps = 12/184 (6%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ R F+LD E+ G VY GKV K SCCV ++NI+R I++L R
Sbjct: 243 EDDGSLRFFWLDYLEN----DGKVYFVGKVVDKVTGKWVSCCVAIENIERNIFVLKRHRK 298
Query: 267 L-------KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLE 318
+ +T E + A+V+ +FD + + I ++++ ++++YAF VP + +E+++
Sbjct: 299 MGMRKDGAETDEIPTNAEVFQDFDHVRRKAGIQKWRAKFVKRRYAFGETDVPTEETEWMK 358
Query: 319 VRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWC 378
V Y P LP+D+SG +FS VFGT TS E L+L+RKI GP WL+ E + ISWC
Sbjct: 359 VVYGFGEPQLPNDISGPSFSRVFGTSTSAFELLVLKRKIMGPCWLQIKEPTVSDTGISWC 418
Query: 379 KYEV 382
K EV
Sbjct: 419 KLEV 422
>gi|390594500|gb|EIN03911.1| DNA polymerase alpha catalytic subunit [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1473
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 190/471 (40%), Positives = 273/471 (57%), Gaps = 21/471 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ L + Y + I ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 763 LLTFVRHCELDAHYQMAIASKVQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFH 822
Query: 462 EKSYVLPDKQYGKNKKE-------GEETGEAN--KGKGRKKAAYSGGLVLEPKKGFYDKF 512
Y+ PDK +GK G++ A K+ Y GGLV EPK+G +DKF
Sbjct: 823 RLKYICPDKTWGKKAAAAVKAEAEGDDPNGATVGGKGKGKRDKYKGGLVFEPKRGLWDKF 882
Query: 513 IILMDFNSLYPSIIQEYNICFTTI-PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
I++MDFNSLYPSIIQEYNI FTT+ PV D D P+ G+LP I LV
Sbjct: 883 ILVMDFNSLYPSIIQEYNIDFTTVEPVE--DDEDGEERIPDPPDSTTAQGVLPRLIATLV 940
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
RRQVKALMK S LMQYDI+Q+ALKLTANSMYGCLGF SRF+A+PLAAL T K
Sbjct: 941 NRRRQVKALMKDKTASQAKLMQYDIKQQALKLTANSMYGCLGFEYSRFYARPLAALTTFK 1000
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREIL T+ L E+L +V+YGDTDS+ ++ D KI K N+ Y+ LE+D
Sbjct: 1001 GREILTATRELAESLQLDVVYGDTDSVFVNSGATDLAEALKIAADFKKAVNERYRLLEID 1060
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+DG+++ +LLL+KKKYAA+ K+ +G S E+KG+D+ RR++ L+ ++V+ QI
Sbjct: 1061 LDGIFQRLLLLQKKKYAAI---KVEDGTRT-STEVKGLDMKRREYCALSKNVSQYVLEQI 1116
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIR 811
L + + + ++ IH+++ I ++ G + L + K+L K PE +Q
Sbjct: 1117 LSGE-----ATEIVVEQIHDYLTTIGQNVREGKIKLDDFIVFKRLGKNPEDYPDAKSQPH 1171
Query: 812 LSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGG 862
+ R + R + + + G + +K K +E +GG
Sbjct: 1172 VQVALRMKTRGGTARSGDVIPYVFCLGASGESSKTGQADKAKHPDEVRKGG 1222
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 14/194 (7%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS-- 264
E+ R F+LD E G +Y GK+ K + S CV ++N+ R +++LPR+
Sbjct: 353 EDDGSLRFFWLDYME----HEGKLYFIGKLKEKTSGQWVSICVTIENLQRNLFVLPRALR 408
Query: 265 -------EHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEY 316
++T PV ++ VYS+FDQI Q I ++ + +++KYAF P VP D +E+
Sbjct: 409 VEQDEDGNLVETDVPVEMSDVYSDFDQIRQQAGIKSWRCKPVKRKYAFGEPDVPRDEAEW 468
Query: 317 LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRIS 376
L+V Y + P +PS +S FS +FGT T+ E L+L+RKI GP WL + IS
Sbjct: 469 LKVVYPFEEPTIPSTVSSPNFSRIFGTNTTAFELLVLKRKIMGPCWLNIKHPKVEHKGIS 528
Query: 377 WCKYEVQCNQMEKI 390
WCK E + + I
Sbjct: 529 WCKVEATVSDPKDI 542
>gi|342875492|gb|EGU77242.1| hypothetical protein FOXB_12251 [Fusarium oxysporum Fo5176]
Length = 1161
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 187/433 (43%), Positives = 270/433 (62%), Gaps = 24/433 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + YI + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 738 GLLDYITHMEADTHYIAALALGVQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 797
Query: 461 HEKSYVLPDKQ-YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDKQ + ++ E E +G+KK Y GGLV EP+KG YDKF+++MDFN
Sbjct: 798 YRNKYICPDKQTFRSRQRAEEAQREEEAVEGKKKDKYKGGLVFEPEKGLYDKFVLVMDFN 857
Query: 520 SLYPSIIQEYNICFTTI--PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
SLYPSIIQE+NICFTT+ P ++ ++ + P +Q D GILP I LV RRQV
Sbjct: 858 SLYPSIIQEFNICFTTVDRPATNGEEDEVPEV----PINQ-DQGILPRLIATLVSRRRQV 912
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K+LMK + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 913 KSLMKDKKATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTFKGREILR 972
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ + +VIYGDTDS+MI+ NV++ FK+GN K N+ YK LE+DID V++
Sbjct: 973 STKELAESNSLQVIYGDTDSVMINANVDNVADAFKVGNDFKKAVNEQYKLLEIDIDNVFR 1032
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E + ++++IL
Sbjct: 1033 RILLQAKKKYAAINLVE-KDGKFIEKMEVKGLDMKRREYCALSKEISQHLLNEIL----- 1086
Query: 758 TDYSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA----PEGGKVCITQI 810
S DD + IHE++ I + +P+ I QL KA P+ + Q+
Sbjct: 1087 ---SGDDTEVSIARIHEYLSDIAGKMREQTIPVQKYIIHTQLGKAPNDYPDSNSMPQVQV 1143
Query: 811 RLSRNRRGRRRRR 823
L +G+ R+
Sbjct: 1144 ALREMAKGKTVRK 1156
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 92/165 (55%), Gaps = 7/165 (4%)
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFD 283
G++ LFGKV K+ S+ SC V V NI RK+Y LPR L+ T E V + VY E D
Sbjct: 348 GSLCLFGKVLNKKTRSYVSCFVKVDNILRKLYFLPRQHRLQDGEETGEEVEMMNVYDEID 407
Query: 284 QIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGT 343
+ T+ + +K + +KYAF L VP ++Y+++ Y P + + G+T+SHVFG+
Sbjct: 408 TMMTKMNVGMYKIKACTRKYAFELRDVPKEAQYMKLLYPYNKPEVDPNRPGETYSHVFGS 467
Query: 344 KTSFLENLLLERKIKGPSWLEFPEA--EKFPSRISWCKYEVQCNQ 386
T+ E +L + I GP WL+ +A +K S CK EV +
Sbjct: 468 NTALFEQFVLWKNIMGPCWLKIEDADFDKL-KNASHCKLEVLADH 511
Score = 45.4 bits (106), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 104 AAFQKLKDLK--GQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +LK L+ G+ V Y+ +N+Y+EV E Y + V +R +DD++ DD G+GY
Sbjct: 5 ARLAELKALRESGKKVFDTYKVADVDNLYDEVDEDGYKKVVRERLNQDDFVVDDNGEGYA 64
Query: 161 EDGREIFD 168
+DGRE +D
Sbjct: 65 DDGREDWD 72
>gi|302509736|ref|XP_003016828.1| hypothetical protein ARB_05121 [Arthroderma benhamiae CBS 112371]
gi|291180398|gb|EFE36183.1| hypothetical protein ARB_05121 [Arthroderma benhamiae CBS 112371]
Length = 1467
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/405 (43%), Positives = 254/405 (62%), Gaps = 13/405 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ +L +LPL +TN+ GN SRTL G R+ERNE++LLH F
Sbjct: 752 GLMNFLSHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEF 811
Query: 461 HEKSYVLPDKQYGKNKKEGEET-GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK K + + EE GE + +KK Y GGLV EP+KG YDK +++MDFN
Sbjct: 812 YRGKYICPDKYGHKTQIKIEENEGEEDGADKKKKEKYKGGLVFEPEKGLYDKHVLVMDFN 871
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ ++D +P+ GILP I LV RR+VK
Sbjct: 872 SLYPSIIQEFNICFTTVDRHASSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVKK 931
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL NT
Sbjct: 932 LMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRNT 991
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E VIYGDTDS+MI+ N ++ K+GN+ K N+ Y+ LE+DID V+K +
Sbjct: 992 KELAETNQLRVIYGDTDSVMINTNTDNVQEALKVGNEFKRLVNQRYRLLEIDIDNVFKRL 1051
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA+++S++ +GK + E+KG+D+ RR++ L+ E ++ +IL
Sbjct: 1052 LLHAKKKYAAINLSEV-DGKYVEHLEVKGLDMKRREFCALSKEVSTKLLHEIL------- 1103
Query: 760 YSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD L IH++++++ + +P+ I +L+K P+
Sbjct: 1104 -SGDDVEVVLNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPD 1147
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/184 (41%), Positives = 102/184 (55%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R F+LD E G++ LFGKV K NN++ S V V NI RK+Y LPR
Sbjct: 352 LRFFWLDYTE----INGSLCLFGKVKNKTNNNYVSAFVKVDNILRKLYFLPREYKYIRGQ 407
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D I ++ K+ K + +KYAF LP +P +EYL++ Y PA
Sbjct: 408 TTSEEVDMEDVYGEVDNIMSRSKVEMHKIKPCTRKYAFELPDIPKEAEYLKLMYPYTKPA 467
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP +L G+TFSHVFGT T+ E +L + I GP WL+ +A+ + SWCK E Q
Sbjct: 468 LPMELKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTAVNGASWCKLECQVTN 527
Query: 387 MEKI 390
+I
Sbjct: 528 PAEI 531
Score = 53.5 bits (127), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 106 FQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGGDGYVED 162
++L+ L+ G K YE DE++YE+V E+ Y + V KR + DD++ DD G+GY +D
Sbjct: 8 LEELRALRASGKKRLSTYEIQEDEDIYEQVDEEGYKKVVRKRLDRDDFVVDDNGEGYADD 67
Query: 163 GREIFDD 169
GRE +DD
Sbjct: 68 GREEWDD 74
>gi|451996792|gb|EMD89258.1| hypothetical protein COCHEDRAFT_1180672 [Cochliobolus heterostrophus
C5]
Length = 1470
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 185/432 (42%), Positives = 266/432 (61%), Gaps = 19/432 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++K + +I I ++ +LPL+ +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 749 GLLNYVKHCQADAYFIAAIAIKVQMLPLSKVLTNLAGNSWARTLSGTRAERNEYILLHEF 808
Query: 461 HEKSYVLPDKQYGKNK--KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
+ Y+ PDKQ+GK+K E E +KK + GGLV EP+KG YDKFI++MDF
Sbjct: 809 YRNKYICPDKQWGKSKVKAEEEAAEGEEGADAKKKDKFKGGLVFEPEKGLYDKFILVMDF 868
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPE--HQVDTGILPSEIKKLVESRRQ 576
NSLYPSIIQEYNICFTT+ + SDI+ + +PE D GILP I LV RR+
Sbjct: 869 NSLYPSIIQEYNICFTTV-----ERSDISEDDDKVPEVPSDQDQGILPRLIATLVSRRRE 923
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMK + + D L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 924 VKKLMKAKDATPDQLATWDIKQMALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREIL 983
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
TK + E VIYGDTDS+MI+ NV++ K+GN+ K E N YK LE+DID V+
Sbjct: 984 RKTKDMAEEKALRVIYGDTDSVMINTNVDNIQDAIKLGNEFKKEVNDSYKLLEIDIDNVF 1043
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
+ +LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E +++ +L +
Sbjct: 1044 RRILLHAKKKYAAINMVPV-DGKYIEKLEVKGLDMRRREYCALSKETSTELLNFLLSGED 1102
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRL 812
+ ++ IH H++++ + +P I QL K P+ G + Q+ L
Sbjct: 1103 P-----EVVVEKIHNHLRELSKQMREYAIPPRKYTIYTQLGKNPKEYPNGNSMPSVQVAL 1157
Query: 813 SRNRRGRRRRRR 824
+G+ + +
Sbjct: 1158 RLMAKGKHVKAK 1169
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 9/182 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS-- 264
E+ RMF++D E G++ LFGKV +++ ++ SC + + NI RK+Y LPR
Sbjct: 345 EDDGSLRMFWIDYTE----LNGSLCLFGKVKDRKSGNYVSCFLKIDNILRKLYFLPREYR 400
Query: 265 --EHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
+ T E + ++ V E D I +++++ K + +KYAF L +P ++YL++ Y
Sbjct: 401 QVRGVTTDEEIGLSDVSDEVDSIMSKHRVNLHKIKPCTRKYAFELADIPKEADYLKLLYG 460
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP-SRISWCKYE 381
L +DL+G+TFSHVFGT TS E +L + I GP WL+ + P + SWCK E
Sbjct: 461 YDKMPLSTDLTGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIDAPDFGPVANASWCKLE 520
Query: 382 VQ 383
Q
Sbjct: 521 AQ 522
Score = 47.4 bits (111), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 121 YEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGREIFDDD 170
YE +E +Y+EV E+ Y + V R EDD++ D G+GYV+DGRE +DDD
Sbjct: 30 YEVAEEEQLYDEVDEEGYKKIVRGRLDEDDFVVGDEGEGYVDDGREEWDDD 80
>gi|410056286|ref|XP_003317445.2| PREDICTED: DNA polymerase alpha catalytic subunit [Pan troglodytes]
Length = 1381
Score = 317 bits (813), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 186/413 (45%), Positives = 253/413 (61%), Gaps = 75/413 (18%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 713 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 772
Query: 462 EKSYVLPDKQYGK--NKKEGEE----TGEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 773 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 832
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 833 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 891
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KL LM ++ K+ +YG
Sbjct: 892 KLXXXXXXXXILMHT-------------KEMVQKMNLEVIYG------------------ 920
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
DTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 921 -------------------------DTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 955
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 956 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1015
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1016 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1063
Score = 168 bits (426), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 142/286 (49%), Gaps = 65/286 (22%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 318 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 377
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+
Sbjct: 378 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSK---- 433
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
A+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 434 ---------------------AEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 472
Query: 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
WLE + +SWCK E M ++ ++
Sbjct: 473 WLEVKSPQLLNQPVSWCKVE---------------------------AMALKPDLVNVIK 505
Query: 422 ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+++ PL + ++ +T+ ++ +NE + + A S+ L
Sbjct: 506 DVSPPPLVVMAFSM------KTMQNAKNHQNEIIAMAALVHHSFAL 545
Score = 49.3 bits (116), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|302652611|ref|XP_003018152.1| hypothetical protein TRV_07848 [Trichophyton verrucosum HKI 0517]
gi|291181764|gb|EFE37507.1| hypothetical protein TRV_07848 [Trichophyton verrucosum HKI 0517]
Length = 1467
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/405 (43%), Positives = 254/405 (62%), Gaps = 13/405 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ +L +LPL +TN+ GN SRTL G R+ERNE++LLH F
Sbjct: 752 GLMNFLSHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEF 811
Query: 461 HEKSYVLPDKQYGKNKKEGEET-GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK K + + EE GE + +KK Y GGLV EP+KG YDK +++MDFN
Sbjct: 812 YRGKYICPDKYGHKTQIKIEENEGEEDGADKKKKEKYKGGLVFEPEKGLYDKHVLVMDFN 871
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ ++D +P+ GILP I LV RR+VK
Sbjct: 872 SLYPSIIQEFNICFTTVDRHTSSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVKK 931
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL NT
Sbjct: 932 LMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRNT 991
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E VIYGDTDS+MI+ N ++ K+GN+ K N+ Y+ LE+DID V+K +
Sbjct: 992 KELAETNQLRVIYGDTDSVMINTNTDNVQEALKVGNEFKRLVNQRYRLLEIDIDNVFKRL 1051
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA+++S++ +GK + E+KG+D+ RR++ L+ E ++ +IL
Sbjct: 1052 LLHAKKKYAAINLSEV-DGKYVEHLEVKGLDMKRREFCALSKEVSTKLLHEIL------- 1103
Query: 760 YSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD L IH++++++ + +P+ I +L+K P+
Sbjct: 1104 -SGDDVEVVLNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPD 1147
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R F+LD E G++ LFGKV K NNS+ S V V NI RK+Y LPR
Sbjct: 352 LRFFWLDYTE----INGSLCLFGKVKNKTNNSYVSAFVKVDNILRKLYFLPREYKYVRGQ 407
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D I ++ K+ K + +KYAF LP +P +EYL++ Y PA
Sbjct: 408 PTSEEVDMEDVYGEVDNIMSRSKVEMHKIKPCTRKYAFELPDIPKEAEYLKLMYPYTKPA 467
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP +L G+TFSHVFGT T+ E +L + I GP WL+ +A+ + SWCK E Q
Sbjct: 468 LPIELKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTAVNGASWCKLECQVTN 527
Query: 387 MEKI 390
I
Sbjct: 528 PADI 531
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 106 FQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGGDGYVED 162
++LK L+ G K YE DE++YE+V E+ Y + V KR + DD++ DD G+GY +D
Sbjct: 8 LEELKALRASGRKRLLTYEVQEDEDIYEQVDEEGYKKVVRKRLDRDDFVVDDNGEGYADD 67
Query: 163 GREIFDD 169
GRE +DD
Sbjct: 68 GREEWDD 74
>gi|326479330|gb|EGE03340.1| DNA polymerase alpha catalytic subunit [Trichophyton equinum CBS
127.97]
Length = 1467
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 252/405 (62%), Gaps = 13/405 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ +L +LPL +TN+ GN SRTL G R+ERNE++LLH F
Sbjct: 752 GLMNFLSHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEF 811
Query: 461 HEKSYVLPDKQYGKNKKEGEET-GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK K + + EE GE + +KK Y GGLV EP+KG YDK +++MDFN
Sbjct: 812 YRGKYICPDKYGHKTQIKVEENEGEEDGADKKKKEKYKGGLVFEPEKGLYDKHVLVMDFN 871
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ ++D +P+ GILP I LV RR+VK
Sbjct: 872 SLYPSIIQEFNICFTTVDRHASSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVKK 931
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL NT
Sbjct: 932 LMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRNT 991
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E VIYGDTDS+MI+ N + K+GN K N+ YK LE+DID V+K +
Sbjct: 992 KELAETNQLRVIYGDTDSVMINTNTDSVQEALKVGNDFKRLVNQRYKLLEIDIDNVFKRL 1051
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA+++S++ +GK + E+KG+D+ RR++ L+ E ++ +IL
Sbjct: 1052 LLHAKKKYAAINLSEV-DGKYVEHLEVKGLDMKRREFCALSKEVSTKLLHEIL------- 1103
Query: 760 YSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD L IH++++++ + +P+ I +L+K P+
Sbjct: 1104 -SGDDVEVVLNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPD 1147
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R F+LD E G++ LFGKV K NNS+ S V V NI RK+Y LPR
Sbjct: 352 LRFFWLDYTE----INGSLCLFGKVKNKTNNSYVSAFVKVDNILRKLYFLPREYKYVRGQ 407
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D I ++ K+ K + +KYAF LP +P +EYL++ Y PA
Sbjct: 408 STSEEVDMEDVYGEVDNIMSRSKVEMHKIKPCTRKYAFELPDIPKETEYLKLMYPYTKPA 467
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP +L G+TFSHVFGT T+ E +L + I GP WL+ +A+ + SWCK E Q
Sbjct: 468 LPMELKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTAVNGASWCKLECQVTN 527
Query: 387 MEKI 390
I
Sbjct: 528 PADI 531
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 106 FQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGGDGYVED 162
+LK L+ G K YE DE++YE+V E+ Y + V KR + DD++ DD G+GY +D
Sbjct: 8 LAELKALRASGQKRLATYEVQEDEDIYEQVDEEGYKKVVRKRLDRDDFVVDDNGEGYADD 67
Query: 163 GREIFDD 169
GRE +DD
Sbjct: 68 GREEWDD 74
>gi|396491082|ref|XP_003843485.1| similar to DNA polymerase alpha catalytic subunit [Leptosphaeria
maculans JN3]
gi|312220064|emb|CBY00006.1| similar to DNA polymerase alpha catalytic subunit [Leptosphaeria
maculans JN3]
Length = 1461
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 182/432 (42%), Positives = 265/432 (61%), Gaps = 19/432 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++K + +I I ++ +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 742 GLLNYVKHCQADAYFIAAISMKVQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 801
Query: 461 HEKSYVLPDKQYGKNKKEGEETG-EANKGKGRKKAAYSGG-LVLEPKKGFYDKFIILMDF 518
H+ Y+ PDKQ+GK+K + EE E +G KK G LV EP+KG YDKFI++MDF
Sbjct: 802 HKNKYICPDKQWGKSKVKIEEDAVEGEEGADAKKKDKFKGGLVFEPEKGLYDKFILVMDF 861
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV--DTGILPSEIKKLVESRRQ 576
NSLYPSIIQE+NICFTT+ L + D + +PE + GILP I LV RR+
Sbjct: 862 NSLYPSIIQEFNICFTTVERADLSEDD-----DKVPEVPATQEQGILPRLIATLVSRRRE 916
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMK + + D L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 917 VKKLMKAKDATPDQLATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREIL 976
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
TK + E VIYGDTDS+MI+ NV++ K+GN+ K E N Y+ LE+DID V+
Sbjct: 977 RKTKDMAEEKALRVIYGDTDSVMINTNVDNIQDALKLGNEFKKEVNDSYRLLEIDIDNVF 1036
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
+ +LL KKKYAA+++ + +GK + E+KG+D+ RR++ L+ E +++ +L +
Sbjct: 1037 RRILLHAKKKYAAINMIPV-DGKYVEKLEVKGLDMRRREYCALSKETSTELLNFLLSGED 1095
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRL 812
+ ++ IH H++++ + +P I QL K P+ G + Q+ L
Sbjct: 1096 P-----ETVVEKIHNHLRELSKRMREYAIPTRKYTIYTQLGKNPKEYPNGNSMPSVQVAL 1150
Query: 813 SRNRRGRRRRRR 824
+G+ + +
Sbjct: 1151 RLMAKGKHVKAK 1162
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 104/185 (56%), Gaps = 11/185 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS----EHL 267
MF++D + +I G++ LFGKV ++ +++SC + + NI RK+Y LPR +
Sbjct: 343 LHMFWID-YTEIN---GSLCLFGKVKDRQTGNYASCFLKIDNILRKLYFLPREYRQVRGV 398
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V ++ V E D I +++++ K + +KYAF LP +P ++YL++ Y
Sbjct: 399 TTDEEVRLSDVSDEVDSIMSRHRVGMHKIKPCTRKYAFELPDIPKEADYLKLLYGYDKMP 458
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF--PEAEKFPSRISWCKYEVQCN 385
L +DLSG+TFSHVFGT TS E +L + + GP WL+ P+ SWCK E Q
Sbjct: 459 LSADLSGETFSHVFGTNTSLFEQFVLWKNVMGPCWLKIDNPDLGAI-HNASWCKLEAQVA 517
Query: 386 QMEKI 390
+ I
Sbjct: 518 KPNSI 522
Score = 47.8 bits (112), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 105 AFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVE 161
A ++K L+ G YE +E +Y+ V E Y + V R +DD+I DD G+GYV+
Sbjct: 6 ALAEIKALRAAGKTRLSTYEVEEEEQLYDTVDEDGYKKIVRSRLDQDDFIVDDNGEGYVD 65
Query: 162 DGREIFDD 169
DGRE +DD
Sbjct: 66 DGREEWDD 73
>gi|294658522|ref|XP_460862.2| DEHA2F11440p [Debaryomyces hansenii CBS767]
gi|202953194|emb|CAG89207.2| DEHA2F11440p [Debaryomyces hansenii CBS767]
Length = 1470
Score = 317 bits (812), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 257/414 (62%), Gaps = 27/414 (6%)
Query: 405 FIKFTMLHSSYIIKIMCE----LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
F+ + ++ ++I E + +L L+ Q+TN+ GN S TL G R+ RNEF+LLH F
Sbjct: 740 FLLMALKENASNVRITAEVAFSIQILSLSKQLTNLAGNAWSHTLSGTRAGRNEFILLHEF 799
Query: 461 HEKSYVLPDKQ--YGKNKKEGEETG------EANKGKGRKKAAYSGGLVLEPKKGFYDKF 512
+Y++PDK+ Y KN ++ +A KK Y GGLV EP+KG + +
Sbjct: 800 KRNNYIVPDKEDKYHKNTNHQQQAKLESNEEDATTATSNKKPKYQGGLVFEPEKGLHKNY 859
Query: 513 IILMDFNSLYPSIIQEYNICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEI 567
I++MDFNSLYPSIIQEYNICFTT+ + + D+ + P+ + G+LP +
Sbjct: 860 ILVMDFNSLYPSIIQEYNICFTTVNRDNYNAAKIDEGDLPDI----PDREAAQGVLPRLL 915
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
LV RR+VK L+K P ++ QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA L
Sbjct: 916 NALVSRRREVKKLLKDPKNTAIERAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAML 975
Query: 628 VTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ 687
VT KGREIL++T+ L E++ V+YGDTDS+MI V+D+ KIG + K + N+ YK
Sbjct: 976 VTNKGREILMDTRQLAESIGLRVVYGDTDSVMIDTGVDDFKEAIKIGEEFKIQVNERYKL 1035
Query: 688 LELDIDGVYKYMLLLKKKKYAALSIS-KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746
LE+DID V+K +LL KKKYAA++ S G+ I E+KG+D+ RR++ QL+ + F
Sbjct: 1036 LEIDIDNVFKRLLLHAKKKYAAMTTSIDRKTGQEIVKLEVKGLDMRRREYCQLSKDMSTF 1095
Query: 747 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
V+ +IL +D + L +++E+++ + + + + + +I +L+K P
Sbjct: 1096 VLEKIL-----SDADPEQALSDVYEYLEDMTRKIKDNEIQVDKFKINTRLSKDP 1144
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 25/196 (12%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
F+MF+LD E ++ LFGK+ ++ N S V V + R++Y LPR +
Sbjct: 332 FKMFWLDYCE----VDNSLLLFGKIQTRDGNLVSGV-VKVNGLCRELYFLPRKHRISNDE 386
Query: 269 --TKEPVSIAQVYSEFDQIATQ-YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
T++ VS V+ E + + Y + K++ KYAF LPG+P EYL+V K
Sbjct: 387 EDTEDEVSALDVHEEVTPLLLEKYGLESIKAKPETMKYAFELPGIPKEGEYLKVLLPYKT 446
Query: 326 P-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE-----FPEAEKFPSRI 375
P +PS+L G+TFSHVFGT + E L+ ++ I GP WLE F E +
Sbjct: 447 PRNRSLIIPSNLEGETFSHVFGTNANIFEALVSQQNIMGPCWLEISNGNFTEIQN----T 502
Query: 376 SWCKYEVQCNQMEKIR 391
S C+ EV + +R
Sbjct: 503 SHCQVEVAVSSPSFVR 518
Score = 42.4 bits (98), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 5/47 (10%)
Query: 126 DENVYEEVSEKEYTERVLKRQE---DDWIDDDGGDGYVEDGREIFDD 169
D+ +Y+EV E+ Y ER KR + DD+I DD G+GYV++G + +DD
Sbjct: 33 DQGIYDEVDEETYRER--KRNQMMNDDFIVDDNGEGYVDNGVDEWDD 77
>gi|451847719|gb|EMD61026.1| hypothetical protein COCSADRAFT_149455 [Cochliobolus sativus ND90Pr]
Length = 1470
Score = 317 bits (811), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 184/432 (42%), Positives = 266/432 (61%), Gaps = 19/432 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++K + +I I ++ +LPL+ +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 749 GLLNYVKHCQADAYFIAAIAIKVQMLPLSKVLTNLAGNSWARTLSGTRAERNEYILLHEF 808
Query: 461 HEKSYVLPDKQYGKNK--KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
+ Y+ PDKQ+GK+K E E +KK + GGLV EP+KG YDKFI++MDF
Sbjct: 809 YRNKYICPDKQWGKSKVKAEEEAAEGEEGADAKKKDKFKGGLVFEPEKGLYDKFILVMDF 868
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPE--HQVDTGILPSEIKKLVESRRQ 576
NSLYPSIIQEYNICFTT+ + SDI+ + +PE D GILP I LV RR+
Sbjct: 869 NSLYPSIIQEYNICFTTV-----ERSDISEDDDKVPEVPSDQDQGILPRLIATLVSRRRE 923
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMK + + D L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 924 VKKLMKAKDATPDQLATWDIKQMALKLTANSMYGCLGYTKSRFYARPLAMLTTYKGREIL 983
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
TK + E VIYGDTDS+MI+ NV++ K+GN+ K E N Y+ LE+DID V+
Sbjct: 984 RKTKEMAEEKALRVIYGDTDSVMINTNVDNIQDAIKLGNEFKKEVNDSYRLLEIDIDNVF 1043
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
+ +LL KKKYAA+++ + +GK I E+KG+D+ RR++ L+ E +++ +L +
Sbjct: 1044 RRILLHAKKKYAAINMVPV-DGKYIEKLEVKGLDMRRREYCALSKETSTELLNFLLSGED 1102
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRL 812
+ ++ IH H++++ + +P I QL K P+ G + Q+ L
Sbjct: 1103 P-----EVVVEKIHNHLRELSKQMREYVIPPRKYTIYTQLGKNPKEYPNGNSMPSVQVAL 1157
Query: 813 SRNRRGRRRRRR 824
+G+ + +
Sbjct: 1158 RLMAKGKHVKAK 1169
Score = 119 bits (299), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 101/177 (57%), Gaps = 9/177 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS----EHL 267
RMF++D E G++ LFGKV +++ ++ SC + + NI RK+Y LPR +
Sbjct: 350 LRMFWIDYTE----LNGSLCLFGKVKDRKSGNYVSCFLKIDNILRKLYFLPREYRQVRGV 405
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E + ++ V E D I +++++ K + +KYAF L +P ++YL++ Y
Sbjct: 406 TTDEEIELSDVSDEVDSIMSKHRVNLHKIKPCTRKYAFELADIPKEADYLKLLYGYDKMP 465
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP-SRISWCKYEVQ 383
L +DL+G+TFSHVFGT TS E +L + I GP WL+ + P + SWCK E Q
Sbjct: 466 LSTDLTGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIDAPDFGPVANASWCKLEAQ 522
Score = 47.4 bits (111), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 121 YEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGREIFDDD 170
YE +E +Y+EV E+ Y + V R EDD++ D G+GYV+DGRE +DDD
Sbjct: 30 YEVAEEEQLYDEVDEEGYKKIVRGRLDEDDFVVGDEGEGYVDDGREEWDDD 80
>gi|385304086|gb|EIF48119.1| dna polymerase alpha catalytic subunit [Dekkera bruxellensis
AWRI1499]
Length = 569
Score = 317 bits (811), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 163/386 (42%), Positives = 237/386 (61%), Gaps = 12/386 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L+ Q+TN+ GN SRTL G R+ RNE++LLH F ++PDK+ + K+ G
Sbjct: 38 IQILSLSKQLTNLAGNAWSRTLGGTRAGRNEYILLHEFTRNGXIVPDKEXXRQKRHGTSD 97
Query: 483 GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ 542
E +KA Y GGLV EP KG ++ +MDFNSLYPSIIQE+NICFTT+ L
Sbjct: 98 NEPATAAAGRKAKYQGGLVFEPVKGLVKNYVTVMDFNSLYPSIIQEFNICFTTVDRSKLT 157
Query: 543 DSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALK 602
+ ++ + P + G+LP + +LV RR+VK L+K P +S+ +QYDI+Q+ALK
Sbjct: 158 EDELPEV----PSPETPRGVLPKLLHELVSRRREVKKLLKDPRISTQERIQYDIKQRALK 213
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC 662
TANSMYGCLG+ NSRF+A+PLA LVT +GREIL++T+ L E+L V+YGDTDS+M+
Sbjct: 214 XTANSMYGCLGYXNSRFYAKPLAMLVTNRGREILMDTRHLAESLGMRVVYGDTDSVMVDT 273
Query: 663 NVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMIC 722
+ K + N YK LE+ ID V+K MLL KKKYAA++ + G
Sbjct: 274 GCDTMKEALKFAEDFRKRVNDRYKLLEIGIDNVFKKMLLHAKKKYAAVNCTINXXGXEST 333
Query: 723 SQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDN 782
S E+KG+D+ RR++ L+ E F++ ++L D ++ L I+ +++ I T L B
Sbjct: 334 SLEVKGLDMKRREYCPLSKEVSTFILEKVLG-----DNDPEEALTAIYGYLEGITTKLXB 388
Query: 783 GFVPLTLLEITKQLTKAP---EGGKV 805
+P+ L+I +L+K P GGK
Sbjct: 389 NXIPMVKLKINTRLSKDPVQYPGGKT 414
>gi|326471235|gb|EGD95244.1| DNA polymerase alpha catalytic subunit [Trichophyton tonsurans CBS
112818]
Length = 1467
Score = 317 bits (811), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 252/405 (62%), Gaps = 13/405 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ +L +LPL +TN+ GN SRTL G R+ERNE++LLH F
Sbjct: 752 GLMNFLSHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEF 811
Query: 461 HEKSYVLPDKQYGKNKKEGEET-GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK K + + EE GE + +KK Y GGLV EP+KG YDK +++MDFN
Sbjct: 812 YRGKYICPDKYGHKTQIKVEENEGEEDGADKKKKEKYKGGLVFEPEKGLYDKHVLVMDFN 871
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ ++D +P+ GILP I LV RR+VK
Sbjct: 872 SLYPSIIQEFNICFTTVDRHASSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVKK 931
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL NT
Sbjct: 932 LMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRNT 991
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E VIYGDTDS+MI+ N + K+GN K N+ YK LE+DID V+K +
Sbjct: 992 KELAETNQLRVIYGDTDSVMINTNTDSVQEALKVGNDFKRLVNQRYKLLEIDIDNVFKRL 1051
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA+++S++ +GK + E+KG+D+ RR++ L+ E ++ +IL
Sbjct: 1052 LLHAKKKYAAINLSEV-DGKYVEHLEVKGLDMKRREFCALSKEVSTKLLHEIL------- 1103
Query: 760 YSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD L IH++++++ + +P+ I +L+K P+
Sbjct: 1104 -SGDDVEVVLNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPD 1147
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/184 (41%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R F+LD E G++ LFGKV K NNS+ S V V NI RK+Y LPR
Sbjct: 352 LRFFWLDYTE----INGSLCLFGKVKNKTNNSYVSAFVKVDNILRKLYFLPREYKYVRGQ 407
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D I ++ K+ K + +KYAF LP +P +EYL++ Y PA
Sbjct: 408 STSEEVDMEDVYGEVDNIMSRSKVEMHKIKPCTRKYAFELPDIPKETEYLKLMYPYTKPA 467
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP +L G+TFSHVFGT T+ E +L + I GP WL+ +A+ + SWCK E Q
Sbjct: 468 LPMELKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTAVNGASWCKLECQVTN 527
Query: 387 MEKI 390
I
Sbjct: 528 PADI 531
Score = 53.5 bits (127), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 106 FQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGGDGYVED 162
+LK L+ G K YE DE++YE+V E+ Y + V KR + DD++ DD G+GY +D
Sbjct: 8 LAELKALRASGQKRLATYEVQEDEDIYEQVDEEGYKKVVRKRLDRDDFVVDDNGEGYADD 67
Query: 163 GREIFDD 169
GRE +DD
Sbjct: 68 GREEWDD 74
>gi|238880835|gb|EEQ44473.1| DNA polymerase alpha catalytic subunit [Candida albicans WO-1]
Length = 1470
Score = 316 bits (810), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/389 (42%), Positives = 246/389 (63%), Gaps = 17/389 (4%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--------YGKNK 476
+L L+ Q+TN+ GN S TL G R+ RNE++LLH F +Y++PDK+ Y +
Sbjct: 760 ILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFKRNNYIVPDKEDKTHKNTSYQQEA 819
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ +A KK Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 820 RVENAEEDATTATSNKKPKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTV 879
Query: 537 P-VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYD 595
R D LPE ++G+LP + LV RR+VK L+K P + QYD
Sbjct: 880 NRDRFNVTHDENKDMPILPERDTESGVLPRLLNTLVSRRREVKKLLKDPKNTPFQKAQYD 939
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDT 655
I+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T+ L E+ + V+YGDT
Sbjct: 940 IKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAESSSLRVVYGDT 999
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAAL--SIS 713
DS+MI + Y KIG Q K + N+ Y+ LE+DID V+K +LL KKKYAA+ SI+
Sbjct: 1000 DSVMIDTGASSYQEAIKIGEQFKVQVNERYRLLEIDIDNVFKRLLLHAKKKYAAMNASIN 1059
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
K +N + + E+KG+D+ RR++ QL+ + FV+++IL +D + L +++++
Sbjct: 1060 KATNEE-TATLEVKGLDMRRREYCQLSKDISTFVLTKIL-----SDSDPETALLEVYDYL 1113
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
++ + N +P+ +I +L+K P+
Sbjct: 1114 DDMKGKIQNNEIPIDKYKINTKLSKDPKS 1142
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 16/192 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR------SE 265
F+MF+ D E ++ LFGK+ KE S V V I R+++ LPR E
Sbjct: 329 FKMFWFDYAE----AENSLLLFGKIMTKEGKLVSGV-VKVDGICRELFFLPREYRIVDDE 383
Query: 266 HLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
K+K+ +I + + Y + + +++ KKYAF L +P +EYL+V
Sbjct: 384 EDKSKKLTAIDVLEEIQPLLLANYNLEELRAKPEVKKYAFELADIPKEAEYLKVLLPFNN 443
Query: 326 PA----LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKY 380
+P+++ G TF HVFGT + E+ +++R I GP WLE + S C+
Sbjct: 444 ETNRNIMPANIEGSTFRHVFGTNANMFESFVMQRNIMGPCWLEIRGGDFDAMQNASHCQV 503
Query: 381 EVQCNQMEKIRS 392
EV ++ +I +
Sbjct: 504 EVVVDRPSQIST 515
>gi|328857126|gb|EGG06244.1| hypothetical protein MELLADRAFT_48531 [Melampsora larici-populina
98AG31]
Length = 1159
Score = 316 bits (809), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 180/407 (44%), Positives = 260/407 (63%), Gaps = 18/407 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ FIK + + + + ++ ++ L L Q+TN+ GN + TL GGR++RNE++LLH FH
Sbjct: 433 LINFIKHSEADTYFQMALVHKVQYLSLTKQLTNLAGNSWNATLFGGRAQRNEYILLHEFH 492
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKG--------RKKAAYSGGLVLEPKKGFYDKFI 513
+ ++ PDK N ++ E +A K + KK Y GGLV EPK+G +DKFI
Sbjct: 493 RQKFICPDK-LSFNDRKAIEKAQAIKSENDGEDGKKNVKKDKYKGGLVFEPKRGLWDKFI 551
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
++MDFNSLYPSIIQEYNI FTTI L + D + E LP GILP I LV
Sbjct: 552 LVMDFNSLYPSIIQEYNIDFTTIDRTTLDEDDPDAMPE-LPSSSTKQGILPRLIATLVNR 610
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RRQVK+LMK + + ++QY+I+Q ALKLTANSMYGCLGF SRF+A+ LAAL T KGR
Sbjct: 611 RRQVKSLMKDRDTPPNKMIQYEIKQLALKLTANSMYGCLGFEGSRFYARSLAALTTYKGR 670
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL NT+ L E+ + +VIYGDTDS+MI+ N D+ + KIG + K N+ Y+ LE+DID
Sbjct: 671 EILTNTRELAESKDLDVIYGDTDSVMINTNAIDFAAAKKIGGEFKKLVNERYRLLEIDID 730
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
V++ MLLL+KKKYAAL I +++ K S E+KG+D+ RR++ +L+ +A ++++ +L
Sbjct: 731 AVFERMLLLQKKKYAALKIDEVTLQK---SVEVKGLDMKRREFCKLSKDASQYILQHVLS 787
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+ ++ +HE++ ++ D+ G L I K+L K P
Sbjct: 788 GD-----PTEIVVEKMHEYLTQLGEDVKEGRKDLEDFIIHKKLGKNP 829
Score = 112 bits (280), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 102/180 (56%), Gaps = 16/180 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
+ F+LD E G +YLFGKV K +++ +CCVIV+ ++R +++LP+ E ++ ++
Sbjct: 34 LKFFWLDYLE----VEGVIYLFGKVLNKLTSTYVTCCVIVEGMERNLFVLPK-ETIRDED 88
Query: 272 PVSIA----QVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCP 326
V + VY + + + +Y I +FK++ +++KY F G+P E+ +V YS P
Sbjct: 89 DVEVKPTEDDVYDDIEDVLQKYGIAEFKAKVVKRKYCFEEKGIPAGEHEWHKVVYSFSKP 148
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE----FPEAEKFPSRISWCKYEV 382
A+P + TF V GT +S E LL+R+I GP WL P K P+ SWC+ EV
Sbjct: 149 AIPLNTKSRTFGKVLGTHSSAFELFLLKRRIMGPCWLNLKGALPNKSKTPA--SWCQLEV 206
>gi|254569452|ref|XP_002491836.1| Catalytic subunit of the DNA polymerase I alpha-primase complex
[Komagataella pastoris GS115]
gi|238031633|emb|CAY69556.1| Catalytic subunit of the DNA polymerase I alpha-primase complex
[Komagataella pastoris GS115]
gi|328351664|emb|CCA38063.1| DNA polymerase alpha subunit A [Komagataella pastoris CBS 7435]
Length = 1442
Score = 316 bits (809), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 172/414 (41%), Positives = 256/414 (61%), Gaps = 25/414 (6%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ------ 471
+I + +L L+ +TN+ GN S TL G R+ RNEF+LLH F + Y++PDK+
Sbjct: 730 EITFRIQILSLSKILTNLAGNAWSHTLGGTRAGRNEFILLHEFRKNGYIVPDKENFYQKH 789
Query: 472 -YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYN 530
+ + + E E K +K + GGLV EP+KG + ++++DFNSLYPSIIQE+N
Sbjct: 790 QQQQLQDQSPEDDETTKISSKKNNKFKGGLVFEPEKGLHRNIVLVLDFNSLYPSIIQEFN 849
Query: 531 ICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 590
ICFTT+ ++S +P G+LP + LV RR+VK L+K +
Sbjct: 850 ICFTTVE----RESGNVDTIPPVPVQNSQQGVLPRLLANLVSRRREVKKLLKDSKIGPVE 905
Query: 591 LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEV 650
Q+DI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT+KGREIL++T+ L E+L +V
Sbjct: 906 KAQFDIKQQALKLTANSMYGCLGYVNSRFYARPLAMLVTSKGREILMDTRQLAESLGLKV 965
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAAL 710
+YGDTDS+MI DY IG +K++ N+ Y LE+DID V+K +LL KKKYAA+
Sbjct: 966 VYGDTDSVMIDSGTIDYQEAIAIGEDLKAKVNERYSLLEIDIDNVFKRILLHAKKKYAAM 1025
Query: 711 SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
++S L NGKM+ E+KG+D+ RR++ QL+ E V+ QIL E D+ L +I+
Sbjct: 1026 NLS-LQNGKMVSQLEVKGLDMRRREYCQLSKEISTHVLEQILGENDS-----DEALSDIY 1079
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAP-----EGGKVCITQIRLSRNRRGR 819
++++ + T + +P+T I +L+K P GG + Q++++ RG+
Sbjct: 1080 QYLETMGTKIRENSIPITKFNINTKLSKDPAQYANAGG---MPQVQVALRLRGQ 1130
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 15/191 (7%)
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH-LKTKEP 272
M++LD E +K + LFGKV + + S V V +DR+IY+LPRS H + P
Sbjct: 313 MYWLDYVEVNHK----LLLFGKVRTS-SGALVSAMVQVGGVDREIYILPRSSHRSDSSAP 367
Query: 273 VSIAQVYSEFDQIATQ-YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP----- 326
V+ E + + Y + +++ + KYAF LPGVP ++YL++ P
Sbjct: 368 CGPMDVHEEITPLLLEKYGLKSIRAKPVTMKYAFELPGVPSEADYLKILLPHDTPLNADL 427
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQC 384
ALPS L G+TF VFG ++ E+ +L++ + GP WLE + F S S C+ E+
Sbjct: 428 ALPSSLEGETFQRVFGGHSALFEDFVLQKDVMGPCWLEISNPD-FDSMRNSSHCRVEMAI 486
Query: 385 NQMEKIRSKQG 395
+ I +G
Sbjct: 487 QSPKDITVYRG 497
>gi|291001623|ref|XP_002683378.1| DNA polymerase alpha catalytic subunit [Naegleria gruberi]
gi|284097007|gb|EFC50634.1| DNA polymerase alpha catalytic subunit [Naegleria gruberi]
Length = 1206
Score = 316 bits (809), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 183/441 (41%), Positives = 262/441 (59%), Gaps = 41/441 (9%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+ +F F + + +M +L+++PL ++TN GN+ +RTL+G RSER E+LLLH F
Sbjct: 484 GVEKFCAFVEHDAQVSMDLMEKLSLIPLTKELTNAAGNLWNRTLIGSRSERIEYLLLHEF 543
Query: 461 HEKSYVLPDKQ--YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
+++ Y+LPDK +GK +G +K YSGGLVL+PK GF+ +++L+DF
Sbjct: 544 YKQKYILPDKSRAFGK--------------RGGRKPKYSGGLVLDPKSGFHHNYVLLLDF 589
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSII E NICF S+ E EH+ D +LP I+ L+ RRQ +
Sbjct: 590 NSLYPSIILENNICF----------SNFLYTEEEREEHKNDKTVLPLVIETLLSRRRQAQ 639
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
M+Q + QYD+RQ+ALKLTANS YGCLGF SRFF + +A +T +GR IL
Sbjct: 640 RQMEQA--TGVQRWQYDMRQRALKLTANSTYGCLGFTFSRFFCKQMAESITVEGRNILTQ 697
Query: 639 TKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK----QLELDID 693
TK L+EN L + VIYGDTDS+MI+ + +YD G +IK E N ++ +LE+DID
Sbjct: 698 TKQLIENSLRFSVIYGDTDSVMIATDTTNYDEALSKGEEIKKEINNSFRKGKGKLEIDID 757
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
G+++ MLLL+KKKY AL +K G +I E+KG+D+VRRDW L+ +++I QIL
Sbjct: 758 GLFRRMLLLRKKKYGALIHTKNKQGTIIPKLELKGLDMVRRDWCDLSRNVSQYIIDQILR 817
Query: 754 EQSYTDY----SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCI-- 807
D + ++ + NIH H+++I D+ N VPL +T LTK PE I
Sbjct: 818 PNEPVDCQTQPTPEEIVANIHTHLREIADDVRNNRVPLEQYILTTALTKEPEQYTDAINH 877
Query: 808 --TQIRLSRNRRGRRRRRRKK 826
Q+ L R G+ R ++
Sbjct: 878 PHVQVALEMRRNGQAVRLHQR 898
Score = 75.1 bits (183), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 19/194 (9%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR--- 263
E K +F+D+ E G + LFGK+ NN ++SCCV ++ + + IY LPR
Sbjct: 84 EGKSKLDFYFVDSCE----LDGRIILFGKIETLPNN-YASCCVRLEKVQKTIYFLPREPI 138
Query: 264 -SEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP---DLSEYLEV 319
++ + ++ I + SE +I+ + FK E+KY F VP ++ V
Sbjct: 139 EAKLVNQEQESRIQEELSEVLKISPEKFGFKFK----ERKYIFEDADVPYNKSITMVKVV 194
Query: 320 RYSAKC--PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRIS 376
+ K P L FS VF TS LE +L+RK+ GPSWL + K ++S
Sbjct: 195 IFDVKNLKPHLQEFRGSKLFSKVFHATTSGLEEFILKRKLMGPSWLSIQKFHVKSSGQLS 254
Query: 377 WCKYEVQCNQMEKI 390
WCK+EV ++ I
Sbjct: 255 WCKFEVSTDEPTNI 268
>gi|68465455|ref|XP_723089.1| likely DNA polymerase I alpha subunit p180 [Candida albicans SC5314]
gi|68465748|ref|XP_722942.1| likely DNA polymerase I alpha subunit p180 [Candida albicans SC5314]
gi|46444950|gb|EAL04221.1| likely DNA polymerase I alpha subunit p180 [Candida albicans SC5314]
gi|46445106|gb|EAL04376.1| likely DNA polymerase I alpha subunit p180 [Candida albicans SC5314]
Length = 1470
Score = 316 bits (809), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 167/389 (42%), Positives = 246/389 (63%), Gaps = 17/389 (4%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--------YGKNK 476
+L L+ Q+TN+ GN S TL G R+ RNE++LLH F +Y++PDK+ Y +
Sbjct: 760 ILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFKRNNYIVPDKEDKTHKNTSYQQEA 819
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ +A KK Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 820 RVENAEEDATTATSNKKPKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTV 879
Query: 537 P-VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYD 595
R D LPE ++G+LP + LV RR+VK L+K P + QYD
Sbjct: 880 NRDRFNITHDENKDMPILPERDTESGVLPRLLNTLVSRRREVKKLLKDPKNTPFQKAQYD 939
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDT 655
I+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T+ L E+ + V+YGDT
Sbjct: 940 IKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAESSSLRVVYGDT 999
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAAL--SIS 713
DS+MI + Y KIG Q K + N+ Y+ LE+DID V+K +LL KKKYAA+ SI+
Sbjct: 1000 DSVMIDTGASSYQEAIKIGEQFKVQVNERYRLLEIDIDNVFKRLLLHAKKKYAAMNASIN 1059
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
K +N + + E+KG+D+ RR++ QL+ + FV+++IL +D + L +++++
Sbjct: 1060 KATNEET-ATLEVKGLDMRRREYCQLSKDISTFVLTKIL-----SDSDPETALLEVYDYL 1113
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
++ + N +P+ +I +L+K P+
Sbjct: 1114 DDMKGKIQNNEIPIDKYKINTKLSKDPKS 1142
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 16/192 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR------SE 265
F+MF+ D E ++ LFGK+ KE S V V I R+++ LPR E
Sbjct: 329 FKMFWFDYAE----AENSLLLFGKIMTKEGKLVSGV-VKVDGICRELFFLPREYRIVDDE 383
Query: 266 HLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
K+K+ +I + + Y + + +++ KKYAF L +P +EYL+V
Sbjct: 384 EDKSKKLTAIDVLEEIQPLLLANYNLEELRAKPEVKKYAFELADIPKEAEYLKVLLPFNN 443
Query: 326 PA----LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKY 380
+P+++ G TF HVFGT + E+ +++R I GP WLE + S C+
Sbjct: 444 ETNRNIMPANIEGSTFRHVFGTNANMFESFIMQRNIMGPCWLEIRGGDFDAMQNASHCQV 503
Query: 381 EVQCNQMEKIRS 392
EV ++ +I +
Sbjct: 504 EVVVDRPSQIST 515
>gi|398405728|ref|XP_003854330.1| hypothetical protein MYCGRDRAFT_99627 [Zymoseptoria tritici IPO323]
gi|339474213|gb|EGP89306.1| hypothetical protein MYCGRDRAFT_99627 [Zymoseptoria tritici IPO323]
Length = 1478
Score = 315 bits (808), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 182/433 (42%), Positives = 268/433 (61%), Gaps = 23/433 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++K + + Y+ + + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 738 GLMNYVKMCEVDTYYVAALALKTQLLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 797
Query: 461 HEKSYVLPDKQYGK---NKK-EGEETGEANKGKGRKKAAYSGG-LVLEPKKGFYDKFIIL 515
+ Y+ PDK +GK NKK E E E +G KK G LV EP+KG YDKFI++
Sbjct: 798 YRNKYICPDKVWGKGATNKKLEDNENVEGEEGADAKKKDKYKGGLVFEPEKGLYDKFILV 857
Query: 516 MDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT---GILPSEIKKLVE 572
MDFNSLYPSIIQEYNICFTTI L + D E +PE DT GILP IK LV
Sbjct: 858 MDFNSLYPSIIQEYNICFTTIERGHLTEED-----EKVPEVPDDTANKGILPRLIKTLVS 912
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
RR+VK LMK + + D +D++Q+ALKLTANSMYGCLG+ SRF+A+PLAAL TAKG
Sbjct: 913 RRREVKKLMKDKSATEDQRKTWDVKQQALKLTANSMYGCLGYTKSRFYARPLAALTTAKG 972
Query: 633 REILLNTKSLVENLN-YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
REIL +TK L E+ + VIYGDTDS+MI+ N ++ K+G + + N+ Y+ LE++
Sbjct: 973 REILQSTKDLAESAHALRVIYGDTDSVMINTNADNVLDALKMGKEFQKSVNERYELLEIE 1032
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
ID +++ +LL KKKYAA+++ + + I ++KG+D+ RR++ QL+ + + ++ +
Sbjct: 1033 IDHIFRRLLLHAKKKYAAMTMVQKDDNTWIEKMDVKGLDMRRREYCQLSKDTSQALLDFL 1092
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCI 807
L + + + IH++++ + + N +P I QL K P+ GG +
Sbjct: 1093 LSGE-----EPEKVVAQIHDYLRTLSEKMRNNEIPKHKYTIYTQLGKNPKDYPNGGSMPS 1147
Query: 808 TQIRLSRNRRGRR 820
Q+ L R +G++
Sbjct: 1148 VQVALKRLAKGKQ 1160
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 9/182 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ R F+ D E G++ LFGKV +++ S S V V NI RK+Y LPR
Sbjct: 335 EDDGSLRFFWTDYTE----VNGSLCLFGKVKNRKDGSFVSAFVKVDNILRKLYFLPRENR 390
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
+ T E + VY E D I ++ K+ K ++ +KYAF LPG+P ++YL++ Y
Sbjct: 391 YRRGRETDEEIDFKDVYEEVDSIMSRQKVTMHKIKQSSRKYAFELPGIPREADYLKLLYP 450
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYE 381
PAL DL+G+TFSHVFGT T+ E ++ + I GP WL+ A+ + SWCK E
Sbjct: 451 YDKPALSMDLTGETFSHVFGTNTNLFEQFVMWKNIMGPCWLKIENADFNAVNNASWCKLE 510
Query: 382 VQ 383
+Q
Sbjct: 511 LQ 512
Score = 45.1 bits (105), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 11/98 (11%)
Query: 100 TNKFAAFQKLKDLKGQG--VKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGG 156
+K A ++++ L+ G Y+ E++YE V ++ Y + V R ++DD++ DD G
Sbjct: 2 ASKADALKRIRALRAAGKTAFDDYKVEEAESIYETVDDEGYKKVVRSRLEQDDFVVDDNG 61
Query: 157 DGYVEDGRE--------IFDDDIEDVPQKKEKHDKRKK 186
+GY +DGRE ++D + ED K K KRK+
Sbjct: 62 EGYADDGREDWQDERQPMYDSESEDDRPKNSKAAKRKR 99
>gi|315041206|ref|XP_003169980.1| DNA polymerase alpha catalytic subunit [Arthroderma gypseum CBS
118893]
gi|311345942|gb|EFR05145.1| DNA polymerase alpha catalytic subunit [Arthroderma gypseum CBS
118893]
Length = 1465
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 175/405 (43%), Positives = 253/405 (62%), Gaps = 13/405 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ L +LPL +TN+ GN SRTL G R+ERNE++LLH F
Sbjct: 750 GLMNFLSHCEADTYFIAALVLRLQMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEF 809
Query: 461 HEKSYVLPDKQYGKNKKEGEET-GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK K + + EE G+ + +KK Y GGLV EP+KG YDK +++MDFN
Sbjct: 810 YRGKYICPDKYGHKTQIKVEENEGDEDGADKKKKEKYKGGLVFEPEKGLYDKHVLVMDFN 869
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ ++D +P+ GILP I LV RR+VK
Sbjct: 870 SLYPSIIQEFNICFTTVDRHASSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVKK 929
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL NT
Sbjct: 930 LMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRNT 989
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E VIYGDTDS+MI+ N ++ K+GN+ K N+ Y+ LE+DID V+K +
Sbjct: 990 KELAETNQLRVIYGDTDSVMINTNTDNVQEALKVGNEFKRLVNQRYRLLEIDIDNVFKRL 1049
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA+++S++ +GK + E+KG+D+ RR++ L+ E ++ +IL
Sbjct: 1050 LLHAKKKYAAINLSEV-DGKYVEHLEVKGLDMKRREFCALSKEVSTKLLHEIL------- 1101
Query: 760 YSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD L IH++++++ + +P+ I +L+K P+
Sbjct: 1102 -SGDDVEVVLNKIHDYLRELTQKMHEYTIPVQKYVIYTKLSKRPD 1145
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 123/243 (50%), Gaps = 20/243 (8%)
Query: 164 REIFDDDIEDVPQKK--EKHDKRKKNK-----NIQNPNAKD----DSLPLATDHENKKVF 212
+EI+DD + P + E + N N+ N + D L E
Sbjct: 291 KEIYDDPMASSPARATTEMINPSSWNDVTSKLNVLNSSVTDMQRFGKLTCQEAVEEDGSL 350
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR----SEHLK 268
R F+LD E G++ LFGKV K NNS+ S V V NI RK+Y LPR +
Sbjct: 351 RFFWLDYTE----INGSLCLFGKVKNKTNNSYVSAFVKVDNILRKLYFLPREYKYTRGQT 406
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPAL 328
T E V + VY E D + ++ K+ K + +KYAF LPG+P +EYL++ Y PAL
Sbjct: 407 TSEEVDMEDVYGEVDTLMSRSKVEMHKIKPCTRKYAFELPGIPKEAEYLKLMYPYTKPAL 466
Query: 329 PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQM 387
P DL G+TFSHVFGT T+ E +L + I GP WL+ +A+ + SWCK E Q
Sbjct: 467 PMDLKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTAVNGASWCKLECQVTNP 526
Query: 388 EKI 390
+I
Sbjct: 527 AEI 529
Score = 56.2 bits (134), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 64/110 (58%), Gaps = 19/110 (17%)
Query: 99 KTNKFAAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDG 155
+ NK A +LK L+ G K YE DE++YE+V E+ Y + V KR + DD++ DD
Sbjct: 4 RANKLA---ELKALRASGKKRLATYEVEEDEDIYEQVDEEGYKKVVRKRLDRDDFVVDDN 60
Query: 156 GDGYVEDGREIFDD--------DIEDVP-----QKKEKHDKRKKNKNIQN 192
G+GY +DGRE +DD D +D+P K+++ ++ K+ + I+N
Sbjct: 61 GEGYADDGREEWDDTRPAASDSDSDDLPVRGKAAKRKREEESKRKEKIEN 110
>gi|281203060|gb|EFA77261.1| DNA polymerase alpha catalytic subunit [Polysphondylium pallidum
PN500]
Length = 1518
Score = 315 bits (808), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 184/400 (46%), Positives = 261/400 (65%), Gaps = 38/400 (9%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
I +M +L+ LPL Q+TN+ GN+ +R+L G R+ER E+LLLH FH + +VLPDK + K+
Sbjct: 826 IFLLMFKLSFLPLTKQLTNLAGNLWNRSLAGNRAERIEYLLLHNFHAEKFVLPDKIFSKD 885
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K G+KKAAYSGGLVL+PK GFYD++++L+DFNSLYPSIIQEYN+CFTT
Sbjct: 886 K-----------DFGKKKAAYSGGLVLDPKAGFYDRYVVLLDFNSLYPSIIQEYNVCFTT 934
Query: 536 IPVRMLQDSDITTLCEY----LPEHQVDTGILPSEIKKLVESRRQVK-ALMKQPNLSSDL 590
I ++ +D + + Y P V GILP+ +++LV RR+VK +L + N +L
Sbjct: 935 IERKLREDGNRSINGGYESAQPPASSVSRGILPTVLQRLVAKRREVKRSLASESN--EEL 992
Query: 591 LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEV 650
Q DI+Q+A+KL ANSMYGCLGF +SRF+A PLA LVT KGRE L + + +NY+V
Sbjct: 993 KQQLDIKQQAIKLVANSMYGCLGFKSSRFYALPLAELVTRKGRENLQKSSEIAGRMNYDV 1052
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK--QLELDIDGVYKYMLLLKKKKYA 708
+YGDTDSLMI+ V+ Y+ IG +IK + N+ Y+ +E+++DG++K +LLLKKKKYA
Sbjct: 1053 VYGDTDSLMINTGVSTYNEAEAIGFEIKKKVNEQYRGSVMEIELDGIFKRLLLLKKKKYA 1112
Query: 709 ALSISKLSNGKMICSQEI--KGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 766
AL +K + +CS I KG+D+VRRDW + E G ++S I+ S DD +
Sbjct: 1113 ALIETKKAG---VCSTFIQNKGIDIVRRDWCGVTKEIGNHLLSLIM--------SPDDNV 1161
Query: 767 QN-----IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
N I E+++ + + + VP+ ITK L+ APE
Sbjct: 1162 SNNLQFEIKEYVESMAQKMRSFEVPVENFVITKTLSSAPE 1201
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 111/222 (50%), Gaps = 27/222 (12%)
Query: 188 KNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHS-- 245
K I+N KD S T K + ++L A E+ G +YLFGKV ENN +
Sbjct: 384 KLIENLIVKDMSKITTT---TKNELQFYYLTASEE---NNGNIYLFGKVRSVENNVETFK 437
Query: 246 SCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQIATQYKILDFKSRKI 299
SCC I++ + R ++LLPR L TKEP + + ++ ++ KI + + +
Sbjct: 438 SCCAIIEGMKRNVFLLPRDYILDDNGEPTTKEP-NEQLIRADVTKLMNSQKITGWTLKPV 496
Query: 300 EKKYAF-------NLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLL 352
E+ F N P P + ++ Y A AL ++L+G TF V+G +S LE L
Sbjct: 497 ERSICFDYKVEGKNQP--PGKYKLWKLCYPAAFSALKNELTGSTFQAVYGVTSSPLELFL 554
Query: 353 LERKIKGPSWL---EFPEAEKFPSRISWCKYEVQCNQMEKIR 391
L++KI GPSWL +F A + SWC+ E + + +K++
Sbjct: 555 LKKKIMGPSWLSLADFKPALSMSEKTSWCRLEGKVDSYKKVK 596
>gi|393910144|gb|EFO26754.2| hypothetical protein LOAG_01730 [Loa loa]
Length = 1444
Score = 315 bits (807), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 179/417 (42%), Positives = 257/417 (61%), Gaps = 47/417 (11%)
Query: 400 IGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHA 459
+ ++ FI + + + + I+ ELN LPL IQIT + G VLSRT++GGR+ERNE+LLLHA
Sbjct: 746 VQLIRFINNSWMDAWLSLAIIAELNALPLFIQITKIVGGVLSRTMLGGRAERNEYLLLHA 805
Query: 460 FHEKSYVLPDKQYGKNKKEGEETG------------EANKGKGRKKAAYSGGLVLEPKKG 507
F++ YV P+K Y + K+ +++G + K + +K Y GGLVL+PK G
Sbjct: 806 FNKAGYVPPNK-YQPDSKKRKQSGLKDTKSVDDDLEDYKKVQHNRKGQYVGGLVLDPKIG 864
Query: 508 FYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEI 567
YD F++L+DFNSLYPSIIQEYNICFTT+ + +++ L V+ GILP EI
Sbjct: 865 LYDTFVLLLDFNSLYPSIIQEYNICFTTVDMSKKDKNEMPEL-----PSDVNEGILPREI 919
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
+ LVE RR VK +MK L+ QYDIRQ LKLTANSMYGCLGF SRF+A+PLAAL
Sbjct: 920 RSLVERRRDVKRMMKSEKLTQQQRQQYDIRQMGLKLTANSMYGCLGFQQSRFYAKPLAAL 979
Query: 628 VTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNV---NDYDSVFKIGNQIKSECNKL 684
+TA+GREIL++TK L+E Y VIYGDTDS+MI+ ++ V K+GN++
Sbjct: 980 ITAQGREILMHTKDLIEKNGYSVIYGDTDSVMINTGFSERSELQRVKKLGNEV------- 1032
Query: 685 YKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAG 744
+++ +K+KYA L++ N + +EIKG+D+VRRD+S + + G
Sbjct: 1033 --------------IVVTEKEKYAGLAVDL--NDERKTKREIKGLDIVRRDYSFIVKQIG 1076
Query: 745 KFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
++ IL QS D+ + IH ++K+ D+ + ++L +I KQLT+ P
Sbjct: 1077 NEILDIILSVQSQNR---DEIIGQIHSRLRKLGKDIAQELLEISLFQIFKQLTRNPH 1130
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 113/192 (58%), Gaps = 7/192 (3%)
Query: 204 TDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR 263
T+ + + R ++LDAFED K PGTVYLFG++ + SCCVIV+NI R+++ LPR
Sbjct: 346 TNSKGESTLRFYWLDAFEDPIKIPGTVYLFGRLI--NDGLSESCCVIVKNIWRQVFFLPR 403
Query: 264 SEHLKTK---EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVR 320
+ L + + V + QV E +I + K R EKK+A+N VP ++ LEV
Sbjct: 404 EKLLINEVQTDEVDLTQVNEEVQKILRSMGVKVVKCRPCEKKFAYNDGVVPRSAQVLEVH 463
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
YS P L DLSG+TFSHVF T + +E LL+E +KGPSW+E + ++S+ K+
Sbjct: 464 YSFNDPRLSVDLSGETFSHVFNTTANAMERLLIETGMKGPSWVEISGCDVSSLQVSYVKH 523
Query: 381 E--VQCNQMEKI 390
E V QM+ I
Sbjct: 524 EFVVDMKQMKSI 535
>gi|260941119|ref|XP_002614726.1| hypothetical protein CLUG_05504 [Clavispora lusitaniae ATCC 42720]
gi|238851912|gb|EEQ41376.1| hypothetical protein CLUG_05504 [Clavispora lusitaniae ATCC 42720]
Length = 1431
Score = 315 bits (807), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 191/512 (37%), Positives = 284/512 (55%), Gaps = 46/512 (8%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPE---AEKFPSRISWC---KYEVQCNQMEKIRS-- 392
FG ++F NLL+ +G + P SW Y V C+Q
Sbjct: 633 FGKSSAFSNNLLIREIFQGRLLCDIANELGQSLTPKCQSWDLSEMYNVVCHQNHPALEIN 692
Query: 393 -------KQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLM 445
+ +L+ + E + ++ + +I L +L L+ Q+TN+ GN S TL
Sbjct: 693 FQNPRYMEDASFWLMPLKENVSQVLISA----QISFALQILSLSKQLTNLAGNAWSHTLS 748
Query: 446 GGRSERNEFLLLHAFHEKSYVLPDKQ--YGKNKKEGEET------GEANKGKGRKKAAYS 497
G R+ RNEF+LLH F +Y++PDK+ + KN ++ +A KK Y
Sbjct: 749 GTRAGRNEFILLHEFRRNNYIVPDKEGKFHKNTSHQQDARIEATEDDATTVTSNKKPKYQ 808
Query: 498 GGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEY----- 552
GGLV EP+KG + +I++MDFNSLYPSIIQE+NICFTT+ +D+ TT E
Sbjct: 809 GGLVFEPEKGLHKNYILVMDFNSLYPSIIQEFNICFTTVE----RDAYNTTHDEERDLPE 864
Query: 553 LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 612
+PE D G+LP + LV RR+VK L+K P +S+ QYDI+Q+ALKLTANSMYGCL
Sbjct: 865 IPERDSDQGVLPRLLNTLVSRRREVKKLLKDPKISAAERAQYDIKQQALKLTANSMYGCL 924
Query: 613 GFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFK 672
G+ NSRF+A+PLA LVT KGREIL++T+ L E++ V+YGDTDS+MI K
Sbjct: 925 GYVNSRFYAKPLAMLVTNKGREILMDTRQLAESIGLRVVYGDTDSVMIDTGATSMAEALK 984
Query: 673 IGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS-KLSNGKMICSQEIKGVDV 731
IG + K + N+ YK LE+D D V+K +LL KKKYAA++++ GK I S E+KG+D+
Sbjct: 985 IGEEFKVQVNERYKLLEIDTDNVFKRLLLHAKKKYAAMNVTLDRKTGKEITSLEVKGLDM 1044
Query: 732 VRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 791
RR++ L+ E FV+ ++L +D ++ L ++ +++ + P+
Sbjct: 1045 RRREYCSLSKEISTFVLEKLL-----SDIDPEEALSQVYGYLETTSAKIRANEFPVDKYS 1099
Query: 792 ITKQLTK----APEGGKVCITQIRLSRNRRGR 819
I +L+K P G + Q+ L ++G+
Sbjct: 1100 INTRLSKDPTSYPNGKTMPPVQVALRLRKQGK 1131
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 95/186 (51%), Gaps = 19/186 (10%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
RMF+LD E G++ LFGKV E S S V V ++ R++Y+LPR
Sbjct: 311 LRMFWLDYAE----ADGSLLLFGKVLTPEG-SLVSAMVQVHDMCRELYVLPRDN------ 359
Query: 272 PVSIAQVYSEFDQIAT-QYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC----- 325
VS V++E I Q+ + +++ +KYAF LP VP +EYL+V K
Sbjct: 360 -VSPMDVHAELVPILMEQFGLERLRAKPETRKYAFELPDVPKEAEYLKVLLPFKTKKNQH 418
Query: 326 PALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP-SRISWCKYEVQC 384
+PS+L G+TF +FGT T+ E+ + +R I GP WL+ + P S C++E
Sbjct: 419 VVMPSELEGETFRRIFGTNTNVFESFVTQRNIMGPCWLDIRTSGCSPLQNASHCQFEAAI 478
Query: 385 NQMEKI 390
+ E I
Sbjct: 479 SSPECI 484
>gi|303315657|ref|XP_003067833.1| DNA polymerase alpha catalytic subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240107509|gb|EER25688.1| DNA polymerase alpha catalytic subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 1463
Score = 315 bits (807), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 175/405 (43%), Positives = 263/405 (64%), Gaps = 14/405 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ +I + +I ++ +L +L L +TN+ GN +RTLMG R+ERNE++LLH F
Sbjct: 749 GLMNYINHAEADTYFIAALVLKLQMLSLTKVLTNLAGNSWARTLMGTRAERNEYILLHEF 808
Query: 461 HEKSYVLPDKQYGKNKKEGEET-GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK +GK++ + EE GE + G +KK Y GGLV EP+KG YDK++++MDFN
Sbjct: 809 YRNKYICPDKYFGKSQPKMEEYEGEDDGGDKKKKDKYKGGLVFEPEKGLYDKYVLVMDFN 868
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQEYNICFTT+ ++ +++ +P Q + GILP I LV RR+VK
Sbjct: 869 SLYPSIIQEYNICFTTVNRELVSENENEEKVPEVPADQ-EQGILPRLISTLVSRRREVKK 927
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL NT
Sbjct: 928 LMKNKRATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILQNT 987
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E VIYGDTDS+MI+ NV++ + K+GN+ K N YK LE+D+D V++ +
Sbjct: 988 KELAEKNQLRVIYGDTDSVMINTNVDNMEEALKVGNEFKRLVNDSYKLLEIDVDNVFRRL 1047
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++++IL
Sbjct: 1048 LLHAKKKYAAINMTEV-DGKYVDHLEVKGLDMKRREYCTLSKEVSSKLLTEIL------- 1099
Query: 760 YSLDDR---LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD L ++++++++ + +P+ I +L+K P+
Sbjct: 1100 -SGDDTEVVLGKVYDYLRELTQKMKEFTIPVQKYVIFTKLSKRPD 1143
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 104/191 (54%), Gaps = 9/191 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E R F+LD E G++ LFGKV K ++ S V + NI RK+Y LPR
Sbjct: 345 ETDGSLRFFWLDYTE----VNGSLCLFGKVKDKRSSRFVSAFVKIDNILRKLYFLPREYR 400
Query: 267 L----KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
L T + + + V +E D++ T+ ++ K + +KYAF LP +P ++YL++ Y
Sbjct: 401 LHHGQNTDDEIDMEDVSNEVDELMTKLRVNVHKIKPCTRKYAFELPNIPKKAKYLKLMYP 460
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYE 381
P LP D+ G+TFSHVFGT T+ E +L + I GP WL+ +A+ S SWCK E
Sbjct: 461 YDKPVLPIDVKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTAVSGASWCKLE 520
Query: 382 VQCNQMEKIRS 392
Q +Q I S
Sbjct: 521 CQVSQPALISS 531
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGGDGYV 160
A +L+ L+ G K YE + ++YEEV E+ Y V +R + DD++ DD G+GY
Sbjct: 6 AKLAELRALRASGKKRLATYEVEEEGDIYEEVDEEGYKNVVRQRLDRDDFVVDDNGEGYA 65
Query: 161 EDGREIFDD 169
+DGRE +DD
Sbjct: 66 DDGREEWDD 74
>gi|320034062|gb|EFW16008.1| DNA polymerase alpha catalytic subunit [Coccidioides posadasii str.
Silveira]
Length = 1449
Score = 315 bits (806), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 175/405 (43%), Positives = 263/405 (64%), Gaps = 14/405 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ +I + +I ++ +L +L L +TN+ GN +RTLMG R+ERNE++LLH F
Sbjct: 735 GLMNYINHAEADTYFIAALVLKLQMLSLTKVLTNLAGNSWARTLMGTRAERNEYILLHEF 794
Query: 461 HEKSYVLPDKQYGKNKKEGEET-GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK +GK++ + EE GE + G +KK Y GGLV EP+KG YDK++++MDFN
Sbjct: 795 YRNKYICPDKYFGKSQPKMEEYEGEDDGGDKKKKDKYKGGLVFEPEKGLYDKYVLVMDFN 854
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQEYNICFTT+ ++ +++ +P Q + GILP I LV RR+VK
Sbjct: 855 SLYPSIIQEYNICFTTVNRELVSENENEEKVPEVPADQ-EQGILPRLISTLVSRRREVKK 913
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL NT
Sbjct: 914 LMKNKRATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILQNT 973
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E VIYGDTDS+MI+ NV++ + K+GN+ K N YK LE+D+D V++ +
Sbjct: 974 KELAEKNQLRVIYGDTDSVMINTNVDNMEEALKVGNEFKRLVNDSYKLLEIDVDNVFRRL 1033
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++++IL
Sbjct: 1034 LLHAKKKYAAINMTEV-DGKYVDHLEVKGLDMKRREYCTLSKEVSSKLLTEIL------- 1085
Query: 760 YSLDDR---LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD L ++++++++ + +P+ I +L+K P+
Sbjct: 1086 -SGDDTEVVLGKVYDYLRELTQKMKEFTIPVQKYVIFTKLSKRPD 1129
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 104/191 (54%), Gaps = 9/191 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E R F+LD E G++ LFGKV K ++ S V + NI RK+Y LPR
Sbjct: 331 ETDGSLRFFWLDYTE----VNGSLCLFGKVKDKRSSRFVSAFVKIDNILRKLYFLPREYR 386
Query: 267 L----KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
L T + + + V +E D++ T+ ++ K + +KYAF LP +P ++YL++ Y
Sbjct: 387 LHHGQNTDDEIDMEDVSNEVDELMTKLRVNVHKIKPCTRKYAFELPNIPKKAKYLKLMYP 446
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYE 381
P LP D+ G+TFSHVFGT T+ E +L + I GP WL+ +A+ S SWCK E
Sbjct: 447 YDKPVLPIDVKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTAVSGASWCKLE 506
Query: 382 VQCNQMEKIRS 392
Q +Q I S
Sbjct: 507 CQVSQPALISS 517
>gi|354545340|emb|CCE42068.1| hypothetical protein CPAR2_806170 [Candida parapsilosis]
Length = 1454
Score = 315 bits (806), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 171/405 (42%), Positives = 256/405 (63%), Gaps = 33/405 (8%)
Query: 417 IKIMCEL----NVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY 472
+KI E+ +L L+ Q+TN+ GN S TL G R+ RNE++LLH F +Y++PDK+
Sbjct: 730 VKIASEVAFATQILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFRRNNYIVPDKED 789
Query: 473 GKNK----------KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
+K + EE + KK Y GGLV EP+KG + +I++MDFNSLY
Sbjct: 790 STHKNTSFQQEAQLENAEE--DVQTATSNKKPKYQGGLVFEPEKGLHKNYILVMDFNSLY 847
Query: 523 PSIIQEYNICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
PSIIQEYNICFTT+ +D D+ +P++ + G+LP + LV RR+V
Sbjct: 848 PSIIQEYNICFTTVDRDRFNTTHNEDKDM----PLIPDNDSERGVLPRLLNSLVTRRREV 903
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K L+K P + QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+
Sbjct: 904 KKLLKDPKNTPFQKAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILM 963
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+T+ L E+ + V+YGDTDS+MI Y K+G++ K + N+ YK LE+DID V+K
Sbjct: 964 DTRQLAESSSLRVVYGDTDSVMIDTGAQTYKDAIKVGDEFKVQVNERYKMLEIDIDNVFK 1023
Query: 698 YMLLLKKKKYAAL--SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
+LL KKKYAA+ SI+K++ G+ + + E+KG+D+ RR++ QL+ + FV+ +IL
Sbjct: 1024 RLLLHAKKKYAAMNVSINKVT-GEEVTTLEVKGLDMRRREYCQLSKDISTFVLMKIL--- 1079
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+D ++ LQ+++ ++++R + +P+ +I +L+K P
Sbjct: 1080 --SDADPEEALQDVYTFLEEMRDKILGNEMPVDRFKINTKLSKDP 1122
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 93/186 (50%), Gaps = 12/186 (6%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT-K 270
FRMF++D E ++ LFGK+ K+ +S V + + R++Y+LP+ + +
Sbjct: 315 FRMFWMDYAE----VENSLLLFGKIQTKDG-KLASGVVQINGLCRELYILPKEKQSNSGN 369
Query: 271 EPVSIAQVYSEFDQIATQ-YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP--- 326
+ S V E I + YK+ +++ KKYAF L +P +EYL+V
Sbjct: 370 QRFSTDDVLDEITPIFMENYKLESLRAKPETKKYAFELAYIPKEAEYLKVLLPYNTVTNR 429
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSR-ISWCKYEVQC 384
LP+D G+TFSH+FGT + E+ + +R I GP WLE + R S C+ EV
Sbjct: 430 KVLPADTEGETFSHIFGTNANMFESFVTQRGIMGPCWLEIQGGDFDAIRNSSHCQIEVAI 489
Query: 385 NQMEKI 390
KI
Sbjct: 490 ASPGKI 495
>gi|134056299|emb|CAK37532.1| unnamed protein product [Aspergillus niger]
Length = 1464
Score = 314 bits (805), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 250/404 (61%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 747 GLMNFVNHCDADTYFIAALVLRLQMLPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 806
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYS---GGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K K E+ E + + K GGLV EP+KG YDKFI++MD
Sbjct: 807 HRNKYICPDKYSSKLLKAEEKMQEGDDDESADKKKKDKYKGGLVFEPEKGLYDKFILVMD 866
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ D+D +P + GILP I LV RR+V
Sbjct: 867 FNSLYPSIIQEYNICFTTVERTATADNDKEEKVPEVPTSDQEQGILPKLIATLVGRRREV 926
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 927 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 986
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G++ K N+ Y+ LE+DID V++
Sbjct: 987 STKELAESKQLRVIYGDTDSVMINTNMDTISDALKVGDEFKKSVNERYRLLEIDIDNVFR 1046
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + +++++L +
Sbjct: 1047 RLLLHAKKKYAAINMTEV-DGKYVDKLEVKGLDMKRREYCSLSKEVSQKLLNEVLSGEDQ 1105
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L +H++++++ + VP+ I +L+K PE
Sbjct: 1106 -----EVVLNRVHDYLRELAEKMREFSVPVQKYVIYTKLSKRPE 1144
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 9/177 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
RMF+LD F ++ G++ LFGKV K+N S++S V V NI RK+Y LPR K
Sbjct: 347 LRMFWLD-FTEVN---GSLCLFGKVKNKQNGSYASAFVKVDNILRKLYFLPREYRHKNGR 402
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D + ++ ++ K + +KYAF LPGVP +EYL++ Y
Sbjct: 403 ETDEEVDMEDVYHEVDGMMSRLRVGMHKMKPCTRKYAFELPGVPKETEYLKLFYPYDKSP 462
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQ 383
LP D+ G+TFSHVFGT TS E +L + I GP WL+ EA+ + SWCK+E Q
Sbjct: 463 LPMDVKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADFTAVNNASWCKFECQ 519
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE ++YEEV ++ Y + + R +DD++ DD G+GY
Sbjct: 6 AKLAELRALRAAGKKRLSTYEVEEQGDIYEEVDDEGYKKIIRNRLDQDDFVVDDNGEGYA 65
Query: 161 EDGREIFDDDIED 173
+DGRE++++ D
Sbjct: 66 DDGREVWNERTAD 78
>gi|317026709|ref|XP_001399392.2| DNA polymerase alpha catalytic subunit [Aspergillus niger CBS 513.88]
Length = 1444
Score = 314 bits (805), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 250/404 (61%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 747 GLMNFVNHCDADTYFIAALVLRLQMLPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 806
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYS---GGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K K E+ E + + K GGLV EP+KG YDKFI++MD
Sbjct: 807 HRNKYICPDKYSSKLLKAEEKMQEGDDDESADKKKKDKYKGGLVFEPEKGLYDKFILVMD 866
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ D+D +P + GILP I LV RR+V
Sbjct: 867 FNSLYPSIIQEYNICFTTVERTATADNDKEEKVPEVPTSDQEQGILPKLIATLVGRRREV 926
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 927 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 986
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G++ K N+ Y+ LE+DID V++
Sbjct: 987 STKELAESKQLRVIYGDTDSVMINTNMDTISDALKVGDEFKKSVNERYRLLEIDIDNVFR 1046
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + +++++L +
Sbjct: 1047 RLLLHAKKKYAAINMTEV-DGKYVDKLEVKGLDMKRREYCSLSKEVSQKLLNEVLSGEDQ 1105
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L +H++++++ + VP+ I +L+K PE
Sbjct: 1106 -----EVVLNRVHDYLRELAEKMREFSVPVQKYVIYTKLSKRPE 1144
Score = 136 bits (343), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 77/177 (43%), Positives = 105/177 (59%), Gaps = 9/177 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
RMF+LD F ++ G++ LFGKV K+N S++S V V NI RK+Y LPR K
Sbjct: 347 LRMFWLD-FTEVN---GSLCLFGKVKNKQNGSYASAFVKVDNILRKLYFLPREYRHKNGR 402
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D + ++ ++ K + +KYAF LPGVP +EYL++ Y
Sbjct: 403 ETDEEVDMEDVYHEVDGMMSRLRVGMHKMKPCTRKYAFELPGVPKETEYLKLFYPYDKSP 462
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQ 383
LP D+ G+TFSHVFGT TS E +L + I GP WL+ EA+ + SWCK+E Q
Sbjct: 463 LPMDVKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADFTAVNNASWCKFECQ 519
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE ++YEEV ++ Y + + R +DD++ DD G+GY
Sbjct: 6 AKLAELRALRAAGKKRLSTYEVEEQGDIYEEVDDEGYKKIIRNRLDQDDFVVDDNGEGYA 65
Query: 161 EDGREIFDDDIED 173
+DGRE++++ D
Sbjct: 66 DDGREVWNERTAD 78
>gi|303278858|ref|XP_003058722.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459882|gb|EEH57177.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1439
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 198/465 (42%), Positives = 273/465 (58%), Gaps = 36/465 (7%)
Query: 367 EAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYL-------IGIVEFIKFTMLHSSYIIKI 419
A F +S+ + NQ++ R++ + G++ K T + + +
Sbjct: 615 SARDFVKEVSYTLSSLASNQLKMTRTEIASTEIPGKFSSAAGLLSLTKATEADAWLSLGL 674
Query: 420 MCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEG 479
M L+VLPL Q++N+ GN+ ++TL R+ R E LLLH FH + Y++PD+ K +K G
Sbjct: 675 MFHLSVLPLTRQLSNIAGNLWAKTLQHTRATRVEHLLLHEFHARKYLMPDRLSAKERKFG 734
Query: 480 ------------EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527
+ GK + +Y+GGLVLEPKKG YDKF++++DFNSLYPSIIQ
Sbjct: 735 RGGGGGDDGDGEGDGEGVKAGKKKGGPSYAGGLVLEPKKGLYDKFVLMLDFNSLYPSIIQ 794
Query: 528 EYNICFTTI--PVRMLQDSDITTLCEYLPEHQV------DTGILPSEIKKLVESRRQVKA 579
EYNICFTT+ P D LPE ++ +LP I+KLV+ RR+VK
Sbjct: 795 EYNICFTTVARPKADPNDPAGVAPAPQLPEPCAGGPGGPNSAVLPQVIRKLVQRRREVKN 854
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
++K ++ Q DIRQ+ALKLTANSMYGCLGF SRF+A+PLA LVT +GREIL +T
Sbjct: 855 MIKTEK-NAARRQQLDIRQQALKLTANSMYGCLGFAASRFYAKPLAELVTLQGREILQST 913
Query: 640 KSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
L + L +VIYGDTDS+MI+ + V IG +K E NK YK LE+++DG++K
Sbjct: 914 VDLAQGTLGMDVIYGDTDSIMINTKSTNLQEVSAIGAALKKEVNKRYKLLEIEMDGIFKS 973
Query: 699 MLLLKKKKYAALSISKLSNGK--MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
MLLLKKKKYAAL + ++G E KG+D+VRRDWS LA G + IL +
Sbjct: 974 MLLLKKKKYAALMVKPAADGSGGFTTVMEQKGLDIVRRDWSPLAKRQGNHALELILSGRP 1033
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+D +++IHE ++K R DL NG V + ITKQLTK PE
Sbjct: 1034 A-----EDVVEDIHESLRKCREDLVNGVVTMDQFIITKQLTKRPE 1073
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 99/227 (43%), Gaps = 44/227 (19%)
Query: 195 AKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSC---CVIV 251
A D SLPL D F LDA EDI PGTV+LFGKV V + C C +V
Sbjct: 190 AADGSLPLDPD----ATLPFFILDAHEDI-SVPGTVFLFGKVPVNAGEVNGECVSACAVV 244
Query: 252 QNIDRKIYLLPRSEHLKTKE-PVS--------------------------------IAQV 278
N+ R + +P E E +S A V
Sbjct: 245 PNMQRCAFAVPTPETFADPENEISDLEDAAAAAAAGDDAAAAKKAKGALLRCLQGRCADV 304
Query: 279 YSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGDTF 337
+E ++ I F + +++ Y F +P S+Y ++VR+ A ALP D+ G F
Sbjct: 305 KNELREMLLARGIEQFTMKPVKRSYCFEKDDIPRGSQYVIKVRFPATYAALPGDVRGAHF 364
Query: 338 SHVFGTKTSFLENLLLERKIKGPSWLEFPEAE--KFPSRISWCKYEV 382
+ GT+T LE+L+++ +I GPSW+ A ++ S CK EV
Sbjct: 365 ITMLGTQTPMLEHLMIKSRIMGPSWIALHGANVVDVSAQRSHCKLEV 411
>gi|119178034|ref|XP_001240726.1| hypothetical protein CIMG_07889 [Coccidioides immitis RS]
gi|392867311|gb|EAS29457.2| DNA polymerase (pol2) [Coccidioides immitis RS]
Length = 1463
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/405 (42%), Positives = 263/405 (64%), Gaps = 14/405 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ +I + +I ++ +L +L L +TN+ GN +RTLMG R+ERNE++LLH F
Sbjct: 749 GLMNYISHAEADTYFIAALVLKLQMLSLTKVLTNLAGNSWARTLMGTRAERNEYILLHEF 808
Query: 461 HEKSYVLPDKQYGKNKKEGEET-GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK +G+++ + EE GE + G +KK Y GGLV EP+KG YDK++++MDFN
Sbjct: 809 YRNKYICPDKYFGRSQPKMEEYEGEDDGGDKKKKDKYKGGLVFEPEKGLYDKYVLVMDFN 868
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQEYNICFTT+ ++ +++ +P Q + GILP I LV RR+VK
Sbjct: 869 SLYPSIIQEYNICFTTVNRELVSENENEEKVPEVPADQ-EQGILPRLISTLVSRRREVKK 927
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL NT
Sbjct: 928 LMKNKRATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILQNT 987
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E VIYGDTDS+MI+ NV++ + K+GN+ K N YK LE+D+D V++ +
Sbjct: 988 KELAEKNQLRVIYGDTDSVMINTNVDNMEEALKVGNEFKRLVNDSYKLLEIDVDNVFRRL 1047
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++++IL
Sbjct: 1048 LLHAKKKYAAINMTEV-DGKYVDHLEVKGLDMKRREYCTLSKEVSSKLLTEIL------- 1099
Query: 760 YSLDDR---LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD L ++++++++ + +P+ I +L+K P+
Sbjct: 1100 -SGDDTEVVLGKVYDYLRELTQKMKEFTIPVQKYVIFTKLSKRPD 1143
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 105/191 (54%), Gaps = 9/191 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E R F+LD E G++ LFGKV K ++ S V + NI RK+Y LPR
Sbjct: 345 ETDGSLRFFWLDYTE----VNGSLCLFGKVKDKRSSRFVSAFVKIDNILRKLYFLPREYR 400
Query: 267 L----KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
L T + + + V +E D++ T+ ++ K + +KYAF LP +P ++YL++ Y
Sbjct: 401 LHHGQNTDDEIDMEDVSNEVDELMTKLRVNVHKIKPCTRKYAFELPNIPKKAQYLKLMYP 460
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYE 381
P LP+D+ G+TFSHVFGT T+ E +L + I GP WL+ +A+ S SWCK E
Sbjct: 461 YDKPVLPTDVKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTAVSGASWCKLE 520
Query: 382 VQCNQMEKIRS 392
Q +Q I S
Sbjct: 521 CQVSQPALISS 531
Score = 48.5 bits (114), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGGDGYV 160
A +L+ L+ G K YE + ++YEEV E+ Y V +R + DD++ DD G+GY
Sbjct: 6 AKLAELRALRASGKKRLATYEVEEEGDIYEEVDEEGYKNVVRQRLDRDDFVVDDNGEGYA 65
Query: 161 EDGREIFDD 169
+DGRE +DD
Sbjct: 66 DDGREEWDD 74
>gi|255078890|ref|XP_002503025.1| predicted protein [Micromonas sp. RCC299]
gi|226518291|gb|ACO64283.1| predicted protein [Micromonas sp. RCC299]
Length = 1643
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 205/461 (44%), Positives = 272/461 (59%), Gaps = 32/461 (6%)
Query: 367 EAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIG-------IVEFIKFTMLHSSYIIKI 419
A F +S+ + NQ+ + R + + G ++ K T + + +
Sbjct: 810 SARDFVKEVSYTLTALAKNQLGRHRVEVAATDIPGKFSDASALMGLAKSTESDAWLSLGL 869
Query: 420 MCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEG 479
M L+VLPL Q++N+ GN+ S+TL R++R E+LLLH FH + Y+LPDK K +K G
Sbjct: 870 MFHLSVLPLTRQLSNIAGNLWSKTLQHTRAQRVEYLLLHEFHARKYLLPDKLTAKERKFG 929
Query: 480 EETGEAN---------------KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPS 524
A+ GK R AY+GGLVLEPKKG YDK++++MDFNSLYPS
Sbjct: 930 RGYQNADADLDGGDFDGDGGVKAGKKRGGPAYAGGLVLEPKKGLYDKYVLMMDFNSLYPS 989
Query: 525 IIQEYNICFTTI--PVRMLQDSDITTLCEYLPEHQVDTGI-LPSEIKKLVESRRQVKALM 581
IIQEYNICFTT+ P D LP T + LP IKKLV+ RR+VK ++
Sbjct: 990 IIQEYNICFTTVAQPKADPDDPAAAPPAPTLPTDADGTKVVLPQVIKKLVDRRREVKNMI 1049
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K ++ Q DIRQ ALKLTANSMYGCLGF SRF+A+PLA LVT +GREIL +T
Sbjct: 1050 KT-ERNAARAKQLDIRQMALKLTANSMYGCLGFAASRFYAKPLAELVTLQGREILQSTVD 1108
Query: 642 LVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
L + NL VIYGDTDS+MI+ + V + Q K +K +K LE+++DG+YK ML
Sbjct: 1109 LAQGNLGRNVIYGDTDSIMINTESTNIAEVVDMAKQFKKLSDKRFKVLEIEMDGLYKSML 1168
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
LLKKKKYAAL + +L +G E KG+D+VRRDWS LA E G + +IL +
Sbjct: 1169 LLKKKKYAALMVKQLPDGSYTTVIEQKGLDIVRRDWSPLAKEQGNLALKEIL-----SGN 1223
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+D ++ IHE ++K R DL NG V + ITKQLTK PE
Sbjct: 1224 PTEDVVEGIHETLRKCREDLVNGAVTMDKFIITKQLTKRPE 1264
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 103/240 (42%), Gaps = 53/240 (22%)
Query: 197 DDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHS----------S 246
D SLPL D FF+DA EDI PGTV+LFG+V V + S S
Sbjct: 380 DGSLPLDAD----DTLPFFFVDAHEDI-AHPGTVFLFGRVPVDTSAPTSAPASAPTETVS 434
Query: 247 CCVIVQNIDRKIYLLPRSE----------------------------------HLKTKEP 272
C +V + R ++++PR + L+T +
Sbjct: 435 ACAVVTGMQRCMFVVPRPDVFDDQNGEIESLERAAEEAAKGADDAAAKKARGALLRTLQ- 493
Query: 273 VSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEY-LEVRYSAKCPALPSD 331
V E +I I F + +++ Y F +P +Y L+VR A PALP D
Sbjct: 494 TRAKDVKDEVREILLARGIESFTMKPVKRSYCFERDDIPRGCQYVLKVRCPATGPALPVD 553
Query: 332 LSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQCNQMEK 389
L G F V G T LE+L+++ K+ GPSW+ A PS + SWCK EV ++ K
Sbjct: 554 LKGRHFVAVLGASTPSLEHLVIKSKVMGPSWISIHGARLVPSGQQKSWCKLEVAVDRGHK 613
>gi|348682637|gb|EGZ22453.1| hypothetical protein PHYSODRAFT_496258 [Phytophthora sojae]
Length = 1536
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 176/447 (39%), Positives = 270/447 (60%), Gaps = 62/447 (13%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGG-RSERNEFLLLHAF 460
V F++ T+ + +++++M +L +LPL+ Q+ N+CG + +RTL R+ER E+LLLH F
Sbjct: 774 FVRFLRHTLDDAMFVLQLMHKLEILPLSKQLANLCGYLWTRTLEANKRAERIEYLLLHEF 833
Query: 461 H--EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
+ +++P+K + EA+K R++A+Y+GG+V PKKG YD F++L+DF
Sbjct: 834 SRSKNKFIVPEKFKTRT--------EADKSNKRREASYAGGMVFAPKKGLYDNFVVLLDF 885
Query: 519 NSLYPSIIQEYNICFTTIPVRM-------------------------------------L 541
SLYPSII+EYNICFTT+ ++ L
Sbjct: 886 MSLYPSIIREYNICFTTVERQLNEDVPGAPSASKKKKKSKPMPQPENDEVVDDEDVDQNL 945
Query: 542 QDSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKALMK----QPNLSSDLLMQYD 595
++D + E LP + GILP+ IK+L+ESR+QVK +K + N+ +++ D
Sbjct: 946 DNADASADSEIPALPSSASEPGILPAVIKRLLESRKQVKQQLKIEQKEGNVEKAIML--D 1003
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGD 654
IRQKA+KLTANSMYGCLGF SRF+A+P+AAL+T+ GR+ L K + E Y+VIYGD
Sbjct: 1004 IRQKAIKLTANSMYGCLGFRFSRFYAKPIAALITSTGRQTLQRAKEVAEQECGYDVIYGD 1063
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK 714
TDS+M+ D +IG +I+++CNK +K LEL++D ++K +LLL KKKYAAL + +
Sbjct: 1064 TDSIMVDSRTETLDEAKRIGREIQAQCNKHFKLLELEVDYIFKRILLLNKKKYAALVLKE 1123
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
N + +E+KG+D+VRRDW ++ G V+ IL + S DD +++IHEH++
Sbjct: 1124 RPNSEPTFVKEVKGLDMVRRDWCVISKAVGNEVLDFIL-----SGNSRDDVVESIHEHLE 1178
Query: 775 KIRTDLDNGFVPLTLLEITKQLTKAPE 801
++ + +G P+ ITK L K PE
Sbjct: 1179 QVAERMRSGKEPIAQYVITKSLNKQPE 1205
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 106/194 (54%), Gaps = 25/194 (12%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFV------KENNSHSSCCVIVQNIDRKIYLLPRSE 265
+M+++DA E + ++PG +YL GK+ + K+ + SCCV+V N+ R +YL+P+
Sbjct: 338 IQMYWMDAVE-VRERPGKIYLIGKIKIPSPEGSKQPPTFRSCCVVVNNLQRYMYLVPKGT 396
Query: 266 HL----KTKEPVSIAQVYSEFDQIATQYKILD------FKSRKIEKKYAF---NLPGVPD 312
L +T++ + Q++ E + I F+++ +E+ YAF N+P +
Sbjct: 397 PLNELSETEQQEAWMQMHEEIHNVLIPSCITSRRDQEVFRTKLVERNYAFEEANIPRGKN 456
Query: 313 LSEYLEVRYSAKCPALPSDLS---GDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE 369
L +L+V+Y A+ PA PSD G TF+ + G T LEN LL R++ GP W+E
Sbjct: 457 L--FLKVKYPARYPAPPSDFCSRGGKTFTRICGAFTRPLENFLLTRRLLGPGWVEIKNVR 514
Query: 370 KFPSRISWCKYEVQ 383
K +S+CK E +
Sbjct: 515 KCNEGVSFCKMEFE 528
>gi|358365785|dbj|GAA82407.1| DNA polymerase alpha catalytic subunit [Aspergillus kawachii IFO
4308]
Length = 1465
Score = 314 bits (804), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 249/404 (61%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 748 GLMNFVNHCDADTYFIAALVLRLQMLPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 807
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYS---GGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K K E+ E + K GGLV EP+KG YDKFI++MD
Sbjct: 808 HRNKYICPDKYSSKLLKAEEKMQEGDDEDSADKKKKDKYKGGLVFEPEKGLYDKFILVMD 867
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ D+D +P + GILP I LV RR+V
Sbjct: 868 FNSLYPSIIQEYNICFTTVERTATADNDKEEKVPEVPTSDQEQGILPKLIATLVGRRREV 927
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 928 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 987
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G++ K N+ Y+ LE+DID V++
Sbjct: 988 STKELAESKQLRVIYGDTDSVMINTNMDTISDALKVGDEFKKSVNERYRLLEIDIDNVFR 1047
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + +++++L +
Sbjct: 1048 RLLLHAKKKYAAINMTEV-DGKYVDKLEVKGLDMKRREYCSLSKEVSQKLLNEVLSGEDQ 1106
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L +H++++++ + VP+ I +L+K PE
Sbjct: 1107 -----EVVLNRVHDYLRELAEKMREYSVPVQKYVIYTKLSKRPE 1145
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 78/182 (42%), Positives = 107/182 (58%), Gaps = 9/182 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ RMF+LD F ++ G++ LFGKV K+N S++S V + NI RK+Y LPR
Sbjct: 343 EDDGSLRMFWLD-FTEVN---GSLCLFGKVKNKQNGSYASAFVKIDNILRKLYFLPREYR 398
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
K T E V + VY E D + ++ K+ K + +KYAF LPGVP +EYL++ Y
Sbjct: 399 HKNGRDTDEEVDMEDVYHEVDGMMSRLKVGMHKMKPCTRKYAFELPGVPKETEYLKLFYP 458
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYE 381
LP D+ G+TFSHVFGT TS E +L + I GP WL+ EA+ + SWCK+E
Sbjct: 459 YDKSPLPMDVKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADFTAVNNASWCKFE 518
Query: 382 VQ 383
Q
Sbjct: 519 CQ 520
Score = 45.8 bits (107), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE ++YEEV ++ Y + + R +DD++ DD G+GY
Sbjct: 6 AKLAELRALRAAGKKRLSTYEVEEQGDIYEEVDDEGYKKIIRNRLDQDDFVVDDNGEGYA 65
Query: 161 EDGREIFDDDIED 173
+DGRE++++ D
Sbjct: 66 DDGREVWNERTAD 78
>gi|149240417|ref|XP_001526084.1| DNA polymerase alpha catalytic subunit [Lodderomyces elongisporus
NRRL YB-4239]
gi|146450207|gb|EDK44463.1| DNA polymerase alpha catalytic subunit [Lodderomyces elongisporus
NRRL YB-4239]
Length = 1529
Score = 313 bits (802), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 191/519 (36%), Positives = 293/519 (56%), Gaps = 54/519 (10%)
Query: 339 HVFGTKTS--FLENLLLERKIKGPSWLEFPEAEKFPSRISWCK-------YEVQCN---- 385
H+ K S F NLL+ +G + E S S C+ YEV C+
Sbjct: 717 HITKNKNSSGFNNNLLIREVFQGRLMCDIAN-EMGQSLTSKCQSWDLAEMYEVVCHKKHE 775
Query: 386 ------QMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNV 439
Q K L++L +K ++ +I + +L L+ Q+TN+ GN
Sbjct: 776 PMDISFQNSKFAEDATLLFLA-----LKENNFNAKITSEIAFSIQILSLSKQLTNIAGNA 830
Query: 440 LSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--------YGKNKKEGEETGEANKGKGR 491
S TL G R+ RNE++LLH F + +Y++PDK+ Y + K +
Sbjct: 831 WSHTLSGTRAGRNEYILLHEFRKNNYIVPDKEDALHKNTSYLQQAKLESFDDDVQTATSN 890
Query: 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS-----DI 546
KK + GGLV EP+KG + +I++MDFNSLYPSIIQE+NICFTT+ ++ D+
Sbjct: 891 KKPKFQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEFNICFTTVDRDRFNNTHDEERDL 950
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTAN 606
TL P++ D G+LP + LV RR+VK L+K P + QYDI+Q+ALKLTAN
Sbjct: 951 PTL----PDNDADAGVLPRLLNTLVTRRREVKKLLKDPKNTPFQNAQYDIKQQALKLTAN 1006
Query: 607 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVND 666
SMYGCLG+ NSRF+A+PLA LVT KGREIL++T+ L E+ + V+YGDTDS+MI ++
Sbjct: 1007 SMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAESNSLRVVYGDTDSVMIDTGADN 1066
Query: 667 YDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAAL--SISKLSNGKMICSQ 724
K+G Q K + N+ Y+ LE+DID V++ +LL KKKYAA+ SI+K + G+ + +
Sbjct: 1067 LRDAVKVGEQFKVQVNERYRLLEIDIDNVFRRLLLHAKKKYAAMNASINK-ATGEEVTTL 1125
Query: 725 EIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGF 784
E+KG+D+ RR++ QL+ E FV+ +IL ++ ++ L +++++++++R +
Sbjct: 1126 EVKGLDMRRREYCQLSKEISTFVLMKIL-----SNADPEEALMDVYQYLEEMRDKIIANQ 1180
Query: 785 VPLTLLEITKQLTK----APEGGKVCITQIRLSRNRRGR 819
VP +I +L+K P G + Q+ L +G+
Sbjct: 1181 VPAIKYKINTKLSKDPTSYPNGKNMPQVQVALKLKNQGK 1219
Score = 79.7 bits (195), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 95/192 (49%), Gaps = 19/192 (9%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
FRMF++D E ++ LFGKV ++ S V V + R++++LPR +
Sbjct: 382 FRMFWMDYAE----VENSLLLFGKVATRDGKLVSGV-VQVNGLCRELFILPREYRMVDGE 436
Query: 268 -KTKEP-VSIAQVYSEFDQIATQ-YKILDFKSRKIEKKYAFNLPGVPDLSEYLEV----R 320
T P V+ V E + + YK+ +++ KKYAF L +P +EYL+V
Sbjct: 437 EDTGSPRVTPNDVREEITPLFMEHYKLETLRAKAETKKYAFELANIPKEAEYLKVLLPYN 496
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWC 378
+ LP++ G TF HVFG+ T+ E+ + +R I GP WL+ E F + + C
Sbjct: 497 NATNRKVLPANTEGQTFRHVFGSNTNMFESFVTQRNIMGPCWLDI-EGGNFEAIQNSTHC 555
Query: 379 KYEVQCNQMEKI 390
+ EV + KI
Sbjct: 556 QVEVAVSLPNKI 567
>gi|32329593|gb|AAP45774.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
Length = 1514
Score = 312 bits (799), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 265/430 (61%), Gaps = 40/430 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I + I+ + S Y +M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 772 IFQLIEHSEKDSYYTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 831
Query: 462 EKSYVLPDKQ-----------YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+K ++LPDK+ G +E + G KG RKKA Y+GGLV+EPK GFYD
Sbjct: 832 KKKFILPDKKPPNAKDLRRGFMGDEYEENDTKGGGKKGGKRKKAKYAGGLVIEPKAGFYD 891
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEY----------------LP 554
I+L+DFNSLYPSIIQEYN+CFTT+ R ++ D + L LP
Sbjct: 892 NIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDLP 951
Query: 555 EHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 612
+ V+ +LP+ ++ LV+ R+ VK MK L Q +IRQKA+KLTANSMYGCL
Sbjct: 952 DKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEK-DQVKLQQLEIRQKAIKLTANSMYGCL 1010
Query: 613 GFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVF 671
GF +SRF A +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ N
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070
Query: 672 KIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDV 731
++G ++K E N LYK LE++IDGV+K +LLLKKKKYAAL + + ++ QE+KG+D+
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVXVIQEMKGLDM 1130
Query: 732 VRRDWSQLASEAGKFVISQILDEQSYTD--YSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
VRRDW L+ G +V+SQIL + D ++L++ L +I E MK R LD F+
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQ-FI---- 1185
Query: 790 LEITKQLTKA 799
ITKQLT+A
Sbjct: 1186 --ITKQLTRA 1193
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 16/218 (7%)
Query: 176 QKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 235
Q ++ H + K + + ++ +LPL D + +DA E+ +++FGK
Sbjct: 332 QNQQAHQEFKTMEQKSAMDIQEFALPLNQDGS----LSFYXIDAHEE--NNGADLFIFGK 385
Query: 236 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS-------IAQVYSEFDQIATQ 288
+F E N + SC + V + R+IY LP+ + K + ++ + V E + I +
Sbjct: 386 IFQPEINQYVSCSMKVNGMQREIYALPKMQKGKARGTLTREDENQLVRGVQLELEDIRKK 445
Query: 289 --YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTS 346
I ++ + + +KYAF +P +L+++Y A LPS + G+TF +FG+ S
Sbjct: 446 RFQGITKWRCKPVTRKYAFEMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQS 505
Query: 347 FLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQ 383
LE +L+RKIKGP W+ +K + +WC+ E++
Sbjct: 506 MLELFILKRKIKGPCWMTIKNPKKVTDFKKTWCRQEIE 543
Score = 39.7 bits (91), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 120 KYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFD-DDIEDVPQKK 178
+Y+ + ++EE+ EY +R+ DD+I DD G GY + G EI++ DD E+V KK
Sbjct: 42 QYQVEEAKRIFEEIDADEYERIQDQRKNDDFIVDDDGFGYRDHGGEIWERDDNEEVGGKK 101
Query: 179 EKHDKRKKNKNIQNPNAKDDSLPLATDHENK 209
+ KRK + N Q + + +P +T +NK
Sbjct: 102 K---KRKLDPNEQ--HITNFMMPASTIRKNK 127
>gi|32329597|gb|AAP45776.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
Length = 1514
Score = 312 bits (799), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 195/430 (45%), Positives = 267/430 (62%), Gaps = 40/430 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I + I+ + S Y +M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 772 IFQLIEHSEKDSYYTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 831
Query: 462 EKSYVLPDKQ-----------YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+K ++LPDK+ G +E + G KG RKKA Y+GGLV+EPK GFYD
Sbjct: 832 KKKFILPDKKPPNAKDLRRGFMGDEYEENDTKGGGKKGGKRKKAKYAGGLVIEPKAGFYD 891
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL-CEY---------------LP 554
I+L+DFNSLYPSIIQEYN+CFTT+ R ++ D + L +Y LP
Sbjct: 892 NIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQYKSADNAEGDEVEDVDLP 951
Query: 555 EHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 612
+ V+ +LP+ ++ LV+ R+ VK MK L Q +IRQKA+KLTANSMYGCL
Sbjct: 952 DKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEK-DQVKLQQLEIRQKAIKLTANSMYGCL 1010
Query: 613 GFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVF 671
GF +SRF A +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ N
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070
Query: 672 KIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDV 731
++G ++K E N LYK LE++IDGV+K +LLLKKKKYAAL + + ++ QE+KG+D+
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLDM 1130
Query: 732 VRRDWSQLASEAGKFVISQILDEQSYTD--YSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
VRRDW L+ G +V+SQIL + D ++L++ L +I E MK R LD F+
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQ-FI---- 1185
Query: 790 LEITKQLTKA 799
ITKQLT+A
Sbjct: 1186 --ITKQLTRA 1193
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 176 QKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 235
Q ++ H + K + + ++ +LPL D +++DA E+ +++FGK
Sbjct: 332 QNQQAHQEFKTMEQKSAMDIQEFALPLNQDGS----LSFYWIDAHEE--NNGADLFIFGK 385
Query: 236 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS-------IAQVYSEFDQIATQ 288
+F E N + SC + V + R+IY LP+ + K + ++ + V E + I +
Sbjct: 386 IFQPEINQYVSCSMKVNGMQREIYALPKMQKGKARGTLTREEENQLVRGVQLELEDIRKK 445
Query: 289 --YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTS 346
I ++ + + +KYAF +P +L+++Y A LPS + G+TF +FG+ S
Sbjct: 446 RFQGITKWRCKPVTRKYAFEMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQS 505
Query: 347 FLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCN 385
LE +L+RKIKGP W+ +K + +WC+ E++ +
Sbjct: 506 MLELFILKRKIKGPCWMTIKNPKKVTDFKKTWCRQEIEID 545
Score = 39.7 bits (91), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 120 KYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFD-DDIEDVPQKK 178
+Y+ + ++EE+ EY +R+ DD+I DD G GY + G EI++ DD E+V KK
Sbjct: 42 QYQVEEAKRIFEEIDADEYERIQDQRKNDDFIVDDDGFGYRDHGGEIWERDDNEEVGGKK 101
Query: 179 EKHDKRKKNKNIQNPNAKDDSLPLATDHENK 209
+ KRK + N Q + + +P +T +NK
Sbjct: 102 K---KRKLDPNEQ--HITNFMMPASTIRKNK 127
>gi|301109283|ref|XP_002903722.1| DNA polymerase alpha catalytic subunit, putative [Phytophthora
infestans T30-4]
gi|262096725|gb|EEY54777.1| DNA polymerase alpha catalytic subunit, putative [Phytophthora
infestans T30-4]
Length = 1523
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 176/445 (39%), Positives = 268/445 (60%), Gaps = 58/445 (13%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGG-RSERNEFLLLHAF 460
V+F++ T+ + +++ +M +L +LPL+ Q+ N+CG + +RTL R+ER E+LLLH F
Sbjct: 762 FVKFLRHTLDDAMFVLHLMHKLEILPLSKQLANLCGYMWTRTLEANKRAERIEYLLLHEF 821
Query: 461 H--EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
+ +++P+K + EA+K R++A+Y+GG+V PKKG YD F++L+DF
Sbjct: 822 SRSKNKFIVPEKFKSRT--------EADKSNKRREASYAGGMVFAPKKGLYDNFVVLLDF 873
Query: 519 NSLYPSIIQEYNICFTTI----------------------PV---------------RML 541
SLYPSII+EYNICFTT+ P+ + L
Sbjct: 874 MSLYPSIIREYNICFTTVERQLNEDVSGAPSSIKKKKKSKPMPQPENDEVVDDEDMDQNL 933
Query: 542 QDSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIR 597
++D + E LP + G+LP+ IK+L+ESR+QVK +K Q + + DIR
Sbjct: 934 DNADASADSEIPALPSSASEPGVLPAVIKRLLESRKQVKQQLKIEQKEGNVEKANMLDIR 993
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTD 656
QKA+KLTANSMYGCLGF SRF+A+P+AAL+T+ GR+ L K + E Y+VIYGDTD
Sbjct: 994 QKAIKLTANSMYGCLGFRFSRFYAKPIAALITSTGRQTLQRAKEVAEQECGYDVIYGDTD 1053
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS 716
S+M+ D +IG +I+++CNK +K LEL++D ++K +LLL KKKYAAL + +
Sbjct: 1054 SIMVDSRTETLDEAKRIGREIQAQCNKHFKLLELEVDYIFKRILLLNKKKYAALVMKERP 1113
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 776
N + +E+KG+D+VRRDW ++ G V+ IL + S DD +++IHEH++++
Sbjct: 1114 NSEPTFDKEVKGLDMVRRDWCVISKAVGNEVLDFIL-----SGNSRDDVVESIHEHLEQV 1168
Query: 777 RTDLDNGFVPLTLLEITKQLTKAPE 801
+ +G P+ ITK L K PE
Sbjct: 1169 AERMRSGKEPIEQYVITKSLNKQPE 1193
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 113/210 (53%), Gaps = 26/210 (12%)
Query: 194 NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFV------KENNSHSSC 247
+A+ ++LP A D +M+++DA E + ++PG +YL GK+ + + + SC
Sbjct: 313 DAEPETLPSAADS-----IQMYWMDAVE-VRERPGKIYLIGKMKIPSPEGSNQPPTFRSC 366
Query: 248 CVIVQNIDRKIYLLPRSEHL----KTKEPVSIAQVYSEFDQIATQYKILD------FKSR 297
CV+V N+ R +YL+P+ L T++ + +++ E I I + FK++
Sbjct: 367 CVVVNNLQRYMYLVPKGTPLIELSNTEQQEAWMKMHEEIHNILIPSCITNRRDQEVFKTK 426
Query: 298 KIEKKYAFNLPGVP-DLSEYLEVRYSAKCPALPSDLS---GDTFSHVFGTKTSFLENLLL 353
+E+ YAF +P +++L+V+Y AK PA PSD G TFS + G T LEN LL
Sbjct: 427 LVERNYAFEEANIPRGKNQFLKVKYPAKYPAPPSDFCSRGGKTFSRICGAFTRPLENFLL 486
Query: 354 ERKIKGPSWLEFPEAEKFPSRISWCKYEVQ 383
R++ GP W+E K +S+CK E +
Sbjct: 487 TRRLLGPGWVEIKGVRKCTEGVSFCKMEFE 516
>gi|71841810|gb|AAZ43188.1| DNA polymerase alpha [Euplotes aediculatus]
Length = 1404
Score = 311 bits (798), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 177/411 (43%), Positives = 253/411 (61%), Gaps = 26/411 (6%)
Query: 409 TMLHSS----YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS 464
+LH+ + ++++ +L++ PL Q+TN+ GN+ R+L +ERNE LLLH F+ K+
Sbjct: 677 AILHTEKDAFFTVQLLFKLSIXPLTKQLTNIAGNLWFRSLXNAXAERNEMLLLHEFNRKN 736
Query: 465 YVLPDKQYGKNKKEGEETGEA------NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
++ PDK+Y K + ++ + N GK RKKAAY GGLVL+PK G YDK ++L+DF
Sbjct: 737 FICPDKEYNKKPLKNQDEEKEEEDDDENYGK-RKKAAYEGGLVLDPKPGLYDKIVLLLDF 795
Query: 519 NSLYPSIIQEYNICFTTI--------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKL 570
NSLYPSIIQEYN+CFTT+ R + D+ I + + Q ++ ILPS +K L
Sbjct: 796 NSLYPSIIQEYNLCFTTVERCVTHDFDGREISDAKIDEVDVPILGEQQESAILPSILKML 855
Query: 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
V+ + K MK L Q +I+QKALKLTANSMYGCLGF +SRF+A+ +AAL+T
Sbjct: 856 VKQEKISKDQMKVEK-DKGKLDQLEIKQKALKLTANSMYGCLGFSSSRFYAKAIAALITR 914
Query: 631 KGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
KGR+ L T + N L Y V+YGDTDS+M+S N+ IG++IK E NK YK LE
Sbjct: 915 KGRDALKATYDIANNILGYNVVYGDTDSIMVSTGSNNLKDAILIGDEIKKEVNKKYKHLE 974
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+++DGV++ LLLKKKKYAAL L++ +E+KG+ +VRRDW L+ G +V+
Sbjct: 975 IELDGVFRSPLLLKKKKYAALVYEDLNDPNSFRKKEVKGLXMVRRDWCPLSKAIGNYVLG 1034
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+IL +S D N+ + + L N + + ITKQLT+ P
Sbjct: 1035 EILSSKSQ-----DXXQINLRAYFTDMXDKLKNNEIKMKDFIITKQLTRPP 1080
Score = 119 bits (297), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 119/223 (53%), Gaps = 25/223 (11%)
Query: 166 IFDDDIE--DVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDI 223
+FD D+E DV + N N + D PL + +N +F++D E+
Sbjct: 241 VFDGDVEMEDVSEHM--------NTEPLNLSTDDKKRPLPLNSDN--TLSVFWIDGHEEX 290
Query: 224 YKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFD 283
Q VYLFGK++ +SS C++V+ I+R +Y +P KE VSI V++E
Sbjct: 291 INQ-SEVYLFGKIYDSSVKKYSSICLVVKGINRVLYCVP-------KEGVSIGDVHTEIS 342
Query: 284 QIATQ-YK-ILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVF 341
++ + +K I FKS+ EK Y F P + LE+RYS++ LP +L+G TF H+F
Sbjct: 343 KLFEERFKYIKKFKSKPAEKNYCFETPLKKGKNSVLEIRYSSEYATLPPNLTGKTFQHIF 402
Query: 342 GTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRI--SWCKYEV 382
G TS LE L+++ K+ GP WL + K +++ SWC YEV
Sbjct: 403 GKNTSVLELLIIQLKLMGPCWLTV-KNPKVNTQVKKSWCDYEV 444
>gi|32329591|gb|AAP45773.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
Length = 1514
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 265/430 (61%), Gaps = 40/430 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I + I+ + S Y +M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 772 IFQLIEHSEKDSYYTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 831
Query: 462 EKSYVLPDKQ-----------YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+K ++LPDK+ G +E + G KG RKKA Y+GGLV+EPK GFYD
Sbjct: 832 KKKFILPDKKPPNAKDLRRGFMGDEYEENDTKGGGKKGGKRKKAKYAGGLVIEPKAGFYD 891
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEY----------------LP 554
I+L+DFNSLYPSIIQEYN+CFTT+ R ++ D + L LP
Sbjct: 892 NIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDLP 951
Query: 555 EHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 612
+ V+ +LP+ ++ LV+ R+ VK MK L Q +IRQKA+KLTANSMYGCL
Sbjct: 952 DKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEK-DQVKLQQLEIRQKAIKLTANSMYGCL 1010
Query: 613 GFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVF 671
GF +SRF A +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ N
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070
Query: 672 KIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDV 731
++G ++K E N LYK LE++IDGV+K +LLLKKKKYAAL + + ++ QE+KG+D+
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLDM 1130
Query: 732 VRRDWSQLASEAGKFVISQILDEQSYTD--YSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
VRRDW L+ G +V+SQIL + D ++L++ L +I E MK R LD F+
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQ-FI---- 1185
Query: 790 LEITKQLTKA 799
ITKQLT+A
Sbjct: 1186 --ITKQLTRA 1193
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 176 QKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 235
Q ++ H + K + + ++ +LPL D +++DA E+ +++FGK
Sbjct: 332 QNQQAHQEFKTMEQKSAMDIQEFALPLNQDGS----LSFYWIDAHEE--NNGADLFIFGK 385
Query: 236 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS-------IAQVYSEFDQIATQ 288
++ E N + SC + V + R+IY LP+ + K + ++ + V E + I +
Sbjct: 386 IYQPEINQYVSCSMKVNGMQREIYALPKMQKGKARGTLTREEENQLVRGVQLELEDIRKK 445
Query: 289 --YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTS 346
I ++ + + +KYAF +P +L+++Y A LPS + G+TF +FG+ S
Sbjct: 446 RFQGITKWRCKPVTRKYAFEMPIXHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQS 505
Query: 347 FLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCN 385
LE +L+RKIKGP W+ +K + +WC+ E++ +
Sbjct: 506 MLELFILKRKIKGPCWMTIKNPKKVTDFKKTWCRQEIEID 545
Score = 39.7 bits (91), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 120 KYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFD-DDIEDVPQKK 178
+Y+ + ++EE+ EY +R+ DD+I DD G GY + G EI++ DD E+V KK
Sbjct: 42 QYQVEEAKRIFEEIDADEYERIQDQRKNDDFIVDDDGFGYRDHGGEIWERDDNEEVGGKK 101
Query: 179 EKHDKRKKNKNIQNPNAKDDSLPLATDHENK 209
+ KRK + N Q + + +P +T +NK
Sbjct: 102 K---KRKLDPNEQ--HITNFMMPASTIRKNK 127
>gi|121715516|ref|XP_001275367.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus
clavatus NRRL 1]
gi|119403524|gb|EAW13941.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus
clavatus NRRL 1]
Length = 1461
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 253/404 (62%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ L +L L +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 745 GLMNFVNHCDADTYFIAALVLRLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 804
Query: 461 HEKSYVLPDKQYGKNKK---EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K +K + ++ E + +KK Y GGLV EP+KG YDKF+++MD
Sbjct: 805 HRNKYICPDKYSSKLQKVEEKNQDGEEDDAADKKKKDKYKGGLVFEPEKGLYDKFVLVMD 864
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 865 FNSLYPSIIQEYNICFTTVDRTATAENENEEKVPEVPSSDQEQGILPRLIATLVGRRREV 924
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + D L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 925 KKLMKDKRATPDQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 984
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G + K N+ Y+ LE+DID +++
Sbjct: 985 STKELAESKQLRVIYGDTDSVMINTNMDTISDALKVGEEFKKSVNERYRLLEIDIDNIFR 1044
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + +++++L S
Sbjct: 1045 RLLLHAKKKYAAVNMTEV-DGKYVDKLEVKGLDMKRREYCALSKEVSQRLLNEVL---SG 1100
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L L +H+++K++ + +P+ I +L+K PE
Sbjct: 1101 EDQEL--VLNRVHDYLKELADKMRAYQIPVQKYVIYTKLSKRPE 1142
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 101/184 (54%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
R F++D E G++ LFGKV K +S++S V V I RK++ LPR K
Sbjct: 345 LRFFWIDYTE----VNGSLCLFGKVKNKRTDSYASAFVKVDQILRKLFFLPREHRHKHGR 400
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D + ++ ++ K + +KYAF +P +P +EYL++ Y P
Sbjct: 401 ETDEEVDMKDVYEEVDALMSRLRVGMHKIKPATRKYAFEMPNIPKETEYLKLLYPYDKPV 460
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP D G+TFSHVFGT TS E +L + I GP WL+ +A+ + SWCK+E Q +
Sbjct: 461 LPMDTKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEDADFSAVNNASWCKFECQVTK 520
Query: 387 MEKI 390
I
Sbjct: 521 PVSI 524
Score = 47.8 bits (112), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A ++L+ L+ G K YE +++YEEV ++ Y + + R +DD++ DD G+GY
Sbjct: 6 AKLEELRALRAAGKKRLSTYEIEEQDDIYEEVDDEGYKKIIRNRLDQDDFVVDDNGEGYA 65
Query: 161 EDGREIFDD 169
+DGRE++++
Sbjct: 66 DDGREVWNE 74
>gi|32329601|gb|AAP45778.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
Length = 1514
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 265/430 (61%), Gaps = 40/430 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I + I+ + S Y +M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 772 IFQLIEHSEKDSYYTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 831
Query: 462 EKSYVLPDKQ-----------YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+K ++LPDK+ G +E + G KG RKKA Y+GGLV+EPK GFYD
Sbjct: 832 KKKFILPDKKPPNAKDLRRGFMGDEYEENDTKGGGKKGGKRKKAKYAGGLVIEPKAGFYD 891
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEY----------------LP 554
I+L+DFNSLYPSIIQEYN+CFTT+ R ++ D + L LP
Sbjct: 892 NIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDLP 951
Query: 555 EHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 612
+ V+ +LP+ ++ LV+ R+ VK MK L Q +IRQKA+KLTANSMYGCL
Sbjct: 952 DKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEK-DQVKLQQLEIRQKAIKLTANSMYGCL 1010
Query: 613 GFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVF 671
GF +SRF A +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ N
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENXLGFNVVYGDTDSIMINTGTNQLQQSL 1070
Query: 672 KIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDV 731
++G ++K E N LYK LE++IDGV+K +LLLKKKKYAAL + + ++ QE+KG+D+
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLDM 1130
Query: 732 VRRDWSQLASEAGKFVISQILDEQSYTD--YSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
VRRDW L+ G +V+SQIL + D ++L++ L +I E MK R LD F+
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQ-FI---- 1185
Query: 790 LEITKQLTKA 799
ITKQLT+A
Sbjct: 1186 --ITKQLTRA 1193
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 176 QKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 235
Q ++ H + K + + ++ +LPL D +++DA E+ +++FGK
Sbjct: 332 QNQQAHQEFKTMEQKSAMDIQEFALPLNQDGS----LSFYWIDAHEE--NNGADLFIFGK 385
Query: 236 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS-------IAQVYSEFDQIATQ 288
++ E N + SC + V + R+IY LP+ + K + ++ + V E + I +
Sbjct: 386 IYQPEINQYVSCSMKVNGMQREIYALPKMQKGKARGTLTREEENQLVRGVQLELEDIRKK 445
Query: 289 --YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTS 346
I ++ + + +KYAF +P +L+++Y A LPS + G+TF +FG+ S
Sbjct: 446 RFQGITKWRCKPVTRKYAFEMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQS 505
Query: 347 FLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCN 385
LE +L+RKIKGP W+ +K + +WC+ E++ +
Sbjct: 506 MLELFILKRKIKGPCWMTIKNPKKVTDFKKTWCRQEIEID 545
Score = 39.7 bits (91), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 120 KYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFD-DDIEDVPQKK 178
+Y+ + ++EE+ EY +R+ DD+I DD G GY + G EI++ DD E+V KK
Sbjct: 42 QYQVEEAKRIFEEIXADEYERIQDQRKNDDFIVDDDGFGYRDHGGEIWERDDNEEVGGKK 101
Query: 179 EKHDKRKKNKNIQNPNAKDDSLPLATDHENK 209
+ KRK + N Q + + +P +T +NK
Sbjct: 102 K---KRKLDPNEQ--HITNFMMPASTIRKNK 127
>gi|365987994|ref|XP_003670828.1| hypothetical protein NDAI_0F02670 [Naumovozyma dairenensis CBS 421]
gi|343769599|emb|CCD25585.1| hypothetical protein NDAI_0F02670 [Naumovozyma dairenensis CBS 421]
Length = 1294
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 258/406 (63%), Gaps = 19/406 (4%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK--NKKEGE 480
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ K +++ +
Sbjct: 594 IQMLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFTRNGFIVPDKETNKMRTQRQRK 653
Query: 481 ETGEANKGKG---RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ G+ G KKA Y GGLV EP+KG + +I++MDFNSLYPSIIQEYNICFTT
Sbjct: 654 QMGDQQDGDAPVSSKKAKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEYNICFTT-- 711
Query: 538 VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 597
V QD DI L E +P + G+LP + LV+ RR+VK +MK +Q DIR
Sbjct: 712 VERNQD-DIDELPE-VPSSDIAQGVLPRLLANLVDRRREVKKIMKT-ETDPHKKIQCDIR 768
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 657
Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS
Sbjct: 769 QQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDS 828
Query: 658 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSN 717
+MI + Y KIGN K N+ YK LE+DID V+K +LL KKKYAAL+++ +
Sbjct: 829 VMIDTGCDTYADAIKIGNDFKKLVNERYKLLEIDIDNVFKRLLLHAKKKYAALNVTLNKD 888
Query: 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 777
G + E+KG+D+ RR++ L+ + V++ IL +D + LQ I+ +++ IR
Sbjct: 889 GSERLTLEVKGLDMKRREFCPLSKDVSTHVLNTIL-----SDKDPEAALQEIYGYLEDIR 943
Query: 778 TDLDNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
++N + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 944 NKMENNEIRVDKYKINMKLSKDPQAYPGGKNMPAVQVALKMRKAGR 989
Score = 89.7 bits (221), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 94/186 (50%), Gaps = 19/186 (10%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
F+ F+LD F ++ T+ LFGK + S S V + + R++Y LPR + +
Sbjct: 178 FQFFWLD-FTEVN---NTLVLFGKAKTLDG-SFISAMVQINGLCRELYFLPRENNTPEEI 232
Query: 272 PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP----- 326
I + E +Y + + +++ +KKYAF LP +P + YL+V P
Sbjct: 233 HEEIVPLLLE------KYGLDNIRAKPEKKKYAFELPDIPHEANYLKVLMPFNTPKSSND 286
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQC 384
+P DLS DTFSHVFG T+ E +++ KI GP WLE + + F + S C EV
Sbjct: 287 LIPPDLSSDTFSHVFGGNTNIFEAFVVQNKIMGPCWLEIKDGD-FTALQNASHCSIEVAV 345
Query: 385 NQMEKI 390
N+ + +
Sbjct: 346 NKPQNV 351
>gi|32329595|gb|AAP45775.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
Length = 1514
Score = 311 bits (797), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 265/430 (61%), Gaps = 40/430 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I + I+ + S Y +M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 772 IFQLIEHSEKDSYYTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 831
Query: 462 EKSYVLPDKQ-----------YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+K ++LPDK+ G +E + G KG RKKA Y+GGLV+EPK GFYD
Sbjct: 832 KKKFILPDKKPPNAKDLRRGFMGDEYEENDTKGGGKKGGKRKKAKYAGGLVIEPKAGFYD 891
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEY----------------LP 554
I+L+DFNSLYPSIIQEYN+CFTT+ R ++ D + L LP
Sbjct: 892 NIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDLP 951
Query: 555 EHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 612
+ V+ +LP+ ++ LV+ R+ VK MK L Q +IRQKA+KLTANSMYGCL
Sbjct: 952 DKNVNIXDAVLPNVLRDLVQKRKAVKEKMKNEK-DQVKLQQLEIRQKAIKLTANSMYGCL 1010
Query: 613 GFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVF 671
GF +SRF A +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ N
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070
Query: 672 KIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDV 731
++G ++K E N LYK LE++IDGV+K +LLLKKKKYAAL + + ++ QE+KG+D+
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLDM 1130
Query: 732 VRRDWSQLASEAGKFVISQILDEQSYTD--YSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
VRRDW L+ G +V+SQIL + D ++L++ L +I E MK R LD F+
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQ-FI---- 1185
Query: 790 LEITKQLTKA 799
ITKQLT+A
Sbjct: 1186 --ITKQLTRA 1193
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 176 QKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 235
Q ++ H + K + + ++ +LPL D +++DA E+ +++FGK
Sbjct: 332 QNQQAHQEFKTMEQKSAMDIQEFALPLNQDGS----LSFYWIDAHEE--NNGADLFIFGK 385
Query: 236 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS-------IAQVYSEFDQIATQ 288
++ E N + SC + V + R+IY LP+ + K + ++ + V E + I +
Sbjct: 386 IYQPEINQYVSCSMKVNGMQREIYALPKMQKGKARGTLTREEENQLVRGVQLELEDIRKK 445
Query: 289 --YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTS 346
I ++ + + +KYAF +P +L+++Y A LPS + G+TF +FG+ S
Sbjct: 446 RFQGITKWRCKPVTRKYAFEMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQS 505
Query: 347 FLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCN 385
LE +L+RKIKGP W+ +K + +WC+ E++ +
Sbjct: 506 MLELFILKRKIKGPCWMTIKNPKKVTDFKKTWCRQEIEID 545
Score = 39.7 bits (91), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 120 KYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFD-DDIEDVPQKK 178
+Y+ + ++EE+ EY +R+ DD+I DD G GY + G EI++ DD E+V KK
Sbjct: 42 QYQVEEAKRIFEEIDADEYERIQDQRKNDDFIVDDDGFGYRDHGGEIWERDDNEEVGGKK 101
Query: 179 EKHDKRKKNKNIQNPNAKDDSLPLATDHENK 209
+ KRK + N Q + + +P +T +NK
Sbjct: 102 K---KRKLDPNEQ--HITNFMMPASTIRKNK 127
>gi|350634362|gb|EHA22724.1| DNA polymerase alpha, catalytic subunit [Aspergillus niger ATCC 1015]
Length = 1971
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 250/404 (61%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 747 GLMNFVNHCDADTYFIAALVLRLQMLPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 806
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYS---GGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K K E+ E + + K GGLV EP+KG YDKFI++MD
Sbjct: 807 HRNKYICPDKYSSKLLKAEEKMQEGDDDESADKKKKDKYKGGLVFEPEKGLYDKFILVMD 866
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ D+D +P + GILP I LV RR+V
Sbjct: 867 FNSLYPSIIQEYNICFTTVERTATADNDKEEKVPEVPTSDQEQGILPKLIATLVGRRREV 926
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 927 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 986
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G++ K N+ Y+ LE+DID V++
Sbjct: 987 STKELAESKQLRVIYGDTDSVMINTNMDTISDALKVGDEFKKSVNERYRLLEIDIDNVFR 1046
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + +++++L +
Sbjct: 1047 RLLLHAKKKYAAINMTEV-DGKYVDKLEVKGLDMKRREYCSLSKEVSQKLLNEVLSGEDQ 1105
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L +H++++++ + VP+ I +L+K PE
Sbjct: 1106 -----EVVLNRVHDYLRELAEKMREFSVPVQKYVIYTKLSKRPE 1144
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 77/178 (43%), Positives = 105/178 (58%), Gaps = 9/178 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
RMF+LD F ++ G++ LFGKV K+N S++S V V NI RK+Y LPR K
Sbjct: 347 LRMFWLD-FTEVN---GSLCLFGKVKNKQNGSYASAFVKVDNILRKLYFLPREYRHKNGR 402
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D + ++ ++ K + +KYAF LPGVP +EYL++ Y
Sbjct: 403 ETDEEVDMEDVYHEVDGMMSRLRVGMHKMKPCTRKYAFELPGVPKETEYLKLFYPYDKSP 462
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQC 384
LP D+ G+TFSHVFGT TS E +L + I GP WL+ EA+ + SWCK+E Q
Sbjct: 463 LPMDVKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADFTAVNNASWCKFECQA 520
Score = 45.8 bits (107), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE ++YEEV ++ Y + + R +DD++ DD G+GY
Sbjct: 6 AKLAELRALRAAGKKRLSTYEVEEQGDIYEEVDDEGYKKIIRNRLDQDDFVVDDNGEGYA 65
Query: 161 EDGREIFDDDIED 173
+DGRE++++ D
Sbjct: 66 DDGREVWNERTAD 78
>gi|327302928|ref|XP_003236156.1| DNA polymerase alpha catalytic subunit [Trichophyton rubrum CBS
118892]
gi|326461498|gb|EGD86951.1| DNA polymerase alpha catalytic subunit [Trichophyton rubrum CBS
118892]
Length = 1467
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 253/405 (62%), Gaps = 13/405 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ +L +LPL +TN+ GN SRTL G R+ERNE++LLH F
Sbjct: 752 GLMNFLSHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWSRTLSGTRAERNEYILLHEF 811
Query: 461 HEKSYVLPDKQYGKNK-KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK KN+ K E GE +KK Y GGLV EP+KG YDK +++MDFN
Sbjct: 812 YRGKYICPDKYGHKNQIKVEENEGEEEGVDKKKKEKYKGGLVFEPEKGLYDKHVLVMDFN 871
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ ++D +P+ GILP I LV RR+VK
Sbjct: 872 SLYPSIIQEFNICFTTVDRHASSENDREESVPEVPDSDQPLGILPRLIATLVSRRREVKK 931
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL NT
Sbjct: 932 LMKDKSATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRNT 991
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E VIYGDTDS+MI+ N ++ K+GN+ K N+ Y+ LE+DID V+K +
Sbjct: 992 KELAETNQLRVIYGDTDSVMINTNTDNVQEALKVGNEFKRLVNQRYRLLEIDIDNVFKRL 1051
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA+++S++ +GK + E+KG+D+ RR++ L+ E ++ +IL
Sbjct: 1052 LLHAKKKYAAINLSEV-DGKYVERLEVKGLDMKRREFCALSKEVSTKLLHEIL------- 1103
Query: 760 YSLDD---RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
S DD L IH++++++ + +P+ I +L+K P+
Sbjct: 1104 -SGDDVEVVLNKIHDYLRELAQKMHEYAIPVQKYVIYTKLSKKPD 1147
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 102/184 (55%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
+ F+LD E G++ LFGKV K NNS+ S V V NI RK+Y LPR
Sbjct: 352 LKFFWLDYTE----INGSLCLFGKVKNKTNNSYVSAFVKVDNILRKLYFLPREYKYVRGQ 407
Query: 268 KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D I ++ K+ K + +KYAF LP +P +EYL++ Y PA
Sbjct: 408 STSEEVDMEDVYGEVDNIMSRSKVEMHKIKPCTRKYAFELPDIPKEAEYLKLMYPYTKPA 467
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP +L G+TFSHVFGT T+ E +L + I GP WL+ +A+ + SWCK E +
Sbjct: 468 LPMELKGETFSHVFGTNTALFEQFVLWKNIMGPCWLKIEDADFTAVNGASWCKLECEVTN 527
Query: 387 MEKI 390
+I
Sbjct: 528 PAEI 531
Score = 53.9 bits (128), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 105 AFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGGDGYVE 161
+LK L+ G K YE DE++YE+V E+ Y + V KR + DD++ DD G+GY +
Sbjct: 7 TLAELKALRASGKKRLSTYEVQEDEDIYEQVDEEGYKKVVRKRLDRDDFVVDDNGEGYAD 66
Query: 162 DGREIFDD 169
DGRE +DD
Sbjct: 67 DGREEWDD 74
>gi|255726188|ref|XP_002548020.1| DNA polymerase alpha catalytic subunit [Candida tropicalis MYA-3404]
gi|240133944|gb|EER33499.1| DNA polymerase alpha catalytic subunit [Candida tropicalis MYA-3404]
Length = 1473
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 165/388 (42%), Positives = 245/388 (63%), Gaps = 15/388 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--YGKNKKEGE 480
+ +L L+ Q+TN+ GN S TL G R+ RNE++LLH F +Y++PDK+ KN +
Sbjct: 759 IQILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFKRNNYIVPDKEDKTHKNTSYQQ 818
Query: 481 ET------GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT 534
E +A KK Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFT
Sbjct: 819 EARLENAEEDATTATSNKKPKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFT 878
Query: 535 TIP-VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ 593
T+ R D LPE + G+LP + LV RR+VK L+K P + Q
Sbjct: 879 TVDRDRFNMTHDENKDMPILPEKESAPGVLPRLLNTLVSRRREVKKLLKDPKNTPFQKAQ 938
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG 653
YDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T+ L E+ + V+YG
Sbjct: 939 YDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAESSSLRVVYG 998
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
DTDS+MI N + KIG + K + N+ Y+ LE+DID V+K +LL KKKYAA++ S
Sbjct: 999 DTDSVMIDTGANSFKEAIKIGEEFKVQVNERYRLLEIDIDNVFKRLLLHAKKKYAAMNAS 1058
Query: 714 -KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ G+ + E+KG+D+ RR++ QL+ + +V+ +IL +D + L +++ +
Sbjct: 1059 IDRATGEESTTLEVKGLDMRRREYCQLSKDISTYVLMKIL-----SDSDPEAALIDVYNY 1113
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+++++ + N +P+ +I +L+K P
Sbjct: 1114 LEEMKNKIQNNEIPVDRYKINTKLSKDP 1141
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/182 (34%), Positives = 96/182 (52%), Gaps = 16/182 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
F+MF+LD E ++ LFGK+ KE S V V+ + R++Y+LPR L
Sbjct: 330 FKMFWLDYSE----SDCSLLLFGKIMTKEGGLISGV-VKVEGLCRELYILPRDHPLVDGE 384
Query: 268 -KTKEPVSIAQVYSEFDQIA-TQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEV--RYSA 323
E V+ A V E + + + YK+ +++ KKYAF L +P +EYL+V +SA
Sbjct: 385 EDQNETVTPADVLEEINPVLLSNYKLDSIRAKPERKKYAFELADIPKEAEYLKVLLPFSA 444
Query: 324 KCP--ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKY 380
+ +PS++ G TF H+FGT T+ E + +R I GP WLE + + S C+
Sbjct: 445 ETNKNIMPSNIEGRTFRHIFGTNTNMFEAFVTQRNIMGPCWLEIKNGDFRAMQNASHCQA 504
Query: 381 EV 382
EV
Sbjct: 505 EV 506
>gi|259479896|tpe|CBF70539.1| TPA: catalytic subunit of the DNA polymerase alpha-primase complex
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 1459
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 259/406 (63%), Gaps = 13/406 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+V F+ + +I ++ +L +L L +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 742 GLVNFVTHCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 801
Query: 461 HEKSYVLPDKQYGKNKKE---GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
++ Y+ PDK K +K +E E + +KK Y GGLV EP++G YD+++++MD
Sbjct: 802 YKNKYICPDKYSSKLQKAEEIAQEGDEDDATDKKKKDKYKGGLVFEPERGLYDRYVLVMD 861
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 862 FNSLYPSIIQEYNICFTTVDRTSSAENENDEKVPEVPASDAEQGILPRLIATLVGRRREV 921
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 922 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 981
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK LVE+ VIYGDTDS+MI+ N++ K+G ++K+ N+ YK LE+DID V++
Sbjct: 982 STKELVESKQLRVIYGDTDSVMINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFR 1041
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--DEQ 755
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ EA + ++++IL D+Q
Sbjct: 1042 RLLLHAKKKYAAINMTEV-DGKYVDKLEVKGLDMKRREYCALSKEASQRLLNEILSGDDQ 1100
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +H++++++ ++ +P+ I +L+K PE
Sbjct: 1101 ELV-------LNRVHDYLRELAGNMREYTIPVQKYVIYTKLSKRPE 1139
Score = 139 bits (350), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 109/191 (57%), Gaps = 16/191 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
R F+LD E G++ LFGKV K+N S++S V V +I RK+Y LPR K
Sbjct: 342 LRFFWLDYTE----VNGSLCLFGKVKNKQNGSYASAFVKVDSILRKLYFLPREYRHKGGR 397
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E DQ+ ++ ++ K + +KYAF +PG+P +EYL++ Y PA
Sbjct: 398 ETDEEVDMEDVYHEVDQMMSRLRVGMHKIKACTRKYAFEMPGIPKEAEYLKLLYPYDKPA 457
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP D G+TFSHVFGT TS E +L + I GP WL+ EA+ + SWCK+E Q
Sbjct: 458 LPMDTKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADFSAVNNASWCKFECQT-- 515
Query: 387 MEKIRSKQGLI 397
SK GLI
Sbjct: 516 -----SKPGLI 521
Score = 47.4 bits (111), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 34/193 (17%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE ++YEEV + Y + + R EDD++ DD G+GY
Sbjct: 6 AKLAELRALRAAGKKRLSTYEVEEQGDIYEEVDDDGYKKIIRNRLDEDDFVVDDNGEGYA 65
Query: 161 EDGREIFDD---------DIEDVP-----QKKEKHDKRKKNKNIQNPNAKDDSLPLATDH 206
+DGRE++++ D +D+P K+++ +++++ + I N +K S A
Sbjct: 66 DDGREVWNEQTGQYSDESDDDDLPARGKAAKRKREEEKQRKEKINNGISKYFSSGAAAPT 125
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC----VIVQNIDRKIYLL- 261
K DAF L G+V +NN S+ V+ RK+ +L
Sbjct: 126 PKPKPVATAEDDAF--------LADLLGEV---DNNVVSNTVPKHNVVKSETRRKVRILS 174
Query: 262 -PRSEHLKTKEPV 273
P SE +T +P
Sbjct: 175 PPLSEKTRTSKPA 187
>gi|344301322|gb|EGW31634.1| hypothetical protein SPAPADRAFT_51626 [Spathaspora passalidarum NRRL
Y-27907]
Length = 1445
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 171/419 (40%), Positives = 258/419 (61%), Gaps = 27/419 (6%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--YGKN 475
+I + +L L+ Q+TN+ GN S TL G R+ RNE++L+H F +Y++PDKQ KN
Sbjct: 728 EIAFAIQILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILVHEFKRNNYIVPDKQDQTHKN 787
Query: 476 KKEGEET------GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
+E +A KK Y GGLV EP+KG + +I++MDFNSLYPSIIQE+
Sbjct: 788 TSYNQEARLENIDDDATTATSNKKPKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEF 847
Query: 530 NICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP 584
NICFTT+ V +D D+ L PE + + G+LP + LV RR+VK L+K P
Sbjct: 848 NICFTTVDRDRFNVSHDEDRDLPVL----PERESEPGVLPRLLNTLVSRRREVKKLLKDP 903
Query: 585 NLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+ QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T+ L E
Sbjct: 904 KNTPFQRAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDTRQLAE 963
Query: 645 NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKK 704
+ V+YGDTDS+MI +++ K+G + K + N+ Y+ LE+DID V+K +LL K
Sbjct: 964 SSGLRVVYGDTDSVMIDTGADNFQHALKVGEEFKIQVNERYRLLEIDIDNVFKRLLLHAK 1023
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
KKYAA+++S + NG S E+KG+D+ RR++ QL+ + FV+ +IL ++ +
Sbjct: 1024 KKYAAMNVS-IKNGVESTSLEVKGLDMRRREYCQLSKDISTFVLMKIL-----SNMDPEQ 1077
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK----APEGGKVCITQIRLSRNRRGR 819
L I+++++ + + + + + +I +L+K P G + Q+ L ++G+
Sbjct: 1078 ALSEIYDYLEDQKNKIISNEILMDKFKINTRLSKDPANYPNGKSMPQVQVALRLRKQGK 1136
Score = 99.8 bits (247), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 19/208 (9%)
Query: 202 LATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLL 261
+ D E+ F+MF+LD E T+ LFGK+ K+ +S V V + R++Y L
Sbjct: 292 IIMDTESTDSFKMFWLDYCE----VDNTLLLFGKILTKDGKL-ASGVVQVNGLCRELYFL 346
Query: 262 PRSEHLKT-----KEPVSIAQVYSEFDQIAT-QYKILDFKSRKIEKKYAFNLPGVPDLSE 315
PR ++ EPV V E I QY + + K++ KYAF L +P +E
Sbjct: 347 PRKYRMENGEENEDEPVGPLDVLDELTPILLEQYNLQELKAKPETMKYAFELAEIPKETE 406
Query: 316 YLEVRYSAKCP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEK 370
YL+V K P +P+++ G+TF+HVFGT + E + +R + GP WL E
Sbjct: 407 YLKVLLPFKTPKNQHMIMPANIEGETFNHVFGTNQNIFEAFVTQRNVMGPCWLTI-EGGD 465
Query: 371 FPS--RISWCKYEVQCNQMEKIRSKQGL 396
F S S C+ EV + +I G+
Sbjct: 466 FHSIQNTSHCQVEVAVDSPSQISVISGV 493
Score = 40.0 bits (92), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 11/79 (13%)
Query: 100 TNKFAAFQKLKDLK-----GQGVK-HKYEFTADENVYEEVSEKEYTERVLKRQE---DDW 150
+++ A QKLK+L+ G+ + + + D +Y+EV E+ Y R KR + DD+
Sbjct: 2 SSRAAKLQKLKELREARKTGRTITTYSDDDDHDGAIYDEVDEETY--RQHKRDQLMNDDF 59
Query: 151 IDDDGGDGYVEDGREIFDD 169
+ DDGG+GYV++G + +DD
Sbjct: 60 VVDDGGEGYVDNGADEWDD 78
>gi|407863071|gb|EKG07865.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma cruzi]
Length = 1335
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 181/405 (44%), Positives = 254/405 (62%), Gaps = 34/405 (8%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
++++ L+ +PL ++T + GN+ SRTL G RSER E+LLLHAFH+ +V PDK+ K
Sbjct: 651 VRVVAFLDAIPLTKRLTTLAGNLWSRTLYGARSERIEYLLLHAFHDLKFVTPDKKRFDGK 710
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ ++ + K +K Y GG+VLEPK G Y +I+L+DFNSLYPS+IQE+NIC+TTI
Sbjct: 711 RGRQDLEDETK----RKTKYQGGMVLEPKSGLYSDYILLLDFNSLYPSLIQEFNICYTTI 766
Query: 537 -------------PVRMLQDSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKALM 581
P R+ I T C LP +LP I+ LVESRR++K LM
Sbjct: 767 ERDENTVSAEIPPPERL-----ICTSCAAAGLPSPCSHKCVLPKVIRGLVESRREIKRLM 821
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K S+L +IRQK+LKLTANSMYGCLGF +SRF+AQPLA LVT +GR L NT
Sbjct: 822 KTEKDPSNL-ATLEIRQKSLKLTANSMYGCLGFEHSRFYAQPLAELVTRQGRIALQNTVE 880
Query: 642 LVENLN--YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
L+ ++ VIYGDTDS+MI + +D V ++G +IK++ N+ Y+ LELDIDGV++
Sbjct: 881 LIPQISPLLRVIYGDTDSVMIQTGIKDDISKVRELGFEIKNKVNQRYQSLELDIDGVFRA 940
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
MLLLKKKKYAALS+ + +E+KG+D+VRRDW L+ + + V+S++L+ ++
Sbjct: 941 MLLLKKKKYAALSVVDWQSDGKTYKKEVKGLDMVRRDWCPLSQKVSEAVLSRVLNAEAG- 999
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNG-FVPLTLLEITKQLTKAPEG 802
+D L + HMK + + G + L I+K LTK PE
Sbjct: 1000 ----EDILDYVMTHMKTVADHVRAGNYYGLEDFVISKSLTKEPES 1040
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 97/186 (52%), Gaps = 18/186 (9%)
Query: 214 MFFLDAFEDIY--KQPGTVYLFGKVFVK--ENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 269
++ DA E + +PGT++LFGK + K E S SSCCV V+N+ R +LLPR
Sbjct: 239 FYWFDAKEQPHTLSEPGTIFLFGKFYEKKREKLSFSSCCVHVKNVYRCTFLLPR------ 292
Query: 270 KEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPAL 328
E S ++ E + + ++ I + + R +E+ YAF PG+ + + + ++ + K P
Sbjct: 293 -EGSSDTEIIKEINDVCQKHGIGERRIRFVERYYAFEEPGIRREKNRWAKLLFPGKYPGF 351
Query: 329 PSDLSGDTFSH---VFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 385
P + G+ F H V G S +E L+++K+ GPS+L R+S C+ E +
Sbjct: 352 P--IMGE-FKHIRAVMGASRSLIELFLIKKKLMGPSYLSMENFFPATDRLSHCELEFVVD 408
Query: 386 QMEKIR 391
+ I+
Sbjct: 409 SPKNIK 414
>gi|296412426|ref|XP_002835925.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629722|emb|CAZ80082.1| unnamed protein product [Tuber melanosporum]
Length = 1451
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 185/435 (42%), Positives = 260/435 (59%), Gaps = 48/435 (11%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++K + +I I ++ ++PLA Q+TN+ GN +RT+ G R+ERNE++LLH F
Sbjct: 750 GLLDYVKHCEADTYFIAAIALKIQIVPLAKQLTNLAGNSWARTMSGTRAERNEYILLHEF 809
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKG---------RKKAAYSGGLVLEPKKGFYDK 511
+ Y+ PDK YGK G T +A+ +KK Y GGLV EP+KG YDK
Sbjct: 810 YRNKYICPDKVYGK----GNTTQKADGAGNEGENEGGGVKKKEKYKGGLVFEPEKGLYDK 865
Query: 512 FIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
FI++MDFNSLYPSIIQE+NICFTT+ +D +PE QV GILP I LV
Sbjct: 866 FILVMDFNSLYPSIIQEFNICFTTVK----RDDSGEEKVPDVPETQV-LGILPRLISTLV 920
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
+ RR VK LMK + Q+DI+Q+ALKLTANSMYGCLG+P SRF+A+PLA L T K
Sbjct: 921 QRRRIVKNLMKDKTATDVQKSQWDIKQQALKLTANSMYGCLGYPRSRFYARPLAMLTTHK 980
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREIL +TK L E ++ +VIYGDTDS+MI+ V++Y KIG K + N+ YK LE+D
Sbjct: 981 GREILRSTKELAEAIDLQVIYGDTDSVMINTGVDNYADAIKIGTDFKRKVNEQYKLLEID 1040
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
ID V++ +LL KKKYAA++ ++ NGK+ E L+ +A ++++I
Sbjct: 1041 IDNVFQRLLLHAKKKYAAINYVEI-NGKLATKLE-------------LSKDASSHILAEI 1086
Query: 752 LDEQSYTDYSLDDR---LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA-PEGGKVCI 807
+S DD ++ IHE+++ + + PL I +L K+ E G
Sbjct: 1087 --------FSGDDTEVVVERIHEYLRGLAEKVRENAFPLMKYIIYTKLGKSLDEYGTSLQ 1138
Query: 808 T----QIRLSRNRRG 818
T Q+ L +N RG
Sbjct: 1139 TMPQVQVALRKNARG 1153
Score = 120 bits (301), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 107/194 (55%), Gaps = 11/194 (5%)
Query: 205 DHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS 264
D E +MF+LD + +++ G++ LFGKV K++ + S + + I R +Y LPR
Sbjct: 344 DVEEDGFIKMFWLD-YTEVH---GSLCLFGKVQDKKSGKYVSAFLKIDGILRNLYFLPRE 399
Query: 265 EH----LKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVR 320
L T E V++ V+ E +I + I FK++ ++YAF LPG+P S+YL+V
Sbjct: 400 TRYKNKLDTGEIVAMQDVHDEIAEIMEHHGINFFKAKPSWRRYAFELPGIPKGSDYLKVL 459
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWC 378
Y P +L+G TFS VFGT T+ E +L R I GP WL+ E F + SWC
Sbjct: 460 YPYTKPPFSHELTGQTFSCVFGTSTALFEQFVLCRNIMGPCWLKI-EGANFTAVENSSWC 518
Query: 379 KYEVQCNQMEKIRS 392
K E+Q + +++ +
Sbjct: 519 KLEIQVAEPQQVTT 532
>gi|255950462|ref|XP_002565998.1| Pc22g21010 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593015|emb|CAP99389.1| Pc22g21010 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1461
Score = 310 bits (795), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 251/404 (62%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + ++ ++ L +LPL +TN GN +RTL G R+ERNE++LLH F
Sbjct: 745 GLMNFVNHCDTDTYFVAALVLRLQMLPLTKVLTNTAGNSWARTLSGTRAERNEYILLHEF 804
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYS---GGLVLEPKKGFYDKFIILMD 517
H Y+ PDK + +K E+ + + + K GGLV EP+KG YD+F+++MD
Sbjct: 805 HRNKYICPDKYSSRLQKAEEKMQDGDDDEALDKKKKDKFKGGLVFEPEKGLYDRFVLVMD 864
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + + G+LP I LV RR+V
Sbjct: 865 FNSLYPSIIQEYNICFTTVDRTATAENENEEKVPDVPSSEQEQGVLPRLIATLVNRRREV 924
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 925 KKLMKDKRATPEQLAIWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 984
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
NTK L E+ VIYGDTDS+MI+ N+++ K+G + K N+ Y+ LE+DID +++
Sbjct: 985 NTKELAESQQLRVIYGDTDSVMINTNMDNMSDAIKVGEEFKKSVNERYRLLEIDIDNIFR 1044
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++++IL +
Sbjct: 1045 RLLLHAKKKYAAVNLTEV-DGKYVEKLEVKGLDMKRREYCSLSKEVSSKLLNEILSGEDQ 1103
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L IHE+++++ + +P+ I +L+K P+
Sbjct: 1104 -----EVVLNKIHEYLRELAGRMKEYTIPVQKYVIYTKLSKRPQ 1142
Score = 139 bits (350), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 81/199 (40%), Positives = 115/199 (57%), Gaps = 16/199 (8%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ R+F+LD E G++ LFGKV K+N S++S V V NI RK+Y LPR
Sbjct: 340 EDDGSLRIFWLDYTE----VNGSLCLFGKVKNKQNGSYTSAFVKVDNILRKLYFLPREYR 395
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
K T+E V + VYSE D++ ++ K+ K + E+KYAF +PGVP +EYL++ Y
Sbjct: 396 YKHGRATEEEVGMQDVYSEVDEMMSKLKVGMHKMKPCERKYAFEMPGVPKEAEYLKLLYP 455
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYE 381
ALP + G+TFS+VFGT TS E +L + I GP WL+ +A+ + SWCK+E
Sbjct: 456 YDKAALPMETKGETFSNVFGTNTSLFEQFVLWKNIMGPCWLKIDQADFAAVTNASWCKFE 515
Query: 382 VQCNQMEKIRSKQGLIYLI 400
Q +K LI L+
Sbjct: 516 CQA-------TKPALISLV 527
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 106 FQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVED 162
+L+ L+ G K YE ++Y+EV + Y + + R +DD++ DD G GY +D
Sbjct: 8 LAELRALRASGKKRISTYEVEDQGDIYDEVDDDGYKKVIRNRLDQDDFVVDDNGAGYADD 67
Query: 163 GREIFDD 169
GRE++++
Sbjct: 68 GREVWNE 74
>gi|32329589|gb|AAP45772.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
Length = 1514
Score = 310 bits (794), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 194/430 (45%), Positives = 264/430 (61%), Gaps = 40/430 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I + I+ + S Y +M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 772 IFQLIEHSEKDSYYTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 831
Query: 462 EKSYVLPDKQ-----------YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+K ++LPDK+ G +E + G KG RKKA Y+GGLV+EPK GFYD
Sbjct: 832 KKKFILPDKKPPNAKDLRRGFMGDEYEENDTKGGGKKGGKRKKAKYAGGLVIEPKAGFYD 891
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEY----------------LP 554
I+L+DFNSLYPSIIQEYN CFTT+ R ++ D + L LP
Sbjct: 892 NIILLLDFNSLYPSIIQEYNXCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDLP 951
Query: 555 EHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 612
+ V+ +LP+ ++ LV+ R+ VK MK L Q +IRQKA+KLTANSMYGCL
Sbjct: 952 DKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEK-DQVKLQQLEIRQKAIKLTANSMYGCL 1010
Query: 613 GFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVF 671
GF +SRF A +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ N
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070
Query: 672 KIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDV 731
++G ++K E N LYK LE++IDGV+K +LLLKKKKYAAL + + ++ QE+KG+D+
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLDM 1130
Query: 732 VRRDWSQLASEAGKFVISQILDEQSYTD--YSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
VRRDW L+ G +V+SQIL + D ++L++ L +I E MK R LD F+
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQ-FI---- 1185
Query: 790 LEITKQLTKA 799
ITKQLT+A
Sbjct: 1186 --ITKQLTRA 1193
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 176 QKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 235
Q ++ H + K + + ++ +LPL D +++DA E+ +++FGK
Sbjct: 332 QNQQAHQEFKTMEQKSAMDIQEFALPLNQDGS----LSFYWIDAHEE--NNGADLFIFGK 385
Query: 236 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS-------IAQVYSEFDQIATQ 288
++ E N + SC + V + R+IY LP+ + K + ++ + V E + I +
Sbjct: 386 IYQPEINQYVSCSMKVNGMQREIYALPKMQKGKARGTLTREEENQLVRGVQLELEDIRKK 445
Query: 289 --YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTS 346
I ++ + + +KYAF +P +L+++Y A LPS + G+TF +FG+ S
Sbjct: 446 RFQGITKWRCKPVTRKYAFEMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQS 505
Query: 347 FLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCN 385
LE +L+RKIKGP W+ +K + +WC+ E++ +
Sbjct: 506 MLELFILKRKIKGPCWMTIKNPKKVTDFKKTWCRQEIEID 545
Score = 39.7 bits (91), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 120 KYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFD-DDIEDVPQKK 178
+Y+ + ++EE+ EY +R+ DD+I DD G GY + G EI++ DD E+V KK
Sbjct: 42 QYQVEEAKRIFEEIDADEYERIQDQRKNDDFIVDDDGFGYRDHGGEIWERDDNEEVGGKK 101
Query: 179 EKHDKRKKNKNIQNPNAKDDSLPLATDHENK 209
+ KRK + N Q + + +P +T +NK
Sbjct: 102 K---KRKLDPNEQ--HITNFMMPASTIRKNK 127
>gi|71841808|gb|AAZ43187.1| DNA polymerase alpha [Euplotes octocarinatus]
Length = 1403
Score = 309 bits (792), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 183/410 (44%), Positives = 266/410 (64%), Gaps = 25/410 (6%)
Query: 409 TMLHS----SYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS 464
T+LH+ ++ I+++ +L+++PL Q+TN+ GN+ R+L R+ERNE+LLLH F+ +
Sbjct: 675 TILHTEKDANFTIQLLFKLSIIPLTKQLTNIAGNLWYRSLQNARAERNEWLLLHEFNRNN 734
Query: 465 YVLPDKQYGK----NKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
++ PDK+ K + E ++ E K RKKAAY GGLVL+PK G YDK ++L+DFNS
Sbjct: 735 FICPDKELNKKPTKDHDEDKDEEEEEKHGKRKKAAYEGGLVLDPKPGLYDKIVLLLDFNS 794
Query: 521 LYPSIIQEYNICFTTI--------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVE 572
LYPSIIQEYN+CFTT+ R + D+ I + + + + ILPS +K LV+
Sbjct: 795 LYPSIIQEYNLCFTTVERCVTHDFDGREISDAKIDEVDVPVYDQKQGPAILPSILKMLVQ 854
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
+RR VK MK L Q +I+QKA+KLTANSMYGCLGF +SRF+A+ +AAL+T KG
Sbjct: 855 ARRAVKDQMKXEK-DKGKLDQLEIKQKAIKLTANSMYGCLGFSSSRFYAKAIAALITRKG 913
Query: 633 REILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
R+ L T + N LNY V+YGDTDS+M+S N+ +IG+QIK E NK YK LE++
Sbjct: 914 RDALKATYDITTNVLNYNVVYGDTDSIMVSTGSNNLKEAIQIGDQIKKEVNKKYKNLEIE 973
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+DGV++ +LLLKKKKYAAL + L++ +E+KG+D+VRRDW L+ G V+ +I
Sbjct: 974 LDGVFRSLLLLKKKKYAALVYTDLNDPNSFSKREVKGLDMVRRDWCPLSKAIGNQVLKEI 1033
Query: 752 LDEQSYTDYSLDDRLQ-NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
L ++ D +Q N+ + ++ L N + ++ ITKQLT+AP
Sbjct: 1034 LSSKN------QDEIQINLRAYFTEMAEKLKNNEITMSNFIITKQLTRAP 1077
Score = 115 bits (289), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 106/205 (51%), Gaps = 15/205 (7%)
Query: 182 DKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKEN 241
D N N + +D LPL + +N +F+LD E+ Q VYLFGKV+
Sbjct: 250 DNEPNNTESVNISREDKKLPLPLNSDN--TLSVFWLDGHEESINQ-SEVYLFGKVYNPTY 306
Query: 242 NSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQ--YKILDFKSRKI 299
+SS C++V+ I+R +Y +P KE I V SE ++ I +K++ I
Sbjct: 307 KRYSSICLVVRGINRIMYCVP-------KEEFEIKDVLSEISKLFDDRFKSIKKWKTKPI 359
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKG 359
K Y F P SE LE+RYS + LP++L+G TF H+FG TS LE L+++ K+ G
Sbjct: 360 SKNYCFETPMKKGQSEVLEIRYSTEYQQLPANLTGKTFHHIFGKNTSALELLIIQLKLMG 419
Query: 360 PSWLEF--PEAEKFPSRISWCKYEV 382
P WL P+ R SWC YE+
Sbjct: 420 PCWLTVKNPKINTQNKR-SWCDYEI 443
>gi|71661998|ref|XP_818012.1| DNA polymerase I alpha catalytic subunit [Trypanosoma cruzi strain CL
Brener]
gi|70883238|gb|EAN96161.1| DNA polymerase I alpha catalytic subunit, putative [Trypanosoma
cruzi]
Length = 1335
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 182/408 (44%), Positives = 255/408 (62%), Gaps = 40/408 (9%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
++++ L+ +PL ++T + GN+ SRTL G RSER E+LLLHAFH+ +V PDK+ K
Sbjct: 651 VRVVAFLDAIPLTKRLTTLAGNLWSRTLYGARSERIEYLLLHAFHDLKFVTPDKKRFDGK 710
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ ++ + K +K Y GG+VLEPK G Y +I+L+DFNSLYPS+IQE+NIC+TTI
Sbjct: 711 RGRQDLEDETK----RKTKYQGGMVLEPKSGLYSDYILLLDFNSLYPSLIQEFNICYTTI 766
Query: 537 -------------PVRMLQDSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKALM 581
P R+ I T C LP +LP I+ LVESRR++K LM
Sbjct: 767 ERDENTVSAEIPPPERL-----ICTSCAAAGLPSPCSHKCVLPKVIRGLVESRREIKRLM 821
Query: 582 KQ---PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
K PN + L +IRQ++LKLTANSMYGCLGF +SRF+AQPLA LVT +GR L N
Sbjct: 822 KTEKDPNNLATL----EIRQRSLKLTANSMYGCLGFEHSRFYAQPLAELVTRQGRIALQN 877
Query: 639 TKSLVENLN--YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGV 695
T L+ ++ VIYGDTDS+MI + +D V ++G +IK++ N+ Y+ LELDIDGV
Sbjct: 878 TVELIPQISPLLRVIYGDTDSVMIQTGIKDDIRKVRELGFEIKNKVNQRYQSLELDIDGV 937
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
++ MLLLKKKKYAALS+ N +E+KG+D+VRRDW L+ + + V+S++L+ +
Sbjct: 938 FRAMLLLKKKKYAALSVVDWQNDGKTYKKEVKGLDMVRRDWCPLSQKVSEAVLSRVLNAE 997
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNG-FVPLTLLEITKQLTKAPEG 802
+ +D L + HMK + + G + L I+K LTK PE
Sbjct: 998 AG-----EDILDYVMTHMKTVSDHVRAGNYYGLEDFVISKSLTKEPES 1040
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 26/190 (13%)
Query: 214 MFFLDAFEDIY--KQPGTVYLFGKVFVK--ENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 269
++ DA E + +PGT++LFGK + K E S SSCCV V+N+ R +LLPR
Sbjct: 239 FYWFDAKEQPHTLSEPGTIFLFGKFYEKKREKVSFSSCCVRVKNVYRCTFLLPR------ 292
Query: 270 KEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPAL 328
E S ++ E + + ++ I + + R +E+ YAF PG+ + + + ++R+ K P
Sbjct: 293 -EGSSDTEIIKEINDVCQKHGIGERRIRFVERYYAFEEPGIRREKNRWAKLRFPGKYPGF 351
Query: 329 PSDLSGDTFSH---VFGTKTSFLENLLLERKIKGPSWLE----FPEAEKFPSRISWCKYE 381
P + G+ F H V G S +E L+++K+ GPS+L FP E R+S C+ E
Sbjct: 352 P--IMGE-FKHIRAVMGASRSLIELFLIKKKLMGPSYLSMENFFPATE----RLSHCELE 404
Query: 382 VQCNQMEKIR 391
+ + I+
Sbjct: 405 FVVDSPKNIK 414
>gi|401418706|ref|XP_003873844.1| DNA polymerase I alpha catalytic subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322490076|emb|CBZ25338.1| DNA polymerase I alpha catalytic subunit,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1340
Score = 309 bits (791), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 181/399 (45%), Positives = 256/399 (64%), Gaps = 27/399 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ K
Sbjct: 658 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFKR 716
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E GK +KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 717 GRDDDEEEDGK--RKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 774
Query: 539 RMLQDSDITT----LC-----EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C E L + +LP IK LV+SRR+VK LMK +++
Sbjct: 775 ENRSEIDVPPPENLICASCAAEGLSAPCLHKSVLPKVIKSLVDSRREVKRLMKTEKDANN 834
Query: 590 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN-- 647
L + +IRQKALKLTANSMYGCLGF +SRF AQPLA LVT +GR L +T L+ LN
Sbjct: 835 LAL-LEIRQKALKLTANSMYGCLGFEHSRFHAQPLAELVTRQGRLALQSTVDLIPQLNPS 893
Query: 648 YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
VIYGDTDS+MI + ND +V +G +K++ NK Y+ LE+DIDGV++ +LLLKKKK
Sbjct: 894 LRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDIDGVFRAILLLKKKK 953
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD---EQSYTDYSLD 763
YAAL+++ +E+KG+D+VRRDW L+ V+S++L+ + DY +
Sbjct: 954 YAALTVTDWQGEGKTYKKEVKGLDMVRRDWCPLSKCVCDAVLSRVLNAEGSEDILDYVM- 1012
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ ++++ E ++ R LDN FV I+K LTK PE
Sbjct: 1013 NYMRDVAEQVRAGRYTLDN-FV------ISKSLTKEPEA 1044
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 107/202 (52%), Gaps = 21/202 (10%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYK---QPGTVYLFGKVFVKEN--NSHSSCCVIVQN 253
++P ++ + +F ++ DA E + PG+++LFGK+ V++N S+ SCCV V+N
Sbjct: 230 AVPYKSEEMTEGLF--YWFDAREQPHTLSVDPGSLFLFGKMAVEKNGRTSYLSCCVRVRN 287
Query: 254 IDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-D 312
+ R I++LP++ S V E + I I + + +E+ YAF +PGVP +
Sbjct: 288 MYRSIFVLPKAGS-------SQQDVVKEINDICRNQGIEQRRIKFVERYYAFEVPGVPHE 340
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVF---GTKTSFLENLLLERKIKGPSWLEFPEAE 369
+++ ++RY + P P + G F H+ G +S LE L++RK+KGP++L
Sbjct: 341 KTQWAKLRYPGRYP--PLNAKG-PFRHILIIMGASSSLLELFLIKRKLKGPNFLRISGLV 397
Query: 370 KFPSRISWCKYEVQCNQMEKIR 391
+RIS C E + +R
Sbjct: 398 ASANRISHCALEFSVESPKNLR 419
>gi|154335031|ref|XP_001563762.1| putative DNA polymerase I alpha catalytic subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134060784|emb|CAM37799.1| putative DNA polymerase I alpha catalytic subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1341
Score = 309 bits (791), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 176/396 (44%), Positives = 251/396 (63%), Gaps = 22/396 (5%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ K
Sbjct: 660 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFKR 718
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 719 GRDDDEED---GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 775
Query: 539 RMLQDSDITT----LCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 776 ENRSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKTEKDANN 835
Query: 590 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN-- 647
L + +IRQKALKLTANSMYGCLGF SRF AQPLA LVT +GR L +T L+ LN
Sbjct: 836 LAL-LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLALQSTVDLIPQLNPS 894
Query: 648 YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
VIYGDTDS+MI + ND +V +G +K++ NK Y+ LE+DIDGV++ +LLLKKKK
Sbjct: 895 LRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDIDGVFRAILLLKKKK 954
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 766
YAAL+++ + +E+KG+D+VRRDW L+ V+S++L+ + +D L
Sbjct: 955 YAALTVTDWQDEGKTYKKEVKGLDMVRRDWCPLSKRVSDSVLSRVLNAEGS-----EDIL 1009
Query: 767 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ +M+ + + NG L I+K LTK PE
Sbjct: 1010 DYVMNYMRDVAGQVRNGCYTLDDFVISKSLTKEPEA 1045
Score = 87.8 bits (216), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/184 (31%), Positives = 94/184 (51%), Gaps = 13/184 (7%)
Query: 214 MFFLDAFEDIYK---QPGTVYLFGKVFVKEN--NSHSSCCVIVQNIDRKIYLLPRSEHLK 268
++ DA E + PG+++LFGK+ +++N S+ SCCV V+N+ R I+LLPR L+
Sbjct: 245 FYWFDAREQPHTLSVDPGSLFLFGKMVMEKNGRTSYPSCCVRVRNMYRSIFLLPREGSLQ 304
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPA 327
V E + I I + + +E+ YAF PGVP + + + ++RY + P
Sbjct: 305 E-------DVVKEINDICRNQGIEQRRIKFVERYYAFEEPGVPYEKTRWAKLRYPGRYPP 357
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQM 387
L + + G +S LE L++RK+KGPS+L S IS C E +
Sbjct: 358 LNAKGPLRHIQTIMGASSSLLELFLIKRKLKGPSFLRISGLAASASHISHCTLEFSVDSP 417
Query: 388 EKIR 391
+ +R
Sbjct: 418 KNLR 421
>gi|239615018|gb|EEQ92005.1| DNA polymerase alpha catalytic subunit [Ajellomyces dermatitidis
ER-3]
gi|327357152|gb|EGE86009.1| DNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1458
Score = 308 bits (790), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 255/403 (63%), Gaps = 10/403 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ +I + +I ++ +L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 744 GLMNYISHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGG--LVLEPKKGFYDKFIILMDF 518
+ Y+ PDK YG +++ + E ++ KK LV P+KG YDK+I++MDF
Sbjct: 804 YRNKYICPDK-YGGKQQQMSQANEEDEDGADKKKKDKYKGGLVFPPEKGLYDKYILVMDF 862
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQE+NICFTT+ + +++ +P +Q GILP I LV RR+VK
Sbjct: 863 NSLYPSIIQEFNICFTTVDRAAVVENENEEKVPKVPSNQ-SPGILPRLIATLVNRRREVK 921
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
LMK S + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T+KGREIL +
Sbjct: 922 KLMKDKRASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTSKGREILRS 981
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK L EN +VIYGDTDS+MI+ N ++ + K+GN K N+ Y+ LE+DID V++
Sbjct: 982 TKELAENNQLQVIYGDTDSVMINTNTDNMEDALKVGNTFKRLVNERYQLLEIDIDSVFRR 1041
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++++IL +
Sbjct: 1042 LLLHAKKKYAAMTMTEI-DGKYVDQLEVKGLDMKRREYCALSKEVSSKLLNEILSGE--- 1097
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L +H+++++I + +P+ I +L+K P+
Sbjct: 1098 --DPDMVLTKVHDYLREITEKMKEYTIPVQKYVIYTKLSKRPD 1138
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 111/197 (56%), Gaps = 11/197 (5%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 258
+ P A + + +F F+LD E G++ LFGKV K+ + S V NI RK+
Sbjct: 333 AAPSAVEEDGSLLF--FWLDYVE----INGSLCLFGKVKNKDTGDYVSAFAKVDNILRKL 386
Query: 259 YLLPRSEHLK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLS 314
Y LPR ++ T+E + + VY E D + ++ K+ K +++ +KYAF LP VP
Sbjct: 387 YFLPRKYRVRHGHETEEEIDMEDVYKEVDALLSRTKVGTHKIKEVTRKYAFELPDVPKEG 446
Query: 315 EYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPS 373
EYL++ YS PALP D+ G+TFS VFG T+ E +L + I GP WL+F +A+ +
Sbjct: 447 EYLKLMYSYDKPALPIDVKGETFSRVFGINTALFEQFVLWKNIMGPCWLKFEDADFTAVN 506
Query: 374 RISWCKYEVQCNQMEKI 390
SWCK E Q ++ + I
Sbjct: 507 GASWCKLECQVSEPKLI 523
Score = 46.2 bits (108), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 34/152 (22%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE + ++Y+E+ E+ Y + V KR +DD++ DD G+GY
Sbjct: 6 AKLAELRALRAAGKKRLTTYEVEDEGDIYDEIDEEGYKKLVRKRLDQDDFVIDDTGEGYA 65
Query: 161 EDGREIFDD--------DIEDVP------QKKEKHDKRKKNKNIQN---------PNAKD 197
+DGRE ++D D +++P ++K + D+++K K I N P AK
Sbjct: 66 DDGREEWNDSKQYYSDSDGDELPLRGKAAKRKREEDQQRKEK-INNGISKYFNTGPAAKA 124
Query: 198 DS--LPLATDHENKKVFRMFFLDAFEDIYKQP 227
S P+AT + F D E++ P
Sbjct: 125 PSKPKPVATAEDEA-----FLADLLEEVDSNP 151
>gi|261188006|ref|XP_002620420.1| DNA polymerase alpha catalytic subunit [Ajellomyces dermatitidis
SLH14081]
gi|239593431|gb|EEQ76012.1| DNA polymerase alpha catalytic subunit [Ajellomyces dermatitidis
SLH14081]
Length = 1458
Score = 308 bits (790), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 255/403 (63%), Gaps = 10/403 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ +I + +I ++ +L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 744 GLMNYISHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGG--LVLEPKKGFYDKFIILMDF 518
+ Y+ PDK YG +++ + E ++ KK LV P+KG YDK+I++MDF
Sbjct: 804 YRNKYICPDK-YGGKQQQMSQANEEDEDGADKKKKDKYKGGLVFPPEKGLYDKYILVMDF 862
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQE+NICFTT+ + +++ +P +Q GILP I LV RR+VK
Sbjct: 863 NSLYPSIIQEFNICFTTVDRAAVVENENEEKVPKVPSNQ-SPGILPRLIATLVNRRREVK 921
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
LMK S + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T+KGREIL +
Sbjct: 922 KLMKDKRASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTSKGREILRS 981
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK L EN +VIYGDTDS+MI+ N ++ + K+GN K N+ Y+ LE+DID V++
Sbjct: 982 TKELAENNQLQVIYGDTDSVMINTNTDNMEDALKVGNTFKRLVNERYQLLEIDIDSVFRR 1041
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++++IL +
Sbjct: 1042 LLLHAKKKYAAMTMTEI-DGKYVDQLEVKGLDMKRREYCALSKEVSSKLLNEILSGE--- 1097
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L +H+++++I + +P+ I +L+K P+
Sbjct: 1098 --DPDMVLTKVHDYLREITEKMKEYTIPVQKYVIYTKLSKRPD 1138
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 111/197 (56%), Gaps = 11/197 (5%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 258
+ P A + + +F F+LD E G++ LFGKV K+ + S V NI RK+
Sbjct: 333 AAPSAVEEDGSLLF--FWLDYVE----INGSLCLFGKVKNKDTGDYVSAFAKVDNILRKL 386
Query: 259 YLLPRSEHLK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLS 314
Y LPR ++ T+E + + VY E D + ++ K+ K +++ +KYAF LP VP
Sbjct: 387 YFLPRKYRVRHGHETEEEIDMEDVYKEVDALLSRTKVGTHKIKEVTRKYAFELPDVPKEG 446
Query: 315 EYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPS 373
EYL++ YS PALP D+ G+TFS VFG T+ E +L + I GP WL+F +A+ +
Sbjct: 447 EYLKLMYSYDKPALPIDVKGETFSRVFGINTALFEQFVLWKNIMGPCWLKFEDADFTAVN 506
Query: 374 RISWCKYEVQCNQMEKI 390
SWCK E Q ++ + I
Sbjct: 507 GASWCKLECQVSEPKLI 523
Score = 46.2 bits (108), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 34/152 (22%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE + ++Y+E+ E+ Y + V KR +DD++ DD G+GY
Sbjct: 6 AKLAELRALRAAGKKRLTTYEVEDEGDIYDEIDEEGYKKLVRKRLDQDDFVIDDTGEGYA 65
Query: 161 EDGREIFDD--------DIEDVP------QKKEKHDKRKKNKNIQN---------PNAKD 197
+DGRE ++D D +++P ++K + D+++K K I N P AK
Sbjct: 66 DDGREEWNDSKQYYSDSDGDELPLRGKAAKRKREEDQQRKEK-INNGISKYFNTGPAAKA 124
Query: 198 DS--LPLATDHENKKVFRMFFLDAFEDIYKQP 227
S P+AT + F D E++ P
Sbjct: 125 PSKPKPVATAEDEA-----FLADLLEEVDSNP 151
>gi|425771140|gb|EKV09593.1| DNA polymerase [Penicillium digitatum Pd1]
gi|425776664|gb|EKV14872.1| DNA polymerase [Penicillium digitatum PHI26]
Length = 1460
Score = 308 bits (790), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 250/404 (61%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ L +LPL +TN GN +RTL G R+ERNE++LLH F
Sbjct: 744 GLMNFVNHCDTDTYFIAALVLRLQMLPLTKVLTNTAGNSWARTLSGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYS---GGLVLEPKKGFYDKFIILMD 517
H Y+ PDK + +K ++ + + + K GGLV EP+ G YD+F+++MD
Sbjct: 804 HRNKYICPDKYSSRLQKTEDKMQDGDDDEAVDKKKKDKYKGGLVFEPETGLYDRFVLVMD 863
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ + +++ +P + G+LP I LV RR+V
Sbjct: 864 FNSLYPSIIQEYNICFTTVDRTAMAENENEENVPDVPSSDQEQGVLPRLIATLVSRRREV 923
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 924 KKLMKDKRATPEQLAIWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 983
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
NTK L E+ VIYGDTDS+MI+ N+++ K+G + K N+ Y+ LE+DID +++
Sbjct: 984 NTKELAESQQLRVIYGDTDSVMINTNMDNMSDAIKVGEEFKKSVNERYRLLEIDIDNIFR 1043
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++++IL +
Sbjct: 1044 RLLLHAKKKYAAVNLTEV-DGKYVEKLEVKGLDMKRREYCALSKEVSSKLLNEILSGEDQ 1102
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L IHE+++++ + +P+ I +L+K P+
Sbjct: 1103 -----EVVLNKIHEYLRELAERMKEYTIPVQKYVIYTKLSKRPQ 1141
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/199 (39%), Positives = 113/199 (56%), Gaps = 16/199 (8%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ R+F+LD E G++ LFGKV K+N S +S V V NI RK+Y LPR
Sbjct: 339 EDDGSLRIFWLDYTE----VNGSLCLFGKVKNKQNGSFTSAFVKVDNILRKLYFLPREYR 394
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
+ T+E V + VYSE D++ ++ K+ K + E+KYAF +PGVP +EYL++ Y
Sbjct: 395 HRHGRPTEEEVDMQDVYSEVDEMMSKLKVGMHKMKPCERKYAFEIPGVPKEAEYLKLLYP 454
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYE 381
ALP + G+TFS+VFGT TS E +L + I GP WL +A+ + SWCK+E
Sbjct: 455 YDKAALPMETKGETFSNVFGTNTSLFEQFVLWKNIMGPCWLRVDQADFAAVTNASWCKFE 514
Query: 382 VQCNQMEKIRSKQGLIYLI 400
+ +K LI L+
Sbjct: 515 CRA-------AKPALISLV 526
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 106 FQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVED 162
+L+ L+ G K YE ++Y+EV + Y + + R +DD++ DD G GY +D
Sbjct: 8 LAELRALRASGKKRISTYEVEDQGDIYDEVDDDGYKKVIRNRLDQDDFVVDDNGAGYADD 67
Query: 163 GREIFDD 169
GRE++++
Sbjct: 68 GREVWNE 74
>gi|67539524|ref|XP_663536.1| hypothetical protein AN5932.2 [Aspergillus nidulans FGSC A4]
gi|40738605|gb|EAA57795.1| hypothetical protein AN5932.2 [Aspergillus nidulans FGSC A4]
Length = 2019
Score = 308 bits (789), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 169/406 (41%), Positives = 259/406 (63%), Gaps = 13/406 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+V F+ + +I ++ +L +L L +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 742 GLVNFVTHCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 801
Query: 461 HEKSYVLPDKQYGKNKKE---GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
++ Y+ PDK K +K +E E + +KK Y GGLV EP++G YD+++++MD
Sbjct: 802 YKNKYICPDKYSSKLQKAEEIAQEGDEDDATDKKKKDKYKGGLVFEPERGLYDRYVLVMD 861
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 862 FNSLYPSIIQEYNICFTTVDRTSSAENENDEKVPEVPASDAEQGILPRLIATLVGRRREV 921
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 922 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 981
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK LVE+ VIYGDTDS+MI+ N++ K+G ++K+ N+ YK LE+DID V++
Sbjct: 982 STKELVESKQLRVIYGDTDSVMINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFR 1041
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--DEQ 755
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ EA + ++++IL D+Q
Sbjct: 1042 RLLLHAKKKYAAINMTEV-DGKYVDKLEVKGLDMKRREYCALSKEASQRLLNEILSGDDQ 1100
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +H++++++ ++ +P+ I +L+K PE
Sbjct: 1101 ELV-------LNRVHDYLRELAGNMREYTIPVQKYVIYTKLSKRPE 1139
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 109/191 (57%), Gaps = 16/191 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
R F+LD E G++ LFGKV K+N S++S V V +I RK+Y LPR K
Sbjct: 342 LRFFWLDYTE----VNGSLCLFGKVKNKQNGSYASAFVKVDSILRKLYFLPREYRHKGGR 397
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E DQ+ ++ ++ K + +KYAF +PG+P +EYL++ Y PA
Sbjct: 398 ETDEEVDMEDVYHEVDQMMSRLRVGMHKIKACTRKYAFEMPGIPKEAEYLKLLYPYDKPA 457
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP D G+TFSHVFGT TS E +L + I GP WL+ EA+ + SWCK+E Q
Sbjct: 458 LPMDTKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADFSAVNNASWCKFECQT-- 515
Query: 387 MEKIRSKQGLI 397
SK GLI
Sbjct: 516 -----SKPGLI 521
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 34/193 (17%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE ++YEEV + Y + + R EDD++ DD G+GY
Sbjct: 6 AKLAELRALRAAGKKRLSTYEVEEQGDIYEEVDDDGYKKIIRNRLDEDDFVVDDNGEGYA 65
Query: 161 EDGREIFDD---------DIEDVP-----QKKEKHDKRKKNKNIQNPNAKDDSLPLATDH 206
+DGRE++++ D +D+P K+++ +++++ + I N +K S A
Sbjct: 66 DDGREVWNEQTGQYSDESDDDDLPARGKAAKRKREEEKQRKEKINNGISKYFSSGAAAPT 125
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC----VIVQNIDRKIYLL- 261
K DAF L G+V +NN S+ V+ RK+ +L
Sbjct: 126 PKPKPVATAEDDAF--------LADLLGEV---DNNVVSNTVPKHNVVKSETRRKVRILS 174
Query: 262 -PRSEHLKTKEPV 273
P SE +T +P
Sbjct: 175 PPLSEKTRTSKPA 187
>gi|72393035|ref|XP_847318.1| DNA polymerase alpha catalytic subunit [Trypanosoma brucei TREU927]
gi|62176493|gb|AAX70600.1| DNA polymerase alpha catalytic subunit [Trypanosoma brucei]
gi|70803348|gb|AAZ13252.1| DNA polymerase alpha catalytic subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1340
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 259/421 (61%), Gaps = 37/421 (8%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
L+V+PL ++T + GN+ SRTL G RSER E+LLLHAFH +V PDK+ K++ +
Sbjct: 661 LDVIPLTKRLTLLAGNLWSRTLYGARSERIEYLLLHAFHNLKFVTPDKK----KRDLKRG 716
Query: 483 GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------ 536
E + +G++K Y GG+VLEPK G Y ++I+L+DFNSLYPS+IQE+N+C+TTI
Sbjct: 717 REDDDDEGKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQEFNVCYTTIDRDENT 776
Query: 537 ------PVRMLQDSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
P +S I C LP + ILP I+ LV+SRR++K +MK
Sbjct: 777 VSAEVPP----PESLICLSCRAAGLPSPCLHKCILPKVIRGLVDSRREIKRMMKSERDPG 832
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN- 647
+L M +IRQ ALKLTANSMYGCLGF SRF+AQPLA LVT +GR L NT L+ ++
Sbjct: 833 NLAM-LEIRQLALKLTANSMYGCLGFEYSRFYAQPLAELVTRQGRLALQNTVELIPQISP 891
Query: 648 -YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
VIYGDTDS+MI + +D V +G +IK + N+ Y+ LELDIDGV++ MLLL+KK
Sbjct: 892 SIRVIYGDTDSVMIQTGIKDDIGKVRNLGFEIKGKVNQRYQSLELDIDGVFRAMLLLRKK 951
Query: 706 KYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
KYAALS+ + +E+KG+D+VRRDW L+ V+ +IL+ + +D
Sbjct: 952 KYAALSVVDWQGEGKVYKREVKGLDMVRRDWCPLSQHVSDAVLKRILNAEGG-----EDI 1006
Query: 766 LQNIHEHMKKIRTDLDNGFV-PLTLLEITKQLTKAPE-----GGKVCITQIRLSRNRRGR 819
L + ++MK + D+ +G V PL I+K LTK PE G + +R+ + + G
Sbjct: 1007 LDFVIKYMKGVAQDVRSGNVYPLEEFVISKSLTKEPESYHGTGYPHAVVALRMKQRKEGV 1066
Query: 820 R 820
R
Sbjct: 1067 R 1067
Score = 84.0 bits (206), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 89/172 (51%), Gaps = 11/172 (6%)
Query: 214 MFFLDAFEDIYK--QPGTVYLFGKVFV-KENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
++ DA E + PGT+ LFGKV V +E+ SCCV +Q++ R ++LLP K
Sbjct: 244 FYWFDAKEQPHTLTAPGTILLFGKVCVNEEDEEFRSCCVRIQHVHRNVFLLP-------K 296
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPALP 329
E + A+V E + I I + + + +E+ YAF PGVP + + + ++ Y + P P
Sbjct: 297 EGSTDAEVVQEINAICRGSGIEERRIKFVERYYAFEEPGVPREKNRWAKLVYPGRYPPFP 356
Query: 330 SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
+ V G S LE L+++++ GPS+LE R+S CK E
Sbjct: 357 NKGGLTHVQVVVGASRSLLELFLIKKRLMGPSYLEIEHLVTAMDRVSHCKTE 408
>gi|115384642|ref|XP_001208868.1| hypothetical protein ATEG_01503 [Aspergillus terreus NIH2624]
gi|114196560|gb|EAU38260.1| hypothetical protein ATEG_01503 [Aspergillus terreus NIH2624]
Length = 1460
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 257/404 (63%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + ++ ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 743 GLMNFVNHCDADTYFVAALVLRLQMLPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 802
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANK---GKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
H Y+ PDK + +K E+ + ++ +KK Y GGLV EP+KG YDKF+++MD
Sbjct: 803 HRNKYICPDKYSSRLQKAEEKIQDGDEEDGVDKKKKDKYKGGLVFEPEKGLYDKFVLVMD 862
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 863 FNSLYPSIIQEYNICFTTVERTATAENENEEKVPEVPTSDQEQGILPRLIATLVGRRREV 922
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 923 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 982
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK LVE+ VIYGDTDS+MI+ N++ K+G+++K N+ Y+ LE+DID +++
Sbjct: 983 STKELVESKQLRVIYGDTDSVMINTNMDTISDALKVGDELKKVVNERYRLLEIDIDNIFR 1042
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++I+++ +GK + E+KG+D+ RR++ L+ EA + +++++L S
Sbjct: 1043 RLLLHAKKKYAAINITEV-DGKYVDKLEVKGLDMKRREYCALSKEASQRLLNEVL---SG 1098
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L L +HE+++ + + VP+ I +L+K PE
Sbjct: 1099 EDQEL--VLDRVHEYLRDLAHKMREYTVPVQKYVIYTKLSKRPE 1140
Score = 142 bits (359), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 112/191 (58%), Gaps = 16/191 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
RMF++D F ++ G++ LFGKV K S +S V V NI RK+Y LPR +K
Sbjct: 343 LRMFWID-FTEVN---GSLCLFGKVKNKHTGSFASAFVKVDNILRKLYFLPRENRVKHGR 398
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VYSE D++ ++ ++ K + +KYAF +PG+P +EYL++ Y PA
Sbjct: 399 ETDEEVDMEDVYSEVDEMMSRLRVGMHKIKPCTRKYAFEIPGIPREAEYLKLLYPYDKPA 458
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP D+ G+TFSHVFGT TS E +L + I GP WL+ EA+ + SWCK+E Q
Sbjct: 459 LPMDVKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADFSAVNNASWCKFECQV-- 516
Query: 387 MEKIRSKQGLI 397
SK GLI
Sbjct: 517 -----SKPGLI 522
Score = 46.2 bits (108), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE ++YEEV ++ Y + + R EDD++ DD G GY
Sbjct: 6 AKLAELRALRAAGKKRLSTYEIEEQGDIYEEVDDEGYKKVIRDRLDEDDFVVDDNGAGYA 65
Query: 161 EDGREIFD-------DDIED 173
+DGRE+++ DD ED
Sbjct: 66 DDGREVWNEPTAGYYDDSED 85
>gi|406606821|emb|CCH41857.1| DNA polymerase alpha subunit A [Wickerhamomyces ciferrii]
Length = 1452
Score = 308 bits (789), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 169/411 (41%), Positives = 252/411 (61%), Gaps = 18/411 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+ +K ++S +I + +L L+ Q+TN+ GN + TL G R+ RNEF+LLH F
Sbjct: 732 SLFMILKENCVNSLITAEIAFRMQILSLSKQLTNLAGNAWAHTLGGTRAGRNEFILLHEF 791
Query: 461 HEKSYVLPDKQYGKNK---------KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDK 511
+ Y++PDK+ + + + E+ + KK+ Y GGLV EP+KG +
Sbjct: 792 NRNDYIVPDKETRQQRLAHQQQYQQQSSEDGNDEQVSNNNKKSKYQGGLVFEPEKGLHKN 851
Query: 512 FIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+I++MDFNSLYPSIIQE+NICFTT+ + ++I TL + +P D G+LP + LV
Sbjct: 852 YILVMDFNSLYPSIIQEFNICFTTVDRDL---NNIETLPD-VPPTGSDQGVLPRLLSTLV 907
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
RR+VK LMK P + QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT K
Sbjct: 908 NRRREVKKLMKDPTATMIEKAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNK 967
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREIL++T+ L E+L V+YGDTDS+MI N +D KIG K + N+ Y+ LE+D
Sbjct: 968 GREILMDTRQLAESLGLRVVYGDTDSVMIDTNCDDIKDATKIGEDFKIKVNERYRLLEID 1027
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
ID V+K +LL KKKYAA+++S G+ E+KG+D+ RR++ L+ E +V+ +I
Sbjct: 1028 IDNVFKRLLLHAKKKYAAMNVSFDKMGQENSVLEVKGLDMKRREYCPLSKEISIYVLEKI 1087
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
L +D + L I+ +++ + + + N + +I +L+K P
Sbjct: 1088 L-----SDLDPELALNEIYSYLEDMTSKIKNNEIRADKFKINTKLSKDPSS 1133
Score = 110 bits (274), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 100/192 (52%), Gaps = 18/192 (9%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
++ K F+M++LD E T+ LFGKV + S V V+N +R+++ LPR
Sbjct: 319 DDSKSFKMYWLDYTE----VENTLILFGKVLTTDK-QLVSAMVQVKNFNRELFFLPRDYR 373
Query: 267 L----KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRY 321
L T E V+ + V E I QY + ++++ +KYAF +PG+P +YL++
Sbjct: 374 LVDGEATDEAVTPSDVRDEIQPLILEQYGLTSLRTKEETRKYAFEMPGIPKEKDYLKILL 433
Query: 322 SAKCP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--R 374
+ P LPSDL G+TFSHVFGT + E +L+R I GP WLE A F
Sbjct: 434 PFQPPKNAKKTLPSDLEGETFSHVFGTSANIFETFVLQRNIMGPCWLEIKNA-NFDDVKN 492
Query: 375 ISWCKYEVQCNQ 386
S CK EV N
Sbjct: 493 TSHCKLEVSVNN 504
>gi|261330543|emb|CBH13527.1| DNA polymerase I, putative [Trypanosoma brucei gambiense DAL972]
Length = 1340
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 259/421 (61%), Gaps = 37/421 (8%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
L+V+PL ++T + GN+ SRTL G RSER E+LLLHAFH +V PDK+ K++ +
Sbjct: 661 LDVIPLTKRLTLLAGNLWSRTLYGARSERIEYLLLHAFHNLKFVTPDKK----KRDLKRG 716
Query: 483 GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------ 536
E + +G++K Y GG+VLEPK G Y ++I+L+DFNSLYPS+IQE+N+C+TTI
Sbjct: 717 REDDDDEGKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQEFNVCYTTIDRDENT 776
Query: 537 ------PVRMLQDSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
P +S I C LP + ILP I+ LV+SRR++K +MK
Sbjct: 777 VSAEVPP----PESLICLSCRAAGLPSPCLHKCILPKVIRGLVDSRREIKRMMKSEKDPG 832
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN- 647
+L M +IRQ ALKLTANSMYGCLGF SRF+AQPLA LVT +GR L NT L+ ++
Sbjct: 833 NLAM-LEIRQLALKLTANSMYGCLGFEYSRFYAQPLAELVTRQGRLALQNTVELIPQISP 891
Query: 648 -YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
VIYGDTDS+MI + +D V +G +IK + N+ Y+ LELDIDGV++ MLLL+KK
Sbjct: 892 SIRVIYGDTDSVMIQTGIKDDIVKVRNLGFEIKGKVNQRYQSLELDIDGVFRAMLLLRKK 951
Query: 706 KYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
KYAALS+ + +E+KG+D+VRRDW L+ V+ +IL+ + +D
Sbjct: 952 KYAALSVVDWQGEGKVYKREVKGLDMVRRDWCPLSQHVSDAVLKRILNAEGG-----EDI 1006
Query: 766 LQNIHEHMKKIRTDLDNGFV-PLTLLEITKQLTKAPE-----GGKVCITQIRLSRNRRGR 819
L + ++MK + D+ +G V PL I+K LTK PE G + +R+ + + G
Sbjct: 1007 LDFVIKYMKGVAQDVRSGNVYPLEEFVISKSLTKEPESYHGTGYPHAVVALRMKQRKEGV 1066
Query: 820 R 820
R
Sbjct: 1067 R 1067
Score = 82.8 bits (203), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 11/172 (6%)
Query: 214 MFFLDAFEDIYK--QPGTVYLFGKVFV-KENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
++ DA E + PGT+ LFGKV + +E+ SCCV +Q++ R ++LLP K
Sbjct: 244 FYWFDAKEQPHTLTAPGTILLFGKVCMNEEDEEFRSCCVRIQHVHRNVFLLP-------K 296
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPALP 329
E + A+V E + I I + + + +E+ YAF PGVP + + + ++ Y + P P
Sbjct: 297 EGSTDAEVVQEINAICRGSGIEERRIKFVERYYAFEEPGVPREKNRWAKLVYPGRYPPFP 356
Query: 330 SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
+ V G S LE L+++++ GPS+LE R+S CK E
Sbjct: 357 NKGGLTHVQVVVGASRSLLELFLIKKRLMGPSYLEIEHLVTAMDRVSHCKTE 408
>gi|118834|sp|P27727.1|DPOLA_TRYBB RecName: Full=DNA polymerase alpha catalytic subunit
gi|10501|emb|CAA43287.1| DNA-directed DNA polymerase [Trypanosoma brucei]
Length = 1339
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 259/421 (61%), Gaps = 37/421 (8%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
L+V+PL ++T + GN+ SRTL G RSER E+LLLHAFH +V PDK+ K++ +
Sbjct: 660 LDVIPLTKRLTLLAGNLWSRTLYGARSERIEYLLLHAFHNLKFVTPDKK----KRDLKRG 715
Query: 483 GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------ 536
E + +G++K Y GG+VLEPK G Y ++I+L+DFNSLYPS+IQE+N+C+TTI
Sbjct: 716 REDDDDEGKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQEFNVCYTTIDRDENT 775
Query: 537 ------PVRMLQDSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
P +S I C LP + ILP I+ LV+SRR++K +MK
Sbjct: 776 VSAEVPP----PESLICLSCRAAGLPSPCLHKCILPKVIRGLVDSRREIKRMMKSEKDPG 831
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN- 647
+L M +IRQ ALKLTANSMYGCLGF SRF+AQPLA LVT +GR L NT L+ ++
Sbjct: 832 NLAM-LEIRQLALKLTANSMYGCLGFEYSRFYAQPLAELVTRQGRLALQNTVELIPQISP 890
Query: 648 -YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
VIYGDTDS+MI + +D V +G +IK + N+ Y+ LELDIDGV++ MLLL+KK
Sbjct: 891 SIRVIYGDTDSVMIQTGIKDDIVKVRNLGFEIKGKVNQRYQSLELDIDGVFRAMLLLRKK 950
Query: 706 KYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
KYAALS+ + +E+KG+D+VRRDW L+ V+ +IL+ + +D
Sbjct: 951 KYAALSVVDWQGEGKVYKREVKGLDMVRRDWCPLSQHVSDAVLKRILNAEGG-----EDI 1005
Query: 766 LQNIHEHMKKIRTDLDNGFV-PLTLLEITKQLTKAPE-----GGKVCITQIRLSRNRRGR 819
L + ++MK + D+ +G V PL I+K LTK PE G + +R+ + + G
Sbjct: 1006 LDFVIKYMKGVAQDVRSGNVYPLEEFVISKSLTKEPESYHGTGYPHAVVALRMKQRKEGV 1065
Query: 820 R 820
R
Sbjct: 1066 R 1066
Score = 82.8 bits (203), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 11/172 (6%)
Query: 214 MFFLDAFEDIYK--QPGTVYLFGKVFV-KENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
++ DA E + PGT+ LFGKV + +E+ SCCV +Q++ R ++LLP K
Sbjct: 243 FYWFDAKEQPHTLTAPGTILLFGKVCMNEEDEEFRSCCVRIQHVHRNVFLLP-------K 295
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPALP 329
E + A+V E + I I + + + +E+ YAF PGVP + + + ++ Y + P P
Sbjct: 296 EGSTDAEVVQEINAICRGSGIEERRIKFVERYYAFEEPGVPREKNRWAKLVYPGRYPPFP 355
Query: 330 SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
+ V G S LE L+++++ GPS+LE R+S CK E
Sbjct: 356 NKGGLTHVQVVVGASRSLLELFLIKKRLMGPSYLEIEHLVTAMDRVSHCKTE 407
>gi|242787440|ref|XP_002481007.1| DNA polymerase alpha catalytic subunit, putative [Talaromyces
stipitatus ATCC 10500]
gi|218721154|gb|EED20573.1| DNA polymerase alpha catalytic subunit, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1464
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 166/403 (41%), Positives = 250/403 (62%), Gaps = 8/403 (1%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + +I ++ L +L L +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 749 GLMKYVTHCEADTYFIAALVIRLQMLSLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 808
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYS--GGLVLEPKKGFYDKFIILMDF 518
H Y+ PDK + K EE + + KK GGLV EP+KG YD+++++MDF
Sbjct: 809 HRNKYICPDKYSNRQHKATEEKMDDDDDSTDKKKKEKYKGGLVFEPEKGLYDRYVLVMDF 868
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQE+NICFTT+ +++ +P + GILP I LV RR+VK
Sbjct: 869 NSLYPSIIQEFNICFTTVDRSSTAENENEEKVPEVPSSDQEQGILPRLIANLVTRRREVK 928
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
LMK +++ L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +
Sbjct: 929 KLMKDKRATTEQLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRS 988
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK L E+ VIYGDTDS+MI+ N++ K+G + K N+ YK LE+DID V++
Sbjct: 989 TKDLAESKQLRVIYGDTDSVMINTNMDTISDALKVGEEFKMSVNERYKLLEIDIDNVFRR 1048
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA++++++ +GK I E+KG+D+ RR++ L+ E K ++ +IL +
Sbjct: 1049 LLLHAKKKYAAINMTEV-DGKYIDKLEVKGLDMKRREYCALSKEVSKRLLDEILSGEDS- 1106
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L +H++++ I + + +P+ I +L+K PE
Sbjct: 1107 ----EVVLNKVHDYLRDIASQMREYKIPVQKYVIYTKLSKRPE 1145
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 105/185 (56%), Gaps = 9/185 (4%)
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK---- 268
+ F+LD E GT+ LFGKV K+ ++ S V V NI RK++ LPR +K
Sbjct: 351 QFFWLDYTE----VNGTLCLFGKVKNKKTGTYVSSFVKVDNILRKLFFLPREHRMKNGHI 406
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPAL 328
T E V + VY E D++ T+ K+ K + +KYAF LP +P +YL++ Y P L
Sbjct: 407 TDEEVDMEDVYEEVDKMMTKLKVGMHKIKPCTRKYAFELPNIPKEGDYLKLLYPYDKPVL 466
Query: 329 PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQM 387
D +G+TFSHVFGT T+ E +L ++I GP WL+ EA+ + SWCK+E Q ++
Sbjct: 467 SMDTTGETFSHVFGTNTALFEQFVLWKRIMGPCWLKIGEADFSAAANASWCKFECQVSKP 526
Query: 388 EKIRS 392
I +
Sbjct: 527 NTITT 531
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +LK L+ G K YE ++Y+EV E+ Y + V +R EDD++ DD G+GY
Sbjct: 7 AKLAELKALRASGKKRLSTYEVEDQGSIYDEVDEEGYKKVVRQRLDEDDFVVDDNGEGYA 66
Query: 161 EDGREIFDDD 170
+DGRE++++D
Sbjct: 67 DDGREVWNED 76
>gi|448521819|ref|XP_003868577.1| Pol1 DNA directed DNA polymerase alpha [Candida orthopsilosis Co
90-125]
gi|380352917|emb|CCG25673.1| Pol1 DNA directed DNA polymerase alpha [Candida orthopsilosis]
Length = 1449
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 247/402 (61%), Gaps = 27/402 (6%)
Query: 417 IKIMCEL----NVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY 472
+KI E+ +L L+ Q+TN+ GN S TL G R+ RNE++LLH F +Y++PDK+
Sbjct: 729 VKIASEVAFATQILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFRRNNYIVPDKED 788
Query: 473 GKNKKEG-------EETGE-ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPS 524
+K E E KK Y GGLV EP+KG + +I++MDFNSLYPS
Sbjct: 789 STHKNTSFQQEAQLENADEDVQTATSNKKPKYQGGLVFEPEKGLHKNYILVMDFNSLYPS 848
Query: 525 IIQEYNICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
IIQEYNICFTT+ +D D+ +P++ + G+LP + LV RR+VK
Sbjct: 849 IIQEYNICFTTVDRARFNTTHNEDKDM----PLIPDNDSERGVLPRLLNTLVTRRREVKK 904
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
L+K P + QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL++T
Sbjct: 905 LLKDPKNTPFQRAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMDT 964
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
+ L E V+YGDTDS+MI K G K + N+ Y+ LE+DID V+K +
Sbjct: 965 RQLAEASGLRVVYGDTDSVMIDTGAQSLKEAIKFGEDFKLQVNERYRMLEIDIDNVFKRL 1024
Query: 700 LLLKKKKYAALSIS-KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
LL KKKYAA+++S + G+ + + E+KG+D+ RR++ QL+ + FV+ +IL +
Sbjct: 1025 LLHAKKKYAAMNVSVNKATGEEVSTLEVKGLDMRRREYCQLSKDISTFVLMKIL-----S 1079
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
D ++ LQ+++ +++++R + +P+ +I +L+K P
Sbjct: 1080 DSDPEEALQDVYSYLEEMRDKILRNEIPVDRFKINTKLSKDP 1121
Score = 83.6 bits (205), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 14/187 (7%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR-SEHLKTK 270
F+MF+LD E ++ LFGK+ K+ +S V V + R++Y+LP+ +E
Sbjct: 314 FKMFWLDYAE----VENSLLLFGKIQTKDGKV-ASGVVQVNGLCRELYILPKVNEGSGKN 368
Query: 271 EPVSIAQVYSEFDQI-ATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP--- 326
E S V E I YK+ +++ KKYAF L +P EYL+V
Sbjct: 369 ERFSTDDVREEITPIFMDNYKLETLRAKPETKKYAFELANIPKEIEYLKVLLPYNTATNR 428
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
LP+D G+TF+H+FGT + E+ + +R I GP WLE + F + S C+ EV
Sbjct: 429 RVLPADTEGETFNHIFGTNANMFESFVTQRNIMGPCWLEI-QGGDFDAIRNSSHCQIEVA 487
Query: 384 CNQMEKI 390
KI
Sbjct: 488 VASPGKI 494
Score = 40.4 bits (93), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 13/67 (19%)
Query: 129 VYEEVSEKEYTERVLKRQE---DDWIDDDGGDGYVEDGREIFDD--------DIEDVPQK 177
+Y+EV E+ + E KR + DD+I DD G+GYV++G + +DD D +D+
Sbjct: 37 IYDEVDEETFREH--KRHQLINDDFIVDDNGEGYVDNGTDEWDDSSRPNYYSDEDDIASN 94
Query: 178 KEKHDKR 184
K++H K+
Sbjct: 95 KKRHKKK 101
>gi|47118293|gb|AAT11258.1| DNA polymerase alpha [Uroleptus sp. WJC-2003]
Length = 1502
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 191/428 (44%), Positives = 263/428 (61%), Gaps = 39/428 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ + ++ T + + ++M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 760 LFQIVEHTEKDAYFTFQLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 819
Query: 462 EKSYVLPDKQYGKNK--------KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
+K ++LPDK+ K +E EE KG RKKA Y+GGLV+EPK GFYD I
Sbjct: 820 KKKFILPDKKPPNAKDFKRGMLGEEFEENDNKRKGPKRKKAQYAGGLVIEPKAGFYDNII 879
Query: 514 ILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY-------------LPEHQ 557
+L+DFNSLYPSIIQEYN+CFTT+ P + S+I + LP+
Sbjct: 880 LLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSEIKNQFKIQDDDENEEEEQSDLPDKN 939
Query: 558 VDT--GILPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGF 614
V+ +LP+ ++ LV+ RR VK MK N + L Q +IRQKA+KLTANSMYGCLGF
Sbjct: 940 VNLKDAVLPNVLRDLVQKRRAVKDKMK--NEKDQIKLQQLEIRQKAIKLTANSMYGCLGF 997
Query: 615 PNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKI 673
+SRF A+ +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ N ++
Sbjct: 998 GSSRFHARAIAALITRTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNILQQALEM 1057
Query: 674 GNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVR 733
G ++K E N YK LE++IDGV+K +LLLKKKKYAAL + + QE+KG+D+VR
Sbjct: 1058 GKRLKVEVNGFYKCLEIEIDGVFKSLLLLKKKKYAALKYEGYGSPDVKVIQEMKGLDMVR 1117
Query: 734 RDWSQLASEAGKFVISQILDEQSYTD--YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 791
RDW L+ G +V+ QIL +S + +L++ L +I E MK R LD
Sbjct: 1118 RDWCPLSKTVGNYVLGQILSGKSREEVVMNLNEYLSDIGERMKSNRITLDQYI------- 1170
Query: 792 ITKQLTKA 799
ITKQLT+A
Sbjct: 1171 ITKQLTRA 1178
Score = 103 bits (258), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 104/206 (50%), Gaps = 15/206 (7%)
Query: 194 NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQN 253
NA+D +P D +++DA E+ +Y+FGK+F E SC + V
Sbjct: 339 NAQDYPVPYNADG----TLSFYWIDAHEE--NNGADLYVFGKIFQPEVKQFVSCALKVNG 392
Query: 254 IDRKIYLLP------RSEHLKTKEPVSIAQVYSEFDQIATQ--YKILDFKSRKIEKKYAF 305
+ R+IY LP R K +E + V E D I + I ++ + + +KYAF
Sbjct: 393 MQREIYALPKQTGKARGTLTKEEESKQVRAVQLELDDIRKKRFSGITKWRCKPVTRKYAF 452
Query: 306 NLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF 365
+P +L+++Y + P LP++L+G +F +F T S LE L+L+RKIKGP W+
Sbjct: 453 EMPIQHGEHLFLKIKYDSTMPPLPTNLTGQSFECLFNTNQSMLELLILKRKIKGPCWMTI 512
Query: 366 PEAEKFPS-RISWCKYEVQCNQMEKI 390
A+K + +WC+ E+ + + I
Sbjct: 513 KNAQKVVDFKKTWCRQEISIDNPKNI 538
>gi|401623954|gb|EJS42033.1| pol1p [Saccharomyces arboricola H-6]
Length = 1468
Score = 307 bits (786), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 257/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F Y++PDK+ G+N+ + ++
Sbjct: 768 IQLLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGYIVPDKEGGRNRTQRQKQ 827
Query: 483 GEANKG--KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
+ N K KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 828 NDENASAPKNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 884
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +V G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 885 RNKEDIDELSN-VPPSEVSQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 942
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 943 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 1002
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL++S NG
Sbjct: 1003 DTGCDNYADAIKIGLGFKKSVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVSLDKNGNE 1062
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++E+++ IRT +
Sbjct: 1063 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYEYLEDIRTKV 1117
Query: 781 DNGFVPLTLLEITKQLTKAP---EGGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P GGK + Q+ L + GR
Sbjct: 1118 EANNIRIDKYKINMRLSKDPTAYPGGKNMPAVQVALRMRKAGR 1160
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 100/186 (53%), Gaps = 19/186 (10%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
F+MF+LD E T+ LFGKV ++ N+ + S V V + R+++ LPR + K
Sbjct: 352 FQMFWLDFCE----VNTTLILFGKVKLR-NDKYVSAMVQVNGLCRELFFLPR----EGKT 402
Query: 272 PVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P A V+ E + +Y + + +++ + KY+F LP +P ++YL+V + P
Sbjct: 403 P---ADVHEEIIPLLMDKYGLDNIRAKPQKMKYSFELPDIPSENDYLKVLLPYQTPKSSR 459
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSR-ISWCKYEVQC 384
+PSDLS DTF HVFG + E+ +++ KI GP WLE A+ R S C EV
Sbjct: 460 DTIPSDLSSDTFHHVFGGNANIFESFVIQNKIMGPCWLEIKGADFNAVRNSSHCAIEVFV 519
Query: 385 NQMEKI 390
++ + I
Sbjct: 520 DKPQNI 525
Score = 40.0 bits (92), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 32/57 (56%), Gaps = 14/57 (24%)
Query: 129 VYEEVSEKEYTERVLKRQE---DDWIDDDGGDGYV---------EDGREIFDDDIED 173
+Y+EV EKEY R KRQE DD++ DD G GYV EDG D+D ED
Sbjct: 36 LYDEVDEKEYRAR--KRQELLHDDFVVDDDGLGYVDRGVEEDWREDGNNYIDEDDED 90
>gi|410078800|ref|XP_003956981.1| hypothetical protein KAFR_0D01990 [Kazachstania africana CBS 2517]
gi|372463566|emb|CCF57846.1| hypothetical protein KAFR_0D01990 [Kazachstania africana CBS 2517]
Length = 1449
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 175/404 (43%), Positives = 247/404 (61%), Gaps = 17/404 (4%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK---QYGKNKKEG 479
+ +L L Q+TN+ GN S+TL G RS RNE++LLH F YV+PDK Q + +
Sbjct: 746 IQLLSLTKQLTNLAGNAWSQTLGGTRSLRNEYILLHEFARNGYVVPDKESRQARTQRMKK 805
Query: 480 EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR 539
+A+ KA Y GGLV +P+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 806 NSANDADDTAPSSKAKYQGGLVFDPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVQRN 865
Query: 540 MLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599
+ DI + E E V G+LP + LV RR+VK +MK + L Q DIRQ+
Sbjct: 866 L---HDINEMPEVPGEDNVQ-GVLPRLLANLVARRREVKKIMKT-EMDPHKLAQCDIRQQ 920
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+M
Sbjct: 921 ALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVM 980
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGK 719
I + Y KIG K N+ YK LE+DID V+K +LL KKKYAAL++S G
Sbjct: 981 IDTGCDSYADAIKIGQNFKRLVNERYKLLEIDIDNVFKRLLLHAKKKYAALNVSIDKAGN 1040
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
E+KG+D+ RR++ L+ + +V+S +L +D + LQ I+ ++++I++
Sbjct: 1041 ENTVLEVKGLDMKRREFCPLSKDVSTYVLSHLL-----SDKDPETALQEIYAYLEEIKSK 1095
Query: 780 LDNGFVPLTLLEITKQLTKAPE---GGKVC-ITQIRLSRNRRGR 819
++N + +I +L+K P G K Q+ L + GR
Sbjct: 1096 VENNQIRADKYKINTKLSKDPSAYPGAKTMPAVQVALKMRKAGR 1139
Score = 97.4 bits (241), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 21/179 (11%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
F+MF+LD E ++ LFGKV + N S+ V + ++R+++ LPR H
Sbjct: 331 FQMFWLDFVE----INNSLILFGKVKANDGNLVSAM-VQINELNRELFFLPREGH----- 380
Query: 272 PVSIAQVYSEFDQIATQ-YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
S A+++ E + + Y + + +++ + KYAF LP +P +EYL+V CP
Sbjct: 381 --SAAEIHEEIIPLLMEKYGLANIRAKPQKMKYAFELPDIPHETEYLKVLLPFNCPKNSN 438
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
+P DL +TFSHVFG ++ E+ +++ KI GP WLE + F S S C EV
Sbjct: 439 DLIPPDLCSETFSHVFGGNSNIFESFVVQNKIMGPCWLEIKNGD-FSSLKNASNCSSEV 496
>gi|32329599|gb|AAP45777.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
Length = 1514
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 192/430 (44%), Positives = 263/430 (61%), Gaps = 40/430 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I + I+ + S Y +M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 772 IFQLIEHSEKDSYYTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 831
Query: 462 EKSYVLPDKQ-----------YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+K ++LPDK+ G +E + G KG RKKA Y+GGLV+EPK GFYD
Sbjct: 832 KKKFILPDKKPPNAKDLRRGFMGDEYEENDTKGGGKKGGKRKKAKYAGGLVIEPKAGFYD 891
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEY----------------LP 554
I+L+DFNSLYPSIIQEYN+CFTT+ R ++ D + L LP
Sbjct: 892 NIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDLP 951
Query: 555 EHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 612
+ V+ +LP+ ++ LV+ R+ VK MK L Q +IRQKA+KLTANSMYGCL
Sbjct: 952 DKNVNIKDAVLPNVLRDLVQKRKAVKEKMKNEK-DQVKLQQLEIRQKAIKLTANSMYGCL 1010
Query: 613 GFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVF 671
GF +SRF A +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ N
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSL 1070
Query: 672 KIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDV 731
++G ++K E N LYK LE++IDGV+K +LLLKKKKYAAL + + ++ QE+KG+D+
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALRYEGVGSNEVKVIQEMKGLDM 1130
Query: 732 VRRDWSQLASEAGKFVISQILDEQSYTD--YSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
VRRDW L+ G +V+SQIL + D ++L++ L +I E MK R LD F+
Sbjct: 1131 VRRDWCPLSKSIGNYVLSQILSGKQREDVVFNLNEYLSDIGEKMKSNRITLDQ-FI---- 1185
Query: 790 LEITKQLTKA 799
ITK T+A
Sbjct: 1186 --ITKXXTRA 1193
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 176 QKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 235
Q ++ H + K + + ++ +LPL D +++DA E+ +++FGK
Sbjct: 332 QNQQAHQEFKTMEQKSAMDIQEFALPLNQDGS----LSFYWIDAHEE--NNGADLFIFGK 385
Query: 236 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS-------IAQVYSEFDQIATQ 288
++ E N + SC + V + R+IY LP+ + K + ++ + V E + I +
Sbjct: 386 IYQPEINQYVSCSMKVNGMQREIYALPKMQKGKARGTLTREEENQLVRGVQLELEDIRKK 445
Query: 289 --YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTS 346
I ++ + + +KYAF +P +L+++Y A LPS + G+TF +FG+ S
Sbjct: 446 RFQGITKWRCKPVTRKYAFEMPIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQS 505
Query: 347 FLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCN 385
LE +L+RKIKGP W+ +K + +WC+ E++ +
Sbjct: 506 MLELFILKRKIKGPCWMTIKNPKKVTDFKKTWCRQEIEID 545
Score = 39.7 bits (91), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 120 KYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFD-DDIEDVPQKK 178
+Y+ + ++EE+ EY +R+ DD+I DD G GY + G EI++ DD E+V KK
Sbjct: 42 QYQVEEAKRIFEEIDADEYERIQDQRKNDDFIVDDDGFGYRDHGGEIWERDDNEEVGGKK 101
Query: 179 EKHDKRKKNKNIQNPNAKDDSLPLATDHENK 209
+ KRK + N Q + + +P +T +NK
Sbjct: 102 K---KRKLDPNEQ--HITNFMMPASTIRKNK 127
>gi|157867365|ref|XP_001682237.1| putative DNA polymerase I alpha catalytic subunit [Leishmania major
strain Friedlin]
gi|68125689|emb|CAJ04158.1| putative DNA polymerase I alpha catalytic subunit [Leishmania major
strain Friedlin]
Length = 1339
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 179/399 (44%), Positives = 256/399 (64%), Gaps = 28/399 (7%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ K
Sbjct: 658 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFKR 716
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 717 GHDDEEED---GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 773
Query: 539 RMLQDSDITT----LCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 774 ENRSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKTEKDANN 833
Query: 590 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN-- 647
L + +IRQKALKLTANSMYGCLGF SRF AQPLA LVT +GR L +T L+ LN
Sbjct: 834 LAL-LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLALQSTVDLIPQLNPS 892
Query: 648 YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
VIYGDTDS+MI + ND +V +G ++K++ NK Y+ LE+DIDGV++ +LLLKKKK
Sbjct: 893 LRVIYGDTDSVMIQTGIKNDIKAVRDLGLELKAKINKRYQSLEIDIDGVFRAILLLKKKK 952
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD---EQSYTDYSLD 763
YAAL+++ +E+KG+D+VRRDW L+ V+S++L+ + DY +
Sbjct: 953 YAALTVTDWQGEGKTYKKEVKGLDMVRRDWCPLSKSVCDSVLSRVLNAEGSEDILDYVM- 1011
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ ++++ E ++ R LDN FV I+K LTK PE
Sbjct: 1012 NYMRDVAEQVRAGRYTLDN-FV------ISKSLTKEPEA 1043
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 110/204 (53%), Gaps = 21/204 (10%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYK---QPGTVYLFGKVFVKEN--NSHSSCCVIVQN 253
++P ++ + +F ++ DA E + PG+++LFGKV V++N S+ SCCV V+N
Sbjct: 230 AVPYKSEEMTEGLF--YWFDAREQPHTLSVDPGSLFLFGKVAVEKNGRTSYLSCCVRVRN 287
Query: 254 IDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-D 312
+ R +++LP++ S V E + I I + + +E+ YAF +PGVP +
Sbjct: 288 MYRSVFVLPKAGS-------SQQDVVKEINDICRNQGIEQRRIKFVERYYAFEVPGVPHE 340
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVF---GTKTSFLENLLLERKIKGPSWLEFPEAE 369
+++ ++RY + P P + G F H+ G +S LE L++RK+KGPS+L
Sbjct: 341 KTQWAKLRYPGRYP--PLNAKG-PFRHILIIMGASSSLLELFLIKRKLKGPSFLRISGLV 397
Query: 370 KFPSRISWCKYEVQCNQMEKIRSK 393
P+RIS C E + +R++
Sbjct: 398 ASPNRISHCALEFSVESPKNLRAE 421
>gi|212543673|ref|XP_002151991.1| DNA polymerase alpha catalytic subunit, putative [Talaromyces
marneffei ATCC 18224]
gi|210066898|gb|EEA20991.1| DNA polymerase alpha catalytic subunit, putative [Talaromyces
marneffei ATCC 18224]
Length = 1464
Score = 306 bits (784), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 164/403 (40%), Positives = 250/403 (62%), Gaps = 8/403 (1%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + +I ++ L +L L +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 749 GLLKYVTHCEADTYFISALVIRLQMLSLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 808
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYS--GGLVLEPKKGFYDKFIILMDF 518
H Y+ PDK + K EE + + KK GGLV EP+KG YD+++++MDF
Sbjct: 809 HRNKYICPDKYSNRQLKALEEKVDDDDDSTDKKKKEKYKGGLVFEPEKGLYDRYVLVMDF 868
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQE+NICFTT+ +++ +P + GILP I LV RR+VK
Sbjct: 869 NSLYPSIIQEFNICFTTVDRSSTAENENEEQVPEVPSSDQEQGILPRLIANLVTRRREVK 928
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
LMK +++ L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +
Sbjct: 929 KLMKDKRATTEQLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRS 988
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKY 698
TK L E+ VIYGDTDS+MI+ N++ K+G + K+ N+ YK LE+DID V++
Sbjct: 989 TKDLAESKQLRVIYGDTDSVMINTNMDTISDALKVGEEFKASVNERYKLLEIDIDNVFRR 1048
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E K ++ +IL +
Sbjct: 1049 LLLHAKKKYAAINMTEI-DGKYVDKLEVKGLDMKRREYCALSKEVSKRLLDEILSGEDS- 1106
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L +H++++ + + +P+ I +L+K PE
Sbjct: 1107 ----EVVLNKVHDYLRDVTAQMKEYKIPVQKYVIYTKLSKRPE 1145
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 72/185 (38%), Positives = 104/185 (56%), Gaps = 9/185 (4%)
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK---- 268
+ F+LD E G++ LFGKV K+ S+ S V V NI RK++ LPR +K
Sbjct: 351 QFFWLDYTE----VNGSLCLFGKVKNKKTGSYVSSFVKVDNILRKLFFLPRENRVKNGHV 406
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPAL 328
T E V + VY E D + T+ K+ K + +KYAF LP +P +YL++ Y P L
Sbjct: 407 TDEEVDMEDVYEEVDGMMTKLKVGMHKIKPCTRKYAFELPNIPKEGDYLKLLYPYDKPVL 466
Query: 329 PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQM 387
P D +G+TFSHVFGT T+ E +L + + GP WL+ EA+ + SWCK+E Q ++
Sbjct: 467 PMDTTGETFSHVFGTNTALFEQFVLWKHVMGPCWLKIGEADFSAATNASWCKFECQVSKP 526
Query: 388 EKIRS 392
I +
Sbjct: 527 NTITT 531
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +LK L+ G K YE ++Y+EV E+ Y + V KR EDD++ DD G+GY
Sbjct: 7 AKLAELKALRASGKKRLSTYEVEDQGSIYDEVDEEGYKKVVRKRLDEDDFVVDDNGEGYA 66
Query: 161 EDGREIFDDD 170
+DGRE++++D
Sbjct: 67 DDGREVWNED 76
>gi|397575369|gb|EJK49658.1| hypothetical protein THAOC_31441 [Thalassiosira oceanica]
Length = 1287
Score = 306 bits (783), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 170/428 (39%), Positives = 263/428 (61%), Gaps = 28/428 (6%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLA-----------IQITNVCGNVLSRTLMGGRSE 450
V+ K T+ + + ++M +L +LPL Q+TN+ GN+ + T+ G RS+
Sbjct: 540 FVDLAKHTLNDAQLVQRLMFKLQLLPLTKISSFLSVLSPQQLTNIAGNLWNSTIKGNRSQ 599
Query: 451 RNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
R E++LLH FH+ Y+LP+K ++E EA G+K Y+G V EP KG ++
Sbjct: 600 RAEYILLHEFHKMGYLLPEKLTASQRRE-----EAGCSGGKK--GYAGAEVFEPSKGLHE 652
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKL 570
F+++MD+ SL ++IQEYN+CFTT+ + D LP D G+LP ++ L
Sbjct: 653 SFVLVMDYESLSAALIQEYNLCFTTMDWTDKNNGDQEHSLPTLPAESQDRGVLPKVVEAL 712
Query: 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
V RR +K LM+ + SD Q +IRQ ALK+TA S+YGCLG+ + RF+A+P+AAL+
Sbjct: 713 VVQRRNLKELMRS-EVDSDKKEQLNIRQLALKITACSVYGCLGYDSFRFYAEPIAALLAQ 771
Query: 631 KGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVN---DYDSVFKIGNQIKSECNKLYK 686
GR+ L+ TK + EN + EVIYGDTDS+MI+ ++ DY V ++G+ +KSE NKLYK
Sbjct: 772 LGRQTLVRTKDIAENTMGLEVIYGDTDSIMINTRISRLIDYSKVKELGDSVKSEVNKLYK 831
Query: 687 QLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746
+LEL++D +++ ML+L+KKKYAAL+IS+ G + +E+KG+D+VRRDW + E+GK+
Sbjct: 832 KLELEVDAIFRSMLILEKKKYAALTISEGPGGLLKFGKELKGLDLVRRDWCIQSRESGKY 891
Query: 747 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVC 806
V+ QIL + D QNIH+H++ + + G + + ITK L K P K
Sbjct: 892 VVDQILSSEER-----DVVFQNIHDHLELLSEKMRYGELSIGNYVITKGLNKHPNEYKSS 946
Query: 807 ITQIRLSR 814
+ ++++R
Sbjct: 947 LPHVQVAR 954
>gi|50305661|ref|XP_452791.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641924|emb|CAH01642.1| KLLA0C13255p [Kluyveromyces lactis]
Length = 1430
Score = 305 bits (782), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 185/455 (40%), Positives = 274/455 (60%), Gaps = 29/455 (6%)
Query: 380 YEVQC---------NQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAI 430
Y+V C N + I + L+ + E I+ +++ + +I +L L
Sbjct: 680 YQVSCGIERKSLEINYLNPIYQEDESQMLLALGENIENSIITAEVAFRI----QILSLTK 735
Query: 431 QITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE--ANKG 488
Q+TN+ GN +TL G R+ RNE++LLH F+ Y++PDK+ + K++ ++ E
Sbjct: 736 QLTNLAGNGWRQTLGGTRAGRNEYILLHEFNRNDYIVPDKETRQMKQDRQQKNEDPMEPQ 795
Query: 489 KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITT 548
KK+ Y GGLV EP+KG + +I++MDFNSLYPSIIQE+NICFTT+ R QD++
Sbjct: 796 VSSKKSKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEFNICFTTVD-RNPQDNE--- 851
Query: 549 LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSM 608
+P + G+LP + LV+ RR+VK LMK N +S QYDIRQ+ALKLTANSM
Sbjct: 852 ELPDVPSREKSRGVLPRLLANLVQRRREVKNLMKTENDASKK-AQYDIRQQALKLTANSM 910
Query: 609 YGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYD 668
YGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E+L V+YGDTDS+MIS ++Y
Sbjct: 911 YGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESLGLTVVYGDTDSVMISTGCDNYM 970
Query: 669 SVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKG 728
KIG K N+ Y LE+DID ++K +LL KKKYAAL+++ + E+KG
Sbjct: 971 DAIKIGENFKKLVNERYSLLEIDIDNIFKRLLLHAKKKYAALNVTFDKQNNEKTTLEVKG 1030
Query: 729 VDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLT 788
+D+ RR++ L+ E V++ +L +D + LQ I+ +M++IR ++N + +
Sbjct: 1031 LDMKRREFCPLSKEVSTRVLNILL-----SDKDSESALQEIYAYMEEIRQKVENNEIRMD 1085
Query: 789 LLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+I +L+K P+ GGK + Q+ L GR
Sbjct: 1086 KYKINTRLSKDPKSYPGGKNMPAVQVALRMREAGR 1120
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 18/185 (9%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS 274
FF F ++ ++ LFGKV ++N S+ I +R++Y LP KE +
Sbjct: 314 FFWTDFTEVN---SSLILFGKVKTRKNQVVSAMAQI-NGFNRELYFLP-------KEGKT 362
Query: 275 IAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP-----AL 328
+ V+ E + +Y + +++ KKYAF LPG+P +EYL+V P +
Sbjct: 363 ASDVHQEIVPLLLDKYGLQSLRAKPETKKYAFELPGIPHEAEYLKVLLPYDTPKCKSITI 422
Query: 329 PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQM 387
P++L GDTFSHVFG + E+ +++RKI GP WL+ + + S C EVQ +
Sbjct: 423 PAELEGDTFSHVFGGNQNLFESFVVQRKIMGPCWLKISDGDFDAVQGASHCAIEVQIDSP 482
Query: 388 EKIRS 392
I +
Sbjct: 483 NHISA 487
Score = 40.4 bits (93), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 16/82 (19%)
Query: 126 DENVYEEVSEKEYTERVLKRQE---DDWIDDDGGDGYVEDG-------REIFDDDIEDVP 175
+ENVY+ + E +Y R KRQE DD+++DD G GYV+ G +E + D+ + V
Sbjct: 32 EENVYDLIDEDQY--RSKKRQELLRDDFVEDDDGSGYVDRGVDEWDQSQEFYSDEDDGVD 89
Query: 176 QKKEKHDKRKKNKNIQNPNAKD 197
K K K+NK +N KD
Sbjct: 90 AKSGK----KRNKTSKNNKGKD 107
>gi|452989094|gb|EME88849.1| hypothetical protein MYCFIDRAFT_35428 [Pseudocercospora fijiensis
CIRAD86]
Length = 1475
Score = 305 bits (781), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 175/431 (40%), Positives = 263/431 (61%), Gaps = 21/431 (4%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++K + + Y + + +LPL +TN+ GN +RTL G RSERNE++LLH F
Sbjct: 742 GLMNYVKMCEIDTFYTAALAFKRQLLPLTKVLTNLAGNSWARTLSGTRSERNEYILLHEF 801
Query: 461 HEKSYVLPDKQYGKN---KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
+ Y+ PDK +GK K E + +KK + GGLV EP+KG YDKFI++MD
Sbjct: 802 YRNKYICPDKVWGKGALKKTEEADAEGEEGADAKKKDKFKGGLVFEPEKGLYDKFILVMD 861
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT---GILPSEIKKLVESR 574
FNSLYPS+IQEYNICFTT+ SD + +PE DT GILP I+ LV R
Sbjct: 862 FNSLYPSLIQEYNICFTTV-----DRSDFAEEDDRVPEVPEDTSNKGILPRLIRTLVSRR 916
Query: 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
R+VK LMK + + D L +D++Q ALKLTANSMYGCLG+ SRF+A+PLAAL T+KGRE
Sbjct: 917 REVKKLMKDKSATEDQLATWDVKQMALKLTANSMYGCLGYTKSRFYARPLAALTTSKGRE 976
Query: 635 ILLNTKSLVENLN-YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
+L TK L E+ + VIYGDTDS+M++ NV++ K+G + + N+ Y+ LE++ID
Sbjct: 977 VLQATKDLAESAHALRVIYGDTDSVMVNTNVDNILDALKMGKEFQKSVNERYELLEIEID 1036
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
+++ +LL KKKYAA+ + + ++KG+D+ RR++ QL+ E K +++ +L
Sbjct: 1037 HIFRRLLLHAKKKYAAIQMVDTGDNTWKEKLDVKGLDMKRREYCQLSKETSKELLNHLLS 1096
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQ 809
+ + + IH+H++++ + N +P+ I QL K P+ G + Q
Sbjct: 1097 GE-----EPEVVVSKIHDHLRQLGEKMRNKEIPVHKYTIYTQLGKNPKDYPNGSTMPAVQ 1151
Query: 810 IRLSRNRRGRR 820
+ L R +G++
Sbjct: 1152 VALKRMAKGKQ 1162
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 105/191 (54%), Gaps = 9/191 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ R F+ D E G++ LFGKV + + SC V V NI RK+Y LPR
Sbjct: 337 EDDGSLRFFWTDYTE----VNGSLCLFGKVKNRRMGGYVSCFVKVDNILRKLYFLPREHR 392
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
K T E + + VY E DQ+ T+ K+ K + +KYAF LPG+P +EYL++ Y
Sbjct: 393 QKGGKDTTEEIDFSDVYQEVDQLMTRNKVAMHKIKASTRKYAFELPGIPKEAEYLKLLYP 452
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYE 381
PA+ +D G+TFSHVFGT T+ E +L + I GP WL A+ + SWCK E
Sbjct: 453 YDKPAISTDYRGETFSHVFGTNTALFEQFVLWKNIMGPCWLSIEGADFNAVNNASWCKLE 512
Query: 382 VQCNQMEKIRS 392
+Q ++ + I +
Sbjct: 513 LQVSRPKGITT 523
Score = 43.1 bits (100), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 114 GQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGREIFDDD 170
G+ YE E++YE V ++ Y + V R +DD++ DD G+GY +DGRE + D+
Sbjct: 19 GKTAFDDYEVQEAESIYETVDDEGYKKVVRSRLDQDDFVVDDNGEGYADDGREDWQDE 76
>gi|6015009|sp|O00874.1|DPOLA_LEIDO RecName: Full=DNA polymerase alpha catalytic subunit
gi|2138288|gb|AAC47538.1| DNA polymerase alpha catalytic subunit [Leishmania donovani]
Length = 1339
Score = 305 bits (781), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 181/399 (45%), Positives = 254/399 (63%), Gaps = 27/399 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y +N K
Sbjct: 658 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQNFKR 716
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E GK +KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 717 GRDDEEEEDGK--RKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 774
Query: 539 RMLQDSDITT----LCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 775 ESGSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKIEKDANN 834
Query: 590 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN-- 647
L + +IRQKALKLTANSMYGCLGF SRF AQPLA LVT +GR L +T L+ LN
Sbjct: 835 LAL-LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLALQSTVDLIPQLNPS 893
Query: 648 YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
VIYGDTDS+MI + ND +V +G +K++ NK Y+ LE+DIDGV++ +LLLKKKK
Sbjct: 894 LRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDIDGVFRAILLLKKKK 953
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD---EQSYTDYSLD 763
YAAL+++ +E+KG+D+VRRDW L+ V+S++L+ + DY +
Sbjct: 954 YAALTVTDWQGEGKTYKKEVKGLDMVRRDWCPLSKCVCDSVLSRVLNAEGSEDILDYVM- 1012
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ ++++ E ++ R LDN FV I+K LTK PE
Sbjct: 1013 NYMRDVSEKVRAGRYTLDN-FV------ISKSLTKEPEA 1044
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 19/189 (10%)
Query: 214 MFFLDAFEDIYK---QPGTVYLFGKVFVKEN--NSHSSCCVIVQNIDRKIYLLPRSEHLK 268
++ DA E + PG+++LFGK+ V++N S+ SCCV V+N+ R +++LP++
Sbjct: 243 FYWFDAREQPHTLSVDPGSLFLFGKMAVEKNGRTSYLSCCVRVRNMYRSVFVLPKAGS-- 300
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPA 327
S V E + I I + + +E+ YAF +PGVP + +++ ++RY + P
Sbjct: 301 -----SQEDVVKEINDICRNQGIEQRRIKFVERYYAFEVPGVPHEKTQWAKLRYPGRYP- 354
Query: 328 LPSDLSGDTFSHVF---GTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQC 384
P + G F H+ G +S LE L++RK+KGPS+L +RIS C E
Sbjct: 355 -PLNAKG-PFRHILIIMGASSSLLELFLIKRKLKGPSFLRISGLVASANRISHCALEFSV 412
Query: 385 NQMEKIRSK 393
+ +R++
Sbjct: 413 ESPKNLRAE 421
>gi|398013311|ref|XP_003859848.1| DNA polymerase I alpha catalytic subunit, putative [Leishmania
donovani]
gi|322498065|emb|CBZ33141.1| DNA polymerase I alpha catalytic subunit, putative [Leishmania
donovani]
Length = 1340
Score = 305 bits (781), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 181/399 (45%), Positives = 254/399 (63%), Gaps = 27/399 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y +N K
Sbjct: 658 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQNFKR 716
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E GK +KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 717 GRDDEEEEDGK--RKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 774
Query: 539 RMLQDSDITT----LCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 775 ESGSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKIEKDANN 834
Query: 590 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN-- 647
L + +IRQKALKLTANSMYGCLGF SRF AQPLA LVT +GR L +T L+ LN
Sbjct: 835 LAL-LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLALQSTVDLIPQLNPS 893
Query: 648 YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
VIYGDTDS+MI + ND +V +G +K++ NK Y+ LE+DIDGV++ +LLLKKKK
Sbjct: 894 LRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDIDGVFRAILLLKKKK 953
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD---EQSYTDYSLD 763
YAAL+++ +E+KG+D+VRRDW L+ V+S++L+ + DY +
Sbjct: 954 YAALTVTDWQGEGKTYKKEVKGLDMVRRDWCPLSKCVCDSVLSRVLNAEGSEDILDYVM- 1012
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ ++++ E ++ R LDN FV I+K LTK PE
Sbjct: 1013 NYMRDVSEKVRAGRYTLDN-FV------ISKSLTKEPEA 1044
Score = 86.3 bits (212), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 19/189 (10%)
Query: 214 MFFLDAFEDIYK---QPGTVYLFGKVFVKEN--NSHSSCCVIVQNIDRKIYLLPRSEHLK 268
++ DA E + PG+++LFGK+ V++N S+ SCCV V+N+ R +++LP++
Sbjct: 243 FYWFDAREQPHTLSVDPGSLFLFGKMAVEKNGRTSYLSCCVRVRNMYRSVFVLPKAGS-- 300
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPA 327
S V E + I I + + +E+ YAF +PGVP + +++ ++RY + P
Sbjct: 301 -----SQEDVVKEINDICRNQGIEQRRIKFVERYYAFEVPGVPHEKTQWAKLRYPGRYP- 354
Query: 328 LPSDLSGDTFSHVF---GTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQC 384
P + G F H+ G +S LE L++RK+KGPS+L +RIS C E
Sbjct: 355 -PLNAKG-PFRHILIIMGASSSLLELFLIKRKLKGPSFLRISGLVASANRISHCALEFSV 412
Query: 385 NQMEKIRSK 393
+ +R++
Sbjct: 413 ESPKNLRAE 421
>gi|258577025|ref|XP_002542694.1| hypothetical protein UREG_02210 [Uncinocarpus reesii 1704]
gi|237902960|gb|EEP77361.1| hypothetical protein UREG_02210 [Uncinocarpus reesii 1704]
Length = 1460
Score = 305 bits (781), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 256/402 (63%), Gaps = 8/402 (1%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++ + +I ++ +L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 746 GLMNYVSHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 805
Query: 461 HEKSYVLPDKQYGKNKKEGEET-GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK GK++ + EE G+ + +KK Y GGLV EP+KG YDK++++MDFN
Sbjct: 806 YRNKYICPDKYSGKSQPKMEEHEGDDDGADKKKKDKYKGGLVFEPEKGLYDKYVLVMDFN 865
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQEYNICFTT+ ++ +++ +P Q GILP I LV RR+VK
Sbjct: 866 SLYPSIIQEYNICFTTVNRELVSENENEEKVPRVPTDQAQ-GILPRLISTLVSRRREVKK 924
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK + + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREILLNT
Sbjct: 925 LMKNKRATPEELALWDTKQLALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILLNT 984
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E VIYGDTDS+MI+ N ++ + K+G K N YK LE+DID V++ +
Sbjct: 985 KELAEKNQLRVIYGDTDSVMINTNADNVEEALKVGRDFKRLVNDSYKLLEIDIDNVFRRL 1044
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++++IL +
Sbjct: 1045 LLHAKKKYAAINMTEV-DGKYVDHLEVKGLDMKRREYCALSKEVSSKLLTEILSGE---- 1099
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L ++++++ + + +P+ I +L+K P+
Sbjct: 1100 -DTEVVLGKVYDYLRDLAQKMKEFTIPVQKYVIFTKLSKRPD 1140
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/183 (41%), Positives = 103/183 (56%), Gaps = 6/183 (3%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR-SEHLKTK 270
R+F+ D E G + LFGKV K + S V V NI RK+Y LPR + T
Sbjct: 350 LRLFWFDYTE----VNGALCLFGKVKNKRTGKYVSAFVKVDNILRKLYFLPRKHDGQNTD 405
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
E I VY E D++ T+ ++ K + E+KYAF LP +P ++YL++ YS PALP
Sbjct: 406 EEADIENVYQEVDRLMTKLRVGTHKIKPCERKYAFELPDIPKEAKYLKLMYSYAKPALPI 465
Query: 331 DLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQMEK 389
D+ G+TFSHVFGT TS E +L + I GP WL+ +A+ + SWCK E Q + E
Sbjct: 466 DVQGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEDADFTAINGASWCKLECQVSDPEL 525
Query: 390 IRS 392
I S
Sbjct: 526 ISS 528
Score = 46.6 bits (109), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGGDGYV 160
A +L+ L+ G K YE + ++YEEV E+ Y + V +R + DD++ DD G+GY
Sbjct: 6 AKLAELRALRASGKKRLATYEVEEEGDIYEEVDEEGYKKVVRQRLDRDDFVVDDNGEGYA 65
Query: 161 EDGREIFD 168
+DGRE +D
Sbjct: 66 DDGREEWD 73
>gi|403341362|gb|EJY69984.1| DNA polymerase alpha catalytic subunit [Oxytricha trifallax]
Length = 1517
Score = 305 bits (781), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 190/430 (44%), Positives = 259/430 (60%), Gaps = 38/430 (8%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ I T + I++M L ++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 769 LFSLIDHTEKDAYLTIQLMNHLAIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 828
Query: 462 EKSYVLPDKQYGKNK-----------KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+K ++LPDK+ K +E E KG RKKAAY+GGLV+EPK GFYD
Sbjct: 829 KKKFILPDKKAPNAKDFKRNMFADEFEEAEVGKGPKKGGKRKKAAYAGGLVIEPKAGFYD 888
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY--------------- 552
I+L+DFNSLYPSIIQEYN+CFTT+ P + S++ + +
Sbjct: 889 NIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSEVKSQFKAAGTDANEGNEVEEAD 948
Query: 553 LPEHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG 610
LP+ V+ +LP+ ++ LV+ R+ VK MK + L Q +IRQKA+KLTANSMYG
Sbjct: 949 LPDKNVNVKDAVLPNVLRDLVQKRKAVKEKMKNEK-DAVKLSQLEIRQKAIKLTANSMYG 1007
Query: 611 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDS 669
CLGF +SRF AQ +AAL+T GR+ LL TK + EN L + V+YGDTDS+MI+ N
Sbjct: 1008 CLGFGSSRFHAQAIAALITKTGRDTLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQ 1067
Query: 670 VFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGV 729
++G ++K+E N LYK LE++IDGV+K +LLLKKKKYAAL QE+KG+
Sbjct: 1068 SLEMGKRLKAEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALKYEGFGTPDAKVVQEVKGL 1127
Query: 730 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
D+VRRDW L+ G FV++QIL + D L N++E++ I + N + L
Sbjct: 1128 DMVRRDWCPLSKNVGNFVLNQILSGKQREDVVL-----NLNEYLSDIGEKMKNNGITLDQ 1182
Query: 790 LEITKQLTKA 799
ITKQLTKA
Sbjct: 1183 FIITKQLTKA 1192
Score = 95.1 bits (235), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 125/254 (49%), Gaps = 33/254 (12%)
Query: 194 NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGT-VYLFGKVFVKENNSHSSCCVIVQ 252
N ++ LPL +EN +++DA E+ GT +Y+FGK++ + SC + V
Sbjct: 347 NTQEFPLPL---NENG-TLSFYWIDAHEE---NNGTDLYIFGKIYQPQVRQFVSCSMKVN 399
Query: 253 NIDRKIYLLP------RSEHLKTKEPVSIAQVYSEFDQIATQ--YKILDFKSRKIEKKYA 304
+ R++Y LP R +E + V E D I + +I ++ + + +KYA
Sbjct: 400 GMQRELYALPKMRGKARGALTVEEEKEQVRAVMMELDDIRKKRFPQISKWRCKPVNRKYA 459
Query: 305 FNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE 364
F +P ++L+++Y + P LPS + G+TF +FG+ S LE +L+RKI+GP W+
Sbjct: 460 FEMPIQHGEHQFLKIKYDSTMPPLPSTIQGNTFECIFGSTQSMLELFILKRKIRGPCWMT 519
Query: 365 FPEAEKFPSRI-----SWCKYEVQCNQMEKIR------SKQGLIYLIGIVEFIKFT--ML 411
K P+++ +WC+ E+ + + + +KQ L L + K T
Sbjct: 520 I----KNPTKVTDFKKTWCRQEIVIDNPKNVEVTLEDLNKQELPPLTSLTFSFKTTRAQQ 575
Query: 412 HSSYIIKIMCELNV 425
+++ I I C +N
Sbjct: 576 NTNEIAMISCLINT 589
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 104 AAFQKLKDLKGQGVKHKYEFTADE--NVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVE 161
A +L+ + G K ++ DE +++E+ + EY + +R+ DD+I DD G GY +
Sbjct: 24 GALAQLRAAREGGSKRTDQYQVDEAKKIFDEIDDDEYDKIQDQRKNDDFIVDDDGYGYRD 83
Query: 162 DGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNA 195
G EI++ D D P+ K KRK + N Q+ A
Sbjct: 84 HGGEIWERD--DHPEDGGKKKKRKLDPNEQSITA 115
>gi|146082971|ref|XP_001464643.1| putative DNA polymerase I alpha catalytic subunit [Leishmania
infantum JPCM5]
gi|134068736|emb|CAM67041.1| putative DNA polymerase I alpha catalytic subunit [Leishmania
infantum JPCM5]
Length = 1340
Score = 305 bits (780), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 181/399 (45%), Positives = 254/399 (63%), Gaps = 27/399 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y +N K
Sbjct: 658 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQNFKR 716
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E GK +KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 717 GRDDEEEEDGK--RKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 774
Query: 539 RMLQDSDITT----LCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 775 ESGSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKIEKDANN 834
Query: 590 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN-- 647
L + +IRQKALKLTANSMYGCLGF SRF AQPLA LVT +GR L +T L+ LN
Sbjct: 835 LAL-LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLALQSTVDLIPQLNPS 893
Query: 648 YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
VIYGDTDS+MI + ND +V +G +K++ NK Y+ LE+DIDGV++ +LLLKKKK
Sbjct: 894 LRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDIDGVFRAILLLKKKK 953
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD---EQSYTDYSLD 763
YAAL+++ +E+KG+D+VRRDW L+ V+S++L+ + DY +
Sbjct: 954 YAALTVTDWQGEGKTYKKEVKGLDMVRRDWCPLSKCVCDSVLSRVLNAEGSEDILDYVM- 1012
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ ++++ E ++ R LDN FV I+K LTK PE
Sbjct: 1013 NYMRDVSEKVRAGRYTLDN-FV------ISKSLTKEPEA 1044
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 102/189 (53%), Gaps = 19/189 (10%)
Query: 214 MFFLDAFEDIYK---QPGTVYLFGKVFVKEN--NSHSSCCVIVQNIDRKIYLLPRSEHLK 268
++ DA E + PG+++LFGK+ V++N S+ SCCV V+N+ R +++LP++
Sbjct: 243 FYWFDAREQPHTLSVDPGSLFLFGKMAVEKNGRTSYLSCCVRVRNMYRSVFVLPKAGS-- 300
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPA 327
S V E + I I + + +E+ YAF +PGVP + +++ ++RY + P
Sbjct: 301 -----SQEDVVKEINDICRNQGIEQRRIKFVERYYAFEVPGVPHEKTQWAKLRYPGRYP- 354
Query: 328 LPSDLSGDTFSHVF---GTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQC 384
P + G F H+ G +S LE L++RK+KGPS+L +RIS C E
Sbjct: 355 -PLNAKG-PFRHILIIMGASSSLLELFLIKRKLKGPSFLRISGLVASANRISHCALEFSV 412
Query: 385 NQMEKIRSK 393
+ + +R++
Sbjct: 413 DSPKNLRAE 421
>gi|226289752|gb|EEH45236.1| DNA polymerase alpha catalytic subunit [Paracoccidioides brasiliensis
Pb18]
Length = 1459
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 256/402 (63%), Gaps = 8/402 (1%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ +I + +I ++ +L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 744 GLMNYISHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGKNKKEGEETGE-ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK GK ++ + E + +KK Y GGLV EP++G YDK+I++MDFN
Sbjct: 804 YRNKYICPDKYAGKYQQMSQANEEDEDGTGKKKKDKYKGGLVFEPERGLYDKYILVMDFN 863
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ ++ +++ +P Q GILP I LV RR+VK
Sbjct: 864 SLYPSIIQEFNICFTTVDRALVAENENEEKVPEVPTEQA-PGILPRLIATLVNRRREVKK 922
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK S + L +D +Q ALKLTANSMYGCLG+ SRF+A+ LA L T+KGREIL +T
Sbjct: 923 LMKDKRASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARSLAMLTTSKGREILRST 982
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E+ +VIYGDTDS+MI+ N ++ + K+GN K N+ YK LE+DID V++ +
Sbjct: 983 KELAESNQLQVIYGDTDSVMINTNADNIEEALKVGNTFKRLVNERYKLLEIDIDNVFRRL 1042
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++++IL
Sbjct: 1043 LLHAKKKYAAINMTEV-DGKYVDQLEVKGLDMKRREYCALSKEVSSKLLNEILSGD---- 1097
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L +H++++++ + +P+ I +L+K P+
Sbjct: 1098 -DPDVVLTKVHDYLRELTEKMKEFAIPVQKYVIYTKLSKGPD 1138
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 181 HDKRKKNKNIQNPNAKDD------SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFG 234
+D K + +P A D + P A + + +F F+LD E G + LFG
Sbjct: 309 NDVTSKLNVLSSPAASDFKTFGKLAAPDAVEEDGSLLF--FWLDYVE----INGNLCLFG 362
Query: 235 KVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFDQIATQYK 290
KV K++ S+ S V V NI RK+Y LPR ++ T+E + + VY E ++ + K
Sbjct: 363 KVKNKKSGSYVSAFVKVDNILRKLYFLPRQYRVRHGCETEEEIDMEDVYKEVAELMSAAK 422
Query: 291 ILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLEN 350
+ K ++ +KYAF LP +P + YL++ YS LP D+ G+TFSHVFGT T+ E
Sbjct: 423 VTKHKIKESVRKYAFELPDIPKQATYLKLMYSYDSSPLPVDVKGETFSHVFGTNTALFEQ 482
Query: 351 LLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQMEKI 390
+L + I GP WL+ A+ + SWCK E Q +Q + I
Sbjct: 483 FVLWKNIMGPCWLKLGNADFTAVNGASWCKLECQVSQPKLI 523
Score = 48.1 bits (113), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 18/104 (17%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE + ++Y+EV E+ Y + V KR +DD++ DD G+GY
Sbjct: 6 AKLAELRALRASGKKRLTTYEIEDEGDIYDEVDEEGYKKLVRKRLDQDDFVIDDTGEGYA 65
Query: 161 EDGREIFDD--------DIEDVP-------QKKEKHDKRKKNKN 189
+DGRE ++D D +++P +K+E+ D+RK+ N
Sbjct: 66 DDGREEWNDSRSYYSDSDGDELPLKGKAAKRKREEDDQRKEKIN 109
>gi|152002407|gb|ABS19604.1| DNA polymerase alpha [Sterkiella histriomuscorum]
Length = 1516
Score = 304 bits (779), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 189/430 (43%), Positives = 259/430 (60%), Gaps = 38/430 (8%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ I T + I++M L ++PL Q+TN+ GB+ R+L R+ERNE LLLH F
Sbjct: 768 LFSLIDHTEKDAYLTIQLMNHLAIIPLTKQLTNIAGBLWFRSLQNARAERNEMLLLHEFK 827
Query: 462 EKSYVLPDKQYGKNK-----------KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+K ++LPDK+ K +E E KG RKKAAY+GGLV+EPK GFYD
Sbjct: 828 KKKFILPDKKAPNAKDFKRNMFADEFEEAEVGKGPKKGGKRKKAAYAGGLVIEPKAGFYD 887
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY--------------- 552
I+L+DFNSLYPSIIQEYN+CFTT+ P + S++ + +
Sbjct: 888 NIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSEVKSQFKAAGTDANEGNEVEEAD 947
Query: 553 LPEHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG 610
LP+ V+ +LP+ ++ LV+ R+ VK MK + L Q +IRQKA+KLTANSMYG
Sbjct: 948 LPDKNVNVKDAVLPNVLRDLVQKRKAVKEKMKNEK-DAVKLSQLEIRQKAIKLTANSMYG 1006
Query: 611 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDS 669
CLGF +SRF AQ +AAL+T GR+ LL TK + EN L + V+YGDTDS+MI+ N
Sbjct: 1007 CLGFGSSRFHAQAIAALITKTGRDTLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQ 1066
Query: 670 VFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGV 729
++G ++K+E N LYK LE++IDGV+K +LLLKKKKYAAL QE+KG+
Sbjct: 1067 SLEMGKRLKAEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALKYEGFGTPDAKVVQEVKGL 1126
Query: 730 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
D+VRRDW L+ G FV++QIL + D L N++E++ I + N + L
Sbjct: 1127 DMVRRDWCPLSKNVGNFVLNQILSGKQREDVVL-----NLNEYLSDIGEKMKNNGITLDQ 1181
Query: 790 LEITKQLTKA 799
ITKQLTKA
Sbjct: 1182 FIITKQLTKA 1191
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 125/254 (49%), Gaps = 33/254 (12%)
Query: 194 NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGT-VYLFGKVFVKENNSHSSCCVIVQ 252
N ++ LPL +EN +++DA E+ GT +Y+FGK++ + SC + V
Sbjct: 346 NTQEFPLPL---NENG-TLSFYWIDAHEE---NNGTDLYIFGKIYQPQMRQFVSCSMKVN 398
Query: 253 NIDRKIYLLP------RSEHLKTKEPVSIAQVYSEFDQIATQ--YKILDFKSRKIEKKYA 304
+ R++Y LP R +E + V E D I + +I ++ + + +KYA
Sbjct: 399 GMQRELYALPKMRGKARGALTVEEEKQQVRAVMMELDDIRKKRFPQISKWRCKPVNRKYA 458
Query: 305 FNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE 364
F +P ++L+++Y + P LPS + G+TF +FG+ S LE +L+RKI+GP W+
Sbjct: 459 FEMPIQHGEHQFLKIKYDSTMPPLPSTIQGNTFECIFGSTQSMLELFILKRKIRGPCWMT 518
Query: 365 FPEAEKFPSRI-----SWCKYEVQCNQMEKIR------SKQGLIYLIGIVEFIKFT--ML 411
K P+++ +WC+ E+ + + + +KQ L L + K T
Sbjct: 519 I----KNPTKVTDFKKTWCRQEIVIDNPKNVEVTLEDLNKQELPPLTSLTFSFKTTRAQQ 574
Query: 412 HSSYIIKIMCELNV 425
+++ I I C +N
Sbjct: 575 NTNEIAMISCLINT 588
Score = 42.7 bits (99), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 104 AAFQKLKDLKGQGVKHKYEFTADE--NVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVE 161
A +L+ + G K ++ DE +++E+ + EY + +R+ DD+I DD G GY +
Sbjct: 24 GALAQLRAAREGGSKRTDQYQVDEAKKIFDEIDDDEYDKIQDQRKNDDFIVDDDGYGYRD 83
Query: 162 DGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNA 195
G EI++ D D P+ K KRK + N Q+ A
Sbjct: 84 HGGEIWERD--DHPEDGGKKKKRKLDPNEQSITA 115
>gi|225682359|gb|EEH20643.1| DNA polymerase alpha catalytic subunit A [Paracoccidioides
brasiliensis Pb03]
Length = 1459
Score = 304 bits (778), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 256/402 (63%), Gaps = 8/402 (1%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ +I + +I ++ +L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 744 GLMNYISHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGKNKKEGEETGE-ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK GK ++ + E + +KK Y GGLV EP++G YDK+I++MDFN
Sbjct: 804 YRNKYICPDKCAGKYQQMSQANEEDEDGTGKKKKDKYKGGLVFEPERGLYDKYILVMDFN 863
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ ++ +++ +P Q GILP I LV RR+VK
Sbjct: 864 SLYPSIIQEFNICFTTVDRALVAENENEEKVPEVPTEQA-PGILPRLIATLVNRRREVKK 922
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK S + L +D +Q ALKLTANSMYGCLG+ SRF+A+ LA L T+KGREIL +T
Sbjct: 923 LMKDKRASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARSLAMLTTSKGREILRST 982
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E+ +VIYGDTDS+MI+ N ++ + K+GN K N+ YK LE+DID V++ +
Sbjct: 983 KELAESNQLQVIYGDTDSVMINTNADNIEEALKVGNTFKRLVNERYKLLEIDIDNVFRRL 1042
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++++IL
Sbjct: 1043 LLHAKKKYAAINMTEV-DGKYVDQLEVKGLDMKRREYCALSKEVSSKLLNEILSGD---- 1097
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L +H++++++ + +P+ I +L+K P+
Sbjct: 1098 -DPDVVLTKVHDYLRELTEKMKEFAIPVQKYVIYTKLSKGPD 1138
Score = 123 bits (309), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 117/221 (52%), Gaps = 17/221 (7%)
Query: 181 HDKRKKNKNIQNPNAKDD------SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFG 234
+D K + +P A D + P A + + +F F+LD E G + LFG
Sbjct: 309 NDVTSKLNVLSSPAASDFKTFGKLAAPDAVEEDGSLLF--FWLDYVE----INGNLCLFG 362
Query: 235 KVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFDQIATQYK 290
KV K++ S+ S V V NI RK+Y LPR ++ T+E + + VY E ++ + K
Sbjct: 363 KVKNKKSGSYVSAFVKVDNILRKLYFLPRQYRVRHGRETEEEIDMEDVYKEVAELMSAAK 422
Query: 291 ILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLEN 350
+ K ++ +KYAF LP +P + YL++ YS LP D+ G+TFSHVFGT T+ E
Sbjct: 423 VTKHKIKESVRKYAFELPDIPKQATYLKLMYSYDSSPLPVDVKGETFSHVFGTNTALFEQ 482
Query: 351 LLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQMEKI 390
+L + I GP WL+ A+ + SWCK E Q +Q + I
Sbjct: 483 FVLWKNIMGPCWLKLENADFTAVNGASWCKLECQVSQPKLI 523
Score = 48.1 bits (113), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 18/104 (17%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE + ++Y+EV E+ Y + V KR +DD++ DD G+GY
Sbjct: 6 AKLAELRALRASGKKRLTTYEIEDEGDIYDEVDEEGYKKLVRKRLDQDDFVIDDTGEGYA 65
Query: 161 EDGREIFDD--------DIEDVP-------QKKEKHDKRKKNKN 189
+DGRE ++D D +++P +K+E+ D+RK+ N
Sbjct: 66 DDGREEWNDSRRYYSDSDGDELPLKGKAAKRKREEDDQRKEKIN 109
>gi|320590664|gb|EFX03107.1| DNA polymerase alpha catalytic [Grosmannia clavigera kw1407]
Length = 1510
Score = 303 bits (777), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 167/365 (45%), Positives = 240/365 (65%), Gaps = 19/365 (5%)
Query: 391 RSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSE 450
++K+GL+ +G +E + +I + + +LPL +TN+ GN +RTL G R+E
Sbjct: 756 KTKEGLLDYVGHLEADTY------FIAALGLRVQILPLTKVLTNLAGNSWARTLTGTRAE 809
Query: 451 RNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
RNE++LLH FH Y+ PDKQ K G GE + G+KK Y GGLV EP++G YD
Sbjct: 810 RNEYILLHEFHRNKYICPDKQ----KFRGRGQGEDDNADGKKKDKYKGGLVFEPERGLYD 865
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT--GILPSEIK 568
KF+++MDFNSLYPSIIQE+NICFTT+ L D + +PE + G+LP I
Sbjct: 866 KFVLVMDFNSLYPSIIQEFNICFTTVERAALSDEG-----DAVPEVPTEQSQGVLPRLIA 920
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
LV RRQVK+LMK +++ L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA LV
Sbjct: 921 TLVSRRRQVKSLMKDKTATAEELATWDIKQLALKLTANSMYGCLGYTQSRFYARPLAVLV 980
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL +TK L E+++ +VIYGDTDS+MI+ NV++ ++G + K N+ Y+ L
Sbjct: 981 TYKGREILRSTKELAESMSLQVIYGDTDSVMINANVDNVADAMRVGQEFKRTVNERYRLL 1040
Query: 689 -ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFV 747
DID V++ +LL KKKYAA+++ ++ GK + E+KG+D+ RR++ L+ E +
Sbjct: 1041 GGFDIDNVFRRILLQAKKKYAAINMVEV-GGKYVEKMEVKGLDMKRREYCALSKEMSTRI 1099
Query: 748 ISQIL 752
+++IL
Sbjct: 1100 LNEIL 1104
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 94/173 (54%), Gaps = 9/173 (5%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TK 270
F+ + +I+ G++ LFGKV K+ H S + + NI RK++ LPR + T
Sbjct: 359 FYWTDYTEIH---GSLCLFGKVLNKKTKKHVSSFLKIDNIQRKLFFLPRQRRSQDGEETG 415
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
+ VS+A VY E D + T+ + K++ +KYAF LP +P YL++ Y P + +
Sbjct: 416 DEVSMADVYGEVDALMTKMGVPQHKTKPCTRKYAFELPNIPKEGRYLKLLYPYTKPVI-A 474
Query: 331 DLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSR-ISWCKYEV 382
+ G T+SHVFGT T+ E +L + + GP WL+ +A + S CK EV
Sbjct: 475 EAGGVTYSHVFGTNTALFEQFVLWKNVMGPCWLKIEDANYSALKNASHCKLEV 527
Score = 42.7 bits (99), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 106 FQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVED 162
F++L+ L+ G K YE + +YE V + +Y V R +DD++ DD G+GY +D
Sbjct: 11 FEELRALRKAGKKAFDSYEVEDADKLYELVDDDQYKNIVRSRLNQDDFVVDDNGEGYADD 70
Query: 163 GREIFD 168
GRE +D
Sbjct: 71 GREEWD 76
>gi|343469847|emb|CCD17281.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 843
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 182/414 (43%), Positives = 256/414 (61%), Gaps = 29/414 (7%)
Query: 406 IKFTMLHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS 464
I +L+ + + + L+V+PL ++T + GN+ SRTL G RSER E+LLLHAFH
Sbjct: 145 ILLQLLNCAVLSFNVAVSLDVIPLTKRLTLLAGNLWSRTLYGARSERIEYLLLHAFHNLK 204
Query: 465 YVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPS 524
+V+PDK+ ++E + + ++ + ++K Y GG+VLEPK G Y ++I+L+DFNSLYPS
Sbjct: 205 FVVPDKK----RQEMKRGRQDDEDETKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPS 260
Query: 525 IIQEYNICFTTI------------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVE 572
+IQE+NIC+TTI P L T LP + ILP I+ LV+
Sbjct: 261 LIQEFNICYTTIERDENTVNADVPPPESLACLSCKT--AGLPSPCLHKCILPKVIRGLVD 318
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
SRR++K +MK + L M +IRQKALKLTANS+YGCLGF +SRF+AQPLA LVT +G
Sbjct: 319 SRREIKRIMKSEKDPNSLAM-LEIRQKALKLTANSVYGCLGFEHSRFYAQPLAELVTRQG 377
Query: 633 REILLNTKSLVENLN--YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLE 689
R L NT L+ ++ VIYGDTDS+MI + +D V +G +IK + N+ Y+ LE
Sbjct: 378 RLALQNTVELIPQISPSIRVIYGDTDSVMIQTGIKDDIGKVRNLGFEIKGKVNQRYQSLE 437
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
LDIDGV++ MLLL+KKKYAALS+ I +E+KG+D+VRRDW L+ V+
Sbjct: 438 LDIDGVFRAMLLLRKKKYAALSVVDWQAEGKIYKKEVKGLDMVRRDWCPLSQHVSDSVLK 497
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNG-FVPLTLLEITKQLTKAPEG 802
+IL+ + +D L + +MK I D+ +G PL I+K LTK PE
Sbjct: 498 RILNAEGG-----EDILDFVIRYMKDIAQDVRSGRTYPLEDFVISKSLTKEPES 546
>gi|312068656|ref|XP_003137316.1| hypothetical protein LOAG_01730 [Loa loa]
Length = 1409
Score = 303 bits (777), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 179/435 (41%), Positives = 257/435 (59%), Gaps = 65/435 (14%)
Query: 400 IGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHA 459
+ ++ FI + + + + I+ ELN LPL IQIT + G VLSRT++GGR+ERNE+LLLHA
Sbjct: 750 VQLIRFINNSWMDAWLSLAIIAELNALPLFIQITKIVGGVLSRTMLGGRAERNEYLLLHA 809
Query: 460 FHEKSYVLPDKQYGKNKKEGEETG------------EANKGKGRKKAAYSGGLVLEPKKG 507
F++ YV P+K Y + K+ +++G + K + +K Y GGLVL+PK G
Sbjct: 810 FNKAGYVPPNK-YQPDSKKRKQSGLKDTKSVDDDLEDYKKVQHNRKGQYVGGLVLDPKIG 868
Query: 508 FYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEI 567
YD F++L+DFNSLYPSIIQEYNICFTT+ + +++ L V+ GILP EI
Sbjct: 869 LYDTFVLLLDFNSLYPSIIQEYNICFTTVDMSKKDKNEMPEL-----PSDVNEGILPREI 923
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
+ LVE RR VK +MK L+ QYDIRQ LKLTANSMYGCLGF SRF+A+PLAAL
Sbjct: 924 RSLVERRRDVKRMMKSEKLTQQQRQQYDIRQMGLKLTANSMYGCLGFQQSRFYAKPLAAL 983
Query: 628 VTAKGRE------------------ILLNTKSLVENLNYEVIYGDTDSLMISCNV---ND 666
+TA+GRE IL++TK L+E Y VIYGDTDS+MI+ ++
Sbjct: 984 ITAQGRECFSRYGGSTRNDPIIVLQILMHTKDLIEKNGYSVIYGDTDSVMINTGFSERSE 1043
Query: 667 YDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEI 726
V K+GN++ +++ +K+KYA L++ N + +EI
Sbjct: 1044 LQRVKKLGNEV---------------------IVVTEKEKYAGLAVDL--NDERKTKREI 1080
Query: 727 KGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVP 786
KG+D+VRRD+S + + G ++ IL QS D+ + IH ++K+ D+ +
Sbjct: 1081 KGLDIVRRDYSFIVKQIGNEILDIILSVQSQNR---DEIIGQIHSRLRKLGKDIAQELLE 1137
Query: 787 LTLLEITKQLTKAPE 801
++L +I KQLT+ P
Sbjct: 1138 ISLFQIFKQLTRNPH 1152
Score = 139 bits (351), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 79/192 (41%), Positives = 113/192 (58%), Gaps = 7/192 (3%)
Query: 204 TDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR 263
T+ + + R ++LDAFED K PGTVYLFG++ + SCCVIV+NI R+++ LPR
Sbjct: 342 TNSKGESTLRFYWLDAFEDPIKIPGTVYLFGRLI--NDGLSESCCVIVKNIWRQVFFLPR 399
Query: 264 SEHLKTK---EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVR 320
+ L + + V + QV E +I + K R EKK+A+N VP ++ LEV
Sbjct: 400 EKLLINEVQTDEVDLTQVNEEVQKILRSMGVKVVKCRPCEKKFAYNDGVVPRSAQVLEVH 459
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
YS P L DLSG+TFSHVF T + +E LL+E +KGPSW+E + ++S+ K+
Sbjct: 460 YSFNDPRLSVDLSGETFSHVFNTTANAMERLLIETGMKGPSWVEISGCDVSSLQVSYVKH 519
Query: 381 E--VQCNQMEKI 390
E V QM+ I
Sbjct: 520 EFVVDMKQMKSI 531
>gi|240276502|gb|EER40014.1| DNA-directed DNA polymerase alpha [Ajellomyces capsulatus H143]
Length = 1458
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 252/401 (62%), Gaps = 8/401 (1%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ + + +I ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 744 GLMNYTNHCEADTYFIAALVLRLQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGKNKKEGEETGE-ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK GK ++ + E + +KK Y GGLV EP+KG YDK+I++MDFN
Sbjct: 804 YRNKYICPDKYAGKQQQMSQANDEDEDGTDKKKKDKYKGGLVFEPEKGLYDKYILVMDFN 863
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ + +++ +P+ Q GILP I LV RR+VK
Sbjct: 864 SLYPSIIQEFNICFTTVDRTSVVENENQENVPEVPKAQ-SMGILPRLIATLVNRRREVKK 922
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK S + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +T
Sbjct: 923 LMKDKRASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRST 982
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E+ +VIYGDTDS+MI+ N ++ + K+GN K N+ Y+ LE+DID V++ +
Sbjct: 983 KELAESNQLQVIYGDTDSVMINTNADNMEDALKVGNTFKRLVNERYQLLEIDIDNVFRRL 1042
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++ +IL +
Sbjct: 1043 LLHAKKKYAAINMTEV-DGKYVEQLEVKGLDMKRREYCALSKEVSSKLLHEILSGEDS-- 1099
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
D L +H++++ I + +PL I +L+K P
Sbjct: 1100 ---DVVLTKVHDYLRDITEKMKEYSIPLQKYVIYMKLSKRP 1137
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 103/182 (56%), Gaps = 9/182 (4%)
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----T 269
F+LD E G++ LFGKV K+ ++ S + N+ RK+Y LPR ++ T
Sbjct: 346 FFWLDYVE----VNGSLCLFGKVKNKKTGAYVSAFAKIDNVLRKLYFLPRKYRVRHGRET 401
Query: 270 KEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALP 329
+E + + VY+E D + ++ K KS+ +KYAF L GVP EYL+V Y PALP
Sbjct: 402 EEEIDMEDVYNEVDGLMSRTKAGTHKSKVSTRKYAFELAGVPKEGEYLKVMYLYDKPALP 461
Query: 330 SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQME 388
D+ G+TFS VFGT T+ E +L + I GP WL+ +A+ + SWCK E Q ++ +
Sbjct: 462 LDVKGETFSRVFGTNTALFEQFVLWKNIMGPCWLKLEDADFTAVNGASWCKLECQVSEPK 521
Query: 389 KI 390
I
Sbjct: 522 LI 523
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +LK L+ G K YE + ++Y+E+ E Y + V KR +DD++ DD G+GY
Sbjct: 6 AKLAELKALRAAGKKRLATYEVKDEGDIYDEIDEDGYKKLVRKRLDQDDFVIDDTGEGYA 65
Query: 161 EDGREIFDD 169
+DGRE ++D
Sbjct: 66 DDGREEWND 74
>gi|325091995|gb|EGC45305.1| DNA-directed DNA polymerase alpha [Ajellomyces capsulatus H88]
Length = 1458
Score = 303 bits (776), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 252/401 (62%), Gaps = 8/401 (1%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ + + +I ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 744 GLMNYTNHCEADTYFIAALVLRLQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGKNKKEGEETGE-ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK GK ++ + E + +KK Y GGLV EP+KG YDK+I++MDFN
Sbjct: 804 YRNKYICPDKYAGKQQQMSQANDEDEDGTDKKKKDKYKGGLVFEPEKGLYDKYILVMDFN 863
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ + +++ +P+ Q GILP I LV RR+VK
Sbjct: 864 SLYPSIIQEFNICFTTVDRTSVVENENQENVPEVPKAQ-SMGILPRLIATLVNRRREVKK 922
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK S + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +T
Sbjct: 923 LMKDKRASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRST 982
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E+ +VIYGDTDS+MI+ N ++ + K+GN K N+ Y+ LE+DID V++ +
Sbjct: 983 KELAESNQLQVIYGDTDSVMINTNADNMEDALKVGNTFKRLVNERYQLLEIDIDNVFRRL 1042
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++ +IL +
Sbjct: 1043 LLHAKKKYAAINMTEV-DGKYVEQLEVKGLDMKRREYCALSKEVSSKLLHEILSGEDS-- 1099
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
D L +H++++ I + +PL I +L+K P
Sbjct: 1100 ---DVVLTKVHDYLRDITEKMKEYSIPLQKYVIYMKLSKRP 1137
Score = 120 bits (300), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 103/182 (56%), Gaps = 9/182 (4%)
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----T 269
F+LD E G++ LFGKV K+ ++ S + N+ RK+Y LPR ++ T
Sbjct: 346 FFWLDYVE----VNGSLCLFGKVKNKKTGAYVSAFAKIDNVLRKLYFLPRKYRVRHGRET 401
Query: 270 KEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALP 329
+E + + VY+E D + ++ K KS+ +KYAF L GVP EYL+V Y PALP
Sbjct: 402 EEEIDMEDVYNEVDGLMSRTKAGTHKSKVSTRKYAFELAGVPKEGEYLKVMYLYDKPALP 461
Query: 330 SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQME 388
D+ G+TFS VFGT T+ E +L + I GP WL+ +A+ + SWCK E Q ++ +
Sbjct: 462 LDVKGETFSRVFGTNTALFEQFVLWKNIMGPCWLKLEDADFTAVNGASWCKLECQVSEPK 521
Query: 389 KI 390
I
Sbjct: 522 LI 523
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +LK L+ G K YE + ++Y+E+ E Y + V KR +DD++ DD G+GY
Sbjct: 6 AKLAELKALRAAGKKRLATYEVKDEGDIYDEIDEDGYKKLVRKRLDQDDFVIDDTGEGYA 65
Query: 161 EDGREIFDD 169
+DGRE ++D
Sbjct: 66 DDGREEWND 74
>gi|47118289|gb|AAT11255.1| DNA polymerase alpha [Holosticha sp. WJC-2003]
Length = 1483
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 188/409 (45%), Positives = 257/409 (62%), Gaps = 32/409 (7%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
I++M L+V+PL Q+TN+ GN+ R+L R+ERNE LLLH F +K ++LPDK+ NK
Sbjct: 765 IQLMFHLSVIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPDKKQLTNK 824
Query: 477 K--------EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQE 528
+ E E+ + KG RKKA YSGGLV+EPK GFYD I+L+DFNSLYPSIIQE
Sbjct: 825 ELKRGLFGEEDEQGDDKKKGGKRKKAQYSGGLVIEPKAGFYDNIILLLDFNSLYPSIIQE 884
Query: 529 YNICFTTI---PVRMLQDSDI------------TTLCEYLPE--HQVDTGILPSEIKKLV 571
YN+CFTT+ P + +DI LP+ + + +LP+ ++ LV
Sbjct: 885 YNLCFTTVNRRPTKNYNGTDIKNDFKGEGEEDNEEETVELPDKNTKANDAVLPNVLRDLV 944
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
+ R+ VK MK L Q +IRQKA+KLTANSMYGCLGF +SRF A+ +AAL+T
Sbjct: 945 QKRKAVKDKMKTEK-DPIKLQQLEIRQKAIKLTANSMYGCLGFASSRFHAKAIAALITRT 1003
Query: 632 GREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
GRE LL TK + EN L + V+YGDTDS+MI+ N ++G ++K+E N LYK LE+
Sbjct: 1004 GRETLLRTKDIAENKLGFNVVYGDTDSIMINTGCNQLQMALEMGKKLKAEVNCLYKCLEI 1063
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
+IDGV+K +LLLKKKKYAAL + QE+KG+D+VRRDW QL+ G +V++Q
Sbjct: 1064 EIDGVFKSLLLLKKKKYAALKYENWTTPDAKIVQEMKGLDMVRRDWCQLSKTVGNYVLAQ 1123
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
IL + + L N++E++ I + +PL ITKQLT+A
Sbjct: 1124 ILSGKQREEVVL-----NLNEYLSDIGQKMKACEIPLAEYIITKQLTRA 1167
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 15/232 (6%)
Query: 168 DDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQP 227
+DD + + Q++ + + K + N D LP D +++DA E+ Q
Sbjct: 304 EDDWQKIKQQQXNNQESVKIDSNAALNQYDYPLPFNPDGS----LSFYWIDAHEENNGQ- 358
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLP------RSEHLKTKEPVSIAQVYSE 281
+Y+FGK++ E S SC + V + R++Y LP RS K +E + ++ E
Sbjct: 359 -DIYIFGKIYQPEVKSFVSCALKVNGMQREMYALPKIKNKARSALSKEEEDKQVMNIFHE 417
Query: 282 FDQIATQ--YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSH 339
D I + +I +K + + +KYAF +P ++L+V+Y P+LP L+G+TF
Sbjct: 418 LDDIRKKRFTQITKWKCKPVMRKYAFEMPIQHGEHKFLKVKYDCTMPSLPPGLTGNTFEC 477
Query: 340 VFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCNQMEKI 390
VFG S LE L+L+RKIKGP W +K + +WC+ E+ N ++I
Sbjct: 478 VFGANQSMLELLILKRKIKGPCWFTLKSPQKVTDFKKTWCRQEIFINDPKQI 529
>gi|225555681|gb|EEH03972.1| DNA-directed DNA polymerase alpha [Ajellomyces capsulatus G186AR]
Length = 1458
Score = 303 bits (775), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 252/401 (62%), Gaps = 8/401 (1%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ + + +I ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 744 GLMNYTNHCEADTYFIAALVLRLQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGKNKKEGEETGE-ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK GK ++ + E + +KK Y GGLV EP+KG YDK+I++MDFN
Sbjct: 804 YRNKYICPDKYAGKQQQMSQANEEDEDGADKKKKDKYKGGLVFEPEKGLYDKYILVMDFN 863
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ + +++ +P+ Q GILP I LV RR+VK
Sbjct: 864 SLYPSIIQEFNICFTTVDRTSVVENENQENVPEVPKAQ-SMGILPRLIATLVNRRREVKK 922
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK S + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +T
Sbjct: 923 LMKDKRASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRST 982
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E+ +VIYGDTDS+MI+ N ++ + K+GN K N+ Y+ LE+DID V++ +
Sbjct: 983 KELAESNQLQVIYGDTDSVMINTNADNMEDALKVGNTFKRLVNERYQLLEIDIDNVFRRL 1042
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++ +IL +
Sbjct: 1043 LLHAKKKYAAINMTEV-DGKYVEQLEVKGLDMKRREYCALSKEVSSKLLHEILSGEDS-- 1099
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
D L +H++++ I + +PL I +L+K P
Sbjct: 1100 ---DVVLTKVHDYLRDITEKMKEYSIPLQKYVIYMKLSKRP 1137
Score = 120 bits (300), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 103/182 (56%), Gaps = 9/182 (4%)
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----T 269
F+LD E G++ LFGKV K+ ++ S + N+ RK+Y LPR ++ T
Sbjct: 346 FFWLDYVE----VNGSLCLFGKVKNKKTGAYVSAFAKIDNVLRKLYFLPRKYRVRHGRET 401
Query: 270 KEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALP 329
+E + + VY+E D + ++ K KS+ +KYAF L VP EYL+V YS PALP
Sbjct: 402 EEEIDMEDVYNEVDDLMSRTKAGTHKSKVSTRKYAFELADVPKEGEYLKVMYSYDKPALP 461
Query: 330 SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQME 388
D+ G+TFS VFGT T+ E +L + I GP WL+ +A+ + SWCK E Q ++ +
Sbjct: 462 LDVKGETFSRVFGTNTALFEQFVLWKNIMGPCWLKLEDADFTAVNGASWCKLECQVSEPK 521
Query: 389 KI 390
I
Sbjct: 522 LI 523
Score = 47.0 bits (110), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +LK L+ G K YE + ++Y+E+ E Y + V KR +DD++ DD G+GY
Sbjct: 6 AKLAELKALRAAGKKRLATYEVKDEGDIYDEIDEDGYKKLVRKRLDQDDFVIDDTGEGYA 65
Query: 161 EDGREIFDD 169
+DGRE ++D
Sbjct: 66 DDGREEWND 74
>gi|154271065|ref|XP_001536386.1| hypothetical protein HCAG_08707 [Ajellomyces capsulatus NAm1]
gi|150409609|gb|EDN05053.1| hypothetical protein HCAG_08707 [Ajellomyces capsulatus NAm1]
Length = 1458
Score = 302 bits (774), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 252/401 (62%), Gaps = 8/401 (1%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ + + +I ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 744 GLMNYTNHCEADTYFIAALVLRLQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGKNKKEGEETGE-ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK GK ++ + E + +KK Y GGLV EP+KG YDK+I++MDFN
Sbjct: 804 YRNKYICPDKYAGKQQQMSQTNEEDEDGTDKKKKDKYKGGLVFEPEKGLYDKYILVMDFN 863
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ + +++ +P+ Q GILP I LV RR+VK
Sbjct: 864 SLYPSIIQEFNICFTTVDRTSVVENENQENVPEVPKAQ-SMGILPRLIATLVNRRREVKK 922
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK S + L +D +Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +T
Sbjct: 923 LMKDKRASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILRST 982
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E+ +VIYGDTDS+MI+ N ++ + K+GN K N+ Y+ LE+DID V++ +
Sbjct: 983 KELAESNQLQVIYGDTDSVMINTNADNMEDALKVGNTFKRLVNERYQLLEIDIDNVFRRL 1042
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++ +IL +
Sbjct: 1043 LLHAKKKYAAINMTEV-DGKYVEQLEVKGLDMKRREYCALSKEVSSKLLHEILSGEDS-- 1099
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
D L +H++++ I + +PL I +L+K P
Sbjct: 1100 ---DVVLTKVHDYLRDITKKIKEYSIPLQKYVIYMKLSKRP 1137
Score = 116 bits (291), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 102/182 (56%), Gaps = 9/182 (4%)
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----T 269
F+LD E G++ LFGKV K+ ++ S + N+ RK+Y LPR ++ T
Sbjct: 346 FFWLDYVE----VNGSLCLFGKVKNKKTGAYVSAFAKIDNVLRKLYFLPRKYRVRHGRET 401
Query: 270 KEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALP 329
+E + + VY+E D + ++ K KS+ +KYAF L VP EYL+V YS PAL
Sbjct: 402 EEEIDMEDVYNEVDDLMSRTKAGTHKSKVSTRKYAFELADVPKEGEYLKVMYSYDKPALA 461
Query: 330 SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQME 388
D+ G+TFS VFGT T+ E +L + I GP WL+ +A+ + SWCK E Q ++ +
Sbjct: 462 FDVKGETFSRVFGTNTALFEQFVLWKNIMGPCWLKLEDADFTAVNGASWCKLECQVSEPK 521
Query: 389 KI 390
I
Sbjct: 522 LI 523
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +LK L+ G K YE + N+Y+E+ E Y + V KR +DD++ DD G+GY
Sbjct: 6 AKLAELKALRAAGKKRLATYEVKDEGNIYDEIDEDGYKKLVRKRLDQDDFVIDDTGEGYA 65
Query: 161 EDGREIFDD 169
+DGRE ++D
Sbjct: 66 DDGREEWND 74
>gi|363753528|ref|XP_003646980.1| hypothetical protein Ecym_5409 [Eremothecium cymbalariae DBVPG#7215]
gi|356890616|gb|AET40163.1| hypothetical protein Ecym_5409 [Eremothecium cymbalariae DBVPG#7215]
Length = 1475
Score = 302 bits (774), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 258/426 (60%), Gaps = 22/426 (5%)
Query: 406 IKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSY 465
+K + S +I + +LPL Q+TN+ GN +TL G R+ RNEF+LLH F+ +Y
Sbjct: 750 LKENIFASKIAAEIAFRIQILPLTKQLTNLAGNAWCQTLGGTRAGRNEFILLHEFNRSNY 809
Query: 466 VLPDKQY--GKNKKE--GEETGEANKGK----GRKKAAYSGGLVLEPKKGFYDKFIILMD 517
++PDK+ +N K+ ET +N G KK Y GGLV EP+KG + ++++MD
Sbjct: 810 IVPDKETKQMRNSKQHKANETTTSNDGNQTSASNKKPKYQGGLVFEPEKGLHKNYVLVMD 869
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQE+NICFTT+ DI L E +P + G+LP + LV+ RR+V
Sbjct: 870 FNSLYPSIIQEFNICFTTVE---RDPGDIEQLPE-VPPSGIVQGVLPKLLANLVQRRREV 925
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + DIRQ+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+
Sbjct: 926 KKLMKL-EIDPQKKAECDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILM 984
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
NT+ L E+L VIYGDTDS+MI ++Y IG K N+ YK LE+DID V+K
Sbjct: 985 NTRQLAESLALSVIYGDTDSVMIDTGCDNYKESVNIGENFKKLVNERYKLLEIDIDNVFK 1044
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAAL++ G S E+KG+D+ RR++ L+ E V++ IL
Sbjct: 1045 KLLLHAKKKYAALNVGFDKLGNETSSLEVKGLDMRRREYCPLSKEVSTQVLNTIL----- 1099
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK----APEGGKVCITQIRLS 813
+D L+ LQ ++E M++IR+ ++N + + +I +L+K P G + Q+ L
Sbjct: 1100 SDKDLESALQEVYEFMEEIRSKIENNEIRVDKYKINTKLSKDPKSYPNGKSMPAVQVALK 1159
Query: 814 RNRRGR 819
G+
Sbjct: 1160 MREAGK 1165
Score = 97.8 bits (242), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 94/173 (54%), Gaps = 22/173 (12%)
Query: 197 DDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDR 256
+DS+ TD+ F+MF+ D E T+ LFGKV K + S V V + R
Sbjct: 339 EDSIVDGTDNS----FKMFWADFTE----LDSTLLLFGKVKTK-HGKFISAMVQVAGLHR 389
Query: 257 KIYLLPRSEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPDLSE 315
++Y LPR E + +V+ E + +Y + + +++ KKYAF LPG+P +E
Sbjct: 390 ELYFLPR-------EGKTTMEVHEEIIPLLLDKYGLDNIRAKPTIKKYAFELPGIPKEAE 442
Query: 316 YLEVRYSAKCP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWL 363
YL+V P +P+DLSGDTF HVFG T+ E+ +L++KI GPSWL
Sbjct: 443 YLKVLLPYNTPKCKNMTIPADLSGDTFYHVFGGGTNIFESFVLQQKIMGPSWL 495
>gi|320163763|gb|EFW40662.1| DNA polymerase alpha subunit I [Capsaspora owczarzaki ATCC 30864]
Length = 1656
Score = 302 bits (774), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 196/460 (42%), Positives = 266/460 (57%), Gaps = 79/460 (17%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS-------YVLPD 469
+++ ++ V+PL Q+TN+ GN+ SRTL+GGR+ERNEF LLH F + ++ PD
Sbjct: 900 VRLAAKMMVIPLTRQLTNIAGNLWSRTLLGGRAERNEFYLLHEFSRPTVWEANRKFIPPD 959
Query: 470 KQYGKNKKEGEET------GEANKGKG--------------------------------- 490
K Y ++ G+ N+GK
Sbjct: 960 KIYASQVRKAAAAAAAAAAGKGNRGKAAAAAADEGMDEDDQGPSDPASTAAGGGAAAGAF 1019
Query: 491 --RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVR---ML 541
RKKAAY+GGLVLEPKKGFYD++I+L+DFNSLYPSII EYNICFTT+ PV L
Sbjct: 1020 KKRKKAAYAGGLVLEPKKGFYDRYILLLDFNSLYPSIIMEYNICFTTVDKPQPVSDPTGL 1079
Query: 542 QDSD-----ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 596
+D + IT E LP G+LP + +LV+ R K M + Q+DI
Sbjct: 1080 EDGNGQPLMITPPAE-LPAKTRKDGLLPRVLSRLVQQRALAKKEMAN---HPEQKQQWDI 1135
Query: 597 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV-ENLNYEVIYGDT 655
RQ+ALKLTANSMYGCLGF NSRF+A+ LA L+T +GR+IL +T LV + LN EVIYGDT
Sbjct: 1136 RQRALKLTANSMYGCLGFTNSRFYAKHLAELITGRGRDILQSTVDLVQQQLNLEVIYGDT 1195
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS-- 713
DS+MI+ V ++G ++K + N YKQL +++DG++K MLLLKKKKYAALS+
Sbjct: 1196 DSIMINTQSIHLPDVLEVGQRVKKQVNDRYKQLVIEMDGIFKSMLLLKKKKYAALSVHLK 1255
Query: 714 ----KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--------DEQSYTDYS 761
++ NG S+E KG+D+VRRDW LA +AG FV++QIL D+ + S
Sbjct: 1256 DGAVEMVNGAPRVSRETKGLDIVRRDWCDLAHDAGNFVLNQILSDNNAASIDDAAEGVLS 1315
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++ I ++ ++ D+ G L I K LTK PE
Sbjct: 1316 KDALVERIRTYLLQLAADVRTGKTLLNKFVINKGLTKNPE 1355
Score = 163 bits (412), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 142/254 (55%), Gaps = 19/254 (7%)
Query: 190 IQNPNAKDDS--LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSC 247
+Q P S LPL TD + + ++LDA+ED+ PG +YL GKV+ + + H SC
Sbjct: 460 LQLPTVSSSSSALPLKTDEAGVQYVQFYWLDAYEDMTISPGLIYLIGKVWSETDKRHVSC 519
Query: 248 CVIVQNIDRKIYLLPRSEH------LKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEK 301
CV+V N +R I++LPR EH + T + V+I V E D + +Y+I +++S+ +++
Sbjct: 520 CVVVHNNERNIFILPR-EHALDANGISTAKEVTIEDVEDELDNVRAKYRIEEWRSKPVQR 578
Query: 302 KYAFNLPGVPDLSEYLEVRYS-AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGP 360
YAF LPGVP + Y++V+YS A +D SG T+SH+FGT TS LE L++R + GP
Sbjct: 579 LYAFGLPGVPAYATYIKVKYSAALPALAAADQSGKTYSHIFGTTTSCLERFLVKRALMGP 638
Query: 361 SWLEFPEAEKFPSRISWCKYEVQCN---QMEKIRSKQGLIYLIGIVEFIKFTMLHSS--- 414
WL+ P + +WC E C+ + KI ++ L + + T+L++S
Sbjct: 639 CWLKVPCRPNNGAPETWCALEAICDNPKSISKIAARDLLPPPLVVCSLAMKTILNASKHK 698
Query: 415 ---YIIKIMCELNV 425
++ ++ NV
Sbjct: 699 HEVAVVSLVLHTNV 712
>gi|366995475|ref|XP_003677501.1| hypothetical protein NCAS_0G02620 [Naumovozyma castellii CBS 4309]
gi|342303370|emb|CCC71149.1| hypothetical protein NCAS_0G02620 [Naumovozyma castellii CBS 4309]
Length = 1454
Score = 302 bits (774), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 178/410 (43%), Positives = 255/410 (62%), Gaps = 25/410 (6%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK------NK 476
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F Y++PDK+ K K
Sbjct: 752 IQMLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFKRNGYIVPDKETNKMRSQRQQK 811
Query: 477 KEGEE-TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K E+ GE N G KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT
Sbjct: 812 KADEQGDGEVNTGAASKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTT 871
Query: 536 IPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQ 593
+ +D + +P ++ G+LP + LV+ RR+VK +M SD +Q
Sbjct: 872 VE----RDPENIEELPEVPSTDIEQGVLPRLLANLVQRRREVKKIMAT---ESDPHKRVQ 924
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG 653
DIRQ+ALKLTANSMYGCLG+ SRF+A+PLA LVT KGREIL+NT+ L EN+N V+YG
Sbjct: 925 CDIRQQALKLTANSMYGCLGYVYSRFYAKPLAMLVTNKGREILMNTRQLAENMNLLVVYG 984
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
DTDS+MI ++Y KIGN K N YK LE+DID V+K +LL KKKYAAL++S
Sbjct: 985 DTDSVMIDTGCDNYADAIKIGNNFKKLVNDRYKLLEIDIDNVFKKLLLHAKKKYAALNVS 1044
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
GK E+KG+D+ RR++ L+ + V++ IL +D + LQ +++++
Sbjct: 1045 IDKEGKERTVLEVKGLDMKRREFCPLSKDVSTHVLTTIL-----SDKDPETALQEVYDYL 1099
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ ++ ++N + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 1100 ENVKNKMENNEIRADKYKINMKLSKDPKAYPGGKNMPAVQVALKMRKAGR 1149
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 22/196 (11%)
Query: 204 TDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR 263
+ EN K F+MF++D E ++ LFGK+ + N S I + R++Y LP
Sbjct: 329 VNPENGK-FQMFWMDFCE----VNNSLILFGKIRTNDGNLISGMLQI-NGLCRELYFLPN 382
Query: 264 SEHLKTKEPVSIAQVYSEFDQIATQ-YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
++ KT E +++ E + + Y + D +++ + KYAF LPG+P S YL+V
Sbjct: 383 TD--KTPE-----EIHEEIIPLLLEKYGLHDIRAKPEKMKYAFELPGIPHESTYLKVLLP 435
Query: 323 AKCP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RI 375
+ P +P DLS +TF+HVFG T+ E ++ KI GP WLE + F S
Sbjct: 436 FQTPKSSNDLIPPDLSSETFNHVFGGNTNIFEAFAIQNKIMGPCWLEISNGD-FNSLQNS 494
Query: 376 SWCKYEVQCNQMEKIR 391
S C EV ++ + I+
Sbjct: 495 SNCAVEVSVHKPQDIQ 510
>gi|254578760|ref|XP_002495366.1| ZYRO0B09592p [Zygosaccharomyces rouxii]
gi|238938256|emb|CAR26433.1| ZYRO0B09592p [Zygosaccharomyces rouxii]
Length = 1456
Score = 301 bits (772), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 181/424 (42%), Positives = 266/424 (62%), Gaps = 29/424 (6%)
Query: 412 HSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ 471
+S I +I + +L L Q+TN+ GN S+TL G R+ RNE++LLH F Y+LPDK+
Sbjct: 735 NSMIIAEISFRIQLLSLTKQLTNLAGNAWSQTLGGTRAGRNEYILLHEFSRNGYILPDKE 794
Query: 472 YGKNK--KEGEETG--EANKGKG-----RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
+N+ K + TG + + G G KKA Y GGLV EP+KG + ++++MDFNSLY
Sbjct: 795 NSRNRTSKRPDTTGAPDGDSGNGDPVVSSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLY 854
Query: 523 PSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM- 581
PSIIQE+NICFTT+ R L+D+D L E +P + G+LP + LV+ RR+VK +M
Sbjct: 855 PSIIQEFNICFTTVD-RNLEDTD--ELPE-VPSNDGGKGVLPRLLANLVQRRREVKKIMA 910
Query: 582 --KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
+ P+ + Q DI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT
Sbjct: 911 TERDPHKRT----QCDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNT 966
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
+ L E+L V+YGDTDS+MI ++Y K+GN+ K N+ YK LE+DID V+K +
Sbjct: 967 RQLAESLELTVVYGDTDSVMIDSKCDNYADAIKVGNEFKKLVNERYKLLEIDIDNVFKKL 1026
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAAL++S G E+KG+D+ RR++ L+ + V++ +L E
Sbjct: 1027 LLHAKKKYAALTVSLDKEGNERTILEVKGLDMKRREFCPLSRDVSIHVLNTVLSEDDS-- 1084
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK----APEGGKVCITQIRLSRN 815
+ L +I+E+++++R ++N + + +I +L+K P G + Q+ L
Sbjct: 1085 ---EKALSDIYEYLERVRVQMENNEIRVDKYKINTKLSKDPNSYPNGKSMPAVQVALRMR 1141
Query: 816 RRGR 819
+ GR
Sbjct: 1142 KVGR 1145
Score = 90.5 bits (223), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 88/160 (55%), Gaps = 18/160 (11%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
F+MF+LD E T+ LFGK+ ++ S S V + I R++Y+LPR + KT +
Sbjct: 330 FQMFWLDFCE----VDNTLVLFGKIKARDG-SLVSGMVQINGICRELYILPRED--KTPQ 382
Query: 272 PVSIAQVYSEFDQIAT-QYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
V+ E + +Y + + +++ + KYAF LP +P ++YL+V P
Sbjct: 383 -----DVHDEIIPLLMGKYGLDNIRAKSEKMKYAFELPDIPREADYLKVLMPINTPKCKY 437
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF 365
+P DLS DTF HVFG K+S E+ +++ KI GP WLE
Sbjct: 438 ETIPPDLSSDTFYHVFGGKSSAFESFVVQNKIMGPCWLEI 477
Score = 41.6 bits (96), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 18/114 (15%)
Query: 126 DENVYEEVSEKEYTERVLKRQE---DDWIDDDGGDGYVEDGREIF------DDDIEDVPQ 176
D+ +Y+E+ EKEY R +K +E DD+++DD G GYV+ G E D+DIE+
Sbjct: 28 DDRLYDEIDEKEY--RHMKYKELLQDDFVEDDDGFGYVDRGVEDVEEDHYSDEDIENDNV 85
Query: 177 KKEKHDKRKKNKNIQNPNAKD-----DSLPL--ATDHENKKVFRMFFLDAFEDI 223
K K K K+ N N D L L A+ NK + +D F+DI
Sbjct: 86 NNRKKSKETKAKSANNNNGSSERNIGDMLRLQRASVQLNKPTKKAKDIDEFDDI 139
>gi|295662386|ref|XP_002791747.1| DNA polymerase alpha catalytic subunit [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279873|gb|EEH35439.1| DNA polymerase alpha catalytic subunit [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 1458
Score = 301 bits (772), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 255/402 (63%), Gaps = 8/402 (1%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ +I + +I ++ +L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 744 GLMNYISHCEADTYFIAALVLKLQMLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 803
Query: 461 HEKSYVLPDKQYGKNKKEGEETGE-ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
+ Y+ PDK K ++ + E + +KK Y GGLV EP++G YDK+I++MDFN
Sbjct: 804 YRNKYICPDKYASKYQQMSQANEEDEDGTGKKKKDKYKGGLVFEPERGLYDKYILVMDFN 863
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SLYPSIIQE+NICFTT+ ++ +++ +P Q GILP I LV RR+VK
Sbjct: 864 SLYPSIIQEFNICFTTVDRALVAENENEEKVPEVPTEQA-PGILPRLIATLVNRRREVKK 922
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
LMK S + L +D +Q ALKLTANSMYGCLG+ SRF+A+ LA L T+KGREIL +T
Sbjct: 923 LMKDKRASPEDLALWDTKQMALKLTANSMYGCLGYTQSRFYARSLAMLTTSKGREILRST 982
Query: 640 KSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM 699
K L E+ +VIYGDTDS+MI+ N ++ + K+GN K N+ YK LE+DID V++ +
Sbjct: 983 KELAESNQLQVIYGDTDSVMINTNADNIEEALKVGNTFKRLVNERYKLLEIDIDNVFRRL 1042
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E ++++IL
Sbjct: 1043 LLHAKKKYAAINMTEV-DGKYVDQLEVKGLDMKRREYCALSKEVSSKLLNEILSGD---- 1097
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L +H++++++ + +P+ I +L+K P+
Sbjct: 1098 -DPDVVLTKVHDYLRELTEKMKELAIPVQKYVIYTKLSKGPD 1138
Score = 123 bits (309), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 116/217 (53%), Gaps = 17/217 (7%)
Query: 181 HDKRKKNKNIQNPNAKDD------SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFG 234
+D K + +P A D + P A + + +F F+LD E G + LFG
Sbjct: 309 NDVTSKLNVLSSPAASDFKTFGKLAAPDAVEEDGSLLF--FWLDYVE----INGNLCLFG 362
Query: 235 KVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFDQIATQYK 290
KV K++ S+ S V V NI RK+Y LPR ++ T+E + + VY E ++ + K
Sbjct: 363 KVKNKKSGSYVSAFVKVDNILRKLYFLPRQYRVRHGRETEEEIDMEDVYKEVAELMSAAK 422
Query: 291 ILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLEN 350
+ K ++ +KYAF LP +P + YL++ YS +LP D+ G+TFSHVFGT T+ E
Sbjct: 423 VTKHKIKESVRKYAFELPDIPKEATYLKLMYSYDSSSLPVDVKGETFSHVFGTNTALFEQ 482
Query: 351 LLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
+L + I GP WL+ A+ + SWCK E Q +Q
Sbjct: 483 FVLWKNIMGPCWLKLENADFTAVNGASWCKLECQVSQ 519
Score = 50.8 bits (120), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 18/104 (17%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE D ++Y+EV E+ Y + V KR +DD++ DD G+GY
Sbjct: 6 AKLAELRALRASGKKRLTTYEIEDDGDIYDEVDEEGYKKLVRKRLDQDDFVIDDAGEGYA 65
Query: 161 EDGREIFDD--------DIEDVP-------QKKEKHDKRKKNKN 189
+DGRE ++D D +++P +K+E+ D+RK+ N
Sbjct: 66 DDGREEWNDSRRYYSDSDGDELPLKGKAAKRKREEDDQRKEKIN 109
>gi|27413232|gb|AAG52947.1| type I DNA polymerase alpha [Urostyla grandis]
Length = 1356
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 190/424 (44%), Positives = 265/424 (62%), Gaps = 34/424 (8%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ + I+ T S +M L+V+PL Q+T++ GN+ R+L R+ERNE LLLH F+
Sbjct: 723 LFKLIEHTERDSYLTFSLMQHLSVVPLTKQLTSIAGNLWYRSLQNARAERNEMLLLHEFY 782
Query: 462 EKSYVLPDKQ-YGKNKKEGEETGEAN---------KGKGRKKAAYSGGLVLEPKKGFYDK 511
K Y+ PDK + K+KK+ E+ N K RKKA YSGGLV+EPK GFYD
Sbjct: 783 GKKYLCPDKAPFSKDKKQFEDYENENLFGNEEVKGNNKKRKKAQYSGGLVIEPKAGFYDT 842
Query: 512 FIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEYLPEHQVDT-------- 560
I+L+DFNSLYPSIIQEYN+CFTT+ P + +SDI + + + +V+
Sbjct: 843 IILLLDFNSLYPSIIQEYNLCFTTVNRRPSKNYDNSDIKSKQDENIDDEVELPDKGNTYK 902
Query: 561 -GILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNS 617
ILP+ +K LV+ R+ VK +K+ +D + Q +IRQKA+KLTANSMYGCLGF +S
Sbjct: 903 DAILPNVLKNLVQKRKIVKEQLKK---ETDPVKQQQLEIRQKAIKLTANSMYGCLGFSSS 959
Query: 618 RFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
RF A+ +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ + + K+G++
Sbjct: 960 RFHAKAIAALITKTGRETLLKTKDIAENKLGFNVVYGDTDSIMINSGTTNIEEALKMGHR 1019
Query: 677 IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK-LSNGKMICSQEIKGVDVVRRD 735
+K E N+ YK LE++IDG++K +LLLKKKKYAAL + +S + +E KG+D+VRRD
Sbjct: 1020 LKQEVNQHYKCLEIEIDGLFKSLLLLKKKKYAALKVENFMSPDRKTIIKECKGLDMVRRD 1079
Query: 736 WSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQ 795
W LA AG FV+ QIL Q D L + EH+ + + N +PL I KQ
Sbjct: 1080 WCALAKNAGDFVLDQILSGQQREDIVL-----TLTEHLSNLGQRMKNNQIPLKEYVINKQ 1134
Query: 796 LTKA 799
+T+A
Sbjct: 1135 ITRA 1138
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 198 DSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 257
DS PL + + + F F+ DA E+ V+LFGKV+ E + SC + V + R
Sbjct: 306 DSYPLPVNKDKELAF--FWFDAHEE--NMGLDVFLFGKVYQPELKQYVSCSLKVNGMQRI 361
Query: 258 IYLLP-------RSEHLKTKEPVSIAQVYSEFDQIATQ--YKILDFKSRKIEKKYAFNLP 308
+Y LP R+E K +E +++SE D I I +K + ++KYAF +P
Sbjct: 362 VYALPKVSKNKSRAELTKEEEQEMALKIFSELDGIRKNKFPSISQWKCKVAKRKYAFEMP 421
Query: 309 GVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
+ L+++Y + P LP++L+G TF +F T+ S LE LLL++KIKGP W+
Sbjct: 422 IHHGEHQLLKIKYDSTMPPLPANLTGSTFECLFNTQQSMLELLLLKQKIKGPCWITLKNV 481
Query: 369 EKF---PSRISWCKYEV 382
++ ++ SWCK+++
Sbjct: 482 QQITQASNKRSWCKHDL 498
Score = 39.7 bits (91), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 122 EFTADEN--VYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFD 168
++ DE+ ++EE+ +EY +R+ DD+I DD G GY E G EI+D
Sbjct: 39 QYKGDEHKKIFEEIDAEEYDALYDQRENDDFIVDDDGIGYKEKGGEIWD 87
>gi|29251556|gb|AAO73537.1| DNA polymerase catalytic subunit alpha [Stylonychia lemnae]
Length = 1524
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 190/430 (44%), Positives = 260/430 (60%), Gaps = 40/430 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I + I+ + S Y +M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 772 IFQLIEHSEKDSYYTFMLMPHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 831
Query: 462 EKSYVLPDKQ-----------YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+K ++LPDK+ G +E + G KG RKKA Y+GGLV+EPK GFYD
Sbjct: 832 KKKFILPDKKPPNAKDLRRGFMGDEYEENDTKGGGKKGGKRKKAKYAGGLVIEPKAGFYD 891
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEY----------------LP 554
I+L+DFNSLYPSIIQEYN+CFTT+ R ++ D + L LP
Sbjct: 892 NIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQXKSADNAEGDEVEDVDLP 951
Query: 555 EHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 612
+ V+ +LP ++ LV+ R+ VK MK L Q +IRQKA+KLTANSMYGCL
Sbjct: 952 DKNVNIKDAVLPXVLRDLVQKRKAVKEKMKN-EXDQXKLQQLEIRQKAIKLTANSMYGCL 1010
Query: 613 GFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVF 671
GF +SRF A +AAL+T GRE LL TK + EN L + V+YG TDS+MI+ N
Sbjct: 1011 GFSSSRFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYGXTDSIMINTGTNQLQQSL 1070
Query: 672 KIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDV 731
++G ++K E N LYK LE++IDG +K +LLLKKKKYA L + + ++ QE+KG+D+
Sbjct: 1071 EMGKKLKVEVNCLYKCLEIEIDGXFKSLLLLKKKKYAXLRYEGVGSNEVKVIQEMKGLDM 1130
Query: 732 VRRDWSQLASEAGKFVISQILDEQSYTD--YSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
VRR W L+ G +V+SQIL + D ++L++ L +I E MK R LD F+
Sbjct: 1131 VRRXWCPLSKSIGNYVLSQILSGKQXEDVVFNLNEYLSDIGEKMKSNRITLDQ-FI---- 1185
Query: 790 LEITKQLTKA 799
ITKQLT+A
Sbjct: 1186 --ITKQLTRA 1193
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 110/220 (50%), Gaps = 16/220 (7%)
Query: 176 QKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGK 235
Q ++ H + K + + ++ +LPL D +++DA + +++FGK
Sbjct: 332 QNQQAHQEFKTMEQKSAMDIQEFALPLNQDGS----LSFYWIDAHGE--NNGADLFIFGK 385
Query: 236 VFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS-------IAQVYSEFDQIATQ 288
++ E N + SC + V + R+IY LP+ + K + ++ + V E + I +
Sbjct: 386 IYQPEINQYVSCSMKVNGMQREIYALPKMQKGKARGTLTREEENQLVRGVQLELEDIRKK 445
Query: 289 --YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTS 346
I ++ + + +KYAF + +L+++Y A LPS + G+TF +FG+ S
Sbjct: 446 RFQGITKWRCKPVTRKYAFEMLIQHGEHLFLKIKYDATFIPLPSTVQGNTFECLFGSNQS 505
Query: 347 FLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCN 385
LE +L+RKIKGP W+ +K + +WC+ E++ +
Sbjct: 506 MLELFILKRKIKGPCWMTIKNPKKVTDFKKTWCRQEIEID 545
Score = 39.7 bits (91), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 120 KYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFD-DDIEDVPQKK 178
+Y+ + ++EE+ EY +R+ DD+I D G GY + G EI++ DD E+V KK
Sbjct: 42 QYQVEEAKRIFEEIDADEYERIXDQRKNDDFIVXDDGXGYRDHGGEIWERDDNEEVGGKK 101
Query: 179 EKHDKRKKNKNIQNPNAKDDSLPLATDHENK 209
+ KRK + N Q + B +P +T +NK
Sbjct: 102 K---KRKLDPNEQ--HITBFMMPASTIRKNK 127
>gi|27413230|gb|AAG52946.1| type II DNA polymerase alpha [Urostyla grandis]
Length = 1356
Score = 301 bits (772), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 190/424 (44%), Positives = 265/424 (62%), Gaps = 34/424 (8%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ + I+ T S +M L+V+PL Q+T++ GN+ R+L R+ERNE LLLH F+
Sbjct: 723 LFKLIEHTERDSYLTFSLMQHLSVVPLTKQLTSIAGNLWYRSLQNARAERNEMLLLHEFY 782
Query: 462 EKSYVLPDKQ-YGKNKKEGEETGEAN---------KGKGRKKAAYSGGLVLEPKKGFYDK 511
K Y+ PDK + K+KK+ E+ N K RKKA YSGGLV+EPK GFYD
Sbjct: 783 GKKYLCPDKAPFSKDKKQFEDYENENLFGNEEVKGNNKKRKKAQYSGGLVIEPKAGFYDT 842
Query: 512 FIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEYLPEHQVDT-------- 560
I+L+DFNSLYPSIIQEYN+CFTT+ P + +SDI + + + +V+
Sbjct: 843 IILLLDFNSLYPSIIQEYNLCFTTVNRRPSKNYDNSDIKSKQDENIDDEVELPDKGNTYK 902
Query: 561 -GILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNS 617
ILP+ +K LV+ R+ VK +K+ +D + Q +IRQKA+KLTANSMYGCLGF +S
Sbjct: 903 DAILPNVLKNLVQKRKIVKEQLKK---ETDPVKQQQLEIRQKAIKLTANSMYGCLGFSSS 959
Query: 618 RFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
RF A+ +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ + + K+G++
Sbjct: 960 RFHAKAIAALITKTGRETLLKTKDIAENKLGFNVVYGDTDSIMINSGTTNIEEALKMGHR 1019
Query: 677 IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK-LSNGKMICSQEIKGVDVVRRD 735
+K E N+ YK LE++IDG++K +LLLKKKKYAAL + +S + +E KG+D+VRRD
Sbjct: 1020 LKQEVNQHYKCLEIEIDGLFKSLLLLKKKKYAALKVENFMSPDRKTIIKECKGLDMVRRD 1079
Query: 736 WSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQ 795
W LA AG FV+ QIL Q D L + EH+ + + N +PL I KQ
Sbjct: 1080 WCALAKNAGDFVLDQILSGQQREDIVL-----TLTEHLSNLGQRMKNNQIPLKEYVINKQ 1134
Query: 796 LTKA 799
+T+A
Sbjct: 1135 ITRA 1138
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 106/197 (53%), Gaps = 16/197 (8%)
Query: 198 DSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 257
DS PL + + + F F+ DA E+ V+LFGKV+ E + SC + V + R
Sbjct: 306 DSYPLPVNKDKELAF--FWFDAHEE--NMGLDVFLFGKVYQPELKQYVSCSLKVNGMQRI 361
Query: 258 IYLLP-------RSEHLKTKEPVSIAQVYSEFDQIATQ--YKILDFKSRKIEKKYAFNLP 308
+Y LP R+E K +E +++SE D I I +K + ++KYAF +P
Sbjct: 362 VYALPKVSKNKSRAELTKEEEQEMALKIFSELDGIRKNKFPSISQWKCKVAKRKYAFEMP 421
Query: 309 GVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
+ L+++Y + P LP++L+G TF +F T+ S LE LLL++KIKGP W+
Sbjct: 422 IHHGEHQLLKIKYDSTMPPLPANLTGSTFECLFNTQQSMLELLLLKQKIKGPCWITLKNV 481
Query: 369 EKF---PSRISWCKYEV 382
++ ++ SWCK+++
Sbjct: 482 QQITQASNKRSWCKHDL 498
Score = 39.7 bits (91), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 122 EFTADEN--VYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFD 168
++ DE+ ++EE+ +EY +R+ DD+I DD G GY E G EI+D
Sbjct: 39 QYKGDEHKKIFEEIDAEEYDALYDQRENDDFIVDDDGIGYKEKGGEIWD 87
>gi|325183116|emb|CCA17574.1| DNA polymerase alpha catalytic subunit putative [Albugo laibachii
Nc14]
Length = 1561
Score = 301 bits (770), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 177/479 (36%), Positives = 278/479 (58%), Gaps = 55/479 (11%)
Query: 379 KYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGN 438
+++++ N++ +I + + + T+ + +I+++M +L +LPL+ Q+ N+CG
Sbjct: 784 RFDIEMNEIPQIMCSSPQYF----TKLLCHTLDDAMFILQLMHQLQILPLSKQLANLCGY 839
Query: 439 VLSRTLMGG-RSERNEFLLLHAFHEKS--YVLPDKQYGKNKKEGEETGEANKGKGRKKAA 495
+ RTL R+ER EFLL H F + ++LP+K K+ +G GK R+KA+
Sbjct: 840 LWPRTLEANKRAERIEFLLSHEFSKSKHKFILPEK-----VKQSRGSG----GKQREKAS 890
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------------------- 536
Y GG+V PKKG YD F++L+DFNSLYPSII+EYNICFTT+
Sbjct: 891 YMGGMVFSPKKGLYDNFVVLLDFNSLYPSIIREYNICFTTVDRKLEENTTSTGKRGQKRM 950
Query: 537 ----PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS--DL 590
V+ ++ D LP G+LP IK+L++SR+QVK + + + D
Sbjct: 951 EGSTDVKSEENIDAEEDIPALPPASCGDGVLPGVIKRLLDSRKQVKQALVSASRAGQKDK 1010
Query: 591 LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-NLNYE 649
DIRQKA+KLTANSMYGCLGF SR++A+ +AAL+T+ GR+ L K + E Y+
Sbjct: 1011 AQSLDIRQKAIKLTANSMYGCLGFRYSRYYAKAIAALITSTGRQTLQRAKEVAELECGYD 1070
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAA 709
VIYGDTDS+M+ + +IG +I+++CNK ++ LEL++D ++K +LLL KKKYAA
Sbjct: 1071 VIYGDTDSIMVDSRSDQLLDAKRIGREIQTQCNKHFELLELEVDSIFKTILLLNKKKYAA 1130
Query: 710 LSI---SKLSNGKMI-CSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
L + + SN +I +E+KG+D+VRRDW ++ G ++ QIL ++ D+
Sbjct: 1131 LVVKETTDTSNSIIIRYEKEVKGLDLVRRDWCVISKVVGNDILDQILSGKAR-----DEV 1185
Query: 766 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLSRNRRGRR 820
+ NIH +++ + T + + P+ ITK L K PE G K Q+ L+ ++G+
Sbjct: 1186 VDNIHMYLETVATRIRSELDPIDQFVITKSLNKQPEQYPDGAKQYHVQVALALKQQGQH 1244
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 108/209 (51%), Gaps = 27/209 (12%)
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNS--HSSCCVIVQNIDRKIYLLPRSEHLKTK 270
R+F++DA E I +PG +YL GKV V ++ + SCC+ V N++R +YL+P++E ++
Sbjct: 365 RIFWMDAIE-IRDRPGKLYLIGKVKVVSGSTITYQSCCITVNNLERCMYLVPKTEAVQAL 423
Query: 271 EPVSIAQ----------VYSEFDQIATQYKILD----------FKSRKIEKKYAFNLPGV 310
+P + ++ + Q Y I + FK++ +E++YAF +
Sbjct: 424 DPKATTMNDLTPELQQALWMKMHQDIHHYLIPNCITGRKDKENFKTKLVEREYAFEREDI 483
Query: 311 P-DLSEYLEVRYSAKCPALPSDLS---GDTFSHVFGTKTSFLENLLLERKIKGPSWLEFP 366
P ++Y++VRYSA+ P P D+ G FS + G T LE LL RK+ GP W+E
Sbjct: 484 PRGKNKYVKVRYSARYPITPPDICERGGRYFSRICGASTRPLEIFLLGRKLLGPGWIEVC 543
Query: 367 EAEKFPSRISWCKYEVQCNQMEKIRSKQG 395
++ S+C+ E + + I G
Sbjct: 544 NVHASQNKESFCQLEYATDNPKGIHVLHG 572
>gi|440796401|gb|ELR17510.1| DNA polymerase (pol2), putative [Acanthamoeba castellanii str. Neff]
Length = 1352
Score = 300 bits (769), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 176/406 (43%), Positives = 239/406 (58%), Gaps = 63/406 (15%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS---YVLPDKQYG 473
I +M ++ VLPL +TNVCGN+ SR+LMG R+ER E+LLLH FH++ ++ PD+
Sbjct: 650 ISLMFKIEVLPLTKHLTNVCGNLWSRSLMGARAERIEYLLLHRFHDQPKPHFICPDR--- 706
Query: 474 KNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICF 533
+E G+ NKGK +K AY GGLVL+PKKGFYD +I+L+DFNSLYPSIIQEYNICF
Sbjct: 707 ----ASQEDGKFNKGK--RKPAYEGGLVLDPKKGFYDTYILLLDFNSLYPSIIQEYNICF 760
Query: 534 TTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ 593
TTI D ++ + +LV R VK +K S+ Q
Sbjct: 761 TTI------DREV--------------------VYELVNRRGAVKKQLKAERDGSERFQQ 794
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIY 652
+++Q ALKL ANSMYGCLGF +SRFFA LA L+T KGRE L TK E LN +VIY
Sbjct: 795 LNVKQLALKLVANSMYGCLGFSHSRFFAMALAELITLKGREALKTTKEQAEGQLNLDVIY 854
Query: 653 GDTDSLMI-----SCNVNDYDSVF-----------KIGNQIKSECNKLYKQLELDIDGVY 696
GDTDS+M+ S D D K+GN +K N+ Y +E+DIDG++
Sbjct: 855 GDTDSIMVNTRIPSVPAPDADPALRDSASVLSQVRKMGNDLKKVINQRYSHVEIDIDGIF 914
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
K +LLL KKKYAAL+I N +E+KG+D+VRRDW L+ E G+ V+ +I+ +
Sbjct: 915 KMILLLAKKKYAALTIGNDIND---VKKEMKGLDLVRRDWCDLSKEMGQRVLDEIMSGKP 971
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
D + IH ++ + + + +G + L ITK L+K P+
Sbjct: 972 RQDV-----VSGIHSYLTHMGSQIKSGRISLEKFVITKCLSKDPDA 1012
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 116/210 (55%), Gaps = 19/210 (9%)
Query: 195 AKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFV-KENNSHSSCCVIVQN 253
A D LPL D ++LDA E+ PG V++FGKV V K N +SCC+ +N
Sbjct: 199 AMDTDLPLEKDGS----LLFYWLDAAEEKQVNPGVVFMFGKVCVNKTTNQFASCCITARN 254
Query: 254 IDRKIYLLPRSEHL-----KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLP 308
+ R ++++PR + L +T PV++ V +E + +Y + + + + +KY F+
Sbjct: 255 VPRSLFVVPRQKMLDDQRQETDTPVTMQDVRAEIGSLRKEYNMGQLRMKSVRRKYPFDKE 314
Query: 309 GVP-DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
GVP S++L+V S+ LP++LSG +FSH+FG TS E+LL++R + GP WL+
Sbjct: 315 GVPRGESDFLKVICSSSV-HLPANLSGQSFSHIFGATTSATESLLIKRHLMGPGWLKITN 373
Query: 368 AEKFPSR-------ISWCKYEVQCNQMEKI 390
+ ++ I+WCK+E + + I
Sbjct: 374 VAEDNAKLRRGVQQITWCKFEGHVDNITDI 403
>gi|340055506|emb|CCC49825.1| DNA polymerase alpha catalytic subunit, fragment, partial
[Trypanosoma vivax Y486]
Length = 916
Score = 300 bits (768), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 185/398 (46%), Positives = 251/398 (63%), Gaps = 35/398 (8%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
L+V+PL ++T++ GN+ SRTL G RSER E+LLLHAFH +V PD+ KK +
Sbjct: 237 LDVIPLTKRLTSLAGNLWSRTLYGARSERIEYLLLHAFHNLKFVTPDR-----KKLDAKR 291
Query: 483 GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------ 536
G ++ + ++K + GG+VLEPK G Y ++I+L+DFNSLYPS+IQE+NIC+TTI
Sbjct: 292 GRHDEDETKRKTKFQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQEFNICYTTIERDEST 351
Query: 537 ------PVRMLQDSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
P +S I C LP ILP I+ LV+SRR++K LMK +
Sbjct: 352 VAAEVPP----PESLICRACAATGLPSPCSHKCILPKVIRGLVDSRREIKRLMKTEKDPA 407
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN- 647
+L + +IRQKALKLTANSMYGCLGF +SRF+AQPLA LVT +GR L NT L+ ++
Sbjct: 408 NLAL-LEIRQKALKLTANSMYGCLGFEHSRFYAQPLAELVTRQGRLALQNTVELIPQVSP 466
Query: 648 -YEVIYGDTDSLMISCNVND-YDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
VIYGDTDS+MI + D V +G +IK + N+ Y+ LELDIDGV++ MLLLKKK
Sbjct: 467 SIRVIYGDTDSVMIQTGIKDSIGKVRDLGFEIKGKVNQKYQSLELDIDGVFRAMLLLKKK 526
Query: 706 KYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
KYAALS+ GKM +E+KG+D+VRRDW L+ V++++L+ + +D
Sbjct: 527 KYAALSVVDWQGEGKMY-QKEVKGLDMVRRDWCPLSQRISDAVLNRVLNAEGG-----ED 580
Query: 765 RLQNIHEHMKKIRTDLDNGFV-PLTLLEITKQLTKAPE 801
L I +MK D+ +G V PL I+K LTK PE
Sbjct: 581 VLDFIMRYMKDRAEDVRSGKVYPLEDFVISKSLTKEPE 618
>gi|403217489|emb|CCK71983.1| hypothetical protein KNAG_0I01980 [Kazachstania naganishii CBS 8797]
Length = 1464
Score = 300 bits (767), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 253/412 (61%), Gaps = 26/412 (6%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE---- 478
+ +L L Q+TN+ GN S+TL G R+ RNE++LLH F + Y++PDK+ K + +
Sbjct: 757 IQLLSLTKQLTNLAGNAWSQTLGGTRAGRNEYILLHEFSKNGYIVPDKETQKMRNQRQMQ 816
Query: 479 ------GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNIC 532
G+E E KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NIC
Sbjct: 817 MQRNEKGDEDTETTALGSSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNIC 876
Query: 533 FTTIPVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL 591
FTT+ R LQD D + T+ P + G+LP + LVE RR+VK +MK
Sbjct: 877 FTTVD-RNLQDIDELPTV----PSDDKNQGVLPRLLANLVERRREVKKVMKTEK-DPHKY 930
Query: 592 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVI 651
+Q DIRQ+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGRE+L+NT+ L E + V+
Sbjct: 931 VQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREVLMNTRQLAETMGLVVV 990
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALS 711
YGDTDS+MI Y KIG K N+ YK LE+DID V+K +LL KKKYAAL+
Sbjct: 991 YGDTDSVMIDTGCESYADAIKIGENFKKLVNERYKLLEIDIDNVFKKLLLHAKKKYAALN 1050
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
++ G E+KG+D+ RR++S L+ + V+S +L +D + LQ ++E
Sbjct: 1051 VTINKAGVEHVKLEVKGLDMRRREFSPLSKDVSTHVLSTVL-----SDKDPETALQEVYE 1105
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAP---EGGKVC-ITQIRLSRNRRGR 819
+++ I+T ++N + + +I +++K P GGK Q+ L + G+
Sbjct: 1106 YLEDIKTKMENNEIRIDKYKINTKISKDPTAYPGGKTMPAVQVALKMRKAGK 1157
Score = 84.3 bits (207), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 88/178 (49%), Gaps = 19/178 (10%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
F MF+LD F ++ ++ L+GK + + S V + + R++Y LPR
Sbjct: 341 FEMFWLD-FAEVN---NSLVLYGKAKALDG-TMVSAMVQINGLCRELYFLPRDGK----- 390
Query: 272 PVSIAQVYSE-FDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
S A + E + +Y + + +++ KKYAF LP +P EYL+V + P
Sbjct: 391 --SAADIEEEILPLLMDKYGLNNIRAKPESKKYAFELPDIPHEKEYLKVLLPYETPKCSH 448
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEV 382
LP DLS D FSHVFG + +E+ +++ + GP WLE A+ K S C EV
Sbjct: 449 DLLPPDLSSDNFSHVFGGNANIVESFVVQNNVMGPCWLEIKNADFKALQNASHCAIEV 506
Score = 42.0 bits (97), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 9/54 (16%)
Query: 119 HKYEFTADEN----VYEEVSEKEYTERVLKRQE---DDWIDDDGGDGYVEDGRE 165
H Y ++DE+ +Y+EV E EY +R KRQE DD++ DD G+GY++ G E
Sbjct: 22 HGYSHSSDEDNDVQLYDEVDENEYKKR--KRQELLQDDFVVDDDGEGYIDRGVE 73
>gi|159129478|gb|EDP54592.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus
fumigatus A1163]
Length = 1462
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 253/404 (62%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ L +L L +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 745 GLMNFVNHCDADTYFIAALVLRLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 804
Query: 461 HEKSYVLPDKQYGKNKKEGEET---GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K +K E+ + + G +KK Y GGLV EP+KG YDKF+++MD
Sbjct: 805 HRNKYICPDKYSSKLQKAEEKNQDGDDDDAGDKKKKDKYKGGLVFEPEKGLYDKFVLVMD 864
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 865 FNSLYPSIIQEYNICFTTVDRTATAENENEEKVPEVPSSDQEQGILPKLIATLVGRRREV 924
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 925 KKLMKSKSATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 984
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G + K N+ Y+ LE+DID +++
Sbjct: 985 STKELAESKQLRVIYGDTDSVMINTNMDTISDALKVGEEFKKSVNERYRLLEIDIDNIFR 1044
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + ++++IL S
Sbjct: 1045 RLLLHAKKKYAAINMTEV-DGKFVDKLEVKGLDMKRREYCALSKEVSQKLLNEIL---SG 1100
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L L +H++++ + + +P+ I +L+K PE
Sbjct: 1101 EDQEL--VLNRVHDYLRDLADKMRGYQIPVQKYVIYTKLSKRPE 1142
Score = 136 bits (343), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 101/177 (57%), Gaps = 9/177 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
RMF+LD E G++ LFGKV K SH S V + NI RK++ LPR K
Sbjct: 345 LRMFWLDYTE----VNGSLCLFGKVKNKHTGSHVSAFVKIDNILRKLFFLPREYRYKHGR 400
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D+I ++ K+ K + +KYAF LP +P +EYL++ Y PA
Sbjct: 401 VTDEEVDMKDVYEEVDEIMSRLKVGMHKIKPCTRKYAFELPDIPKEAEYLKLLYPYDKPA 460
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQ 383
LP + G+TFSHVFGT TS E +L R + GP WL+ +A+ S SWCK+E Q
Sbjct: 461 LPMETKGETFSHVFGTNTSLFEQFVLWRNVMGPCWLKIEDADFTAVSNASWCKFECQ 517
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE ++++EEV ++ Y + + R +DD++ DD G+GY
Sbjct: 6 AKLAELRALRAAGKKRLSTYEIEEQDDIFEEVDDEGYKKIIRDRLDQDDFVVDDNGEGYA 65
Query: 161 EDGREIFDDDIEDVPQKKEKHDKRKKNK 188
+DGRE++++ + D + + + +NK
Sbjct: 66 DDGREVWNERVADYNSESDDEELPGRNK 93
>gi|71001450|ref|XP_755406.1| DNA polymerase alpha catalytic subunit [Aspergillus fumigatus Af293]
gi|66853044|gb|EAL93368.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus
fumigatus Af293]
Length = 1462
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 253/404 (62%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ L +L L +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 745 GLMNFVNHCDADTYFIAALVLRLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 804
Query: 461 HEKSYVLPDKQYGKNKKEGEET---GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K +K E+ + + G +KK Y GGLV EP+KG YDKF+++MD
Sbjct: 805 HRNKYICPDKYSSKLQKAEEKNQDGDDDDAGDKKKKDKYKGGLVFEPEKGLYDKFVLVMD 864
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 865 FNSLYPSIIQEYNICFTTVDRTATAENENEEKVPEVPSSDQEQGILPKLIATLVGRRREV 924
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 925 KKLMKSKSATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 984
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G + K N+ Y+ LE+DID +++
Sbjct: 985 STKELAESKQLRVIYGDTDSVMINTNMDTISDALKVGEEFKKSVNERYRLLEIDIDNIFR 1044
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + ++++IL S
Sbjct: 1045 RLLLHAKKKYAAINMTEV-DGKFVDKLEVKGLDMKRREYCALSKEVSQKLLNEIL---SG 1100
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L L +H++++ + + +P+ I +L+K PE
Sbjct: 1101 EDQEL--VLNRVHDYLRDLADKMRGYQIPVQKYVIYTKLSKRPE 1142
Score = 136 bits (343), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 76/177 (42%), Positives = 101/177 (57%), Gaps = 9/177 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
RMF+LD E G++ LFGKV K SH S V + NI RK++ LPR K
Sbjct: 345 LRMFWLDYTE----VNGSLCLFGKVKNKHTGSHVSAFVKIDNILRKLFFLPREYRYKHGR 400
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D+I ++ K+ K + +KYAF LP +P +EYL++ Y PA
Sbjct: 401 VTDEEVDMKDVYEEVDEIMSRLKVGMHKIKPCTRKYAFELPDIPKEAEYLKLLYPYDKPA 460
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQ 383
LP + G+TFSHVFGT TS E +L R + GP WL+ +A+ S SWCK+E Q
Sbjct: 461 LPMETKGETFSHVFGTNTSLFEQFVLWRNVMGPCWLKIEDADFTAVSNASWCKFECQ 517
Score = 48.1 bits (113), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE ++++EEV ++ Y + + R +DD++ DD G+GY
Sbjct: 6 AKLAELRALRAAGKKRLSTYEIEEQDDIFEEVDDEGYKKIIRDRLDQDDFVVDDNGEGYA 65
Query: 161 EDGREIFDDDIEDVPQKKEKHDKRKKNK 188
+DGRE++++ + D + + + +NK
Sbjct: 66 DDGREVWNERVADYNSESDDEELPGRNK 93
>gi|452839534|gb|EME41473.1| hypothetical protein DOTSEDRAFT_176630 [Dothistroma septosporum
NZE10]
Length = 1475
Score = 299 bits (765), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 178/432 (41%), Positives = 263/432 (60%), Gaps = 24/432 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+K + + YI I + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 737 GLLNFVKMCEIDTYYIAAIALKRQLLPLTKVLTNLAGNSWARTLSGTRAERNEYILLHEF 796
Query: 461 HEKSYVLPDKQYGK---NKK-EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
+ Y+ PDK +GK NK+ E + +KK + GGLV EP+KG YD FI++M
Sbjct: 797 YRNKYICPDKVFGKGAANKRLEEDNPEGEEGDDKKKKDKFKGGLVFEPEKGLYDNFILVM 856
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT---GILPSEIKKLVES 573
DFNSLYPSIIQEYNICFTT+ S+IT E +PE DT GILP I+ LV
Sbjct: 857 DFNSLYPSIIQEYNICFTTV-----NRSEITEEDEKIPEVPDDTSNKGILPRLIRTLVSR 911
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RR+VK LMK + + D +D++Q+ALKLTANSMYGCLG+ SRF+A+PLAAL T+KGR
Sbjct: 912 RREVKKLMKDKSTTEDQRNTWDVKQQALKLTANSMYGCLGYTKSRFYARPLAALTTSKGR 971
Query: 634 EILLNTKSLVENLN-YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
EIL +TK L E+ + VIYGDTDS+M++ N ++ K+G + + N+ Y+ LE++I
Sbjct: 972 EILQSTKDLAESAHALRVIYGDTDSVMVNTNADNILDAIKMGKEFQKSVNEKYELLEIEI 1031
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
D +++ +LL KKKYAA+ + + G ++KG+D+ RR++ QL+ + K +++ +L
Sbjct: 1032 DHIFRRLLLHAKKKYAAIQMVEADGGVWKEKLDVKGLDMKRREYCQLSKDTSKELLNYLL 1091
Query: 753 D-EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK----APEGGKVCI 807
E+S S IH++++ + + +P I QL K P +
Sbjct: 1092 SGEESEVAVS------KIHDYLRSLGEKMRQHAIPPHKYTIYTQLGKDPKEYPNSNSMPA 1145
Query: 808 TQIRLSRNRRGR 819
Q+ L + +G+
Sbjct: 1146 VQVALKKIAKGK 1157
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/189 (39%), Positives = 108/189 (57%), Gaps = 9/189 (4%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ R F+ D E G++ LFGKV ++N+S SC V V NI RK+Y LPR
Sbjct: 335 EDDGSLRFFWTDYTE----VNGSLCLFGKVKNRKNDSFVSCFVKVDNIMRKLYFLPRENR 390
Query: 267 ----LKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
++T E V + VY E D + T++++ K + +KYAF LPG+P +EYL++ Y
Sbjct: 391 RKHGVETDEEVDMGMVYEEVDGLMTKHRVSMHKIKPCTRKYAFELPGIPKEAEYLKLLYP 450
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYE 381
LP D+ G+TFSHVFGT T+ E ++ + I GP WL+ A+ + SWCK E
Sbjct: 451 YDKQPLPMDMQGETFSHVFGTNTNMFEQFVMWKNIMGPCWLQIDNADFNAVNNASWCKLE 510
Query: 382 VQCNQMEKI 390
+Q N+ +I
Sbjct: 511 LQVNKPNEI 519
Score = 42.7 bits (99), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGD 157
+ ++ A + L+ G+ + YE E +YE V ++ Y + V R +DD++ DD G+
Sbjct: 5 RADRLAQLRALR-AAGKTAFNDYEVQEAEPIYETVDDEGYKKVVRSRLDQDDFVVDDNGE 63
Query: 158 GYVEDGREIFDDD 170
GY +DGRE + D+
Sbjct: 64 GYADDGREDWQDE 76
>gi|6015011|sp|Q94636.1|DPOLA_OXYNO RecName: Full=DNA polymerase alpha catalytic subunit
gi|405121|gb|AAA21587.1| large subunit of DNA polymerase alpha [Sterkiella nova]
Length = 1492
Score = 298 bits (764), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 194/434 (44%), Positives = 263/434 (60%), Gaps = 39/434 (8%)
Query: 397 IYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLL 456
+ + + + I T + +++M L V+PL Q+TN+ GN+ R+L R+ERNE LL
Sbjct: 733 VQMAKLFQLIDHTEKDAYLTLQLMNHLQVIPLTKQLTNIAGNLWFRSLQNARAERNEMLL 792
Query: 457 LHAFHEKSYVLPDKQYGKNKK--------EGEETGEANKGKGRKKAAYSGGLVLEPKKGF 508
LH F +K +VLPDK+ K E EE KG RKKAAY+GGLV+EPK GF
Sbjct: 793 LHEFKKKKFVLPDKKQLNAKDLKKNMFADEYEEGDGKTKGGKRKKAAYAGGLVIEPKAGF 852
Query: 509 YDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY------------- 552
YD I+L+DFNSLYPSIIQEYN+CFTT+ P + S++ +Y
Sbjct: 853 YDNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSEMKN--QYKKGENGEEEVDIE 910
Query: 553 ---LPEHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANS 607
LP+ V+ +LP ++ LV+ R+ VK MK L Q +IRQKA+KLTANS
Sbjct: 911 EADLPDKNVNLKDAVLPMVLRDLVQKRKAVKDKMKTEK-DHVKLSQLEIRQKAIKLTANS 969
Query: 608 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVND 666
MYGCLGF +SRF AQ +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ N
Sbjct: 970 MYGCLGFGSSRFHAQAIAALITRTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGSNQ 1029
Query: 667 YDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK-LSNGKMICSQE 725
++G ++K E N LYK LE++IDGV+K +LLLKKKKYAAL LS ++ QE
Sbjct: 1030 LQQALEMGKRLKGEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALKYENFLSPAEVKVVQE 1089
Query: 726 IKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFV 785
+KG+D+VRRDW L+ G++V+ QIL + + L N++E + I +L G +
Sbjct: 1090 MKGLDMVRRDWCPLSKRVGRYVLDQILSGKQREEVVL-----NLNEFLSNIGNELKEGTI 1144
Query: 786 PLTLLEITKQLTKA 799
L ITKQ+TKA
Sbjct: 1145 KLNEFIITKQITKA 1158
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 14/204 (6%)
Query: 187 NKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSS 246
N N N +D LPL D +++DA E+ +++FGK++ E S
Sbjct: 310 NDNALMSNQQDYPLPLNED----GTLSFYWIDAHEE--NNGADLFVFGKIYQHEERKFVS 363
Query: 247 CCVIVQNIDRKIYLLP------RSEHLKTKEPVSIAQVYSEFDQIATQY-KILDFKSRKI 299
C + V + R++++LP R+ +E +V E + + ++ I ++ + +
Sbjct: 364 CSIKVNGMQRELFVLPKMSGKSRAAMTTEEEKEQARKVMMELEGVRKRFPAITKWRCKPV 423
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKG 359
+KYAF LP ++++++Y A P+LPS + G+TF +FG S LE+ +L+RKI+G
Sbjct: 424 TRKYAFELPIQHGEHQFVKIKYDATFPSLPSTVQGNTFECIFGANQSMLESFILKRKIRG 483
Query: 360 PSWLEFPEAEKFPS-RISWCKYEV 382
P W+ +K R +WCK E+
Sbjct: 484 PCWMTIRNPQKVTDFRRTWCKQEI 507
Score = 42.7 bits (99), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 117 VKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIF--DDDIEDV 174
+KH + + ++EE+ + EY + R+ DD+I DD G GY + G EI+ D D+E+V
Sbjct: 2 IKHILQVEETKKIFEEIDDNEYEKIQDSRKNDDFIVDDDGYGYRDHGGEIWDRDGDVEEV 61
Query: 175 -PQKKEKHDKRKKNKNIQN 192
+KK+K + N+NI N
Sbjct: 62 GKKKKKKQNNHDPNENIMN 80
>gi|119481041|ref|XP_001260549.1| DNA polymerase alpha catalytic subunit, putative [Neosartorya
fischeri NRRL 181]
gi|119408703|gb|EAW18652.1| DNA polymerase alpha catalytic subunit, putative [Neosartorya
fischeri NRRL 181]
Length = 1462
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 167/404 (41%), Positives = 254/404 (62%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + +I ++ L +L L +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 745 GLMNFVNHCDADTYFIAALVLRLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 804
Query: 461 HEKSYVLPDKQYGKNKK---EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K +K + ++ + + G +KK Y GGLV EP+KG YDKF+++MD
Sbjct: 805 HRNKYICPDKYSSKLQKVEEKNQDGDDDDAGDKKKKDKYKGGLVFEPEKGLYDKFVLVMD 864
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 865 FNSLYPSIIQEYNICFTTVDRTATAENENEEKVPEVPSSDQEQGILPKLIATLVGRRREV 924
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 925 KKLMKSKSATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 984
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G + K N+ Y+ LE+DID +++
Sbjct: 985 STKELAESKQLRVIYGDTDSVMINTNMDTISDALKVGEEFKKSVNERYRLLEIDIDNIFR 1044
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + +++++L S
Sbjct: 1045 RLLLHAKKKYAAVNMTEV-DGKFVDKLEVKGLDMKRREYCALSKEVSQKLLNEVL---SG 1100
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L L +H++++ + + +P+ I +L+K PE
Sbjct: 1101 EDQEL--VLNRVHDYLRDLADKMRGYQIPVQKYVIYTKLSKRPE 1142
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 102/184 (55%), Gaps = 9/184 (4%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--- 268
RMF+LD E G++ LFGKV K SH S V + NI RK++ LPR K
Sbjct: 345 LRMFWLDYTE----VNGSLCLFGKVKNKHTGSHVSAFVKIDNILRKLFFLPREYRYKHGR 400
Query: 269 -TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPA 327
T E V + VY E D++ ++ K+ K + +KYAF LP +P +EYL++ Y P
Sbjct: 401 VTDEEVDMKDVYEEVDEMMSRLKVGMHKIKPCTRKYAFELPDIPKEAEYLKLLYPYDKPT 460
Query: 328 LPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
LP + G+TFSHVFGT TS E +L + I GP WL+ +A+ + SWCK+E Q +
Sbjct: 461 LPMETKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEDADFTAVNNASWCKFECQVAR 520
Query: 387 MEKI 390
I
Sbjct: 521 PASI 524
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE +++YEEV ++ Y + + R +DD++ DD G+GY
Sbjct: 6 AKLAELRALRAAGKKRLSTYEIEEQDDIYEEVDDEGYKKIIRDRLDQDDFVVDDNGEGYA 65
Query: 161 EDGREIFDDDIED 173
+DGRE++++ + D
Sbjct: 66 DDGREVWNERVAD 78
>gi|391865026|gb|EIT74318.1| DNA polymerase alpha, catalytic subunit [Aspergillus oryzae 3.042]
Length = 1460
Score = 298 bits (763), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 251/404 (62%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + ++ ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 743 GLMNFVNHCDTDTYFVAALVLRLQMLPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 802
Query: 461 HEKSYVLPDKQYGKNKKEG---EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K +K ++ + + +KK Y GGLV EP+KG YD+F+++MD
Sbjct: 803 HRNKYICPDKYSAKLQKAEVKLQDGDDDDATDKKKKDKYKGGLVFEPEKGLYDRFVLVMD 862
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 863 FNSLYPSIIQEYNICFTTVERTATAENENEEKVPEVPTSDQEQGILPRLIATLVGRRREV 922
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 923 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 982
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G + K N+ Y+ LE+DID +++
Sbjct: 983 STKELAESKQLRVIYGDTDSVMINTNMDTLSDALKVGEEFKKSVNERYRLLEIDIDNIFR 1042
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + +++++L +
Sbjct: 1043 RLLLHAKKKYAAINMTEM-DGKYVDKLEVKGLDMKRREYCALSKEVSQRLLNEVLSGEDQ 1101
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L +H++++ + + VP+ I +L+K PE
Sbjct: 1102 -----EIVLNRVHDYLRDLAGKMREFAVPVQKYVIYTKLSKRPE 1140
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 109/186 (58%), Gaps = 11/186 (5%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ RMF++D F ++ G++ LFGKV K+ +++S V V NI RK+Y LPR
Sbjct: 338 EDDGSLRMFWID-FTEVN---GSLCLFGKVRNKQTGNYASAFVKVDNILRKLYFLPREYR 393
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
K T E V + VY+E D + ++ K+ K + +KYAF +PGVP +EYL++ Y
Sbjct: 394 HKHGRDTDEEVDMEDVYNEVDGMMSRLKVGMHKIKPCTRKYAFEMPGVPKETEYLKLLYP 453
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKY 380
PALP + G+TFSHVFGT TS E +L + I GP WL F E F + SWCK+
Sbjct: 454 YDKPALPMETKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLRF-EGADFSAVNNASWCKF 512
Query: 381 EVQCNQ 386
E Q ++
Sbjct: 513 ECQVSK 518
Score = 47.4 bits (111), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE +++YEEV ++ Y + + R EDD++ DD G+GY
Sbjct: 6 AKLAELRALRASGKKRISTYEVEEQDDIYEEVDDEGYKKIIRNRLDEDDFVVDDNGEGYA 65
Query: 161 EDGREIFDDDIED 173
+DGRE + D D
Sbjct: 66 DDGREDWTVDYHD 78
>gi|238493215|ref|XP_002377844.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus flavus
NRRL3357]
gi|220696338|gb|EED52680.1| DNA polymerase alpha catalytic subunit, putative [Aspergillus flavus
NRRL3357]
Length = 1460
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 251/404 (62%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + ++ ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 743 GLMNFVNHCDTDTYFVAALVLRLQMLPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 802
Query: 461 HEKSYVLPDKQYGKNKKEG---EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K +K ++ + + +KK Y GGLV EP+KG YD+F+++MD
Sbjct: 803 HRNKYICPDKYSAKLQKAEVKLQDGDDDDATDKKKKDKYKGGLVFEPEKGLYDRFVLVMD 862
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 863 FNSLYPSIIQEYNICFTTVERTATAENENEEKVPEVPTSDQEQGILPRLIATLVGRRREV 922
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 923 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 982
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G + K N+ Y+ LE+DID +++
Sbjct: 983 STKELAESKQLRVIYGDTDSVMINTNMDTLSDALKVGEEFKKSVNERYRLLEIDIDNIFR 1042
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + +++++L +
Sbjct: 1043 RLLLHAKKKYAAINMTEM-DGKYVDKLEVKGLDMKRREYCALSKEVSQRLLNEVLSGEDQ 1101
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L +H++++ + + VP+ I +L+K PE
Sbjct: 1102 -----EIVLNRVHDYLRDLAGKMREFAVPVQKYVIYTKLSKRPE 1140
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 109/186 (58%), Gaps = 11/186 (5%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ RMF++D F ++ G++ LFGKV K+ +++S V V NI RK+Y LPR
Sbjct: 338 EDDGSLRMFWID-FTEVN---GSLCLFGKVRNKQTGNYASAFVKVDNILRKLYFLPREYR 393
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
K T E V + VY+E D + ++ K+ K + +KYAF +PGVP +EYL++ Y
Sbjct: 394 HKHGRDTDEEVDMEDVYNEVDGMMSRLKVGMHKIKPCTRKYAFEMPGVPKETEYLKLLYP 453
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKY 380
PALP + G+TFSHVFGT TS E +L + I GP WL F E F + SWCK+
Sbjct: 454 YDKPALPMETKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLRF-EGADFSAVNNASWCKF 512
Query: 381 EVQCNQ 386
E Q ++
Sbjct: 513 ECQVSK 518
Score = 47.0 bits (110), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE +++YEEV ++ Y + + R EDD++ DD G+GY
Sbjct: 6 AKLAELRALRASGKKRISTYEVEEQDDIYEEVDDEGYKKIIRNRLDEDDFVVDDNGEGYA 65
Query: 161 EDGREIFDDDIED 173
+DGRE + D D
Sbjct: 66 DDGREDWTVDYHD 78
>gi|374108462|gb|AEY97369.1| FAER381Cp [Ashbya gossypii FDAG1]
Length = 1435
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 180/434 (41%), Positives = 261/434 (60%), Gaps = 31/434 (7%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+V ++ + +SS+ +I + +L L Q+TN+ GN TL G R+ RNEF+LLH F+
Sbjct: 716 LVLALREAITNSSFSAEIAFRIQILSLTKQLTNLAGNSWGHTLGGTRAGRNEFILLHEFY 775
Query: 462 EKSYVLPDKQY----GKNKKEGEETGEANKG----KGRKKAAYSGGLVLEPKKGFYDKFI 513
+Y+LPDK+ +++ +T + + KKA Y GGLV +P KG + +I
Sbjct: 776 RNNYILPDKESRQMRSARQQQNVDTPDGDVATDSRNSNKKAKYQGGLVFDPDKGLHKNYI 835
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLV 571
++MDFNSLYPSIIQE+NICFTT+ R D D LP+ + G+LP + LV
Sbjct: 836 LVMDFNSLYPSIIQEFNICFTTVE-RNPHDID------ELPQVPTEAKPGVLPRLLANLV 888
Query: 572 ESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVT 629
E RR+VK LM N +D + DIRQ+ALKLTANSMYGCLG+ NSRF+A+PLA LVT
Sbjct: 889 ERRREVKKLM---NAETDAHKKAECDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVT 945
Query: 630 AKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
KGREIL+NT+ L E+L V+YGDTDS+MI ++Y IG K N+ Y+ LE
Sbjct: 946 NKGREILMNTRQLAESLGLAVVYGDTDSVMIDTGCDNYREALSIGENFKKLVNERYRLLE 1005
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+DID V+K +LL KKKYAAL++S G I S E+KG+D+ RR++ L+ E V++
Sbjct: 1006 IDIDNVFKKLLLHAKKKYAALNVSFDKAGNEITSLEVKGLDMRRREYCPLSKEVSTQVLN 1065
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK----APEGGKV 805
IL +Q + L+N++++M+ I++ ++N + +I +L+K P G +
Sbjct: 1066 TILSDQDS-----ESALENVYDYMETIKSKIENNEIRADKFKINTRLSKDPKSYPNGKTM 1120
Query: 806 CITQIRLSRNRRGR 819
Q+ L GR
Sbjct: 1121 PAVQVALKMRAVGR 1134
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 93/183 (50%), Gaps = 23/183 (12%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
N N +K+D + ATD F MF+LD E ++ LFGK+ N H S
Sbjct: 302 NFNNKYSKEDIVDQATDS-----FSMFWLDYTE----LETSLLLFGKIKTL-NGKHISAM 351
Query: 249 VIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNL 307
V V I R++Y LPR E + +V+ E + +Y + +++ +K YAF L
Sbjct: 352 VQVAGIYRELYFLPR-------EGKTALEVHEEIIPLLMDKYGLSTIRAKPEKKMYAFEL 404
Query: 308 PGVPDLSEYLEVRYSAKCP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSW 362
+P +EYL+V + P +PSDL GDTF HVFG +S E+ +++R+I GP W
Sbjct: 405 ADIPKEAEYLKVLLPYETPKCKNVVIPSDLCGDTFCHVFGGNSSIFESFVIQRRILGPCW 464
Query: 363 LEF 365
L
Sbjct: 465 LSI 467
>gi|45190983|ref|NP_985237.1| AER381Cp [Ashbya gossypii ATCC 10895]
gi|44984051|gb|AAS53061.1| AER381Cp [Ashbya gossypii ATCC 10895]
Length = 1435
Score = 298 bits (762), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 180/434 (41%), Positives = 261/434 (60%), Gaps = 31/434 (7%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+V ++ + +SS+ +I + +L L Q+TN+ GN TL G R+ RNEF+LLH F+
Sbjct: 716 LVLALREAITNSSFSAEIAFRIQILSLTKQLTNLAGNSWGHTLGGTRAGRNEFILLHEFY 775
Query: 462 EKSYVLPDKQY----GKNKKEGEETGEANKG----KGRKKAAYSGGLVLEPKKGFYDKFI 513
+Y+LPDK+ +++ +T + + KKA Y GGLV +P KG + +I
Sbjct: 776 RNNYILPDKESRQMRSARQQQNVDTPDGDVATDSRNSNKKAKYQGGLVFDPDKGLHKNYI 835
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLV 571
++MDFNSLYPSIIQE+NICFTT+ R D D LP+ + G+LP + LV
Sbjct: 836 LVMDFNSLYPSIIQEFNICFTTVE-RNPHDID------ELPQVPTEAKPGVLPRLLANLV 888
Query: 572 ESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVT 629
E RR+VK LM N +D + DIRQ+ALKLTANSMYGCLG+ NSRF+A+PLA LVT
Sbjct: 889 ERRREVKKLM---NAETDAHKKAECDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVT 945
Query: 630 AKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
KGREIL+NT+ L E+L V+YGDTDS+MI ++Y IG K N+ Y+ LE
Sbjct: 946 NKGREILMNTRQLAESLGLAVVYGDTDSVMIDTGCDNYREALSIGENFKKLVNERYRLLE 1005
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+DID V+K +LL KKKYAAL++S G I S E+KG+D+ RR++ L+ E V++
Sbjct: 1006 IDIDNVFKKLLLHAKKKYAALNVSFDKAGNEITSLEVKGLDMRRREYCPLSKEVSTQVLN 1065
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK----APEGGKV 805
IL +Q + L+N++++M+ I++ ++N + +I +L+K P G +
Sbjct: 1066 TILSDQDS-----ESALENVYDYMETIKSKIENNEIRADKFKINTRLSKDPKSYPNGKTM 1120
Query: 806 CITQIRLSRNRRGR 819
Q+ L GR
Sbjct: 1121 PAVQVALKMRAVGR 1134
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 93/183 (50%), Gaps = 23/183 (12%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
N N +K+D + ATD F MF+LD E ++ LFGK+ N H S
Sbjct: 302 NFNNKYSKEDIVDQATDS-----FSMFWLDYTE----LETSLLLFGKIKTL-NGKHISAM 351
Query: 249 VIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNL 307
V V I R++Y LPR E + +V+ E + +Y + +++ +K YAF L
Sbjct: 352 VQVAGIYRELYFLPR-------EGKTALEVHEEIIPLLMDKYGLSTIRAKPEKKMYAFEL 404
Query: 308 PGVPDLSEYLEVRYSAKCP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSW 362
+P +EYL+V + P +PSDL GDTF HVFG +S E+ +++R+I GP W
Sbjct: 405 ADIPKEAEYLKVLLPYETPKCKNVVIPSDLCGDTFCHVFGGNSSIFESFVIQRRILGPCW 464
Query: 363 LEF 365
L
Sbjct: 465 LSI 467
>gi|37681580|gb|AAQ97671.1| DNA polymerase alpha [Paraurostyla weissei]
Length = 1496
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 186/426 (43%), Positives = 259/426 (60%), Gaps = 38/426 (8%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ + ++ T S + +M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 761 LFQLVEHTEKDSYFTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 820
Query: 462 EKSYVLPDKQYGKNKKE------GEETGEANKGKGRKK----AAYSGGLVLEPKKGFYDK 511
+K ++LPDK+ N K+ GE+ EA + A Y+GGLV+EPK GFYD
Sbjct: 821 KKQFILPDKK-ASNAKDFKRNLVGEDFEEAEPTGKKGGKRKKAQYAGGLVIEPKAGFYDN 879
Query: 512 FIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDI-----------TTLCEYLPEHQ 557
I+L+DFNSLYPSIIQEYN+CFTT+ P + S+I LP+
Sbjct: 880 IILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSEIKNQFKVGEEDEEVEESSLPDKN 939
Query: 558 VDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFP 615
V+ +LP+ ++ LV+ R+ VK MK S L Q +IRQKA+KLTANSMYGCLGF
Sbjct: 940 VNIKDAVLPNVLRDLVQKRKAVKEKMKNEK-DSVKLQQLEIRQKAIKLTANSMYGCLGFG 998
Query: 616 NSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIG 674
+SRF A+ +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ N ++G
Sbjct: 999 SSRFHAKAIAALITRTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGSNQLQQSLEMG 1058
Query: 675 NQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRR 734
++K E N+LYK LE++IDGV+K +LLLKKKKYAAL ++ QE+KG+D+VRR
Sbjct: 1059 KRLKVEVNQLYKCLEIEIDGVFKSLLLLKKKKYAALKYEGFGTPEVKVVQEMKGLDMVRR 1118
Query: 735 DWSQLASEAGKFVISQILD--EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEI 792
DW L+ G +V+ QIL ++ +L++ L +I + MK R LD I
Sbjct: 1119 DWCPLSKTVGNYVLGQILSGKQREEVVLNLNEYLSDIGDKMKTNRITLDQYI-------I 1171
Query: 793 TKQLTK 798
TKQLT+
Sbjct: 1172 TKQLTR 1177
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 27/230 (11%)
Query: 168 DDDIEDVPQKKEKHDKRKKNKNIQNPNA----KDDSLPLATDHENKKVFRMFFLDAFEDI 223
+D+ + Q+ H+ + N +PNA +D LPL D +++DA E+
Sbjct: 314 NDEWNQLKQQNSAHN----DYNQIDPNAALKAQDYPLPLNQD----GTLSFYWIDAHEE- 364
Query: 224 YKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLP------RSEHLKTKEPVSIAQ 277
+Y+FGK++ E + SC + V + R+IY LP R K +E +
Sbjct: 365 -NNGADLYIFGKIYQPEVKQYVSCSLKVNGMQREIYALPKMKGKARGTLTKEEESQQVRS 423
Query: 278 VYSEFDQIATQ--YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGD 335
V E D I + I ++ + + KKYAF +P +L+++Y + P+LPS+L+G+
Sbjct: 424 VQLELDDIRKKRFANITKWRCKPVTKKYAFEMPIQHGEHLFLKMKYDSTMPSLPSNLTGN 483
Query: 336 TFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEK---FPSRISWCKYEV 382
TF +FG S LE +++RKIKGP W+ +K FP +WC+ E+
Sbjct: 484 TFECLFGANQSMLELFIIKRKIKGPCWMTVKNPKKVIDFPK--TWCRQEI 531
>gi|302852093|ref|XP_002957568.1| hypothetical protein VOLCADRAFT_107737 [Volvox carteri f.
nagariensis]
gi|300257085|gb|EFJ41338.1| hypothetical protein VOLCADRAFT_107737 [Volvox carteri f.
nagariensis]
Length = 1606
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 170/415 (40%), Positives = 245/415 (59%), Gaps = 42/415 (10%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++ + + IM L+VLPL Q++ + G + SRTL G R++R E LLLH F
Sbjct: 814 GVLRLLRHGESDAWLALGIMFHLSVLPLTKQLSVLSGQLWSRTLAGQRAQRIEMLLLHEF 873
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAA------------------------- 495
H + ++ PDKQ K+K+ ++ EA++
Sbjct: 874 HGRKFITPDKQTYKDKQRKQQA-EADEYDDAGGDDDGEDDAGGGKKGKKGKKGSASAAAA 932
Query: 496 ------YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 549
YSGGLVLEPKKG YDK +I++DFNSLYPSIIQEYNICFTT V QD + L
Sbjct: 933 KSNGPKYSGGLVLEPKKGLYDKIVIILDFNSLYPSIIQEYNICFTT--VSRPQDGSLPAL 990
Query: 550 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
+ LP+ ++ LV R+QVKA M + Q +RQ+A+KLTANSMY
Sbjct: 991 PNPATAAK-GLAPLPAVLQSLVNRRKQVKAAMSS-ERNPLTRQQLQVRQQAIKLTANSMY 1048
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYD 668
GCLGF SRF+AQPLA L+TA+GR IL +T LV+ ++ EVIYGDTDS+M++ + + +
Sbjct: 1049 GCLGFGASRFYAQPLAELITAQGRSILSSTVDLVQGSIGAEVIYGDTDSIMVATHSDSVE 1108
Query: 669 SVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKG 728
++G +IK E NK YK LE+++DG+++ +LLLKKKKYAA+ + GK++ E KG
Sbjct: 1109 EARELGAKIKKEVNKRYKLLEIELDGIFRSILLLKKKKYAAMKLELEPGGKVVQVMEQKG 1168
Query: 729 VDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNG 783
+D+VRRDW L+ + G F +S IL + + ++ + IH H+++ L G
Sbjct: 1169 LDIVRRDWCPLSKDEGNFALSAIL-----SGGNREEVVAEIHNHLRQTAEKLRAG 1218
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 80/300 (26%), Positives = 130/300 (43%), Gaps = 44/300 (14%)
Query: 124 TADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIEDVPQKKEKHDK 183
T V V+ + + +ED+ + D G + + D D E +P D
Sbjct: 281 TTAPAVEAAVTPLPVKQEETQNEEDEHMPDVGYPAPLPG--DAGDADGEPLPAPSPLPDS 338
Query: 184 RKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNS 243
+ P +LPL ++ V + LDA+E+ +PG V LFGKV +
Sbjct: 339 STPG-SAPGPG----TLPL----DSNGVMPFYMLDAYENPDVRPGEVLLFGKV--ESEGR 387
Query: 244 HSSCCVIVQNIDRKIYLLPRSE------------HLKTKEPVS------------IAQVY 279
SC V V+ + R + ++PR E KE S + V
Sbjct: 388 WLSCAVSVRGLQRCLLVVPRPEVFEDVDGSIARLEAAVKEDPSRRVELIKLLQERCSSVR 447
Query: 280 SEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEY-LEVRYSAKCPALPSDL----SG 334
E + T+ + + +++ YAF + VP ++ ++VRY A P + S SG
Sbjct: 448 EEVRGLLTRAGVGSMRMVPVKRSYAFEVKDVPHGEQWVIKVRYPAHMPTVQSPTGGPPSG 507
Query: 335 DTFSHVFGTKTSFLENLLLERKIKGPSWLEF--PEAEKFPSRISWCKYEVQCNQMEKIRS 392
TF +FG + S LE L L+R+IKGP WL P+ ++ ++ +WCK EV + +K+ S
Sbjct: 508 RTFVAIFGAQQSCLEALQLKRRIKGPGWLGVFQPQRIEYGNQATWCKVEVVVDSAKKLLS 567
>gi|349580835|dbj|GAA25994.1| K7_Pol1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1468
Score = 297 bits (760), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 255/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 768 IQLLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 827
Query: 483 GEANKGK--GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E N KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 828 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 884
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 885 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 942
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 943 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 1002
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 1003 DTGCDNYADAIKIGLGFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNE 1062
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 1063 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 1117
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 1118 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 1160
Score = 95.9 bits (237), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 19/187 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 351 TFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----QGK 401
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 402 TPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSR 459
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 460 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVS 518
Query: 384 CNQMEKI 390
++ + I
Sbjct: 519 VDKPQNI 525
>gi|365763311|gb|EHN04840.1| Pol1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1468
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 255/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 768 IQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 827
Query: 483 GEANKGK--GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E N KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 828 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 884
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 885 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 942
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 943 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 1002
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 1003 DTGCDNYADAIKIGLGFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNG 1062
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 1063 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 1117
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 1118 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 1160
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 19/187 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 351 TFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGK 401
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 402 TPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSR 459
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 460 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVS 518
Query: 384 CNQMEKI 390
++ + I
Sbjct: 519 VDKPQNI 525
>gi|151944432|gb|EDN62710.1| DNA polymerase I alpha subunit p180 [Saccharomyces cerevisiae YJM789]
Length = 1468
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 255/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 768 IQLLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 827
Query: 483 GEANKGK--GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E N KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 828 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 884
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 885 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 942
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 943 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 1002
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 1003 DTGCDNYADAIKIGLGFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNE 1062
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 1063 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 1117
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 1118 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 1160
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 19/187 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+MF+LD E T+ LFGKV +K+ N S+ V + + R+++ LPR + K
Sbjct: 351 TFQMFWLDYCE----VNNTLILFGKVKLKDGNCVSAM-VQINGLCRELFFLPR----EGK 401
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 402 TPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSR 459
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 460 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVS 518
Query: 384 CNQMEKI 390
++ + I
Sbjct: 519 VDKPQNI 525
>gi|190409091|gb|EDV12356.1| DNA polymerase I alpha subunit p180 [Saccharomyces cerevisiae
RM11-1a]
Length = 1468
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 255/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 768 IQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 827
Query: 483 GEANKGK--GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E N KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 828 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 884
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 885 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 942
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 943 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 1002
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 1003 DTGCDNYADAIKIGLGFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNG 1062
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 1063 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 1117
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 1118 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 1160
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 19/187 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 351 TFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGK 401
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 402 TPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSR 459
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 460 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVS 518
Query: 384 CNQMEKI 390
++ + I
Sbjct: 519 VDKPQNI 525
>gi|256271651|gb|EEU06692.1| Pol1p [Saccharomyces cerevisiae JAY291]
Length = 1468
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 255/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 768 IQLLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 827
Query: 483 GEANKGK--GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E N KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 828 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 884
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 885 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 942
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 943 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 1002
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 1003 DTGCDNYADAIKIGLGFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNG 1062
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 1063 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 1117
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 1118 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 1160
Score = 95.5 bits (236), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 19/187 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 351 TFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGK 401
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 402 TPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSR 459
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 460 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVS 518
Query: 384 CNQMEKI 390
++ + I
Sbjct: 519 VDRPQNI 525
>gi|317157024|ref|XP_001826175.2| DNA polymerase alpha catalytic subunit [Aspergillus oryzae RIB40]
Length = 1939
Score = 296 bits (759), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 251/404 (62%), Gaps = 9/404 (2%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + ++ ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 1222 GLMNFVNHCDTDTYFVAALVLRLQMLPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 1281
Query: 461 HEKSYVLPDKQYGKNKKEG---EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K +K ++ + + +KK Y GGLV EP+KG YD+F+++MD
Sbjct: 1282 HRNKYICPDKYSAKLQKAEVKLQDGDDDDATDKKKKDKYKGGLVFEPEKGLYDRFVLVMD 1341
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 1342 FNSLYPSIIQEYNICFTTVERTATAENENEEKVPEVPTSDQEQGILPRLIATLVGRRREV 1401
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 1402 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 1461
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G + K N+ Y+ LE+DID +++
Sbjct: 1462 STKELAESKQLRVIYGDTDSVMINTNMDTLSDALKVGEEFKKSVNERYRLLEIDIDNIFR 1521
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + +++++L +
Sbjct: 1522 RLLLHAKKKYAAINMTEM-DGKYVDKLEVKGLDMKRREYCALSKEVSQRLLNEVLSGEDQ 1580
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L +H++++ + + VP+ I +L+K PE
Sbjct: 1581 -----EIVLNRVHDYLRDLAGKMREFAVPVQKYVIYTKLSKRPE 1619
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 110/190 (57%), Gaps = 11/190 (5%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ RMF++D F ++ G++ LFGKV K+ +++S V V NI RK+Y LPR
Sbjct: 817 EDDGSLRMFWID-FTEVN---GSLCLFGKVRNKQTGNYASAFVKVDNILRKLYFLPREYR 872
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
K T E V + VY+E D + ++ K+ K + +KYAF +PGVP +EYL++ Y
Sbjct: 873 HKHGRDTDEEVDMEDVYNEVDGMMSRLKVGMHKIKPCTRKYAFEMPGVPKETEYLKLLYP 932
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKY 380
PALP + G+TFSHVFGT TS E +L + I GP WL F E F + SWCK+
Sbjct: 933 YDKPALPMETKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLRF-EGADFSAVNNASWCKF 991
Query: 381 EVQCNQMEKI 390
E Q ++ I
Sbjct: 992 ECQVSKPALI 1001
Score = 47.8 bits (112), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 83 WKYIQNSLDSNICLIDK-TNKFAAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYT 139
WKY +D I + A +L+ L+ G K YE +++YEEV ++ Y
Sbjct: 463 WKYEPEVIDRWIFYCGAMASARAKLAELRALRASGKKRISTYEVEEQDDIYEEVDDEGYK 522
Query: 140 ERVLKR-QEDDWIDDDGGDGYVEDGREIFDDDIED 173
+ + R EDD++ DD G+GY +DGRE + D D
Sbjct: 523 KIIRNRLDEDDFVVDDNGEGYADDGREDWTVDYHD 557
>gi|172209|gb|AAA34888.1| polymerase I [Saccharomyces cerevisiae]
Length = 1468
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 255/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 768 IQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 827
Query: 483 GEANKGK--GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E N KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 828 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 884
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 885 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 942
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 943 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 1002
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 1003 DTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNG 1062
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 1063 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 1117
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 1118 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 1160
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 19/187 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 351 TFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGK 401
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 402 TPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSR 459
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 460 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVS 518
Query: 384 CNQMEKI 390
++ + I
Sbjct: 519 VDKPQNI 525
>gi|398364843|ref|NP_014297.3| Pol1p [Saccharomyces cerevisiae S288c]
gi|1706503|sp|P13382.2|DPOA_YEAST RecName: Full=DNA polymerase alpha catalytic subunit A; AltName:
Full=DNA polymerase I subunit A; AltName: Full=DNA
polymerase alpha:primase complex p180 subunit; Short=DNA
polymerase-primase complex p180 subunit; Short=Pol
alpha-primase complex p180 subunit
gi|929851|emb|CAA90524.1| DNA Polymerase I [Saccharomyces cerevisiae]
gi|1302016|emb|CAA95978.1| CDC17 [Saccharomyces cerevisiae]
gi|285814549|tpg|DAA10443.1| TPA: Pol1p [Saccharomyces cerevisiae S288c]
gi|392296888|gb|EIW07989.1| Pol1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1468
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 255/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 768 IQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 827
Query: 483 GEANKGK--GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E N KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 828 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 884
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 885 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 942
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 943 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 1002
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 1003 DTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNG 1062
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 1063 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 1117
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 1118 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 1160
Score = 95.5 bits (236), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 19/187 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 351 TFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGK 401
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 402 TPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSR 459
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 460 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVS 518
Query: 384 CNQMEKI 390
++ + I
Sbjct: 519 VDKPQNI 525
>gi|367015308|ref|XP_003682153.1| hypothetical protein TDEL_0F01310 [Torulaspora delbrueckii]
gi|359749815|emb|CCE92942.1| hypothetical protein TDEL_0F01310 [Torulaspora delbrueckii]
Length = 1448
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 181/414 (43%), Positives = 254/414 (61%), Gaps = 32/414 (7%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK------ 476
+ +L L Q+TN+ GN S+TL G R+ RNE++LLH F Y++PDK+ K +
Sbjct: 740 IQLLSLTKQLTNLAGNAWSQTLGGTRAGRNEYILLHEFSRNGYIVPDKETNKTRAQRARK 799
Query: 477 -KEGEETGEANKG-KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT 534
+E GE KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFT
Sbjct: 800 QEEALVDGEPPDAIPSSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFT 859
Query: 535 TIPVRMLQDSDITTLCEYLPEHQVD---TGILPSEIKKLVESRRQVKALMKQPNLSSDLL 591
T+ R L+D+D LP VD G+LP + LV+ RR+VK +M SD
Sbjct: 860 TVD-RNLEDAD------ELPNAPVDKKEQGVLPRLLANLVQRRREVKKIMAS---ESDPH 909
Query: 592 --MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYE 649
+Q DIRQ+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E+++
Sbjct: 910 KRVQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMSLL 969
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAA 709
V+YGDTDS+MI + Y +IGN K N+ Y+ LE+DID V+K +LL KKKYAA
Sbjct: 970 VVYGDTDSVMIDSGCDSYTGALEIGNNFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAA 1029
Query: 710 LSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
L+ S NGK E+KG+D+ RR++ L+ + V++ IL +Q + LQ
Sbjct: 1030 LNASLDKNGKEHTVLEVKGLDMKRREYCPLSKDVSVHVLNTILSDQDP-----ETALQRT 1084
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKAP---EGGK-VCITQIRLSRNRRGR 819
+E+++ IR ++ + + +I +L+K P GGK + Q+ L + GR
Sbjct: 1085 YEYLEGIRNQVEQNEIRMDRYKINTKLSKDPGAYPGGKNMPAVQVALRMRKNGR 1138
Score = 90.5 bits (223), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 89/185 (48%), Gaps = 17/185 (9%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
F+MF+LD E ++ LFGK+ +N S V ++ + R++Y LPR + K
Sbjct: 324 FKMFWLDYCE----VDNSLVLFGKIKTNDNKLVSGM-VQIKGLCRELYFLPR----EGKT 374
Query: 272 PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP----- 326
P + + + +Y I +S+ KY F LP VP S+YL+V P
Sbjct: 375 PQDVHEEIIPL--LLGKYGIDTLRSKPERMKYCFELPEVPRESDYLKVLLPFDTPKSKYD 432
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCN 385
+PSDLS DTF HVFG + E +++KI GP WLEF + S C EV N
Sbjct: 433 TIPSDLSSDTFHHVFGGNANIFETFAIQKKIMGPCWLEFKNGDFNALQNASNCALEVVVN 492
Query: 386 QMEKI 390
+ I
Sbjct: 493 NPQDI 497
>gi|50288441|ref|XP_446650.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525958|emb|CAG59577.1| unnamed protein product [Candida glabrata]
Length = 1454
Score = 296 bits (758), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 175/405 (43%), Positives = 253/405 (62%), Gaps = 20/405 (4%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK--NKKEGE 480
+ +L L Q+TN+ GN S+TL G R+ RNE++LLH F Y++PDK+ K N++
Sbjct: 754 IQILSLTKQLTNLAGNAWSQTLGGTRAGRNEYILLHEFARNGYIVPDKETQKMRNQRLRA 813
Query: 481 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
+ G KK+ Y GGLV +P+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 814 QDGSDEPEGSSKKSKYQGGLVFDPEKGLHTNYVLVMDFNSLYPSIIQEFNICFTTV---- 869
Query: 541 LQDSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQ 598
D D+ + E +P G+LP + LVE RR+VK +MK L Q DIRQ
Sbjct: 870 --DRDVENIDELPEVPSADKAQGVLPRLLANLVERRREVKKIMKTETDPHKRL-QCDIRQ 926
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSL 658
+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+
Sbjct: 927 QALKLTANSMYGCLGYVNSRFYARPLAMLVTNKGREILMNTRQLAESMNLIVVYGDTDSV 986
Query: 659 MISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
MI N ++Y KIGN K+ N+ Y+ LE+DID V+K +LL KKKYAAL++S G
Sbjct: 987 MIDTNCDNYHDAIKIGNNFKTLVNERYRLLEIDIDNVFKKLLLHAKKKYAALNVSINKEG 1046
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
K E+KG+D+ RR++ L+ + V++ IL +D + LQ ++ +++ +R
Sbjct: 1047 KEETVLEVKGLDMKRREFCPLSRDISIHVLNTIL-----SDKDPETALQEVYYYLEDMRE 1101
Query: 779 DLDNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
++ + + +I +L+K P GGK + Q+ L + GR
Sbjct: 1102 KIEKDEIRVDKYKINTKLSKDPSAYPGGKNMPAVQVALRMRKTGR 1146
Score = 88.2 bits (217), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 16/160 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+M++ D F ++ T+ LFGK+ + H S + + + R++Y LPR + +
Sbjct: 337 TFKMYWFD-FTEVN---NTLVLFGKIKLL-TGEHVSAMIQIDGMCRELYFLPR----EGR 387
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
+P I + + +Y + + +++ KYAF LPG+P S+YL+V P
Sbjct: 388 KPEEIHEEIIPL--LMDKYGLPNIRAKPEHMKYAFELPGIPHESDYLKVLLPFNTPKSSR 445
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF 365
+P DLS +TF HVFG T+ E+ +++ KI GP WLE
Sbjct: 446 DTIPPDLSSETFHHVFGGNTNIFESFVVQNKIMGPCWLEI 485
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 101 NKFAAFQKLKDL-KGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQE---DDWIDDDGG 156
+K A +KL+ L KG+ + + + +Y+E+ EKEY R KRQE DD++ DD G
Sbjct: 6 DKLAKLKKLQALRKGKNANDEDDEDNYDKIYDEIDEKEYRNR--KRQELLRDDFVVDDDG 63
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNP 193
GYV+ G E + ED E + K Q P
Sbjct: 64 LGYVDRGVEEEFNSEEDYSSNDELDNSTSKGNKKQQP 100
>gi|255713646|ref|XP_002553105.1| KLTH0D09064p [Lachancea thermotolerans]
gi|238934485|emb|CAR22667.1| KLTH0D09064p [Lachancea thermotolerans CBS 6340]
Length = 1453
Score = 295 bits (756), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 249/401 (62%), Gaps = 27/401 (6%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY--GKN 475
+I + +L L Q+T + GN +TL G R+ RNE++LLH F +Y++PDK+ +N
Sbjct: 746 EIAFRIQILSLTKQLTVLAGNAWCQTLGGTRAGRNEYILLHEFERNNYIVPDKETKSMRN 805
Query: 476 KKEGEETGEANKGKG------RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
+++ EA G KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQEY
Sbjct: 806 QRQQRAREEAGLDGGDEVQVSSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEY 865
Query: 530 NICFTTIPVRMLQDSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKALMK-QPNL 586
NICFTT+ + D + + E +P ++ G+LP + LV+ RR+VK L+K +P+
Sbjct: 866 NICFTTV------ERDPSNIDELPNVPSSEMAQGVLPRLLASLVQKRREVKKLLKTEPDP 919
Query: 587 SSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL 646
Q DIRQ+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E+L
Sbjct: 920 HKR--TQCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESL 977
Query: 647 NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
V+YGDTDS+MI + Y KIG K N+ Y+ LE+D D V++ +LL KKK
Sbjct: 978 ALTVVYGDTDSVMIDTGSDSYMEAIKIGENFKKLVNERYRLLEIDTDNVFRKLLLHAKKK 1037
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 766
YAAL++ +G E+KG+D+ RR++ L+ E V+ IL +D + L
Sbjct: 1038 YAALTVVFDKSGAEKTLLEVKGLDMRRREYCPLSKEVSTHVLETIL-----SDKEPETAL 1092
Query: 767 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE---GGK 804
Q+++E+++ IR ++N + + +I +L+K P+ GGK
Sbjct: 1093 QDVYEYLEDIREKVENNTIRVDKYKINTRLSKDPKAYPGGK 1133
Score = 108 bits (269), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 104/191 (54%), Gaps = 19/191 (9%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
+N F+ ++LD F ++ T+ LFGK+ +EN S+ I+ N+ R+++ LPR
Sbjct: 331 DNASSFKFYWLD-FAEV---DSTLLLFGKISTRENKLISAMIQIL-NLSRELFFLPR--- 382
Query: 267 LKTKEPVSIAQVYSEFDQIATQ-YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
E + + V+ E + + Y + + +++ KKYAF LPG+P SEYL+V +
Sbjct: 383 ----EGKTASDVHGEIIPLLMEKYGLENIRAKPEIKKYAFELPGIPHESEYLKVLLPYRT 438
Query: 326 P-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCK 379
P +PSDL GDTF HVFG T+ E+ ++++K+ GP WLE + S S C
Sbjct: 439 PKNRNVTIPSDLEGDTFHHVFGGNTNIFESFVVQKKVMGPCWLEINNGDFSALSNASHCD 498
Query: 380 YEVQCNQMEKI 390
EVQ +Q I
Sbjct: 499 IEVQVSQPSSI 509
Score = 43.1 bits (100), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 22/122 (18%)
Query: 125 ADENVYEEVSEKEYTERVLKRQE---DDWIDDDGGDGYVEDGREIFDDDIEDVPQKKEKH 181
D+ VY+ + E+E+ R +KRQE DD++ DD G GYV+ G + +DD D E+
Sbjct: 31 TDDKVYDLIDEEEF--RSMKRQELLRDDFVVDDDGLGYVDRGVDEWDDRNRDQNYSSEED 88
Query: 182 DK-----RKKNKNIQN--------PNAKDDSLPLATDHENKKVF----RMFFLDAFEDIY 224
DK K +K I+N A + A +N KV + F LD F+DI
Sbjct: 89 DKPRERAAKGSKKIKNDGKGVKSSSGASIGDIIAAQHTKNAKVLSKAPKKFSLDEFDDIL 148
Query: 225 KQ 226
++
Sbjct: 149 QE 150
>gi|207341723|gb|EDZ69700.1| YNL102Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1386
Score = 295 bits (756), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 257/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 686 IQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 745
Query: 483 GE--ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E A+ KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 746 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 802
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 803 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 860
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 861 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 920
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 921 DTGCDNYADAIKIGLGFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNG 980
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 981 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 1035
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
++ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 1036 ESNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 1078
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 19/187 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 269 TFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGK 319
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 320 TPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSR 377
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 378 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVS 436
Query: 384 CNQMEKI 390
++ + I
Sbjct: 437 VDKPQNI 443
>gi|367002710|ref|XP_003686089.1| hypothetical protein TPHA_0F01710 [Tetrapisispora phaffii CBS 4417]
gi|357524389|emb|CCE63655.1| hypothetical protein TPHA_0F01710 [Tetrapisispora phaffii CBS 4417]
Length = 1460
Score = 295 bits (755), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 260/412 (63%), Gaps = 28/412 (6%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK----E 478
+ +L L Q+TN+ GN S+TL G R+ RNE++LLH F Y++PDK+ K++ E
Sbjct: 754 IQLLSLTKQLTNLAGNAWSQTLGGTRAGRNEYILLHEFVRNGYIVPDKESNKSRARKNVE 813
Query: 479 GEETGEANKGKG----RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT 534
+ET N KKA Y GGLV EP+KG + +I++MDFNSLYPSIIQE+NICFT
Sbjct: 814 HQETEGNNSSMAPAVSSKKAKYQGGLVFEPEKGLHKNYILVMDFNSLYPSIIQEFNICFT 873
Query: 535 TIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM---KQPNLSSDLL 591
T+ + +DI + E +P + + G+LP ++ LV+ RR+VK LM P++ +
Sbjct: 874 TVDRNL---NDIEEIPE-VPSSEKEQGVLPRLLQNLVQRRREVKKLMINESDPHIRA--- 926
Query: 592 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVI 651
Q DIRQ+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N +V+
Sbjct: 927 -QCDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTGKGREILMNTRQLAESMNLKVV 985
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALS 711
YGDTDS+MI Y +G K N+ YK LE+DID V+K +LL KKKYAAL+
Sbjct: 986 YGDTDSVMIDTGSELYGQAIAVGLNFKKLVNERYKLLEIDIDNVFKKLLLHSKKKYAALN 1045
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
++ N + S E+KG+D+ RR++ L+ E +++ IL +D + LQ I++
Sbjct: 1046 VTIDKNKQEQTSLEVKGLDMRRREYCPLSKEVSTNILNLIL-----SDKDSETALQEIYD 1100
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+++ I++ ++N + + +I +L+K P GGK + Q+ L + GR
Sbjct: 1101 YLEDIKSKVENNEIRVDKYKINTKLSKDPSAYPGGKSMPAVQVALHMRKAGR 1152
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 19/187 (10%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
F+MF+LD F ++ + + +FG V + S S V + + R+++ LPR E
Sbjct: 338 FKMFWLD-FSEVDSK---LIIFGLVRALDG-SLLSAMVQINGLARELFFLPR-------E 385
Query: 272 PVSIAQVYSEFDQIATQYKILD-FKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
V +V E + + LD +S+ E KYAF +PG+P ++ YL+V P
Sbjct: 386 GVEPEEVQEEIVPLLLEKYGLDKIRSKPQEMKYAFEIPGIPHVTNYLKVLLPFDTPKSKR 445
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQC 384
+PSDL+ + FSHVFG T LE+ L++ KI GP WL+ + + S CK E+
Sbjct: 446 DIIPSDLNSEKFSHVFGGGTGILESFLVQNKIMGPCWLDIKNGDFETLQNTSHCKLEISV 505
Query: 385 NQMEKIR 391
+ I+
Sbjct: 506 SNPSDIK 512
>gi|259149259|emb|CAY82501.1| Pol1p [Saccharomyces cerevisiae EC1118]
Length = 1356
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 256/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 656 IQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 715
Query: 483 GE--ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E A+ KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 716 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 772
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 773 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 830
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 831 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 890
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 891 DTGCDNYADAIKIGLGFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNG 950
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 951 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 1005
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 1006 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 1048
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 19/187 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 239 TFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGK 289
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 290 TPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSR 347
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 348 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVS 406
Query: 384 CNQMEKI 390
++ + I
Sbjct: 407 VDKPQNI 413
>gi|414879514|tpg|DAA56645.1| TPA: hypothetical protein ZEAMMB73_505723 [Zea mays]
Length = 1528
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 261/428 (60%), Gaps = 72/428 (16%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLH+FH + ++ PDK + +NK
Sbjct: 791 LELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHARKFIAPDK-FARNK 849
Query: 477 -------KEGEETGEAN------------------KGKGRKKAAYSGGLVLEPKKGFYDK 511
K +TG AN + K RK +Y+GGLVLEPKKG YDK
Sbjct: 850 ELNSTKRKMNPDTGGANADDGAADPSVDDEVHNGDQSKARKGPSYAGGLVLEPKKGLYDK 909
Query: 512 FIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+++L+DFNSLYPSIIQE+NICFTT V D + LP +V TG+LP ++ LV
Sbjct: 910 YVLLLDFNSLYPSIIQEFNICFTT--VERSSDGSVPN----LPASKV-TGVLPELLRSLV 962
Query: 572 ESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
E RR VK+ +K +S L Q+DI+Q+ALKLTAN RF+A+PLA L+T
Sbjct: 963 ERRRMVKSWLKT---ASGLKKQQFDIQQQALKLTAN-----------RFYAKPLAELITL 1008
Query: 631 KGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKI-GNQIKSEC------- 681
+GREIL NT LV+ NLN EVIYGDTDS+MI ++D I G I+ C
Sbjct: 1009 QGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKAIAGKVIQEMCKLKKDGL 1068
Query: 682 --------NKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVR 733
NK Y+ LE+D+DG+YK MLLLKKKKYAA+ ++ +G + + E KG+D+VR
Sbjct: 1069 TKNASIQVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVR 1126
Query: 734 RDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEIT 793
RDWS L+ + G F + QIL + + DD +++IH + +++ + +G + L IT
Sbjct: 1127 RDWSLLSKDIGDFCLKQIL-----SGGTCDDVVESIHSSLVQVQEQMRSGQIELEKYVIT 1181
Query: 794 KQLTKAPE 801
K LTKAPE
Sbjct: 1182 KSLTKAPE 1189
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 26/196 (13%)
Query: 211 VFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 269
+ LDA+E+ + GTVYLFGKV V + SCCVIV+NI R IY +P
Sbjct: 341 ALPFYILDAYEEPFGANSGTVYLFGKVEVGKQ--FHSCCVIVKNIQRCIYAIPNRSVFPM 398
Query: 270 -------KEPVS--IAQVYSEFDQIATQYK-----------ILDFKSRKIEKKYAFNLPG 309
+ P + + + + ++A+ K + +F +++ YAF
Sbjct: 399 DSISGIERNPTADLLPSLRATLHELASGLKSEIADKLSDLNVSNFIMTPVKRNYAFERTD 458
Query: 310 VPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
+P+ +Y L++ Y K PALP+DL G+ F + GT S LE L++RK+KGPSWL +
Sbjct: 459 LPNGEQYVLKINYPYKDPALPADLRGEHFHALLGTNNSALELFLIKRKVKGPSWLSVSKF 518
Query: 369 EKFPS--RISWCKYEV 382
PS R+SWCK+EV
Sbjct: 519 VTRPSTQRVSWCKFEV 534
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 20/141 (14%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHK--YEFTADENVYEEVSEKEYTERVLKRQED--DWIDD 153
+ + + A Q+L+ ++ ++ + D +Y+ V E+EY V +R+++ ++I D
Sbjct: 21 EASGRAAVLQQLRAVRSGQIRASDAIQVKVDAPIYDTVPEEEYNVLVARRRKEAGEFIID 80
Query: 154 DGGDGYVEDGREIFDD--------------DIEDVPQKKEKHDKRKKNKNIQNPNAKDDS 199
D G GYVEDGRE +D + ED +K K + + K +AK S
Sbjct: 81 DDGLGYVEDGRE--EDWSHRALPSSSDEGSEGEDGAPRKRKQTRPPQAKRQPQQSAKVAS 138
Query: 200 LPLATDHENKKVFRMFFLDAF 220
L A +++ MF F
Sbjct: 139 LSAAAAKTGQQISSMFTSSVF 159
>gi|444315684|ref|XP_004178499.1| hypothetical protein TBLA_0B01370 [Tetrapisispora blattae CBS 6284]
gi|387511539|emb|CCH58980.1| hypothetical protein TBLA_0B01370 [Tetrapisispora blattae CBS 6284]
Length = 1486
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 175/412 (42%), Positives = 256/412 (62%), Gaps = 24/412 (5%)
Query: 399 LIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLH 458
L+ I E I ++L S +I +L L Q+T + GN S+TL G R+ RNE++LLH
Sbjct: 765 LMAIQENITNSILASEVSFRIQ----LLSLTKQLTTLAGNAWSQTLGGTRAGRNEYILLH 820
Query: 459 AFHEKSYVLPDKQYGKNKKE-----GEETGEAN-KGKGRKKAAYSGGLVLEPKKGFYDKF 512
F +Y+LPDK+ + K + + G++N KKA Y GGLV EP+KG + +
Sbjct: 821 EFSRNNYILPDKESNRQKAQRRQQIADTEGDSNLPPVSNKKAKYQGGLVFEPEKGLHKNY 880
Query: 513 IILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVE 572
I++MDFNSLYPSIIQE+NICFTT+ + +DI L E +P G+LP + LV+
Sbjct: 881 ILVMDFNSLYPSIIQEFNICFTTVDRNL---NDIDELPE-VPASNKAQGVLPRLLATLVQ 936
Query: 573 SRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
RR+VK +M +DL +Q DIRQ+ALKLTANSMYGCLG+ NSRF+A+PLA L T
Sbjct: 937 RRREVKKVMAS---ETDLHKKVQCDIRQQALKLTANSMYGCLGYNNSRFYAKPLAMLTTN 993
Query: 631 KGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
KGREIL+NT+ L E+L V+YGDTDS+MI ++Y++ KIG K N+ Y+ LE+
Sbjct: 994 KGREILMNTRQLAESLELAVVYGDTDSVMIDTGCDNYNNAIKIGQDFKKLVNERYRLLEI 1053
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
DID V+K +LL KKKYAAL++ G + E+KG+D+ RR++ L+ E V++
Sbjct: 1054 DIDNVFKKLLLHAKKKYAALNVIIDKQGNESTTLEVKGLDMKRREYCPLSKEVSIHVLNT 1113
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+L +D + L I+E++++ R +++N + + +I +L+K P
Sbjct: 1114 VL-----SDKDSETALSEIYEYLERTRNNVENNDIRIDKYKINTKLSKDPNS 1160
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 17/185 (9%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
F MF++D E ++ LFGKV + + S + + N++R+++ LPR KT E
Sbjct: 369 FHMFWMDFCE----VDNSLILFGKVKTHDG-TLVSAMLQINNLNRELFFLPREG--KTPE 421
Query: 272 PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP----- 326
V + D+ Y + +++ KKY F +P +P + YL+V K P
Sbjct: 422 DVHEEIIPLLMDK----YGLDTIRAKPERKKYCFEIPDIPTETYYLKVLLPYKPPKSSND 477
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCN 385
+P++LS DTF HVFG T+ E+ +++ K+ GP WL+ + S C+ E+ N
Sbjct: 478 LIPAELSSDTFYHVFGGNTNIFESFVIQNKVMGPCWLKVKNGDFNALQNASHCQLEIVVN 537
Query: 386 QMEKI 390
+ I
Sbjct: 538 NPKDI 542
Score = 43.5 bits (101), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQE---DDWIDDDG 155
K K Q L++ K +H + D +Y+E+ E EY R KRQE DD++ DD
Sbjct: 7 KLEKLKKLQALRNAKNSQNQHSNDDINDNKIYDEIDEIEYRNR--KRQELLHDDFVIDDD 64
Query: 156 GDGYVEDGRE 165
G GYV+ G E
Sbjct: 65 GKGYVDRGIE 74
>gi|414879513|tpg|DAA56644.1| TPA: hypothetical protein ZEAMMB73_505723 [Zea mays]
Length = 1526
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 188/428 (43%), Positives = 261/428 (60%), Gaps = 72/428 (16%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLH+FH + ++ PDK + +NK
Sbjct: 791 LELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHARKFIAPDK-FARNK 849
Query: 477 -------KEGEETGEAN------------------KGKGRKKAAYSGGLVLEPKKGFYDK 511
K +TG AN + K RK +Y+GGLVLEPKKG YDK
Sbjct: 850 ELNSTKRKMNPDTGGANADDGAADPSVDDEVHNGDQSKARKGPSYAGGLVLEPKKGLYDK 909
Query: 512 FIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+++L+DFNSLYPSIIQE+NICFTT V D + LP +V TG+LP ++ LV
Sbjct: 910 YVLLLDFNSLYPSIIQEFNICFTT--VERSSDGSVPN----LPASKV-TGVLPELLRSLV 962
Query: 572 ESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
E RR VK+ +K +S L Q+DI+Q+ALKLTAN RF+A+PLA L+T
Sbjct: 963 ERRRMVKSWLKT---ASGLKKQQFDIQQQALKLTAN-----------RFYAKPLAELITL 1008
Query: 631 KGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKI-GNQIKSEC------- 681
+GREIL NT LV+ NLN EVIYGDTDS+MI ++D I G I+ C
Sbjct: 1009 QGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKAIAGKVIQEMCKLKKDGL 1068
Query: 682 --------NKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVR 733
NK Y+ LE+D+DG+YK MLLLKKKKYAA+ ++ +G + + E KG+D+VR
Sbjct: 1069 TKNASIQVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVR 1126
Query: 734 RDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEIT 793
RDWS L+ + G F + QIL + + DD +++IH + +++ + +G + L IT
Sbjct: 1127 RDWSLLSKDIGDFCLKQIL-----SGGTCDDVVESIHSSLVQVQEQMRSGQIELEKYVIT 1181
Query: 794 KQLTKAPE 801
K LTKAPE
Sbjct: 1182 KSLTKAPE 1189
Score = 113 bits (283), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 26/196 (13%)
Query: 211 VFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 269
+ LDA+E+ + GTVYLFGKV V + SCCVIV+NI R IY +P
Sbjct: 341 ALPFYILDAYEEPFGANSGTVYLFGKVEVGKQ--FHSCCVIVKNIQRCIYAIPNRSVFPM 398
Query: 270 -------KEPVS--IAQVYSEFDQIATQYK-----------ILDFKSRKIEKKYAFNLPG 309
+ P + + + + ++A+ K + +F +++ YAF
Sbjct: 399 DSISGIERNPTADLLPSLRATLHELASGLKSEIADKLSDLNVSNFIMTPVKRNYAFERTD 458
Query: 310 VPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
+P+ +Y L++ Y K PALP+DL G+ F + GT S LE L++RK+KGPSWL +
Sbjct: 459 LPNGEQYVLKINYPYKDPALPADLRGEHFHALLGTNNSALELFLIKRKVKGPSWLSVSKF 518
Query: 369 EKFPS--RISWCKYEV 382
PS R+SWCK+EV
Sbjct: 519 VTRPSTQRVSWCKFEV 534
Score = 41.2 bits (95), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 20/141 (14%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHK--YEFTADENVYEEVSEKEYTERVLKRQED--DWIDD 153
+ + + A Q+L+ ++ ++ + D +Y+ V E+EY V +R+++ ++I D
Sbjct: 21 EASGRAAVLQQLRAVRSGQIRASDAIQVKVDAPIYDTVPEEEYNVLVARRRKEAGEFIID 80
Query: 154 DGGDGYVEDGREIFDD--------------DIEDVPQKKEKHDKRKKNKNIQNPNAKDDS 199
D G GYVEDGRE +D + ED +K K + + K +AK S
Sbjct: 81 DDGLGYVEDGRE--EDWSHRALPSSSDEGSEGEDGAPRKRKQTRPPQAKRQPQQSAKVAS 138
Query: 200 LPLATDHENKKVFRMFFLDAF 220
L A +++ MF F
Sbjct: 139 LSAAAAKTGQQISSMFTSSVF 159
>gi|71064097|gb|AAZ22505.1| Pol1p [Saccharomyces cerevisiae]
Length = 1302
Score = 294 bits (752), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 256/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 602 IQLLSLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 661
Query: 483 GE--ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E A+ KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 662 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 718
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 719 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 776
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 777 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 836
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 837 DTGCDNYADAIKIGLGFKKLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNE 896
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 897 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 951
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 952 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 994
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 19/187 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 185 TFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGK 235
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 236 TPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSR 293
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 294 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVS 352
Query: 384 CNQMEKI 390
++ + I
Sbjct: 353 VDKPQNI 359
>gi|453056078|pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha
gi|453056079|pdb|4FXD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna
gi|453056080|pdb|4FXD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna
Length = 910
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 256/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 420 IQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 479
Query: 483 GE--ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E A+ KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 480 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 536
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 537 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 594
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 595 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 654
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 655 DTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNG 714
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 715 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 769
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 770 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 812
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 101/186 (54%), Gaps = 19/186 (10%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 4 FQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGKT 54
Query: 272 PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP----- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 55 PTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSRD 112
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQC 384
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 113 TIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVSV 171
Query: 385 NQMEKI 390
++ + I
Sbjct: 172 DKPQNI 177
>gi|83774919|dbj|BAE65042.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1453
Score = 292 bits (747), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 164/404 (40%), Positives = 250/404 (61%), Gaps = 16/404 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ F+ + ++ ++ L +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 743 GLMNFVNHCDTDTYFVAALVLRLQMLPLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 802
Query: 461 HEKSYVLPDKQYGKNKKEG---EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
H Y+ PDK K +K ++ + + +KK Y GGLV EP+KG YD+F+++MD
Sbjct: 803 HRNKYICPDKYSAKLQKAEVKLQDGDDDDATDKKKKDKYKGGLVFEPEKGLYDRFVLVMD 862
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ + + + E Q GILP I LV RR+V
Sbjct: 863 FNSLYPSIIQEYNICFTTVE----RTATVRVFAEKSCGKQ---GILPRLIATLVGRRREV 915
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 916 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 975
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
+TK L E+ VIYGDTDS+MI+ N++ K+G + K N+ Y+ LE+DID +++
Sbjct: 976 STKELAESKQLRVIYGDTDSVMINTNMDTLSDALKVGEEFKKSVNERYRLLEIDIDNIFR 1035
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+LL KKKYAA++++++ +GK + E+KG+D+ RR++ L+ E + +++++L +
Sbjct: 1036 RLLLHAKKKYAAINMTEM-DGKYVDKLEVKGLDMKRREYCALSKEVSQRLLNEVLSGEDQ 1094
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ L +H++++ + + VP+ I +L+K PE
Sbjct: 1095 -----EIVLNRVHDYLRDLAGKMREFAVPVQKYVIYTKLSKRPE 1133
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/190 (41%), Positives = 110/190 (57%), Gaps = 11/190 (5%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEH 266
E+ RMF++D F ++ G++ LFGKV K+ +++S V V NI RK+Y LPR
Sbjct: 338 EDDGSLRMFWID-FTEVN---GSLCLFGKVRNKQTGNYASAFVKVDNILRKLYFLPREYR 393
Query: 267 LK----TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
K T E V + VY+E D + ++ K+ K + +KYAF +PGVP +EYL++ Y
Sbjct: 394 HKHGRDTDEEVDMEDVYNEVDGMMSRLKVGMHKIKPCTRKYAFEMPGVPKETEYLKLLYP 453
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKY 380
PALP + G+TFSHVFGT TS E +L + I GP WL F E F + SWCK+
Sbjct: 454 YDKPALPMETKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLRF-EGADFSAVNNASWCKF 512
Query: 381 EVQCNQMEKI 390
E Q ++ I
Sbjct: 513 ECQVSKPALI 522
Score = 47.0 bits (110), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYV 160
A +L+ L+ G K YE +++YEEV ++ Y + + R EDD++ DD G+GY
Sbjct: 6 AKLAELRALRASGKKRISTYEVEEQDDIYEEVDDEGYKKIIRNRLDEDDFVVDDNGEGYA 65
Query: 161 EDGREIFDDDIED 173
+DGRE + D D
Sbjct: 66 DDGREDWTVDYHD 78
>gi|453056085|pdb|4FYD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna And Dgtp
gi|453056086|pdb|4FYD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
Dna/rna And Dgtp
Length = 910
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 256/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 420 IQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 479
Query: 483 GE--ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E A+ KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 480 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 536
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 537 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 594
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDT+S+MI
Sbjct: 595 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTNSVMI 654
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 655 DTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNG 714
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 715 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 769
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 770 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 812
Score = 94.0 bits (232), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 100/185 (54%), Gaps = 17/185 (9%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 4 FQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGKT 54
Query: 272 PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP----- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 55 PTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSRD 112
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCN 385
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ + S C EV +
Sbjct: 113 TIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGADFNSIAAASHCAVEVSVD 172
Query: 386 QMEKI 390
+ + I
Sbjct: 173 KPQNI 177
>gi|328866535|gb|EGG14919.1| DNA polymerase alpha catalytic subunit [Dictyostelium fasciculatum]
Length = 763
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 247/403 (61%), Gaps = 38/403 (9%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
++PL Q+TN+ GN+ +++L G R+ER E+LLLH F++K Y+LPDKQ + +
Sbjct: 2 LIPLTKQLTNLAGNLWNKSLTGNRAERIEYLLLHNFYQKKYILPDKQSRR-----DSLAA 56
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQD- 543
+NK R KAA+SGGLVLEPK+ +YDK+++L+DFNSLYPSIIQEYN+CFTTIP R+ +D
Sbjct: 57 SNK---RAKAAFSGGLVLEPKRAYYDKYVVLLDFNSLYPSIIQEYNVCFTTIP-RIKKDL 112
Query: 544 ----------------SDITTL------CEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
+ +L P + V GILP + LV R+ V+ M
Sbjct: 113 GDQSKFAGVDEVDKPATSTRSLGSKGWELAVPPSNTVAKGILPQVLNYLVNRRKDVRKKM 172
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
+ + + Q DI+Q+A+KL ANSMYGCLGF +SRF+A PLA LVT KGRE L +
Sbjct: 173 EVEK-DATIKQQLDIKQQAIKLVANSMYGCLGFTSSRFYALPLAELVTRKGRENLEKSAD 231
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ--LELDIDGVYKYM 699
+ E +N+ VIYGDTDS+M+ V+ Y+ IG QIK++ N +K +E+ +DGV+K +
Sbjct: 232 ITERMNHSVIYGDTDSIMVYTGVSTYNEAQDIGRQIKTKINNQFKNSVMEIGLDGVFKRL 291
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
LLLKKKKYAAL +KLS+ + KG+D+VRRDW L G ++ +L +
Sbjct: 292 LLLKKKKYAALIETKLSDNTFKTVIQNKGLDIVRRDWCDLTKTIGNKILEMLLSGEEKES 351
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
L L+ I +++IR D++ G V + ITK L+ PE
Sbjct: 352 SKL---LEEIKSFLEQIRKDINEGLVSIDQFIITKTLSANPEA 391
>gi|340504378|gb|EGR30826.1| hypothetical protein IMG5_122980 [Ichthyophthirius multifiliis]
Length = 1254
Score = 291 bits (744), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 183/441 (41%), Positives = 260/441 (58%), Gaps = 60/441 (13%)
Query: 409 TMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLP 468
T L + Y +KIM L ++ L Q+T +CGN +L R+ERNE LLLH F+E +YV P
Sbjct: 532 TYLDNEYALKIMYHLQIIQLTKQLTIICGNQWIGSLQNQRAERNEMLLLHKFYELNYVYP 591
Query: 469 DK------QYGKNK--KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
D QY K K E TG + +KK + GG V EP+KG Y+++I+L+DFNS
Sbjct: 592 DNFKNLNFQYKKKMQLKLSENTGSQQQQGKQKKQKFKGGQVFEPQKGLYNEYIVLLDFNS 651
Query: 521 LYPSIIQEYNICFTTIPVRML---QDSDITT-----LCEYLPEH---------------- 556
LYPSIIQE+N+CFTT + L Q I L E + ++
Sbjct: 652 LYPSIIQEFNVCFTTATRKSLSLEQQMQIFIKNKKDLNEQIIQNNQEEEEQYNDIQQDQQ 711
Query: 557 ------QVD----TGILPSEIKKLVESRRQVKALMKQP--NLSSDLLMQYDIRQKALKLT 604
Q++ +LP ++ LV+ R++VK +K L + L DI+QKA KL
Sbjct: 712 NDDQIAQIEKVKYIAVLPGILRDLVDQRKKVKNQLKNAKDQLEKETL---DIKQKAFKLV 768
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNV 664
ANS+YGCLGF +SRF+A P+AA +T+KGRE+L ++K +VE++ Y VIYGDTDSLMI N
Sbjct: 769 ANSIYGCLGFSSSRFYAMPIAAFITSKGREVLFSSKKIVEDMGYNVIYGDTDSLMIRPNT 828
Query: 665 NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS------NG 718
D KI +IK E NK YK+L+LDIDGV+K MLL+KKKKYA L + N
Sbjct: 829 QDLCEAIKIALKIKIEANKQYKKLQLDIDGVFKNMLLIKKKKYATLKVCNWEEAYQNKNI 888
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ-NIHEHMKKIR 777
+ I +E+KG+D+VRRDWSQ++ +AG V+ IL+ +S +++Q NI ++ ++
Sbjct: 889 QEITVKELKGIDIVRRDWSQISRDAGNKVLDIILNSKS------SEQVQENIITYLTELN 942
Query: 778 TDLDNGFVPLTLLEITKQLTK 798
++D + + ITK+LTK
Sbjct: 943 KEIDEKRIKPSDYYITKKLTK 963
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 85/150 (56%), Gaps = 2/150 (1%)
Query: 227 PGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIA 286
PG +Y FGKV + N + SC + ++NI R YLLP SE + T+E + +V+ F
Sbjct: 141 PGKIYAFGKVKDPQLNKYHSCTIEIENIIRYYYLLPSSEQI-TEEEIK-NEVHQIFKNAQ 198
Query: 287 TQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTS 346
K +DF + ++K YAF LP ++ ++ S + +L D+ G TF++ G+ S
Sbjct: 199 KMSKKVDFVGQFVQKNYAFELPIPKGNQKWYQIMTSYEFESLDPDVKGKTFNYCIGSTYS 258
Query: 347 FLENLLLERKIKGPSWLEFPEAEKFPSRIS 376
LE+ L++++IKGP W++ + P+ IS
Sbjct: 259 SLESFLIQKRIKGPCWVKMRNIKNTPNLIS 288
>gi|6015012|sp|Q27152.1|DPOLA_OXYTR RecName: Full=DNA polymerase alpha catalytic subunit
gi|1401224|gb|AAB57771.1| DNA polymerase alpha catalytic subunit [Oxytricha trifallax]
Length = 1513
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 187/416 (44%), Positives = 256/416 (61%), Gaps = 39/416 (9%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--YGK 474
I++M L ++PL +Q+TN+ GN+ R+L R+ERNE LLLH F +K ++LPDK+ + K
Sbjct: 779 IQLMNHLAIIPLTLQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPDKKAPFAK 838
Query: 475 NKK------EGEE---TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSI 525
+ K E EE KG RKKAAY+GGLV+EPK GFYD I+L+DFNSLYPSI
Sbjct: 839 DFKRNMFADEFEELKSGKGPKKGGKRKKAAYAGGLVIEPKAGFYDNIILLLDFNSLYPSI 898
Query: 526 IQEYNICFTTI---PVRMLQDSDITTLCEY---------------LPEHQVDT--GILPS 565
IQEYN+CFTT+ P + S++ + + LP+ V+ +LP+
Sbjct: 899 IQEYNLCFTTVNRRPTKNFDGSEVKSQFKAAGTDANEGNEVEEADLPDKNVNVKDAVLPN 958
Query: 566 EIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLA 625
++ LV+ R+ VK MK + L Q +IRQKA+KLTANSMYGCLGF +SRF AQ +A
Sbjct: 959 VLRDLVQKRKAVKEKMKNEK-DAVKLSQLEIRQKAIKLTANSMYGCLGFGSSRFHAQAIA 1017
Query: 626 ALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNK 683
AL+T GR+ LL TK + EN L + V+YGDTDS+MI+ N ++G + + +
Sbjct: 1018 ALITKTGRDTLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSLEMGKRPQGLKLIA 1077
Query: 684 LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEA 743
LYK LE++IDGV+K +LLLKKKKYAAL QE+KG+D+VRRDW L+
Sbjct: 1078 LYKCLEIEIDGVFKSLLLLKKKKYAALKYEGFGTPDAKVVQEVKGLDMVRRDWCPLSKNV 1137
Query: 744 GKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
G FV++QIL + D L N++E++ I + N + L ITKQLTKA
Sbjct: 1138 GNFVLNQILSGKQREDVVL-----NLNEYLSDIGEKMKNNGITLDQFIITKQLTKA 1188
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 25/200 (12%)
Query: 194 NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGT-VYLFGKVFVKENNSHSSCCVIVQ 252
N ++ LPL +EN +++DA E+ GT +Y+FGK++ + SC + V
Sbjct: 342 NTQEFPLPL---NENG-TLSFYWIDAHEE---NNGTDLYIFGKIYQPQMRQFVSCSMKVN 394
Query: 253 NIDRKIYLLP------RSEHLKTKEPVSIAQVYSEFDQIATQ--YKILDFKSRKIEKKYA 304
+ R++Y LP R +E + V E D I + +I ++ + + +KYA
Sbjct: 395 GMQRELYALPKMRGKARGALTVEEEKQQVRAVMMELDDIRKKRFPQISKWRCKPVNRKYA 454
Query: 305 FNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE 364
F +P ++L+++Y + P LPS + G+TF +FG+ S LE +L+RKI+GP W+
Sbjct: 455 FEMPIQHGEHQFLKIKYDSTMPPLPSTIQGNTFECIFGSTQSMLELFILKRKIRGPCWMT 514
Query: 365 FPEAEKFPSRI-----SWCK 379
K P+++ +WC+
Sbjct: 515 I----KNPTKVTDFKKTWCR 530
>gi|71841812|gb|AAZ43189.1| DNA polymerase alpha [Eschaneustyla sp. WJC-2005]
Length = 1548
Score = 287 bits (735), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 191/442 (43%), Positives = 264/442 (59%), Gaps = 35/442 (7%)
Query: 385 NQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTL 444
NQ + R + +++ I+ T + + +M L+++PL Q+TN+ GN+ R+L
Sbjct: 777 NQYDDERLPHFYLTPAALMQLIEHTEKDAYFTFLLMNHLSIIPLTKQLTNIAGNLWYRSL 836
Query: 445 MGGRSERNEFLLLHAFHEKSYVLPDKQY--GKNKKEGEETGE--------ANK------G 488
R+ERNE LLLH F++K Y+ PDK+ GK K+ E+ E +NK
Sbjct: 837 QNARAERNEMLLLHEFYQKKYICPDKKVLSGKELKQAEQEQEEAINIIQSSNKEEKSGAN 896
Query: 489 KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSD 545
+KKA Y GGLV+EPK GFYD I+L+DFNSLYPSIIQEYN+CFTT+ P + S+
Sbjct: 897 NKKKKAKYQGGLVIEPKAGFYDNIILLLDFNSLYPSIIQEYNLCFTTVNRKPTKNFDGSE 956
Query: 546 ITT--LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKL 603
I E Q ILP +K LV RRQVK LMK+ S L Q +IRQKA+KL
Sbjct: 957 IEIDEDVEVPSGKQNQEAILPKILKDLVLRRRQVKELMKKEK-DSVKLQQLEIRQKAIKL 1015
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISC 662
TANSMYGCLGF +SRF A+ +AAL+T KG + LL TK + E+ L + V+YGDTDS+MI+
Sbjct: 1016 TANSMYGCLGFSSSRFHAKSIAALITRKGGDTLLRTKDIAESKLQFNVVYGDTDSIMINT 1075
Query: 663 NVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG---- 718
N + G ++K+E N LYK LE++IDGV+K +LLLKKKKYAAL + +
Sbjct: 1076 GTNQLNDALNTGRKLKAEVNTLYKCLEIEIDGVFKCLLLLKKKKYAALKVENFLSPNENE 1135
Query: 719 -KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 777
K IC E+KG+D+VRR+W L+ + FV+ QIL + D L ++E++ ++
Sbjct: 1136 RKTIC--EMKGLDMVRREWCALSKKVSGFVLDQILSGKQREDVVLQ-----LNEYLSEVG 1188
Query: 778 TDLDNGFVPLTLLEITKQLTKA 799
+ L ITKQL +A
Sbjct: 1189 RKMKESSYNLGEFIITKQLNRA 1210
Score = 89.4 bits (220), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 17/194 (8%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LP D +++DA E+ Q VYLFGKV+ E N SC + ++ + R +Y
Sbjct: 375 LPFNQD----GTLSFYWIDAHEENNGQ--EVYLFGKVYQPEVNKFVSCALQIKGMKRIVY 428
Query: 260 LLPRS----EHLKTKEPVSI--AQVYSEF-DQIATQY-KILDFKSRKIEKKYAFNLPGVP 311
+LP++ +T+E ++ +Y+E D I ++ +I ++ + + + YAF +P
Sbjct: 429 ILPKAGKNGRGTETQEELAKNGTDIYNEIKDLINKRFPQIKNWGIKSVYRNYAFEMPLQH 488
Query: 312 DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEK- 370
++++++ A+ LP DL G F FGT S LE LL+R I GP WL A+K
Sbjct: 489 GEHYFMKMQFPAEFGTLPRDLKGKXFDCTFGTNQSMLELFLLKRNIMGPCWLTITGAQKV 548
Query: 371 --FPSRISWCKYEV 382
+ +WC+ E+
Sbjct: 549 ENISQKKTWCQQEI 562
Score = 40.4 bits (93), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 3/73 (4%)
Query: 104 AAFQKLKDLKGQGVK--HKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVE 161
+ +KL++ + G K +Y+ + ++ E+ ++EY + +R+ DD+I +D G GYV+
Sbjct: 64 SGLEKLREAREGGKKRTDQYQIQEERRIFAEIDDEEYEKLQKERRNDDFIVNDDGLGYVD 123
Query: 162 DGREIFD-DDIED 173
G EI++ DDI+D
Sbjct: 124 KGGEIWEVDDIDD 136
>gi|66812196|ref|XP_640277.1| DNA polymerase alpha catalytic subunit [Dictyostelium discoideum AX4]
gi|74855136|sp|Q54SV8.1|DPOLA_DICDI RecName: Full=DNA polymerase alpha catalytic subunit
gi|60468293|gb|EAL66301.1| DNA polymerase alpha catalytic subunit [Dictyostelium discoideum AX4]
Length = 1509
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 174/391 (44%), Positives = 247/391 (63%), Gaps = 16/391 (4%)
Query: 415 YIIKIMC-ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYG 473
YII ++ +L V PL Q+TN+ GN ++L R+ER E+LLLH FHEK Y+LPDK Y
Sbjct: 810 YIIFLLIFKLLVFPLTKQLTNLAGNQWDKSLKSNRAERIEYLLLHNFHEKKYLLPDKIYQ 869
Query: 474 KNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICF 533
K+ G G +K AAYSGGLVL+PK FYD++++L+DFNSLYPSIIQEYN+CF
Sbjct: 870 KSSSSGGGGGAKDKDN---HAAYSGGLVLDPKIDFYDRYVVLLDFNSLYPSIIQEYNVCF 926
Query: 534 TTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ 593
TTI ++ D P ++ GILP + LV RR++K M+Q + + Q
Sbjct: 927 TTI--NRVKRDDGKWEEAMPPPSSIEKGILPKVLHGLVSKRREIKKRMEQEK-NKIIKAQ 983
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG 653
YDI+Q+A+KL ANSMYGCLGF +SRF+A PLA LVT KGRE L S+V + Y+VIYG
Sbjct: 984 YDIQQQAVKLIANSMYGCLGFSHSRFYALPLAELVTRKGRENLQKGASIVNKMCYDVIYG 1043
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK--QLELDIDGVYKYMLLLKKKKYAALS 711
DTDSLMI V ++ IG +I+ + N Y+ +E+ +DG++K +LL KKKKYA L
Sbjct: 1044 DTDSLMIYTGVGTFNEAETIGKEIQKKINDQYRGSVMEIGLDGIFKRLLLFKKKKYACLK 1103
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL-DEQSYTDYSLDDRLQNIH 770
++ + C +E KG+D+VRRD+ L + G++V++ IL E+ +SL I
Sbjct: 1104 EFRIDSTTTKCERENKGIDIVRRDYCDLTKDIGQWVLNLILGGEEKIALFSL------IK 1157
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
E+++ ++ + + + + ITK L+K PE
Sbjct: 1158 EYLESVQQQIKDNTLAVEKFIITKTLSKQPE 1188
Score = 73.9 bits (180), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 14/161 (8%)
Query: 244 HSSCCVIVQNIDRKIYLLPRSEHL-----KTKEPVSIAQVYSEFDQIATQYKILDFKSRK 298
++SCC+I++ ++R ++ LPR L T V+ + +E Q+ + KI D+K +K
Sbjct: 435 YASCCIIIEKMERNVFFLPRDYKLDQDGESTTIQVTDTMIEAELKQLVDRSKIKDYKLKK 494
Query: 299 IEKKYAFNLPGVPDLS------EYL-EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENL 351
+++ AF+ VP + Y+ ++ Y + P+D+ G TF +G +S +E
Sbjct: 495 VKRTSAFDY-SVPHKNGPVGEQHYVWKLSYPSNQMVFPNDIKGSTFRCAYGITSSPVELF 553
Query: 352 LLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQMEKIR 391
L++RKI GP+WL F + S+ +YE + I+
Sbjct: 554 LIKRKIMGPTWLTVSGITLNFDQKKSFARYEATVKSFKSIK 594
>gi|298705331|emb|CBJ49021.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1612
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 170/344 (49%), Positives = 223/344 (64%), Gaps = 39/344 (11%)
Query: 485 ANKGKG--RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ 542
AN G G RKKAAY+GGLVLEPKKG YD++I+L+DFNSLYPS+IQEYN+CFTT+
Sbjct: 945 ANSGGGARRKKAAYAGGLVLEPKKGLYDEYILLLDFNSLYPSLIQEYNLCFTTM---NWA 1001
Query: 543 DSDITTLCEY---------------------LPEHQVDTGILPSEIKKLVESRRQVKALM 581
D++T + LP +D G+LP I+ LVE R VK ++
Sbjct: 1002 ACDMSTPAQGGEDDMDEDDGAAASAGPKLPDLPAEGMDIGVLPRVIRTLVERRSVVKKML 1061
Query: 582 KQ---PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
K+ P+ +L DIRQKALKLTANSMYGCLGF SRF+A+P+AALVTA+GRE L
Sbjct: 1062 KKEKDPSRKQEL----DIRQKALKLTANSMYGCLGFSFSRFYAKPIAALVTAQGRESLQR 1117
Query: 639 TKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
T L EN L EVIYGDTDS+MI+ + D V IGNQ+K E NKLYK LELD+DGV+K
Sbjct: 1118 TVDLSENQLGLEVIYGDTDSVMINTHSTDLKQVKDIGNQVKREVNKLYKSLELDLDGVFK 1177
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
MLLLKKKKYAAL + + +G + +E+KG+D+VRR+W L+ + GKFV+ ++L ++
Sbjct: 1178 SMLLLKKKKYAALVVVEHPDGSITYDKEMKGLDLVRREWCTLSKDTGKFVLDRVLSGEAR 1237
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + IH+H++ + + G V + ITK L KAP
Sbjct: 1238 -----ETVVTGIHDHLEALAASMRAGEVEVPRYVITKGLNKAPH 1276
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 103/228 (45%), Gaps = 50/228 (21%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFV-----------------KENNSHSSCCV 249
E + RMF+LDA E Q GT+YL GKV V + S CV
Sbjct: 449 ETGEFMRMFWLDATE----QNGTIYLIGKVAVPSPSSGSASASPQGDSGAAGTTFLSACV 504
Query: 250 IVQNIDRKIYLLPR---------------SEHLKTKEPVSIAQVYSEFDQIATQYKIL-- 292
V +I+R++ +LPR + + I VY E + I
Sbjct: 505 AVHSIEREVLVLPRLVEKDGEYSDGDEDAGGGGGSAKRADIGAVYQEMASVLVPRVIKRN 564
Query: 293 ----DFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPALPSDL---SGDTFSHVFGTK 344
F+ + + +KYAF VP + ++YL+++Y A PALP D+ G TF +FG +
Sbjct: 565 AKGEQFRCKPVMRKYAFGDLSVPREETQYLKIKYPAGYPALPEDVCESGGKTFQAIFGAR 624
Query: 345 TSFLENLLLERKIKGPSWLEF--PEAEKFPSRISWCKYEVQCNQMEKI 390
T +E+ L++RK+ GP W+ P+ P +SWCK EV + I
Sbjct: 625 TPLIESFLIKRKLMGPCWITVRNPKVNNAP--VSWCKVEVAAQSPKSI 670
>gi|323449691|gb|EGB05577.1| hypothetical protein AURANDRAFT_30667 [Aureococcus anophagefferens]
Length = 1117
Score = 281 bits (718), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 175/374 (46%), Positives = 242/374 (64%), Gaps = 28/374 (7%)
Query: 394 QGLIYLIGIV-EFIKFTMLHSS----YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGR 448
Q + +L+G E + + HS+ + ++M L ++PL+ Q+T + GN+L+RTL G R
Sbjct: 385 QDVAHLLGSTKEHVAGLLRHSAEDCRLVERLMLRLQIMPLSKQLTAISGNLLARTLKGHR 444
Query: 449 SERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK------GRKKAAYSGGLVL 502
+ER E+LLLH FH Y+ P+KQ + ++ ++ KGK GR KAAY GGLVL
Sbjct: 445 AERIEYLLLHEFHRIKYIAPEKQ--RYDEDSDDDSNGKKGKKRDRHAGRAKAAYQGGLVL 502
Query: 503 EPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGI 562
EPKKGFYD ++L+DF SLYPSIIQEY+ICFTTI D + LPE D
Sbjct: 503 EPKKGFYDSHVLLLDFASLYPSIIQEYDICFTTI--------DWSKYA--LPEKLEDAPA 552
Query: 563 LP--SEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFF 620
+ +K L++ RR+VK L+K+ + L Y+IRQ ALKLTANSMYGCLGF +SRFF
Sbjct: 553 AKRRAVLKALIDRRREVKQLIKKEK-NPKTLETYNIRQMALKLTANSMYGCLGFSHSRFF 611
Query: 621 AQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS 679
A+PLAALVT+ GR+ L T + E L EVIYGDTDS+MI+ +D V +GN++K
Sbjct: 612 AKPLAALVTSLGRDTLQATADVAEKELGLEVIYGDTDSIMINTRTDDLAVVKDLGNKVKK 671
Query: 680 ECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK-LSNGKMICSQEIKGVDVVRRDWSQ 738
NK Y+ LEL++DG++K MLLLKKKKYAAL +++ G++ +E KG+D+VRRDW
Sbjct: 672 AVNKRYRLLELELDGIFKAMLLLKKKKYAALVVNEDPKTGQLSYKKETKGLDLVRRDWCP 731
Query: 739 LASEAGKFVISQIL 752
L+ G ++ +L
Sbjct: 732 LSKATGTAILDHLL 745
Score = 92.4 bits (228), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 102/185 (55%), Gaps = 13/185 (7%)
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPV 273
M++LD E Q G++YL GKV ++ ++++S CV+V++++R ++LPR + ++ E
Sbjct: 1 MYWLDVVE----QSGSIYLVGKVKLEGEDAYASACVVVRDVERSFFVLPRVDP-ESGERY 55
Query: 274 SIAQVYSEF-DQIATQY--KILDFKSRKIEKKYAFNLPGVP--DLSEYLEVRYSAKCPAL 328
+A+V++E ++ + K FK + +++ Y F VP D +EYL+V+Y +K
Sbjct: 56 PMAKVWAETRAELVPRCVPKQAPFKCKGVKRGYCFGDESVPRDDATEYLKVKYLSKFRPP 115
Query: 329 P---SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 385
P D G + G + LE L++RK+ GP W+ + + ++SWC EV+
Sbjct: 116 PRGLCDRGGRVIEKILGAGATPLELFLVKRKLMGPCWIRVDKPKAHSPKVSWCAVEVEVA 175
Query: 386 QMEKI 390
+ I
Sbjct: 176 SPKAI 180
>gi|402594858|gb|EJW88784.1| DNA polymerase [Wuchereria bancrofti]
Length = 1034
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 157/304 (51%), Positives = 198/304 (65%), Gaps = 35/304 (11%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ FI T + + + I+ ELN LPL IQIT + G VLSRT++GGR+ERNE+LLLHAF+
Sbjct: 459 LIRFINNTWMDAWLSLVIIVELNALPLFIQITKIVGGVLSRTMLGGRAERNEYLLLHAFN 518
Query: 462 EKSYVLPDKQYGKNKK----EGEETGEA-------NKGKGRKKAAYSGGLVLEPKKGFYD 510
+ YV P+K +KK E ++T A NK +K Y+GGLVL+PK G YD
Sbjct: 519 KAGYVAPNKYQPDSKKRKQSELKDTRSADNHPEDYNKILQNRKGQYAGGLVLDPKMGLYD 578
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT--GILPSEIK 568
FI+L+DFNSLYPSIIQEYNICFTT+ + ++ +PE DT GILP EI+
Sbjct: 579 TFILLLDFNSLYPSIIQEYNICFTTVDMSKKDKNE-------MPELPSDTNEGILPREIR 631
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
LVE RR VK +MK L+ QYDIRQ LKLTANSMYGCLGF SRF+A+PLAAL+
Sbjct: 632 SLVERRRDVKRMMKSEKLTEQQRQQYDIRQMGLKLTANSMYGCLGFQQSRFYAKPLAALI 691
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN--------------DYDSVFK-I 673
TA+GREIL++TK LVE Y VIYGDTDS+MI+ + DY + K I
Sbjct: 692 TAQGREILMHTKDLVEKNGYSVIYGDTDSVMINTGFSERSELQHGLDIVRRDYSFIVKQI 751
Query: 674 GNQI 677
GN+I
Sbjct: 752 GNEI 755
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/189 (41%), Positives = 115/189 (60%), Gaps = 10/189 (5%)
Query: 204 TDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHS-SCCVIVQNIDRKIYLLP 262
T+ E + V R ++LDAFED K PGTVYLFG++ N S S SCCV+V+NI R+ +L+
Sbjct: 65 TNSEGEPVLRFYWLDAFEDPIKMPGTVYLFGRLI---NGSISESCCVVVKNIWRQ-HLVN 120
Query: 263 RSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS 322
E + V + QV E +I + K R EKK+A+N VP ++ LEV+YS
Sbjct: 121 DVE----TDEVDLMQVNEEVQKILRSMGVKVVKCRPCEKKFAYNDGVVPQSAQVLEVQYS 176
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEV 382
P LP DLSG+TFSHVF T + +E LL+E +KGPSW+E + ++++ K+E
Sbjct: 177 FNDPRLPMDLSGETFSHVFNTTANAMERLLIETGMKGPSWIEISGCDVSSIQVTYVKHEF 236
Query: 383 QCNQMEKIR 391
+ ME+++
Sbjct: 237 TVD-MERMK 244
Score = 43.5 bits (101), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 728 GVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPL 787
G+D+VRRD+S + + G ++ IL QS D+ ++ IH ++K++ ++ +
Sbjct: 736 GLDIVRRDYSFIVKQIGNEILDIILSVQSQNR---DEIIEQIHSRLQKLKEEISQELLEN 792
Query: 788 TLLEITKQLTKAPE 801
++ +I KQLT+ P+
Sbjct: 793 SMFQIFKQLTRNPD 806
>gi|453055722|pdb|4B08|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha,
Selenomethionine Protein
Length = 910
Score = 278 bits (712), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 168/403 (41%), Positives = 248/403 (61%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 420 IQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 479
Query: 483 GE--ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E A+ KKA Y GGLV EP+KG + ++++ DFNSLYPSIIQE+NICFTT+
Sbjct: 480 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVXDFNSLYPSIIQEFNICFTTVD--- 536
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK + K +Q DIRQ+A
Sbjct: 537 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVXKT-ETDPHKRVQCDIRQQA 594
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANS YGCLG+ NSRF+A+PLA LVT KGREIL NT+ L E+ N V+YGDTDS+ I
Sbjct: 595 LKLTANSXYGCLGYVNSRFYAKPLAXLVTNKGREILXNTRQLAESXNLLVVYGDTDSVXI 654
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 655 DTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNG 714
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 715 TTVLEVKGLDXKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 769
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK Q+ L + GR
Sbjct: 770 ETNNIRIDKYKINXKLSKDPKAYPGGKNXPAVQVALRXRKAGR 812
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 99/186 (53%), Gaps = 17/186 (9%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+ F+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 3 TFQXFWLDYCE----VNNTLILFGKVKLKDDNCVSAX-VQINGLCRELFFLPR----EGK 53
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 54 TPTDIHEEIIPL--LXDKYGLDNIRAKPQKXKYSFELPDIPSESDYLKVLLPYQTPKSSR 111
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSR-ISWCKYEVQC 384
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ R S C EV
Sbjct: 112 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIXGPCWLDIKGADFNSIRNASHCAVEVSV 171
Query: 385 NQMEKI 390
++ + I
Sbjct: 172 DKPQNI 177
>gi|330818780|ref|XP_003291516.1| hypothetical protein DICPUDRAFT_49884 [Dictyostelium purpureum]
gi|325078288|gb|EGC31947.1| hypothetical protein DICPUDRAFT_49884 [Dictyostelium purpureum]
Length = 1459
Score = 278 bits (711), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 183/450 (40%), Positives = 258/450 (57%), Gaps = 39/450 (8%)
Query: 364 EFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLI---------GIVEFIKFTMLHSS 414
EF EK S + CK ++ I +KQ + YL + FI+
Sbjct: 729 EFLPKEKNYSLVELCKSQL------GIENKQEINYLAIEPYYDTAKKLNIFIEINENDCF 782
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK 474
I K++ +L V PL Q+TN+ GN +++L R+ER E+LLLH F+EK Y+LPDK Y
Sbjct: 783 VIFKLIFKLLVFPLTKQLTNLAGNQWNKSLKSNRAERIEYLLLHNFYEKKYLLPDKVYQS 842
Query: 475 NKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT 534
KK+ +G YSGGLVL+PK FYD++++L+DFNSLYPSIIQE+N+CFT
Sbjct: 843 IKKDSSNSG------------YSGGLVLDPKIDFYDRYVVLLDFNSLYPSIIQEFNVCFT 890
Query: 535 TIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
TIP +D P + GILP+ +K LV RR++K M+ + Q
Sbjct: 891 TIPRERREDGKWVE--AEPPSSSIKKGILPTVLKSLVGKRREIKKKMENEKNETQK-KQL 947
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 654
DI+Q+A+KL ANSMYGCLGF NSRFFA PLA LVT KGRE L S+V +NYEV+YGD
Sbjct: 948 DIQQQAVKLIANSMYGCLGFSNSRFFALPLAELVTRKGRENLQKGVSIVGKMNYEVVYGD 1007
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ--LELDIDGVYKYMLLLKKKKYAALSI 712
TDSLM+ V ++ IG +I+ + N+ Y+ +E+ +DG++K +LL KKKKYA L
Sbjct: 1008 TDSLMVYTGVPTFNEAETIGREIQKKINESYRNSVMEIGLDGIFKRLLLFKKKKYACLKE 1067
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD-EQSYTDYSLDDRLQNIHE 771
++ +E KG+D+VRRD+ L E G++++ IL E+ ++L I E
Sbjct: 1068 YRIDANTTATERENKGLDIVRRDYCGLTKEMGQYLLDLILSGEEKIVLFTL------IKE 1121
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+++K L + ITK L+K E
Sbjct: 1122 YLEKTSQKLKENSYEVDKFVITKTLSKPIE 1151
Score = 86.7 bits (213), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 17/169 (10%)
Query: 244 HSSCCVIVQNIDRKIYLLPRSEHL-KTKEPVSIA----QVYSEFDQIATQYKILDFKSRK 298
+SSCC+ V+N+ R ++ LPR L ++ E +I ++ E + + +I D+K +K
Sbjct: 406 YSSCCIFVENMIRNVFFLPRDYILDESGESTTIQTTDERIEKEIKSLMEKNRIKDYKIKK 465
Query: 299 IEKKYAF-------NLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENL 351
+++ AF NLP +L+ + +V Y + PALP+D+ G TF +G +S E
Sbjct: 466 VKRTSAFDYQVAHKNLPISEELNVW-KVSYPSTHPALPNDIQGSTFRCAYGITSSPSELF 524
Query: 352 LLERKIKGPSWLEFPEAEKFPSRI----SWCKYEVQCNQMEKIRSKQGL 396
LL+RKI GPSWL + I S+C+YE++ + I + +
Sbjct: 525 LLKRKIMGPSWLTISAGYQMEFSIGQKKSYCRYEIKTKSFKDITPSKAI 573
>gi|146164643|ref|XP_001013747.2| DNA polymerase catalytic subunit [Tetrahymena thermophila]
gi|146145697|gb|EAR93502.2| DNA polymerase catalytic subunit [Tetrahymena thermophila SB210]
Length = 1396
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 188/447 (42%), Positives = 262/447 (58%), Gaps = 72/447 (16%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK---- 470
Y ++IM L ++PL Q+T++CGN+ +L R+ERNE LLLH F++ +YV PD
Sbjct: 698 YALRIMYHLQIVPLTKQLTSICGNIWMGSLQNQRAERNEMLLLHKFNQLNYVYPDNFKNL 757
Query: 471 -----------QYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
Q K +E E+ + NK +K+ Y GG V EP+KG Y+++I+L+DFN
Sbjct: 758 PESYKKKHKNAQIRKQYEEDEDQAQGNKNPKKKENKYKGGQVFEPEKGLYNEYIVLLDFN 817
Query: 520 SLYPSIIQEYNICFTT-----IPVRM------------LQDS------------------ 544
SLYPSIIQE+N+CFTT IP+ M +Q S
Sbjct: 818 SLYPSIIQEFNVCFTTCVRDPIPLEMQMAPFLGNKKAAIQYSKNQNTKENKMQDEDEEDN 877
Query: 545 ---DITTLCEYLPEHQVDTGI--LPSEIKKLVESRRQVKALM---KQPNLSSDLLMQYDI 596
I + LP +V GI LPS ++ LVE R+ VK + K P + L DI
Sbjct: 878 ENEQIVQTHDVLPTIEVIKGIAPLPSILQYLVEQRKVVKNQIKGQKDPQVIETL----DI 933
Query: 597 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 656
+QKA KL ANSMYGCLGF +SRF+A PLA+ +TAKGR IL ++K +VE++ Y VIYGDTD
Sbjct: 934 KQKAFKLVANSMYGCLGFSSSRFYAMPLASFITAKGRHILFDSKKIVEDMGYSVIYGDTD 993
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS--- 713
SLMI N++ K G IK + N YK+L+LDIDGV+K MLLLKKKKYA L ++
Sbjct: 994 SLMIKPGTNEFLEAVKTGLSIKIKVNSKYKKLQLDIDGVFKNMLLLKKKKYATLKVANWE 1053
Query: 714 --KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
K +N +EIKG+DVVRRDW QL+ +AG ++ IL+ +S ++ LDD I +
Sbjct: 1054 EVKNTNAPEKLEKEIKGIDVVRRDWCQLSRDAGNKILEIILESKS-SENMLDD----IKK 1108
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTK 798
++ ++ D++ + + ITK+LTK
Sbjct: 1109 YLIQLNDDINQKNIKNSNYYITKRLTK 1135
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 10/166 (6%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS 274
+ D F D +P +Y F KV K+ N+ +C + + I R ++ P S+ V+
Sbjct: 289 YLYDYFYDAQVKPDKIYAFAKVQNKQTNAFDTCVIQIDTIIRNLFFYPSSD------TVT 342
Query: 275 IAQVYSEFDQIA----TQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
Q+ +E ++ T K ++F ++K YAF LP S + +V S + +
Sbjct: 343 EQQIKNEIAELLKKEQTSRKNVEFLGAFVDKNYAFELPIPRGKSRWYQVVMSYEYEVISP 402
Query: 331 DLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRIS 376
D G FS+ G+ S LE L+ +KI GPSW+ F + S I+
Sbjct: 403 DTKGQYFSYCVGSTYSALETFLITKKITGPSWVRFQNVKDTTSCIT 448
>gi|66359588|ref|XP_626972.1| DNA polymerase alpha catalytic subunit [Cryptosporidium parvum Iowa
II]
gi|46228043|gb|EAK88942.1| DNA polymerase alpha catalytic subunit [Cryptosporidium parvum Iowa
II]
Length = 1488
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 179/412 (43%), Positives = 255/412 (61%), Gaps = 29/412 (7%)
Query: 410 MLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
++ S I K++ L VLPL ++TN+ G + S++L+ R+ERNE+LLLH FH+ +V PD
Sbjct: 747 LIVSVGIFKLLFHLQVLPLTRELTNLAGFLWSKSLLFLRAERNEYLLLHEFHKGKFVTPD 806
Query: 470 ----KQYGKNKKEGEETGEANK--GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYP 523
Q K + E E +K +K+ YSGGLVLEP G YD FI+L+DFNSLYP
Sbjct: 807 CIQRNQKYKIRAEDSLISEIDKDDNNSKKEETYSGGLVLEPITGLYDSFILLLDFNSLYP 866
Query: 524 SIIQEYNICFTT-IPVRMLQDSDITTLCEYL-----PEHQVDTGILPSEIKKLVESRRQV 577
SIIQE+NICFTT P + D+ T L +Q D+ +LP ++ LV+ RR +
Sbjct: 867 SIIQEFNICFTTREPTDLGPDATETFESSSLIDRNSSSNQFDSTVLPGILESLVKRRRHI 926
Query: 578 KALMKQPNLSSDLL-MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
K ++K N+ S Q +IRQ ALKLTANS+YGCLG+ NSRF+A+ LA+++T GR+IL
Sbjct: 927 KEILK--NMPSGTRKSQLEIRQLALKLTANSLYGCLGYKNSRFYAKDLASIITFYGRQIL 984
Query: 637 LNTKSLVEN-LNYEVIYGDTDSLMISCNVND------YDSVFKIGNQIKSECNKLYKQLE 689
TK VE+ +VIYGDTDS+M++ N+ D Y V K+ +QIK NK Y +LE
Sbjct: 985 QKTKLKVEDETKLQVIYGDTDSIMVNTNILDDGNGEGYYHVLKLASQIKQIVNKDYTKLE 1044
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
LD+DGV + +LLLKKKKYA + I ++ E KG+D+VRRDWS L + V +
Sbjct: 1045 LDLDGVLQRLLLLKKKKYACIQIVDFHRKQL--KLECKGLDLVRRDWSILT----RNVST 1098
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
Q+L+ +++ +D + NI ++ + L++ +PL ITK LTK P+
Sbjct: 1099 QLLN-LLFSNEPIDTVITNILNTLESLNEALNSNSIPLESFIITKTLTKLPQ 1149
Score = 106 bits (265), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 110/202 (54%), Gaps = 19/202 (9%)
Query: 204 TDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFV------KENNSHSSCCVIVQNIDRK 257
T+ E +F + ++ ED G +YLFGK+ K + S SCC++++ R
Sbjct: 278 TNEEESLIF--YLIEVTED--SGAGELYLFGKIMTFSGMDEKIHFSTESCCLVIKETWRS 333
Query: 258 IYLLPRSEHLKTKEPVSIAQ-VYSEFDQIATQYKILDFKSRKIEKKYAFNLPGV---PDL 313
+Y+ PR +P+S++Q V E ++ +Y+I + + + + + F+ V P+
Sbjct: 334 LYVYPRESMPNHPDPISVSQDVAKEILELRKEYRIPKIQIKPVVRNFCFSEKDVKYGPN- 392
Query: 314 SEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS 373
+L++ YS+K P+LP++LSG+TFS +FGT TS EN +++R IKGPSWL + +
Sbjct: 393 QPFLKLLYSSKNPSLPTNLSGETFSRIFGTSTSLTENFIIKRDIKGPSWLVISKPYQIVP 452
Query: 374 ----RISWCKYEVQCNQMEKIR 391
R S CK EV + IR
Sbjct: 453 VGGGRKSQCKVEVHVPNWKSIR 474
Score = 44.3 bits (103), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 58/96 (60%), Gaps = 5/96 (5%)
Query: 100 TNKFAAFQKLKDLKGQGVKHKYEFTA-DENVYEEVSEKEYTERVLKRQEDDWIDDDGGDG 158
TN A +++ ++ +K +T D +++EEV E+EY + +R+ +++ DD G G
Sbjct: 8 TNAQGALSEIRKIREGKIKASDAYTLKDNDIFEEVDEEEYQNIIKERRSGNFVVDDNGIG 67
Query: 159 YVEDGREIFDDDIEDVPQKKE---KHDKRKKNKNIQ 191
Y +DGR++ ++ I +P + ++DK+++ ++I+
Sbjct: 68 YEDDGRDLMENYIP-LPSENNVAKRNDKKRRKEHIK 102
>gi|297808923|ref|XP_002872345.1| hypothetical protein ARALYDRAFT_327035 [Arabidopsis lyrata subsp.
lyrata]
gi|297318182|gb|EFH48604.1| hypothetical protein ARALYDRAFT_327035 [Arabidopsis lyrata subsp.
lyrata]
Length = 1376
Score = 276 bits (707), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 181/451 (40%), Positives = 254/451 (56%), Gaps = 64/451 (14%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+VE I+ + +++M L+VLPL +Q+TN+ GN+ TL G R++RNE+ LLH FH
Sbjct: 670 LVELIERGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGNTLQGARAQRNEYYLLHTFH 729
Query: 462 EKSYVLPDK--QYGKNKKEGE---------------------ETGEANKGKGRKKAAYSG 498
+ Y+LPDK Q+ K +K + E + NK K K AY+G
Sbjct: 730 SRKYILPDKISQHMKERKSSKRRINHGPEDHNVDELDVDLALENDQGNKTK--KGPAYAG 787
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLC-------E 551
GLVLEPKKG YDK+++L+DF+SLYPSIIQ ++ R+ D L E
Sbjct: 788 GLVLEPKKGLYDKYVLLLDFSSLYPSIIQVSRPNIISVS-RLYHDQKTEFLVYPIVRHLE 846
Query: 552 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGC 611
+ P + ++ LV R+ VK M +L DIRQ+ALKLTANS YG
Sbjct: 847 FFPRYLME---------HLVSIRKCVKLKMNDSLKCREL----DIRQEALKLTANSFYGY 893
Query: 612 LGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSV 670
LGF NSRF+ GREIL T V+N LN EVIYGDTDS+MI ++D + V
Sbjct: 894 LGFSNSRFY-----------GREILQRTVDFVQNHLNLEVIYGDTDSIMIHSGLDDIEEV 942
Query: 671 FKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVD 730
IG ++ E NK Y+ L++++DG+YK MLLL+KKKYAA+ + + +GK+ E KGVD
Sbjct: 943 KAIGAKVIQEVNKKYRCLKIELDGIYKRMLLLRKKKYAAIKL-QFKDGKICEEIERKGVD 1001
Query: 731 VVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLL 790
+VRRDWS L+ E G +++IL S +D ++ IH + KI+ ++ NG V L
Sbjct: 1002 MVRRDWSLLSKEIGDVCLAKIL-----CGGSCEDVVEAIHNELMKIKEEMRNGQVALEKY 1056
Query: 791 EITKQLTKAPEGGKVCITQIRLSRNRRGRRR 821
ITK L+K+PE +Q + R R+R
Sbjct: 1057 VITKALSKSPEAYPDSKSQPHVQVALRMRQR 1087
Score = 114 bits (285), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 35/242 (14%)
Query: 170 DIEDVPQKK--EKHDKRKKNKN-IQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIY-K 225
+++D P+ + HD R+ + N + NA L D + LDA+E+ +
Sbjct: 209 EMQDSPEFEVIPPHDSRQSDANQVFKLNACQKEFDLGADGS----LLFYILDAYEEPFGA 264
Query: 226 QPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQ-------- 277
G +YLFGKV K +++ SCC +V+ I R +Y +P + E +++ Q
Sbjct: 265 SKGIIYLFGKV--KTGDTYKSCCAVVKYIQRCVYAIPNDTIFPSHEIMTLEQEVKESRLS 322
Query: 278 --------------VYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEY-LEVRYS 322
+ E Q Q + ++ +++ YAF+ P VP +Y L++ Y
Sbjct: 323 PESFRGKLHEMASKLKKEISQQLLQLNVSNYSMALVKRNYAFDRPDVPAREQYVLKINYP 382
Query: 323 AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFP--EAEKFPSRISWCKY 380
K P LP DL G++F V G+ TS LE +L+RKI GPSWL+ A R+SWCK
Sbjct: 383 FKDPPLPEDLKGESFCAVLGSHTSALELFILKRKIMGPSWLKISIFSATLKSQRVSWCKS 442
Query: 381 EV 382
EV
Sbjct: 443 EV 444
>gi|353237576|emb|CCA69546.1| related to POL1-DNA-directed DNA polymerase alpha, 180 KD subunit
[Piriformospora indica DSM 11827]
Length = 1412
Score = 276 bits (705), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 161/406 (39%), Positives = 237/406 (58%), Gaps = 35/406 (8%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++EF++ L + + I + +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 716 LLEFVQHCELDAFLQMAITWNVKLLPLTRQLTNIAGNSWNKTLNGGRAERNEYILLHEFH 775
Query: 462 EKSYVLPDKQYGKNKKEGEET------GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIIL 515
Y+ PDK +GK + G A K K+ Y GGLV EPK+G +DK I++
Sbjct: 776 SLKYICPDKTWGKKAAAAAKVEAEEGDGAATNTKS-KRDKYKGGLVFEPKRGLWDKIILV 834
Query: 516 MDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRR 575
MDFNSLYPSIIQEYNI FTT+ +++S+ +P+ + G+LP I LV+ R+
Sbjct: 835 MDFNSLYPSIIQEYNIDFTTVETGQIEESE--DQIPPVPDPSLAQGVLPRLIADLVKRRK 892
Query: 576 QVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREI 635
VK MK P + Q+DI+Q+ALKLTANSMY L +GREI
Sbjct: 893 AVKGYMKSPGSTEAERKQWDIKQQALKLTANSMYW----------------LPWLRGREI 936
Query: 636 LLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGV 695
L NTK L E++ +V+YGDTDS+ ++ D KI +Q K N Y+ LE+D+DGV
Sbjct: 937 LTNTKQLAESMGLDVVYGDTDSVFVNSGHLDQTEALKIAHQFKKAVNDRYRLLEIDVDGV 996
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
++ +LLL+KKKYAA+ K+ N + + E+KG+D+ RR++S L+ + V+ IL +
Sbjct: 997 FQRLLLLQKKKYAAI---KVENN--VPTMEVKGLDMKRREYSALSKNTSRDVLGFILSGE 1051
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ ++ IH+++ I ++ NG V L I K+L K PE
Sbjct: 1052 -----ETEVVVEKIHDYLTAIGQNVRNGSVQLDDYTIFKRLGKNPE 1092
Score = 114 bits (284), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 96/179 (53%), Gaps = 9/179 (5%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKE 271
RMF+LD E K VYL GKV K N + S CV ++NI+R +++LPR ++
Sbjct: 319 LRMFWLDYLEVDAK----VYLVGKVLDKSTNRYVSACVAIENIERNLFVLPRERRMEGDY 374
Query: 272 PVSIA----QVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDL-SEYLEVRYSAKCP 326
I V ++F + ++ I + +++KYAF PGVP + +++V Y P
Sbjct: 375 ETDIQPEKRDVQADFTEARQKFDIKRCAMKWVKRKYAFGEPGVPTQETLWMKVVYPFSEP 434
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCN 385
A+PS+L+ + +FGT TS E +++RKI GP WL+ AE SWCK E +
Sbjct: 435 AMPSNLTSPNIARIFGTNTSAFELFVIKRKIMGPCWLQIKNAEIANKGASWCKLEATVS 493
Score = 49.3 bits (116), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 113 KGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGREIFDDDI 171
+GQ +++ D ++Y+EVSE++Y V R +DD+++DDG DGY++ G + F+ D+
Sbjct: 19 QGQSRAKQWKPKGDASIYDEVSERDYEAIVRGRLDQDDFVEDDGVDGYIDHGMDDFEGDM 78
Query: 172 EDVPQKKE 179
D ++E
Sbjct: 79 ADSEDERE 86
>gi|401412836|ref|XP_003885865.1| putative DNA polymerase alpha catalytic subunit [Neospora caninum
Liverpool]
gi|325120285|emb|CBZ55839.1| putative DNA polymerase alpha catalytic subunit [Neospora caninum
Liverpool]
Length = 1999
Score = 272 bits (695), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 187/513 (36%), Positives = 268/513 (52%), Gaps = 114/513 (22%)
Query: 411 LHSSYIIKIMC-ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
+ +++ +C LN LPL ++T + GN+ +R+L R+ERN FLLLH FH + ++ PD
Sbjct: 954 VQETFMTVALCWRLNCLPLTRELTTIGGNLWARSLQNQRAERNAFLLLHEFHREKFICPD 1013
Query: 470 KQ----------------------------YGKNKKEGEETGEANKG------------- 488
++ GK G+E G + G
Sbjct: 1014 REDPYSRGAPNKRPQAGRTAPRRWPGAPGGSGKEDDLGDEEGGIDAGLVERRDEDDGLHE 1073
Query: 489 ---------KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P 537
GR KA Y+GGLVLEP+ G YD F++L+DFNSLYPSIIQEYN+CF+T+ P
Sbjct: 1074 GRREGEERGSGRAKANYAGGLVLEPRVGLYDTFVLLLDFNSLYPSIIQEYNVCFSTVKRP 1133
Query: 538 VR------------------MLQDSDITTLCEYLPEHQVD-----TGILPSEIKKLVESR 574
VR LQ+ D T + E V G+LP +++LV+ R
Sbjct: 1134 VRSRHGQTSAACGPDGEHADTLQERDEDTSRPHAAEEDVQGIASTPGLLPRILRQLVQRR 1193
Query: 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
R VKA MK Q +I+Q ALKLTANS+YGCLGF SRF+A+ LAA +T +GR
Sbjct: 1194 RAVKASMKGETNPVKRAAQ-EIKQLALKLTANSIYGCLGFSRSRFYAKELAAFITQQGRN 1252
Query: 635 ILLNTKSLVE-NLNYEVIYGDTDSLMISCNVND-------YDSVFKIGNQIKSECNKLYK 686
IL TK VE L EV+YGDTDS+MI+ + D Y + ++G Q+K+E NK YK
Sbjct: 1253 ILTATKDKVERTLRLEVVYGDTDSIMINTGLRDDGGQGKAYAAAVRLGEQVKAEINKSYK 1312
Query: 687 QLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746
+LE+D++ V++ +LLLKKKKY + L K E KG+D+VRRDWS+L G
Sbjct: 1313 KLEIDLEAVFRRLLLLKKKKYVCCIV--LDYAKRQYKLEQKGLDIVRRDWSKLTKVVGNQ 1370
Query: 747 VISQIL--------------------DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVP 786
++ QI+ +++S + ++D ++ +HE ++++ L G VP
Sbjct: 1371 LL-QIMFRVGQNAPLPANAEASSPAKEKESASKDAVDSVVEELHEKLREVAKQLRAGRVP 1429
Query: 787 LTLLEITKQLTKAPE------GGKVCITQIRLS 813
L ITK LTK P+ GG V +++S
Sbjct: 1430 LEFFVITKALTKPPQMYARGTGGAVLHPHVQVS 1462
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 106/253 (41%), Gaps = 64/253 (25%)
Query: 195 AKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFV------KENNSHS--- 245
A D P+ D +FLDA+E+ GT+YLFGKV+ KE S
Sbjct: 414 ASDSQPPICED----GTLPFYFLDAWEEA----GTLYLFGKVWPAAAKPEKEGAEASPSL 465
Query: 246 ----------SCCVIVQNIDRKIYLLPRSEHLKTKEP----------------------- 272
SCCV+V+++ ++ R + T
Sbjct: 466 QKYRGGPPPQSCCVVVRDMMVPLFFRTREQVDMTSSSRLLEGEEEKDGAKASEERERELR 525
Query: 273 --------VSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSE--YLEVRYS 322
++ A + ++ +Y+ + + + YAF+ P VP E +++V
Sbjct: 526 RRLERRMEITKAFFKQDLPRLKQKYRWRKVAIKGVFRHYAFDAPDVPRGREQTFVKVFVP 585
Query: 323 AKCPAL-PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWL---EFPEAEKFPSRISWC 378
A P L P DL G+T+SHVFG S +E LL++R+IKGP WL F +SWC
Sbjct: 586 ASAPPLSPDDLEGETYSHVFGVGQSLIELLLVKRRIKGPCWLRIGNFTRPASAFDHLSWC 645
Query: 379 KYEVQCNQMEKIR 391
++EV + +R
Sbjct: 646 QHEVYIQSHKDVR 658
>gi|297790079|ref|XP_002862950.1| hypothetical protein ARALYDRAFT_359258 [Arabidopsis lyrata subsp.
lyrata]
gi|297308733|gb|EFH39209.1| hypothetical protein ARALYDRAFT_359258 [Arabidopsis lyrata subsp.
lyrata]
Length = 1018
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 162/355 (45%), Positives = 222/355 (62%), Gaps = 16/355 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+VE I+ + +++M LNVLPL +Q+TN+ GN+ +TL GG ++RNE +L H +H
Sbjct: 362 LVELIECGETDAWLSMELMFHLNVLPLTLQLTNISGNLWGKTLQGGSAQRNELVLRHTYH 421
Query: 462 EKSYVLPDKQYGKNK-KEGEETGEANKG-KGRKKAAYSGGLVLEPKKGFYDKFIILMDFN 519
K ++LPDK K + + +KG K +K AY+GGLV +K +
Sbjct: 422 WKKFILPDKISPHMKERTSHNVDDPSKGNKTKKGPAYAGGLVWSQRKAYMTNMCCFSISV 481
Query: 520 SLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
SIIQEYNICFTTIP + D LP Q GILP ++ LV R+ VK
Sbjct: 482 VFTLSIIQEYNICFTTIP----RSEDGV---PRLPSSQT-PGILPKLMEHLVSIRKCVKL 533
Query: 580 LMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
MK+ +DL + DIRQKALKLTANS+YG LGF NSRF+A+PLA L+T +GREIL
Sbjct: 534 KMKK---ETDLKCRELDIRQKALKLTANSLYGYLGFSNSRFYAKPLAELITLQGREILQR 590
Query: 639 TKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
T LV+N LN EVIYGDTDS+MI +++ V IG ++ E NK Y+ L++++D +YK
Sbjct: 591 TVDLVQNHLNLEVIYGDTDSIMIHSGLDNIKEVKAIGAKVIQEVNKKYRCLKIELDCIYK 650
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
MLLL+KKKYAA+ + + +GK+ E KGVD+VRRDWS L+ E G +++IL
Sbjct: 651 RMLLLRKKKYAAIKL-QFKDGKICEDIERKGVDMVRRDWSLLSKEIGDLCLAKIL 704
>gi|237844121|ref|XP_002371358.1| DNA polymerase alpha catalytic subunit [Toxoplasma gondii ME49]
gi|211969022|gb|EEB04218.1| DNA polymerase alpha catalytic subunit [Toxoplasma gondii ME49]
gi|221506357|gb|EEE31992.1| DNA polymerase alpha catalytic subunit, putative [Toxoplasma gondii
VEG]
Length = 2017
Score = 271 bits (693), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 181/518 (34%), Positives = 270/518 (52%), Gaps = 118/518 (22%)
Query: 411 LHSSYIIKIMC-ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
+ +++ ++C LN LPL ++T + GN+ +R+L R+ERN FLLLH FH + ++ PD
Sbjct: 969 VQETFMTVVLCWRLNCLPLTRELTTIGGNLWARSLQNQRAERNAFLLLHEFHREKFICPD 1028
Query: 470 K--QYGKNKK--------------------------------EGEETGEANKGK------ 489
K Y + G+E G A +G+
Sbjct: 1029 KDDPYARGAPVRRPHAGPGRGGPRRGPSASGARDEDPWEVEGGGQEVGVAGEGRDEEEAA 1088
Query: 490 ------------GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
R KA+Y+GGLVLEP+ G YD F++L+DFNSLYPSIIQEYN+CF+T+
Sbjct: 1089 NEGHREGEEKVGARAKASYAGGLVLEPRVGLYDTFVLLLDFNSLYPSIIQEYNVCFSTVK 1148
Query: 537 -PVRML---------QDSDITTL--------CEYLPEHQVD-----TGILPSEIKKLVES 573
PVR D +I + E V G+LP +++LV+
Sbjct: 1149 RPVRTRISRVQATNGPDGEIADAFREPDDRNLPHAAEEDVQGIASTPGLLPRILRQLVQR 1208
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RR VKA MK + Q +I+Q ALKLTANS+YGCLGF SRF+A+ +AA +T +GR
Sbjct: 1209 RRAVKASMKGESNPVKRATQ-EIKQLALKLTANSIYGCLGFSRSRFYAKEIAAFITQQGR 1267
Query: 634 EILLNTKSLVEN-LNYEVIYGDTDSLMISCNVND-------YDSVFKIGNQIKSECNKLY 685
IL+ K VE L EV+YGDTDS+MI+ ++D Y + ++G Q+K+E NK Y
Sbjct: 1268 NILMAAKDKVERILRLEVVYGDTDSIMINTGLHDDGGEGKTYAAAVRLGEQVKAEINKSY 1327
Query: 686 KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGK 745
K+LE+D++GV++ +LLLKKKKY + + + Q KG+D+VRRDW++L G
Sbjct: 1328 KKLEIDLEGVFRRLLLLKKKKYVCCIVVDYAKRQYKLEQ--KGLDIVRRDWAKLTKVVGN 1385
Query: 746 FVISQIL---------------------DEQS---YTDYSLDDRLQNIHEHMKKIRTDLD 781
++ I DE++ T Y++D ++ +HE ++++ L
Sbjct: 1386 QLLQIIFRIAQKDAALAPVSTPAADASKDEKAKSNETKYAVDTVVEELHEKLREVGKQLR 1445
Query: 782 NGFVPLTLLEITKQLTKAPE------GGKVCITQIRLS 813
G VPL ITK LTK P+ GG + ++++
Sbjct: 1446 AGGVPLEFFVITKALTKPPQMYARGAGGAIMHPHVQVA 1483
Score = 85.9 bits (211), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 117/296 (39%), Gaps = 67/296 (22%)
Query: 155 GGDGYVEDGREIF-DDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFR 213
GG + G +F DD E + + R + D+ LP+ D
Sbjct: 383 GGPMLPKRGLTLFMQDDPESETKTAAETQDRGALGSAAGDQGSDNQLPVCED----GTLP 438
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKE-----------------NNSHSSCCVIVQNIDR 256
+FLDA+E+ GT+YLFGKV+ SCCV+V+++
Sbjct: 439 FYFLDAWEEA----GTLYLFGKVWPAAAKREKEGAEGTIPQKYRGCPPQSCCVVVRDMMV 494
Query: 257 KIYLLPRSEHLKTKEPVSIAQVYSE----------------------------------- 281
++ R + T + + SE
Sbjct: 495 PLFFRTREQVEITSSLAGLLEGESEENPKDDADASEEREQELRRRVERRMEITKAFFKQD 554
Query: 282 FDQIATQYKILDFKSRKIEKKYAFNLPGVPDL--SEYLEVRYSAKCPAL-PSDLSGDTFS 338
++ +Y+ + + + YAF+ P VP +++V A P L P DL G+T+S
Sbjct: 555 LPKLKQKYRWRKVAIKGVFRHYAFDAPDVPRGRNQTFVKVFVPASAPTLNPEDLEGETYS 614
Query: 339 HVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRI---SWCKYEVQCNQMEKIR 391
HVFG S +E LL++R+IKGP WL + S SWC++EV + + +R
Sbjct: 615 HVFGVGQSLIELLLVKRRIKGPCWLRIENFSRPASAFEHSSWCQHEVYIHSHKDVR 670
>gi|221485502|gb|EEE23783.1| DNA polymerase alpha catalytic subunit, putative [Toxoplasma gondii
GT1]
Length = 2017
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 180/519 (34%), Positives = 271/519 (52%), Gaps = 120/519 (23%)
Query: 411 LHSSYIIKIMC-ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
+ +++ ++C LN LPL ++T + GN+ +R+L R+ERN FLLLH FH + ++ PD
Sbjct: 969 VQETFMTVVLCWRLNCLPLTRELTTIGGNLWARSLQNQRAERNAFLLLHEFHREKFICPD 1028
Query: 470 K--QYGKNKK--------------------------------EGEETGEANKGK------ 489
K Y + G++ G A +G+
Sbjct: 1029 KDDPYARGAPVRRPHAGPGRGGPRRGPSASGARDEDPWEVEGGGQDVGVAGEGRDEEEAA 1088
Query: 490 ------------GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
R KA+Y+GGLVLEP+ G YD F++L+DFNSLYPSIIQEYN+CF+T+
Sbjct: 1089 NEGHREGEEKVGARAKASYAGGLVLEPRVGLYDTFVLLLDFNSLYPSIIQEYNVCFSTVK 1148
Query: 537 -PVRM------------------LQDSDITTLCEYLPEHQVD-----TGILPSEIKKLVE 572
PVR ++ D L + E V G+LP +++LV+
Sbjct: 1149 RPVRTRISRVQATNGPDGEIADGFREPDDRNL-PHAAEEDVQGIASTPGLLPRILRQLVQ 1207
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
RR VKA MK + Q +I+Q ALKLTANS+YGCLGF SRF+A+ +AA +T +G
Sbjct: 1208 RRRAVKASMKGESNPVKRATQ-EIKQLALKLTANSIYGCLGFSRSRFYAKEIAAFITQQG 1266
Query: 633 REILLNTKSLVEN-LNYEVIYGDTDSLMISCNVND-------YDSVFKIGNQIKSECNKL 684
R IL+ K VE L EV+YGDTDS+MI+ ++D Y + ++G Q+K+E NK
Sbjct: 1267 RNILMAAKDKVERILRLEVVYGDTDSIMINTGLHDDGGEGKTYAAAVRLGEQVKAEINKS 1326
Query: 685 YKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAG 744
YK+LE+D++GV++ +LLLKKKKY + + + Q KG+D+VRRDW++L G
Sbjct: 1327 YKKLEIDLEGVFRRLLLLKKKKYVCCIVVDYAKRQYKLEQ--KGLDIVRRDWAKLTKVVG 1384
Query: 745 KFVISQIL---------------------DEQS---YTDYSLDDRLQNIHEHMKKIRTDL 780
++ I DE++ T Y++D ++ +HE ++++ L
Sbjct: 1385 NQLLQIIFRIAQKDAALAPVSTPAADASKDEKAKSNETKYAVDTVVEELHEKLREVGKQL 1444
Query: 781 DNGFVPLTLLEITKQLTKAPE------GGKVCITQIRLS 813
G VPL ITK LTK P+ GG + ++++
Sbjct: 1445 RAGGVPLEFFVITKALTKPPQMYARGAGGAIMHPHVQVA 1483
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/303 (24%), Positives = 118/303 (38%), Gaps = 81/303 (26%)
Query: 155 GGDGYVEDGREIF-DDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFR 213
GG + G +F DD E + + R + D+ LP+ D
Sbjct: 383 GGPMLPKRGLTLFMQDDPESETKTAAEAQDRGALGSAAGDQGSDNQLPVCED----GTLP 438
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKE-----------------NNSHSSCCVIVQNIDR 256
+FLDA+E+ GT+YLFGKV+ SCCV+V+++
Sbjct: 439 FYFLDAWEEA----GTLYLFGKVWPAAAKREKEGAEGTIPQKYRGCPPQSCCVVVRDMMV 494
Query: 257 KIYLLPRSEHLKTKEPVSIAQVYS------------------------------------ 280
++ +T+E V I +
Sbjct: 495 PLFF-------RTREQVEITSSLAGLLEGEGEENPKDDADASEEREQELRRRVERRMEIT 547
Query: 281 ------EFDQIATQYKILDFKSRKIEKKYAFNLPGVPDL--SEYLEVRYSAKCPAL-PSD 331
+ ++ +Y+ + + + YAF+ P VP +++V A P L P D
Sbjct: 548 KAFFKQDLPKLKQKYRWRKVAIKGVFRHYAFDAPDVPRGRNQTFVKVFVPASAPTLNPED 607
Query: 332 LSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRI---SWCKYEVQCNQME 388
L G+T+SHVFG S +E LL++R+IKGP WL + S SWC++EV + +
Sbjct: 608 LEGETYSHVFGVGQSLIELLLVKRRIKGPCWLRIENFSRPASAFEHSSWCQHEVYIHSHK 667
Query: 389 KIR 391
+R
Sbjct: 668 DVR 670
>gi|403223257|dbj|BAM41388.1| DNA polymerase [Theileria orientalis strain Shintoku]
Length = 1528
Score = 264 bits (675), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 170/430 (39%), Positives = 254/430 (59%), Gaps = 46/430 (10%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++ + +L + + ++++ +L +LPL ++T GN SR+L RSER ++LL+H F+
Sbjct: 689 LLKLTQCNLLSAIHTLQLLFKLQILPLTKELTTTAGNTWSRSLQCARSERIDYLLMHEFY 748
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
Y+L D + KN + + + +K +G+K +Y GGLV EP+ G YD FI+L+DFNSL
Sbjct: 749 HNKYIL-DHIFEKNAYK-DNYQDDDKNEGKKGNSYEGGLVFEPRSGLYDNFILLLDFNSL 806
Query: 522 YPSIIQEYNICFTTIPVRM---------------------LQDSDITTLCEYLPEHQVDT 560
YPSIIQEYNICFTT V+ ++S++ L E
Sbjct: 807 YPSIIQEYNICFTTTYVKTEYGNEGNQRELNENEGEDGGNSRESEVVILDE--------V 858
Query: 561 GILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSR 618
GILPS +K+LVE R ++K K ++ L Q RQ ALKL ANS+YGC+G SR
Sbjct: 859 GILPSVLKRLVELRIKIK---KAIGTETNELRKSQLKTRQLALKLIANSIYGCIGSTYSR 915
Query: 619 FFAQPLAALVTAKGREILLNTKSLVENL-NYEVIYGDTDSLMISCNVND------YDSVF 671
F + +A+ +T +GR +L +TK VEN+ N VIYGDTDSLMI+ N+ D Y++
Sbjct: 916 FHCKYIASYITQQGRNLLKSTKEKVENVFNLNVIYGDTDSLMINTNIRDDGNATNYNAAN 975
Query: 672 KIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGK-MICSQEIKGVD 730
+I + + NK +K+LE+ IDGV+ +LLLKKKKYA+L + + + + + +EIKG+D
Sbjct: 976 QIAVNLVNFINKSHKKLEIGIDGVFNRLLLLKKKKYASLKVGNVVDYENNVFHREIKGLD 1035
Query: 731 VVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLL 790
+RRDWS L E G ++ IL+ Y +D +Q IH ++ I L++ + LT
Sbjct: 1036 FIRRDWSLLTKEVGNQLLKIILNSNYYN--GVDGIVQEIHSTLQNINQQLNDQSIELTKY 1093
Query: 791 EITKQLTKAP 800
ITKQLTK P
Sbjct: 1094 LITKQLTKNP 1103
Score = 43.9 bits (102), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 34/200 (17%)
Query: 222 DIYKQP-GTVYLFGKVFVKENNSHSSCCVI-VQNIDRKIYLLPRSEHL---------KTK 270
D+ + P G ++LFG++ K + C+I V+N+ R ++ PR + T+
Sbjct: 277 DLCEGPNGHLHLFGRM--KTTGVETETCMITVKNMMRNLFFKPRMDLAFNETGELINSTR 334
Query: 271 EPVS------------------IAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
E S + + E + I Y I K + +++ P +
Sbjct: 335 ETSSTDYEGIIKKGSELYERYLMMNFFKEMETIRKNYGIKKIKYKLVKRSLLTYGPTNEE 394
Query: 313 LSEYLEVRYSAKCPALPS-DLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
L Y++V Y + P + G + ++ + +E LL+RKIKGP+WL K
Sbjct: 395 L--YIKVCYPYQSPQIEKRHYCGTYYEDIYNINATQIELFLLKRKIKGPNWLRINNFRKT 452
Query: 372 PSRISWCKYEVQCNQMEKIR 391
S+CK E++ + + ++
Sbjct: 453 NDAQSYCKIELEIDSYKDVQ 472
>gi|302686118|ref|XP_003032739.1| hypothetical protein SCHCODRAFT_67364 [Schizophyllum commune H4-8]
gi|300106433|gb|EFI97836.1| hypothetical protein SCHCODRAFT_67364 [Schizophyllum commune H4-8]
Length = 1394
Score = 263 bits (672), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 155/410 (37%), Positives = 231/410 (56%), Gaps = 60/410 (14%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ L + + I ++ +LPL Q+T + GN ++TL GGR+ERNE++LLH FH
Sbjct: 713 LLTFVRHCELDAHLQMAIAAKVQILPLTKQLTQLAGNSWNKTLNGGRAERNEYILLHEFH 772
Query: 462 EKSYVLPDKQYGKN----KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
Y+ PDK YGK +++ +E G KG K+ Y GGLVL PK+ ++ +I++MD
Sbjct: 773 RLKYICPDKTYGKKAAPVREDPDEEGGGTSKKGAKRDKYKGGLVLAPKRQLWETYILVMD 832
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCE---YLPEHQVDTGILPSEIKKLVESR 574
FNSLYPSIIQEYNI FTT+ + +DI + LP + G+LP I LV R
Sbjct: 833 FNSLYPSIIQEYNIDFTTVS----RGTDIGQTPDDEAELPSSEAGQGVLPRLIATLVSRR 888
Query: 575 RQVKALMKQPNLSSDLLMQ---YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
RQVK LMK N++ +Q YDI+Q+ALKLTAN+M+
Sbjct: 889 RQVKNLMKDKNVTQAQYLQVCIYDIKQQALKLTANTMF---------------------- 926
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
L+ V+YGDTDS+ ++ N + KI N+ K N Y+ LE+D
Sbjct: 927 --------------LSLLVVYGDTDSVFVNSNQTELSKALKIANEFKKAVNDRYRLLEID 972
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+DGV++ +LLL+KKKYAA+ + + + EIKG+D+ RR++SQL+ ++V+ +I
Sbjct: 973 LDGVFQRLLLLQKKKYAAIKVDGSTT-----TTEIKGLDMKRREYSQLSKRVSQYVLDRI 1027
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L + + ++ IHE++ KI D+ G VPL I K+L K PE
Sbjct: 1028 LSGE-----PTEIVVEEIHEYLAKIGEDVRGGKVPLDEFIIFKRLGKNPE 1072
Score = 119 bits (299), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 98/189 (51%), Gaps = 14/189 (7%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPR-------- 263
R F+LD E G VY GK+ K+ N SCCV V+NI+R +++LPR
Sbjct: 308 LRFFWLDYLE----LNGNVYFIGKLKDKKTNQWHSCCVTVENIERNLFVLPREKRVEQGS 363
Query: 264 -SEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRY 321
E T EPV + VY++FD I KI +K + +++KYAF VP S +L+V Y
Sbjct: 364 DGEIYDTDEPVEMEDVYNDFDMIRGALKIKQWKGKFVKRKYAFGDKEVPRGESTWLKVVY 423
Query: 322 SAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
P +P D +FGT TS E L+L+RKI GP WL+ + +SWCK+E
Sbjct: 424 PFTEPTIPMDAISPNILKIFGTNTSAFELLVLKRKIMGPCWLQIKNPDVNFKGVSWCKFE 483
Query: 382 VQCNQMEKI 390
+ + I
Sbjct: 484 ATVSDPKDI 492
Score = 42.7 bits (99), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 126 DENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGRE 165
D +Y+EVSE++Y V R QEDD+++DDG DGY++ G E
Sbjct: 30 DTEIYDEVSEEQYRAIVRGRLQEDDFVEDDGVDGYMDTGVE 70
>gi|47191078|emb|CAF94751.1| unnamed protein product [Tetraodon nigroviridis]
Length = 205
Score = 263 bits (671), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 133/205 (64%), Positives = 160/205 (78%), Gaps = 11/205 (5%)
Query: 441 SRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK----NKKEGEETGEANKGKGRKKAAY 496
SRTLMGGRSERNEFLLLHAFHEK+Y++PDK K ++ EG+E E KGK RKKAAY
Sbjct: 1 SRTLMGGRSERNEFLLLHAFHEKNYIVPDKPSFKKAQLDQAEGDEEVEVAKGKRRKKAAY 60
Query: 497 SGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS------DITTLC 550
+GGLVL+PK GFYDKF++L+DFNSLYPSIIQE+NICFTT+ R Q S D
Sbjct: 61 AGGLVLDPKVGFYDKFVLLLDFNSLYPSIIQEFNICFTTVQ-REAQHSQKKNEDDEQEEI 119
Query: 551 EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG 610
+P+ ++ GILP EI+KLVE R+QVK LMKQ +++ D+ +QYDIRQKALKLTANSMYG
Sbjct: 120 PEIPDSNLEPGILPKEIRKLVERRKQVKGLMKQQDINPDVYLQYDIRQKALKLTANSMYG 179
Query: 611 CLGFPNSRFFAQPLAALVTAKGREI 635
CLGF SR +A+PLAALVT KGRE+
Sbjct: 180 CLGFSYSRLYAKPLAALVTHKGREV 204
>gi|145521204|ref|XP_001446457.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413935|emb|CAK79060.1| unnamed protein product [Paramecium tetraurelia]
Length = 1344
Score = 262 bits (670), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 169/461 (36%), Positives = 259/461 (56%), Gaps = 78/461 (16%)
Query: 405 FIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS 464
++ ++ + ++I+I +LN++ L Q+TN+CGNV +R+L+ R+ERNE LL+H F +
Sbjct: 602 LLQLSLKETKFVIQITQKLNIISLTRQLTNICGNVWNRSLLNQRAERNEMLLMHEFFLRG 661
Query: 465 YVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPS 524
++LPDK N + E+ + + + +K Y GGLV EPK Y ++++L+DFNSLYPS
Sbjct: 662 FLLPDKMSKINLSDEEKDQQIKEQESKK--TYGGGLVFEPKADIYTQYVLLLDFNSLYPS 719
Query: 525 IIQEYNICFTTI-----------------PVRM--------------LQDSDIT--TLCE 551
II EYNICFTT+ P + QD + T + +
Sbjct: 720 IIMEYNICFTTVQRDKINFEVDKTQLEEEPTQTKPQKSNKNKKKKDQTQDENDTKEKIKD 779
Query: 552 YLPEHQVD--TGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ-YDIRQKALKLTANSM 608
++ D +GILP I+KLV R+Q K M + S+ L+ Q Y+I+Q A+KL ANS+
Sbjct: 780 FIGSVDPDAGSGILPQIIEKLVNMRKQAKKEMSR---STGLMKQIYNIKQLAVKLVANSI 836
Query: 609 YGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC-NVNDY 667
YGCLGF +SRF+A +A+L+T KGR IL+++K+ VE N +VIYGDTDS+MI +
Sbjct: 837 YGCLGFSSSRFYAVGIASLITQKGRSILMDSKNTVERSN-DVIYGDTDSMMICARQEKNL 895
Query: 668 DSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQ--- 724
+ +G QI E NK YK+L L IDGV+ +LL+KKKKYA + I L + ++ Q
Sbjct: 896 SEILVLGTQIAKEINKKYKKLVLAIDGVFDTLLLMKKKKYAGIKIDNLED--LMTGQTEQ 953
Query: 725 -----EIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
E+KG+D+VRR++ ++ + V+ +L ++ DD ++ M++IR+
Sbjct: 954 PKFKMEVKGIDIVRREFCDISKKMQSHVLDILLKTKNR-----DDIHGDLITLMQEIRSM 1008
Query: 780 LD----------------NGF----VPLTLLEITKQLTKAP 800
D N F +P + I KQL KAP
Sbjct: 1009 FDALSGNSNADPKQLIAQNRFITYEIPTSDFIIVKQLNKAP 1049
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 15/168 (8%)
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPV 273
+++D +ED + PG++++FGKV + N + SC + ++ + YL + ++ +
Sbjct: 218 FYWIDIYEDQIRFPGSLFVFGKVKNHKLNVYDSCSLYFEDYRKTAYLSYENGRYTEQQLI 277
Query: 274 SIAQVYSEFDQIATQYKIL-----DFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKC-P 326
Q A K+L DF + ++++YAF + +P +YLEV Y+ K
Sbjct: 278 QECQ--------ALMKKVLGLGSKDFTYQFVDRQYAFEIADIPTSQQQYLEVSYTLKHGQ 329
Query: 327 ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSR 374
LP + F + + + +E L+ KI+GP WL+ + ++
Sbjct: 330 QLPVRIDNPIFKYALQSTQTLVEQFLIYNKIRGPCWLQLKSCQTIDTK 377
>gi|156086442|ref|XP_001610630.1| DNA polymerase alpha subunit [Babesia bovis T2Bo]
gi|154797883|gb|EDO07062.1| DNA polymerase alpha subunit, putative [Babesia bovis]
Length = 1483
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 165/395 (41%), Positives = 246/395 (62%), Gaps = 26/395 (6%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
++ +L LPL ++TN+ GN+ SR++ RSERN+FLLLH FH Y++ D + +
Sbjct: 721 FNLVIKLQALPLTKELTNIAGNLWSRSVQCARSERNDFLLLHEFHRSKYII-DHHFERFH 779
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
K+ + + + +K Y GGLVLEP+ G YD F++L+DFNSLYPSIIQE+N+CFTT
Sbjct: 780 KQTSDADKDDSDSKKKN--YEGGLVLEPETGLYDNFVLLLDFNSLYPSIIQEFNVCFTT- 836
Query: 537 PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK-QPNLSSDLLMQYD 595
V++L+D + L E TG+LP +K+LVE R VKA + + N S Q
Sbjct: 837 -VKLLEDGSVQVLTE-------TTGMLPQILKRLVELRASVKAAIAVEKNDSRK--AQLG 886
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGD 654
+RQ ALKL ANS+YGCLG SRF A+ +AA +T +GR +L +T+ VEN + VIYGD
Sbjct: 887 VRQLALKLVANSLYGCLGSVYSRFHARHMAAYITQQGRLVLQSTRERVENQYSLHVIYGD 946
Query: 655 TDSLMISCNVND------YDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYA 708
TDSLMI N+ D Y++ +I N + S NK +K+LE+ +D ++ +LLLKKKKYA
Sbjct: 947 TDSLMIDTNIRDDGSETSYEAAKQIANTLMSSINKSHKKLEIGMDAMFNRLLLLKKKKYA 1006
Query: 709 ALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT--DYSLDDRL 766
AL + + I ++EIKG+D +RRDWS L E G +++ IL+++ + +++ +
Sbjct: 1007 ALKV--VDYKSRIFAREIKGLDFIRRDWSILTKEVGNALLAIILNDKVNDPEELGVENTV 1064
Query: 767 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ IHE ++ + + G +P IT+QL K P+
Sbjct: 1065 EKIHETLRDVNNKIAEGNIPPKAWIITRQLAKNPQ 1099
Score = 77.0 bits (188), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 15/186 (8%)
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSE----HL-- 267
+ LD ED+ G + LFGK+ + N+S SC + VQ R ++ R + HL
Sbjct: 308 FYLLDLHEDV---GGALRLFGKI-RRSNSSTDSCMITVQQFMRCLFFKARMDLELGHLPE 363
Query: 268 --KTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC 325
+ E + Q ++EF+ I Y I K + +++K P L Y++V Y +
Sbjct: 364 LESSYERAFMKQFFNEFESIRKSYGIKKVKYKLVKRKLLTYGPSEEAL--YVKVCYPYQY 421
Query: 326 PALPSD-LSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQC 384
P+L + G+T+S V+G ++ E L++RKIKGPSWL EA RI+ CK+E +
Sbjct: 422 PSLKQEHFEGETYSDVYGATSTPGELFLVKRKIKGPSWLRITEARMSKERITTCKHEFEI 481
Query: 385 NQMEKI 390
+ + +
Sbjct: 482 DSHKNV 487
>gi|4808579|gb|AAD29860.1|AF093136_1 DNA polymerase alpha catalytic subunit [Toxoplasma gondii]
Length = 1690
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 180/518 (34%), Positives = 264/518 (50%), Gaps = 118/518 (22%)
Query: 411 LHSSYIIKIMC-ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
+ +++ ++C LN LPL ++T + GN+ +R+L R+ERN FLLLH FH + ++ PD
Sbjct: 969 VQETFMTVVLCWRLNCLPLTRELTTIGGNLWARSLQNQRAERNAFLLLHEFHREKFICPD 1028
Query: 470 K--QYGKNKK--------------------------------EGEETGEANKGK------ 489
K Y + G+E G A +G+
Sbjct: 1029 KDDPYARGPPVRRPHAGPGRGGPRRGPSASGARDEDPWEVEGGGQEVGVAGEGRDEEEAA 1088
Query: 490 ------------GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
R KA+Y+GGLVLEP+ G YD F++L+DFNSLYPSIIQEYN+CF+T+
Sbjct: 1089 NEGHREGEEKVGARAKASYAGGLVLEPRVGLYDTFVLLLDFNSLYPSIIQEYNVCFSTVK 1148
Query: 537 -PVRM---------LQDSDITTL--------CEYLPEHQVD-----TGILPSEIKKLVES 573
PVR D +I + E V G+LP +++LV+
Sbjct: 1149 RPVRTRISRVQATNGPDGEIADAFREPDDRNLPHAAEEDVQGIASTPGLLPRILRQLVQR 1208
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RR VKA MK + Q +I+Q ALKLTANS+YGCLGF SRF+A+ +AA +T +GR
Sbjct: 1209 RRAVKASMKGESNPVKRATQ-EIKQLALKLTANSIYGCLGFXRSRFYAKEIAAFITQQGR 1267
Query: 634 EILLNTKSLVEN-LNYEVIYGDTDSLMISCNVND-------YDSVFKIGNQIKSECNKLY 685
IL+ K VE L EV+YGDTDS+MI+ ++D Y + ++G Q+K+E NK Y
Sbjct: 1268 NILMAAKDKVERILRLEVVYGDTDSIMINTGLHDDGGEGKTYAAAVRLGEQVKAEINKSY 1327
Query: 686 KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGK 745
K+LE+D++GV++ +LLLKKKKY + + K E KG+D+VRRDW++L G
Sbjct: 1328 KKLEIDLEGVFRRLLLLKKKKYVCCIV--VDYAKRQYKLEQKGLDIVRRDWAKLTKVVGN 1385
Query: 746 ------FVISQ------ILDEQSYT------------DYSLDDRLQNIHEHMKKIRTDLD 781
F I+Q + + T + L+N + +K ++
Sbjct: 1386 QLLQIIFRIAQKDAAXAPVSTPAVTLPRTRRRRATRRNMPSTPWLKNSTRNCEKSGSNCG 1445
Query: 782 NGFVPLTLLEITKQLTKAPE------GGKVCITQIRLS 813
G VPL ITK LTK P+ GG + ++++
Sbjct: 1446 AGGVPLEFFVITKALTKPPQMYARGAGGAIMHPHVQVA 1483
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 117/296 (39%), Gaps = 67/296 (22%)
Query: 155 GGDGYVEDGREIF-DDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFR 213
GG + G +F DD E + + R + D+ LP+ D
Sbjct: 383 GGPMLPKRGLTLFMQDDPESETKTAAETQDRGALGSAAGDQGSDNQLPVCED----GTLP 438
Query: 214 MFFLDAFEDIYKQPGTVYLFGKVFVKE-----------------NNSHSSCCVIVQNIDR 256
+FLDA+E+ GT+YLFGKV+ SCCV+V+++
Sbjct: 439 FYFLDAWEEA----GTLYLFGKVWPAAAKREKEGAEGTIPQKYRGCPPQSCCVVVRDMMV 494
Query: 257 KIYLLPRSEHLKTKEPVSIAQVYSE----------------------------------- 281
++ R + T + + SE
Sbjct: 495 PLFFRTREQVEITSSLAGLLEGESEENPXDDADASEEREQELRRRVERRMEITKAFFKQD 554
Query: 282 FDQIATQYKILDFKSRKIEKKYAFNLPGVPDL--SEYLEVRYSAKCPAL-PSDLSGDTFS 338
++ +Y+ + + + YAF+ P VP +++V A P L P DL G+T+S
Sbjct: 555 LPKLKQKYRWRKVAIKGVFRHYAFDAPDVPRGRNQTFVKVFVPASAPTLNPEDLEGETYS 614
Query: 339 HVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRI---SWCKYEVQCNQMEKIR 391
HVFG S +E LL++R+IKGP WL + S SWC++EV + + +R
Sbjct: 615 HVFGVGQSLIELLLVKRRIKGPCWLRIENFSRPASAFEHSSWCQHEVYIHSHKDVR 670
>gi|209882968|ref|XP_002142918.1| DNA polymerase family protein [Cryptosporidium muris RN66]
gi|209558524|gb|EEA08569.1| DNA polymerase family protein [Cryptosporidium muris RN66]
Length = 1562
Score = 256 bits (653), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 169/429 (39%), Positives = 247/429 (57%), Gaps = 50/429 (11%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY--- 472
++K++ L VLPL ++TN+ G + S++L+ R+ERNE+LLLH FH+ +V PDK
Sbjct: 792 VLKLLFHLQVLPLTRELTNIAGFLWSKSLLNLRAERNEYLLLHEFHQAKFVTPDKITKIS 851
Query: 473 GKNKKEGEETGE-ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNI 531
NK + + E + + + +Y+GGLVLEP G YD+F+IL+DFNSLYPSIIQE+NI
Sbjct: 852 SYNKSQSQRLHEDTDTPEAEDEISYTGGLVLEPLIGLYDRFVILLDFNSLYPSIIQEFNI 911
Query: 532 CFTTIPVRMLQD-SDIT------------------------------TLCEYLPEHQVDT 560
CFT + + + DIT +L + D
Sbjct: 912 CFTKRNIGKISNIDDITKKSQEVSNLNSEAEIYSDENIFEYQGDIKDSLMNNFGTLKFDK 971
Query: 561 GILPSEIKKLVESRRQVKALMKQPNLSSDLL-MQYDIRQKALKLTANSMYGCLGFPNSRF 619
ILP ++ LV R+ +K ++K N +S +Q +IRQ ALKLTANS+YGCLG+ NSRF
Sbjct: 972 IILPGILESLVRRRKHIKDILKNLNSTSPSRRLQLEIRQLALKLTANSLYGCLGYKNSRF 1031
Query: 620 FAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVND------YDSVFK 672
+A+ LA+ +T GR+IL + K+ VE+ L +VIYGDTDS+M++ + D Y V K
Sbjct: 1032 YARDLASTITLYGRQILQSAKNKVEDELKLQVIYGDTDSIMVNTGILDEGDGYGYQQVLK 1091
Query: 673 IGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVV 732
+ NQIK NK YK+LE+D+D V + +LLLKKKKYA + + L K E KG+D+V
Sbjct: 1092 LANQIKQSINKDYKKLEIDLDDVLQRLLLLKKKKYACVKV--LDYYKRQFKLEYKGLDLV 1149
Query: 733 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEI 792
RRDWS+L + K +++ I + + LD I ++ + L+N + I
Sbjct: 1150 RRDWSKLTRDISKAILNSIFSNKPIEEVILD-----ILTLLEDLNEKLNNKTIEADYFII 1204
Query: 793 TKQLTKAPE 801
TK L K P+
Sbjct: 1205 TKALNKLPQ 1213
Score = 118 bits (295), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 109/204 (53%), Gaps = 19/204 (9%)
Query: 210 KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHS--------SCCVIVQNIDRKIYLL 261
+ + +D ED G +YLFGK+F + ++ S S C+I+QN R +Y+
Sbjct: 296 ECLSFYIVDIAEDF--NSGEIYLFGKIFTQNLSNMSNEQMELNESACIIIQNTYRSLYIY 353
Query: 262 PRSEHLKTKEPVSIAQ-VYSEFDQIATQYKILDFKSRKIEKKYAFNLPGV---PDLSEYL 317
P+ + + PV I Q V E I +Y I K + + + +AF GV P+ +L
Sbjct: 354 PKDAYPEHPNPVDICQSVAKEMISIRKKYNIPQIKMKPVIRNFAFTQSGVKYGPN-QPFL 412
Query: 318 EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS---- 373
+V Y +K P LP+++ G+TFSH+FG S +EN +++R+IKGPSWL+ + K S
Sbjct: 413 KVLYPSKNPNLPNNIKGETFSHIFGLNKSLVENFIIKRRIKGPSWLKIMKPYKVVSVGDG 472
Query: 374 RISWCKYEVQCNQMEKIRSKQGLI 397
R S CK E+ + + IR LI
Sbjct: 473 RRSQCKVEIHVSTWKNIRIWNALI 496
Score = 40.4 bits (93), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Query: 126 DENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDD--DIEDVPQKKEKHDK 183
+E +Y+EV E EY + +R++ D++ DD G GY +DG ++ D+ I + K+ + D+
Sbjct: 34 NEKIYDEVDEIEYQKICEERRKSDFVVDDDGIGYQDDGHDLLDNYYHIPEQDYKQNRIDE 93
Query: 184 RKK 186
+KK
Sbjct: 94 KKK 96
>gi|399216012|emb|CCF72700.1| unnamed protein product [Babesia microti strain RI]
Length = 1466
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 170/441 (38%), Positives = 256/441 (58%), Gaps = 36/441 (8%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++EFI+ + + Y + + ++ L L ++T + GN+ S +L RSERN+ LLLH FH
Sbjct: 687 MLEFIQSSSKFAYYSLDALVKMQALTLTRELTCIAGNLWSHSLACMRSERNDMLLLHEFH 746
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
YV+ + + K+K K KK +Y GGLVLEP G YD FI+L+DFNSL
Sbjct: 747 RLKYVISNS-FQKHKD--------TKSAATKKGSYEGGLVLEPILGLYDTFILLLDFNSL 797
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK-AL 580
YPSIIQE+N+CFTT + + D + E + + G+LP+ +K+LVE R +K ++
Sbjct: 798 YPSIIQEFNVCFTTAVISPIVDHNNNLQVETI---STEPGVLPAVLKRLVEMRATIKSSM 854
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK-------GR 633
M + N S Q +RQ ALKL ANS+YGCLG P SRF AQ LAA +T + GR
Sbjct: 855 MSEKN--SQKKAQLHVRQLALKLIANSLYGCLGSPYSRFHAQHLAAFITLQGKSVGYSGR 912
Query: 634 EILLNTKSLVEN-LNYEVIYGDTDSLMISCNV------NDYDSVFKIGNQIKSECNKLYK 686
IL++TK +E+ +VIYGDTDSLM++ N+ ++ ++ + NK Y+
Sbjct: 913 NILMDTKEKLESEFKLQVIYGDTDSLMLNTNIRHDGRLESFNKANQLATILSGSINKKYR 972
Query: 687 QLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746
+LE+++D ++ +LLLKKKKYAAL + K+ + KG+D VRRDWS L E G
Sbjct: 973 KLEIELDAIFARLLLLKKKKYAALKVIDYGQKKL--EIDSKGLDFVRRDWSLLTKEIGDK 1030
Query: 747 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----G 802
+++ IL ++ D +D+ ++ IHE + + ++D+ VPL ITKQL + PE
Sbjct: 1031 ILN-ILFTANFGDNGIDEAIEKIHELLTYLCGEMDSDRVPLESYTITKQLNRNPEEYSDA 1089
Query: 803 GKVCITQIRLSRNRRGRRRRR 823
+ + L N++G+R R
Sbjct: 1090 SALPHVSVALRVNKQGKRTIR 1110
Score = 70.1 bits (170), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 123/313 (39%), Gaps = 53/313 (16%)
Query: 117 VKHKYEFTADENVYEEVSEKEYTERVLK--RQEDDWIDDDGGDGYVEDGREIFDDDIEDV 174
+H +D +S YT+ K Q +DW DD+ E + I DD+ D+
Sbjct: 163 TEHDISLYSDNASQSSISRNVYTKNNQKYTHQANDWSDDNLICTRNERDKRIVTDDLYDI 222
Query: 175 PQKKEK------------HDKRKKNKNIQNPNAKDDSLP---LATDHEN----------- 208
E H +K I N + P L T EN
Sbjct: 223 HDSVEISNTDNIGIDQDFHIYDRKEYVIVEINDAEIDYPKVQLDTPDENINVKPTDIYLL 282
Query: 209 -KKVFRMFFLDAFEDIYKQPGTVYLFGKV----FVKENNSHSSCCVIVQNIDRKIYLLPR 263
K ++ LD ED G Y+FGK + ++ +SCC+IV R +Y R
Sbjct: 283 EDKFIGIYCLDLQEDF---KGNFYIFGKAITSPYTADSVDTASCCIIVTECMRDLYFKVR 339
Query: 264 SEH---LKTKEPVSIAQ-----------VYSEFDQIATQYKILDFKSRKIEKKYAFNLPG 309
+ ++ E V AQ Y E + + Y I + + +K N P
Sbjct: 340 MDMKFTIENSETVIDAQNSLYQKMIMKGFYKELQTLKSHYGIQKVMFKLVWRKILQNGPC 399
Query: 310 VPDLSEYLEVRYSAKCPAL-PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
+ +++V Y P + P SG ++ ++G +S +E ++RKIKGP WL+ +A
Sbjct: 400 GQQM--FIKVCYPYSSPEIRPEHYSGIHYTDIYGLNSSLVERFAVKRKIKGPCWLKIRDA 457
Query: 369 EKFPSRISWCKYE 381
+ IS C++E
Sbjct: 458 KLVKDNISRCQFE 470
>gi|390370603|ref|XP_001196001.2| PREDICTED: DNA polymerase alpha catalytic subunit, partial
[Strongylocentrotus purpuratus]
Length = 517
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 122/211 (57%), Positives = 162/211 (76%), Gaps = 11/211 (5%)
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG 653
YDIRQKALKLTANSMYGCLGF +SRF+A+PLAALVT+KGREIL++TK LV+ +N +VIYG
Sbjct: 1 YDIRQKALKLTANSMYGCLGFSHSRFYAKPLAALVTSKGREILMHTKELVQKMNLDVIYG 60
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
DTDS+MI+ N D+D+VFK+GN++K+E NKLY+ LE+DIDGV++ MLLLKKKKYAA+++
Sbjct: 61 DTDSIMINTNSTDHDTVFKLGNRVKTEVNKLYRLLEIDIDGVFQSMLLLKKKKYAAITVE 120
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR---LQNIH 770
+L +G + S+E+KG+D+VRRDW LA + G + I QIL S D R + NIH
Sbjct: 121 RLLDGTLKTSKEMKGLDIVRRDWCDLAKKVGSYAIDQIL--------SADSREVIVDNIH 172
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
H+ ++ + G +PL EI K LTKAP+
Sbjct: 173 SHLVELGEKVAAGTIPLDQYEINKGLTKAPQ 203
>gi|452823842|gb|EME30849.1| DNA polymerase alpha subunit A [Galdieria sulphuraria]
Length = 1356
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 166/415 (40%), Positives = 236/415 (56%), Gaps = 29/415 (6%)
Query: 404 EFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHE- 462
E + H++ ++ C+L L L++++ + G + S L R+ER E LL HAF E
Sbjct: 711 ELLDLNTCHAAVSFQLCCKLAALSLSLELAYISGYLWSNCLFFTRAERVEILLAHAFKEL 770
Query: 463 -KSYVLPDK-----------QYGKNKKEGEETGEANKGKGR---KKAAYSGGLVLEPKKG 507
+LPDK K E +ET +GR +KA Y GGLVLEPK+G
Sbjct: 771 FPKAILPDKLDRSKKELLQLVLKSEKAEEQETVTEKVVEGRTSKRKAKYEGGLVLEPKRG 830
Query: 508 FYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEI 567
YD I+ +DFNSLYPSIIQEYN+CFTT +L DS L E + H G+LP +
Sbjct: 831 LYDSLILQLDFNSLYPSIIQEYNLCFTTT---ILYDSSFQNL-EDVVIHTKKKGVLPLVL 886
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
+KLV+ RR+VK L KQ + Q +I Q ALKLTANS+YGCLG +SRF AQ LAAL
Sbjct: 887 EKLVQRRREVKDL-KQKTKDINRQQQLNIEQAALKLTANSVYGCLGAEHSRFGAQTLAAL 945
Query: 628 VTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ 687
VT GR L T + E +EVIYGDTDS+ ++ V + D+V + G +K E N+ ++
Sbjct: 946 VTQFGRVTLDKTIKIAERCGFEVIYGDTDSMFLNTGVKELDAVLEKGRVLKHEVNRNFRS 1005
Query: 688 LELDIDGVYKYMLLLKKKKYAALSISKLSN--GKMICSQEIKGVDVVRRDWSQLASEAGK 745
LE+D++ +Y MLLL+KK YAA+ + + G+ I E+KGV++VR DW + E
Sbjct: 1006 LEIDVEAIYTRMLLLQKKHYAAMRLVDPVSRPGETIL--EVKGVEMVRHDWCPASRELSL 1063
Query: 746 FVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
V+ +L + + + + + +++++R G VPL ITK LT+ P
Sbjct: 1064 QVVELLLSSKFEREECVHKVISCLRFYIEQVR----QGNVPLEKFVITKSLTQKP 1114
Score = 67.4 bits (163), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 89/360 (24%), Positives = 153/360 (42%), Gaps = 80/360 (22%)
Query: 186 KNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSH- 244
++ ++QN D S + EN ++ R F+ D E + +++LFGK E++
Sbjct: 244 EHNSVQNIFQADSSHYVPCYTENDEI-RFFWYDIEEAVSAGGSSLFLFGKALFYESDDKL 302
Query: 245 -----------SSCCVIVQNIDRKIYLLPRSEHLKT------KEPVSI--AQVYSEFDQI 285
+ C+ + N+DR +Y PR + L+ + V + +QV+ E QI
Sbjct: 303 QQKDGKSRQILKNVCLHLPNLDRVLYFAPRWDTLQQDSIQNENDAVELIRSQVFPEVQQI 362
Query: 286 ATQYKILDFKSRKIEKKYAF-NLPGVPDL-SEYLEVRYSAKCPALPSDLS---GDTFSHV 340
T + F ++ + + + F + P VP + YL+V+Y K +L+ G TF+ +
Sbjct: 363 TTPL-VPRFFAKPVTRIHPFLDDPRVPKYDAYYLKVKYPFKYAPPSKELAIQGGKTFNRI 421
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEA---EKFPSRISWC------------------- 378
FGT T+ +E LLL++K+KGP WL A P + C
Sbjct: 422 FGTTTTAIERLLLKKKLKGPGWLRLKNATISSNMPCSLKCCLQVENIENIVLEGKNEVPV 481
Query: 379 ------KYEVQC----------NQMEKIRSKQGLIYLIGIVEFIKFTMLHSS---YIIKI 419
+ + C + +I + G+ Y EF + ++LHS+ YI I
Sbjct: 482 EYSTALTFSILCLSFVFQWNEETSLHEIIAVTGIFYPFIPFEFFQSSVLHSTLQKYIFSI 541
Query: 420 MCEL---NVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEK-SYVLPDKQYGKN 475
+ L + P ++T+ G++ + NE LLH F EK S PD G +
Sbjct: 542 IRPLKNQSFPPEFEKMTSRSGHI--------ETVANEAQLLHNFLEKLSSADPDIILGHD 593
>gi|85000361|ref|XP_954899.1| DNA polymerase alpha, catalytic subunit [Theileria annulata strain
Ankara]
gi|65303045|emb|CAI75423.1| DNA polymerase alpha, catalytic subunit, putative [Theileria
annulata]
Length = 1074
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 156/366 (42%), Positives = 222/366 (60%), Gaps = 34/366 (9%)
Query: 442 RTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLV 501
+++M RSER +FLL+H F+ Y+L D + K K++ ++ +Y GGLV
Sbjct: 585 QSIMMCRSERIDFLLMHEFYRNKYIL-DNVFNKFKEQLDDM-----------KSYEGGLV 632
Query: 502 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTG 561
EP G YD FI+L+DFNSLYPSIIQEYNICFTT + D D + Q + G
Sbjct: 633 FEPISGLYDNFILLLDFNSLYPSIIQEYNICFTTTVAK---DEDNVVI-------QDNVG 682
Query: 562 ILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFA 621
+LPS +K+LVE R +K ++K + +Q RQ ALKL ANS+YGCLG SRF
Sbjct: 683 VLPSILKRLVELRLNIKNIIKGEK-NEVRRVQLSTRQLALKLIANSIYGCLGSNFSRFHC 741
Query: 622 QPLAALVTAKGREILLNTKSLVENL-NYEVIYGDTDSLMISCNVND------YDSVFKIG 674
+ +A+ +T GRE+L +TK VEN+ N +VIYGDTDSLMI+ N+ D Y++ ++
Sbjct: 742 KYIASYITKLGRELLRSTKEKVENVFNLQVIYGDTDSLMINTNIRDDGNLANYNAANQLA 801
Query: 675 NQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRR 734
N + + NK +K+LE+ ID V+ +LLLKKKKYA+L + + G+ ++EIKG+D +RR
Sbjct: 802 NNLVTFINKSHKKLEIGIDAVFTRLLLLKKKKYASLKVIEYETGQF--AREIKGLDFIRR 859
Query: 735 DWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITK 794
DWS L E G ++ IL+ Y +D +Q IH + + L+N + L+ ITK
Sbjct: 860 DWSLLTKEIGNKLLDIILNSNYYN--GVDGIVQEIHSTLINLNDQLNNNSIELSKFLITK 917
Query: 795 QLTKAP 800
QLTK P
Sbjct: 918 QLTKNP 923
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 34/209 (16%)
Query: 196 KDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNID 255
K DSL L D + LD ED G ++LFG++ SC V V+N+
Sbjct: 145 KPDSLTLTED------LAFYLLDLCED----GGYLHLFGRM-RSSGTETESCLVTVKNMY 193
Query: 256 RKIYLLPRSEHL----------------KTKEPVSIAQV----YSEFDQIATQYKILDFK 295
R ++ PR L + +P+ Q+ ++EF+ + Y I K
Sbjct: 194 RTLFFKPRMNLLFNELGELVDSAAEGVINSSDPLYERQIMMNFFNEFEVVRKDYGIKKIK 253
Query: 296 SRKIEKKYAFNLPGVPDLSEYLEVRYSAKC-PALPSDLSGDTFSHVFGTKTSFLENLLLE 354
+ +++ P Y++V Y + P LSG + V+ ++ +E LL+
Sbjct: 254 YKLVKRSLLTYGPTKQQF--YIKVCYPFQFQPLNKQHLSGKYYEDVYHNNSTQVELFLLK 311
Query: 355 RKIKGPSWLEFPEAEKFPSRISWCKYEVQ 383
R+IKGP+WL + +K + +S+CK EV+
Sbjct: 312 RRIKGPTWLRISDYQKSANSLSYCKVEVE 340
>gi|71027153|ref|XP_763220.1| DNA polymerase alpha [Theileria parva strain Muguga]
gi|68350173|gb|EAN30937.1| DNA polymerase alpha, putative [Theileria parva]
Length = 1451
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 163/416 (39%), Positives = 234/416 (56%), Gaps = 46/416 (11%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK 474
+++K+ +LPL ++T + GN SR++ RSER +FLL+H F+ Y+L D + K
Sbjct: 650 HLLKLHYSFQILPLTKELTIIAGNTWSRSIQCARSERIDFLLMHEFYRNKYIL-DNVFNK 708
Query: 475 NKKEGEET----GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYN 530
K++ T + +Y GGLV EP G YD FI+L+DFNSLYPSIIQEYN
Sbjct: 709 FKEQSITTLGFYFYIHFTHLDDTKSYEGGLVFEPISGLYDNFILLLDFNSLYPSIIQEYN 768
Query: 531 ICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 590
ICFTT + I + G+LPS +K+LVE R +K ++K +
Sbjct: 769 ICFTTTVANGEESVVILD----------NVGVLPSILKRLVELRLNIKNIIKGEK-NETR 817
Query: 591 LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG------------------ 632
+Q RQ ALKL ANS+YGCLG SRF + +A+ +T G
Sbjct: 818 RVQLSTRQLALKLIANSIYGCLGSNFSRFHCKYIASYITKLGTASRAGNYPIPHFTTYLH 877
Query: 633 -REILLNTKSLVENL-NYEVIYGDTDSLMISCNVND------YDSVFKIGNQIKSECNKL 684
RE+L +TK VEN+ N +VIYGDTDSLMI+ N+ D Y++ ++ N + + NK
Sbjct: 878 SRELLRSTKEKVENVFNLQVIYGDTDSLMINTNIRDDGNLTNYNAANQLANNLVTFINKS 937
Query: 685 YKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAG 744
+K+LE+ ID V+ +LLLKKKKYA+L + +G+ +EIKG+D +RRDWS L E G
Sbjct: 938 HKKLEIGIDAVFTRLLLLKKKKYASLKVVDYGSGQF--EREIKGLDFIRRDWSLLTKEIG 995
Query: 745 KFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+++ IL+ Y +D +Q IH + + L+N + L+ ITKQLTK P
Sbjct: 996 NKLLNIILNSNYYD--GVDGIVQEIHSTLINLNEQLNNQSIELSKFLITKQLTKNP 1049
Score = 63.9 bits (154), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 34/218 (15%)
Query: 195 AKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNI 254
+ D+L L+ D + LD ED G + LFG++ ++ SC V V+N+
Sbjct: 232 TQPDALTLSED------LAFYLLDLCED----GGYLQLFGRIRTSGTDT-ESCMVTVKNM 280
Query: 255 DRKIYLLPRSEHL----------------KTKEPVS----IAQVYSEFDQIATQYKILDF 294
R ++ PR + L K+ +P+ + ++EF+ I Y I
Sbjct: 281 YRSLFFKPRMDLLFNELGEVVETASDGVIKSSDPLYERHLMMNFFNEFEVIRKDYGIKKI 340
Query: 295 KSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALP-SDLSGDTFSHVFGTKTSFLENLLL 353
K + +++ P P+ Y++V Y + L LSG + V+ ++ +E LL
Sbjct: 341 KYKLVKRSLLTYGPTKPEF--YIKVCYPFQFQILNKQHLSGKFYEDVYHNHSTQVELFLL 398
Query: 354 ERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIR 391
+R+IKGP+WL + +K +S+CK E++ + + ++
Sbjct: 399 KRRIKGPTWLRLTDYQKSTDSLSYCKVEIEIDSHKNVQ 436
>gi|449016652|dbj|BAM80054.1| DNA polymerase alpha, catalytic subunit [Cyanidioschyzon merolae
strain 10D]
Length = 1527
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 161/451 (35%), Positives = 228/451 (50%), Gaps = 93/451 (20%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS-YVLPDKQYGK------- 474
L V+PL ++ ++CG +T++G R+ER E+LLLH H YV PD+ G+
Sbjct: 770 LAVIPLTNELASICGYPWGKTMLGNRAERIEYLLLHEIHRSGKYVAPDRSSGQRASIRPK 829
Query: 475 -----------------------NKKEGEETGEANKGKG--------RKKAAYSGGLVLE 503
+ + G T +G R+K AY GG VLE
Sbjct: 830 RPSFDPTAQASADKRLDAARTPSSTQRGASTPTTTEGSALELASSAKRRKPAYQGGYVLE 889
Query: 504 PKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGIL 563
PK+G Y ++ +DF+SLYPSIIQEYNI FTT+ + DS+ L LP+H + GIL
Sbjct: 890 PKRGLYGTCVLQLDFSSLYPSIIQEYNIDFTTVTL----DSEGNAL---LPKHSNELGIL 942
Query: 564 PS-------EIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPN 616
P+ +++ E+ R + ++Q Q RQ ALKLTAN++YGCLG+ +
Sbjct: 943 PTVLRRLVQRRRQVREAARNESSPVRQ--------QQLHTRQLALKLTANALYGCLGYVH 994
Query: 617 SRFFAQPLAALVTAKGREILLNTKSLVE---------------------NLNYEVIYGDT 655
SRF + LA L+T GRE L T L E + VIYGDT
Sbjct: 995 SRFHIRELAELITRTGRETLERTVELAEQVLLRKLDDLVAASNVPDRASGVQPRVIYGDT 1054
Query: 656 DSLMISCNVN-DYDSV---FKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALS 711
DS+ I + DSV ++G+ I+ E NK Y LE++I+ +Y MLLL KKKYAAL
Sbjct: 1055 DSIFIDSGIPFSSDSVQRIMELGHAIRREVNKQYHTLEIEIEALYVRMLLLNKKKYAALK 1114
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
++ G S+E+KG++VVR DW L + AG F + QILD + D I +
Sbjct: 1115 Y-QIDTGSF--SKEVKGIEVVRHDWCALVAAAGNFALDQILDPTCVATEAKD----RICK 1167
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
++ ++ T + G V L ITKQLT P+
Sbjct: 1168 YLSELATRMRQGRVDLDQFVITKQLTHDPDA 1198
Score = 87.0 bits (214), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 125/285 (43%), Gaps = 37/285 (12%)
Query: 135 EKEYTERVLKRQEDDWIDDDGGDGY-VEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQN- 192
+ E+ R QE W + E+ E+ D D + + + + + ++ +N
Sbjct: 242 DHEHDPRTPSTQEKSWTTLQAANASDSENDMEVNDVDADLLLDRVLELEAEYAHEATENG 301
Query: 193 PNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQ 252
A + LP + F LD E + K V++FG+ + E +S ++ CV V
Sbjct: 302 VTAVEGDLP----GDRVPALTFFALDMQEILDK----VFVFGRALLPETSSSTAVCVQVC 353
Query: 253 NIDRKIYLLPR--------------------SEHLKTKEPVS----IAQVYSEFDQIATQ 288
I+R+I+ LPR SE P+S + VY E +
Sbjct: 354 GIEREIFFLPRMYVDCPDDEQATPRPYPILASEQEPRLAPISEGIAFSCVYEEVKSVLLA 413
Query: 289 YKILDFKSRKIEKKYAFNLPGV--PDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTS 346
I +F +R+ E+ + N +++ L VRY AK AL + L G TFS + G++ S
Sbjct: 414 RGITEFTARREERCFLTNQIDRRRAEVTSCLRVRYPAKYRALETALEGQTFSQIVGSRNS 473
Query: 347 FLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIR 391
LEN +LER + GP W++ A + + IS C++ + + + R
Sbjct: 474 PLENFILERCVPGPCWVQVSNASRV-TGISSCRWSLNVDSPAQFR 517
>gi|242223777|ref|XP_002477462.1| predicted protein [Postia placenta Mad-698-R]
gi|220722934|gb|EED77339.1| predicted protein [Postia placenta Mad-698-R]
Length = 559
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 121/242 (50%), Positives = 158/242 (65%), Gaps = 10/242 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ F++ L + Y + + ++ +LPL Q+TN+ GN ++TL GGR+ERNE++LLH FH
Sbjct: 320 LLTFVRHCELDAHYQMALAAKVQILPLTRQLTNLAGNSWNKTLNGGRAERNEYILLHEFH 379
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKG-----RKKAAYSGGLVLEPKKGFYDKFIILM 516
Y+ PDK +GK E+ + +G KK Y GGLV EPK+G +DK+I++M
Sbjct: 380 RLKYICPDKLWGKKAATAEKEAHDDDAEGGKVTKSKKDKYKGGLVFEPKRGLWDKYILVM 439
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQ---VDTGILPSEIKKLVES 573
DFNSLYPSIIQEYNI FTT V +D E +PE V G+LP I LV
Sbjct: 440 DFNSLYPSIIQEYNIDFTT--VDRAEDEVRADGEEAIPEPPSPGVGQGVLPRLIATLVNR 497
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RRQVK+LMK + L+Q+DI+Q ALKLTANSMYGCLGF SRF+A+PLAAL T KGR
Sbjct: 498 RRQVKSLMKDRKATQAQLLQWDIKQMALKLTANSMYGCLGFEYSRFYARPLAALTTFKGR 557
Query: 634 EI 635
EI
Sbjct: 558 EI 559
Score = 69.7 bits (169), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 294 FKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLL 352
++ + +++KYAF VP S++ +V Y P LPS++S S VFGT T+ E L+
Sbjct: 2 WRGKLVKRKYAFGEKDVPKGESQWFKVVYGFDEPQLPSNISSPNISRVFGTNTTAFELLV 61
Query: 353 LERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKI 390
L+RKI GP WL+ E + +SWCK E + + I
Sbjct: 62 LKRKIMGPCWLQVKEPKLEHKGVSWCKVEATVSNPKDI 99
>gi|167375936|ref|XP_001733786.1| DNA polymerase alpha catalytic subunit [Entamoeba dispar SAW760]
gi|165904960|gb|EDR30082.1| DNA polymerase alpha catalytic subunit, putative [Entamoeba dispar
SAW760]
Length = 1132
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 146/394 (37%), Positives = 221/394 (56%), Gaps = 43/394 (10%)
Query: 412 HSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS--YVLPD 469
+S +IK+ ++N + + ++TN+ GN+ S + G R+ER E+LLLH F +++ Y+LPD
Sbjct: 527 NSRLVIKLCNQMNAIAMTKELTNLAGNIWSHSFFGKRAERVEYLLLHEFIKQTTLYILPD 586
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K++G+ G + Y+GGLVLEP K FY I+L+DF SLYPSII E+
Sbjct: 587 KKFGE---------------GSQHKKYAGGLVLEPVKDFYSDPILLIDFKSLYPSIIMEF 631
Query: 530 NICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+CF + + + +LP IKKLV RRQ+ + M++ +
Sbjct: 632 GVCFLNSQLG----------------GENNKSMLPEIIKKLVMRRRQIVSEMEKLGDKDE 675
Query: 590 LL-MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNY 648
+ Q + +Q ++K+ NS+YGCLGF SRF+ Q +A +T KGR IL NT V+ ++
Sbjct: 676 IKKAQLNTQQLSVKVMTNSIYGCLGFKGSRFYCQKIAEWITGKGRTILTNTCEQVQKMDI 735
Query: 649 EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYA 708
+VIYGDTDSLM+ + GN + ++ NK YK LE++ID +++ +LLL+KK+YA
Sbjct: 736 QVIYGDTDSLMVRPPKISLKDLKNFGNNLCAQINKSYKSLEIEIDAIFEKLLLLRKKRYA 795
Query: 709 ALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 768
A I +E+KG+DVVRR+W L+ E G + I IL +D L Q
Sbjct: 796 ATMILDGGKK----KKELKGLDVVRREWCPLSKEIGYYCIDLIL-----SDPGLVKMQQI 846
Query: 769 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ + K I L +G V + L ITK L K P+
Sbjct: 847 LETYFKNIAEKLRSGKVDIHQLVITKGLNKDPQS 880
Score = 42.7 bits (99), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 21/174 (12%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL-KTKEPV 273
FF + G V+L GKV K +N SC ++V+ I R +++ P+ E + K KE +
Sbjct: 132 FFYIDLVSVTTMKGCVFLIGKV--KGDNGFISCSILVKGIRRVLFVEPKKEFINKPKEVI 189
Query: 274 SIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRY----SAKCPALP 329
+++ YK + + K+ N D E LE + +C
Sbjct: 190 ---------EELKKYYKSTNVVFAEATKEMIINPQDTNDNKELLEKKVIKGIQVECYFDD 240
Query: 330 SDL--SGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRI---SWC 378
+L +G T+ V+ + E L I GPSW++F + + SWC
Sbjct: 241 KELNDTGKTYEKVYQKTLTCEEVFLSNYSIFGPSWIKFNGLTVVRTSVEQKSWC 294
>gi|67484306|ref|XP_657373.1| DNA polymerase alpha catalytic subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56474627|gb|EAL51989.1| DNA polymerase alpha catalytic subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449706283|gb|EMD46161.1| DNA polymerase alpha catalytic subunit, putative [Entamoeba
histolytica KU27]
Length = 1132
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 147/398 (36%), Positives = 227/398 (57%), Gaps = 51/398 (12%)
Query: 412 HSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS--YVLPD 469
+S +IK+ ++N + + ++TN+ GN+ S + G R+ER E+LLLH F +++ Y+LPD
Sbjct: 527 NSRLVIKLCNQMNAIAMTKELTNLAGNIWSHSFFGKRAERVEYLLLHEFIKQTTLYILPD 586
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K++G+ G + Y+GGLVLEP K FY I+L+DF SLYPSII E+
Sbjct: 587 KKFGE---------------GSQHKKYAGGLVLEPVKDFYSDPILLIDFKSLYPSIIMEF 631
Query: 530 NICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+CF + + + +LP IKKLV RRQ+ + M++ +
Sbjct: 632 GVCFLNSQLG----------------GENNKSMLPEIIKKLVMRRRQIVSEMERLGDKDE 675
Query: 590 LL-MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNY 648
+ Q + +Q ++K+ NS+YGCLGF SRF+ Q +A +T+KGR IL NT V+ ++
Sbjct: 676 IKKAQLNTQQLSVKVMTNSIYGCLGFKGSRFYCQKIAEWITSKGRTILTNTCEQVQKMDI 735
Query: 649 EVIYGDTDSLMI---SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
+VIYGDTDSLM+ ++ND + GN + ++ NK YK LE++ID +++ +LLL+KK
Sbjct: 736 QVIYGDTDSLMVRPPKISMNDLKT---FGNNLCAQINKSYKSLEIEIDAIFEKLLLLRKK 792
Query: 706 KYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
+YAA I +E+KG+DVVRR+W L+ E G + I IL + +
Sbjct: 793 RYAATMILDGGKK----KKELKGLDVVRREWCPLSKEIGYYCIDLILSDPGLV------K 842
Query: 766 LQNIHE-HMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+Q I E + K + L +G V + L ITK L K P+
Sbjct: 843 MQQILEIYFKNMAEKLRSGKVDIHQLVITKGLNKDPQS 880
Score = 43.9 bits (102), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 92/221 (41%), Gaps = 25/221 (11%)
Query: 172 EDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRM----FFLDAFEDIYKQP 227
E + +K E ++K I+ P ++P TD K + FF +
Sbjct: 85 EMIKEKTEITISKEKAPPIKMPKKFILNVPKKTDTNVMKNVPIQNLDFFYIDLVSVTTMK 144
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL-KTKEPVSIAQVYSEFDQIA 286
G V+L GKV K +N SC ++V+ I R +++ P++E + K KE + +++
Sbjct: 145 GCVFLIGKV--KGDNGFISCSILVKGIRRVLFVEPKNEFINKPKEVI---------EELK 193
Query: 287 TQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRY----SAKCPALPSDL--SGDTFSHV 340
YK + + K+ N D E LE + +C +L +G T+ V
Sbjct: 194 RHYKSTNVVFVEATKEMIINPQDTNDNKELLEKKVIKGIQVECYFDDKELNDTGKTYEKV 253
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRI---SWC 378
+ + E L I GPSW++F + + SWC
Sbjct: 254 YQKTLTCEEVFLSNYSIFGPSWIKFNGLTVVRTSVEQKSWC 294
>gi|407042202|gb|EKE41203.1| DNA polymerase alpha catalytic subunit, putative [Entamoeba
nuttalli P19]
Length = 1132
Score = 230 bits (586), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 147/397 (37%), Positives = 225/397 (56%), Gaps = 49/397 (12%)
Query: 412 HSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS--YVLPD 469
+S +IK+ ++N + + ++TN+ GN+ S + G R+ER E+LLLH F +++ Y+LPD
Sbjct: 527 NSRLVIKLCNQMNAIAMTKELTNLAGNIWSHSFFGKRAERVEYLLLHEFIKQTTLYILPD 586
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K++G+ G + Y+GGLVLEP K FY I+L+DF SLYPSII E+
Sbjct: 587 KKFGE---------------GSQHKKYAGGLVLEPVKDFYSDPILLIDFKSLYPSIIMEF 631
Query: 530 NICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+CF + + + +LP IKKLV RRQ+ + M++ +
Sbjct: 632 GVCFLNSQLG----------------GENNKSMLPEIIKKLVMRRRQIVSEMERLGDKDE 675
Query: 590 LL-MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNY 648
+ Q + +Q ++K+ NS+YGCLGF SRF+ Q +A +T KGR IL NT V+ ++
Sbjct: 676 IKKAQLNTQQLSVKVMTNSIYGCLGFKGSRFYCQKIAEWITGKGRTILTNTCEQVQKMDI 735
Query: 649 EVIYGDTDSLMI---SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
+VIYGDTDSLM+ ++ND + GN + ++ NK YK LE++ID +++ +LLL+KK
Sbjct: 736 QVIYGDTDSLMVRPPKISMNDLKT---FGNNLCAQINKSYKSLEIEIDAIFEKLLLLRKK 792
Query: 706 KYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
+YAA I +E+KG+DVVRR+W L+ E G + I IL +D L
Sbjct: 793 RYAATMILDGGKK----KKELKGLDVVRREWCPLSKEIGYYCIDLIL-----SDPGLVKM 843
Query: 766 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
Q + + K + L +G V + L ITK L K P+
Sbjct: 844 QQTLEIYFKNMAEKLRSGKVDIHQLVITKGLNKDPQS 880
Score = 44.7 bits (104), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 19/173 (10%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS 274
FF + G V+L GKV K +N SC ++V+ I R +++ P++E + + V
Sbjct: 132 FFYIDLVSVTTMKGCVFLIGKV--KGDNGFISCSILVKGIRRVLFVEPKNEFVNKPKEV- 188
Query: 275 IAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRY----SAKCPALPS 330
+++ YK + + K+ N D E LE R +C
Sbjct: 189 -------IEELKRHYKSTNVVFVEATKEMIINPQDTNDNKELLEKRVIKGIQVECYFDDK 241
Query: 331 DL--SGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRI---SWC 378
+L +G T+ V+ + E L I GPSW++F + + SWC
Sbjct: 242 ELNDTGKTYEKVYQKTLTCEEVFLSNYSIFGPSWIKFNGLTVVRTSVEQKSWC 294
>gi|2865226|gb|AAC38856.1| DNA polymerase alpha, partial [Paraurostyla viridis]
Length = 966
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 129/265 (48%), Positives = 170/265 (64%), Gaps = 27/265 (10%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
I++M L+V+PL Q+TN+ GN+ R+L R+ERNE LLLH F +K ++LPDK+ NK
Sbjct: 703 IQLMFHLSVIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPDKKQLTNK 762
Query: 477 K--------EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQE 528
+ E E+ + KG RKKA Y+GGLV+EPK GFYD I+L+DFNSLYPSIIQE
Sbjct: 763 ELKRGLFGEEDEQVDDKKKGGKRKKAQYAGGLVIEPKAGFYDNIILLLDFNSLYPSIIQE 822
Query: 529 YNICFTTI---PVRMLQDSDI------------TTLCEYLPEHQVDT--GILPSEIKKLV 571
YN+CFTT+ P + +DI LP+ T +LP+ ++ LV
Sbjct: 823 YNLCFTTVNRRPTKNFNGTDIKNEFKSEEDEENEEEQVELPDKNTKTNDAVLPNVLRDLV 882
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
+ RR VK MK ++ L Q +IRQKA+KLTANSMYGCLGF +SRF A+ +AAL+T
Sbjct: 883 QKRRAVKEKMKSEKDATK-LQQLEIRQKAIKLTANSMYGCLGFQSSRFHAKAIAALITRT 941
Query: 632 GREILLNTKSLVEN-LNYEVIYGDT 655
GRE LL TK + EN L + V+YGDT
Sbjct: 942 GRETLLKTKDIAENKLGFNVVYGDT 966
Score = 108 bits (271), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 18/232 (7%)
Query: 169 DDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPG 228
DD + + Q++ ++ + K N D LPL D F+ DA E+ Q
Sbjct: 244 DDWQKIKQQQMQNQEALKIDQNATLNQYDYPLPLNPD----GTLSFFWFDAHEENNGQ-- 297
Query: 229 TVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLP------RSEHLKTKEPVSIAQVYSEF 282
+Y+FGK++ E S+ SC + V + R++Y LP RS K +E + ++ E
Sbjct: 298 DIYIFGKIYQPEVKSYVSCALKVNGMQREMYALPKIKNKARSAMSKEEEDKQVMNIFHEL 357
Query: 283 DQIATQ--YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHV 340
D I + +I +K + + +KYAF +P + L+V+Y P+LP+ L+G++F +
Sbjct: 358 DDIRKKRFQQITKWKCKPVMRKYAFEMPIQHGEHKLLKVKYDCTMPSLPAGLTGNSFECL 417
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCN---QME 388
FG S LE L+L+RKIKGP W+ +K + +WC+ E+ N QME
Sbjct: 418 FGANQSMLELLILKRKIKGPCWITLKSPQKVTDFKKTWCRQEIFDNDPKQME 469
>gi|300121996|emb|CBK22570.2| unnamed protein product [Blastocystis hominis]
Length = 780
Score = 229 bits (583), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 160/406 (39%), Positives = 239/406 (58%), Gaps = 33/406 (8%)
Query: 406 IKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSY 465
I+ ++ ++ ++M L ++PL+ QI+ + G R L RSER E+ LLH F +K++
Sbjct: 178 IQSNLIAANAAAQLMFSLLIIPLSHQISCISGLPWGRCLRSNRSERVEYYLLHGFRQKNF 237
Query: 466 VLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSI 525
+ PDKQ K K++ ++K+ Y GGLVLEPK Y+ F++++DFNSLYPSI
Sbjct: 238 ITPDKQ-RKVKQQ------------KRKSKYEGGLVLEPKADLYEDFVLVLDFNSLYPSI 284
Query: 526 IQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSE----------IKKLVESRR 575
IQEYN+C+TT+ ++ + + + + + E I+ LV RR
Sbjct: 285 IQEYNLCYTTVKREKKEEENENEKENEKEKEKEERKEVEKEEGEDEDGDLLIRYLVTKRR 344
Query: 576 QVKALMKQPNLSSDLLM--QYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
+VK LMK+ S+ L Q DIRQ ALK+ ANSMYGCLGF NSRF A +A+ VT GR
Sbjct: 345 EVKGLMKK---ESNPLKRKQLDIRQLALKILANSMYGCLGFTNSRFCATAIASTVTRVGR 401
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
IL NT+ L E Y VIYGDTDS+MI+ DY +IG ++K++ NK YK L++DID
Sbjct: 402 YILQNTRLLAEKEGYSVIYGDTDSIMINTATRDYQQTMEIGRELKNKINKKYKYLQIDID 461
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
V++ MLLLKKKKYAA+ + + ++ +E +G+D+VRRDWS L +AG ++ +
Sbjct: 462 YVFQKMLLLKKKKYAAVKVISVEGTRLTTQRETRGIDLVRRDWSILTKDAGSKLLDILFS 521
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
E+S +++ ++ + + N VP EIT LT++
Sbjct: 522 EESRDEFA-----DQFGRYLTDLAASMRNNLVPYEKYEITMSLTRS 562
>gi|440293483|gb|ELP86600.1| DNA polymerase, putative [Entamoeba invadens IP1]
Length = 1126
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 144/381 (37%), Positives = 216/381 (56%), Gaps = 43/381 (11%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEK--SYVLPDKQYGKNKKEGE 480
+NV+ + +TN+ GN+ S TL G R+ER E+LLLH F ++ +V+PDK+Y +
Sbjct: 537 MNVIAMTKVLTNLAGNIWSHTLNGQRAERVEYLLLHEFMKRRSEFVIPDKRYLE------ 590
Query: 481 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
G++ Y+GGLVLEP K FY+ ++L+DF SLYPSII E+ +CFT +
Sbjct: 591 ---------GQQHKKYAGGLVLEPVKQFYNDPVLLIDFKSLYPSIIMEFAVCFTNNTI-- 639
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM-KQPNLSSDLLMQYDIRQK 599
D + C +LP I KLV+ RR + A M K + + Q + Q
Sbjct: 640 ---GDKSGKC-----------VLPEIISKLVKKRRALVAEMEKLGSNEENKKAQMNTEQL 685
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
++K+ NS+YGCLGF RF+ Q +A +T KGR+IL T V+ Y V+YGDTDSLM
Sbjct: 686 SVKVMTNSIYGCLGFKGGRFYCQKIAEWITKKGRQILTATYEQVQESGYSVVYGDTDSLM 745
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGK 719
+ +K+G ++ N Y LE++ID V+ +LLLKKK+YAA+ +++ NG+
Sbjct: 746 VKPETRSLKETYKVGEELCKLINNKYTSLEIEIDAVFSKLLLLKKKRYAAIMVNE--NGE 803
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
+E+KG+DVVRR+W + E G + I+ IL ++ + L ++ + KKI +D
Sbjct: 804 T--KRELKGLDVVRREWCLFSKEIGNYCINLILKDEGK-----EKTLHDLENYFKKIASD 856
Query: 780 LDNGFVPLTLLEITKQLTKAP 800
L G V + L I K L+K P
Sbjct: 857 LRGGKVDIAKLVIVKGLSKDP 877
>gi|2865238|gb|AAC38862.1| DNA polymerase alpha, partial [Urostyla grandis]
Length = 927
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 179/276 (64%), Gaps = 28/276 (10%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++ I+ T S +M L+V+PL Q+T++ GN+ R+L R+ERNE LLLH F+
Sbjct: 656 LLKLIEHTERDSYLTFSLMQHLSVVPLTKQLTSIAGNLWYRSLQNARAERNEMLLLHEFY 715
Query: 462 EKSYVLPDKQ-YGKNKKEGEE--------TGEANKGKGRKKAAYSGGLVLEPKKGFYDKF 512
K Y+ PDK + K+KK+ E+ EANK K RKKA YSGGLV+EPK GFYD
Sbjct: 716 GKKYLCPDKAPFSKDKKQFEDYENENLFGNEEANKKK-RKKAQYSGGLVIEPKAGFYDTI 774
Query: 513 IILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEYLPEHQVDT--------- 560
I+L+DFNSLYPSIIQEYN+CFTT+ P + +SDI + + + +V+
Sbjct: 775 ILLLDFNSLYPSIIQEYNLCFTTVNRRPSKNYDNSDIKSKQDENIDDEVELPDKGNTYKD 834
Query: 561 GILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSR 618
ILP+ +K LV+ R+ VK +K+ +D + Q +IRQKA+KLTANSMYGCLGF +SR
Sbjct: 835 AILPNVLKNLVQKRKIVKEQLKK---ETDPVKQQQLEIRQKAIKLTANSMYGCLGFSSSR 891
Query: 619 FFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYG 653
F A+ +AAL+T GRE LL TK + EN L + V+YG
Sbjct: 892 FHAKAIAALITKTGRETLLKTKDIAENKLGFNVVYG 927
Score = 103 bits (257), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 16/197 (8%)
Query: 198 DSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRK 257
DS PL + + K + DA E+ V+LFGKV+ E + SC + V + R
Sbjct: 239 DSYPLPVNKD--KELSLLLFDAHEE--NMGLDVFLFGKVYQPELKQYVSCSLKVNGMQRI 294
Query: 258 IYLLP-------RSEHLKTKEPVSIAQVYSEFDQIATQ--YKILDFKSRKIEKKYAFNLP 308
+Y LP R+E K +E +++SE D I I +K + ++KYAF +P
Sbjct: 295 VYALPKVSKNKSRAELTKEEEQEMALKIFSELDGIRKNKFPSISQWKCKVAKRKYAFEMP 354
Query: 309 GVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
+ L+++Y + P LP++L+G TF +F T+ S LE LLL++KIKGP W+
Sbjct: 355 IHHGEHQLLKIKYDSTMPPLPANLTGSTFECLFNTQQSMLELLLLKQKIKGPCWITLKNV 414
Query: 369 EKF---PSRISWCKYEV 382
++ ++ SWCK+++
Sbjct: 415 QQITQASNKRSWCKHDL 431
>gi|154418827|ref|XP_001582431.1| DNA polymerase family B containing protein [Trichomonas vaginalis
G3]
gi|121916666|gb|EAY21445.1| DNA polymerase family B containing protein [Trichomonas vaginalis
G3]
Length = 1367
Score = 226 bits (577), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 142/392 (36%), Positives = 215/392 (54%), Gaps = 38/392 (9%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ I+F ++ + K+M + N+L + +++ + G + +TL S R E +LLH+F
Sbjct: 619 VISLIEFFERDTNILTKLMEKTNLLEITFRLSQISGLLWCKTLKSKPSYRCESILLHSFK 678
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
EK++VLPDK+ +A+ K Y G VL+PKKGFYD I+L+DF SL
Sbjct: 679 EKNFVLPDKK-----------QKADFAPKSKLGKYRGATVLQPKKGFYDTIIVLLDFTSL 727
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT---GILPSEIKKLVESRRQVK 578
YPSII EYN+CFTT+ R E V+ GILP ++ L + R ++K
Sbjct: 728 YPSIISEYNLCFTTVDKRNPN-----------SEEAVNCGRKGILPEIMENLTKMRIELK 776
Query: 579 ALMKQPNLSSDLLMQYD---IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREI 635
M N D +D I+Q+A+K +NS+YG LGF SRF + +AAL+T +GR +
Sbjct: 777 NKM---NTLQDDKFNFDRFLIKQQAIKSLSNSIYGYLGFSLSRFASNEIAALITERGRFV 833
Query: 636 LLNTKSLVENLN-YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDG 694
L T VE+L + VIYGDTDS+M++ + KI N I + K YK L+L + G
Sbjct: 834 LQKTVETVESLGKFSVIYGDTDSVMVNTGTKSVEEAKKIANDISEKVTKQYKFLKLTVSG 893
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL-- 752
++ MLL+ KKKYA + + C +E+KG+D+VRRDW QL FV+ Q++
Sbjct: 894 LFTKMLLVAKKKYAV----TVYDDDNKCHREVKGLDMVRRDWCQLTKYLSSFVLDQMMNN 949
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGF 784
D++S T + N+ + ++K D N
Sbjct: 950 DDRSLTVRNCLSEFHNVAKLLRKSNNDEQNSL 981
>gi|229442475|gb|AAI72871.1| DNA polymerase alpha [synthetic construct]
Length = 581
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 162/286 (56%), Gaps = 40/286 (13%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 318 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 377
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 378 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 437
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 438 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 497
Query: 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
WLE + +SWCK E M ++ ++
Sbjct: 498 WLEVKSPQLLNQPVSWCKVE---------------------------AMALKPDLVNVIK 530
Query: 422 ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+++ PL + ++ +T+ ++ +NE + + A S+ L
Sbjct: 531 DVSPPPLVVMAFSM------KTMQNAKNHQNEIIAMAALVHHSFAL 570
Score = 48.9 bits (115), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>gi|2865228|gb|AAC38857.1| DNA polymerase alpha, partial [Stylonychia lemnae]
Length = 1017
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/283 (44%), Positives = 170/283 (60%), Gaps = 32/283 (11%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I + I+ T S + M L+++PLA Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 736 IFQLIEHTEKDSYFTFMFMLHLSIIPLAKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 795
Query: 462 EKSYVLPDKQYGKNK---------KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKF 512
+K ++LPDK+ K E ++T KG RKKA Y+GGLV+EPK GFYD
Sbjct: 796 KKKFILPDKKPPSAKDFKRGFMEENEEQDTKGGKKGGKRKKAKYAGGLVIEPKAGFYDNI 855
Query: 513 IILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY----------------L 553
++L+DFNSLYPSIIQEYN+CFTT+ P + SD+ + L
Sbjct: 856 VLLLDFNSLYPSIIQEYNLCFTTVNRRPTKKFDGSDLKNQFKVADNEDHQNDDEVEDVEL 915
Query: 554 PEHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGC 611
P+ V+T +LP+ ++ LV+ RR VK MK L Q + RQKA+KLTANSMYGC
Sbjct: 916 PDKNVNTKDAVLPNVLRDLVQKRRAVKEKMKNEK-DPVKLQQLENRQKAIKLTANSMYGC 974
Query: 612 LGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYG 653
LGF +S+F A +AAL+T GRE LL TK + EN L + V+YG
Sbjct: 975 LGFSSSKFHASAIAALITKTGRETLLRTKDIAENKLGFNVVYG 1017
Score = 92.8 bits (229), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 16/196 (8%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL D +++DA E+ +Y+FGK++ E SC + V + R++Y
Sbjct: 320 LPLNQD----GTLSFYWIDAHEE--NNGADLYIFGKIYQPEIKQFVSCSMKVNGMQRELY 373
Query: 260 LLPRSEHLK---TKEPVS--IAQVYSEFDQIATQYK----ILDFKSRKIEKKYAFNLPGV 310
LP+ + + TKE S + V E D I + K I ++ + + +KYAF +P
Sbjct: 374 ALPKMQKISRDLTKEEESQLVRSVQLELDDIRKRKKRFQGITKWRCKAVTRKYAFEMPIQ 433
Query: 311 PDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEK 370
+L+++Y A LPS + G+TF +FG S LE +L+RKIKGP W+ +K
Sbjct: 434 HGEHLFLKIKYDATMTPLPSTVYGNTFECLFGCNQSMLELFILKRKIKGPCWMTIKNPKK 493
Query: 371 FPS-RISWCKYEVQCN 385
+ +WC+ E++ +
Sbjct: 494 VKDFKKTWCRQEIEID 509
>gi|2865236|gb|AAC38861.1| DNA polymerase alpha, partial [Uroleptus gallina]
Length = 973
Score = 218 bits (554), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 124/281 (44%), Positives = 171/281 (60%), Gaps = 29/281 (10%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ + ++ T S + +M L+++PL Q+TN+ GN+ R+L +ERNE LLLH F
Sbjct: 694 LFQLVEHTEKDSYFTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNVCAERNEMLLLHEFK 753
Query: 462 EKSYVLPDKQYGKNKK-----EGEETGEAN----KGKGRKKAAYSGGLVLEPKKGFYDKF 512
+K ++LPDK+ K+ GEE E + KG RKKA YSGGLV++PK FYD
Sbjct: 754 KKKFILPDKKAASAKELKRGVMGEEFEEQDNNGKKGPKRKKAQYSGGLVIDPKARFYDNI 813
Query: 513 IILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY-------------LPEH 556
I+L+DFNSLYPSIIQ N+CFTT+ P + S++ + LP+
Sbjct: 814 ILLLDFNSLYPSIIQVLNLCFTTVSRRPTKNFDGSELKNAFKVQDDDNDDEEESVELPDK 873
Query: 557 QVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGF 614
V+ +LP+ ++ LV+ RR VK MK + L Q +IRQKA+KLTANSMYGCLGF
Sbjct: 874 NVNLKDAVLPNVLRDLVQKRRAVKDKMKNEK-DTVKLQQLEIRQKAIKLTANSMYGCLGF 932
Query: 615 PNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGD 654
+SRF A+ +AAL+T GRE LL TK + EN L + V+YGD
Sbjct: 933 GSSRFHAKAIAALITRTGRETLLRTKDIAENKLGFNVVYGD 973
Score = 104 bits (259), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 106/206 (51%), Gaps = 15/206 (7%)
Query: 194 NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQN 253
NA+D +P D +++DA E+ +Y+FGKVF + N + SC + +
Sbjct: 273 NAQDYPIPYNADGS----LSFYWIDAHEE--NNGSDLYIFGKVFQPQINQYVSCALKING 326
Query: 254 IDRKIYLLP------RSEHLKTKEPVSIAQVYSEFDQIATQ--YKILDFKSRKIEKKYAF 305
+ R+++ LP R K +E + V E + I + I ++ + + +KYAF
Sbjct: 327 MQREVFALPKQTAKARGTLTKEEESKLVRDVQLELEDIRKKRYSNIAKWRCKPVTRKYAF 386
Query: 306 NLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF 365
+P +L+++Y A P LPS+L+G+TF +FG S LE +L+R+IKGP W+
Sbjct: 387 EMPIQHGEHLFLKIKYDATMPPLPSNLTGNTFECIFGANQSMLELFILKRRIKGPCWMTI 446
Query: 366 PEAEKFPS-RISWCKYEVQCNQMEKI 390
A+K + +WC+ E+ + + +
Sbjct: 447 KNAQKVTDFKKTWCRQEIFVDNFKNV 472
>gi|428671654|gb|EKX72572.1| DNA polymerase family B member protein [Babesia equi]
Length = 1356
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 147/354 (41%), Positives = 211/354 (59%), Gaps = 22/354 (6%)
Query: 454 FLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
F + H+F Y E ++ NK KG K+ +Y GGLV EP G YD F+
Sbjct: 639 FAVAHSFTNNGYAHSTVNLHNYTDEDDD----NK-KGDKRGSYEGGLVFEPISGLYDNFV 693
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
+L+DFNSLYPSIIQE+NICFTT + ++ + E L + TG+LP +++LV+
Sbjct: 694 LLLDFNSLYPSIIQEFNICFTTAVIE--EEGEGEPKVEILNDV---TGMLPQILRRLVDL 748
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R VK+++ + +Q +RQ ALKL ANS+YGCLG SRF A+ LAA +T +GR
Sbjct: 749 RFSVKSVLASEK-NEARRIQLGVRQLALKLAANSLYGCLGSVYSRFHAKHLAAYITHQGR 807
Query: 634 EILLNTKSLVEN-LNYEVIYGDTDSLMISCNVND------YDSVFKIGNQIKSECNKLYK 686
+L +TK VEN N +VIYGDTDSLMI+ N+ D +++ + I S NK +K
Sbjct: 808 TVLRSTKEKVENSFNLQVIYGDTDSLMINTNIKDDGQLVNFEAANNLAKTIISTVNKGHK 867
Query: 687 QLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746
+LE+ ID ++ +LLLKKKKYAAL ++ S S+EIKG+D +RRDWS L E G
Sbjct: 868 KLEIGIDAIFNRLLLLKKKKYAALKVNDYSEQNF--SREIKGLDFIRRDWSLLTKEVGNV 925
Query: 747 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
++S IL+ + +D ++ IHE ++ + + +G +P IT+QLTK P
Sbjct: 926 LLSIILNANYGS--GVDGIVEQIHETLRDVNQRIKDGQIPTKSWLITRQLTKNP 977
>gi|19173639|ref|NP_597442.1| DNA-DIRECTED DNA POLYMERASE ALPHA [Encephalitozoon cuniculi GB-M1]
Length = 956
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 239/434 (55%), Gaps = 51/434 (11%)
Query: 413 SSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY 472
S I++I L L+ +++ V G +L+RTL R+ER E+ LLH + + ++ P
Sbjct: 338 SEAILQIFQATEALDLSKEMSEVSGYILNRTLQNLRAERIEYTLLHELYARGFLFPPTV- 396
Query: 473 GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNIC 532
R++ YSGGLVL P+ GFY+ ++L+DFNSLYPSIIQE+N+C
Sbjct: 397 -----------------SRREVKYSGGLVLPPQTGFYEDLVLLLDFNSLYPSIIQEFNVC 439
Query: 533 FTTIPV--RMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSS 588
F+TI + R + + + L E ++ G LP ++ V R+ VK L+KQ
Sbjct: 440 FSTIGMFDRSISGNMSSEQLVRLTEDAKNSERGFLPRILEGFVRRRKAVKDLLKQGGTPE 499
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LN 647
+ DIRQKALKLTANS+YGCLGF SRF +AA +T+KGR++LL K + E
Sbjct: 500 E-TKALDIRQKALKLTANSIYGCLGFVGSRFCNYTMAAYITSKGRDLLLEAKRIAEGECG 558
Query: 648 YEVIYGDTDSLMISCNV----NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK 703
+IYGDTDS+M+ + ++Y ++ +++ N YK++E+++D V+K +LL K
Sbjct: 559 VRIIYGDTDSVMVHTGLAGKKSNYTKALELSRRLQDAINSRYKKIEIEVDKVFKKLLLYK 618
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL----DEQSY-- 757
KK+YA L ++ G++ E KG+D+VR+D+ +++ + + V+ +L D ++Y
Sbjct: 619 KKRYAGLYMTDDGKGRI----EYKGLDLVRKDFCEVSRKICRIVLELLLADCEDPETYRR 674
Query: 758 ----------TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCI 807
D S+ R + +++ ++K+ +DL+ +P I L+KAPE C
Sbjct: 675 FYEGEPKMVLNDGSIKIR-EAVYDELRKVSSDLEG--IPAREFVIHNTLSKAPESYDACA 731
Query: 808 TQIRLSRNRRGRRR 821
+S R + R
Sbjct: 732 ALPHVSLALRLKER 745
>gi|392512664|emb|CAD26619.2| DNA-DIRECTED DNA POLYMERASE ALPHA [Encephalitozoon cuniculi GB-M1]
Length = 951
Score = 216 bits (550), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 239/434 (55%), Gaps = 51/434 (11%)
Query: 413 SSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY 472
S I++I L L+ +++ V G +L+RTL R+ER E+ LLH + + ++ P
Sbjct: 333 SEAILQIFQATEALDLSKEMSEVSGYILNRTLQNLRAERIEYTLLHELYARGFLFPPTV- 391
Query: 473 GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNIC 532
R++ YSGGLVL P+ GFY+ ++L+DFNSLYPSIIQE+N+C
Sbjct: 392 -----------------SRREVKYSGGLVLPPQTGFYEDLVLLLDFNSLYPSIIQEFNVC 434
Query: 533 FTTIPV--RMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSS 588
F+TI + R + + + L E ++ G LP ++ V R+ VK L+KQ
Sbjct: 435 FSTIGMFDRSISGNMSSEQLVRLTEDAKNSERGFLPRILEGFVRRRKAVKDLLKQGGTPE 494
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LN 647
+ DIRQKALKLTANS+YGCLGF SRF +AA +T+KGR++LL K + E
Sbjct: 495 E-TKALDIRQKALKLTANSIYGCLGFVGSRFCNYTMAAYITSKGRDLLLEAKRIAEGECG 553
Query: 648 YEVIYGDTDSLMISCNV----NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK 703
+IYGDTDS+M+ + ++Y ++ +++ N YK++E+++D V+K +LL K
Sbjct: 554 VRIIYGDTDSVMVHTGLAGKKSNYTKALELSRRLQDAINSRYKKIEIEVDKVFKKLLLYK 613
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL----DEQSY-- 757
KK+YA L ++ G++ E KG+D+VR+D+ +++ + + V+ +L D ++Y
Sbjct: 614 KKRYAGLYMTDDGKGRI----EYKGLDLVRKDFCEVSRKICRIVLELLLADCEDPETYRR 669
Query: 758 ----------TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCI 807
D S+ R + +++ ++K+ +DL+ +P I L+KAPE C
Sbjct: 670 FYEGEPKMVLNDGSIKIR-EAVYDELRKVSSDLEG--IPAREFVIHNTLSKAPESYDACA 726
Query: 808 TQIRLSRNRRGRRR 821
+S R + R
Sbjct: 727 ALPHVSLALRLKER 740
>gi|449329080|gb|AGE95354.1| DNA-directed DNA polymerase alpha [Encephalitozoon cuniculi]
Length = 956
Score = 216 bits (549), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 149/437 (34%), Positives = 241/437 (55%), Gaps = 57/437 (13%)
Query: 413 SSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY 472
S I++I L L+ +++ V G +L+RTL R+ER E+ LLH + + ++ P
Sbjct: 338 SEAILQIFQATEALDLSKEMSEVSGYILNRTLQNLRAERIEYTLLHELYARGFLFPPTV- 396
Query: 473 GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNIC 532
R++ YSGGLVL P+ GFY+ ++L+DFNSLYPSIIQE+N+C
Sbjct: 397 -----------------SRREVKYSGGLVLPPQTGFYEDLVLLLDFNSLYPSIIQEFNVC 439
Query: 533 FTTIPV--RMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLVESRRQVKALMKQ---PN 585
F+TI + R + + + L E ++ G LP ++ V R+ VK L+KQ P
Sbjct: 440 FSTIGMFDRSISGNMSSEQLVRLTEDAKNSERGFLPRILEGFVRRRKAVKDLLKQGRTPE 499
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN 645
+ L DIRQKALKLTANS+YGCLGF SRF +AA +T+KGR++LL K + E
Sbjct: 500 ETKAL----DIRQKALKLTANSIYGCLGFVGSRFCNYTMAAYITSKGRDLLLEAKRIAEG 555
Query: 646 -LNYEVIYGDTDSLMISCNV----NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
+IYGDTDS+M+ + ++Y ++ +++ N YK++E+++D V+K +L
Sbjct: 556 ECGVRIIYGDTDSVMVHTGLAGKKSNYTKALELSRRLQDAINSRYKKIEIEVDKVFKKLL 615
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL----DEQS 756
L KKK+YA L ++ G++ E KG+D+VR+D+ +++ + + V+ +L D ++
Sbjct: 616 LYKKKRYAGLYMTDDGKGRI----EYKGLDLVRKDFCEVSRKICRIVLELLLADCEDPET 671
Query: 757 Y------------TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
Y D S+ R + +++ ++K+ +DL+ +P I L+KAPE
Sbjct: 672 YRRFYEGEPKMVLNDGSIKIR-EAVYDELRKVSSDLEG--IPAREFVIHNTLSKAPESYD 728
Query: 805 VCITQIRLSRNRRGRRR 821
C +S R + R
Sbjct: 729 ACAALPHVSLALRLKER 745
>gi|2865232|gb|AAC38859.1| DNA polymerase alpha [Halteria sp.]
Length = 946
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/271 (45%), Positives = 166/271 (61%), Gaps = 37/271 (13%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--YGKNK 476
+MC L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F +K ++LPDK+ G++
Sbjct: 677 LMCHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPDKKQLSGRDM 736
Query: 477 K------EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYN 530
+ E + + K RKKAAY+GGLV+EPK GFYD I+L+DFNSLYPSIIQEYN
Sbjct: 737 RKSMFGDEDDVVEQGGKKGKRKKAAYAGGLVIEPKAGFYDSIILLLDFNSLYPSIIQEYN 796
Query: 531 ICFTTI---PVRMLQDSDI----------------------TTLCEYLPEHQVDT--GIL 563
+CFTT+ P +DI LP+ V+T +L
Sbjct: 797 LCFTTVNRRPTSNFNGTDIQNQFKIKAKKKEDDDQAEDEENEEEQVELPDKGVNTKDAVL 856
Query: 564 PSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQP 623
P+ ++ LV+ R+ VK MK L Q +IRQKA+KLTANSMYGCLGF +SRF A+
Sbjct: 857 PNVLRDLVQKRKAVKDKMKSER-DPVKLQQLEIRQKAIKLTANSMYGCLGFSSSRFHAKA 915
Query: 624 LAALVTAKGREILLNTKSLVEN-LNYEVIYG 653
+AAL+T GR LL+TK + EN L + V+YG
Sbjct: 916 IAALITKTGRNTLLSTKEIAENKLGFNVVYG 946
Score = 100 bits (250), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 104/197 (52%), Gaps = 17/197 (8%)
Query: 200 LPLATDHENKK-VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 258
LPL H NK ++ DA E+ Q +Y+FGKV+ E SC + V + R+I
Sbjct: 242 LPL---HLNKDGTLSFYWFDAHEENNGQ--DLYIFGKVWQPELKQFVSCSLKVNGMQREI 296
Query: 259 YLLP------RSEHLKTKEPVSIAQVYSEFDQIATQ--YKILDFKSRKIEKKYAFNLPGV 310
Y LP RS K +E + +++E + I + I +K + + +KYAF +P
Sbjct: 297 YALPKLKGKARSALSKEEEDKLVMNIFTELEDIRKRKYPAITKWKCKPVTRKYAFEMPIQ 356
Query: 311 PDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF--PEA 368
++L+++Y A P+LP L+G+TF +FG S LE +L+RKIKGP W+ P
Sbjct: 357 HGEHKFLKIKYDATMPSLPYGLTGNTFECLFGANQSLLELFILKRKIKGPCWMTIRNPVK 416
Query: 369 EKFPSRISWCKYEVQCN 385
E +R +WC+ E+ N
Sbjct: 417 ES-EARKTWCRQEIFIN 432
>gi|223460655|gb|AAI38048.1| Pola1 protein [Mus musculus]
Length = 757
Score = 212 bits (540), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 135/191 (70%), Gaps = 7/191 (3%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 258
+LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +
Sbjct: 332 NLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWIESVKTHVSCCVMVKNIERTL 391
Query: 259 YLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPGVP 311
Y LPR +T PV++ VY EFD +I+ +YKI+ FKS+ +EK YAF +P VP
Sbjct: 392 YFLPREMKFDLNTGKETAIPVTMKDVYEEFDSKISAKYKIMKFKSKIVEKNYAFEIPDVP 451
Query: 312 DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
+ SEYLEVRYSA+ P LP +L G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 452 EKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLL 511
Query: 372 PSRISWCKYEV 382
ISWCK+EV
Sbjct: 512 NQPISWCKFEV 522
Score = 49.7 bits (117), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>gi|123425608|ref|XP_001306852.1| polymerase [Trichomonas vaginalis G3]
gi|121888449|gb|EAX93922.1| polymerase, putative [Trichomonas vaginalis G3]
Length = 1378
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 146/430 (33%), Positives = 223/430 (51%), Gaps = 93/430 (21%)
Query: 412 HSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ 471
+++YII + +++++PL +QI+ + G + SR L+G S R+E LL H F + YV+PDK
Sbjct: 612 NTAYIINLTRKIHIVPLTLQISQLSGALWSRVLLGKASPRSEALLAHEFINRGYVIPDKS 671
Query: 472 YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNI 531
K GK R+ A Y GG VL+PK+GF++ ++ ++D+NSLYPSII++YNI
Sbjct: 672 QVKVS-----------GK-REDAQYKGGHVLDPKRGFHENYVTVLDYNSLYPSIIRQYNI 719
Query: 532 CFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ-------- 583
CFTT RM+ + + ++ +LP + +L+ R +VK MK+
Sbjct: 720 CFTT---RMVANPN------------QNSAVLPKIMAELLNKRSEVKKDMKEKGDAQFQV 764
Query: 584 -------------------------------PNLSSDLLMQYDIRQKALKLTANSMYGCL 612
NL ++L +I+Q A+K+ ANSMYG L
Sbjct: 765 TQQIEELENKIKAGEDSVGNKNHLEALKKKLDNLDTEL-RSLNIKQLAVKILANSMYGYL 823
Query: 613 GFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYE------VIYGDTDSLMISCNVND 666
G+ SRF A LA +T KGRE L +VE+ YE ++YGDTDS+M+ C D
Sbjct: 824 GYKGSRFPATKLAEEITKKGREALQAVIDIVEHFQYEDSNQFSIVYGDTDSVMVDCMTRD 883
Query: 667 YDSVFKIGNQIKSECNKLYKQ--------LELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
+ I +K+ ++L +D ++K MLL+ KKKYAAL +L NG
Sbjct: 884 ETRARNVAMGICQAVELHFKKQRKNGDAVMKLGLDHLFKKMLLVSKKKYAAL--DQLPNG 941
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL-DEQSYTDYSLDDRLQNIHEHMKKIR 777
+ + E+KG+D+VRRDW L FVIS + E S DD ++ I M+++
Sbjct: 942 NL--NLELKGLDMVRRDWCFLTRYLSYFVISTFMFGENS------DDSIEKILNEMERVA 993
Query: 778 TDL-DNGFVP 786
L +NG +P
Sbjct: 994 AMLRNNGELP 1003
Score = 60.1 bits (144), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 202 LATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLL 261
+ T+ + + F+M+ + ED G +YLFGK F K + + CV++ N R I+ L
Sbjct: 225 MQTESFHNENFQMYLFNIVEDT----GKLYLFGKAFAK-SKKMVTVCVVISNPRRIIHFL 279
Query: 262 PRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEK--KYAFNLPGVPDLSEYLEV 319
P ++E D ++ + L K+ + KYAF + +S+++
Sbjct: 280 P---------------TFNEIDDCKSEIQSLHQKAIVYPEYLKYAFGDSDISQMSQWITA 324
Query: 320 RYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF 365
+ G ++ VFG +S E ++ KI GP W++F
Sbjct: 325 ELPGNYDISKIPMIGKHYNKVFGWSSSLTECFIMRYKIMGPCWIKF 370
>gi|221052706|ref|XP_002261076.1| DNA polymerase alpha [Plasmodium knowlesi strain H]
gi|194247080|emb|CAQ38264.1| DNA polymerase alpha, putative [Plasmodium knowlesi strain H]
Length = 1880
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 154/438 (35%), Positives = 233/438 (53%), Gaps = 86/438 (19%)
Query: 432 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGR 491
+T + G + SR+L+ SER E+ LLH ++ K ++ P K+ +T E ++GK +
Sbjct: 1028 LTKLSGYLWSRSLLCYTSERIEYFLLHEYNRKKFITPVI------KKRVKTIENDQGKSK 1081
Query: 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ--------- 542
A YSGGLVL+P G+YD F++ +DFNSLYPSII EYN+CF+T+ + Q
Sbjct: 1082 NAAKYSGGLVLDPLCGYYDTFVLYLDFNSLYPSIIIEYNVCFSTLKGKGAQTEVEATKQG 1141
Query: 543 -----------------DSDITTLCEYLPEHQVDT------------------------- 560
D I L + P +D
Sbjct: 1142 EISNGVESPNRASATKGDDSIKELSD--PADSIDVMDAEPGEAVAPNESMEIDDFDKSKP 1199
Query: 561 GILPSEIKKLVESRRQVKALMKQPNLSS--DLLMQYDIRQKALKLTANSMYGCLGFPNSR 618
GILPS +K LVE R +K L+ +LL+ I+ ++KL +NS+YGCLG N+R
Sbjct: 1200 GILPSILKNLVEKRAFIKKLIANEKNKEKKELLL---IQSLSIKLISNSIYGCLGNTNNR 1256
Query: 619 FFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISC-----NVNDYDSVFK 672
F+A+ +AA +T KGR +L +TKS VE N +VIYGDTDS+MI VN+Y F+
Sbjct: 1257 FYAKHMAAFITLKGRNLLQHTKSRVEREFNLKVIYGDTDSIMIDTGIKAQGVNNYKEAFR 1316
Query: 673 IGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM-ICSQEIKGVDV 731
+ + IK+ NK YK+LELD++ ++ +LLLKKKKYA +K+ + M C E+KG++
Sbjct: 1317 LAHVIKNTINKSYKKLELDLECIFSKLLLLKKKKYAC---AKVMDANMEKCEYEMKGINF 1373
Query: 732 VRRDWSQLASEAGKFVISQILDEQS------YTDYSLDDRLQN-----IHEHMKKIRTDL 780
++RD+S+++ G V+ I + TD +D ++N IHE+++ + +
Sbjct: 1374 IKRDFSKISKLIGNEVLKIIFSNKDGQGSGKVTD-GMDVPVENDLSEQIHEYLRGVHQRI 1432
Query: 781 DNGFVPLTLLEITKQLTK 798
L ITK+LTK
Sbjct: 1433 QADEFDLDFFVITKKLTK 1450
Score = 44.7 bits (104), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 15/174 (8%)
Query: 222 DIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSI------ 275
DI K ++ LFGK K + S + ++++ R + L + ++ V I
Sbjct: 410 DICKHRNSIILFGKTITKSK-LYRSVSIYIEDMYRCYFFLLSKNMIYKRDGVEIRFGDKS 468
Query: 276 --AQVYSEF---DQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC-PALP 329
+ S+F Q +Y ++ KI K+ N+ D Y +V YS C P
Sbjct: 469 YNTCIMSDFLEEFQTVRKYHHIESIKCKIVKRRNLNISS-NDEDMYAKVFYSYNCDPISE 527
Query: 330 SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEV 382
++G T+S + +EN ++++ +K P W++ E + P+ +++C ++
Sbjct: 528 KFMNGRTYSSFYCCNEDIIENFIIKKNMKLPCWVKVKELKLNPTNNLTYCYFDC 581
>gi|396081416|gb|AFN83033.1| DNA-directed DNA polymerase alpha [Encephalitozoon romaleae
SJ-2008]
Length = 947
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 150/421 (35%), Positives = 240/421 (57%), Gaps = 51/421 (12%)
Query: 406 IKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSY 465
+K ++ S I++I L L+ +++ + G +L+R L R+ER E+ LLH +E+ Y
Sbjct: 322 LKRLIIESKAILQIFQATEALDLSKEMSEISGYILNRALQNLRAERIEYTLLHELYERGY 381
Query: 466 VLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSI 525
+ P R++ Y+GGLVL P+ GFY+ ++L+DFNSLYPSI
Sbjct: 382 LFPCVA------------------SRREVKYTGGLVLSPQVGFYEDLVLLLDFNSLYPSI 423
Query: 526 IQEYNICFTTIPV---RMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLVESRRQVKAL 580
IQE+N+CF+TI + R+ D D L E L E + G LP ++ V R+ VK L
Sbjct: 424 IQEFNVCFSTIGMFNGRISGDMDGEKL-EMLTEKSRSSGRGFLPKILEGFVGRRKAVKDL 482
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK+ ++ + +IRQ+ALKLTANS+YGCLGF SRF +AA +T KGR++LL K
Sbjct: 483 MKRCKGKEEIKV-LEIRQRALKLTANSIYGCLGFAGSRFCNYTMAAYITNKGRDLLLEAK 541
Query: 641 SLV-ENLNYEVIYGDTDSLMISCNV----NDYDSVFKIGNQIKSECNKLYKQLELDIDGV 695
+ E ++IYGDTDS+M+ + ++Y ++ ++K N YK++E+++D V
Sbjct: 542 RIAEEGCGMKIIYGDTDSVMVHTGLGGEMSNYKKALEMSVRLKDAINSRYKKIEIEVDKV 601
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--- 752
+K +LL KKKKYA L I++ GK S E KG+D+VR+D+ + + + V+ +L
Sbjct: 602 FKKLLLYKKKKYAGLYITE--EGKS--SIEYKGLDLVRKDFCEASRRVCRSVLELLLTDF 657
Query: 753 -DEQSYTDYSLDD--RLQN---------IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
D ++Y + D+ R+ N +++ +KK+ ++L+ +P I L+KAP
Sbjct: 658 EDPRTYARFYEDEPKRVLNDGNSKIRRAVYDELKKLSSNLEG--LPTKDFVIYNTLSKAP 715
Query: 801 E 801
E
Sbjct: 716 E 716
>gi|401826411|ref|XP_003887299.1| DNA polymerase type-B alpha subfamily catalytic domain-containing
protein [Encephalitozoon hellem ATCC 50504]
gi|392998458|gb|AFM98318.1| DNA polymerase type-B alpha subfamily catalytic domain-containing
protein [Encephalitozoon hellem ATCC 50504]
Length = 938
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 147/430 (34%), Positives = 236/430 (54%), Gaps = 53/430 (12%)
Query: 411 LHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK 470
+ S I +I L L+ +++ V G +L+R L R+ER E+ LLH + + Y+ P
Sbjct: 318 VESEAIHRIFQATEALDLSKEMSEVSGYILNRALQNLRAERIEYTLLHELYARGYLFPCI 377
Query: 471 QYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYN 530
GRK+ Y+GGLVL P+ GFY+ ++L+DFNSLYPSIIQE+N
Sbjct: 378 T------------------GRKEVKYTGGLVLSPQAGFYEDLVLLLDFNSLYPSIIQEFN 419
Query: 531 ICFTTIPV---RMLQDSDITTLCEYLPEHQ--VDTGILPSEIKKLVESRRQVKALMKQPN 585
+CF+T+ + R+ D L E L E + G LP ++ V R+ VK LMKQ
Sbjct: 420 VCFSTVGMFNGRISGDMSAEQL-EMLTEKSRIAERGFLPKVLEGFVGRRKAVKDLMKQSK 478
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN 645
+ + +IRQ+ALKLTANS+YGCLGF SRF +AA +T KGR++LL K + E
Sbjct: 479 GKEETRV-LEIRQRALKLTANSIYGCLGFAGSRFCNYTMAAYITNKGRDLLLEAKRIAEG 537
Query: 646 -LNYEVIYGDTDSLMISCNV----NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
+IYGDTDS+M+ + ++Y ++ +++ N Y ++E+++D V+K +L
Sbjct: 538 ECGMRIIYGDTDSVMVHTGLRGEMSNYKKALEMSRKLREAINSRYVKIEIEVDKVFKKLL 597
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL----DEQS 756
L KKKKYA L + + +G+ E KG+D+VR+D+ + + + V+ +L D ++
Sbjct: 598 LYKKKKYAGLYVGE--DGRS--GIEYKGLDLVRKDFCEASRRICRVVLELLLTDPEDPEA 653
Query: 757 YTDYSLDDRLQN-----------IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GG 803
Y + D+ ++ +H+ ++K+R+DL+ +P I L+KAPE G
Sbjct: 654 YEVFYKDEPKKDLNDGNSKIREAVHDELRKLRSDLEG--LPAKDFVIHNTLSKAPENYGP 711
Query: 804 KVCITQIRLS 813
+ + L+
Sbjct: 712 SATLPHVSLA 721
>gi|156094533|ref|XP_001613303.1| DNA polymerase alpha [Plasmodium vivax Sal-1]
gi|148802177|gb|EDL43576.1| DNA polymerase alpha, putative [Plasmodium vivax]
Length = 1707
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 145/438 (33%), Positives = 229/438 (52%), Gaps = 83/438 (18%)
Query: 432 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGR 491
+T + G + +R+L+ SER E+ LLH ++ K ++ P + K + E+ K +
Sbjct: 880 LTKLSGYLWARSLLCYTSERIEYFLLHEYNRKKFITPVVKKRVKKIDSEQV------KNK 933
Query: 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--------------- 536
A YSGGLVLEP G+YD F++ +DFNSLYPSII EYN+CF+T+
Sbjct: 934 AAAKYSGGLVLEPLCGYYDTFVLYLDFNSLYPSIIIEYNVCFSTLKGRGEAANLGEAANL 993
Query: 537 --------------PVRMLQDSDITTLCEYLPEHQVDT------------------GILP 564
+ + +++ + L + + D GILP
Sbjct: 994 GEAANRGEAANLGEAANLGEAANLGAISTELGDAEADAAVALSEAVEVDDFDRTKPGILP 1053
Query: 565 SEIKKLVESRRQVKALMKQPNLSS--DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQ 622
S +K LVE R +K L+ +LL+ I+ ++KL +NS+YGCLG N+RF+A+
Sbjct: 1054 SILKNLVEKRAFIKKLIANEKNKEKKELLL---IQSLSIKLISNSIYGCLGNSNNRFYAK 1110
Query: 623 PLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNV-----NDYDSVFKIGNQ 676
+AA +T KGR +L +TKS VE N +VIYGDTDS+MI + ++Y F++ +
Sbjct: 1111 HMAAFITLKGRNLLQHTKSRVEREFNLKVIYGDTDSIMIDTGIKAQGGSNYKEAFRLAHV 1170
Query: 677 IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMI-CSQEIKGVDVVRRD 735
IK+ NK YK+LELD++ ++ +LLLKKKKYA +K+ + M C E+KG++ ++RD
Sbjct: 1171 IKNTINKSYKRLELDLECIFSKLLLLKKKKYAC---AKVVDANMERCEYEMKGINFIKRD 1227
Query: 736 WSQLASEAGKFVISQIL---DEQSYTDYSL------------DDRLQNIHEHMKKIRTDL 780
+S+++ G V+ I D Q+ +D + IHE+++ + +
Sbjct: 1228 FSRISKLIGNEVLKIIFSSKDGQAVGGGGGAGSAGSADPPVENDLSEQIHEYLRGVHQRI 1287
Query: 781 DNGFVPLTLLEITKQLTK 798
L ITK+LTK
Sbjct: 1288 LADEFDLDFFTITKKLTK 1305
Score = 41.2 bits (95), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 89/215 (41%), Gaps = 22/215 (10%)
Query: 182 DKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKEN 241
D ++K++ I K+ L T+ E V F DI K ++ +FG+ K
Sbjct: 314 DDQEKSRLITTIGMKNKPDELVTNEETGFVNVYIF-----DICKHRNSIIMFGRTLTKFK 368
Query: 242 NSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSI------------AQVYSEFDQIATQY 289
+ S + ++++ R Y L + K+ V I + EF + +
Sbjct: 369 -IYRSVSIYIEDMYRCYYFLLSKTMVYKKDGVEIKYGHKNYNTCIMSDFLEEFRAVRKYH 427
Query: 290 KILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKC-PALPSDLSGDTFSHVFGTKTSFL 348
I K KI K+ NL D Y ++ Y+ C P LSG T+S + +
Sbjct: 428 NIESIKC-KIVKRRNLNLSS-SDEDVYAKIFYTYNCDPISERYLSGRTYSAFYCCNEDVI 485
Query: 349 ENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEV 382
EN ++++ +K P W++ + + +++C ++
Sbjct: 486 ENFVIKKNLKLPCWVKVRGLKLNLTNNLTYCYFDC 520
>gi|296082407|emb|CBI21412.3| unnamed protein product [Vitis vinifera]
Length = 1561
Score = 197 bits (500), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/242 (51%), Positives = 165/242 (68%), Gaps = 11/242 (4%)
Query: 563 LPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNSRFFA 621
L + +KKLVE R+ VK+ +K +S L + Q DI+Q+ALKLTANSMYGCLGF NSRF+A
Sbjct: 996 LHTLLKKLVERRKTVKSRLKT---ASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYA 1052
Query: 622 QPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSE 680
+PLA L+T +GREIL +T LV+ NLN EVIYGDTDS+MI ++D I ++ E
Sbjct: 1053 KPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYTGLDDITKAKAIAGKVIQE 1112
Query: 681 CNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLA 740
NK Y+ LE+D+DG+YK MLLLKKKKYAA+ + + +G E KG+D+VRRDWS L+
Sbjct: 1113 VNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKL-QFKDGTPYEVIERKGLDMVRRDWSLLS 1171
Query: 741 SEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
E G F +SQIL + S +D +++IH + K++ D+ NG V L ITK LTK P
Sbjct: 1172 KELGDFSLSQIL-----SGGSCEDVVESIHNSLMKVQEDMRNGEVALEKYIITKSLTKPP 1226
Query: 801 EG 802
E
Sbjct: 1227 EA 1228
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 71/170 (41%), Positives = 96/170 (56%), Gaps = 34/170 (20%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+V+ I++ + +++M L+VLPL +TN+ GN+ +TL G R++R E+LLLH FH
Sbjct: 772 LVQLIEYGETDAWLSMELMFHLSVLPLTRLLTNISGNLWGKTLQGARAQRVEYLLLHEFH 831
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
K + AYSGGLVLEPK+G YDK+I+L+DFNSL
Sbjct: 832 AK---------------------------KMNQAYSGGLVLEPKRGLYDKYILLLDFNSL 864
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
YPSIIQEYNICFTT V D + LP + TG+LP + LV
Sbjct: 865 YPSIIQEYNICFTT--VERSPDGSVPR----LPSSKT-TGVLPESLALLV 907
Score = 112 bits (279), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 102/204 (50%), Gaps = 28/204 (13%)
Query: 214 MFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEP 272
+ LDA E+ Y G +YLFGKV K +++ SCCV+V+N++R +Y +P E
Sbjct: 343 FYILDAHEEFYGANMGNLYLFGKV--KAGSAYHSCCVVVKNMERCVYAIPNDSVFGNDEI 400
Query: 273 -----------VSIAQVYSEFDQIATQYK-----------ILDFKSRKIEKKYAFNLPGV 310
VS A + ++ +A+ K + F +++ YAF +
Sbjct: 401 MRLEKDIEASRVSPAALRTKLQDVASGLKNEIAKQLLNLNVSTFSMTPVKRSYAFERADI 460
Query: 311 PDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE 369
P Y L++ Y K P LP+DL G+ F + GT S LE L++RKI GP WL +
Sbjct: 461 PVGENYVLKINYPFKDPPLPADLKGEAFCALLGTHCSALELFLIKRKIMGPYWLSISKFS 520
Query: 370 KFPS--RISWCKYEVQCNQMEKIR 391
P+ R+SWCK+EV + + IR
Sbjct: 521 SCPAPERVSWCKFEVTVDCPKDIR 544
Score = 40.0 bits (92), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHK---YEFTADENVYEEVSEKEYTERVLKRQED--DWID 152
+ T + A Q+LK L+ G + ++ ++ +Y+ V E EY + V KR+E+ +I
Sbjct: 18 EATARSDALQRLKALRRGGRRSDGVGFQIKVEDPIYDTVDEDEYDKLVAKRREEFRGFIV 77
Query: 153 DDGGDGYVEDGREIFDDDIEDVPQKKEKHD 182
DD G GY ++G+E D + VP ++ D
Sbjct: 78 DDNGSGYGDEGQE-EDWSLAGVPPSSDESD 106
>gi|302803544|ref|XP_002983525.1| hypothetical protein SELMODRAFT_422725 [Selaginella moellendorffii]
gi|300148768|gb|EFJ15426.1| hypothetical protein SELMODRAFT_422725 [Selaginella moellendorffii]
Length = 935
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 144/400 (36%), Positives = 199/400 (49%), Gaps = 126/400 (31%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+ +M L+VLPL Q+TN+ GN+ S+TL G R++R ++LLLH F+ + Y++PDK G K
Sbjct: 437 LSLMFHLSVLPLTRQLTNINGNLWSKTLQGARAQRVQYLLLHEFYGRKYIVPDKVSGSEK 496
Query: 477 KEGEET-------------GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYP 523
++ ET A + K +K AY+GGLVLEPKKG Y+ F YP
Sbjct: 497 EKDNETKRKTAQQDEDFEPDSAVEAKNKKAPAYTGGLVLEPKKGLYNNF---------YP 547
Query: 524 SIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ 583
SIIQEYNICFTT V D I++ LP G+LP QVK +K+
Sbjct: 548 SIIQEYNICFTT--VERSSDGSISS----LPNADA-PGVLP-----------QVKQWLKK 589
Query: 584 PNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
++D+L Q DI+Q+ALKLTANSMYGCLGFPNSRF+A+ +A L+T
Sbjct: 590 ---TTDVLKYQQMDIQQQALKLTANSMYGCLGFPNSRFYAKFIAELIT------------ 634
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
S+ NK +K LE+D+DGV+K MLL
Sbjct: 635 -------------------------------------SQVNKKHKLLEIDLDGVFKRMLL 657
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
LKKKKYA + + ++GK+ E KF +
Sbjct: 658 LKKKKYACVKVETSADGKL--------------------REVNKFF------------FD 685
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D + IH+ ++K++ D+ NG + L ITK L+K PE
Sbjct: 686 FQDVVDAIHDKLRKLQDDMRNGRIDLEKYVITKSLSKLPE 725
>gi|2865234|gb|AAC38860.1| DNA polymerase alpha, partial [Holosticha sp.]
Length = 966
Score = 192 bits (488), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 118/262 (45%), Positives = 160/262 (61%), Gaps = 27/262 (10%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ + ++ T S +M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 706 LFQLVEHTEKDSYLTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEILLLHEFK 765
Query: 462 EKSYVLPDKQYG--KNKKEG------EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
+K ++LPDK+ K+ + G E KG RKKAAY+GGLV+EPK GFYD I
Sbjct: 766 KKKFILPDKKMPNPKDMRRGMADEFEEPEVAGKKGGKRKKAAYAGGLVIEPKAGFYDNII 825
Query: 514 ILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY------------LPEHQV 558
+L+DFNSLYPSIIQEYN+CFTT+ P + SDI LP+ V
Sbjct: 826 LLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSDIKNKFNVDSADGEDVEESPLPDKSV 885
Query: 559 DT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPN 616
+ +LP+ ++ LV+ R+ VK MK + L Q +IRQKA+KLTANSMYGCLGF +
Sbjct: 886 NLKDAVLPNVLRDLVQKRKAVKDKMKNEK-DAVKLQQLEIRQKAIKLTANSMYGCLGFSS 944
Query: 617 SRFFA-QPLAALVTAKGREILL 637
SRF+A + +AAL+T GR LL
Sbjct: 945 SRFYAFRRIAALITRTGRSTLL 966
Score = 110 bits (275), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 21/230 (9%)
Query: 169 DDIEDVPQKKEKHDK--RKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQ 226
DD + Q+ ++ ++ R + NI N ++ LPL D +++DA E+
Sbjct: 259 DDWRSIKQQNQQANQELRTMDPNIAQ-NTQEYELPLNADGS----LSFYWIDAHEE---N 310
Query: 227 PGT-VYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS-------IAQV 278
GT +++FGKVF KE N + SC + + I+R++Y LP+ ++ K + ++ I V
Sbjct: 311 NGTELFVFGKVFQKEINQYVSCSMKINGIEREVYALPKMQNSKARGTLTKEEETQLIRGV 370
Query: 279 YSEFDQIATQ--YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDT 336
E D I + +I ++ + + +KYAF LP ++L+++Y A P +P++L+G+T
Sbjct: 371 QLELDDIRKKRMPQITKWRCKPVTRKYAFELPIQHGEHQFLKIKYDAIMPPMPNNLTGNT 430
Query: 337 FSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS-RISWCKYEVQCN 385
F +FGT S LE +L+RKIKGP W+ +K + +WC+ E N
Sbjct: 431 FECLFGTNQSMLELFILKRKIKGPCWMTIKNPQKVHEFKKTWCRQEFVIN 480
>gi|303389355|ref|XP_003072910.1| DNA-directed DNA polymerase alpha [Encephalitozoon intestinalis
ATCC 50506]
gi|303302053|gb|ADM11550.1| DNA-directed DNA polymerase alpha [Encephalitozoon intestinalis
ATCC 50506]
Length = 953
Score = 191 bits (486), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 140/425 (32%), Positives = 226/425 (53%), Gaps = 55/425 (12%)
Query: 405 FIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS 464
K L S I++I L L+ ++ + G +L+RTL R+ER E+ LLH + +
Sbjct: 325 LFKTLALESKAILEIFEATEALHLSKEMCEISGYILNRTLQNLRAERIEYTLLHELYNRG 384
Query: 465 YVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPS 524
Y+ P R++ Y+GGLVL P+ GFY+ ++L+DFNSLYPS
Sbjct: 385 YLFPSSV------------------SRREVKYTGGLVLSPQAGFYEDLVLLLDFNSLYPS 426
Query: 525 IIQEYNICFTTIPVR------MLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
IIQE+N+CF+TI + + + L E + G LP ++ V R+ +K
Sbjct: 427 IIQEFNVCFSTIGMFDKSVSGDMSPEKLAVLTE--KSRMSERGFLPKILEGFVGRRKAIK 484
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
LMKQ + DIRQKALKLTANS+YGCLGF SRF +AA +T KGR++LL
Sbjct: 485 DLMKQSRTPEE-AKALDIRQKALKLTANSIYGCLGFTGSRFCNYTMAAYITNKGRDLLLE 543
Query: 639 TKSLV-ENLNYEVIYGDTDSLMISCNV----NDYDSVFKIGNQIKSECNKLYKQLELDID 693
K + E +IYGDTDS+M+ + ++Y ++ +++ N ++++E+++D
Sbjct: 544 AKRIAEEECGMRIIYGDTDSVMVYTGLCGEKSNYKRALEMSRKLRDTINSKHQKIEIEVD 603
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL- 752
V+K +LL KKKKY L + + +GK E KG+D+VR+D+ +++ + K V+ +L
Sbjct: 604 KVFKKLLLYKKKKYGGLYMDE--DGKTYV--EYKGLDLVRKDFCEVSRKICKIVLELLLA 659
Query: 753 ---DEQSYTDYSLDDR-------------LQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
D Y + D ++ +++ +K + ++L++ +P I L
Sbjct: 660 DSEDPMVYERFYKDKGEAKTILNNGNTKIIEAVYDELKNLSSNLES--IPSKEFVIHNTL 717
Query: 797 TKAPE 801
+KAPE
Sbjct: 718 SKAPE 722
>gi|300709156|ref|XP_002996745.1| hypothetical protein NCER_100120 [Nosema ceranae BRL01]
gi|239606068|gb|EEQ83074.1| hypothetical protein NCER_100120 [Nosema ceranae BRL01]
Length = 866
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 193/345 (55%), Gaps = 50/345 (14%)
Query: 424 NVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETG 483
+VL L+ +++ + G +++ L R+E E+ L H ++K Y+LP
Sbjct: 306 DVLILSKELSELSGYTINKVLNNNRAEIIEYTLFHELYDKKYLLP--------------P 351
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQD 543
E N + Y GG V EP KG+YD ++L+DFNSLYPSIIQEYN+CF+
Sbjct: 352 EVNVSVEK----YEGGKVFEPVKGYYDNLVLLLDFNSLYPSIIQEYNVCFSN-------- 399
Query: 544 SDITTLCEYLPE-HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALK 602
P+ + + G+LP + LV+ R++VK LM N D + Y IRQ ALK
Sbjct: 400 ----------PDFNSSEKGVLPKILANLVQRRKEVKKLM---NNDKDNKIYY-IRQMALK 445
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMIS 661
+ ANS+YG LG+P SRF +AA +T KGREIL +TK +EN LNY+VIYGDTDS+MI
Sbjct: 446 ILANSIYGSLGYPKSRFCNYKMAAFITEKGREILRDTKKTIENELNYKVIYGDTDSIMID 505
Query: 662 CN-VNDYDSVFK---IGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSN 717
+++ +++ K I +I + N YK +E++++ ++ + L KK+Y I + +
Sbjct: 506 TGLIHNEENIIKAKEISQEISEKINLKYKNIEIELEKIFTKLFLYAKKRY----IGRYLD 561
Query: 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSL 762
+ +E KG++ ++R++ AS+ V +LD + YSL
Sbjct: 562 SNSVLHEEYKGIEALKRNFCPAASDILYKVNKILLDSDNKNIYSL 606
>gi|429961811|gb|ELA41355.1| DNA polymerase (pol2) [Vittaforma corneae ATCC 50505]
Length = 933
Score = 187 bits (475), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 196/354 (55%), Gaps = 43/354 (12%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
++ I +N L LA ++ + G +L+R L R+ER E+ L+H + Y+ P N
Sbjct: 280 LVDIAESMNALSLAKEMAEISGYLLNRCLGNCRAERIEYTLMHELYAGGYLFPPVTPKMN 339
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K YSGGLVL+P +GFY+ ++L+DFNSLYPSIIQE+N+CF+T
Sbjct: 340 VK------------------YSGGLVLDPVQGFYEDIVLLLDFNSLYPSIIQEFNVCFST 381
Query: 536 IPVR-----------MLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP 584
+ +L + +I + + + DT LP ++ LV RR VK L++
Sbjct: 382 VGSSRFYITEDNAEDVLNNPEIVS---SVADRHADT-FLPRILRSLVRRRRSVKELLRSA 437
Query: 585 NLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
S + M DIRQ+ALKLTANS+YGCLGF SRF +AA +TAKGRE+L TK E
Sbjct: 438 K-SPEERMALDIRQRALKLTANSIYGCLGFTGSRFCNFEMAAFITAKGRELLNETKIAAE 496
Query: 645 NLNYEVIYGDTDSLMISCNVND----YDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
L +VIYGDTDS+MI Y + S+ N Y + ++++ V+K +L
Sbjct: 497 QLGMKVIYGDTDSIMIHTRYPGTKEYYGRAVDSAKALVSKINSRYSSIGIELEKVFKKLL 556
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
L KKKYAAL NG I E KG+D+VRRD+ +++ + V++ +L++
Sbjct: 557 LYTKKKYAALVFDM--NGSCI---ETKGIDIVRRDFCSASTDLSRSVLNVMLED 605
>gi|2865230|gb|AAC38858.1| DNA polymerase alpha, partial [Stylonychia mytilus]
Length = 975
Score = 186 bits (472), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 112/249 (44%), Positives = 149/249 (59%), Gaps = 30/249 (12%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I + I+ T S Y +M L+++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 726 IFQLIEHTEKDSYYTFMLMLHLSIIPLTKQLTNIAGNLWFRSLQNARAERNEMLLLHEFK 785
Query: 462 EKSYVLPDKQ-----------YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYD 510
+K ++LPDK+ G +E + G A KG RKKA Y+GGLV+EPK GFYD
Sbjct: 786 KKKFILPDKKPPNAKDLKRGFMGDEFEENDTKGGAKKGGKRKKAKYAGGLVIEPKAGFYD 845
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEY----------------LP 554
I+L+DFNSLYPSIIQEYN+CFTT+ R ++ D + L LP
Sbjct: 846 NIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNYDGSELKNQFKSADNAEGDEVEDVDLP 905
Query: 555 EHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 612
+ V+ +LP+ ++ LV+ R+ VK MK L Q +IRQKA+KLTANSMYGCL
Sbjct: 906 DKNVNIKDAVLPNVLRDLVQKRKAVKDKMKSEK-DQVKLQQLEIRQKAIKLTANSMYGCL 964
Query: 613 GFPNSRFFA 621
GF +SRF A
Sbjct: 965 GFSSSRFHA 973
Score = 87.4 bits (215), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 100/197 (50%), Gaps = 17/197 (8%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 258
+LPL D +++DA E+ +++FGK+F E N + SC + V + R+I
Sbjct: 310 ALPLNQDGS----LSFYWIDAHEE--NNGADLFIFGKIFQPEINQYVSCSMKVNGMQREI 363
Query: 259 YLLPRSEHLKTKEPVS-------IAQVYSEFDQIATQ--YKILDFKSRKIEKKYAFNLPG 309
Y LP+ + K + ++ + V E + I + I ++ + + +KYAF +P
Sbjct: 364 YALPKMQKGKARGTLTREEENQLVRGVQLELEDIRKKRFQGITKWRCKPVTRKYAFEMPI 423
Query: 310 VPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE 369
+L+++Y A LPS + G+TF V G S LE +L+RK+KGP W+ +
Sbjct: 424 QHGEHLFLKIKYDATFVPLPSTVQGNTFD-VIGLNQSMLELFILKRKLKGPCWMTIKNPK 482
Query: 370 KFPS-RISWCKYEVQCN 385
K + +WC+ E++ +
Sbjct: 483 KVTDFKKTWCRQEIEID 499
>gi|70953938|ref|XP_746040.1| DNA polymerase alpha [Plasmodium chabaudi chabaudi]
gi|56526541|emb|CAH74267.1| DNA polymerase alpha, putative [Plasmodium chabaudi chabaudi]
Length = 1674
Score = 186 bits (472), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 158/450 (35%), Positives = 244/450 (54%), Gaps = 73/450 (16%)
Query: 409 TMLHSSYIIKIMCELNVLPL---AIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSY 465
+ + S Y I +C N+L L + +T + G + +R+L+ SE E+ LLH +H+K +
Sbjct: 812 SQIFSIYEIYNVC--NILQLIEKSRDLTKLSGYIWARSLLSYTSECVEYFLLHEYHKKKF 869
Query: 466 VLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSI 525
+ P K K E + K + A Y GGLVLEP G+YD +++ +DFNSLYPSI
Sbjct: 870 ITPIVVKKKQKIEND------TNKSKNAAKYLGGLVLEPLCGYYDTYVLYLDFNSLYPSI 923
Query: 526 IQEYNICFTTIPVR-MLQDSDITT-----------LCEYLPE--HQVDT----------- 560
I EYNICF+T ++ L SD T+ + Y +Q+D
Sbjct: 924 IIEYNICFSTFNMKNYLASSDSTSKELQEEIEKKNIINYDESDVNQLDNKEEPVGDLSNI 983
Query: 561 --------GILPSEIKKLVESRRQVKALM--KQPNLSSDLLMQYDIRQKALKLTANSMYG 610
GILPS +K+LVE R +K L+ ++ +LL+ ++ ++KL +NS+YG
Sbjct: 984 DYFDKTKPGILPSILKQLVEKRAFIKKLIASEKNKEKKELLL---VQSLSIKLISNSIYG 1040
Query: 611 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMI-----SCNV 664
CLG ++RF+A+ +A+ +T KGR +L +TK VE N VIYGDTDS+MI S ++
Sbjct: 1041 CLGNTHNRFYAKYIASYITQKGRNLLQHTKFKVEKEFNLTVIYGDTDSIMIDTGIKSSDI 1100
Query: 665 NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQ 724
N+Y K+ + IK+ NK YK+LELD++ ++ +LLLKKKKYA + + GK
Sbjct: 1101 NNYKESLKLAHTIKNNINKNYKKLELDLECIFSKLLLLKKKKYACAKVIDPNLGKY--EY 1158
Query: 725 EIKGVDVVRRDWSQLASEAGKFVISQILDEQSY-------TDYSL----DDRLQN----- 768
E+KG++ ++RD+ +++ G ++ I + Y T SL D +QN
Sbjct: 1159 EMKGINFIKRDFCKISKLIGNELLRIIFSNKEYKPAQPNATTSSLNHADDLSIQNDLSEQ 1218
Query: 769 IHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
IHE+++ I + N L ITK+LTK
Sbjct: 1219 IHEYLRSIYHRIQNDEFDLEHYVITKKLTK 1248
Score = 48.9 bits (115), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 25/195 (12%)
Query: 222 DIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS-------------EHLK 268
DI K ++ LFG+ K + S + ++++DR Y L EH K
Sbjct: 318 DICKHKNSIILFGRTLTKLK-RYKSISIYIEDMDRCYYFLLNKNKKYIKDGIEITYEHEK 376
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPAL 328
K + + V SEF +I +Y + KI + NL D Y +V YS +
Sbjct: 377 YKNFIMLDFV-SEFKKIR-EYHNIKMAKYKIVSRKNLNLSSSND-ELYAKVLYSYNYDNI 433
Query: 329 PSDLS-GDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA-EKFPSRISWCKYEVQCNQ 386
+ GDT+S + +EN ++++ +K P W++ + F + I++C ++ +
Sbjct: 434 SEQFAKGDTYSSFYCCNDDIVENFIIKKNMKMPCWIKVKDLKNNFSNNITYCYFDCTVSS 493
Query: 387 ------MEKIRSKQG 395
+EKI K+
Sbjct: 494 KKNIFTLEKISEKKS 508
>gi|82704805|ref|XP_726706.1| DNA polymerase alpha [Plasmodium yoelii yoelii 17XNL]
gi|23482227|gb|EAA18271.1| DNA polymerase alpha-related [Plasmodium yoelii yoelii]
Length = 906
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 162/478 (33%), Positives = 253/478 (52%), Gaps = 79/478 (16%)
Query: 382 VQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQ---ITNVCGN 438
+ CN + S+Q L + +I + + S Y I +C NVL L + +T + G
Sbjct: 10 INCNNIHLFDSEQILENHLN--TYIN-SQIFSIYEIYNVC--NVLQLVEKSRDLTKLSGY 64
Query: 439 VLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSG 498
+ +R+L+ SE E+ LLH +H+K Y+ P K K E + K + A Y G
Sbjct: 65 IWARSLLSYTSECVEYFLLHEYHKKKYITPLVAKKKPKIENDS------NKSKNTAKYLG 118
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML----------------- 541
GLVLEP G+YD +++ +DFNSLYPSII EYNICF+T ++
Sbjct: 119 GLVLEPLCGYYDTYVLYLDFNSLYPSIIIEYNICFSTFNMKNYLALSGSTSEEIQEETGK 178
Query: 542 ------QDSDITTL-----------CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP 584
DSD+ L +Y + + GILPS +K+LVE R +K L+
Sbjct: 179 RNIIDYNDSDVNNLDKDDQVGDISNIDYFDKTK--PGILPSILKQLVEKRAFIKKLIASE 236
Query: 585 NLSS--DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSL 642
+LL+ ++ ++KL +NS+YGCLG ++RF+A+ +A+ +T KGR +L +TK
Sbjct: 237 KNKEKKELLL---VQSLSIKLISNSIYGCLGNTHNRFYAKYIASYITQKGRNLLQHTKFK 293
Query: 643 VE-NLNYEVIYGDTDSLMI-----SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
VE N +V+YGDTDS+MI S +VN+Y K+ + IK+ NK YK+LELD++ ++
Sbjct: 294 VEKEFNLKVVYGDTDSIMIDTGIKSSDVNNYKESLKLAHTIKNNINKNYKKLELDLECIF 353
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
+LLLKKKKYA + + GK E+KG++ ++RD+ +++ G ++ I +
Sbjct: 354 SKLLLLKKKKYACAKVIDPNLGKY--EYEMKGINFIKRDFCKISKLIGNEMLRIIFSNKE 411
Query: 757 Y-------TDYSL----DDRLQN-----IHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
Y ++ SL D +QN IHE+++ + + N L ITK+LTK
Sbjct: 412 YKPSQPNSSNTSLSHTDDLSIQNDLSEQIHEYLRSVYQRIQNDEFDLEHYVITKKLTK 469
>gi|2865224|gb|AAC38855.1| DNA polymerase alpha, partial [Pleurotricha lanceolata]
Length = 990
Score = 178 bits (451), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 143/240 (59%), Gaps = 36/240 (15%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ + I+ T + +++M L ++PL Q+TN+ GN+ R+L R+ERNE LLLH F
Sbjct: 753 LFKLIEHTERDAYLTLQLMNHLQIIPLTKQLTNIAGNMWFRSLRNARAERNEMLLLHEFK 812
Query: 462 EKSYVLPDKQYGKNKK--------EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
+K ++LPDK+ K E EE + KG RKKAAY+GGLV+EPK GFYD I
Sbjct: 813 KKKFLLPDKKQPTAKDLKRNPFADEFEEMEKDQKGGKRKKAAYAGGLVIEPKAGFYDNII 872
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL-----------------CEYLPEH 556
+L+DFNSLYPSIIQEYN+CFTT+ R ++ D + L LP+
Sbjct: 873 LLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSELKSQFKKVNEQGEEEEVEEADLPDK 932
Query: 557 QVDT--GILPSEIKKLVESRRQVKALMK----QPNLSSDLLMQYDIRQKALKLTANSMYG 610
V+T +LP+ ++ LV+ RR VK MK Q LS Q +IRQKA+KLTANSMYG
Sbjct: 933 NVNTKDAVLPNVLRDLVQKRRAVKDKMKTEKDQVKLS-----QLEIRQKAIKLTANSMYG 987
Score = 102 bits (253), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 23/208 (11%)
Query: 196 KDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNID 255
KD LPL D +++DA E+ +Y+FGK++ E + SC + V +
Sbjct: 333 KDYDLPLNQD----GTLSFYWIDAHEE--NNGADLYIFGKIYQHEERQYVSCSIKVNGMQ 386
Query: 256 RKIYLLPRSE-----HLKTKEPVSIAQ-VYSEFDQIATQ--YKILDFKSRKIEKKYAFNL 307
R+++ LP+ + L T+E ++ + E D I + I ++ +++ +KYAF +
Sbjct: 387 RELFALPKMKGKARGALTTEEQKEQSRAMIMELDDIRKKRFPNITKWRCKQVNRKYAFEM 446
Query: 308 PGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
P ++LE++Y A P+LPS + G+TF +FG S LE +L+RKIKGP W+
Sbjct: 447 PIQHGEHQFLEIKYDATMPSLPSTVQGNTFECIFGCNQSILELFILKRKIKGPCWMTI-- 504
Query: 368 AEKFPSRI-----SWCKYEVQCNQMEKI 390
K P ++ +WC+ EV N + I
Sbjct: 505 --KNPKKVIDYGKTWCRQEVIVNNPKDI 530
>gi|68072149|ref|XP_677988.1| DNA polymerase alpha [Plasmodium berghei strain ANKA]
gi|56498307|emb|CAH97899.1| DNA polymerase alpha, putative [Plasmodium berghei]
Length = 827
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 144/408 (35%), Positives = 220/408 (53%), Gaps = 70/408 (17%)
Query: 449 SERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGF 508
SE E+ LLH +H+K Y+ P K K E + K + A Y GGLVLEP G+
Sbjct: 3 SECIEYFLLHEYHKKKYITPLVSKKKQKIEND------TNKSKNTAKYLGGLVLEPLCGY 56
Query: 509 YDKFIILMDFNSLYPSIIQEYNICFTTIPVR-----------------------MLQDSD 545
YD +++ +DFNSLYPSII EYNICF+T ++ DSD
Sbjct: 57 YDTYVLYLDFNSLYPSIIIEYNICFSTFNMKHYLASSASTSEEIQEDIEKKNIVYYNDSD 116
Query: 546 ITTLCEYLPEHQVDT-----------GILPSEIKKLVESRRQVKALM--KQPNLSSDLLM 592
I L + + E D GILPS +K+LVE R +K L+ ++ +LL+
Sbjct: 117 INQL-DNIDEQVGDLSNIDYFDKTKPGILPSILKQLVEKRAFIKKLIASEKNKEKKELLI 175
Query: 593 QYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVI 651
++ ++KL +NS+YGCLG ++RF+A+ +A+ +T KGR +L +TK VE N +V+
Sbjct: 176 ---VQSLSIKLISNSIYGCLGNTHNRFYAKYIASYITQKGRNLLQHTKFKVEKEFNLKVV 232
Query: 652 YGDTDSLMI-----SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
YGDTDS+MI S + N+Y K+ + IK+ NK YK+LELD++ ++ +LLLKKKK
Sbjct: 233 YGDTDSIMIDTGIKSSDANNYKESLKLAHTIKNNINKNYKKLELDLECIFSKLLLLKKKK 292
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY--------- 757
YA + + GK E+KG++ ++RD+ +++ G ++ I + Y
Sbjct: 293 YACAKVIDPNLGKY--EYEMKGINFIKRDFCKISKLIGNELLRIIFSNKEYKPSQPNSSN 350
Query: 758 --TDYSLDDRLQN-----IHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
++S D +QN IHE+++ + + N L ITK+LTK
Sbjct: 351 ISLNHSDDISIQNDLSEQIHEYLRSVYQRIQNDEFDLEHYVITKKLTK 398
>gi|378755233|gb|EHY65260.1| hypothetical protein NERG_01706 [Nematocida sp. 1 ERTm2]
Length = 996
Score = 177 bits (449), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 178/332 (53%), Gaps = 36/332 (10%)
Query: 424 NVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETG 483
++LPLA +++ + G +L+ G +S+R E+LLLH + Y++P K
Sbjct: 401 SLLPLAEKLSYITGALLNSIFHGFKSDRVEYLLLHRMRDNQYLIPKKLLA---------- 450
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFY-DKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ 542
GK K Y GG V K G Y D +I L DFNSLYPSIIQEYN+CF+T +
Sbjct: 451 ----GKVDSKDTYEGGYVFLEKPGMYSDTYISLFDFNSLYPSIIQEYNVCFSTSHDLSMD 506
Query: 543 DSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALK 602
+++ +LP ++ LV R ++K MK D+L+ +I Q+A+K
Sbjct: 507 SKNVSR-----------PSLLPGALRDLVAQRTEIKKQMKAGK--GDVLL-LEIEQRAVK 552
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC 662
L AN +YGCLGF RF+ + +AA +T GR IL +TK+ +E+ Y VIYGDTDS+M+
Sbjct: 553 LVANCIYGCLGFKGFRFYNKAMAAFITECGRSILKDTKTTLESNGYRVIYGDTDSVMVDT 612
Query: 663 NVNDYDS--VFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
+ + K+ ++I + Y+ ++L + + ++++ KKKY + S +N
Sbjct: 613 GIGTSSAPPSNKLLDEISDSISCKYRTIKLGFEKTFLKLVMMAKKKYFGVVHSNGAN--- 669
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
E KG++ RRDW ++A E VI +L
Sbjct: 670 --EVEEKGLETGRRDWCEMAQEGISAVIRVLL 699
>gi|253743796|gb|EET00097.1| DNA polymerase alpha subunit A [Giardia intestinalis ATCC 50581]
Length = 1728
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 125/383 (32%), Positives = 190/383 (49%), Gaps = 59/383 (15%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
+I + LN +PL +I+ + GR++R E L+L+ F Y++PD +Y
Sbjct: 889 LIGVANALNFIPLTCRISQLTALPWQLVCSIGRAKRAESLILYNFFAMPYIIPDIEYKIY 948
Query: 476 KKEGEETGEANKGK----------GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSI 525
++ E +K K GR Y GG V++P GF+DK +I++DFNSLYP+I
Sbjct: 949 EQNTGGRDEIHKAKDDANTDVVEEGRHGVGYEGGYVMDPVTGFHDKIVIVLDFNSLYPNI 1008
Query: 526 IQEYNICFTTI----------PVRM-------------LQDSDITTLCE--YLPEHQVDT 560
I+EY++CFTT+ P + LQDS + E ++ + T
Sbjct: 1009 IREYSLCFTTLDPKNYIPGINPANINDSSPSLSHLQSDLQDSWTQAIEEEIHISKQINHT 1068
Query: 561 GILPSEIKKLVESRRQVKALMK---------QPNLSSDLLMQYDIRQKALKLTANSMYGC 611
ILP I +L+ R+ +K +K L+ L M DI Q A+KL AN+MYG
Sbjct: 1069 VILPRIIARLIIQRQTIKTKIKDLEAMQVEDDKTLNQRLKM-LDISQLAIKLCANAMYGS 1127
Query: 612 LGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYD--- 668
LG+ RF+ +AA + A+GR L ++ + ++VIYGDTDS+MI N+ +Y
Sbjct: 1128 LGYQYGRFYCPHVAARIPARGRLELTRASNIAKQQGFQVIYGDTDSIMIKTNL-EYSKPE 1186
Query: 669 ------SVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMIC 722
V I I S + K L+L +D ++ LLL+KKKYAA +
Sbjct: 1187 KHKIMAQVKTIATTISSRVGEDRKYLQLGLDYIFIKYLLLQKKKYAATRLFP----DFSV 1242
Query: 723 SQEIKGVDVVRRDWSQLASEAGK 745
+ E KG+D+VRRDW ++ K
Sbjct: 1243 ALEYKGLDLVRRDWCLISRNISK 1265
>gi|429964510|gb|ELA46508.1| DNA polymerase (pol2) [Vavraia culicis 'floridensis']
Length = 813
Score = 172 bits (436), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 199/346 (57%), Gaps = 49/346 (14%)
Query: 420 MCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEG 479
+ +L VL L ++ + G+ L RT+ R+ER E+LL+H+ ++K +++ ++ G N
Sbjct: 261 LIKLGVLDLCKELCEITGHQLDRTI-TFRAERTEYLLMHSMYQKKWLICRERKGNNH--- 316
Query: 480 EETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR 539
Y+GGLVLEP+ G ++ IIL+DFNSLYPSII E N+CF+TI +
Sbjct: 317 ----------------YTGGLVLEPRTGLFEN-IILIDFNSLYPSIIIEENLCFSTINRK 359
Query: 540 M-LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQ 598
++ C E + +LP+ + L+ R+++K + + S+ YD RQ
Sbjct: 360 ARAGKENVDGACAGNTE---EMALLPAILSTLITRRKKLKQELVKKYSST-----YDARQ 411
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSL 658
KALK+TAN++YGCLG RF +AA +T +GRE+L+ KS +E + V+YGDTDSL
Sbjct: 412 KALKITANAIYGCLG-STGRFSNLEMAAFITGRGRELLMKAKSEIEKIGLTVLYGDTDSL 470
Query: 659 MI--SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS 716
MI C+V + S + +I + N YK + ++++ +++ ++L KKKYA +++ K
Sbjct: 471 MIKSDCSVEEIPS---LAQKICASINNHYKFISIEMEDIFERIILYTKKKYAGITVKK-- 525
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSL 762
++I +KG++ RRD+ L+++ F+ I + +D++L
Sbjct: 526 --EII----LKGIE--RRDYCMLSNQ---FIYDVIWILLTSSDHNL 560
>gi|387597306|gb|EIJ94926.1| hypothetical protein NEPG_00451 [Nematocida parisii ERTm1]
Length = 870
Score = 171 bits (433), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 176/332 (53%), Gaps = 36/332 (10%)
Query: 424 NVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETG 483
N+L LA ++ + G +L+ G +S+R E+LLLH + Y++P K G
Sbjct: 275 NLLALAEKLAYITGALLNPIFHGYKSDRVEYLLLHRMRDNQYLIPRKSLG---------- 324
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFY-DKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ 542
GK K Y GG V K G Y +++I L DFNSLYPSIIQEYN+CF+T +
Sbjct: 325 ----GKISDKDTYEGGYVFLDKPGVYSERYIALFDFNSLYPSIIQEYNVCFSTSHCLKMD 380
Query: 543 DSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALK 602
++ +T +LP ++ LV R ++K MK ++ LL +I Q+A+K
Sbjct: 381 NTKEST-----------PSLLPGALRDLVTQRSEIKRQMKSGAGNTQLL---EIEQRAVK 426
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC 662
L AN +YGCLGF RF+ + +AA +T GR IL +TK+ +E+ +VIYGDTDS+M+
Sbjct: 427 LVANCIYGCLGFKGFRFYNKTMAAFITECGRTILKDTKATLESKGLQVIYGDTDSVMVDT 486
Query: 663 N--VNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
+ D + + I + Y ++L + + ++++ KKKY I L+ +
Sbjct: 487 GIKITDPSPSLETLSGISELISCKYNNIKLGFEKTFSKLVMMAKKKY--FGIYCLNGADV 544
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
I E KG++ RRDW +A E V+ +L
Sbjct: 545 I---EEKGLETGRRDWCLVARETISAVMRILL 573
>gi|387593650|gb|EIJ88674.1| hypothetical protein NEQG_01364 [Nematocida parisii ERTm3]
Length = 641
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/332 (34%), Positives = 176/332 (53%), Gaps = 36/332 (10%)
Query: 424 NVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETG 483
N+L LA ++ + G +L+ G +S+R E+LLLH + Y++P K G
Sbjct: 59 NLLALAEKLAYITGALLNPIFHGYKSDRVEYLLLHRMRDNQYLIPRKSLG---------- 108
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFY-DKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ 542
GK K Y GG V K G Y +++I L DFNSLYPSIIQEYN+CF+T ++
Sbjct: 109 ----GKISDKDTYEGGYVFLDKPGVYSERYIALFDFNSLYPSIIQEYNVCFSTSHCLKME 164
Query: 543 DSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALK 602
++ +T +LP ++ LV R ++K MK + LL +I Q+A+K
Sbjct: 165 NTKEST-----------PSLLPGALRDLVTQRSEIKRQMKSGAGNIQLL---EIEQRAVK 210
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC 662
L AN +YGCLGF RF+ + +AA +T GR IL +TK+ +E+ +VIYGDTDS+M+
Sbjct: 211 LVANCIYGCLGFKGFRFYNKTMAAFITECGRTILKDTKATLESKGLQVIYGDTDSVMVDT 270
Query: 663 N--VNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
+ D + + I + Y ++L + + ++++ KKKY I L+ +
Sbjct: 271 GIKITDPSPSLETLSGISELISCKYNNIKLGFEKTFSKLVMMAKKKY--FGIYCLNGADV 328
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
I E KG++ RRDW +A E V+ +L
Sbjct: 329 I---EEKGLETGRRDWCLVARETISAVMRILL 357
>gi|7682378|gb|AAF67244.1| DNA polymerase [Leishmania enriettii]
Length = 309
Score = 164 bits (416), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 134/208 (64%), Gaps = 26/208 (12%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL+G RSER E+LLLH FH+ ++ PD+ ++ K
Sbjct: 113 VISHLDVIRLTKRLTTIAGNLWSRTLLGARSERIEYLLLHTFHDLKFITPDRHV-QDFKR 171
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 172 GRDDEEED---GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 228
Query: 539 RMLQDSDITTLCEYLPEHQVDT--------------GILPSEIKKLVESRRQVKALMK-Q 583
+ D+ PE+ + +LP IK LV+SRR+VK LMK +
Sbjct: 229 GNQSEIDVPP-----PENLICASCAAASLSAPCLHKCVLPKVIKSLVDSRREVKRLMKAE 283
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGC 611
+++S L++ IRQKALKLTANSMYGC
Sbjct: 284 KDVNSLALLE--IRQKALKLTANSMYGC 309
>gi|357482859|ref|XP_003611716.1| DNA polymerase [Medicago truncatula]
gi|355513051|gb|AES94674.1| DNA polymerase [Medicago truncatula]
Length = 611
Score = 163 bits (413), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 121/275 (44%), Positives = 159/275 (57%), Gaps = 48/275 (17%)
Query: 567 IKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLA 625
+KKLV+ RR+ K MK +S L Q DI Q+ALKLTANSMYGCLGF NSRF+A+PLA
Sbjct: 11 LKKLVKLRREKKTWMKT---ASGLKRQQLDIEQQALKLTANSMYGCLGFSNSRFYAKPLA 67
Query: 626 ALVT-------------------------------------AKGREILLNTKSLVE-NLN 647
L+T +GREIL +T LV+ NLN
Sbjct: 68 ELITLQVRRICWLVSTKPVIIHYHTLSIVSDTFILTYMFDVIQGREILQSTVDLVQNNLN 127
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKY 707
EVIYGDTDS+MI ++D I ++ E NK Y+ LE+D+DG+YK MLLLKKKKY
Sbjct: 128 LEVIYGDTDSIMIYSGLDDIAKATSISKKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKY 187
Query: 708 AALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
AA+ + +G E KG+D+VRRDWS LA + G F ++QIL + S +D ++
Sbjct: 188 AAVK-VQFKDGTPYEVIERKGLDIVRRDWSLLAKDLGDFCLTQIL-----SGGSCEDVVE 241
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+IH + K++ ++ NG V L ITK LTK PE
Sbjct: 242 SIHNSLMKVQEEMRNGQVALEKYVITKTLTKPPEA 276
>gi|300681495|emb|CBH32591.1| unnamed protein product [Triticum aestivum]
Length = 1016
Score = 162 bits (409), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 85/190 (44%), Positives = 119/190 (62%), Gaps = 32/190 (16%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLH+FH K +++PDK +NK
Sbjct: 834 LELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHSFHAKKFIIPDKFAARNK 893
Query: 477 K------------EG-------------EETGEANKGKGRKKAAYSGGLVLEPKKGFYDK 511
+ EG +E ++GK RK +Y+GGLVLEPKKG YDK
Sbjct: 894 ELNSAKRKLNADTEGGNAADGAADPSIDDEVHNGDQGKARKGPSYAGGLVLEPKKGLYDK 953
Query: 512 FIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+I+L+DFNSLYPSIIQE+NICFTT V D ++ LP + TG+LP ++ LV
Sbjct: 954 YILLLDFNSLYPSIIQEFNICFTT--VERSSDGNLPN----LPNSKA-TGVLPELLQSLV 1006
Query: 572 ESRRQVKALM 581
E RR VK+ +
Sbjct: 1007 ERRRMVKSWL 1016
Score = 112 bits (279), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 105/206 (50%), Gaps = 29/206 (14%)
Query: 211 VFRMFFLDAFEDIYK-QPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS----- 264
+ LDA+E+ + GTVYLFGKV + + SCCV+V+N+ R IY +P S
Sbjct: 383 ALPFYVLDAYEEPFGINSGTVYLFGKVVIGKR--FHSCCVVVKNMQRCIYAIPSSSVFPR 440
Query: 265 ------EHLKTKEPVSIAQVYSEFDQIATQYKI-----------LDFKSRKIEKKYAFNL 307
E T S + + ++++ KI +F +++ YAF
Sbjct: 441 DTISRIEKNSTSSDAS-PSLRATLHELSSGLKIEVAEKLSDLNVSNFVMTPVKRNYAFER 499
Query: 308 PGVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFP 366
VP +Y L++ Y K PA+P+DL G+ F + GT S LE L++RKIKGPSWL
Sbjct: 500 TDVPIGEQYVLKINYPYKDPAVPADLRGEHFHALLGTNNSALELFLIKRKIKGPSWLSIS 559
Query: 367 EAEKFPS--RISWCKYEVQCNQMEKI 390
+ PS R+SWCK+EV + + I
Sbjct: 560 KFVACPSTQRVSWCKFEVTVDSPKDI 585
Score = 44.3 bits (103), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 104 AAFQKLKDLKGQGVKHK--YEFTADENVYEEVSEKEYTERVLKRQEDD--WIDDDGGDGY 159
AA ++L+ ++G G + + ++ +Y+ V+E++Y V +R++D +I DD G GY
Sbjct: 50 AALERLRAIRGGGARSAAAVQVRMEDPIYDTVAEEDYAALVARRRKDAGAFIIDDDGLGY 109
Query: 160 VEDGRE 165
V+DGRE
Sbjct: 110 VDDGRE 115
>gi|2581876|gb|AAC47765.1| DNA polymerase alpha [Leishmania amazonensis]
Length = 307
Score = 160 bits (404), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 128/198 (64%), Gaps = 14/198 (7%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ K
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFKR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 174 GRDDDEED---GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 230
Query: 539 RMLQDSDI----TTLCEYLPEHQVDT-----GILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C + T +LP IK LV+SRR+VK LMK +++
Sbjct: 231 ENRSEIDVPPPENLICASCAAEGLSTPCLHKCVLPKVIKSLVDSRREVKRLMKTEKDANN 290
Query: 590 LLMQYDIRQKALKLTANS 607
L + +IRQKALKLTANS
Sbjct: 291 LAL-LEIRQKALKLTANS 307
>gi|2581902|gb|AAC47778.1| DNA polymerase alpha [Leishmania mexicana]
Length = 308
Score = 160 bits (404), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 128/198 (64%), Gaps = 13/198 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ K
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFKR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E GK +KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 174 GRDDDEEEDGK--RKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 231
Query: 539 RMLQDSDI----TTLC-----EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C E L + +LP IK LV+SRR+VK LMK +++
Sbjct: 232 ENRSEIDVPPPENLICASCAAEGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKTEKDANN 291
Query: 590 LLMQYDIRQKALKLTANS 607
L + +IRQKALKLTANS
Sbjct: 292 LAL-LEIRQKALKLTANS 308
>gi|2581884|gb|AAC47769.1| DNA polymerase alpha [Leishmania deanei]
gi|2581894|gb|AAC47774.1| DNA polymerase alpha [Leishmania hertigi]
Length = 308
Score = 159 bits (403), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/200 (44%), Positives = 128/200 (64%), Gaps = 13/200 (6%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+ ++ L+V+ L ++T + GN+ SRTL GGRSER E+LLLH FH+ ++ PD+ K
Sbjct: 113 MSVISHLDVIRLTRRLTTIAGNLWSRTLFGGRSERIEYLLLHTFHDLKFITPDRYVQDFK 172
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ ++ GE + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 173 RSRDDEGEED---GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTV 229
Query: 537 PVRMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLS 587
+ D+ +C L + ILP IK LV+SRR+VK LMK +
Sbjct: 230 DRKDQSVIDVPPPENLICASCAGAGLSAPCLHKCILPKVIKSLVDSRREVKRLMKTEKDA 289
Query: 588 SDLLMQYDIRQKALKLTANS 607
+ L + +IRQ+ALKLTANS
Sbjct: 290 NSLAL-LEIRQRALKLTANS 308
>gi|426196824|gb|EKV46752.1| hypothetical protein AGABI2DRAFT_186127 [Agaricus bisporus var.
bisporus H97]
Length = 1071
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 207/409 (50%), Gaps = 58/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+S + L +E+ YV+P
Sbjct: 489 KLMCFVNYTEMA-RVTGVPFNYL---LSRGQSIKVLSQLFRKANEEGYVIP--------- 535
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-I 536
A KG+G AY G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT I
Sbjct: 536 -------ALKGEGTDGEAYEGATVIEPKKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLI 588
Query: 537 PVRMLQDSDITTLCEYLPEHQVDT--------GILPSEIKKLVESRRQVKA---LMKQPN 585
M++ D+ +Y+ D G+LP+ ++ L+ +R++ KA + K P
Sbjct: 589 DGNMIEKLDLVKDVDYIQTPNNDFFVTSMKRKGLLPTILEDLISARKRAKADLKMEKDPF 648
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE- 644
+ L D RQ ALK++ANS+YG G + P+++ VTA GR+++ TK VE
Sbjct: 649 KKAVL----DGRQLALKISANSVYGFTGATVGKLPCLPISSSVTAYGRQMIEKTKQEVEA 704
Query: 645 --------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGV 695
+ VIYGDTDS+M+ ND V +G++ + K K ++L+ + V
Sbjct: 705 EFCIANGHQYDARVIYGDTDSVMVKFGQNDLAQVMALGSEAAEFVSAKFIKPIKLEFEKV 764
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
Y LL+ KK+YA L +K + S KG++ VRRD +L S + + ++L
Sbjct: 765 YYPYLLISKKRYAGLYWTKAEKYDKMDS---KGIETVRRDNCRLVSTVIETSLHKLL--- 818
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ ++K++ DL V ++ L ITK L+K GK
Sbjct: 819 ------IDRDVKAAEIYVKQMIADLLQNKVDMSQLVITKALSKTDYAGK 861
>gi|2581886|gb|AAC47770.1| DNA polymerase alpha [Leishmania donovani]
Length = 308
Score = 159 bits (402), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 127/198 (64%), Gaps = 13/198 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y +N K
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQNFKR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E GK +KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 174 GRDDDEEEDGK--RKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 231
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 232 ENGSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKIEKDANN 291
Query: 590 LLMQYDIRQKALKLTANS 607
L + +IRQKALKLTANS
Sbjct: 292 LAL-LEIRQKALKLTANS 308
>gi|409081586|gb|EKM81945.1| hypothetical protein AGABI1DRAFT_55049 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1089
Score = 159 bits (402), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 207/409 (50%), Gaps = 58/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+S + L +E+ YV+P
Sbjct: 507 KLMCFVNYTEMA-RVTGVPFNYL---LSRGQSIKVLSQLFRKANEEGYVIP--------- 553
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-I 536
A KG+G AY G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT I
Sbjct: 554 -------ALKGEGTDGEAYEGATVIEPKKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLI 606
Query: 537 PVRMLQDSDITTLCEYLPEHQVDT--------GILPSEIKKLVESRRQVKA---LMKQPN 585
M++ D+ +Y+ D G+LP+ ++ L+ +R++ KA + K P
Sbjct: 607 EGSMIEKLDLVKDVDYIQTPNNDFFVTSMKRKGLLPTILEDLISARKRAKADLKMEKDPF 666
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE- 644
+ L D RQ ALK++ANS+YG G + P+++ VTA GR+++ TK VE
Sbjct: 667 KKAVL----DGRQLALKISANSVYGFTGATVGKLPCLPISSSVTAYGRQMIEKTKQEVEA 722
Query: 645 --------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGV 695
+ VIYGDTDS+M+ ND V +G++ + K K ++L+ + V
Sbjct: 723 EFCIANGHQYDARVIYGDTDSVMVKFGQNDLAQVMALGSEAAEFVSAKFIKPIKLEFEKV 782
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
Y LL+ KK+YA L +K + S KG++ VRRD +L S + + ++L
Sbjct: 783 YYPYLLISKKRYAGLYWTKAEKYDKMDS---KGIETVRRDNCRLVSTVIETSLHKLL--- 836
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ ++K++ DL V ++ L ITK L+K GK
Sbjct: 837 ------IDRDVKAAEIYVKQMIADLLQNKVDMSQLVITKALSKTDYAGK 879
>gi|2581898|gb|AAC47776.1| DNA polymerase alpha [Leishmania infantum]
Length = 308
Score = 159 bits (401), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 127/198 (64%), Gaps = 13/198 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y +N K
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQNFKR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E GK +KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 174 GRDDEEEEDGK--RKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 231
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 232 ESGSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKIEKDANN 291
Query: 590 LLMQYDIRQKALKLTANS 607
L + +IRQKALKLTANS
Sbjct: 292 LAL-LEIRQKALKLTANS 308
>gi|2581880|gb|AAC47767.1| DNA polymerase alpha [Leishmania braziliensis]
gi|2581904|gb|AAC47779.1| DNA polymerase alpha [Leishmania panamensis]
Length = 307
Score = 158 bits (400), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 128/198 (64%), Gaps = 14/198 (7%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ K
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFKR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 174 GRDDDEED---GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 230
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 231 ENRSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKTEKDANN 290
Query: 590 LLMQYDIRQKALKLTANS 607
L + +IRQKALKLTANS
Sbjct: 291 LAL-LEIRQKALKLTANS 307
>gi|2581900|gb|AAC47777.1| DNA polymerase alpha [Leishmania major]
Length = 307
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 128/198 (64%), Gaps = 14/198 (7%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ K
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFKR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 174 GHDDEEED---GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 230
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 231 ENRSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKTEKDANN 290
Query: 590 LLMQYDIRQKALKLTANS 607
L + +IRQKALKLTANS
Sbjct: 291 LAL-LEIRQKALKLTANS 307
>gi|2581882|gb|AAC47768.1| DNA polymerase alpha [Leishmania chagasi]
Length = 308
Score = 158 bits (399), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 126/198 (63%), Gaps = 13/198 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y +N K
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQNFKR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E GK +KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 174 GRDDEEEEDGK--RKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 231
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 232 ESGSKIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKIEKDANN 291
Query: 590 LLMQYDIRQKALKLTANS 607
L + +IRQKALKLTANS
Sbjct: 292 LAL-LEIRQKALKLTANS 308
>gi|2581874|gb|AAC47764.1| DNA polymerase alpha [Leishmania aethiopica]
gi|2581878|gb|AAC47766.1| DNA polymerase alpha [Leishmania arabica]
gi|2581908|gb|AAC47781.1| DNA polymerase alpha [Leishmania tropica]
Length = 307
Score = 157 bits (396), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 128/198 (64%), Gaps = 14/198 (7%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ K
Sbjct: 115 VVSNLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFKR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS++QE+NICFTT+
Sbjct: 174 GHDDEEED---GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLMQEFNICFTTVDR 230
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 231 ENRSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKTEKDANN 290
Query: 590 LLMQYDIRQKALKLTANS 607
L + +IRQKALKLTANS
Sbjct: 291 LAL-LEIRQKALKLTANS 307
>gi|156550362|ref|XP_001607497.1| PREDICTED: transmembrane protein 147-like [Nasonia vitripennis]
Length = 229
Score = 156 bits (395), Expect = 5e-35, Method: Composition-based stats.
Identities = 72/98 (73%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 1 MLILATFVPTTDNFS-GGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML+LATF P DN G D FG+ +K SIDL D VG YLVL+ IPGKGHAK+LTAG+GW
Sbjct: 50 MLVLATFFPAADNIGYKGFDFFGEFLKSSIDLADLVGIYLVLNGIPGKGHAKVLTAGIGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AGAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNICL+
Sbjct: 110 AGAEVVLTRFLLLWVGARGAEFDWKYIQKSLESNICLV 147
>gi|2581872|gb|AAC47763.1| DNA polymerase alpha [Leishmania adleri]
gi|2581896|gb|AAC47775.1| DNA polymerase alpha [Leishmania hoogstraali]
gi|2581906|gb|AAC47780.1| DNA polymerase alpha [Leishmania tarentolae]
Length = 308
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 125/198 (63%), Gaps = 13/198 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ +
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFRR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E GK R K Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 174 GRDDDEEEDGKRRAK--YQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 231
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK ++
Sbjct: 232 ENRNEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKTEKDANS 291
Query: 590 LLMQYDIRQKALKLTANS 607
L + +IRQKALKLTANS
Sbjct: 292 LAL-LEIRQKALKLTANS 308
>gi|384483568|gb|EIE75748.1| hypothetical protein RO3G_00452 [Rhizopus delemar RA 99-880]
Length = 233
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 136/211 (64%), Gaps = 5/211 (2%)
Query: 400 IGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGG-RSERNEFLLLH 458
+ I+ + + ++ I +L +L L+ Q+T + GN+ S ++ GG R++RN++LLLH
Sbjct: 24 LDIMNLVYHGSFDAYLVLSIALKLQILSLSKQLTKLAGNLWSTSINGGARTDRNDYLLLH 83
Query: 459 AFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
AF++ ++ PDK+ + +++ E + K + ++++SGGLVLEPK G Y K+++L+DF
Sbjct: 84 AFYKNQFICPDKR-DRRVNSKQDSTEEDIIK-QNESSFSGGLVLEPKPGLYKKYVLLLDF 141
Query: 519 NSLYPSIIQEYNICFTTIPVRML--QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
NSLYPSIIQEYN+C TT+ ++ + ++ + + + + GILP ++K V+ R+Q
Sbjct: 142 NSLYPSIIQEYNVCHTTMNLQKIGANETSMDMIAQEMLSESQRIGILPKLVRKFVQRRQQ 201
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANS 607
VK MK P +S QYDI QKALK TAN+
Sbjct: 202 VKKAMKDPTISDSQRNQYDIEQKALKGTANN 232
>gi|297793989|ref|XP_002864879.1| DNA-directed DNA polymerase delta catalytic subunit [Arabidopsis
lyrata subsp. lyrata]
gi|297310714|gb|EFH41138.1| DNA-directed DNA polymerase delta catalytic subunit [Arabidopsis
lyrata subsp. lyrata]
Length = 1092
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 127/395 (32%), Positives = 198/395 (50%), Gaps = 61/395 (15%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ VLP+ K+ G E G
Sbjct: 526 VEMARVTGVPISFLLARGQSIKVLSQLLRKAKQKNLVLPNA-----KQSGSEQG------ 574
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 549
Y G VLE + GFY+K I +DF SLYPSI+ YN+C+ T ++ D+ L
Sbjct: 575 -----TYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCT----LVTPEDVRKL 625
Query: 550 CEYLPEHQVDT-------------GILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQY 594
PEH T GILP +++L+ +R++ KA +K+ + D L
Sbjct: 626 -NLPPEHVTRTPSGETFVKQSLQKGILPEILEELLTARKRAKADLKE---AKDPLEKAVL 681
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--------- 645
D RQ ALK++ANS+YG G N + +++ VT+ GR+++ TK LVE+
Sbjct: 682 DGRQLALKISANSVYGFTGATNGQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYE 741
Query: 646 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKK 704
N EVIYGDTDS+M+ V+D ++ +G + + + K ++L+ + VY LL+ K
Sbjct: 742 YNAEVIYGDTDSVMVQFGVSDVEAAMNLGREAAEHISGTFIKPIKLEFEKVYFPYLLINK 801
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
K+YA L +N + + KG++ VRRD L +++IL +D
Sbjct: 802 KRYAGL---LWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTESLNKIL---------IDR 849
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ E++KK +DL + L+LL ITK LTK
Sbjct: 850 DVPGAAENVKKTISDLLMNRIDLSLLVITKGLTKT 884
>gi|2581890|gb|AAC47772.1| DNA polymerase alpha [Leishmania gymnodactyli]
Length = 308
Score = 156 bits (395), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 125/198 (63%), Gaps = 13/198 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ +
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YLQDFRR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E GK R K Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 174 GRDDDEEEDGKRRAK--YQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 231
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK ++
Sbjct: 232 ENRNEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKTEKDANS 291
Query: 590 LLMQYDIRQKALKLTANS 607
L + +IRQKALKLTANS
Sbjct: 292 LAL-LEIRQKALKLTANS 308
>gi|269861177|ref|XP_002650302.1| DNA polymerase alpha catalytic subunit [Enterocytozoon bieneusi
H348]
gi|220066250|gb|EED43740.1| DNA polymerase alpha catalytic subunit [Enterocytozoon bieneusi
H348]
Length = 498
Score = 156 bits (394), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/244 (40%), Positives = 144/244 (59%), Gaps = 20/244 (8%)
Query: 526 IQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
IQEYNICF+TI + + ++ E ++ LP I LV RR++K M
Sbjct: 1 IQEYNICFSTIDLLKIDKNN---------ELDMNLLFLPKIINNLVRRRREIKKQMINCK 51
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN 645
+S+ L QY+IRQKALKLTANSMYGCLGFPN+RF+ +AA +T +GR IL +TK + E
Sbjct: 52 -NSEQLNQYNIRQKALKLTANSMYGCLGFPNNRFYNYDMAAFITEQGRNILKDTKIISEK 110
Query: 646 LNYEVIYGDTDSLMISCNVNDYDSVFKIG----NQIKSECNKLYKQLELDIDGVYKYMLL 701
LN VIYGDTDS+MI +K ++ N YK + ++++ + +LL
Sbjct: 111 LNLNVIYGDTDSIMIHTKYPGTREYYKKAKNSIEELAKAINNKYKNIVIELECAFAKLLL 170
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
KKKYA L + N I EIKG+++VRRD++++++ + V+ IL+E DY
Sbjct: 171 YAKKKYAGLVFN--MNTSYI---EIKGLEIVRRDYAKISTNLQEKVLKIILNEND-IDYK 224
Query: 762 LDDR 765
+D++
Sbjct: 225 IDNK 228
>gi|298675626|ref|YP_003727376.1| DNA polymerase Pol2 [Methanohalobium evestigatum Z-7303]
gi|298288614|gb|ADI74580.1| DNA polymerase Pol2 [Methanohalobium evestigatum Z-7303]
Length = 913
Score = 155 bits (393), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 194/387 (50%), Gaps = 54/387 (13%)
Query: 405 FIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS 464
FI + S ++++ +L +L I ++ V G+VL + GG+S E LL F ++
Sbjct: 363 FIDYARRDSELALELVTKLQLLDKYIALSQVSGSVLQDVVDGGQSSMVENLLFREFGKQG 422
Query: 465 YVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPS 524
V+P K N+ + E GE KG G VLEPKKG D +IL D+ SLYP+
Sbjct: 423 RVIPPKP--DNRPDDNEQGEEIKG----------GEVLEPKKGLLDNVVIL-DYKSLYPT 469
Query: 525 IIQEYNICFTTIPVRMLQDSDITTLC---EYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
I+ +N+C+TT+ V + + E++ V GI+PS ++ L+ R +VK M
Sbjct: 470 IMMAHNLCYTTVVVNDHPNGETINPPSGGEFV-NPDVLKGIVPSILETLLNQRSEVKKKM 528
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K + D YD Q ALK+ NS YG G+ +R ++ LA VT+ GRE + NT+
Sbjct: 529 KSIS-DGDTYRMYDATQLALKILLNSFYGYSGYARARLYSLTLANAVTSYGRENIQNTRD 587
Query: 642 LVEN---------------------------LNYEVIYGDTDSLMISCNVNDYDSVFK-- 672
L+ N +N V+YGDTDS+ I C+ +Y++
Sbjct: 588 LINNNIRKVVLKDNQAYLPDEISPEDESEDVINLSVVYGDTDSVFIHCS-PEYNNDISLE 646
Query: 673 ----IGNQIKSECNK-LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIK 727
+G +I + ++ L +EL+ + + K L L KK+Y AL + + N + S ++K
Sbjct: 647 DAECVGTRIAEKVSQSLPDPMELEFESIAKRGLFLAKKRY-ALWVFEQENDEWEDSIKVK 705
Query: 728 GVDVVRRDWSQLASEAGKFVISQILDE 754
G++ VRRDW +L S+ V+ +L E
Sbjct: 706 GMETVRRDWCELTSKTLNRVLELVLKE 732
>gi|17225461|gb|AAL37413.1|AF326983_1 DNA polymerase alpha [Leishmania sp. MHOM/MQ/92/MAR1]
Length = 305
Score = 155 bits (392), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/199 (44%), Positives = 130/199 (65%), Gaps = 16/199 (8%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL+G RSER E+LLLH FH+ ++ PD+ + K+
Sbjct: 113 VISHLDVIRLTKRLTTIAGNLWSRTLLGARSERIEYLLLHTFHDLKFITPDRHVQEFKR- 171
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 172 GRDDDEED---GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 228
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMK-QPNLSS 588
+ D+ +C L + +LP IK LV+SRR+VK LMK + +++S
Sbjct: 229 ENRSEVDVPPPENLICASCTAAGLSSPCLHKCVLPKVIKSLVDSRREVKRLMKAEKDVNS 288
Query: 589 DLLMQYDIRQKALKLTANS 607
L++ IRQKALKLTANS
Sbjct: 289 LALLE--IRQKALKLTANS 305
>gi|150401083|ref|YP_001324849.1| DNA polymerase Pol2 [Methanococcus aeolicus Nankai-3]
gi|150013786|gb|ABR56237.1| DNA polymerase Pol2 [Methanococcus aeolicus Nankai-3]
Length = 811
Score = 153 bits (387), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 181/352 (51%), Gaps = 52/352 (14%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLL-HAFHEKSYVLPDKQYGKNKKEGEETGE 484
LPL I +N+ G L S E+LLL H+F+ K+Y+ P++ YG
Sbjct: 345 LPLEIMFSNIVGQCLFDISRMSSSNMVEYLLLKHSFN-KNYLAPNRPYG----------- 392
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 544
N+ + R K Y GG V EP KG +D I+ MDF +LYPSII YNI TI D+
Sbjct: 393 -NEYQNRLKEGYEGGYVKEPIKGMHDN-IVSMDFRALYPSIIISYNISPDTINCPCCGDT 450
Query: 545 DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL-------------L 591
+ L + + ++ GI+P +K L+E R+ +K ++K N + + L
Sbjct: 451 NDKILGYWFCKKKI--GIIPEILKDLIERRKNIKDVLKNKNTTENNKDDNNKNNNENYKL 508
Query: 592 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVI 651
+ Y+ Q+++K+ ANS YG + +P +R++++ A ++T GR + T EN + VI
Sbjct: 509 LNYE--QQSIKILANSFYGYMAYPRARWYSKECAEVITHLGRAYIRKTIEEAENNGFNVI 566
Query: 652 YGDTDSLMISCNVND---------YDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLL 702
Y DTD L + N + K N+I E L +++EL+ +G YK + +
Sbjct: 567 YADTDGLYAILDENKNKNTNKENILNKTIKFLNEINRE---LPEKMELEFEGYYKRGIFI 623
Query: 703 KKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
KK+YA + N K+I +KG++ VRRDWS +A + K V++ +L E
Sbjct: 624 TKKRYALID----ENNKII----VKGLEFVRRDWSNIAKKTQKKVLNTLLKE 667
>gi|8777309|dbj|BAA96899.1| DNA polymerase III catalytic subunit [Arabidopsis thaliana]
Length = 1081
Score = 153 bits (386), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 197/395 (49%), Gaps = 61/395 (15%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ VLP+ K+ G E G
Sbjct: 527 VEMARVTGVPISFLLARGQSIKVLSQLLRKGKQKNLVLPNA-----KQSGSEQG------ 575
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 549
Y G VLE + GFY+K I +DF SLYPSI+ YN+C+ T ++ D+ L
Sbjct: 576 -----TYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCT----LVTPEDVRKL 626
Query: 550 CEYLPEHQVDT-------------GILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQY 594
PEH T GILP +++L+ +R++ KA +K+ + D L
Sbjct: 627 -NLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRAKADLKE---AKDPLEKAVL 682
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--------- 645
D RQ ALK++ANS+YG G + +++ VT+ GR+++ TK LVE+
Sbjct: 683 DGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQ 742
Query: 646 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKK 704
N EVIYGDTDS+M+ V+D ++ +G + + + K ++L+ + VY LL+ K
Sbjct: 743 YNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLINK 802
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
K+YA L +N + + KG++ VRRD L +++IL +D
Sbjct: 803 KRYAGL---LWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTESLNKIL---------IDR 850
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ E++KK +DL + L+LL ITK LTK
Sbjct: 851 DVPGAAENVKKTISDLLMNRIDLSLLVITKGLTKT 885
>gi|186532719|ref|NP_201201.2| DNA polymerase delta subunit 1 [Arabidopsis thaliana]
gi|322510022|sp|Q9LVN7.2|DPOD1_ARATH RecName: Full=DNA polymerase delta catalytic subunit; AltName:
Full=Protein EMBRYO DEFECTIVE 2780
gi|76262800|gb|ABA41487.1| DNA-directed DNA polymerase delta catalytic subunit [Arabidopsis
thaliana]
gi|332010438|gb|AED97821.1| DNA polymerase delta subunit 1 [Arabidopsis thaliana]
Length = 1095
Score = 152 bits (384), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 197/395 (49%), Gaps = 61/395 (15%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ VLP+ K+ G E G
Sbjct: 529 VEMARVTGVPISFLLARGQSIKVLSQLLRKGKQKNLVLPNA-----KQSGSEQG------ 577
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 549
Y G VLE + GFY+K I +DF SLYPSI+ YN+C+ T ++ D+ L
Sbjct: 578 -----TYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCT----LVTPEDVRKL 628
Query: 550 CEYLPEHQVDT-------------GILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQY 594
PEH T GILP +++L+ +R++ KA +K+ + D L
Sbjct: 629 -NLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRAKADLKE---AKDPLEKAVL 684
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--------- 645
D RQ ALK++ANS+YG G + +++ VT+ GR+++ TK LVE+
Sbjct: 685 DGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQ 744
Query: 646 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKK 704
N EVIYGDTDS+M+ V+D ++ +G + + + K ++L+ + VY LL+ K
Sbjct: 745 YNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLINK 804
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
K+YA L +N + + KG++ VRRD L +++IL +D
Sbjct: 805 KRYAGL---LWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTESLNKIL---------IDR 852
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ E++KK +DL + L+LL ITK LTK
Sbjct: 853 DVPGAAENVKKTISDLLMNRIDLSLLVITKGLTKT 887
>gi|2581888|gb|AAC47771.1| DNA polymerase alpha [Endotrypanum monterogeii]
Length = 313
Score = 152 bits (384), Expect = 9e-34, Method: Composition-based stats.
Identities = 90/208 (43%), Positives = 125/208 (60%), Gaps = 24/208 (11%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK--QYGK 474
+ ++ L+VL L ++T + GN+ SRTL GGRSER E+LLLH FH+ ++ PD+ Q K
Sbjct: 113 MAVISHLDVLRLTKRLTTIAGNLWSRTLFGGRSERIEYLLLHTFHDLKFITPDRYVQDFK 172
Query: 475 NKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT 534
+ G + + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFT
Sbjct: 173 RSRGGGGDDDDGEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFT 232
Query: 535 TIPVRMLQDSDITTLCEYLPEHQVDTG---------------ILPSEIKKLVESRRQVKA 579
T+ D ++ E P + +LP IK LV+SRR+VK
Sbjct: 233 TV------DRKDQSVIEVPPPENLICASCAGAGLSAPCLHKCVLPKVIKSLVDSRREVKR 286
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANS 607
LMK + L + +IRQKALKLTANS
Sbjct: 287 LMKTEKDPNSLAL-LEIRQKALKLTANS 313
>gi|2581892|gb|AAC47773.1| DNA polymerase alpha [Leishmania herreri]
Length = 313
Score = 152 bits (384), Expect = 9e-34, Method: Composition-based stats.
Identities = 90/208 (43%), Positives = 125/208 (60%), Gaps = 24/208 (11%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK--QYGK 474
+ ++ L+VL L ++T + GN+ SRTL GGRSER E+LLLH FH+ ++ PD+ Q K
Sbjct: 113 MAVISHLDVLRLTKRLTTIAGNLWSRTLFGGRSERIEYLLLHTFHDLKFITPDRYVQDFK 172
Query: 475 NKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT 534
+ G + + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFT
Sbjct: 173 RSRGGGGDEDDGEEDGKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFT 232
Query: 535 TIPVRMLQDSDITTLCEYLPEHQVDTG---------------ILPSEIKKLVESRRQVKA 579
T+ D ++ E P + +LP IK LV+SRR+VK
Sbjct: 233 TV------DRKDQSVIEVPPPENLICASCAGAGLSAPCLHKCVLPKVIKSLVDSRREVKR 286
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANS 607
LMK + L + +IRQKALKLTANS
Sbjct: 287 LMKTEKDPNSLAL-LEIRQKALKLTANS 313
>gi|334188613|ref|NP_001190611.1| DNA polymerase delta subunit 1 [Arabidopsis thaliana]
gi|332010439|gb|AED97822.1| DNA polymerase delta subunit 1 [Arabidopsis thaliana]
Length = 1112
Score = 152 bits (383), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 197/395 (49%), Gaps = 61/395 (15%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ VLP+ K+ G E G
Sbjct: 546 VEMARVTGVPISFLLARGQSIKVLSQLLRKGKQKNLVLPNA-----KQSGSEQG------ 594
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 549
Y G VLE + GFY+K I +DF SLYPSI+ YN+C+ T ++ D+ L
Sbjct: 595 -----TYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCT----LVTPEDVRKL 645
Query: 550 CEYLPEHQVDT-------------GILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQY 594
PEH T GILP +++L+ +R++ KA +K+ + D L
Sbjct: 646 -NLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRAKADLKE---AKDPLEKAVL 701
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--------- 645
D RQ ALK++ANS+YG G + +++ VT+ GR+++ TK LVE+
Sbjct: 702 DGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQ 761
Query: 646 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKK 704
N EVIYGDTDS+M+ V+D ++ +G + + + K ++L+ + VY LL+ K
Sbjct: 762 YNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLINK 821
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
K+YA L +N + + KG++ VRRD L +++IL +D
Sbjct: 822 KRYAGL---LWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTESLNKIL---------IDR 869
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ E++KK +DL + L+LL ITK LTK
Sbjct: 870 DVPGAAENVKKTISDLLMNRIDLSLLVITKGLTKT 904
>gi|392589878|gb|EIW79208.1| hypothetical protein CONPUDRAFT_138364 [Coniophora puteana
RWD-64-598 SS2]
Length = 1096
Score = 151 bits (382), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 128/408 (31%), Positives = 207/408 (50%), Gaps = 57/408 (13%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A ++T V N L L G+S + L +E+ Y +P
Sbjct: 515 KLMCFVNYIEMA-RVTGVPFNYL---LSRGQSIKVLSQLYRRANEEGYAIP--------- 561
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
A KG+G + Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 562 -------AFKGEGSDEQ-YEGATVIEPKKGYYDAPIATLDFSSLYPSIMMAHNLCYTTLL 613
Query: 538 -------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ +++D D T ++ ++ G+LPS ++ L+ +R++ KA +K+ +
Sbjct: 614 DKKTIDRLELVKDVDYIQTPNNDFFATAKMRKGLLPSILEDLIGARKRAKADLKK---ET 670
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D D RQ ALK++ANS+YG G + P+++ T+ GR+++ TK VE
Sbjct: 671 DTFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLPISSSTTSYGRQMIEKTKQEVEAE 730
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVY 696
N EVIYGDTDS+M+ +D V +G Q K K ++L+ + VY
Sbjct: 731 FCIANGHAHNAEVIYGDTDSVMVKFGPSDLREVMAMGAQAADFVTAKFIKPIKLEFEKVY 790
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +K + S KG++ VRRD +L S + + ++L
Sbjct: 791 FPYLLISKKRYAGLYWTKPEKYDKMDS---KGIETVRRDNCRLVSTVIETCLHKML---- 843
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ ++ KK+ +DL V ++ L ITK L KA K
Sbjct: 844 -----IDRDVKGAEDYTKKMISDLLLNKVDMSQLVITKALAKADYAAK 886
>gi|85014201|ref|XP_955596.1| DNA polymerase delta catalytic subunit [Encephalitozoon cuniculi
GB-M1]
gi|19171290|emb|CAD27015.1| DNA POLYMERASE DELTA CATALYTIC (LARGE) CHAIN [Encephalitozoon
cuniculi GB-M1]
gi|449329935|gb|AGE96202.1| DNA polymerase delta catalytic large chain [Encephalitozoon
cuniculi]
Length = 974
Score = 151 bits (381), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 202/398 (50%), Gaps = 47/398 (11%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+++ LNVL +++ V G + G + + L+ A ++ +++PD
Sbjct: 402 LRLFNTLNVLINYTELSRVTGTPIEYFFTRGMAIKIFTLVYRAASKEDFMIPDI------ 455
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ E+NK + GG V+EP+KGFY+K + +MDF+SLYPSI+ +N+C+TT+
Sbjct: 456 ----DPFESNK-------TFEGGFVIEPRKGFYNKPVSVMDFSSLYPSIMISHNLCYTTL 504
Query: 537 PV----RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLM 592
R+L + T Y + G+LP + L+ SR+++K +++ S L
Sbjct: 505 LTKEQYRILGGTKTPT-GNYFCSAERKKGLLPRILTDLLTSRKRIKEELEREK-DSALRA 562
Query: 593 QYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYE--- 649
+ RQ A KL ANS+YG G + ++ VT GRE+++ TK L+E N+
Sbjct: 563 CLNGRQLAFKLCANSLYGFTGASRGKLPCFEISQSVTGFGREMIILTKKLIEE-NFSRKN 621
Query: 650 -------VIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLL 701
VIYGDTDS+M+ + D + VFK+ +I +K K + L+ + VY LL
Sbjct: 622 GYTHDSVVIYGDTDSVMVDFDEQDIEKVFKMSKEISEFITSKFVKPVSLEFEKVYYPYLL 681
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
+ KK+YA L S N I + +G++ VRRD +L E + V+ IL +++
Sbjct: 682 INKKRYAGLLYSNPENPSKI---DTRGIETVRRDNCRLVKEVVETVLEMILYQKN----- 733
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
++ + +K DL G L+LL I+K LTKA
Sbjct: 734 ----VEKAKQFVKDAVRDLYLGRTDLSLLVISKSLTKA 767
>gi|332022556|gb|EGI62858.1| Transmembrane protein 147 [Acromyrmex echinatior]
Length = 229
Score = 151 bits (381), Expect = 2e-33, Method: Composition-based stats.
Identities = 72/98 (73%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 1 MLILATFVPTTDNF-SGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT DN G D+FG+ +K SIDL D VG LVL+SIPGKGHAK+LTAG+GW
Sbjct: 50 MLALATFFPTADNVGEEGFDIFGEFLKSSIDLADLVGILLVLNSIPGKGHAKVLTAGIGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AGAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNI L+
Sbjct: 110 AGAEVLLTRFLLLWVGARGAEFDWKYIQKSLESNINLV 147
>gi|255077772|ref|XP_002502470.1| predicted protein [Micromonas sp. RCC299]
gi|226517735|gb|ACO63728.1| predicted protein [Micromonas sp. RCC299]
Length = 1147
Score = 150 bits (380), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 128/410 (31%), Positives = 211/410 (51%), Gaps = 58/410 (14%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I++ V G LS L G+S + +L ++ ++P KK G E +A+ G
Sbjct: 570 IEMARVTGVPLSFLLARGQSIKVLSQILRKAKQRGLLVPHIA----KKGGGE--QADGG- 622
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRMLQDSD 545
AY G VL+ K G+Y+ + +DF SLYPSI+ +N+C++T +P V+ + D
Sbjct: 623 ----VAYEGATVLDAKAGYYEMPVATLDFASLYPSIMMAHNLCYSTLVPRDRVQFMASED 678
Query: 546 IT-TLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKA 600
+T T C ++ H+ + GILP + +L+ +R++ KA +K Q L +L D RQ A
Sbjct: 679 VTRTPCGDTFVKSHK-EKGILPEILTELLSARKRAKADLKKAQDPLEKAVL---DGRQLA 734
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVI 651
LK++ANS+YG G + +++ TA GRE++ +TK++VE N +VI
Sbjct: 735 LKVSANSVYGFTGATVGQLPCLEISSSTTAFGREMIDHTKAMVEKRYTTANGYKANADVI 794
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAAL 710
YGDTDS+MI NV + + K+G + + + K ++L+ + VY LL+ KK+YA L
Sbjct: 795 YGDTDSVMIKFNVPELEDAMKLGEEAAEYVSATFIKPIKLEFEKVYFPYLLISKKRYAGL 854
Query: 711 SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ------SYTDYSLDD 764
+K + + KG++ VRRD + + + + +IL + SY ++ D
Sbjct: 855 LWTKTEKYDYM---DTKGIETVRRDNCLMVRQVIETCLEKILIHRNPKGAISYVKNTISD 911
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSR 814
L N LD ++LL ITK L++APE V + L++
Sbjct: 912 LLMN----------KLD-----MSLLVITKSLSQAPENYAVNAPHVELAK 946
>gi|307203148|gb|EFN82327.1| Transmembrane protein 147 [Harpegnathos saltator]
Length = 229
Score = 150 bits (379), Expect = 3e-33, Method: Composition-based stats.
Identities = 71/98 (72%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 1 MLILATFVPTTDNF-SGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT DN G D+FG+ +K SIDL D +G LVL+SIPGKGHAK+LTAG+GW
Sbjct: 50 MLALATFFPTADNVGEEGFDIFGEFLKSSIDLADLIGFLLVLNSIPGKGHAKVLTAGIGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AGAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNI L+
Sbjct: 110 AGAEVLLTRFLLLWVGARGAEFDWKYIQKSLESNINLV 147
>gi|449017897|dbj|BAM81299.1| DNA polymerase delta, catalytic subunit [Cyanidioschyzon merolae
strain 10D]
Length = 1084
Score = 150 bits (379), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 129/408 (31%), Positives = 204/408 (50%), Gaps = 50/408 (12%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ +++M +L L +++ V G L L G + LL HE ++PD
Sbjct: 487 LKDAYLPLRLMDKLMSLTNYMELARVTGVPLDWLLSRGHMVKVVSLLHRKAHEADLLVPD 546
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
EA G Y G V+EPKKGFY I MDF SLYPSI+ Y
Sbjct: 547 L----------PRTEAGGRSGDGGPQYEGATVIEPKKGFYRTPIATMDFASLYPSIMMAY 596
Query: 530 NICFTTIPVRMLQDSDI----------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA 579
N+C++T ++ +SD+ T L + V GIL +++ + SR+ K
Sbjct: 597 NLCYST----LVHESDVPKLKPDDYIRTPLGHCFVKPSVRKGILSEMLEEFLASRKAAKR 652
Query: 580 LMKQPNLSSDLLMQ-YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
M+ N + L + + RQ ALK++AN++YG G + ++A VT+ GR ++
Sbjct: 653 DMQ--NATDPFLREVLNGRQLALKISANAVYGFTGASVGKLPCMEISASVTSYGRNMIEL 710
Query: 639 TKSLVENL--NYEVIYGDTDSLMISCNVNDYDS---VFKIGNQIKSECNKLY-KQLELDI 692
T+S VE L EVIYGDTDS+M+ ND+ + V ++G + + ++ + L+
Sbjct: 711 TRSTVERLYPGAEVIYGDTDSVMV--KFNDHATLEQVMELGREAAKQLTNIFPPPVRLEF 768
Query: 693 DGVYKYMLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+ VY LL+ KK+YA L ++L + KM C KG++ VRRD +L + V+ ++
Sbjct: 769 EKVYYPYLLISKKRYAGLYWTRLERHDKMDC----KGIESVRRDNCRLVANVVDTVLQKL 824
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
L EQ + E +KKI +DL + L+LL ++K LT+A
Sbjct: 825 LIEQD---------VDGAIEFVKKIVSDLLQNRIDLSLLVVSKTLTRA 863
>gi|328777651|ref|XP_003249379.1| PREDICTED: transmembrane protein 147-like isoform 1 [Apis
mellifera]
Length = 229
Score = 150 bits (379), Expect = 4e-33, Method: Composition-based stats.
Identities = 72/98 (73%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 1 MLILATFVPTTDNFSG-GVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT DN G G D+ G+ +K SIDL D VG LVL++IPGKGHAK+LTAGVGW
Sbjct: 50 MLALATFFPTADNVGGEGFDLIGEFLKSSIDLADLVGILLVLNNIPGKGHAKVLTAGVGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AGAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNI L+
Sbjct: 110 AGAEVLLTRFLLLWVGARGAEFDWKYIQKSLESNINLV 147
>gi|380015551|ref|XP_003691764.1| PREDICTED: transmembrane protein 147-like isoform 1 [Apis florea]
Length = 229
Score = 150 bits (379), Expect = 4e-33, Method: Composition-based stats.
Identities = 72/98 (73%), Positives = 81/98 (82%), Gaps = 1/98 (1%)
Query: 1 MLILATFVPTTDNFSG-GVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT DN G G D+ G+ +K SIDL D VG LVL++IPGKGHAK+LTAGVGW
Sbjct: 50 MLALATFFPTADNVGGEGFDLIGEFLKSSIDLADLVGILLVLNNIPGKGHAKVLTAGVGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AGAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNI L+
Sbjct: 110 AGAEVLLTRFLLLWVGARGAEFDWKYIQKSLESNINLV 147
>gi|224083478|ref|XP_002307042.1| predicted protein [Populus trichocarpa]
gi|222856491|gb|EEE94038.1| predicted protein [Populus trichocarpa]
Length = 1081
Score = 150 bits (378), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 132/412 (32%), Positives = 206/412 (50%), Gaps = 55/412 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G LS L G+S + LL EK+ V+P+ K+ G E G+
Sbjct: 513 VEMARVTGVPLSFLLARGQSIKVLSQLLRKAKEKNLVIPNV-----KQAGSEQGK----- 562
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----VRML---- 541
Y G VLEPK GFY+K I +DF SLYPSI+ YN+C+ T+ VR L
Sbjct: 563 ------YEGATVLEPKAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPP 616
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQ 598
+ + T E + + GILP +++L+ +R++ KA +K+ P + L D RQ
Sbjct: 617 ECINKTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVL----DGRQ 672
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYE 649
ALK++ANS+YG G ++ +++ VT+ GR+++ +TK LVE+ N E
Sbjct: 673 LALKISANSVYGFTGATVAQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTILGGYEHNAE 732
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC--NKLYKQLELDIDGVYKYMLLLKKKKY 707
VIYGDTDS+M+ V ++ K+G + +EC K ++L+ + VY LL+ KK+Y
Sbjct: 733 VIYGDTDSVMVQFGVPTVEAAMKLGRE-AAECISGTFIKPIKLEFEKVYYPYLLISKKRY 791
Query: 708 AALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
A L +N + KG++ VRRD L + +IL +D +
Sbjct: 792 AGLF---WTNPDKFDKMDTKGIETVRRDNCLLVKNLVTECLHKIL---------IDRDVP 839
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+ +K +DL + L+LL ITK LTK + +V + L+ R R
Sbjct: 840 GAVQFVKNTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKR 891
>gi|81157941|dbj|BAE48221.1| DNA polymerase delta subunit [Chlorella pyrenoidosa]
Length = 1087
Score = 149 bits (376), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 117/391 (29%), Positives = 201/391 (51%), Gaps = 55/391 (14%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + +L K V+P N K G + GE
Sbjct: 517 VEMARVTGVPMSYLLARGQSIKVFSQILRKSRTKGLVVP------NMKRGGDAGEG---- 566
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----RMLQDSD 545
AY G VLEP+ G+YD+ + +DF SLYPSI+ +N+C+TT+ +M
Sbjct: 567 ----VAYEGATVLEPRAGYYDRPVATLDFASLYPSIMMAHNLCYTTLLPKGQEKMFPSEH 622
Query: 546 ITTLCEYLPEHQV------DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIR 597
+T + P + V G+LP +++L+ +R++ K M+ ++D ++ Y+ R
Sbjct: 623 LT----FTPNNDVFVKPSLAMGVLPEILQELLTARKRAKKDMET---ATDPFLRAVYNGR 675
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNY 648
Q ALK++ANS+YG G +++ VT+ GRE+++ T+ V+ + +
Sbjct: 676 QLALKVSANSVYGFTGATVGALPCLEISSSVTSFGREMIMETRRRVQERYCKANGYSHDA 735
Query: 649 EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKY 707
EVIYGDTDS+M+ V+D + ++G + +E +K + K ++L+ + VY LL+ KK+Y
Sbjct: 736 EVIYGDTDSVMVYFGVDDVAAAMQLGLEAAAEVSKAFIKPIKLEFEKVYNPYLLISKKRY 795
Query: 708 AALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
A L +K I + KG++ VRRD L + +IL E++ +
Sbjct: 796 AGLLWTKPEKWDKI---DTKGIETVRRDNCLLVRNVVTTCLEKILVERNPGEAC------ 846
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
E++K + +DL + L+LL I+K LT+
Sbjct: 847 ---EYVKGVISDLLMNKLDLSLLVISKGLTQ 874
>gi|352683087|ref|YP_004893611.1| DNA polymerase II [Thermoproteus tenax Kra 1]
gi|350275886|emb|CCC82533.1| DNA polymerase II [Thermoproteus tenax Kra 1]
Length = 785
Score = 149 bits (375), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 119/375 (31%), Positives = 188/375 (50%), Gaps = 50/375 (13%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP IQ+++V G L + R E+LL+ + V P N++E
Sbjct: 349 LLPFLIQLSSVSGIPLDQVAAASVGARVEWLLMRYAYRAGEVAP------NREE------ 396
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ-- 542
R Y G +VLEP+ G Y +L DF S+YPSII YN+ P L+
Sbjct: 397 ------RPYEPYKGAIVLEPRPGIYSDVAVL-DFTSMYPSIIMRYNLS----PDTYLEPG 445
Query: 543 DSDITTLCEYLPE-----HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 597
+ D PE + TG +P + LV+ RR+V+ M + + +S D R
Sbjct: 446 EPDPPEGVHVAPEVGHRFRRAPTGFIPQVLSSLVKLRREVRGAMLRIDPNSVEYKLLDER 505
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 657
Q+ALK+ AN+MYG +G+ +R++ + +A VTA R ILL+ L +VIYGDTDS
Sbjct: 506 QRALKIMANAMYGYMGWIGARWYKREVAESVTAYARSILLDVIKYARALGLDVIYGDTDS 565
Query: 658 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLS 716
L I N I +I NK Y ++E+ ++ +Y+ +L + KK+YA L L
Sbjct: 566 LFIKNN--------PIIEKIIDYVNKKY-EIEIKLEKIYRKILFTESKKRYAGL----LD 612
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY--SLDDRLQNIHEHMK 774
+G++ +I G +VVR DW +LA E VI IL Q + ++ + ++ I E++K
Sbjct: 613 DGRI----DIVGFEVVRGDWCELAKEVQLNVIEYILKSQDIKEAKSNVINYVKTIIENLK 668
Query: 775 KIRTDLDNGFVPLTL 789
+ + ++D+ + TL
Sbjct: 669 EYKVNIDDLIIWKTL 683
>gi|383847573|ref|XP_003699427.1| PREDICTED: transmembrane protein 147-like isoform 1 [Megachile
rotundata]
Length = 229
Score = 149 bits (375), Expect = 1e-32, Method: Composition-based stats.
Identities = 72/98 (73%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 1 MLILATFVPTTDNF-SGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT DN G D+ G+ +K SIDL D VG LVL+SIPGKGHAK+LTAGVGW
Sbjct: 50 MLALATFFPTADNVGEEGFDIVGEFLKSSIDLADLVGILLVLNSIPGKGHAKVLTAGVGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AGAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNI L+
Sbjct: 110 AGAEVLLTRFLLLWVGARGAEFDWKYIQKSLESNINLV 147
>gi|67602945|ref|XP_666513.1| DNA polymerase alpha, DNAPol alpha [Cryptosporidium hominis TU502]
gi|54657528|gb|EAL36288.1| DNA polymerase alpha, DNAPol alpha [Cryptosporidium hominis]
Length = 556
Score = 148 bits (374), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 97/216 (44%), Positives = 138/216 (63%), Gaps = 14/216 (6%)
Query: 593 QYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV-ENLNYEVI 651
Q +IRQ ALKLTANS+YGCLG+ NSRF+A+ LA+++T GR+IL TK V E +VI
Sbjct: 9 QLEIRQLALKLTANSLYGCLGYKNSRFYAKDLASIITFYGRQILQKTKLKVEEETKLQVI 68
Query: 652 YGDTDSLMISCNVND------YDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
YGDTDS+M++ N+ D Y V K+ +QIK NK Y +LELD+DGV + +LLLKKK
Sbjct: 69 YGDTDSIMVNTNIFDDGNGEGYSHVLKLASQIKQIVNKDYTKLELDLDGVLQRLLLLKKK 128
Query: 706 KYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
KYA + I ++ E KG+D+VRRDWS L + V +Q+L+ +++ +D
Sbjct: 129 KYACIQIVDFHRKQL--KLECKGLDLVRRDWSILT----RNVSTQLLNSL-FSNEPIDTV 181
Query: 766 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ NI ++ + L++ +PL ITK LTK P+
Sbjct: 182 ITNILNTLESLNEALNSNSIPLESFIITKTLTKLPQ 217
>gi|350409101|ref|XP_003488609.1| PREDICTED: transmembrane protein 147-like [Bombus impatiens]
Length = 229
Score = 148 bits (374), Expect = 1e-32, Method: Composition-based stats.
Identities = 72/98 (73%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 1 MLILATFVPTTDNFSG-GVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT DN G G D+ G+ +K SIDL D VG L L++IPGKGHAKILTAGVGW
Sbjct: 50 MLALATFFPTADNVGGEGYDLIGEFLKSSIDLADLVGILLSLNNIPGKGHAKILTAGVGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AGAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNI L+
Sbjct: 110 AGAEVLLTRFLLLWVGARGAEFDWKYIQKSLESNINLV 147
>gi|340712788|ref|XP_003394937.1| PREDICTED: LOW QUALITY PROTEIN: transmembrane protein 147-like
[Bombus terrestris]
Length = 229
Score = 148 bits (374), Expect = 1e-32, Method: Composition-based stats.
Identities = 72/98 (73%), Positives = 80/98 (81%), Gaps = 1/98 (1%)
Query: 1 MLILATFVPTTDNFSG-GVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT DN G G D+ G+ +K SIDL D VG L L++IPGKGHAKILTAGVGW
Sbjct: 50 MLALATFFPTADNVGGEGYDLIGEFLKSSIDLADLVGILLSLNNIPGKGHAKILTAGVGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AGAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNI L+
Sbjct: 110 AGAEVLLTRFLLLWVGARGAEFDWKYIQKSLESNINLV 147
>gi|307169632|gb|EFN62215.1| Transmembrane protein 147 [Camponotus floridanus]
Length = 229
Score = 148 bits (374), Expect = 1e-32, Method: Composition-based stats.
Identities = 71/98 (72%), Positives = 79/98 (80%), Gaps = 1/98 (1%)
Query: 1 MLILATFVPTTDNF-SGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT DN G DVFG+ +K SIDL D G LVL+ IPGKGHAK+LTAG+GW
Sbjct: 50 MLALATFFPTADNVGEEGFDVFGEFLKSSIDLADLAGILLVLNGIPGKGHAKVLTAGIGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AGAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNI L+
Sbjct: 110 AGAEVLLTRFLLLWVGARGAEFDWKYIQKSLESNINLV 147
>gi|296109913|ref|YP_003616862.1| DNA polymerase Pol2 [methanocaldococcus infernus ME]
gi|295434727|gb|ADG13898.1| DNA polymerase Pol2 [Methanocaldococcus infernus ME]
Length = 757
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/330 (31%), Positives = 173/330 (52%), Gaps = 29/330 (8%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL + + + VL S+ E+LL+ ++ +Y++P NK EE
Sbjct: 324 LPLEVMFSRIINQVLFEVTRMSSSQMVEYLLMKRAYKLNYIVP------NKPSEEEY--- 374
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
K R +Y GG V EP KG ++ I+ +DF SLYPSII YNI T+ ++
Sbjct: 375 ---KRRVAESYEGGYVKEPIKGIHEN-IVYLDFKSLYPSIIISYNISPDTLDCPCCKEES 430
Query: 546 ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 605
L + + ++ G++P +K LV R ++K +K+ D L+ Y+ Q++LK+ A
Sbjct: 431 EKILGHWFCKRRI--GLIPMTVKDLVRRRVEIKERLKK---EKDKLLNYE--QQSLKILA 483
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN 665
NS+YG L +P +RF+ + A ++T GR+ ++ T E + V+Y DTD + ++
Sbjct: 484 NSVYGYLAYPRARFYNKVCAEIITFLGRKYIMETIKEAEVFGFTVLYADTDGIFLTIKGE 543
Query: 666 DYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQ 724
+ +++ K + N KL + +EL+ +G Y + + KKKYA ++ G++I
Sbjct: 544 NKEAILKKAYNFLNHINSKLPEDMELEFEGFYSRGIFITKKKYALIT----EEGEII--- 596
Query: 725 EIKGVDVVRRDWSQLASEAGKFVISQILDE 754
IKG++ VRRDWS +A K V+ +L E
Sbjct: 597 -IKGLEYVRRDWSGIAKRTQKEVLEALLKE 625
>gi|379318583|pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase
gi|379318584|pdb|4AHC|B Chain B, Crystal Structure Of An Evolved Replicating Dna Polymerase
gi|379318587|pdb|4AIL|C Chain C, Crystal Structure Of An Evolved Replicating Dna Polymerase
Length = 775
Score = 148 bits (373), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 118/380 (31%), Positives = 194/380 (51%), Gaps = 44/380 (11%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP+ IQ++ + G L E+ LL +E++ V P NK EE
Sbjct: 327 LPMEIQLSRLIGQPLWDVSRSSTGNLVEWFLLRKAYERNEVAP------NKPSEEEY--- 377
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
+ R + +Y+GG V EP+KG +D I+ +DF +LYPSII +N+ T+ + ++ D
Sbjct: 378 ---QRRLRESYTGGFVKEPEKGLWDD-IVYLDFIALYPSIIITHNVSPDTLNLEGCKNYD 433
Query: 546 ITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
I C+ +P G +PS + L+E R+++K MK+ + ++ D RQKA
Sbjct: 434 IAPQVGHKFCKDIP------GFIPSLLGHLLEERQKIKTKMKETQDPIEKIL-LDYRQKA 486
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLNYEVIYGDTDSLM 659
+KL ANS YG G+ +R++ + A VTA GR+ + L K L E ++V+Y DTD L
Sbjct: 487 IKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYIDTDGLH 546
Query: 660 ISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
+ + + + K + N KL LEL+ +G YK + KK+YA + G
Sbjct: 547 ATIPGGESEEIKKKALEFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVID----EEG 602
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
K+I +G+++VRRDWS++A E V+ IL +++ ++ + E ++K
Sbjct: 603 KVIT----RGLEIVRRDWSEIAKETQARVLETILKHG-----DVEEAVRIVKEVIQK--- 650
Query: 779 DLDNGFVPLTLLEITKQLTK 798
L N +P L I +Q+T+
Sbjct: 651 -LANYEIPPEKLAIYEQITR 669
>gi|18976584|ref|NP_577941.1| DNA-directed DNA polymerase [Pyrococcus furiosus DSM 3638]
gi|397650711|ref|YP_006491292.1| DNA-directed DNA polymerase [Pyrococcus furiosus COM1]
gi|48428875|sp|P61875.1|DPOL_PYRFU RecName: Full=DNA polymerase; AltName: Full=Pfu polymerase
gi|48428876|sp|P61876.1|DPOL_PYRWO RecName: Full=DNA polymerase; AltName: Full=Pwo polymerase
gi|216918|dbj|BAA02362.1| DNA polymerase [Pyrococcus furiosus]
gi|2347063|gb|AAB67984.1| DNA-dependent DNA polymerase [Pyrococcus woesei]
gi|18892147|gb|AAL80336.1| DNA-directed DNA polymerase [Pyrococcus furiosus DSM 3638]
gi|393188302|gb|AFN03000.1| DNA-directed DNA polymerase [Pyrococcus furiosus COM1]
Length = 775
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 194/380 (51%), Gaps = 44/380 (11%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP+ IQ++ + G L E+ LL +E++ V P NK EE
Sbjct: 327 LPMEIQLSRLVGQPLWDVSRSSTGNLVEWFLLRKAYERNEVAP------NKPSEEEY--- 377
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
+ R + +Y+GG V EP+KG ++ I+ +DF +LYPSII +N+ T+ + ++ D
Sbjct: 378 ---QRRLRESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNVSPDTLNLEGCKNYD 433
Query: 546 ITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
I C+ +P G +PS + L+E R+++K MK+ + ++ D RQKA
Sbjct: 434 IAPQVGHKFCKDIP------GFIPSLLGHLLEERQKIKTKMKETQDPIEKIL-LDYRQKA 486
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLNYEVIYGDTDSLM 659
+KL ANS YG G+ +R++ + A VTA GR+ + L K L E ++V+Y DTD L
Sbjct: 487 IKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYIDTDGLY 546
Query: 660 ISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
+ + + + K + N KL LEL+ +G YK + KK+YA + G
Sbjct: 547 ATIPGGESEEIKKKALEFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVID----EEG 602
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
K+I +G+++VRRDWS++A E V+ IL +++ ++ + E ++K
Sbjct: 603 KVIT----RGLEIVRRDWSEIAKETQARVLETILKHG-----DVEEAVRIVKEVIQK--- 650
Query: 779 DLDNGFVPLTLLEITKQLTK 798
L N +P L I +Q+T+
Sbjct: 651 -LANYEIPPEKLAIYEQITR 669
>gi|323454621|gb|EGB10491.1| hypothetical protein AURANDRAFT_23037 [Aureococcus anophagefferens]
Length = 1057
Score = 147 bits (372), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 210/424 (49%), Gaps = 70/424 (16%)
Query: 408 FTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+ + S +I++M +L VL +++ V G L L G+ + +LL + ++
Sbjct: 457 YCLKDSYLVIQLMTKLAVLINYVEMARVTGVPLDFLLSRGQQIKVFSMLLRRCRASNLLV 516
Query: 468 PDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527
P+ K+ +G+ A + G V+EPKK FY++ I +DF SLYPSI+Q
Sbjct: 517 PN--LAKHGNDGD-------------AKFEGATVIEPKKAFYEEPIATLDFASLYPSIMQ 561
Query: 528 EYNICFTTIPVRMLQDSD------ITTLCEYLPE-----HQVDT-----GILPSEIKKLV 571
YN+C++TI + QD++ T + P+ H T G+LP + L+
Sbjct: 562 AYNLCYSTILTK--QDAERHFPGGADTAYQAGPQCVDGVHHFVTAKTKRGVLPQILADLL 619
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
+R++ KA MK+ D +Q + RQ ALK++ANS+YG G + P+A+ VTA
Sbjct: 620 AARKRAKADMKKATDPMDKAVQ-NGRQLALKISANSVYGFTGAAVGQLPCLPIASTVTAY 678
Query: 632 GREILLNTKSLVENL---------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN 682
GR +L TK VE+ + EV+YGDTDS+M++ D + + +E
Sbjct: 679 GRTLLHRTKDFVESTYTKENGYAADAEVVYGDTDSVMVNFGFGDVAATLPKAEVVAAEVT 738
Query: 683 KLY-KQLELDIDGVYKYMLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQLA 740
K++ ++L+ + VY LL+ KK+YA L ++ ++ M C KG++ VRRD L
Sbjct: 739 KIFPPPVKLEFEKVYFPYLLMNKKRYAGLLWTRPETHDYMDC----KGLETVRRDNCLLV 794
Query: 741 SEAGKFVISQILDEQ------SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITK 794
+ + +I+ E+ +Y ++ D LQN KI ++LL ITK
Sbjct: 795 RQLIDGCLRKIIIERDTNAAIAYAKRAIGDLLQN------KID---------ISLLVITK 839
Query: 795 QLTK 798
L+K
Sbjct: 840 SLSK 843
>gi|393222031|gb|EJD07515.1| hypothetical protein FOMMEDRAFT_164466 [Fomitiporia mediterranea
MF3/22]
Length = 1062
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 202/403 (50%), Gaps = 57/403 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N I++ V G L G+S + LL +++ Y+ P + G +
Sbjct: 481 KLMCFVNY----IEMARVTGVPFHFLLQRGQSIKVLSQLLRRANDEGYITPTLKGGGTDE 536
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 537 Q-----------------YEGATVIEPKKGYYDAPIATLDFSSLYPSIMMAHNLCYTTLL 579
Query: 538 VRMLQD-SDITTLCEYLPEHQVDT--------GILPSEIKKLVESRRQVKALMKQPNLSS 588
+ D ++ +Y+ D G+LPS ++ L+ +R++ KA +K+ +
Sbjct: 580 DKHTIDRLNLVKGVDYIQTPNNDFFVTKEKRKGLLPSVLEDLIAARKRAKADLKK---ET 636
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN- 645
D D RQ ALK++ANS+YG G + P+++ VTA GR+++ TK VE
Sbjct: 637 DPFRRAVLDGRQLALKISANSVYGFTGATIGKLPCLPISSSVTAYGRQMIEKTKQEVEAE 696
Query: 646 --------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVY 696
N EVIYGDTDS+M+ +D +V ++G++ K K ++L+ + VY
Sbjct: 697 YCIANGREHNAEVIYGDTDSVMVKFGPSDLATVMQMGSEAADLVTAKFIKPIKLEFEKVY 756
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +K + S KG++ VRRD +L S + + ++L
Sbjct: 757 FPYLLINKKRYAGLYWTKTDKYDKMDS---KGIETVRRDNCRLVSTVIETCLHKML---- 809
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+D ++ +++K++ +DL + ++ L ITK L K
Sbjct: 810 -----IDRDVKGAEDYVKQVISDLLQNKIDMSQLVITKALAKT 847
>gi|185177517|pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase
Length = 775
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 194/380 (51%), Gaps = 44/380 (11%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP+ IQ++ + G L E+ LL +E++ V P NK EE
Sbjct: 327 LPMEIQLSRLVGQPLWDVSRSSTGNLVEWFLLRKAYERNEVAP------NKPSEEEY--- 377
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
+ R + +Y+GG V EP+KG ++ I+ +D+ SLYPSII +N+ T+ + ++ D
Sbjct: 378 ---QRRLRESYTGGFVKEPEKGLWEN-IVYLDYKSLYPSIIITHNVSPDTLNLEGCKNYD 433
Query: 546 ITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
I C+ +P G +PS + L+E R+++K MK+ + ++ D RQKA
Sbjct: 434 IAPQVGHKFCKDIP------GFIPSLLGHLLEERQKIKTKMKETQDPIEKIL-LDYRQKA 486
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLNYEVIYGDTDSLM 659
+KL ANS YG G+ +R++ + A VTA GR+ + L K L E ++V+Y DTD L
Sbjct: 487 IKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYIDTDGLY 546
Query: 660 ISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
+ + + + K + N KL LEL+ +G YK + KK+YA + G
Sbjct: 547 ATIPGGESEEIKKKALEFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVID----EEG 602
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
K+I +G+++VRRDWS++A E V+ IL +++ ++ + E ++K
Sbjct: 603 KVIT----RGLEIVRRDWSEIAKETQARVLETILKHG-----DVEEAVRIVKEVIQK--- 650
Query: 779 DLDNGFVPLTLLEITKQLTK 798
L N +P L I +Q+T+
Sbjct: 651 -LANYEIPPEKLAIYEQITR 669
>gi|332028725|gb|EGI68756.1| DNA polymerase delta catalytic subunit [Acromyrmex echinatior]
Length = 1010
Score = 147 bits (371), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 200/411 (48%), Gaps = 64/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + + +++ V G +S L G+ + LL EK Y++P Q
Sbjct: 431 KLMCII----IYMEMARVTGVSISSLLTRGQQIKVVSQLLRKTREKDYLMPVHQ------ 480
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G T E + G V+EPK+G+Y+ I +DF+SLYPSII +N+C+TT+
Sbjct: 481 -GHGTDEQ----------FEGATVIEPKRGYYNDPIATLDFSSLYPSIIMAHNLCYTTLL 529
Query: 538 VRM------LQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+Q+ ITT ++ V GILP ++ L+ +R++ K +KQ +D
Sbjct: 530 TIAKKKELNIQEDQITTTPSKSLFIKNSVRKGILPEILENLLVARKKAKTELKQ---ETD 586
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK VE+
Sbjct: 587 PLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRTMIEQTKQEVEDHF 646
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ VIYGDTDS+M+ V D + K+G + +K K ++L+ + VY
Sbjct: 647 RIENGYKNDAMVIYGDTDSVMVKFGVKDIEDAMKLGKEAADYVTSKFIKPIKLEFEKVYF 706
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE-- 754
LL+ KK+YA L +K KM C KG++ VRRD L + + +L E
Sbjct: 707 PYLLINKKRYAGLYFTKPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQILLIERN 762
Query: 755 -QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+ DY+ K++ +DL + L+ L ITK+LTK K
Sbjct: 763 PHAAVDYA------------KQVISDLLCNRIDLSQLVITKELTKTDYAAK 801
>gi|336380987|gb|EGO22139.1| hypothetical protein SERLADRAFT_451027 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1062
Score = 147 bits (370), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 208/409 (50%), Gaps = 58/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N I+++ V G + L G+S + L +E+ YV+P
Sbjct: 480 KLMCFVNY----IEMSRVTGVPFNFLLSRGQSIKVLSQLFRKANEEGYVVP------ALL 529
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+GE T E Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 530 KGEGTDEQ----------YEGATVIEPKKGYYDSPIATLDFSSLYPSIMMAHNLCYTTLL 579
Query: 538 -------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PN 585
+++++D D T ++ G+LP+ ++ L+ +R++ KA +K+ P
Sbjct: 580 DKTTIDRLQLVKDVDYIQTPNNDFFATTSRRKGLLPTVLEDLISARKRAKADLKKETDPF 639
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE- 644
+ L D RQ ALK++ANS+YG G + +++ VT+ GR+++ TK VE
Sbjct: 640 KCAVL----DGRQLALKISANSVYGFTGATIGKLPCLAISSSVTSYGRQMIEKTKQEVEA 695
Query: 645 --------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGV 695
+ N EVIYGDTDS+M+ + V +G++ + K ++L+ + V
Sbjct: 696 EYCVANGHDHNAEVIYGDTDSVMVKFGPAELTKVMALGSEAADLVTARFVKPIKLEFEKV 755
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
Y LL+ KK+YA L +K + S KG++ VRRD +L S + + ++L
Sbjct: 756 YFPYLLISKKRYAGLYWTKPEKYDKMDS---KGIETVRRDNCRLVSTVIETCLHKML--- 809
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ ++ K++ +DL V ++ L ITK L+KA GK
Sbjct: 810 ------IDRDVKGAEDYTKRVISDLLQNKVDMSQLVITKALSKAEYSGK 852
>gi|403333149|gb|EJY65649.1| DNA polymerase [Oxytricha trifallax]
Length = 1272
Score = 146 bits (369), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 105/319 (32%), Positives = 169/319 (52%), Gaps = 29/319 (9%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDI-----TTL 549
Y G +V+EP +GFY + ++DF SLYPSI+ +N+C++T +P L+D D+ T
Sbjct: 748 YEGAVVIEPIRGFYQDPVAILDFASLYPSIMMAHNLCYSTLVPPYKLKDIDVSMYERTPN 807
Query: 550 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
+Y + V G+LP +++L+++RR+VK+ +++ ++ + D RQ ALK +ANS+Y
Sbjct: 808 GDYFVKKSVKKGVLPIILEELIQARRRVKSELQRTTDPYEIKI-LDSRQNALKTSANSVY 866
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV-------ENLNY--EVIYGDTDSLMI 660
G G + P++ VTA GR +L TK+LV E Y EVIYGDTDS+MI
Sbjct: 867 GFTGAQVGQLPCLPISCSVTAYGRRMLDMTKNLVKEKFSVKEGYQYDSEVIYGDTDSVMI 926
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKLSNGK 719
+ +G + + ++L+ + +Y LL+ KK+YA L +
Sbjct: 927 KFGCKTIEETMVLGKEAAEYVTSFFADPIKLEFEKIYCPYLLMNKKRYAGLLWTNPIKYD 986
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
I + KG++ VRRD L + V+ +IL E+SY D + K + +D
Sbjct: 987 KI---DAKGIETVRRDNCPLVKDVVNTVLKKILVERSYEDAI---------NYCKGVISD 1034
Query: 780 LDNGFVPLTLLEITKQLTK 798
L + L+LL IT+ L K
Sbjct: 1035 LLQNRIDLSLLVITRGLGK 1053
>gi|410670688|ref|YP_006923059.1| DNA polymerase Pol2 [Methanolobus psychrophilus R15]
gi|409169816|gb|AFV23691.1| DNA polymerase Pol2 [Methanolobus psychrophilus R15]
Length = 913
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 114/387 (29%), Positives = 194/387 (50%), Gaps = 48/387 (12%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
I+ FI + S ++++ +L +L I + V G++L + GG++ + LLL +
Sbjct: 366 ILRFIDYAQRDSDLAMELLMKLRLLDKYIAVAQVSGSLLQEVVDGGQTSMVDNLLLREYG 425
Query: 462 EKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSL 521
++ V+P K + E + +G K GG VLEPKKG + II+MD+ SL
Sbjct: 426 KRDRVIPPK-----PSDDEVSFRNLSSEGLK-----GGEVLEPKKGLLEN-IIIMDYKSL 474
Query: 522 YPSIIQEYNICFTTIPVRMLQDSDIT---TLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
YP+I+ +N+C+TT+ + + + E++P +V G++P+ ++ L+ R + K
Sbjct: 475 YPTIMMAHNLCYTTVVEKDRPKGETIKPPSGGEFVPA-EVFKGVMPAILENLLNRRIETK 533
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
M+ + + D Q ALK+ NS YG G+ +R ++ PLA VT+ GRE +LN
Sbjct: 534 KRMRSAATEEEHRV-LDATQLALKILLNSFYGYSGYTRARLYSLPLANAVTSFGRENILN 592
Query: 639 TKSLVEN---------------------------LNYEVIYGDTDSLMISCNV-ND--YD 668
T+S++ ++ V+YGDTDS+ + C ND D
Sbjct: 593 TRSIINGTINKVILRDSKVLFTEEVDTPKTGDRMISLSVVYGDTDSVFVQCTSKNDISLD 652
Query: 669 SVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIK 727
+GN+I + L +EL+ + + K LLL KK+YA + +G S ++K
Sbjct: 653 DAGLVGNRIAGTVSASLPDPMELEFESIAKRGLLLAKKRYAIWVFERSGDGWK-DSIKVK 711
Query: 728 GVDVVRRDWSQLASEAGKFVISQILDE 754
G++ VRRDW +L S+ V+ +L E
Sbjct: 712 GMETVRRDWCELTSKTLNRVLELVLKE 738
>gi|322801992|gb|EFZ22529.1| hypothetical protein SINV_03834 [Solenopsis invicta]
Length = 1072
Score = 146 bits (368), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 130/411 (31%), Positives = 198/411 (48%), Gaps = 64/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + + +++ V G +S L G+ + LL EK Y++P Q
Sbjct: 493 KLMCII----IYMEMARVTGVSISSLLTRGQQIKVVSQLLRKTKEKDYLMPVHQ------ 542
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G T E + G V+EPK+G+Y+ I +DF+SLYPSII +N+C+TT+
Sbjct: 543 -GHGTDEQ----------FEGATVIEPKRGYYNDPIATLDFSSLYPSIIMAHNLCYTTLL 591
Query: 538 VRM------LQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+Q+ ITT + + GILP ++ L+ +R++ KA +KQ +D
Sbjct: 592 TVAKKKELNIQEDQITTTPSNSLFIKSTIRKGILPEILENLLSARKKAKAELKQ---ETD 648
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK VEN
Sbjct: 649 PLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRTMIERTKQEVENHF 708
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ VIYGDTDS+M+ V + +G + +K K ++L+ + VY
Sbjct: 709 RIENGYKNDAMVIYGDTDSVMVKFGVKAIEDAMVLGKEAADYVTSKFIKPIKLEFEKVYF 768
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE-- 754
LL+ KK+YA L +K KM C KG++ VRRD L + + +L E
Sbjct: 769 PYLLINKKRYAGLYFTKPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQILLIERN 824
Query: 755 -QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
S DY+ K++ +DL + L+ L ITK+LTK K
Sbjct: 825 PHSAIDYA------------KQVISDLLCNRIDLSQLVITKELTKTDYAAK 863
>gi|396082048|gb|AFN83661.1| DNA polymerase catalytic subunit delta [Encephalitozoon romaleae
SJ-2008]
Length = 959
Score = 146 bits (368), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 123/401 (30%), Positives = 202/401 (50%), Gaps = 53/401 (13%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+++ LNVL +++ V G + G + + L+ ++ +++P+
Sbjct: 387 LRLFSTLNVLINYTELSRVTGVPIEYFFTRGTAIKIFALIYRTAAKEDFIVPEI------ 440
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ E+NK ++ GG V+EPK+GFY+K + +MDF+SLYPSI+ N+C+TT+
Sbjct: 441 ----DPFESNK-------SFEGGFVIEPKRGFYNKPVSVMDFSSLYPSIMISNNLCYTTL 489
Query: 537 PV----RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSD 589
R+L T Y + G+LP + L++SR+++K +K+ P L +
Sbjct: 490 LTKEQYRVLGGIKTPT-DNYFCSAETKKGLLPRILIDLLDSRKRIKEELKKEKDPALKAC 548
Query: 590 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYE 649
L + RQ A+KL ANS+YG G R ++ VT GRE++ TK+L+E N+
Sbjct: 549 L----NGRQLAVKLCANSLYGFTGASKGRLPCFEISQSVTGFGREMINFTKNLIEE-NFS 603
Query: 650 ----------VIYGDTDSLMISCNVNDYDSVFKIGNQI-KSECNKLYKQLELDIDGVYKY 698
VIYGDTDS+MI N D VF++ +I + K K + L+ + VY
Sbjct: 604 KKNGYTHDSVVIYGDTDSVMIDFNEEDIGKVFEMSKEISRFITTKFVKPVSLEFEKVYYP 663
Query: 699 MLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
LL+ KK+YA L S + I + +G++ VRRD L E + V+ IL +++
Sbjct: 664 YLLINKKRYAGLLYSNPDSPSKI---DTRGIETVRRDNCGLVKEVVETVLEMILYQRN-- 718
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
++ +K + DL G + L+LL I+K LTK
Sbjct: 719 -------VEKAKRFVKSVVGDLYLGRIDLSLLVISKSLTKT 752
>gi|168019806|ref|XP_001762435.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686513|gb|EDQ72902.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1173
Score = 145 bits (367), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 209/412 (50%), Gaps = 54/412 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL ++++VLP+ K +G GE
Sbjct: 589 VEMARVTGVPISFLLARGQSIKVLSQLLRKSKQRNFVLPNV-----KSQGAGGGET---- 639
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR-------MLQ 542
+ G VL+ K G+YDK I +DF SLYPSI+ YN+C+ T+ VR ML
Sbjct: 640 ------FEGATVLDAKAGYYDKPIATLDFASLYPSIMMAYNLCYCTL-VRAEDLQKFMLG 692
Query: 543 DSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQ 598
++T + + ++ GILP +++L+ +R++ KA +K+ ++D L D RQ
Sbjct: 693 PEEVTKTPSGDVFVKPSLEKGILPEILEELLAARKRAKADLKE---ATDPLEKAVLDGRQ 749
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYE 649
ALK++ANS+YG G + +++ VT+ GR+++ +TK LV+ + + E
Sbjct: 750 LALKVSANSVYGFTGATVGQLPCLEISSSVTSFGRQMIDHTKKLVQERFNTSNSYSYDAE 809
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYA 708
VIYGDTDS+M+ D D K+G + + + + K ++L+ + VY LL+ KK+YA
Sbjct: 810 VIYGDTDSVMVQFGTPDVDEAMKLGREAAQQISATFTKPIKLEFEKVYWPYLLISKKRYA 869
Query: 709 ALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
L +K KM + KG++ VRRD L + +IL +D +
Sbjct: 870 GLLWTKPEKYDKM----DTKGIETVRRDNCLLVKNLITECLHKIL---------IDRDIP 916
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+++K +DL + L+LL ITK LTKA + + + L+ R R
Sbjct: 917 GAVQYVKNTISDLLMNRMDLSLLVITKGLTKAGDAYESKTAHVELAERMRKR 968
>gi|336476181|ref|YP_004615322.1| DNA polymerase Pol2 [Methanosalsum zhilinae DSM 4017]
gi|335929562|gb|AEH60103.1| DNA polymerase Pol2 [Methanosalsum zhilinae DSM 4017]
Length = 905
Score = 145 bits (367), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 53/379 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+ + + G++ L GG++ E LLL F + YVLP + +
Sbjct: 384 VALAQISGSLPQEILEGGQTSMVENLLLREFRKHDYVLPPRP----------DENIVSSR 433
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT-- 547
R+ GG VLEPKKG +K +IL D+ SLYP+I+ +N+C+TT+ D +I
Sbjct: 434 NRESEGLKGGEVLEPKKGLLEKVVIL-DYKSLYPTIMMAHNLCYTTVIDIERPDGNIIKP 492
Query: 548 -TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTAN 606
+ E++ +V GI+PS ++ L+ R + K LMK + D YD Q ALK+ N
Sbjct: 493 PSGGEFV-SAEVFRGIVPSILENLLNRRTETKGLMKGAK-TEDEYRVYDATQLALKILLN 550
Query: 607 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--------------------- 645
S YG G+ +R ++ LA VT+ GRE +L T+S+VE
Sbjct: 551 SFYGYSGYTRARLYSLALANAVTSFGRENILKTRSVVEKEIETVILREGKAYLKEEVTSK 610
Query: 646 ------LNYEVIYGDTDSLMISCNVN---DYDSVFKIGNQIKS-ECNKLYKQLELDIDGV 695
+ V+YGDTDS+ + C+ + + V +GN+I + L +EL+ + +
Sbjct: 611 DTDDVIVKLSVVYGDTDSVFVQCSSETNLELEDVELVGNRIAGIVSHSLPDPMELEFESI 670
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL--- 752
+ L + KK+Y AL + + S + S ++KG++ VRRDW +L S V+ IL
Sbjct: 671 AERALFIAKKRY-ALWMFERSGTEWSESIKVKGMETVRRDWCELTSRTLNSVLELILKEG 729
Query: 753 DEQSYTDY--SLDDRLQNI 769
D + +Y + DR++NI
Sbjct: 730 DVEKAMEYVRGVVDRVRNI 748
>gi|336368221|gb|EGN96564.1| hypothetical protein SERLA73DRAFT_58496 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1084
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 207/409 (50%), Gaps = 58/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N I+++ V G + L G+S + L +E+ YV+P
Sbjct: 502 KLMCFVNY----IEMSRVTGVPFNFLLSRGQSIKVLSQLFRKANEEGYVVP------ALL 551
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+GE T E Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 552 KGEGTDEQ----------YEGATVIEPKKGYYDSPIATLDFSSLYPSIMMAHNLCYTTLL 601
Query: 538 -------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PN 585
+++++D D T ++ G+LP+ ++ L+ +R++ KA +K+ P
Sbjct: 602 DKTTIDRLQLVKDVDYIQTPNNDFFATTSRRKGLLPTVLEDLISARKRAKADLKKETDPF 661
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE- 644
+ L D RQ ALK++ANS+YG G + +++ VT+ GR+++ TK VE
Sbjct: 662 KCAVL----DGRQLALKISANSVYGFTGATIGKLPCLAISSSVTSYGRQMIEKTKQEVEA 717
Query: 645 --------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGV 695
+ N EVIYGDTDS+M+ + V +G + + K ++L+ + V
Sbjct: 718 EYCVANGHDHNAEVIYGDTDSVMVKFGPAELTKVMALGIEAADLVTARFVKPIKLEFEKV 777
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
Y LL+ KK+YA L +K + S KG++ VRRD +L S + + ++L
Sbjct: 778 YFPYLLISKKRYAGLYWTKPEKYDKMDS---KGIETVRRDNCRLVSTVIETCLHKML--- 831
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ ++ K++ +DL V ++ L ITK L+KA GK
Sbjct: 832 ------IDRDVKGAEDYTKRVISDLLQNKVDMSQLVITKALSKAEYSGK 874
>gi|336121549|ref|YP_004576324.1| DNA polymerase Pol2 [Methanothermococcus okinawensis IH1]
gi|334856070|gb|AEH06546.1| DNA polymerase Pol2 [Methanothermococcus okinawensis IH1]
Length = 810
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 201/408 (49%), Gaps = 56/408 (13%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL + + + L G S+ E+LLL + +++ P++ + ++
Sbjct: 358 LPLEVMFSRIVNQTLFEVSRMGSSQMVEYLLLKHSFKNNFLAPNRPSNREYQK------- 410
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R + Y GG V EP KG ++ I+ MDF +LYPSII YNI TI + +D
Sbjct: 411 -----RLREYYEGGYVKEPIKGMHEN-IVSMDFRALYPSIIISYNISPDTIDCKCCEDMS 464
Query: 546 ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN-----LSSDL---------L 591
L + + ++ G++P ++ L+E R+ +K ++K+ + L+S L
Sbjct: 465 EKILGHWFCKKRI--GLIPMVLRNLIERRKTIKKILKEKDTEKKELNSKNNKYYNEYYKL 522
Query: 592 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVI 651
+ Y+ QK+LK+ ANS YG + +P +R++++ A ++T GR + T E ++VI
Sbjct: 523 LNYE--QKSLKILANSHYGYMAYPRARWYSKECAEVITHLGRTYIQKTIEEAEKYGFKVI 580
Query: 652 YGDTDSLMISCNVND-----YDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
Y DTD L N N + ++ N+I KL K +EL+ +G YK + + KK+
Sbjct: 581 YADTDGLYAVLNENSDKKTLLNKTYEFLNKINE---KLPKDMELEFEGYYKRGIFITKKR 637
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 766
YA + N K+ IKG++ VRRDWS +A + K V+ +L E + ++
Sbjct: 638 YALID----ENDKI----TIKGLEFVRRDWSNIAKKTQKAVLEILLKEGNV------EKA 683
Query: 767 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSR 814
+NI +K I TDL NG + L I QLTK K + +++
Sbjct: 684 KNI---IKNIITDLKNGKIDKKDLIIYTQLTKDINEYKTTAPHVEVAK 728
>gi|430812887|emb|CCJ29720.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1088
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 115/332 (34%), Positives = 179/332 (53%), Gaps = 50/332 (15%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL------ 549
Y G V+EPKKG+Y+ I+ +DF+SLYPSI+Q +N+C+TT +L I TL
Sbjct: 568 YEGATVIEPKKGYYNVPIVTLDFSSLYPSIMQAHNLCYTT----LLNYKQIETLGFEKDK 623
Query: 550 --CEYLPEH------QVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQ 598
C PE+ + G+LP + L+ +R++VK +K P + L D RQ
Sbjct: 624 DYC-VTPENYCFVKSHIRKGLLPQIFENLLAARQKVKIDLKNETDPFKKAVL----DGRQ 678
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL------LNTKSLVENLNYE--- 649
ALK++ANS+YG G N + P+++ VT+ GR+++ + K +EN Y
Sbjct: 679 LALKISANSVYGFTGATNGKLPCLPISSSVTSYGRQMIERAKEEIELKYTIEN-GYSHKA 737
Query: 650 -VIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKY 707
VIYGDTDS+MI+ V D K+G + NKL K ++L+ + VY LL+ KK+Y
Sbjct: 738 YVIYGDTDSVMINFGVKDISESMKLGYEAADYVTNKLIKPIKLEFEKVYFPYLLISKKRY 797
Query: 708 AALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
A L +K I S KG++ +RRD +L S + ++ ++L +Q D Q
Sbjct: 798 AGLFWTKPETFDKIDS---KGIETIRRDNCRLVSTVIETILRKLLIDQDV------DGAQ 848
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
N ++K++ +DL + ++ L ITK LTK+
Sbjct: 849 N---YVKRVISDLLQNKIDMSNLVITKTLTKS 877
>gi|807830|dbj|BAA07580.1| DNA polymerase [Pyrodictium occultum]
Length = 803
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 194/380 (51%), Gaps = 51/380 (13%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP AIQ++ V G L + G R E+ L+ A ++ + ++P N+ E
Sbjct: 366 MLPFAIQLSTVTGVPLDQVGAMGVGFRLEWYLMRAAYDMNELVP------NRVE------ 413
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 544
R+ +Y G +VL+P KG ++ ++L DF+S+YPSI+ +YN+ TI V +
Sbjct: 414 ------RRGESYKGAVVLKPLKGVHENVVVL-DFSSMYPSIMIKYNVGPDTI-VDDPSEC 465
Query: 545 DITTLCEYLPE--HQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599
C PE H+ G + ++ L++ RRQVK MK+ S YD RQK
Sbjct: 466 PKYGGCYVAPEVGHRFRRSPPGFFKTVLENLLKLRRQVKEKMKEFPPDSPEYRLYDERQK 525
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
ALK+ AN+ YG +G+ ++R++ + A VTA GR ++L L +VIYGDTDSL
Sbjct: 526 ALKVLANASYGYMGWSHARWYCKRCAEAVTAWGRNLILTAIEYARKLGLKVIYGDTDSLF 585
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNG 718
+ V D + V K+ ++ E E+ ID +YK + + KK+Y L L +G
Sbjct: 586 V---VYDKEKVEKLIEFVEKELG-----FEIKIDKIYKKVFFTEAKKRYVGL----LEDG 633
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
++ +I G + VR DW +LA E + +L+ ++D + I E +K++R
Sbjct: 634 RI----DIVGFEAVRGDWCELAKEVQEKAAEIVLNTG-----NVDKAISYIREVIKQLR- 683
Query: 779 DLDNGFVPLTLLEITKQLTK 798
G VP+T L I K L+K
Sbjct: 684 ---EGKVPITKLIIWKTLSK 700
>gi|389745703|gb|EIM86884.1| hypothetical protein STEHIDRAFT_79581, partial [Stereum hirsutum
FP-91666 SS1]
Length = 1077
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 209/408 (51%), Gaps = 57/408 (13%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+S + L +++ YV+P
Sbjct: 496 KLMCFVNYTEMA-RVTGVPFNYL---LSRGQSIKVLSQLFRKANDEGYVVP--------- 542
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ KG+G + Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 543 -------SLKGEGSDEQ-YEGATVIEPKKGYYDAPIATLDFSSLYPSIMMAHNLCYTTLL 594
Query: 538 -------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ + +D D T ++ + G+LP+ ++ L+ +R++ KA +K +
Sbjct: 595 DKNTIDRLNLQKDIDYIQTPNNDFFIKSHKRKGLLPTVLEDLIGARKRAKADLKN---ET 651
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D D RQ ALK++ANS+YG G + P+++ VT+ GR+++ TKS VE
Sbjct: 652 DPFKRAVLDGRQLALKVSANSVYGFTGATIGKLPCLPISSSVTSYGRQMIEKTKSEVEAE 711
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVY 696
+ + +VIYGDTDS+M+ D + V ++G++ K K ++L+ + VY
Sbjct: 712 YCVANGHSHDAKVIYGDTDSVMVKFGPPDLEKVMQLGSEAAEFVTQKFVKPIKLEFEKVY 771
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ + S KG++ VRRD +L S + + ++L
Sbjct: 772 FPYLLISKKRYAGLYWTRPDKYDKMDS---KGIETVRRDNCRLVSTVIETCLHKML---- 824
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ ++ K++ +DL V ++ L ITK L KA K
Sbjct: 825 -----IDRDVKGAEDYTKQVISDLLQNKVDMSQLVITKALAKADYAAK 867
>gi|262367838|pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna
PolymerasePCNA Monomer Mutant Complex
Length = 775
Score = 145 bits (365), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 192/380 (50%), Gaps = 44/380 (11%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP IQ++ + G L E+ LL +E++ V P NK EE
Sbjct: 327 LPXEIQLSRLVGQPLWDVSRSSTGNLVEWFLLRKAYERNEVAP------NKPSEEEY--- 377
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
+ R + +Y+GG V EP+KG ++ I+ +DF +LYPSII +N+ T+ + ++ D
Sbjct: 378 ---QRRLRESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNVSPDTLNLEGCKNYD 433
Query: 546 ITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
I C+ +P G +PS + L+E R+++K K+ + ++ D RQKA
Sbjct: 434 IAPQVGHKFCKDIP------GFIPSLLGHLLEERQKIKTKXKETQDPIEKIL-LDYRQKA 486
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLNYEVIYGDTDSLM 659
+KL ANS YG G+ +R++ + A VTA GR+ + L K L E ++V+Y DTD L
Sbjct: 487 IKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYIDTDGLY 546
Query: 660 ISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
+ + + + K + N KL LEL+ +G YK + KK+YA + G
Sbjct: 547 ATIPGGESEEIKKKALEFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVID----EEG 602
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
K+I +G+++VRRDWS++A E V+ IL +++ ++ + E ++K
Sbjct: 603 KVIT----RGLEIVRRDWSEIAKETQARVLETILKHG-----DVEEAVRIVKEVIQK--- 650
Query: 779 DLDNGFVPLTLLEITKQLTK 798
L N +P L I +Q+T+
Sbjct: 651 -LANYEIPPEKLAIYEQITR 669
>gi|71005878|ref|XP_757605.1| hypothetical protein UM01458.1 [Ustilago maydis 521]
gi|46097098|gb|EAK82331.1| hypothetical protein UM01458.1 [Ustilago maydis 521]
Length = 1057
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 204/409 (49%), Gaps = 59/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A ++T V N L L G+ + L +E +Y++P
Sbjct: 481 KLMCFINYIEMA-RVTGVPFNYL---LSRGQQIKVVSQLFRKANEDNYLVP--------- 527
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
A KG+G + Y G VLEPK G+YD+ I +DF SLYPS++ +N+C+TT+
Sbjct: 528 -------AYKGEGTEDQ-YEGATVLEPKAGYYDRPIATLDFASLYPSVMMAHNLCYTTLL 579
Query: 538 -------VRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ + QD D IT Y ++ G+LP+ ++ L+ +R++ KA +K+ +
Sbjct: 580 DKKTIDRLELKQDEDYVITPNNNYFATKKLRKGLLPTVLENLLAARKRAKADLKK---ET 636
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D D RQ ALK++ANS+YG G + ++ TA GR+++ TK+ VE
Sbjct: 637 DPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLEISMSTTAYGRQMIEQTKTYVEKH 696
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVY 696
+ EV+YGDTDS+MI V D ++G + +K + ++L+ + VY
Sbjct: 697 YTIANGYEYDAEVVYGDTDSVMIKFGVPDLARAMELGAEAAGLVSKTFVDPIKLEFEKVY 756
Query: 697 KYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L ++ KM + KG++ VRRD +L + + ++L
Sbjct: 757 FPYLLISKKRYAGLYWTRAEKYDKM----DTKGIETVRRDNCRLVQTVIETCLRKML--- 809
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ E+ K I +DL V ++ L ITK L K+ K
Sbjct: 810 ------IDRDVKGAEEYAKNIISDLLQNKVDMSQLVITKALAKSDYAAK 852
>gi|449547887|gb|EMD38854.1| hypothetical protein CERSUDRAFT_112578 [Ceriporiopsis subvermispora
B]
Length = 1085
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 207/409 (50%), Gaps = 59/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+S + L +E+ Y++P
Sbjct: 504 KLMCFINYTEMA-RVTGVPFNYL---LSRGQSIKVLSQLFRRANEEGYLIP--------- 550
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ KG+G + Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 551 -------SLKGEGSDEQ-YEGATVIEPKKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL 602
Query: 538 -------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ +++D D T ++ + G+LP+ ++ L+ +R++ KA +K+ +
Sbjct: 603 DKNTIDRMNLVKDIDYIQTPNNDFFVKSTKRKGLLPTILEDLISTRKRAKADLKK---ET 659
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN- 645
D D RQ ALK++ANS+YG G + +++ VT+ GR+++ TK VE
Sbjct: 660 DPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTSYGRQMIEQTKREVEAE 719
Query: 646 --------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVY 696
N +VIYGDTDS+M+ D V +G Q +K K ++L+ + VY
Sbjct: 720 FSSDNGHKHNAKVIYGDTDSVMVKFGPTDLAEVMALGAQAADFVTSKFIKPIKLEFEKVY 779
Query: 697 KYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L ++ KM + KG++ VRRD +L S + + ++L
Sbjct: 780 FPYLLISKKRYAGLYWTRPDKYDKM----DTKGIETVRRDNCRLVSTVIETCLHKLL--- 832
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ E+ K+I +DL V ++ L ITK L KA K
Sbjct: 833 ------IDRDVRGAEEYTKQIISDLLQNRVDMSQLVITKALAKADYAAK 875
>gi|403413674|emb|CCM00374.1| predicted protein [Fibroporia radiculosa]
Length = 1060
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/424 (30%), Positives = 208/424 (49%), Gaps = 59/424 (13%)
Query: 403 VEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHE 462
V +K L I K+MC +N +A ++T V N L L G+S + L ++
Sbjct: 464 VYCLKDAYLPQRLIDKLMCFINYTEMA-RVTGVPFNYL---LSRGQSIKVLSQLYRKAND 519
Query: 463 KSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
Y++P + KG+G + Y G V+EP KG+YD I +DF+SLY
Sbjct: 520 DGYIIP----------------SLKGEGSDEQ-YEGATVIEPMKGYYDVPIATLDFSSLY 562
Query: 523 PSIIQEYNICFTTIP-------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVES 573
PSI+ +N+C+TT+ + +++D D T ++ G+LP+ ++ L+ +
Sbjct: 563 PSIMMAHNLCYTTLVDKKVIDRLHLVKDVDYIQTPNNDFFVTSSKRKGLLPTILEDLIGA 622
Query: 574 RRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
R++ K +K+ +D D RQ ALK++ANS+YG G + P+++ VTA
Sbjct: 623 RKRAKVDLKK---ETDPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLPISSSVTAY 679
Query: 632 GREILLNTKSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN 682
GR+++ TK VE + + VIYGDTDS+M+ D +V +G Q
Sbjct: 680 GRQMIEKTKQEVEAEYCVANGHSHDAHVIYGDTDSVMVKFGPTDLPTVMALGAQAADFVT 739
Query: 683 -KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLA 740
K K ++L+ + VY LL+ KK+YA L ++ KM + KG++ VRRD +L
Sbjct: 740 AKFIKPIKLEFEKVYFPYLLISKKRYAGLYWTRPDKYDKM----DTKGIETVRRDNCRLV 795
Query: 741 SEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
S + + ++L +D ++ E+ K+I DL V ++ L ITK L KA
Sbjct: 796 STVIETCLHKML---------IDRDVKGAEEYTKQIIADLLQNKVDMSQLVITKALAKAD 846
Query: 801 EGGK 804
K
Sbjct: 847 YAAK 850
>gi|170104866|ref|XP_001883646.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641281|gb|EDR05542.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1064
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/413 (30%), Positives = 207/413 (50%), Gaps = 67/413 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A ++T V N L L G+S + L +++ YV+P
Sbjct: 483 KLMCFVNYIEMA-RVTGVPFNYL---LSRGQSIKVLSQLFRKANDEGYVVP--------- 529
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ KG+G + Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT
Sbjct: 530 -------SMKGEGSDEQ-YEGATVIEPKKGYYDVPIATLDFSSLYPSIMMAHNLCYTT-- 579
Query: 538 VRMLQDSDITTL-----CEYLPEHQVDT--------GILPSEIKKLVESRRQVKALMKQ- 583
+L + I L +Y+ D G+LP+ ++ L+ +R++ KA +K+
Sbjct: 580 --LLDKATIDRLGLVKDVDYIQTPNNDLFATTKKRKGLLPTILEDLISARKRAKADLKKE 637
Query: 584 --PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
P + L D RQ ALK++ANS+YG G + +++ VT+ GR+++ TK
Sbjct: 638 TDPFKKAVL----DGRQLALKISANSVYGFTGATIGKLPCLAISSSVTSYGRQMIEKTKQ 693
Query: 642 LVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELD 691
VE + E+IYGDTDS+M+ ND V +G + K K ++L+
Sbjct: 694 EVEAEYCIANGHTHDAEIIYGDTDSVMVRFGPNDLAKVMALGIEAADLVTAKFVKPIKLE 753
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+ VY LL+ KK+YA L +K+ + S KG++ VRRD +L S + + ++
Sbjct: 754 FEKVYYPYLLISKKRYAGLYWTKVDKYDKMDS---KGIETVRRDNCRLVSTVIETCLHKM 810
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
L +D +++ ++ K+ DL V ++ L ITK L+K GK
Sbjct: 811 L---------IDRDVRSAEDYTKQTIADLLQNKVDMSQLVITKALSKTDYAGK 854
>gi|242060584|ref|XP_002451581.1| hypothetical protein SORBIDRAFT_04g004200 [Sorghum bicolor]
gi|241931412|gb|EES04557.1| hypothetical protein SORBIDRAFT_04g004200 [Sorghum bicolor]
Length = 1101
Score = 144 bits (364), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 204/410 (49%), Gaps = 51/410 (12%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ V+P+ KG+
Sbjct: 533 VEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNI----------------KGQ 576
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRML---- 541
G + + G VLE + GFY+K I +DF SLYPSI+ YN+C+ T +P R L
Sbjct: 577 GSGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPP 636
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQK 599
+ + T E + ++ GILP +++L+ +R++ KA +K+ + D L D RQ
Sbjct: 637 ESINKTPSGEIFVKPELQKGILPEILEELLAARKRAKADLKE---AKDPLERAVLDGRQL 693
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEV 650
ALK++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N EV
Sbjct: 694 ALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEV 753
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAA 709
IYGDTDS+M+ V+ + K+G + + + K ++L+ + VY LL+ KK+YA
Sbjct: 754 IYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFTKPIKLEFEKVYFPYLLISKKRYAG 813
Query: 710 LSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
L +N + + KG++ VRRD L + +IL +D +
Sbjct: 814 L---YWTNPEKFDKMDAKGIETVRRDNCLLVKNLVTECLHKIL---------VDRDVPGA 861
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+++K +DL V L+LL ITK LTK E V + L+ R R
Sbjct: 862 VQYVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKR 911
>gi|324120716|dbj|BAJ78749.1| DNA polymerase delta catalytic subunit [Teleogryllus emma]
Length = 1089
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 198/408 (48%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL K Y++P G ++
Sbjct: 513 KLMCIINYMEMA----RVTGVPLSCLLTRGQQIKVVSQLLRTAKPKGYLMPAYSSGVQEE 568
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-I 536
+ Y G V+EPKKG+Y I +DF+SLYPSI+ +N+C+TT +
Sbjct: 569 Q-----------------YEGATVIEPKKGYYSDPITTLDFSSLYPSIMMAHNLCYTTLL 611
Query: 537 P------VRMLQDSDITTLC-EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
P + + QD T + + V G+LP ++ L+ +R++ KA +K+ +D
Sbjct: 612 PSGMKEKLSLTQDQFTKTPAGNFFVKAPVRKGLLPEILENLLGARKRAKADLKK---ETD 668
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-NL 646
Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE +
Sbjct: 669 PFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVESHF 728
Query: 647 NYE--------VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYK 697
N VIYGDTDS+M+ V + ++G + K K ++L+ + VY
Sbjct: 729 NVSNGYQNDAVVIYGDTDSVMVKFGVKTLEEAMELGREAAEFVTEKFVKPIKLEFEKVYY 788
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD S L + + ++L
Sbjct: 789 PYLLINKKRYAGLYFTRPDKYDKMDC----KGIETVRRDNSPLVANMMNTCLQKLL---- 840
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D Q E+ K++ +DL + ++ L ITK+LTK+ K
Sbjct: 841 -----IDRDPQGAMEYAKQVISDLLCNRIDISQLVITKELTKSDYAAK 883
>gi|302687116|ref|XP_003033238.1| hypothetical protein SCHCODRAFT_81939 [Schizophyllum commune H4-8]
gi|300106932|gb|EFI98335.1| hypothetical protein SCHCODRAFT_81939 [Schizophyllum commune H4-8]
Length = 1072
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 208/408 (50%), Gaps = 57/408 (13%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A ++T V N L L G+S + L + +Y++P
Sbjct: 490 KLMCFVNYIEMA-RVTGVPFNYL---LARGQSIKVLSQLFRKANSDNYIIP--------- 536
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
A KG+G + Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 537 -------ALKGEGSDEQ-YEGATVIEPKKGYYDAPIATLDFSSLYPSIMMAHNLCYTTLV 588
Query: 538 VR-------MLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
R +++D D T ++ + G+LP+ ++ L+ +R++ KA +K+ +
Sbjct: 589 DRSTIERLGLVKDVDYIQTPNNDFFVKATKRKGLLPTVLEDLISARKRAKADLKK---ET 645
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN- 645
D D RQ ALK++ANS+YG G + +++ VT+ GR+++ TK VE+
Sbjct: 646 DPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTSYGRQMIEKTKQEVESQ 705
Query: 646 --------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVY 696
+ EVIYGDTDS+M+ D +V ++G + K K ++L+ + VY
Sbjct: 706 YCIANGFKHDAEVIYGDTDSVMVKFGPADLATVMEMGAEAADFVTGKFVKPIKLEFEKVY 765
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +K + S KG++ VRRD +L S + + ++L
Sbjct: 766 FPYLLISKKRYAGLYWTKTEKYDKLDS---KGIETVRRDNCRLVSTVIETCLHKML---- 818
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ +++K ++L V ++ L ITK L KA GK
Sbjct: 819 -----IDRDVKGAEDYVKHTISELLQNKVDMSQLVITKALAKADYTGK 861
>gi|307110156|gb|EFN58392.1| DNA polymerase delta subunit [Chlorella variabilis]
Length = 1011
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 112/387 (28%), Positives = 202/387 (52%), Gaps = 47/387 (12%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + +L K+ V+P+ + G + EG
Sbjct: 441 VEMARVTGVPMSYLLSRGQSIKVFSQILRKSRTKNLVVPNMKRGGDPNEG---------- 490
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS----- 544
AY G VLEPK G+YDK + +DF SLYPSI+ +N+C+TT+ + ++
Sbjct: 491 ----VAYEGATVLEPKAGYYDKPVATLDFASLYPSIMMAHNLCYTTLVPKGHENMFPKEH 546
Query: 545 -DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 601
I+ + + + TG+LP +++L+ +R++ + M + ++D ++ ++ RQ AL
Sbjct: 547 LTISPNGDTFVKSSLATGVLPEILQELLAARKRARKDMGE---ATDPFLRAVFNGRQMAL 603
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT-KSLVENLN--------YEVIY 652
K++ANS+YG G +++ VT+ GRE+++ T + ++E N +VIY
Sbjct: 604 KVSANSVYGFTGATVGALPCLEISSSVTSFGREMIMETRRRVMEKYNRANGYTHDADVIY 663
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M+ V+D + ++G + E +K + K ++L+ + VY LL+ KK+YA L
Sbjct: 664 GDTDSVMVYFGVDDTAAAMQLGLEAAEEVSKAFIKPIKLEFEKVYNPYLLISKKRYAGLL 723
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+K I + KG++ VRRD L + +IL E++ + +
Sbjct: 724 WTKPEKWDKI---DTKGIETVRRDNCLLVRNVVTTCLEKILVERAPGEAC---------D 771
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTK 798
++K + +DL + L+LL I+K LT+
Sbjct: 772 YVKGVISDLLMNKLDLSLLVISKGLTQ 798
>gi|395331770|gb|EJF64150.1| hypothetical protein DICSQDRAFT_81194 [Dichomitus squalens LYAD-421
SS1]
Length = 1083
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 206/409 (50%), Gaps = 59/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+S + L ++ YV+P
Sbjct: 502 KLMCFINYTEMA-RVTGVPFNYL---LARGQSIKVLSQLFRKANDDGYVVP--------- 548
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
A KG+G + Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 549 -------ALKGEGSDEQ-YEGATVIEPKKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL 600
Query: 538 VRMLQD-SDITTLCEYLPEHQVDT--------GILPSEIKKLVESRRQVKALMKQPNLSS 588
+ D + +Y+ D G+LP+ ++ L+ +R++ KA +K+ +
Sbjct: 601 DKATVDRLGLVRDVDYVQTPNNDLFVKSSRRKGLLPTILEDLISARKRAKADLKK---ET 657
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D D RQ ALK++ANS+YG G + +++ VTA GR+++ TK VE
Sbjct: 658 DPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAYGRQMIEKTKQEVEAE 717
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVY 696
+ + VIYGDTDS+M+ D +V ++G++ K K ++L+ + VY
Sbjct: 718 YCIANGHDHDATVIYGDTDSVMVRFGPTDLPTVMRLGSEAADFVTGKFIKPIKLEFEKVY 777
Query: 697 KYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L ++ KM + KG++ VRRD +L S + + ++L
Sbjct: 778 FPYLLISKKRYAGLYWTRPEKYDKM----DTKGIETVRRDNCRLVSTVIETCLHKLL--- 830
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ E++K++ +DL + ++ L ITK L KA K
Sbjct: 831 ------IDRDVKAAEEYVKQVISDLLQNRIDMSQLVITKALAKADYAAK 873
>gi|307167251|gb|EFN60939.1| DNA polymerase delta catalytic subunit [Camponotus floridanus]
Length = 1092
Score = 144 bits (363), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 128/411 (31%), Positives = 198/411 (48%), Gaps = 64/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + + +++ V G +S L G+ + LL EK Y++P Q
Sbjct: 513 KLMCII----IYMEMARVTGVSISSLLTRGQQIKVVSQLLRKTREKDYLIPVHQ------ 562
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G+ E + G V+EPK+G+Y+ I +DF+SLYPSII +N+C+TT+
Sbjct: 563 -GQVVDEQ----------FEGATVIEPKRGYYNSPIATLDFSSLYPSIIMAHNLCYTTLL 611
Query: 538 VRM------LQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+Q+ +T + V GILP ++ L+ +R++ KA +KQ +D
Sbjct: 612 TLAKKRELNIQEDQVTVTPSNSLFIKSTVRKGILPEILENLLAARKKAKAELKQ---ETD 668
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK VEN
Sbjct: 669 PLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRTMIEQTKQEVENHF 728
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ VIYGDTDS+M+ V + ++G + +K K ++L+ + VY
Sbjct: 729 RIENGYKNDAVVIYGDTDSVMVKFGVESIEDAMELGRKAADYVTSKFIKPIKLEFEKVYF 788
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE-- 754
LL+ KK+YA L +K KM C KG++ VRRD L + + +L E
Sbjct: 789 PYLLINKKRYAGLYFTKPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQILLIERN 844
Query: 755 -QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+ DY+ K+I +DL + L+ L ITK+LTK K
Sbjct: 845 PHAAVDYA------------KQIISDLLCNRIDLSQLVITKELTKTDYAAK 883
>gi|242070347|ref|XP_002450450.1| hypothetical protein SORBIDRAFT_05g005680 [Sorghum bicolor]
gi|241936293|gb|EES09438.1| hypothetical protein SORBIDRAFT_05g005680 [Sorghum bicolor]
Length = 1099
Score = 144 bits (363), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 203/410 (49%), Gaps = 51/410 (12%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ V+P+ KG+
Sbjct: 531 VEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNI----------------KGQ 574
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRML---- 541
G + + G VLE + GFY+K I +DF SLYPSI+ YN+C+ T +P R L
Sbjct: 575 GSGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPP 634
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQK 599
+ + T E + ++ GILP +++L+ +R++ KA +K+ + D L D RQ
Sbjct: 635 ESINKTPSGEIFVKPELQKGILPEILEELLAARKRAKADLKE---AKDPLERAVLDGRQL 691
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEV 650
ALK++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N EV
Sbjct: 692 ALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTVGGYEHNAEV 751
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAA 709
IYGDTDS+M+ V+ K+G + + + K ++L+ + VY LL+ KK+YA
Sbjct: 752 IYGDTDSVMVQFGVSTVQDAMKLGREAADYISGTFTKPIKLEFEKVYFPYLLISKKRYAG 811
Query: 710 LSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
L +N + + KG++ VRRD L + +IL +D +
Sbjct: 812 L---YWTNPEKFDKMDAKGIETVRRDNCLLVKNLVTECLHKIL---------VDRDVPGA 859
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+++K +DL V L+LL ITK LTK E V + L+ R R
Sbjct: 860 VQYVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKR 909
>gi|403221257|dbj|BAM39390.1| DNA polymerase delta catalytic subunit [Theileria orientalis strain
Shintoku]
Length = 1072
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 95/274 (34%), Positives = 152/274 (55%), Gaps = 27/274 (9%)
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDS---D 545
G + Y G VL+P+KG++ I ++DF SLYPSI+ YN+C++T +P + + D
Sbjct: 548 GSNENNYEGATVLDPQKGYHTNPIAVLDFQSLYPSIMIAYNLCYSTLVPQNKILNHPEED 607
Query: 546 ITTLCEYLPEHQVDT----GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQK 599
+T + Y+ V GILP ++ L+E+RR+ K +M D +++ YD RQ
Sbjct: 608 VTRIPGYIDLCFVKATKRKGILPIIVENLIEARRKAKKMMAS---CQDPMLKKVYDGRQL 664
Query: 600 ALKLTANSMYGCLGFPNSRFF-AQPLAALVTAKGREILLNTKSLVENL---------NYE 649
ALK+T NS+YG G + F +A +T+ GR I+LNTK+++E+ + +
Sbjct: 665 ALKVTTNSVYGYTGAASGGFLPCVDVATAITSFGRNIILNTKNIIEDHFTVKNGYKNDAK 724
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKL-YKQLELDIDGVYKYMLLLKKKKYA 708
V+YGDTDS+MI+ D +GN+ S+ + K + L + VY+ +LLL KK+YA
Sbjct: 725 VVYGDTDSVMINFGTEDIQEAIDLGNEAASKITSVSVKPITLLFEKVYRPLLLLNKKRYA 784
Query: 709 ALSISKLSNGKMICSQEIKGVDVVRRDWSQLASE 742
L +N K + KG++ VRRD+ L +
Sbjct: 785 GL---YYNNSKTYEKIDCKGIETVRRDFCMLVQQ 815
>gi|303390605|ref|XP_003073533.1| DNA polymerase catalytic subunit delta [Encephalitozoon
intestinalis ATCC 50506]
gi|303302680|gb|ADM12173.1| DNA polymerase catalytic subunit delta [Encephalitozoon
intestinalis ATCC 50506]
Length = 959
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 120/351 (34%), Positives = 181/351 (51%), Gaps = 44/351 (12%)
Query: 472 YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNI 531
Y KEG E + + KK Y GG V+EPKKGFY K I +MDF SLYPSI+ +N+
Sbjct: 427 YRTASKEGFVVPETDPFESGKK--YEGGFVIEPKKGFYGKPISVMDFTSLYPSIMISHNL 484
Query: 532 CFTTIPV----RMLQDSDITT---LCEYLPEHQVDTGILPSEIKKLVESR---RQVKALM 581
C+TT+ R+L T C PE + G+LP + L++SR ++
Sbjct: 485 CYTTLLTKDQYRILGGIRTPTDNYFCS--PERK--KGLLPRILVDLLDSRKKIKEELKKE 540
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
K P + + L + +Q A+KL ANS+YG G + ++ VT GRE+++ TK
Sbjct: 541 KDPAVKACL----NGKQLAVKLCANSLYGFTGASKGKLPCFEISQSVTGFGREMIMLTKK 596
Query: 642 LVENLNYE----------VIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLEL 690
L+E N+ VIYGDTDS+MI+ + D VF++ +I +K K + L
Sbjct: 597 LIEE-NFSKKNGYTHDSVVIYGDTDSVMINFDEEDIKKVFEMSKEISEFVTSKFMKPVSL 655
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
+ + VY LL+ KK+YA L S + I + KG++ VRRD L E + V+
Sbjct: 656 EFEKVYYPYLLINKKRYAGLLYSNPNTASKI---DTKGIEAVRRDNCGLVKETVETVLEM 712
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
IL E++ ++ + ++ + DL G + L+LL I+K LTK+ E
Sbjct: 713 ILHEKN---------VEKAKQFVRDVVRDLYLGRIDLSLLVISKSLTKSGE 754
>gi|345483424|ref|XP_001602680.2| PREDICTED: DNA polymerase delta catalytic subunit-like [Nasonia
vitripennis]
Length = 1090
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 198/403 (49%), Gaps = 58/403 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + + +++ V G LS L G+ + LL E+ Y++P
Sbjct: 511 KLMCII----IYMEMARVTGVSLSSLLTRGQQIKVVSQLLRKTIERGYLIP--------- 557
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
++G+G + + G V+EPK+G+Y+ I +DF+SLYPSII +NIC+TT+
Sbjct: 558 -------VHQGQGSDEQ-FEGATVIEPKRGYYNDPIATLDFSSLYPSIIMAHNICYTTLL 609
Query: 538 VRMLQ--------DSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
Q D T + + V GILP ++ L+ +R+ KA +K+ +D
Sbjct: 610 SPAAQKAYEVPENDVTKTPVNSNFVKSNVRKGILPEILESLLSARKVAKAELKK---ETD 666
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
L Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 667 PLKQKVLDGRQYALKVSANSVYGFTGAQQGKLPCLEISGSVTAYGRTMIDKTKHEVEQQY 726
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ EVIYGDTDS+M+ V + K+G + +K K ++L+ + VY
Sbjct: 727 RKENGYEHDAEVIYGDTDSVMVKFGVKSIEDAMKLGKEAAEYVTSKFIKPIKLEFEKVYF 786
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L
Sbjct: 787 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLL---- 838
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+D ++ ++ K++ +DL + ++ L ITK+LTK
Sbjct: 839 -----IDRNPEDAIDYAKQVISDLLCNRIDISQLVITKELTKT 876
>gi|219121567|ref|XP_002181135.1| DNA polymerase delta [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407121|gb|EEC47058.1| DNA polymerase delta [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1087
Score = 144 bits (362), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 208/408 (50%), Gaps = 48/408 (11%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
++M +L+VL I++ V G +S + G+ + ++L + ++P +
Sbjct: 494 RLMDKLSVLVNYIEMARVTGVPMSFLISRGQQIKVFSMILRKCRHEKLLVPTLR------ 547
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
++G AN G Y G VL+P K +Y+ I +DF SLYPSI+Q YN+C++T+
Sbjct: 548 ---KSGNANADVG-----YEGATVLDPIKNYYEVPIATLDFASLYPSIMQAYNLCYSTLV 599
Query: 537 -PVRMLQ-DSDITTLCE---YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL 591
P + + D DI E V GILP+ +++L+ +R++ K MK D
Sbjct: 600 NPADVGKLDPDIYRKSENGNVFVHSSVKKGILPTILEELLSARKRAKKDMKNAPTDFDRA 659
Query: 592 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE------- 644
+Q + RQ ALK++ANS+YG G + P+A+ VT+ GR++L TK+ VE
Sbjct: 660 VQ-NGRQLALKVSANSVYGFTGATVGQLPCLPIASSVTSYGRQLLEKTKTFVEEKYTKSN 718
Query: 645 --NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLL 701
+ + +V+YGDTDS+M+ F + + + ++++ + L+ + VY LL
Sbjct: 719 GYDHDAQVVYGDTDSVMVKFGPATVAETFPLAIEAAEKASEIFPSPILLEFEKVYFPYLL 778
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
+ KK+YA L +++ + + KG++VVRRD QL E + +++IL
Sbjct: 779 MNKKRYAGLMWTEIEKYDKL---DTKGLEVVRRDNCQLVREVIQTSLNKIL--------- 826
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE-----GGK 804
+D +Q E++K +DL + ++ L ITK L K E GGK
Sbjct: 827 IDQNVQGAIEYVKSQISDLLQNKMDISRLVITKSLNKGAEYALGLGGK 874
>gi|324120726|dbj|BAJ78754.1| DNA polymerase delta catalytic subunit [Tenodera aridifolia]
Length = 1030
Score = 144 bits (362), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 126/408 (30%), Positives = 193/408 (47%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L G+ + LL EK YV+P
Sbjct: 453 KLMCIINYMEMA----RVTGVSLPSLLTRGQQIKVVSQLLRKAREKGYVIP--------- 499
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
G G ++ Y G V+EPKKG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 500 --------AYGGGVQEEQYEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLL 551
Query: 537 ---P---VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
P + + D I T Y V G+LP ++ L+ +R++ KA +K D
Sbjct: 552 QSGPREKLGLTPDQYIKTPASNYFVTKSVRKGLLPEILENLLAARKKAKADLKN---EKD 608
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 609 PFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQHY 668
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYK 697
+ EV+YGDTDS+M+ V + K+G + + K ++L+ + VY
Sbjct: 669 NRSNGYENDAEVVYGDTDSVMVKFGVKTVEEAMKLGREAADYVSAKFTPPIKLEFEKVYF 728
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD S L + + ++L
Sbjct: 729 PYLLISKKRYAGLYFTRPDKYDKMDC----KGIETVRRDNSPLVANMMNTCLQKLL---- 780
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D E+ K++ DL + ++ L ITK+LTK+ K
Sbjct: 781 -----IDRDPNGAVEYAKQVIADLLCNRIDISQLVITKELTKSDYAAK 823
>gi|302803951|ref|XP_002983728.1| hypothetical protein SELMODRAFT_180322 [Selaginella moellendorffii]
gi|300148565|gb|EFJ15224.1| hypothetical protein SELMODRAFT_180322 [Selaginella moellendorffii]
Length = 984
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 212/412 (51%), Gaps = 55/412 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I++ V G +S L G+S + +L ++++V+P+ KG+
Sbjct: 416 IEMARVTGVPISFLLSRGQSIKVLSQILRKCRQRNFVVPNI----------------KGQ 459
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM--------- 540
G + + G VLE + GFY+K I +DF SLYPSI+ YN+C+ T+ VR
Sbjct: 460 GAGQETFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTL-VRTEDQARLNIA 518
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQ 598
++ + T E + ++ GILP +++L+ +R++ +A +K+ ++D L D RQ
Sbjct: 519 PENVNKTPSGEMFVKTNMEKGILPEILEELLAARKRARADLKE---ATDSLEKAVLDGRQ 575
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYE 649
ALK++ANS+YG G + +++ VT+ GR+++ +TK+LVE + N E
Sbjct: 576 LALKVSANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKTLVEGRFNTSNKYDNNAE 635
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYA 708
VIYGDTDS+M+ V+ + +G + ++ + K ++L+ + VY LL+ KK+YA
Sbjct: 636 VIYGDTDSVMVQFGVSTVEDAMNLGREAADYISETFTKPIKLEFEKVYFPYLLISKKRYA 695
Query: 709 ALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
L +K + KM + KG++ VRRD L K V++Q L + +D +
Sbjct: 696 GLLWTKPAKYDKM----DTKGIETVRRDNCLLV----KNVVTQSLHK-----ILVDRDVP 742
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+ +K + +DL + L+LL ITK LTK + V + L+ R R
Sbjct: 743 GAVDFVKGMISDLLMNRMDLSLLVITKGLTKTGDDYAVKAAHVELAERMRKR 794
>gi|302801963|ref|XP_002982737.1| hypothetical protein SELMODRAFT_155333 [Selaginella moellendorffii]
gi|300149327|gb|EFJ15982.1| hypothetical protein SELMODRAFT_155333 [Selaginella moellendorffii]
Length = 980
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 212/412 (51%), Gaps = 55/412 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I++ V G +S L G+S + +L ++++V+P+ KG+
Sbjct: 412 IEMARVTGVPISFLLSRGQSIKVLSQILRKCRQRNFVVPNI----------------KGQ 455
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM--------- 540
G + + G VLE + GFY+K I +DF SLYPSI+ YN+C+ T+ VR
Sbjct: 456 GAGQETFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTL-VRTEDQARLNIA 514
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQ 598
++ + T E + ++ GILP +++L+ +R++ +A +K+ ++D L D RQ
Sbjct: 515 PENVNKTPSGETFVKTNMEKGILPEILEELLAARKRARADLKE---ATDSLEKAVLDGRQ 571
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYE 649
ALK++ANS+YG G + +++ VT+ GR+++ +TK+LVE + N E
Sbjct: 572 LALKVSANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKTLVEGRFNTSNKYDNNAE 631
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYA 708
VIYGDTDS+M+ V+ + +G + + + K ++L+ + VY LL+ KK+YA
Sbjct: 632 VIYGDTDSVMVQFGVSTVEDAMNLGREAADYISGTFTKPIKLEFEKVYFPYLLISKKRYA 691
Query: 709 ALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
L +K + KM + KG++ VRRD L K V++Q L + +D +
Sbjct: 692 GLLWTKPAKYDKM----DTKGIETVRRDNCLLV----KNVVTQSLHK-----ILVDRDVP 738
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+++K + +DL + L+LL ITK LTK + V + L+ R R
Sbjct: 739 GAVDYVKGMISDLLMNRMDLSLLVITKGLTKTGDDYAVKAAHVELAERMRKR 790
>gi|358057090|dbj|GAA96997.1| hypothetical protein E5Q_03671 [Mixia osmundae IAM 14324]
Length = 769
Score = 143 bits (360), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 114/350 (32%), Positives = 182/350 (52%), Gaps = 45/350 (12%)
Query: 476 KKEGEE--TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICF 533
+K GEE + KG+G + Y G V+EP +G+YD I +DF+SLYPSI+ +N+C+
Sbjct: 226 RKAGEEGYVIPSLKGEGSDEQ-YEGATVIEPTRGYYDVPIATLDFSSLYPSIMMAHNLCY 284
Query: 534 TTIP-------VRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ- 583
TT+ + L D D +T ++ + G+LP+ ++ L+ +R++ K MK
Sbjct: 285 TTLMDKKTIDRLGFLIDKDYIMTPNGDFFAKSHKRKGLLPTVLEDLLSARKRAKNDMKNE 344
Query: 584 --PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL----- 636
P + L D RQ ALK++ANS+YG G + P++ TA GRE++
Sbjct: 345 TDPFKRAVL----DGRQLALKISANSVYGFTGATVGKLPCLPISTSTTAYGREMIERTKQ 400
Query: 637 -----LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLEL 690
NTK+ EN + EVIYGDTDS+M+ D K+G + + K + ++L
Sbjct: 401 EVQDKYNTKNGYEN-DAEVIYGDTDSVMVRFGTKDLAETMKLGAEAAAYVTEKFVRPIKL 459
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+ + VY LL+ KK+YA L ++ KM + KG++ VRRD QL S + ++
Sbjct: 460 EFEKVYYPYLLISKKRYAGLYWTRPDRYDKM----DTKGIETVRRDNCQLVSTVIETCLN 515
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
++L E+ L E++K++ +DL + L+ L ITK L K
Sbjct: 516 KMLIERD---------LSGAEEYVKQVISDLLQNKIDLSQLVITKALAKT 556
>gi|449681697|ref|XP_004209898.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Hydra
magnipapillata]
Length = 1082
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 201/403 (49%), Gaps = 57/403 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL E ++LP + +
Sbjct: 503 KLMCVINYMEMA----RVTGVPLSYLLTRGQQVKVVSQLLRKSKEHDFILP----AQKIE 554
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G+E Y G V++P KG+Y K I +DF SLYPSI+ +N+C+TT+
Sbjct: 555 AGDE--------------YEGATVIDPIKGYYRKPIATLDFASLYPSIMMAHNLCYTTLL 600
Query: 538 V-----RMLQDSDITTLC-EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL 591
RM D I T C Y + V G+LP ++ L+ +R++ K+ +K +D+
Sbjct: 601 SKCDLERMNPDEYIVTPCNHYFVKKSVRKGLLPEILENLLSARKKAKSDLKG---ETDIF 657
Query: 592 MQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---- 645
D RQ ALK++ANS+YG G + +++ VTA GR+++ TK LVE+
Sbjct: 658 KAKVLDGRQLALKISANSVYGFTGAQVGKLPCIEISSSVTAFGRQMIERTKQLVEDKYNI 717
Query: 646 -----LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYM 699
+ +VIYGDTDS+M+ ++ ++G + + N+ ++L+ + VY
Sbjct: 718 KNGYKYDSKVIYGDTDSVMVQFGPDNVPDSMELGREAAAYVSNEFIDPIKLEFEKVYYPY 777
Query: 700 LLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
LL+ KK+YA L SK KM C KG++ VRRD S L ++ + ++L
Sbjct: 778 LLISKKRYAGLYYSKPDTFDKMDC----KGIETVRRDNSPLVAKLINTCLQKLL------ 827
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+D + + K++ +DL + ++ L ITK+LTK E
Sbjct: 828 ---IDRDPEGAVVYTKQVISDLLCNRIDISELVITKELTKTEE 867
>gi|428673126|gb|EKX74039.1| DNA polymerase delta catalytic subunit, putative [Babesia equi]
Length = 1030
Score = 142 bits (359), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 158/293 (53%), Gaps = 50/293 (17%)
Query: 481 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
TG N +A Y GG VL+P++G++ + I ++DF SLYPSI+ +N+C++T +
Sbjct: 536 STGSRN---ASNEAGYEGGTVLDPQRGYHKQPIAVLDFQSLYPSIMIAHNLCYST----L 588
Query: 541 LQDSDITTLCEYLPEH---------------QVDTGILPSEIKKLVESRRQVKALMKQPN 585
+ S++ +Y PEH V TG+LP + L+E+R++ K LM
Sbjct: 589 IPTSEVD---KYPPEHVTRVPGHEGLCFIKSSVRTGVLPIIVSNLIEARKRAKKLMAS-- 643
Query: 586 LSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFF-AQPLAALVTAKGREILLNTKSL 642
+D +++ YD RQ ALK+T NS+YG G + F +A +T+ GR ++LNTK
Sbjct: 644 -CTDPMLKSVYDGRQLALKITTNSVYGYTGAASGGFLPCVEVATAITSFGRSMILNTKQS 702
Query: 643 VEN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIG----NQIKSECNKLYKQLE 689
+E+ N +V+YGDTDS+MI+ + + ++G +I SE K +
Sbjct: 703 IESHFTAENGYIANAKVVYGDTDSVMINFGTDKIEKAIELGIEAAAKITSEAT---KPIT 759
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASE 742
L + VY+ +LLL KK+YA L S + + I + KG++ VRRD+ L +
Sbjct: 760 LVFEKVYRPLLLLNKKRYAGLFYSNATTYEKI---DCKGIETVRRDFCPLVQQ 809
>gi|327311462|ref|YP_004338359.1| DNA polymerase II [Thermoproteus uzoniensis 768-20]
gi|326947941|gb|AEA13047.1| DNA polymerase II [Thermoproteus uzoniensis 768-20]
Length = 785
Score = 142 bits (359), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 189/375 (50%), Gaps = 50/375 (13%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP IQ+++V G L + R E+LL+ + V P N++E
Sbjct: 349 LLPYLIQLSSVSGVPLDQVAAASVGARVEWLLMRYAYRMGEVAP------NREE------ 396
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ-- 542
R Y G +VLEP+ G Y +L DF S+YPSI+ +YN+ P L+
Sbjct: 397 ------RPYETYKGAIVLEPRPGIYQDVAVL-DFTSMYPSIMMKYNLS----PDTYLEPG 445
Query: 543 DSDITTLCEYLPE--HQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 597
+ D PE H+ TG +P + LV+ R++V++ M + +S D R
Sbjct: 446 EPDPPEGVYRAPEVGHRFRKSPTGFIPQVLASLVKLRKEVRSAMSGLDPNSVEYKLLDER 505
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 657
Q+ALK+ AN+MYG +G+ +R++ + +A VTA R ILL+ + +N VIYGDTDS
Sbjct: 506 QRALKIMANAMYGYMGWLGARWYKREVAESVTAFARNILLDVINFAKNTGINVIYGDTDS 565
Query: 658 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLS 716
L + + D D +I N + + N +E+ ++ +YK +L + KK+YA L L
Sbjct: 566 LFVKYS-KDID---RIINYVNDKFN-----IEIKLEKIYKKLLFTESKKRYAGL----LD 612
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY--SLDDRLQNIHEHMK 774
+G++ +I G +VVR DW +LA E VI L Q+ T+ + +++I ++K
Sbjct: 613 DGRI----DIVGFEVVRGDWCELAKEVQLKVIEYTLKSQNLTEAKDKIVSYVKSIINNIK 668
Query: 775 KIRTDLDNGFVPLTL 789
DLD+ + TL
Sbjct: 669 TYNIDLDDLIIWKTL 683
>gi|213406475|ref|XP_002174009.1| DNA polymerase delta catalytic subunit [Schizosaccharomyces
japonicus yFS275]
gi|212002056|gb|EEB07716.1| DNA polymerase delta catalytic subunit [Schizosaccharomyces
japonicus yFS275]
Length = 1067
Score = 142 bits (359), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 170/331 (51%), Gaps = 38/331 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSD--I 546
Y G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ + M QD D I
Sbjct: 547 YEGATVIEPVKGYYDTPIATLDFSSLYPSIMMAHNLCYTTLTDPETMSRLNMKQDEDYII 606
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKALKL 603
T +Y + G+LP + L+ +R++ KA +K+ P + L D RQ ALK+
Sbjct: 607 TPNGDYFVRSNIRKGLLPLIFEDLLGARKRAKADLKKETDPFKKAVL----DGRQLALKV 662
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIYGD 654
+ANS+YG G N R +++ VT+ GR+++ TKS+VE + +VIYGD
Sbjct: 663 SANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKSVVEQTYTIKNGYSHDAKVIYGD 722
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D V K+G + ++ ++L+ + VY LL+ KK+YA L +
Sbjct: 723 TDSVMVKFGKKDLTEVMKLGQEAADFVSDQFLNPIKLEFEKVYFPYLLISKKRYAGLFWT 782
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ + S KG++ VRRD L S + ++L +D ++
Sbjct: 783 RPEKYDKLDS---KGIETVRRDNCPLVSYVIDTALRKML---------IDQDVEGAQSFT 830
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
KKI +DL + ++ L ITK LTK K
Sbjct: 831 KKIISDLLQNKIDMSQLVITKALTKTDYAAK 861
>gi|225431691|ref|XP_002264385.1| PREDICTED: DNA polymerase delta catalytic subunit [Vitis vinifera]
gi|296088521|emb|CBI37512.3| unnamed protein product [Vitis vinifera]
Length = 1089
Score = 142 bits (359), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 201/410 (49%), Gaps = 51/410 (12%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ VLP+ K+ G E G
Sbjct: 521 VEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVLPNV-----KQAGSEQG------ 569
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----VRML---- 541
Y G VLE GFY+K I +DF SLYPSI+ YN+C+ T+ VR L
Sbjct: 570 -----TYEGATVLEANAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPP 624
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQK 599
+ + T E + + GILP +++L+ +R++ KA +K+ + D L D RQ
Sbjct: 625 ECVNKTPSGEIFVKSSLQKGILPEILEELLAARKRAKADLKE---AKDPLEKAVLDGRQL 681
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEV 650
ALK++ANS+YG G + +++ VT+ GR+++ +TK LVE N EV
Sbjct: 682 ALKISANSVYGFTGATVGQLPCIEISSSVTSYGRQMIEHTKKLVEEKFTTLGGYEHNAEV 741
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAA 709
IYGDTDS+M+ V+ ++ +G + + + K ++L+ + VY LL+ KK+YA
Sbjct: 742 IYGDTDSVMVLFGVSTVEAAMNLGREAAEYISGTFMKPIKLEFEKVYYPYLLISKKRYAG 801
Query: 710 LSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
L +N + KG++ VRRD L K + +IL +D +
Sbjct: 802 L---LWTNPDKFDKMDTKGIETVRRDNCLLVKNLVKECLHKIL---------IDRDIPGA 849
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+++K DL + L+LL ITK LTK + +V + L+ R R
Sbjct: 850 VQYVKNTIADLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKR 899
>gi|12275273|emb|CAC22334.1| DNA polymerase [Leishmania guyanensis]
Length = 287
Score = 142 bits (358), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 110/173 (63%), Gaps = 13/173 (7%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ K
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFKR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 174 GRDDDEED---GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 230
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMK 582
+ D+ +C L + +LP IK LV+SRR+VK LMK
Sbjct: 231 ENRSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMK 283
>gi|218185393|gb|EEC67820.1| hypothetical protein OsI_35398 [Oryza sativa Indica Group]
Length = 1087
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 201/408 (49%), Gaps = 47/408 (11%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ V+P+ KG+
Sbjct: 519 VEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNI----------------KGQ 562
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRML---- 541
+ + G VLE + GFY+K I +DF SLYPSI+ YN+C+ T +P R L
Sbjct: 563 ASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPP 622
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 601
+ + T E + V GILP +++L+ +R++ KA +K+ + + D RQ AL
Sbjct: 623 ESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAV-LDGRQLAL 681
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIY 652
K++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N EVIY
Sbjct: 682 KISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIY 741
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M+ V+ + K+G + + + K ++L+ + +Y LL+ KK+YA L
Sbjct: 742 GDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGL- 800
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+N + + KG++ VRRD L + +IL +D + +
Sbjct: 801 --YWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKIL---------VDRDVPGAVQ 849
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
++K +DL V L+LL ITK LTK E V + L+ R R
Sbjct: 850 YVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKR 897
>gi|449451191|ref|XP_004143345.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Cucumis
sativus]
Length = 1086
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/416 (29%), Positives = 199/416 (47%), Gaps = 63/416 (15%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ V+P+ ++
Sbjct: 518 VEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKHA---------------- 561
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 549
G + Y G VLE + GFY+K I +DF SLYPSI+ YN+C+ T ++ D L
Sbjct: 562 GSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCT----LVTPEDACKL 617
Query: 550 CEYLPEH-------------QVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQ 593
PEH + GILP +++L+ +R++ KA +K+ P + L
Sbjct: 618 -NLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVL--- 673
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-------- 645
D RQ ALK++ANS+YG G + +++ VT+ GR+++ +TK LVE+
Sbjct: 674 -DGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGY 732
Query: 646 -LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLK 703
N EVIYGDTDS+M+ V ++ +G + + + K ++L+ + VY LL+
Sbjct: 733 KHNAEVIYGDTDSVMVQFGVPSVEAAMVLGREAADYISGTFIKPIKLEFEKVYYPYLLIS 792
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
KK+YA L +N + KG++ VRRD L + +IL +D
Sbjct: 793 KKRYAGLF---WTNPNKFDKMDTKGIETVRRDNCLLVKNLVNECLHKIL---------ID 840
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+ +++K +DL V L+LL ITK LTK + +V + L+ R R
Sbjct: 841 RDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKR 896
>gi|156552223|ref|XP_001606357.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Nasonia
vitripennis]
Length = 1086
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 126/403 (31%), Positives = 200/403 (49%), Gaps = 58/403 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + + +++ V G LS L G+ + LL E+ Y++P
Sbjct: 507 KLMCII----IYMEMARVTGVSLSSLLTRGQQIKVVSQLLRKTIERGYLIP--------- 553
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
+ G+G + Y G V+EP +G+Y+ I +DF+SLYPSII +NIC+TT+
Sbjct: 554 -------VHHGQGSDEQ-YEGATVIEPLRGYYNDPIATLDFSSLYPSIIMAHNICYTTLL 605
Query: 537 -PVRM----LQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
P L + DI T + V GILP +++L+ +R+ KA +K+ +D
Sbjct: 606 SPSAQNHYNLSNDDITRTPANSNFVKGSVRKGILPEILEQLLSARKAAKADLKK---ETD 662
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE--- 644
L Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 663 PLKQKVLDGRQYALKVSANSVYGFTGAQQGKLPCLEISGSVTAYGRTMIEKTKQEVETHY 722
Query: 645 ------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ + VIYGDTDS+M+ V + K+G + +K K ++L+ + VY
Sbjct: 723 RKENGYDHDAVVIYGDTDSVMVKFGVKKIEDAMKLGKEAAEYVTSKFIKPIKLEFEKVYF 782
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +K KM C KG++ VRRD L + + ++L
Sbjct: 783 PYLLINKKRYAGLYFTKPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLL---- 834
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
D + DD + ++ K+I +DL + ++ L +TK+LTK
Sbjct: 835 -IDRNPDDAM----DYAKQIISDLLCNRIDISQLVVTKELTKT 872
>gi|351727343|ref|NP_001238693.1| DNA polymerase delta catalytic subunit [Glycine max]
gi|3913525|sp|O48901.1|DPOD1_SOYBN RecName: Full=DNA polymerase delta catalytic subunit
gi|2895198|gb|AAC18443.1| DNA polymerase delta [Glycine max]
Length = 1088
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 205/411 (49%), Gaps = 53/411 (12%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ V+P+ K+ G E G
Sbjct: 494 VEMARVTGVPISFLLSRGQSIKVLSQLLRRARQKNLVIPNA-----KQAGSEQG------ 542
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----RML---- 541
+ G VLE + GFY+K I +DF SLYPSI+ YN+C+ T+ + R L
Sbjct: 543 -----TFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVIPEDARKLNIPP 597
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQK 599
+ + T E + + GILP +++L+ +R++ KA +K+ + D L D RQ
Sbjct: 598 ESVNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKE---AKDPLEKAVLDGRQL 654
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEV 650
ALK++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N EV
Sbjct: 655 ALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEV 714
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAA 709
IYGDTDS+M+ V+ + +G + + + K ++L+ + VY LL+ KK+YA
Sbjct: 715 IYGDTDSVMVQFGVSAVEEAMNLGREAAEHISGTFTKPIKLEFEKVYYPYLLISKKRYAG 774
Query: 710 LSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 768
L +K N KM + KG++ VRRD L + +IL +D +
Sbjct: 775 LFWTKPDNFDKM----DTKGIETVRRDNCLLVKNLVNDCLHKIL---------IDRDIPG 821
Query: 769 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+++K +DL + L+LL ITK LTK + +V + L+ R R
Sbjct: 822 AVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKR 872
>gi|169849845|ref|XP_001831621.1| delta DNA polymerase [Coprinopsis cinerea okayama7#130]
gi|116507259|gb|EAU90154.1| delta DNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1081
Score = 142 bits (357), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 204/408 (50%), Gaps = 56/408 (13%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+S + L + + Y++P
Sbjct: 500 KLMCFVNYAEMA-RVTGVPFNFL---LARGQSIKVLSQLYRKANSEGYLIP--------- 546
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ KG G + Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 547 -------SMKGGGDGEDQYEGATVIEPKKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL 599
Query: 538 -------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ +++D D T +Y G+LP+ ++ L+ +R++ KA +K+ +
Sbjct: 600 NKATIDRLSLVKDVDYVQTPNNDYFATPVRRKGLLPTILEDLISARKRAKADLKK---ET 656
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN- 645
D D RQ ALK++ANS+YG G + +++ VTA GR+++ TK VE
Sbjct: 657 DPFKKAVLDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAYGRQMIERTKQEVEAE 716
Query: 646 --------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVY 696
+ EVIYGDTDS+M+ D V +G + + + + ++L+ + VY
Sbjct: 717 YTIANGHEHDAEVIYGDTDSVMVRFGPTDLAKVMALGAEAADLVTQHFARPIKLEFEKVY 776
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ + S KG++ VRRD +L S + + ++L
Sbjct: 777 YPYLLISKKRYAGLYWTRADKWDKMDS---KGIETVRRDNCRLVSTVIETCLHKML---- 829
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ ++ K+I +DL + ++ L ITK L+K GK
Sbjct: 830 -----IDRDVKAAEDYTKRIISDLLQNKIDMSQLVITKALSKEKYAGK 872
>gi|222615647|gb|EEE51779.1| hypothetical protein OsJ_33228 [Oryza sativa Japonica Group]
Length = 1100
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 201/408 (49%), Gaps = 47/408 (11%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ V+P+ KG+
Sbjct: 532 VEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNI----------------KGQ 575
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRML---- 541
+ + G VLE + GFY+K I +DF SLYPSI+ YN+C+ T +P R L
Sbjct: 576 ASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPP 635
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 601
+ + T E + V GILP +++L+ +R++ KA +K+ + + D RQ AL
Sbjct: 636 ESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAV-LDGRQLAL 694
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIY 652
K++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N EVIY
Sbjct: 695 KISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIY 754
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M+ V+ + K+G + + + K ++L+ + +Y LL+ KK+YA L
Sbjct: 755 GDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGL- 813
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+N + + KG++ VRRD L + +IL +D + +
Sbjct: 814 --YWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKIL---------VDRDVPGAVQ 862
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
++K +DL V L+LL ITK LTK E V + L+ R R
Sbjct: 863 YVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKR 910
>gi|357157316|ref|XP_003577757.1| PREDICTED: DNA polymerase delta catalytic subunit-like
[Brachypodium distachyon]
Length = 1106
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 203/408 (49%), Gaps = 47/408 (11%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +++ V+P+ KG+
Sbjct: 538 VEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQRNLVIPNI----------------KGQ 581
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDI-- 546
G + + G VLE + GFY+K I +DF SLYPSI+ +N+C+ T +P ++ ++
Sbjct: 582 GSGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAHNLCYCTLVPPEDVRKLNLPP 641
Query: 547 -----TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 601
T E + ++ GILP +++L+ +R++ KA +K+ + + D RQ AL
Sbjct: 642 ESLYKTPSGEIFVKPELQKGILPEILEELLTARKRAKADLKEAKDPFERAV-LDGRQLAL 700
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIY 652
K++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N EVIY
Sbjct: 701 KISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIY 760
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M+ V+ + K+G + + + K ++L+ + VY LL+ KK+YA L
Sbjct: 761 GDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKVYFPYLLISKKRYAGL- 819
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+N + + KG++ VRRD L + +IL +D + +
Sbjct: 820 --YWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKIL---------VDRDVPGAVQ 868
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
++K +DL V L+LL ITK LTK E V + L+ R R
Sbjct: 869 YVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKR 916
>gi|115484523|ref|NP_001067405.1| Os11g0186400 [Oryza sativa Japonica Group]
gi|13124219|sp|Q9LRE6.1|DPOD1_ORYSJ RecName: Full=DNA polymerase delta catalytic subunit
gi|9188570|dbj|BAA99573.1| OsPol delta large subunit [Oryza sativa Japonica Group]
gi|62734232|gb|AAX96341.1| dna polymerase delta catalytic subunit (ec 2.7.7.7) [Oryza sativa
Japonica Group]
gi|77549018|gb|ABA91815.1| DNA polymerase delta catalytic subunit, putative, expressed [Oryza
sativa Japonica Group]
gi|113644627|dbj|BAF27768.1| Os11g0186400 [Oryza sativa Japonica Group]
Length = 1105
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 201/408 (49%), Gaps = 47/408 (11%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ V+P+ KG+
Sbjct: 537 VEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNI----------------KGQ 580
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRML---- 541
+ + G VLE + GFY+K I +DF SLYPSI+ YN+C+ T +P R L
Sbjct: 581 ASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPP 640
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 601
+ + T E + V GILP +++L+ +R++ KA +K+ + + D RQ AL
Sbjct: 641 ESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAV-LDGRQLAL 699
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIY 652
K++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N EVIY
Sbjct: 700 KISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIY 759
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M+ V+ + K+G + + + K ++L+ + +Y LL+ KK+YA L
Sbjct: 760 GDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGL- 818
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+N + + KG++ VRRD L + +IL +D + +
Sbjct: 819 --YWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKIL---------VDRDVPGAVQ 867
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
++K +DL V L+LL ITK LTK E V + L+ R R
Sbjct: 868 YVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKR 915
>gi|62954913|gb|AAY23282.1| Similar to dna polymerase delta catalytic subunit (ec 2.7.7.7)
[Oryza sativa Japonica Group]
Length = 629
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 201/408 (49%), Gaps = 47/408 (11%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ V+P+ KG+
Sbjct: 61 VEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNI----------------KGQ 104
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRML---- 541
+ + G VLE + GFY+K I +DF SLYPSI+ YN+C+ T +P R L
Sbjct: 105 ASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPP 164
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 601
+ + T E + V GILP +++L+ +R++ KA +K+ + + D RQ AL
Sbjct: 165 ESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAV-LDGRQLAL 223
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIY 652
K++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N EVIY
Sbjct: 224 KISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIY 283
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M+ V+ + K+G + + + K ++L+ + +Y LL+ KK+YA L
Sbjct: 284 GDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGL- 342
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+N + + KG++ VRRD L + +IL +D + +
Sbjct: 343 --YWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKIL---------VDRDVPGAVQ 391
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
++K +DL V L+LL ITK LTK E V + L+ R R
Sbjct: 392 YVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKR 439
>gi|255514001|gb|EET90265.1| DNA polymerase Pol2 [Candidatus Micrarchaeum acidiphilum ARMAN-2]
Length = 826
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 183/384 (47%), Gaps = 50/384 (13%)
Query: 427 PLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEAN 486
P+ I++T GN LS + + EFLL+ H ++P NK + E
Sbjct: 388 PIMIELTRTTGNSLSDVSVSTTGQLVEFLLMKYAHRYGELIP------NKPDDREI---- 437
Query: 487 KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDI 546
+ R G V P+ G Y I DF LYPSII +NI S +
Sbjct: 438 --RSRLINPIEGAYVKTPEPGIYSNLAIF-DFRGLYPSIIISHNI----------DPSTV 484
Query: 547 TTLCEYLPEHQVDT-------GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599
T C E T GI+P +K L++ R +VK L K+ + + R +
Sbjct: 485 CTDCTDYYESPNGTKFSKSRPGIMPMILKLLIDQRAEVKKLYKKDKGN----IYLGSRSQ 540
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
ALK+T+NS YG LG+ SR++++ A+ VTA GR+ +L T S E ++VIYGDTDS++
Sbjct: 541 ALKITSNSFYGYLGYARSRWYSRECASSVTAYGRQYILQTISDAEEQGFKVIYGDTDSIV 600
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGK 719
+ + + +K KL K +EL+++ YK + + KK +I+
Sbjct: 601 MLLGGRTKEDALEF---VKKLNEKLPKSMELELEDFYKRAVFVGKKSEKIGAITGAKKKY 657
Query: 720 MICSQE----IKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKK 775
+ S+ I+G ++VRRDWS++A + + V+ IL+E S + E +K
Sbjct: 658 AMISESGFIKIRGFELVRRDWSRIARDTQRKVLDTILNEGS---------AEKAVEIVKN 708
Query: 776 IRTDLDNGFVPLTLLEITKQLTKA 799
+ DL +G VP+ +L I+ QL K
Sbjct: 709 VIKDLRDGKVPIGMLAISTQLRKG 732
>gi|443899075|dbj|GAC76406.1| ribonucleotide reductase, alpha subunit [Pseudozyma antarctica
T-34]
Length = 1160
Score = 141 bits (356), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 203/409 (49%), Gaps = 59/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A ++T V N L L G+ + L +E +Y++P
Sbjct: 584 KLMCFINYIEMA-RVTGVPFNYL---LSRGQQIKVVSQLFRKANEDNYLVP--------- 630
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
A KG+G + Y G VLEPK G+YD+ I +DF SLYPS++ +N+C+TT+
Sbjct: 631 -------AYKGEGTEDQ-YEGATVLEPKAGYYDRPIATLDFASLYPSVMMAHNLCYTTLL 682
Query: 538 -------VRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ + QD D +T ++ G+LP+ ++ L+ +R++ KA +K+ +
Sbjct: 683 DKKTIDRLDLKQDEDYVVTPNNNCFATKKLRKGLLPTVLENLLAARKRAKADLKK---ET 739
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D D RQ ALK++ANS+YG G + ++ TA GR+++ TK+ VE
Sbjct: 740 DPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLEISMSTTAYGRQMIDQTKAYVERH 799
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVY 696
+ EV+YGDTDS+MI V D ++G + + +K + ++L+ + VY
Sbjct: 800 YTIANGYQHDAEVVYGDTDSVMIKFGVPDLAKAMELGAEAAALVSKTFVDPIKLEFEKVY 859
Query: 697 KYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L +K KM + KG++ VRRD +L + ++L
Sbjct: 860 FPYLLISKKRYAGLYWTKPEKYDKM----DTKGIETVRRDNCRLVQTVIDTCLRKML--- 912
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ E+ K I +DL V ++ L ITK L KA K
Sbjct: 913 ------IDRDVKGAEEYAKNIISDLLQNKVDMSQLVITKALAKADYAAK 955
>gi|156407049|ref|XP_001641357.1| predicted protein [Nematostella vectensis]
gi|156228495|gb|EDO49294.1| predicted protein [Nematostella vectensis]
Length = 1092
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 204/408 (50%), Gaps = 67/408 (16%)
Query: 418 KIMCELNVLPLAIQITNV-CGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
K+MC +N + +A ++T V G +LSR G+ + LL H+ V+P
Sbjct: 515 KLMCVINYMEMA-RVTGVPMGYLLSR----GQQIKVMSQLLRKTHQTDLVIP----AHKA 565
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ GEE Y+G V+EP KG+Y+ I +DF+SLYPSI+ +N+C+T+
Sbjct: 566 EAGEE--------------YAGATVIEPNKGYYNIPIATLDFSSLYPSIMMAHNLCYTS- 610
Query: 537 PVRMLQDSDI----------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+L S + T + + V G+LP ++ L+ +R++ KA +K+
Sbjct: 611 ---LLHPSQVKETPPDQYIKTPSGNFFVKKSVRKGLLPEILEHLLTARKKAKADLKK--- 664
Query: 587 SSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + D RQ ALK++ANS+YG G + ++ VTA GR ++ TK LVE
Sbjct: 665 ETDPFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTAFGRMMIERTKELVE 724
Query: 645 N---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDG 694
+ +VIYGDTDS+M+ V ++GN+ ++ + K ++L+ +
Sbjct: 725 AKYTVANGYKTDAKVIYGDTDSVMVRFGVETVAESMELGNEAAEYVSEHFVKPIKLEFEK 784
Query: 695 VYKYMLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +K + KM C KG++ VRRD L + + ++L
Sbjct: 785 VYFPYLLISKKRYAGLYFTKPDKHDKMDC----KGIETVRRDNCPLVANLINACLKKLLI 840
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
E++ Q E+ K++ +DL + ++ L ITK+LTK E
Sbjct: 841 ERN---------PQGAVEYTKQVISDLLCNRIDISQLVITKELTKTGE 879
>gi|168003912|ref|XP_001754656.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694277|gb|EDQ80626.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1156
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 203/392 (51%), Gaps = 54/392 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL ++++VLP+ K +G +GE+
Sbjct: 587 VEMARVTGVPISFLLARGQSIKVLSQLLRKAKQRNFVLPNV-----KSQGVVSGES---- 637
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM-------LQ 542
+ G VL+ K G+YDK I +DF SLYPSI+ YN+C+ T+ VR L+
Sbjct: 638 ------FEGATVLDAKAGYYDKPIATLDFASLYPSIMMAYNLCYCTL-VRAEDQHYLRLE 690
Query: 543 DSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQ 598
+T + + ++ GILP +++L+ +R++ KA +K L++D L D RQ
Sbjct: 691 PEQVTKTPSGDMFVKPSLEKGILPEILEELLAARKRAKADLK---LATDPLEKAVLDGRQ 747
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYE 649
ALK++ANS+YG G + +++ VT+ GR+++ +TK LV+ + + E
Sbjct: 748 LALKISANSVYGFTGATIGQLPCLEISSSVTSFGRQMIDHTKKLVQERFTTANSYSHDAE 807
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYA 708
VIYGDTDS+M+ +D ++G + + + + Q ++L+ + VY LL+ KK+YA
Sbjct: 808 VIYGDTDSVMVQFGTSDVHEAMELGREAAQQISDTFTQPIKLEFEKVYWPYLLISKKRYA 867
Query: 709 ALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
L +K KM + KG++ VRRD L + +IL +D +
Sbjct: 868 GLLWTKPEKYDKM----DTKGIETVRRDNCLLVKNLVTECLHKIL---------IDRDIP 914
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+++K +DL + L+LL ITK LTKA
Sbjct: 915 GAIQYVKNTISDLLMNRMDLSLLVITKGLTKA 946
>gi|300707422|ref|XP_002995919.1| hypothetical protein NCER_101069 [Nosema ceranae BRL01]
gi|239605160|gb|EEQ82248.1| hypothetical protein NCER_101069 [Nosema ceranae BRL01]
Length = 977
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/343 (31%), Positives = 177/343 (51%), Gaps = 32/343 (9%)
Query: 494 AAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQD---SDITTLC 550
+ Y GG V++P +GFY + I ++DF+SLYPSI+ N+C++T+ + D T
Sbjct: 464 STYEGGFVMDPMRGFYPQPIAVLDFSSLYPSIMISRNLCYSTLLTKEQYDKFGGTKTPTN 523
Query: 551 EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD--LLMQYDIRQKALKLTANSM 608
Y + +V G+LP + L+ SR+ K K+ N SD + + RQ A+K+ ANS+
Sbjct: 524 NYFVDSKVKQGLLPKVLINLLASRKATK---KEMNAESDPGIKACLNARQTAIKVCANSI 580
Query: 609 YGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIYGDTDSLM 659
YG G + ++ T+ GRE++ TK+++E+ + VIYGDTDS+M
Sbjct: 581 YGFTGANTGKLPCVEISQSTTSFGREMIAFTKNIIESTFCKEKGYSHDSIVIYGDTDSVM 640
Query: 660 ISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
I+ ND VF++ ++I K K + L+ + VY LL+ KK+YA L + +
Sbjct: 641 INFKENDMKRVFEMASEISEFVTTKFIKPVSLEFEKVYYPYLLINKKRYAGLIYNNPNTP 700
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
I + KG++ VRRD L E + +++IL D ++ ++KKI
Sbjct: 701 SKI---DTKGIETVRRDNCNLVKEVIETCLNKIL---------YDKDVEGAKTYVKKIVQ 748
Query: 779 DLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRR 821
DL G + L+ L I+K +TKA G K Q + + R+R
Sbjct: 749 DLYQGKIDLSQLVISKSITKA--GDKYASKQAHVELAEKMRKR 789
>gi|324120712|dbj|BAJ78747.1| DNA polymerase delta catalytic subunit [Nomadacris japonica]
Length = 1092
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 200/408 (49%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L+ L G+ + LL E++Y++P
Sbjct: 516 KLMCIINYMEMA----RVTGVSLASLLTRGQQIKVVSQLLRKARERNYLMP--------- 562
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G G ++ + G V+EPKKG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 563 --------AYGGGAQEEQFEGATVIEPKKGYYSDPIATLDFSSLYPSIMMAHNLCYTTLL 614
Query: 538 VRMLQD--------SDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ +D T Y V G+LP ++ L+ +R++ K +K+ +D
Sbjct: 615 QGVAKDRLGLSPDQYTKTPAGNYFVRQSVCKGLLPEILENLLSARKRAKEELKR---ETD 671
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE--- 644
+ D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 672 PFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQHY 731
Query: 645 NL------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
N+ + EVIYGDTDS+M+ V ++ +G + +K K ++L+ + VY
Sbjct: 732 NIANGYEHDSEVIYGDTDSVMVKFGVKSLEAAMALGREAAEYVSSKFVKPIKLEFEKVYF 791
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L E+
Sbjct: 792 PYLLINKKRYAGLYFTQPDKYDKMDC----KGIETVRRDNCPLVANMMNTCLQKLLIERD 847
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
D ++ E+ K+I +DL + ++ L ITK+LTK+ K
Sbjct: 848 -PDGAV--------EYAKQIISDLLCNRIDISQLVITKELTKSDYAAK 886
>gi|288931848|ref|YP_003435908.1| DNA polymerase Pol2 [Ferroglobus placidus DSM 10642]
gi|288894096|gb|ADC65633.1| DNA polymerase Pol2 [Ferroglobus placidus DSM 10642]
Length = 785
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/339 (30%), Positives = 172/339 (50%), Gaps = 50/339 (14%)
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
E + GE + +Y G VLEP +G + K ++ +DF S+YPSI+ YNI T
Sbjct: 372 EAYKIGEIAPNPAEVEESYEGAFVLEPSRGLH-KNVVCLDFASMYPSIMIAYNISPDTYV 430
Query: 538 VRMLQDSDITTLCEYLPE--HQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLM 592
D C PE H+ G +K L+E RR++K MK + +S +
Sbjct: 431 FGKCDD------CYVAPEVGHKFRKHPDGFFKRILKMLIEKRREIKNQMKSLDRNSREYL 484
Query: 593 QYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIY 652
+I+Q+ LK+ NS YG G+ +R++ + A TA GR ++ + + + L +EV+Y
Sbjct: 485 LLNIKQQTLKILTNSFYGYTGWSGARWYCRQCAEATTAWGRHLIKSAVEIAKKLGFEVLY 544
Query: 653 GDTDSLMISCNVNDYDSVFKIGN----QIKSECNKLYKQL------ELDIDGVYKYMLLL 702
GDTDS+ + K GN +I+ E KL +++ ++++D YK + +
Sbjct: 545 GDTDSIFV-----------KKGNLSLEKIRGEVEKLIEEISEKFPVQIEVDEYYKTIFFV 593
Query: 703 KKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSL 762
+KK+YA L+ +G ++ +KG++V R DW +LA E K VI IL E++
Sbjct: 594 EKKRYAGLT----EDGILV----VKGLEVRRGDWCELAKEVQKKVIEIILKEEN------ 639
Query: 763 DDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ E+++K+ D+ +G V L + I K LTK P+
Sbjct: 640 ---PEKAAEYVRKVINDIKSGKVKLEDVVIYKGLTKRPD 675
>gi|324120740|dbj|BAJ78761.1| DNA polymerase delta catalytic subunit [Bemisia tabaci]
Length = 1094
Score = 141 bits (355), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 200/411 (48%), Gaps = 64/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L+ L G+ + LL EK +++P
Sbjct: 515 KLMCFINYMEMA----RVTGVPLASLLTRGQQIKVVSQLLRKAREKGFLMP--------- 561
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
TG G++ + G V+EPKKG+Y++ I +DF+SLYPSI+ +N+C+TT+
Sbjct: 562 --THTG------GQQDDQFEGATVIEPKKGYYNEPIATLDFSSLYPSIMMAHNLCYTTLL 613
Query: 538 VRMLQD-----SDI---TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
++D D+ T + + V G+LP + L+ +R++ KA +K+ +D
Sbjct: 614 QPNMKDKLNLSPDMYVKTPAQNFFVKSSVRKGLLPEILDDLLTARKKAKADLKK---ETD 670
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 671 PFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQHY 730
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ EVIYGDTDS+M+ ++ + +G + +K ++L+ + VY
Sbjct: 731 CIANGFKYDAEVIYGDTDSVMVRFGFDNLEETMNLGREAAEYVTSKFINPIKLEFEKVYF 790
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---D 753
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L D
Sbjct: 791 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNCPLVANVMNMCLQKLLIDRD 846
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+ S Y+ KK+ +DL + ++ L ITK+LTK+ K
Sbjct: 847 QVSAVAYA------------KKVISDLLCNRMDISQLVITKELTKSDYAAK 885
>gi|409040940|gb|EKM50426.1| hypothetical protein PHACADRAFT_104509 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1068
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 130/412 (31%), Positives = 207/412 (50%), Gaps = 62/412 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A ++T V N L L G+S + L +E+ YV+P
Sbjct: 484 KLMCFINYIEMA-RVTGVPFNYL---LSRGQSIKVLSQLFRKANEEEYVVP--------- 530
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
A +G+G + Y G V+EP KG+Y I +DF SLYPSI+ +N+C+TT+
Sbjct: 531 -------ALRGEGTDEQ-YEGATVIEPHKGYYKAPIATLDFASLYPSIMMAHNLCYTTLL 582
Query: 538 -------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ + +D D T ++ + G+LP ++ L+ +R++ KA +K+ +
Sbjct: 583 DKGTIDRLGLEKDVDYIQTPNNDFFATAKRRKGLLPIILEDLISTRKRAKADLKK---ET 639
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D D RQ ALK++ANS+YG G + P+++ TA GR+++ TK VE
Sbjct: 640 DPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLPISSSTTAFGRQMIEKTKQEVEAE 699
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSE--CNKLYKQLELDIDGV 695
+ EVIYGDTDS+M+ D ++V ++G +E K K ++L+ + V
Sbjct: 700 YCIANGHAHDAEVIYGDTDSVMVKFGPTDLETVMQLGASQAAEFVTQKFIKPIKLEFEKV 759
Query: 696 YKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDV--VRRDWSQLASEAGKFVISQIL 752
Y LL+ KK+YA L ++ KM + KG++ VRRD +L S VIS L
Sbjct: 760 YFPYLLISKKRYAGLYWTRPDKYDKM----DTKGIEARTVRRDNCRLVST----VISTCL 811
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++ +D + E+ K+I +DL V ++ L ITK L KA GK
Sbjct: 812 NKM-----LIDRDVDGAIEYTKQIISDLLQNKVDMSQLVITKALAKADYAGK 858
>gi|324120730|dbj|BAJ78756.1| DNA polymerase delta catalytic subunit [Reticulitermes speratus]
Length = 1033
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 194/408 (47%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +++ V G LS L G+ + LL EK Y++P
Sbjct: 456 KLMCVINYM----EMSRVTGVSLSSLLTRGQQIKVVSQLLRKAREKGYLMP--------- 502
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
G G ++ Y G V+EPKKG+Y + +DF+SLYPSI+ +N+C+TT+
Sbjct: 503 --------AYGGGVQEEQYEGATVIEPKKGYYSDPVATLDFSSLYPSIMMAHNLCYTTLL 554
Query: 537 ----PVRMLQDSDI---TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
P R+ D T + V G+LP ++ L+ +R++ KA +K+ D
Sbjct: 555 QPGAPSRLGLSPDQYIKTPASNFFVNKSVRKGLLPEILENLLAARKKAKADLKE---EKD 611
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 612 PFRQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQHY 671
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYK 697
+ EVIYGDTDS+M+ V + ++G + + + + L+ + VY
Sbjct: 672 NVANGYKNDAEVIYGDTDSVMVKFGVKTLEEAMELGRDAANYVSTRFPPPIRLEFEKVYF 731
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD S L + + ++L
Sbjct: 732 PYLLISKKRYAGLYFTRPDRYDKMDC----KGIETVRRDNSPLVANMMNTCLQKLL---- 783
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D E+ K++ +DL + ++ L ITK+L K+ K
Sbjct: 784 -----IDRDPDGAVEYAKQVISDLLCNRIDISQLVITKELAKSDYAAK 826
>gi|156086780|ref|XP_001610797.1| DNA polymerase delta subunit [Babesia bovis T2Bo]
gi|154798050|gb|EDO07229.1| DNA polymerase delta subunit [Babesia bovis]
Length = 1065
Score = 140 bits (354), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 200/404 (49%), Gaps = 44/404 (10%)
Query: 472 YGKNKKEGEETGEANKGK--GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
Y + K G N + +A+Y G VLEPKKG++ I ++DF SLYPSI+ +
Sbjct: 522 YRQCKLMGYAVPSVNAAQRAANSEASYEGATVLEPKKGYHRNAIAVLDFQSLYPSIMIAH 581
Query: 530 NICFTT-IP---VRMLQDSDITTLC----EYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
N+C++T +P D+TT+ Y + V G+LP +++L+E+R++ K M
Sbjct: 582 NLCYSTLVPPADASKYPAEDLTTVPGHPGLYFIKAHVRKGMLPLIVERLIEARKKAKEEM 641
Query: 582 K---QPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFF-AQPLAALVTAKGREILL 637
K P L S L D RQ ALK+T NS+YG G S F +A +T+ GR +++
Sbjct: 642 KVCTDPMLRSVL----DGRQLALKITTNSVYGYTGASTSGFLPCVEVATAITSFGRYMIV 697
Query: 638 NTKSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQ 687
+TK +E + + V+YGDTDS+MI+ D ++G Q + N+ K
Sbjct: 698 DTKEKIESHFTKANGYDTDASVVYGDTDSVMINFGTKDISRAIELGVQAAAMITNQAIKP 757
Query: 688 LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFV 747
+ L + VY +LLL KK+YA L +K I + KG++ VRRD+ L + + +
Sbjct: 758 ITLLFEKVYLPLLLLAKKRYAGLYYTKADKYDKI---DCKGIETVRRDFCLLVQQMMERI 814
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKK-IRTDLDNGFVPLTLLEITKQLTKAPEGGKVC 806
+ +L D L+ ++ + + + +R ++D ++LL +TK L K +
Sbjct: 815 LHMLL-----VDLDLNGAIEFVKSRISQLLRNEID-----ISLLVVTKSLGKVDYDAR-- 862
Query: 807 ITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEE 850
+ + L++ R R + ++ + G + + + + EE
Sbjct: 863 LPHVELAKKLRQRDPGKAPSVGDRVSYLIVKGTKNQPQFDRAEE 906
>gi|240103512|ref|YP_002959821.1| DNA-directed DNA polymerase, B family (pol) [Thermococcus
gammatolerans EJ3]
gi|239911066|gb|ACS33957.1| DNA-directed DNA polymerase, B family (pol) [Thermococcus
gammatolerans EJ3]
Length = 775
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 170/346 (49%), Gaps = 42/346 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q++ + G L E+ LL +E++ + P N
Sbjct: 317 KVTYELGREFFPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYERNELAP------N 370
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K + E R++ +Y+GG V EP++G +D I+ +DF SLYPSII +N+ T
Sbjct: 371 KPDERELA-------RRRESYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSS 588
+ ++ D+ C+ P G +PS + L+E R+++K MK L
Sbjct: 423 LNREGCKEYDVAPEVGHKFCKDFP------GFIPSLLGDLLEERQKIKRKMKATIDPLEK 476
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT-KSLVENLN 647
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GRE + T + + E
Sbjct: 477 KLL---DYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIETTIREIEEKFG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++V+Y DTD + D ++V K + N KL LEL+ +G Y + KKK
Sbjct: 534 FKVLYADTDGFFATIPGADAETVKKKAKEFLKYINAKLPGLLELEYEGFYVRGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + GK+ +G+++VRRDWS++A E V+ IL
Sbjct: 594 YAVID----EEGKITT----RGLEIVRRDWSEIAKETQARVLEAIL 631
>gi|324120746|dbj|BAJ78764.1| DNA polymerase delta catalytic subunit [Neocolochelyna itoi]
Length = 1003
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 125/411 (30%), Positives = 196/411 (47%), Gaps = 64/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L G+ + LL E+ Y++P Q
Sbjct: 424 KLMCIINYMEMA----RVTGVSLCSLLTKGQGVKVVSQLLRKARERGYLMPTHQ------ 473
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
G+ T E Y G V+EPK+G+Y+ I +D++SLYPSII +NIC+TT+
Sbjct: 474 -GQGTDEQ----------YEGATVIEPKRGYYNDPIATLDYSSLYPSIIMAHNICYTTLL 522
Query: 537 -P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
P +++ +D T + V G+LP ++ L+ +R+ K +K D
Sbjct: 523 GPATQHKLKLTEDKYTRTPTTAMFVKSSVRKGLLPEILENLLTARKAAKTELKN---EKD 579
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
Q D RQ ALK++ANS+YG G N + +++ TA GRE++ TK VE
Sbjct: 580 PFKQKVLDGRQLALKVSANSVYGFTGAQNGKLPCLEISSSTTAYGREMIEQTKQEVEQRY 639
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYK 697
+ VIYGDTDS+M+ V + ++G + + K K ++L+ + +Y
Sbjct: 640 CVANGYKHDAVVIYGDTDSVMVKFGVKTIEDAMELGTEAAEFVSLKFIKPIKLEFEKIYF 699
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---D 753
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L D
Sbjct: 700 PYLLINKKRYAGLLFTRPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLLIERD 755
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
TDY+ K+I +DL + ++ L ITK+LTK K
Sbjct: 756 PDGATDYA------------KQIISDLLCNRIDISQLVITKELTKTEYAAK 794
>gi|410902099|ref|XP_003964532.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Takifugu
rubripes]
Length = 1104
Score = 140 bits (353), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 199/406 (49%), Gaps = 61/406 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L+ L G+ + LL ++ V+P K
Sbjct: 529 KLMCVINYMEMA----RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVKT 579
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y+G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 580 EGGED-------------YTGATVIEPEKGYYSIPIATLDFSSLYPSIMMAHNLCYTTL- 625
Query: 538 VRMLQDSDI--------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
++ QD D T + + V G+LP ++ L+ +R++ KA +K+ +D
Sbjct: 626 LQNTQDKDSLSPEDFIKTPTGNFFVKSSVRKGLLPEILENLLSARKRAKAELKK---ETD 682
Query: 590 LL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
D RQ ALK++ANS+YG G + ++ VT GR+++ TK LVE+
Sbjct: 683 PFKRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLVESKY 742
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYK 697
+ +VIYGDTDS+M+ V + IG + + + ++L+ + VY
Sbjct: 743 TISNGYQADAKVIYGDTDSVMVKLGVATVNEAMSIGREAAEWVSSHFISPIKLEFEKVYY 802
Query: 698 YMLLLKKKKYAAL--SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L S S ++ KM C KG++ VRRD L + + +IL
Sbjct: 803 PYLLINKKRYAGLYFSSSADTHDKMDC----KGIETVRRDNCPLVANLINTCLQKIL--- 855
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+D Q +H K++ +DL + ++ L ITK+LT+ +
Sbjct: 856 ------IDRDPQGAVDHAKEVISDLLCNRIDISQLVITKELTRTAQ 895
>gi|393240523|gb|EJD48049.1| hypothetical protein AURDEDRAFT_102277 [Auricularia delicata
TFB-10046 SS5]
Length = 1067
Score = 140 bits (352), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 122/425 (28%), Positives = 209/425 (49%), Gaps = 61/425 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+ + L+ E Y++P
Sbjct: 488 KLMCFVNYTEMA-RVTGVPFNFL---LARGQQIKVISQLMRKAKEDGYLIP--------- 534
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
A KG+G Y G V++PK G+Y + I +DF+S+YPSI+ +NIC+TT+
Sbjct: 535 -------AMKGEGSDDQ-YEGATVIDPKTGYYKEPIATLDFSSMYPSIMMGHNICYTTMT 586
Query: 538 -------VRMLQDSDITTLCE--YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ +++D D T + + + G+LP+ ++ L+ +R++ KA +K +
Sbjct: 587 DKQTIDRLGLVKDVDYTQTPQNTFFVKPGRRKGLLPTILENLLSARKRAKADLKN---ET 643
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN- 645
D D RQ ALK++ANS+YG G +++ TA GR+++ TKS+VE+
Sbjct: 644 DPFKRAVLDGRQLALKISANSVYGFPGASTGHLPCTDISSTTTAYGRQMIEKTKSVVEDH 703
Query: 646 --------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVY 696
+ +V+YGDTDS+M+ +D + ++G + + K ++L+ + VY
Sbjct: 704 YRIVNGFEHDAQVVYGDTDSVMVKFGPSDLATCMRLGAEAADLVTTHFVKPVKLEFEKVY 763
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +K + + KG++ VRRD +L S V+ ++L
Sbjct: 764 WPYLLINKKRYAGLYWTKTDKYDKL---DAKGIESVRRDNCRLVSTTIDTVLHKML---- 816
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNR 816
+D ++KK+ +DL + ++ L ITK L KA GK Q + +
Sbjct: 817 -----IDQDPDGAVTYVKKVISDLLQNKIDMSQLVITKALAKADYAGK----QAHVELAQ 867
Query: 817 RGRRR 821
R R+R
Sbjct: 868 RMRQR 872
>gi|19112916|ref|NP_596124.1| DNA polymerase delta catalytic subunit Cdc6 [Schizosaccharomyces
pombe 972h-]
gi|12644199|sp|P30316.2|DPOD_SCHPO RecName: Full=DNA polymerase delta catalytic subunit; AltName:
Full=DNA polymerase III
gi|6048293|emb|CAB58156.1| DNA polymerase delta catalytic subunit Cdc6 [Schizosaccharomyces
pombe]
Length = 1086
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 178/346 (51%), Gaps = 40/346 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRMLQDSD--I 546
Y G V+EP KG+YD I +DF+SLYPSI+Q +N+C+TT+ +++ QD D +
Sbjct: 566 YEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDYSV 625
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKALKL 603
T +Y + V G+LP + L+ +R++ KA +K+ P + L D RQ ALK+
Sbjct: 626 TPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKKETDPFKKAVL----DGRQLALKV 681
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G N R +++ VT+ GR+++ TK +VE + + VIYGD
Sbjct: 682 SANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIYGD 741
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ V K+G + + + + ++L+ + VY LL+ KK+YA L +
Sbjct: 742 TDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAGLFWT 801
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ + S KG++ VRRD L S + ++L +D ++
Sbjct: 802 RTDTYDKMDS---KGIETVRRDNCPLVSYVIDTALRKML---------IDQDVEGAQLFT 849
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
KK+ +DL + ++ L ITK L+K K + + L+ R R
Sbjct: 850 KKVISDLLQNKIDMSQLVITKALSKTDYAAK--MAHVELAERMRKR 893
>gi|3913540|sp|Q56366.1|DPOL_THES9 RecName: Full=DNA polymerase
gi|1197452|gb|AAA88769.1| DNA polymerase [Thermococcus sp. 9oN-7]
Length = 775
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 170/346 (49%), Gaps = 42/346 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q++ + G L E+ LL ++++ + P N
Sbjct: 317 KVTYELGREFFPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAP------N 370
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K + E R++ Y+GG V EP++G +D I+ +DF SLYPSII +N+ T
Sbjct: 371 KPDERELA-------RRRGGYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSS 588
+ ++ D+ C+ P G +PS + L+E R+++K MK L
Sbjct: 423 LNREGCKEYDVAPEVGHKFCKDFP------GFIPSLLGDLLEERQKIKRKMKATVDPLEK 476
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLN 647
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GRE + + + L E
Sbjct: 477 KLL---DYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++V+Y DTD L + D ++V K + N KL LEL+ +G Y + KKK
Sbjct: 534 FKVLYADTDGLHATIPGADAETVKKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + GK+ +G+++VRRDWS++A E V+ IL
Sbjct: 594 YAVID----EEGKITT----RGLEIVRRDWSEIAKETQARVLEAIL 631
>gi|390596710|gb|EIN06111.1| delta DNA polymerase [Punctularia strigosozonata HHB-11173 SS5]
Length = 1052
Score = 140 bits (352), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 179/339 (52%), Gaps = 37/339 (10%)
Query: 487 KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VR 539
KG+G + Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT+ ++
Sbjct: 520 KGEGSDEQ-YEGATVIEPKKGYYDSPIATLDFSSLYPSIMMAHNLCYTTLLDKATIDRLQ 578
Query: 540 MLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYD 595
+++D D T ++ G+LP+ ++ L+ +R++ KA +K+ SD D
Sbjct: 579 LVKDVDYIQTPNNDFFVTSTKRKGLLPTILEDLISARKRAKADLKK---ESDPFKRAVLD 635
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NL 646
RQ ALK++ANS+YG G + +++ T+ GR+++ TK VE +
Sbjct: 636 GRQLALKVSANSVYGFTGATIGKLPCLAISSSTTSYGRQMIEKTKQEVEAEYCIANGHSH 695
Query: 647 NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLLLKKK 705
N EVIYGDTDS+M+ +D V +G++ K K ++L+ + VY LL+ KK
Sbjct: 696 NAEVIYGDTDSVMVKFGPSDLKEVMALGSEAAEFVTTKFIKPIKLEFEKVYFPYLLISKK 755
Query: 706 KYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
+YA L +K + S KG++ VRRD +L S + + ++L +D
Sbjct: 756 RYAGLYWTKPEKYDKMDS---KGIETVRRDNCRLVSTVIETCLHKML---------IDRD 803
Query: 766 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++ E+ K++ +DL V ++ L ITK L KA K
Sbjct: 804 VKGAEEYTKQMISDLLQNKVDMSQLVITKALAKADYAAK 842
>gi|126459662|ref|YP_001055940.1| DNA polymerase II [Pyrobaculum calidifontis JCM 11548]
gi|126249383|gb|ABO08474.1| replicative DNA polymerase I [Pyrobaculum calidifontis JCM 11548]
Length = 783
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 117/375 (31%), Positives = 186/375 (49%), Gaps = 50/375 (13%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP IQ+++V G L + R E++LL + V P N++E
Sbjct: 347 LLPFLIQLSSVSGLPLDQVAAASVGNRVEWMLLRYAYRMGEVAP------NREE------ 394
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQ 542
R+ Y G +VLEPK G Y ++L DF+S+YP+I+ +YN+ T P
Sbjct: 395 ------REYEPYKGAIVLEPKPGLYSDVLVL-DFSSMYPNIMMKYNLSPDTYLEP----H 443
Query: 543 DSDITTLCEYLPE-----HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 597
+ D PE + TG +P+ +K LVE RR V+ K+ S D R
Sbjct: 444 EPDPPEGVVVAPEVGHRFRKAPTGFIPAVLKHLVELRRAVREEAKKYPPDSPEYRLLDER 503
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 657
Q+ALK+ AN+MYG LG+ +R++ + +A VTA R ILL+ + L EVIYGDTDS
Sbjct: 504 QRALKVMANAMYGYLGWVGARWYKKEVAESVTAFARAILLDVVEYAKRLGIEVIYGDTDS 563
Query: 658 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLS 716
L + + +V ++ ++ +E+ +D Y+ +L + KK+YA L L
Sbjct: 564 LFVKKS----GAVDRLVKYVEERHG-----IEIKVDKDYERVLFTEAKKRYAGL----LR 610
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY--SLDDRLQNIHEHMK 774
+G++ +I G +VVR DW +LA E V+ IL +S + + ++ + E +K
Sbjct: 611 DGRI----DIVGFEVVRGDWCELAKEVQLNVVELILKSKSVGEARERVVKYVREVVERLK 666
Query: 775 KIRTDLDNGFVPLTL 789
+ DLD+ + TL
Sbjct: 667 AYKFDLDDLIIWKTL 681
>gi|308800812|ref|XP_003075187.1| DPOD1_ORYSA DNA polymerase delta catalytic subunit gb|AAX96341.1|
dna pol (ISS) [Ostreococcus tauri]
gi|116061741|emb|CAL52459.1| DPOD1_ORYSA DNA polymerase delta catalytic subunit gb|AAX96341.1|
dna pol (ISS), partial [Ostreococcus tauri]
Length = 1115
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 120/408 (29%), Positives = 204/408 (50%), Gaps = 43/408 (10%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I++ V G L+ L G+S + LL +++ ++P K+EG +A G
Sbjct: 539 IEMARVTGVPLNYLLTRGQSIKVMSQLLRKARQRNMLIPHMA----KREGGNV-QAEGG- 592
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRML-----QD 543
AY G VLE K G+Y+ + +DF SLYPSI+ +N+C++T +P M+ +D
Sbjct: 593 ----VAYEGATVLEAKSGYYEVPVATLDFASLYPSIMMAHNLCYSTLVPKHMVSKLNPED 648
Query: 544 SDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 601
+ + + GILP +++L+ +R++ KA +K+ ++D ++ D RQ AL
Sbjct: 649 VGTSPAGDTFVKANNVKGILPEILEELLGARKRAKADLKK---ATDPFVKAVLDGRQLAL 705
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIY 652
K++ANS+YG G + +++ TA GR ++ +TK +VE N EVIY
Sbjct: 706 KISANSVYGFTGATVGQLPCLEISSSTTAYGRTMIDHTKKMVEERYTTMNGYAGNAEVIY 765
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+MI N D ++G + + + K ++L+ + VY LL+ KK+YA L
Sbjct: 766 GDTDSVMIKFNTPDLAEAMRLGEEAAVYVSDTFLKPIKLEFEKVYWPYLLISKKRYAGL- 824
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+N + + KG++ VRRD L + + V+ +IL E+ +Q +
Sbjct: 825 --LWTNTEKYDKMDTKGIETVRRDNCLLVRQVVETVLEKILKERD---------VQGAVK 873
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+++ DL + + L ITK TK + V + I L++ R R
Sbjct: 874 YVQNTIADLLMNKLDFSQLVITKGFTKEADSYGVKMAHIELAQRMRQR 921
>gi|173384|gb|AAA35303.1| DNA polymerase delta [Schizosaccharomyces pombe]
Length = 1086
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 178/346 (51%), Gaps = 40/346 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRMLQDSD--I 546
Y G V+EP KG+YD I +DF+SLYPSI+Q +N+C+TT+ +++ QD D +
Sbjct: 566 YEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDYSV 625
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKALKL 603
T +Y + V G+LP + L+ +R++ KA +K+ P + L D RQ ALK+
Sbjct: 626 TPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKKETDPFKKAVL----DGRQLALKV 681
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G N R +++ VT+ GR+++ TK +VE + + VIYGD
Sbjct: 682 SANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIYGD 741
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ V K+G + + + + ++L+ + VY LL+ KK+YA L +
Sbjct: 742 TDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAGLFWT 801
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ + S KG++ VRRD L S + ++L +D ++
Sbjct: 802 RTDTYDKMDS---KGIETVRRDNCPLVSYVIDTALRKML---------IDQDVEGAQLFT 849
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
KK+ +DL + ++ L ITK L+K K + + L+ R R
Sbjct: 850 KKVISDLLQNKIDMSQLVITKALSKTDYAAK--MAHVELAERMRKR 893
>gi|268557320|ref|XP_002636649.1| Hypothetical protein CBG23360 [Caenorhabditis briggsae]
Length = 1081
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 124/405 (30%), Positives = 206/405 (50%), Gaps = 62/405 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+M +N + +A ++T V N L L G+ + ++L + ++ LP
Sbjct: 495 KLMSIINYIEMA-RVTGVPMNFL---LTKGQQIKILSMMLRRCKQNNFFLP--------- 541
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
EAN G G Y G V++P +GFY++ I +DF SLYPSI+ +N+C+TT+
Sbjct: 542 ----VIEANSGDGE---GYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLL 594
Query: 537 -PVRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL-- 591
+ +++ D T +Y G+LP ++ L+ +R++ K MK D
Sbjct: 595 KSPQGVENKDYIRTPSGQYFATKSKRRGLLPEILEDLLAARKRAKNDMKN---EKDEFKR 651
Query: 592 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL----- 646
M Y+ RQ ALK++ANS+YG G + ++ VTA GR+++ TKS VE +
Sbjct: 652 MVYNGRQLALKISANSVYGFTGATVGKLPCLEISQSVTAFGRKMIDMTKSEVERIYKKGA 711
Query: 647 -------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKY 698
+ +VIYGDTDS+M+ V + +IG + E +K++ ++L+ + VY
Sbjct: 712 LDGKCPADAKVIYGDTDSVMVKFGVENVAQAMEIGLEAAKEVSKIFTPPIKLEFEKVYFP 771
Query: 699 MLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DE 754
LL+ KK+YA L +K + KM C KG++ VRRD L ++ + ++L D+
Sbjct: 772 YLLINKKRYAGLYFTKPEVHDKMDC----KGLETVRRDNCPLVAKVLGVCLEKLLIDRDQ 827
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
QS D++ KK +DL + ++LL I+K+LTK+
Sbjct: 828 QSALDFA------------KKTISDLLCNKIDISLLIISKELTKS 860
>gi|383847575|ref|XP_003699428.1| PREDICTED: transmembrane protein 147-like isoform 2 [Megachile
rotundata]
Length = 219
Score = 139 bits (351), Expect = 6e-30, Method: Composition-based stats.
Identities = 69/97 (71%), Positives = 76/97 (78%), Gaps = 9/97 (9%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
ML LATF PT DN + +K SIDL D VG LVL+SIPGKGHAK+LTAGVGWA
Sbjct: 50 MLALATFFPTADN---------EFLKSSIDLADLVGILLVLNSIPGKGHAKVLTAGVGWA 100
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
GAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNI L+
Sbjct: 101 GAEVLLTRFLLLWVGARGAEFDWKYIQKSLESNINLV 137
>gi|12275270|emb|CAC22336.1| DNA polymerase [Leishmania major]
Length = 286
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 13/173 (7%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ K
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFKR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E + G++KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE++ICFTT+
Sbjct: 174 GRDDDEED---GKRKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFSICFTTVDR 230
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMK 582
+ D+ +C L + +LP IK LV+SRR+VK LMK
Sbjct: 231 ENRSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMK 283
>gi|453087535|gb|EMF15576.1| DNA polymerase delta catalytic subunit [Mycosphaerella populorum
SO2202]
Length = 1107
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 203/414 (49%), Gaps = 57/414 (13%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+ + L E+ V+PD K
Sbjct: 524 KLMCLVNYTEMA-RVTGVPFNFL---LSKGQQVKFISQLFRKALEQQLVVPDL-----KS 574
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
EG + Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT+
Sbjct: 575 EGSD------------EQYEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLL 622
Query: 537 ------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ + +D D +T + +V G+L +++L+ +R++ K K+ + +
Sbjct: 623 NKNAIAKLNLKKDEDYIVTPNGDLFCTTKVRKGLLSQILEELLGARKRAK---KELAIET 679
Query: 589 DLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D + + RQ ALK++ANS+YG G + +A+ TA GR+++ TK VE
Sbjct: 680 DPFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLAIASSTTAYGRQMIEKTKEEVEAR 739
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVY 696
+ + +VIYGDTDS+M+ ND ++GN NK K ++L+ + VY
Sbjct: 740 YTIANGYSHDAQVIYGDTDSVMVKFGPNDLAKAMELGNDAADYVSNKFIKPIKLEFEKVY 799
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +K + + KG++ VRRD +L Q L E S
Sbjct: 800 YPYLLINKKRYAGLYWTKPDKWDKM---DTKGIETVRRDNCRLV---------QNLIETS 847
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQI 810
+D +Q +++K+ ++L G + L+ L ITK L+K K T++
Sbjct: 848 LKMLLIDQDVQGAQDYVKETISELLQGRIDLSNLVITKALSKTDYANKQAHTEL 901
>gi|8569297|pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
Length = 775
Score = 139 bits (351), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 170/346 (49%), Gaps = 42/346 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q++ + G L E+ LL ++++ + P N
Sbjct: 317 KVTYELGREFFPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAP------N 370
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K + E R++ Y+GG V EP++G +D I+ +DF SLYPSII +N+ T
Sbjct: 371 KPDERELA-------RRRGGYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSS 588
+ ++ D+ C+ P G +PS + L+E R+++K MK L
Sbjct: 423 LNREGCKEYDVAPEVGHKFCKDFP------GFIPSLLGDLLEERQKIKRKMKATVDPLEK 476
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLN 647
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GRE + + + L E
Sbjct: 477 KLL---DYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++V+Y DTD L + D ++V K + N KL LEL+ +G Y + KKK
Sbjct: 534 FKVLYADTDGLHATIPGADAETVKKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + GK+ +G+++VRRDWS++A E V+ IL
Sbjct: 594 YAVID----EEGKITT----RGLEIVRRDWSEIAKETQARVLEAIL 631
>gi|343428135|emb|CBQ71665.1| probable DNA polymerase delta catalytic subunit [Sporisorium
reilianum SRZ2]
Length = 1057
Score = 139 bits (351), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 123/409 (30%), Positives = 202/409 (49%), Gaps = 59/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A ++T V N L L G+ + L +E +Y++P
Sbjct: 481 KLMCFINYIEMA-RVTGVPFNYL---LSRGQQIKVVSQLFRKANEDNYLVP--------- 527
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
A KG+G + Y G VLEPK G+YD+ I +DF SLYPS++ +N+C+TT+
Sbjct: 528 -------AYKGEGTEDQ-YEGATVLEPKAGYYDRPIATLDFASLYPSVMMAHNLCYTTLL 579
Query: 538 -------VRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ + QD D IT ++ G+LP+ ++ L+ +R++ KA +K+ +
Sbjct: 580 DKKTIDRLELKQDEDYVITPNNNCFATKKLRKGLLPTVLENLLAARKRAKADLKK---ET 636
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D D RQ ALK++ANS+YG G + ++ TA GR+++ TK+ VE
Sbjct: 637 DPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLEISMSTTAYGRQMIEQTKTYVERH 696
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVY 696
+ EV+YGDTDS+MI V D ++G + +K + ++L+ + VY
Sbjct: 697 YTIANGYEHDAEVVYGDTDSVMIKFGVPDLAKAMELGAEAAGLVSKTFVDPIKLEFEKVY 756
Query: 697 KYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L ++ KM + KG++ VRRD +L + ++L
Sbjct: 757 FPYLLISKKRYAGLYWTRPEKYDKM----DTKGIETVRRDNCRLVQTVIDTCLRKML--- 809
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ E+ K I +DL V ++ L ITK L K+ K
Sbjct: 810 ------IDRDVKGAEEYAKNIISDLLQNKVDMSQLVITKALAKSDYAAK 852
>gi|392565561|gb|EIW58738.1| delta DNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 1066
Score = 139 bits (351), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 120/409 (29%), Positives = 208/409 (50%), Gaps = 59/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+S + L ++ Y++P
Sbjct: 485 KLMCFINYTEMA-RVTGVPFNFL---LSRGQSIKVLSQLFRKANDDGYIVP--------- 531
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
A +G+G + Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 532 -------ALRGEGSDEQ-YEGATVIEPKKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL 583
Query: 538 -------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+++++D D T + + G+LP+ +++L+ +R++ KA +K+ +
Sbjct: 584 DKSTVERLKLVKDVDYIQTPNNDLFVKSTRRKGLLPTILEELIGARKRAKADLKK---ET 640
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D D RQ ALK++ANS+YG G + P+++ T+ GR+++ TK VE
Sbjct: 641 DPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLPISSSTTSYGRQMIEKTKQEVEAE 700
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVY 696
+ + VIYGDTDS+M+ D +V ++G++ K K ++L+ + VY
Sbjct: 701 YCIANGHSHDATVIYGDTDSVMVRFGPTDLPTVMRMGSEAADFVTAKFIKPIKLEFEKVY 760
Query: 697 KYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L ++ KM + KG++ VRRD +L S + + ++L
Sbjct: 761 FPYLLISKKRYAGLYWTRPEKYDKM----DTKGIETVRRDNCRLVSTVIETCLHKML--- 813
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + +++K+ +DL V ++ L ITK L+K K
Sbjct: 814 ------IDRDVGGAEDYVKQTISDLLQNKVDMSQLVITKALSKTDYASK 856
>gi|298714506|emb|CBJ27528.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1097
Score = 139 bits (351), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 115/422 (27%), Positives = 209/422 (49%), Gaps = 47/422 (11%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+K+M +L+V+ I++ V G L+ L G+ + +LL + ++P+
Sbjct: 526 MKLMEKLSVMVNYIEMARVTGVPLNFLLSRGQQIKVFSMLLRKTRSVNLLIPNLPKHAVD 585
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+E Y G V+EPKK FY++ I +DF SLYPSI+Q YN+C++T+
Sbjct: 586 QE----------------TYEGATVIEPKKAFYEEPIATLDFASLYPSIMQAYNLCYSTL 629
Query: 537 PV-----RMLQDSDITTLC-EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 590
++ D +T+ + + +V G+LP+ + +L+ +R+Q K M +
Sbjct: 630 VAGEDKNKLKPDQYLTSPSGDVFVKSEVTKGLLPAILDELLTARKQAKRDMAAATDPMEK 689
Query: 591 LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE------ 644
+Q + RQ ALK++ANS+YG G + P+A+ T+ GR++L T+S VE
Sbjct: 690 AVQ-NGRQLALKVSANSVYGFTGATVGQLPCLPIASSTTSYGRDLLFRTRSYVEETYTVA 748
Query: 645 ---NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYML 700
+ + +V+YGDTDS+M+ + + E +K++ + ++L+ + VY L
Sbjct: 749 NGYDHDADVVYGDTDSVMVKFGSKTVAEAMPLAEKAAEEVSKIFPRPIKLEFEKVYWPYL 808
Query: 701 LLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
L+ KK+YA L +K+ KM + KG++ VRRD L + + ++L
Sbjct: 809 LMNKKRYAGLLWTKVDKYDKM----DTKGLETVRRDNCLLVRKVVDTCLRKVL------- 857
Query: 760 YSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+D +Q + K++ ++L + ++LL ITK L K+ + Q + R +
Sbjct: 858 --IDRDVQGAITYSKQVISELLQNRMDISLLVITKSLGKSADSEGYTAKQAHVELAMRMK 915
Query: 820 RR 821
+R
Sbjct: 916 KR 917
>gi|448103715|ref|XP_004200106.1| Piso0_002676 [Millerozyma farinosa CBS 7064]
gi|359381528|emb|CCE81987.1| Piso0_002676 [Millerozyma farinosa CBS 7064]
Length = 1079
Score = 139 bits (351), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 126/408 (30%), Positives = 204/408 (50%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A V G S L G+ + L E + V+P+ K
Sbjct: 502 KLMCLVNYTEMA----RVTGVPFSYLLARGQQIKVISQLFRKCLEDNIVIPNM-----KS 552
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
EG T E Y G +V+EP +G+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 553 EG--TNED----------YEGAIVIEPVRGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL 600
Query: 537 ---PVRMLQ----DSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LS 587
+ L D +T +Y + GILP+ +K+L+ +R++ KA +K+
Sbjct: 601 NKQTINTLNLKEDDYTLTPNGDYFVKDHKRKGILPTILKELLTARKKAKADLKKETDPFK 660
Query: 588 SDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
D+L + RQ ALK++ANS+YG G + +++ VTA GRE++ TK+ V+
Sbjct: 661 KDVL---NGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAFGREMIEKTKNEVQEHY 717
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYK 697
+ +VIYGDTDS+M+ ND ++ K G + + + +K ++L+ + VY
Sbjct: 718 SIKNGFPFDSQVIYGDTDSVMVRFGFNDLETCMKYGEEAANYVSTKFKDPIKLEFEKVYF 777
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
LL+ KK+YA L +N + + KG++ VRRD +L VI+++L
Sbjct: 778 PYLLINKKRYAGL---YWTNPQKFDKMDTKGIETVRRDNCRLVQN----VITKVL----- 825
Query: 758 TDYSLDDRLQNIHEH-MKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+Y L++R EH +K+ DL + L+ L ITK +K K
Sbjct: 826 -EYILEERDVAKAEHYVKQTIADLLQNRIDLSQLVITKAYSKHDYAAK 872
>gi|307203676|gb|EFN82660.1| DNA polymerase delta catalytic subunit [Harpegnathos saltator]
Length = 1054
Score = 139 bits (350), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 202/414 (48%), Gaps = 70/414 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + + +++ V G +S L G+ + LL EK Y++P Q
Sbjct: 475 KLMCII----IYMEMARVTGVSISSLLTRGQQIKVVSQLLRKTREKDYLMPVHQ------ 524
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G T E + GG V+EPK+G+Y+ I +DF+SLYPSII +N+C+TT+
Sbjct: 525 -GHGTDEQ----------FEGGTVIEPKRGYYNDPIATLDFSSLYPSIIMAHNLCYTTL- 572
Query: 538 VRMLQDSDITTLCEYLPEHQVDT--------------GILPSEIKKLVESRRQVKALMKQ 583
+ + + ++ +PE V+T GILP ++ L+ +R++ K +KQ
Sbjct: 573 LTIAKKKELN-----IPEDDVNTTPSNSLFVKSSVRKGILPEILENLLAARKKAKVELKQ 627
Query: 584 PNLSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
+D L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK
Sbjct: 628 ---ETDPLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISAGVTAYGRTMIERTKQ 684
Query: 642 LVENL---------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELD 691
VE + VIYGDTDS+M+ V ++G + +K K ++L+
Sbjct: 685 EVEEHFRIENGYKNDAIVIYGDTDSVMVKFGVESIVEAMELGKEAADYVSSKFVKPIKLE 744
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
+ VY LL+ KK+YA L +K KM C KG++ VRRD L + +
Sbjct: 745 FEKVYFPYLLINKKRYAGLYFTKPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQI 800
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+L E++ +LD + K++ +DL + L+ L ITK+LTK K
Sbjct: 801 LLIERN-PHAALD--------YAKQVISDLLCNRIDLSQLVITKELTKTDYAAK 845
>gi|124027770|ref|YP_001013090.1| DNA polymerase II [Hyperthermus butylicus DSM 5456]
gi|123978464|gb|ABM80745.1| DNA polymerase III [Hyperthermus butylicus DSM 5456]
Length = 804
Score = 139 bits (350), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 192/380 (50%), Gaps = 51/380 (13%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP AIQ++ V G L + + G R E+ L+ A +E + ++P N+ E
Sbjct: 366 MLPFAIQLSTVTGIPLDQVGVMGVGFRLEWYLIRAAYEMNELVP------NRVE------ 413
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 544
R + +Y G +VL+P KG ++ ++L DF+S+YP+I+ +YN+ TI V +
Sbjct: 414 ------RHEESYRGAVVLKPLKGVHENVVVL-DFSSMYPNIMIKYNVGPDTI-VDDPAEC 465
Query: 545 DITTLCEYLPE--HQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599
+ C PE H+ G + ++ L+ R+QV+ MK+ S YD RQ+
Sbjct: 466 EKYGGCYVAPEVGHRFRKQPPGFFKTVLENLLRLRKQVREKMKELPPESPEYRLYDERQR 525
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
ALK+ AN+ YG +G+ +R++ + A VTA GR ++L+ L +VIYGDTDSL
Sbjct: 526 ALKVLANASYGYMGWSGARWYCKRCAEAVTAWGRSLILSAIEYARKLGLKVIYGDTDSLF 585
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNG 718
++ + K+ I N L E+ ID +Y+ + + KK+Y L L +G
Sbjct: 586 VTYDPE------KVKKLIDYVVNVL--GFEIKIDKIYRRVFFTEAKKRYVGL----LEDG 633
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
++ +I G + VR DW +LA E V +L +D+ ++ I + +KK+R
Sbjct: 634 RI----DIVGFEAVRGDWCELAKEVQSTVAEIVLKTG-----KIDEAIRYIRDVIKKLR- 683
Query: 779 DLDNGFVPLTLLEITKQLTK 798
G +P+ L I K L+K
Sbjct: 684 ---EGEIPVEKLIIWKTLSK 700
>gi|403171115|ref|XP_003330341.2| DNA polymerase delta subunit 1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169039|gb|EFP85922.2| DNA polymerase delta subunit 1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1055
Score = 139 bits (350), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 131/409 (32%), Positives = 199/409 (48%), Gaps = 69/409 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+ + L +E SY++P K
Sbjct: 485 KLMCFVNYTEMA-RVTGVPFNYL---LSRGQQIKVVSQLYRRANEHSYLVP-----ALKH 535
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
EG + Y G V+EP +GFYD I +DF SLYPSI+ +N+C+TT+
Sbjct: 536 EGSD------------EPYDGATVMEPVRGFYDVPIATLDFASLYPSIMMAHNLCYTTLT 583
Query: 537 ---PVRML---QDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
V++L QD D IT +Y + G+L ++ L+ +R++ +A +K L +
Sbjct: 584 DAKTVKLLELRQDEDFIITPNGDYFVKASKRKGLLAIVLEDLLSARKRARAELK---LET 640
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL 646
D D RQ ALK++ANS+YG G + P++ VTA GRE++ TK+ VE L
Sbjct: 641 DPFKRAVLDGRQLALKISANSVYGFTGATVGKLPCLPISMSVTAFGREMIKITKNEVE-L 699
Query: 647 NY----------EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY 696
Y EVIYGDTDS+M+ F K K ++L+ + VY
Sbjct: 700 KYTKANGYDDDAEVIYGDTDSVMVK---------FGCAEAADFVSAKFQKPIKLEFEKVY 750
Query: 697 KYMLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L +KL + KM + KG++ VRRD L S + + ++L
Sbjct: 751 FPYLLISKKRYAGLHWTKLEKHDKM----DAKGIETVRRDNCPLVSTVIETCLKKML--- 803
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ + K++ +DL + L+ L ITK L KA K
Sbjct: 804 ------IDRDVKGAEAYTKQVISDLLQNRIDLSQLVITKALAKADYAAK 846
>gi|324120694|dbj|BAJ78738.1| DNA polymerase delta catalytic subunit [Inocellia japonica]
Length = 1097
Score = 139 bits (350), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 199/408 (48%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL EK +V+P
Sbjct: 519 KLMCMINYMEMA----RVTGVPLSSLLTRGQQIKVVSQLLRKAREKDFVIP--------- 565
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
A G G ++ Y G V+EPK+G+YD I +DF+SLYPSI+ +N+C+T++
Sbjct: 566 -------AYSG-GTQEDQYEGATVIEPKRGYYDDPIATLDFSSLYPSIMMAHNLCYTSLL 617
Query: 537 -P-----VRMLQDS-DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LS 587
P + + D T + + V G+LP ++ L+ +R++ KA +K+ L
Sbjct: 618 QPGVKEKLGLTPDQYSRTPAGNFFVKQSVRKGLLPEILENLLAARKKAKADLKKETDPLK 677
Query: 588 SDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
+L D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 678 CKVL---DGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQRY 734
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ VIYGDTDS+MI V + +G + +K K ++L+ + VY
Sbjct: 735 CVANGYKHDAVVIYGDTDSVMIKFGVKTLEDAMALGKEAAEYVSSKFIKPIKLEFEKVYY 794
Query: 698 YMLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ + KM C KG++ VRRD L + + ++L
Sbjct: 795 PYLLISKKRYAGLYFTRTDTYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLL---- 846
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
D D L E+ K++ +DL + ++ L +TK+LTK+ K
Sbjct: 847 -IDRDPDGAL----EYAKQVISDLLCNRIDISQLVVTKELTKSDYAAK 889
>gi|84043446|ref|XP_951513.1| DNA polymerase delta catalytic subunit [Trypanosoma brucei TREU927]
gi|33348312|gb|AAQ15638.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|62359086|gb|AAX79533.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma
brucei]
gi|261326367|emb|CBH09326.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma
brucei gambiense DAL972]
Length = 1026
Score = 139 bits (350), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 124/409 (30%), Positives = 207/409 (50%), Gaps = 51/409 (12%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ +K++ L V+ +++ V G + L G+ + +LL +++V+P
Sbjct: 436 LKDAYLPVKLLERLMVVVNNVEMARVTGVPIGWLLERGQQIKVFSMLLRKARARNFVVP- 494
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
T E + R+ Y G V+EPKKG Y + I+ +DF SLYPSII +
Sbjct: 495 ------------TVETTGAEQRR---YEGATVIEPKKGHYIEPIVTLDFASLYPSIIIAH 539
Query: 530 NICFTTI-PVRMLQDSDITTLCEYLPEH-----QVDTGILPSEIKKLVESRRQVKALMKQ 583
N+C++T+ P + + + + EH +V G+LP ++ L+ +RRQ +ALMK
Sbjct: 540 NLCYSTLLPGHEVNNYESGMKEDTPTEHKFIRKEVFPGVLPEVLRDLLAARRQARALMK- 598
Query: 584 PNLSSDLLMQYDI---RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
++S D L +Y + RQ ALK++ANS+YG G R L+A VT+ GR ++ TK
Sbjct: 599 -DVSQDSL-EYKVLNGRQLALKVSANSVYGFTGAQVGRLPCLELSATVTSYGRRMIEETK 656
Query: 641 SLVEN--LNYEVIYGDTDSLMISCNVNDYDS-------VFKIGNQIKSECNKLYKQ-LEL 690
VE + EVIYGDTDS+MI C +N +S G + + + + L
Sbjct: 657 QFVEKKYVGAEVIYGDTDSVMIRCVINADESDTNKLQQAMDFGKEAAEAVSSTFPDPIRL 716
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
+ + VY LL+ KK+YA L +N + KG++ VRRD L + V+++
Sbjct: 717 EFEKVYYPFLLMNKKRYAGL---LWTNTVRYDKLDAKGIETVRRDSCPLVASVISGVLNR 773
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+L ++S +++ E +K DL + + ++ L ITK +K+
Sbjct: 774 MLIQRS---------VESAVEFVKGTIRDLLHNRLDISQLVITKSFSKS 813
>gi|118400060|ref|XP_001032353.1| DNA polymerase family B containing protein [Tetrahymena
thermophila]
gi|89286694|gb|EAR84690.1| DNA polymerase family B containing protein [Tetrahymena thermophila
SB210]
Length = 1124
Score = 139 bits (350), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 172/333 (51%), Gaps = 32/333 (9%)
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRM 540
E ++G+G K + G VL+PKKGFYDK I +DF SLYPSI+ +N+C++T+ V M
Sbjct: 566 ERSQGQGDK---FEGAFVLQPKKGFYDKPIATLDFASLYPSIMMAHNLCYSTLISKNVAM 622
Query: 541 LQDSDITTLC---EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPNLSSDLLMQYDI 596
+ D TL +Y + V GILP +K L+ +R++ K L K+ + ++ D
Sbjct: 623 SMNKDDYTLTPHGDYFAKPHVRQGILPDILKDLLAARKKAKNELAKETDPLRKAVL--DG 680
Query: 597 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-------LNY- 648
RQ ALK++ANS+YG G + +++ VT+ GR+++ T+ V N NY
Sbjct: 681 RQLALKISANSVYGFTGAQVGQLPCLEISSSVTSFGRQMIEATRDFVLNHYNKANGYNYD 740
Query: 649 -EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKKK 705
+VIYGDTDS+M+ + + K G + +K ++L+ + VY LL+ KK
Sbjct: 741 SDVIYGDTDSVMVKFGCDSIEEAMKYGKEAAEMISKKLFINPIKLEFEKVYYPYLLISKK 800
Query: 706 KYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
+YA +K I + KG++ VRRD Q E + IL E D
Sbjct: 801 RYAGCFYTKPDKYDKI---DTKGMENVRRDNCQFIREMMNTCLRYILVEHK------QDG 851
Query: 766 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+Q + +K +DL V ++ L ITK LTK
Sbjct: 852 VQRSIQFIKGCISDLYQNKVDISKLVITKSLTK 884
>gi|324120724|dbj|BAJ78753.1| DNA polymerase delta catalytic subunit [Zorotypus sp. 154-1]
Length = 999
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 202/411 (49%), Gaps = 64/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL E+ Y++P
Sbjct: 423 KLMCIINYMEMA----RVTGVSLSSLLTRGQQIKVVSQLLRKAREQGYLMP--------- 469
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
A +G G+ + + G V+EPKKG+Y I+ +DF+SLYPSI+ +N+C+TT+
Sbjct: 470 -------AYQGVGQDEQ-FEGATVIEPKKGYYADPIVTLDFSSLYPSIMMAHNLCYTTLL 521
Query: 537 ------PVRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ +D + T + V G+LP ++ L+ +R++ KA +K +D
Sbjct: 522 QGNAKDKFGLTEDQYLKTPTANFFVRKSVRKGLLPEILENLLAARKRAKADLKN---ETD 578
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-NL 646
+ D RQ ALK++ANS+YG G + +++ VTA GR ++ TK VE +
Sbjct: 579 PFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTAFGRTMIEQTKQEVEQHY 638
Query: 647 NYE--------VIYGDTDSLMISCNVNDYDSVFKIGNQ-IKSECNKLYKQLELDIDGVYK 697
N E VIYGDTDS+MI V + ++G Q + +K ++L+ + VY
Sbjct: 639 NIENGFSHDACVIYGDTDSVMIKFGVKKLEEAMELGRQSAEFVSSKFINPIKLEFEKVYF 698
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---D 753
LL+ KK+YA L ++ KM C KG++ VRRD S L + + ++L D
Sbjct: 699 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNSPLVANMINTCLQKLLIDRD 754
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
DY+ K++ +DL + ++ L ITK+LTK+ GK
Sbjct: 755 PNGAVDYA------------KEVISDLLCNRIDISQLVITKELTKSDYAGK 793
>gi|50543418|ref|XP_499875.1| YALI0A08426p [Yarrowia lipolytica]
gi|49645740|emb|CAG83802.1| YALI0A08426p [Yarrowia lipolytica CLIB122]
Length = 1072
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 176/333 (52%), Gaps = 36/333 (10%)
Query: 487 KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT---------IP 537
K G + Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT +
Sbjct: 540 KQDGSSEEQYEGATVIEPERGYYDIPIATLDFSSLYPSIMMAHNLCYTTLLDKATVERLD 599
Query: 538 VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYD 595
+++ +D T + + GILP +++L+ +R++ KA +K+ +D D
Sbjct: 600 LKLDEDYHRTPNGDLFVNQKTRKGILPIVLEELLSARKKAKADLKK---ETDPFKKAVLD 656
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL--------- 646
RQ ALK++ANS+YG G + +++ VTA GR+++ TK VEN
Sbjct: 657 GRQLALKISANSVYGFTGATVGKLPCLAISSSVTAYGRDMIQFTKEQVENKYTKANGYPE 716
Query: 647 NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKK 705
N +VIYGDTDS+M+ V D + +G + ++++ K ++L+ + VY LL+ KK
Sbjct: 717 NAKVIYGDTDSVMVKFGVPDLKTAMDMGLEAAEYVSEMFLKPIKLEFEKVYFPYLLINKK 776
Query: 706 KYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
+YA L +N + + KG++ VRRD +L + V+ +IL +D
Sbjct: 777 RYAGL---YWTNPEKFDKMDTKGIETVRRDNCRLVQNVIETVLRKIL---------MDRD 824
Query: 766 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
++ ++K + +L V L+ L ITKQL++
Sbjct: 825 VEGAQAYVKTMVANLLQNKVDLSQLVITKQLSR 857
>gi|432868483|ref|XP_004071560.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Oryzias
latipes]
Length = 1107
Score = 139 bits (349), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 124/406 (30%), Positives = 200/406 (49%), Gaps = 60/406 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL +++ V+P K
Sbjct: 531 KLMCVINYMEMA----RVTGVPLSYLLSRGQQIKVVSQLLRQAMKQNLVMP-----VVKT 581
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
EG E Y+G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 582 EGGED-------------YTGATVIEPEKGYYSVPITTLDFSSLYPSIMMAHNLCYTTLL 628
Query: 537 ---PVRMLQ----DSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
V LQ D T + + V G+LP ++ L+ +R++ KA +K+ +D
Sbjct: 629 QKGSVERLQLSSEDFIKTPTGDQFVKSSVRKGLLPEILENLLSARKRAKAELKK---ETD 685
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
+ D RQ ALK++ANS+YG G + ++ VT GR+++ TK LVE+
Sbjct: 686 PFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIERTKQLVESKY 745
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK-QLELDIDGVYK 697
+ +VIYGDTDS+M+ V +IG + + + ++L+ + VY
Sbjct: 746 TISNGYQADAKVIYGDTDSVMVKLGVATVKEAMEIGREAAEWVSSHFTPPIKLEFEKVYY 805
Query: 698 YMLLLKKKKYAAL--SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L S S ++ KM C KG++ VRRD L + + +IL
Sbjct: 806 PYLLINKKRYAGLYFSSSADTHDKMDC----KGIETVRRDNCPLVANLINTCLQKIL--- 858
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+D Q +H K++ +DL + ++ L ITK+LT+ +
Sbjct: 859 ------IDRDPQGAVDHAKEVISDLLCNRIDISQLVITKELTRTAQ 898
>gi|405951999|gb|EKC19859.1| DNA polymerase delta catalytic subunit [Crassostrea gigas]
Length = 1090
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 126/403 (31%), Positives = 193/403 (47%), Gaps = 59/403 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L G+ + LL E+ VLP +
Sbjct: 511 KLMCVINYMEMA----RVTGVPLPYLLSRGQQVKVVSQLLRKAKEQDLVLPTHKV----- 561
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
ETG+ Y G V+EP KGFYD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 562 ---ETGDE----------YEGATVIEPVKGFYDSPIATLDFSSLYPSIMMAHNLCYTTLL 608
Query: 538 VR-------MLQDSDITTLC-EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ + D I T Y + Q G+LP ++ L+ +R++ KA +K+ +D
Sbjct: 609 SQHSIQKEGLTPDQYIKTPSGNYFIKTQHRKGLLPEILEHLLSARKKAKADLKK---ETD 665
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE--- 644
+ D RQ ALK++ANS+YG G + ++ VTA GR ++ TK+ VE
Sbjct: 666 PFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTAFGRMMIEQTKTYVEEHY 725
Query: 645 ------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYK 697
+ +VIYGDTDS+M V K+G + + K K ++L+ + VY
Sbjct: 726 TIANGYQHDAKVIYGDTDSVMCKFGVGTVAEAMKLGQEAADLISEKFIKPIKLEFEKVYF 785
Query: 698 YMLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L + + KM C KG++ VRRD S L + + IL
Sbjct: 786 PYLLINKKRYAGLYWTNPEKHDKMDC----KGIETVRRDNSPLVANLINTCLQLIL---- 837
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
++ Q E+ K+ +DL + ++ L ITK+LTK
Sbjct: 838 -----INRDPQGAVEYAKQAISDLLCNRIDISQLVITKELTKT 875
>gi|328720536|ref|XP_001948892.2| PREDICTED: DNA polymerase delta catalytic subunit-like
[Acyrthosiphon pisum]
Length = 1093
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/400 (30%), Positives = 189/400 (47%), Gaps = 54/400 (13%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L GG+ + LL EK+Y++P
Sbjct: 513 KLMCLINYMEMA----RVTGVPLGSLLTGGQQAKVVSQLLRLAQEKNYIMP--------- 559
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT--- 534
G + + G V+EP KG+Y I +DF SLYPSI+ +N+C+T
Sbjct: 560 --------TMAGGMQDEQFEGATVIEPIKGYYADPIATLDFTSLYPSIMMAHNLCYTTLL 611
Query: 535 ---TIPVRMLQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
TI + L ++D T Y + + G+LP ++ L+ +R++ K +K
Sbjct: 612 SQKTINLLNLSENDYTKTPSGSYFLSNSIRKGLLPEILENLLSARKKAKTDLKSETDPFK 671
Query: 590 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---- 645
+ + D RQ ALK++ANS+YG G + ++ VT+ GR ++ TK VE
Sbjct: 672 IKV-LDGRQLALKISANSVYGFTGAQVGKLPCLEISTSVTSYGRTMIERTKQEVEQKYCI 730
Query: 646 -LNYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYM 699
YE VIYGDTDS+M+ V + ++G + K K ++LD + VY
Sbjct: 731 ANGYEHDAVVIYGDTDSVMVKFGVKSIEKAMELGREAAEYVTTKFIKPIKLDFEKVYFPY 790
Query: 700 LLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
LL+ KK+YA L ++ KM C KG++ VRRD S L S + ++L
Sbjct: 791 LLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNSPLVSNMINTCLQKLL------ 840
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+D + K++ +DL + ++ L ITK+LTK
Sbjct: 841 ---IDRDPDGAVAYAKEVISDLLCNRIDISQLVITKELTK 877
>gi|308504541|ref|XP_003114454.1| hypothetical protein CRE_27041 [Caenorhabditis remanei]
gi|308261839|gb|EFP05792.1| hypothetical protein CRE_27041 [Caenorhabditis remanei]
Length = 1080
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 178/339 (52%), Gaps = 45/339 (13%)
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRM 540
E N G G Y G V++P +GFY++ I +DF SLYPSI+ +N+C+TT+ P +
Sbjct: 543 EVNSGDGE---GYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGV 599
Query: 541 LQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIR 597
+ I T +Y G+LP ++ L+ +R++ K MK D M Y+ R
Sbjct: 600 ENEDYIRTPSGQYFATKSKRHGLLPEILEDLLVARKRAKNFMKN---EKDEFKRMVYNGR 656
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL----------- 646
Q ALK++ANS+YG G + ++ VTA GR+++ TKS VE +
Sbjct: 657 QLALKISANSVYGFTGAVVGKLPCLEISQSVTAFGRKMIDMTKSEVERIYKKGALEGKCP 716
Query: 647 -NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKK 704
+ +VIYGDTDS+M+ V + +IG + E +K++ ++L+ + VY LL+ K
Sbjct: 717 ADAKVIYGDTDSVMVKFGVENVAQAMEIGLEAAKEVSKIFTPPIKLEFEKVYFPYLLINK 776
Query: 705 KKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DEQSYTDY 760
K+YA L +K + KM C KG++ VRRD L ++ + ++L D+QS D+
Sbjct: 777 KRYAGLYFTKPEVHDKMDC----KGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDF 832
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ K+ +DL + ++LL I+K+LTK+
Sbjct: 833 A------------KRTISDLLCNKIDISLLIISKELTKS 859
>gi|324120686|dbj|BAJ78734.1| DNA polymerase delta catalytic subunit [Pedetontus unimaculatus]
Length = 1035
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 123/413 (29%), Positives = 205/413 (49%), Gaps = 68/413 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L G+ + LL EK +V+P Q
Sbjct: 458 KLMCIINYMEMA----RVTGVSLPSLLTRGQQIKVVSQLLRKAREKDFVIPTYQ------ 507
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G G + Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT
Sbjct: 508 ----------GTGSDEQ-YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTT-- 554
Query: 538 VRMLQDSDITTLCEYLPEHQVDT-------------GILPSEIKKLVESRRQVKALMKQP 584
+LQ + L + P+ ++T G+LP ++ L+ +R++ K +K+
Sbjct: 555 --LLQPGWVNKL-QLTPDRYIETPAGAMFVKASVRKGLLPEILESLLAARKKAKEDLKKE 611
Query: 585 N--LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSL 642
L +L D RQ ALK++ANS+YG G + ++ VTA GR+++ TK
Sbjct: 612 TDPLRCKVL---DGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAFGRQMIEFTKQQ 668
Query: 643 VEN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ-IKSECNKLYKQLELDI 692
VEN + +VIYGDTDS+M+ V+ +G + + +K K ++L+
Sbjct: 669 VENKFTVENGYSHDAKVIYGDTDSVMVRFGVSTVGEAMVLGKEGAEYVSSKFIKPIKLEF 728
Query: 693 DGVYKYMLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+ VY LL+ KK+YA L ++ + KM C KG++ VRRD + + ++
Sbjct: 729 EKVYFPYLLINKKRYAGLYFTRPEVHDKMDC----KGIETVRRDNCPFVANIMNMCLQKL 784
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
L E++ + ++D ++K++ +DL V ++ L ITK+LTK+ K
Sbjct: 785 LIERN-PNGAVD--------YVKQVISDLLCNRVDISQLVITKELTKSDYAAK 828
>gi|157875046|ref|XP_001685930.1| putative DNA polymerase delta catalytic subunit [Leishmania major
strain Friedlin]
gi|68129003|emb|CAJ06437.1| putative DNA polymerase delta catalytic subunit [Leishmania major
strain Friedlin]
Length = 1032
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 205/402 (50%), Gaps = 56/402 (13%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
++MC +N +++ V G + L G+ + +LL +K V+P +Y
Sbjct: 454 RLMCIVN----NVEMARVTGVPVGWLLERGQQIKVFSMLLRKAQKKKLVVPTVEY----- 504
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
TG +++G Y G V++P KGFY+ + +DF SLYPSII +N+C++T+
Sbjct: 505 ----TGGSDRG-------YEGATVIDPIKGFYNCPVATLDFASLYPSIIIAHNLCYSTLV 553
Query: 538 ----VRMLQDS--DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL 591
R+ + D + + + +V GILP ++ L+ +R+ +A+MK ++S
Sbjct: 554 RPADARLYPEDALDRSPTSDVFVKKEVFPGILPEVLQDLLAARKHARAMMKDVPMNS--- 610
Query: 592 MQYDI---RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-- 646
++Y + RQ ALK++ANS+YG G + ++A VTA GR+++ TK+LVE+L
Sbjct: 611 LEYKVLNGRQLALKVSANSVYGFTGAQVGKLPCLEISASVTAYGRQMIDRTKNLVEDLYP 670
Query: 647 NYEVIYGDTDSLMISCNVNDYDS---------VFKIGNQIKSECNKLYKQLELDIDGVYK 697
V+YGDTDS+M+ C ++ S F I K N L K ++L+ + VY
Sbjct: 671 GARVLYGDTDSVMVKCVTDEKASDKERLQEAMDFGIEAAEKVSSNFL-KPIKLEFEKVYF 729
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
LL+ KK+YA L +N + KG++ VRRD L + V+++IL +S
Sbjct: 730 PYLLMNKKRYAGL---LWTNTDRFDKLDAKGIETVRRDNCPLVARMVSGVLNRILIHRS- 785
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+++ E +K +DL + ++ L ITK +KA
Sbjct: 786 --------VESAVEFVKGTISDLLLNRLDISNLVITKAFSKA 819
>gi|341904443|gb|EGT60276.1| hypothetical protein CAEBREN_32385 [Caenorhabditis brenneri]
Length = 1042
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 110/339 (32%), Positives = 178/339 (52%), Gaps = 45/339 (13%)
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRML 541
EAN G G Y G V+EP +GFY++ I +DF SLYPSI+ +N+C+TT+ + +
Sbjct: 574 EANSGDGE---GYEGATVIEPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKAPQGV 630
Query: 542 QDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIR 597
++ D T +Y G+LP ++ ++ +R++ K MK D M Y+ R
Sbjct: 631 ENEDYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKN---EKDEFKRMVYNGR 687
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL----------- 646
Q ALK++ANS+YG G + ++ VTA GR+++ TKS VE +
Sbjct: 688 QLALKISANSVYGFTGATVGKLPCLEISQSVTAFGRKMIDMTKSEVERIYKKGALDGKCP 747
Query: 647 -NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKK 704
+ +VIYGDTDS+M+ V +IG E +K++ ++L+ + VY LL+ K
Sbjct: 748 ADAKVIYGDTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINK 807
Query: 705 KKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DEQSYTDY 760
K+YA L +K + KM C KG++ VRRD L ++ + ++L D+QS D+
Sbjct: 808 KRYAGLYFTKPDVHDKMDC----KGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDF 863
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ K+ +DL + ++LL I+K+LTK+
Sbjct: 864 A------------KRTISDLLCNKIDISLLIISKELTKS 890
>gi|380015553|ref|XP_003691765.1| PREDICTED: transmembrane protein 147-like isoform 2 [Apis florea]
Length = 219
Score = 138 bits (348), Expect = 2e-29, Method: Composition-based stats.
Identities = 68/97 (70%), Positives = 76/97 (78%), Gaps = 9/97 (9%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
ML LATF PT DN + +K SIDL D VG LVL++IPGKGHAK+LTAGVGWA
Sbjct: 50 MLALATFFPTADN---------EFLKSSIDLADLVGILLVLNNIPGKGHAKVLTAGVGWA 100
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
GAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNI L+
Sbjct: 101 GAEVLLTRFLLLWVGARGAEFDWKYIQKSLESNINLV 137
>gi|328777653|ref|XP_392351.3| PREDICTED: transmembrane protein 147-like isoform 2 [Apis
mellifera]
Length = 219
Score = 138 bits (348), Expect = 2e-29, Method: Composition-based stats.
Identities = 68/97 (70%), Positives = 76/97 (78%), Gaps = 9/97 (9%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
ML LATF PT DN + +K SIDL D VG LVL++IPGKGHAK+LTAGVGWA
Sbjct: 50 MLALATFFPTADN---------EFLKSSIDLADLVGILLVLNNIPGKGHAKVLTAGVGWA 100
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
GAEV+LTRFL LWVGARGAEFDWKYIQ SL+SNI L+
Sbjct: 101 GAEVLLTRFLLLWVGARGAEFDWKYIQKSLESNINLV 137
>gi|390339587|ref|XP_003725042.1| PREDICTED: DNA polymerase delta catalytic subunit-like
[Strongylocentrotus purpuratus]
Length = 1696
Score = 138 bits (348), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 131/418 (31%), Positives = 206/418 (49%), Gaps = 57/418 (13%)
Query: 403 VEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHE 462
V +K ML + K+M +N + +A V G L+ L G+ + LL E
Sbjct: 1104 VYCLKDAMLPLRLLDKLMSVINYMEMA----RVTGVPLTYLLSRGQQIKVVSQLLRKAKE 1159
Query: 463 KSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
+ V+P + ETG+ + GG VL+P +G+YD I +DF+SLY
Sbjct: 1160 QDLVMPAHKV--------ETGDD----------FVGGYVLDPIRGYYDCPIATLDFSSLY 1201
Query: 523 PSIIQEYNICFTTI--PV---RMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
PSI+Q +N+C+TT+ P + D I T Y + + GILP ++ L+ +R++
Sbjct: 1202 PSIMQAHNLCYTTLLSPSMKENLAPDQYIKTPTGNYFVKKSIRRGILPEILEDLLTARKR 1261
Query: 577 VKALMKQPNLSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
KA +K+ +D L + D RQ ALK++ANS+YG G + ++ TA GR
Sbjct: 1262 AKADLKK---ETDPLRKRVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSTTAFGRM 1318
Query: 635 ILLNTKSLVEN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKL 684
++ T+ LVE +VIYGDTDS+M+ V ++G + + ++
Sbjct: 1319 MIDKTRQLVETRYTVENGYKTTSKVIYGDTDSVMVKFGVKTVAESMELGKEAAAWISDEF 1378
Query: 685 YKQLELDIDGVYKYMLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQLASEA 743
++L+ + VY LL+ KK+YA L +K + KM C KG++ VRRD L S
Sbjct: 1379 PPPIKLEFEKVYFPYLLINKKRYAGLYFTKPDTYDKMDC----KGIETVRRDSCPLVSNV 1434
Query: 744 GKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
V+ +IL E+ T +LD H K+ +DL + ++ L ITK+LTK E
Sbjct: 1435 LNNVLQKILIERDPTG-ALD--------HTKQTISDLLCNRIDISQLVITKELTKTGE 1483
>gi|150403298|ref|YP_001330592.1| DNA polymerase Pol2 [Methanococcus maripaludis C7]
gi|150034328|gb|ABR66441.1| DNA polymerase Pol2 [Methanococcus maripaludis C7]
Length = 780
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 195/399 (48%), Gaps = 44/399 (11%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL I + V L S+ E+LLL + K + P++ GK ++
Sbjct: 335 LPLEIMFSRVVNQSLYDINRMSSSQMVEYLLLKNSYNKGVIAPNRPSGKEYQK------- 387
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R +++Y GG V EP KG ++ I+ MDF SLYPSII +N+ TI + +
Sbjct: 388 -----RIRSSYEGGYVKEPLKGIHED-IVSMDFLSLYPSIIMSHNLSPETIDCTCCDNEE 441
Query: 546 ITTLCEYLPEHQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY---DIRQK 599
E + H+ GI+P + L++ R+ VK ++K+ + + +Y D Q+
Sbjct: 442 ----NEEILGHKFCKKTIGIIPKTLMDLIDRRKSVKKILKEKAENKEFDEEYQILDYEQR 497
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
++K+ ANS YG L FP +R++++ A + T GR+ + T EN ++VIY DTD
Sbjct: 498 SIKVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEEAENFGFKVIYADTDGFY 557
Query: 660 ISC----NVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKL 715
+ + + K +K+ +KL ++EL+ +G +K + + KKKYA +
Sbjct: 558 SKWADGKKLTRDELLEKTKTFLKNINDKLPGEMELEFEGYFKRGIFVTKKKYALID---- 613
Query: 716 SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKK 775
N K+ +KG++VVRRDWS ++ K V++ +L E S ++N + ++
Sbjct: 614 ENEKI----TVKGLEVVRRDWSNVSKNTQKSVLNALLKEGS---------VENAKKVIQD 660
Query: 776 IRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSR 814
+L NG V L I QLTK E K + +++
Sbjct: 661 TIKELKNGNVKKEDLLIHTQLTKRIEDYKTTSPHVEVAK 699
>gi|448099944|ref|XP_004199250.1| Piso0_002676 [Millerozyma farinosa CBS 7064]
gi|359380672|emb|CCE82913.1| Piso0_002676 [Millerozyma farinosa CBS 7064]
Length = 1079
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 129/423 (30%), Positives = 209/423 (49%), Gaps = 58/423 (13%)
Query: 403 VEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHE 462
V +K L S + K+MC +N +A V G S L G+ + L E
Sbjct: 487 VYCLKDAYLPSRLMEKLMCLVNYTEMA----RVTGVPFSYLLARGQQIKVISQLFRKCLE 542
Query: 463 KSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
+ V+P+ K EG T E Y G +V+EP +G+YD I +DF+SLY
Sbjct: 543 DNIVIPNM-----KSEG--TNED----------YEGAIVIEPVRGYYDVPIATLDFSSLY 585
Query: 523 PSIIQEYNICFTTI----PVRMLQ----DSDITTLCEYLPEHQVDTGILPSEIKKLVESR 574
PSI+ +N+C+TT+ + L D +T +Y GILP+ +K+L+ +R
Sbjct: 586 PSIMMAHNLCYTTLLNKQTINALNLKEDDYTLTPNGDYFIRDHKRKGILPTILKELLTAR 645
Query: 575 RQVKALMKQPN--LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
++ +A +K+ D+L + RQ ALK++ANS+YG G + +++ VTA G
Sbjct: 646 KKARADLKKETDPFKKDVL---NGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAFG 702
Query: 633 REILLNTKSLVEN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNK 683
RE++ TK+ V+ + +VIYGDTDS+M+ ND ++ K G + S +
Sbjct: 703 REMIEKTKNEVQEHYSIKNGFPFDSQVIYGDTDSVMVRFGFNDLETCMKYGEEAASYVST 762
Query: 684 LYKQ-LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASE 742
+K ++L+ + VY LL+ KK+YA L ++ + + KG++ VRRD +L
Sbjct: 763 KFKDPIKLEFEKVYFPYLLINKKRYAGL---YWTSPQKFDKMDTKGIETVRRDNCRLVQN 819
Query: 743 AGKFVISQILDEQSYTDYSLDDRLQNIHEH-MKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
VI+++L +Y L++R EH +K+ DL + L+ L ITK +K
Sbjct: 820 ----VITKVL------EYILEERDVAKAEHYVKQTIADLLQNRIDLSQLVITKAYSKHDY 869
Query: 802 GGK 804
K
Sbjct: 870 AAK 872
>gi|324120732|dbj|BAJ78757.1| DNA polymerase delta catalytic subunit [Thrips palmi]
Length = 1091
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 195/412 (47%), Gaps = 66/412 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L G+ + LL E Y++P Q
Sbjct: 512 KLMCIINYMEMA----RVTGVTLGSLLTRGQQIKVVSQLLRKAKEHDYIMPTYQ------ 561
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
TG ++ Y G V+EPK+G+Y I +DF+SLYPSI+ +N+C+TT
Sbjct: 562 ---STGGDDQ--------YEGATVIEPKRGYYGDPISTLDFSSLYPSIMMAHNLCYTT-- 608
Query: 538 VRMLQDSD------------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
+LQ ++ T Y + V G+LP ++ L+ +R++ KA +K+
Sbjct: 609 --LLQANNREKLGLTPDQYSHTPANNYFVKASVRKGLLPEILESLLNARKKAKADLKK-- 664
Query: 586 LSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
+D Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK+ V
Sbjct: 665 -ETDPFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKTEV 723
Query: 644 EN-----LNYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDID 693
E YE VIYGDTDS+M+ V + ++G + +K K ++L+ +
Sbjct: 724 ETKYRIENGYEHDAVVIYGDTDSVMVKFGVKTLEEAMRLGQEAAEYVTSKFIKPIKLEFE 783
Query: 694 GVYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
VY LL+ KK+YA L + KM C KG++ VRRD L + + +IL
Sbjct: 784 KVYFPYLLINKKRYAGLYFTSADKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKIL 839
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + K++ +DL + ++ L ITK+LTK+ K
Sbjct: 840 ---------IDRNPDGAVAYAKQVISDLLCNRIDISNLVITKELTKSDYAAK 882
>gi|324120688|dbj|BAJ78735.1| DNA polymerase delta catalytic subunit [Petrobiellus takunagae]
Length = 1005
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 201/407 (49%), Gaps = 68/407 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L G+ + LL EK +V+P Q
Sbjct: 428 KLMCIINYMEMA----RVTGVSLPSLLTRGQQIKVVSQLLRKAREKDFVIPTYQ------ 477
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G G + Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT
Sbjct: 478 ----------GTGSDEQ-YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTT-- 524
Query: 538 VRMLQDSDITTLCEYLPEHQVDT-------------GILPSEIKKLVESRRQVKALMKQP 584
+LQ + L P+ V+T G+LP ++ L+ +R++ K +K+
Sbjct: 525 --LLQPGWVNKL-GLTPDLYVETPAGSMFVKSTVRKGLLPEILESLLAARKKAKEDLKKE 581
Query: 585 N--LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSL 642
L +L D RQ ALK++ANS+YG G + ++ VTA GR+++ TK
Sbjct: 582 TDPLRCKVL---DGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAFGRQMIEFTKQQ 638
Query: 643 VEN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ-IKSECNKLYKQLELDI 692
VEN N +VIYGDTDS+M+ V+ +G + +K K ++L+
Sbjct: 639 VENKFCVENGYSHNAKVIYGDTDSVMVRFGVSTVAEAMVLGKEGADYVSSKFIKPIKLEF 698
Query: 693 DGVYKYMLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+ VY LL+ KK+YA L ++ + KM C KG++ VRRD + + ++
Sbjct: 699 EKVYFPYLLINKKRYAGLYFTRPDVHDKMDC----KGLETVRRDNCTFVANIMSMCLQKL 754
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
L E++ T ++D ++K++ +DL V ++ L ITK+LTK
Sbjct: 755 LIERNPTG-AID--------YVKQVISDLLCNRVDISQLVITKELTK 792
>gi|388852680|emb|CCF53598.1| probable DNA polymerase delta catalytic subunit [Ustilago hordei]
Length = 1057
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 126/426 (29%), Positives = 205/426 (48%), Gaps = 63/426 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A ++T V N L L G+ + L +E Y++P
Sbjct: 481 KLMCFVNYIEMA-RVTGVPFNYL---LSRGQQIKVVSQLFRKANEDKYLVP--------- 527
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-- 535
A KG+G + Y G VLEPK G+YD+ I +DF SLYPS++ +N+C+TT
Sbjct: 528 -------AYKGEGTEDQ-YEGATVLEPKAGYYDRPIATLDFASLYPSVMMAHNLCYTTLL 579
Query: 536 -------IPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ ++ D IT Y ++ G+LP+ ++ L+ +R++ KA +K+ +
Sbjct: 580 DKKTIDRLELKENDDFVITPNNNYFATKKLRKGLLPTVLENLLAARKRAKADLKK---ET 636
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D D RQ ALK++ANS+YG G + ++ TA GR+++ TK+ VE
Sbjct: 637 DPFRRAVLDGRQLALKISANSVYGFTGATIGKLPCLEISMSTTAYGRQMIEQTKTYVEKH 696
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVY 696
+ EV+YGDTDS+MI D K+G + +K + ++L+ + VY
Sbjct: 697 YTIANGYEHDAEVVYGDTDSVMIKFGPPDLAKAMKLGAEAAGLVSKTFIDPIKLEFEKVY 756
Query: 697 KYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L ++ KM + KG++ VRRD +L + ++L
Sbjct: 757 FPYLLISKKRYAGLYWTRPEKYDKM----DTKGIETVRRDNCRLVQTVIDTCLRKML--- 809
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRN 815
+D ++ E+ K I +DL V ++ L ITK L K+ K Q +
Sbjct: 810 ------IDRDVKGAEEYAKNIISDLLQNKVDMSQLVITKALAKSDYAAK----QAHVELA 859
Query: 816 RRGRRR 821
R R+R
Sbjct: 860 ERMRKR 865
>gi|401427880|ref|XP_003878423.1| putative DNA polymerase delta catalytic subunit [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322494671|emb|CBZ29973.1| putative DNA polymerase delta catalytic subunit [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1032
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 124/403 (30%), Positives = 205/403 (50%), Gaps = 58/403 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
++MC +N +++ V G + L G+ + +LL +K V+P +Y
Sbjct: 454 RLMCIVN----NVEMARVTGVPVGWLLERGQQIKVFSMLLRKAQKKKLVVPTVEY----- 504
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
TG +++G Y G V++P KGFY+ + +DF SLYPSII +N+C++T+
Sbjct: 505 ----TGGSDRG-------YEGATVIDPIKGFYNCPVATLDFASLYPSIIIAHNLCYSTL- 552
Query: 538 VRML------QDS-DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 590
VR +DS D + + + +V GILP ++ L+ +R+ +A+MK ++S
Sbjct: 553 VRPADARLYPEDSLDRSPTSDIFVKKEVFPGILPEVLQDLLAARKHARAMMKDVPMNS-- 610
Query: 591 LMQYDI---RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
++Y + RQ ALK++ANS+YG G + ++A VTA GR+++ TK+LVE L
Sbjct: 611 -LEYKVLNGRQLALKVSANSVYGFTGAQVGKLPCLEISASVTAYGRQMIDRTKNLVEELY 669
Query: 647 -NYEVIYGDTDSLMISCNVNDYDS---------VFKIGNQIKSECNKLYKQLELDIDGVY 696
V+YGDTDS+M+ C N+ S F I K N L ++L+ + VY
Sbjct: 670 PGARVLYGDTDSVMVKCVTNEKASDKERLQAAMDFGIEAAEKVSSNFL-NPIKLEFEKVY 728
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +N + KG++ VRRD L + V+++IL +S
Sbjct: 729 FPYLLMNKKRYAGL---LWTNTDRFDKLDAKGIETVRRDNCPLVARMVSGVLNRILIHRS 785
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+++ E +K +DL + ++ L ITK +KA
Sbjct: 786 ---------VESAVEFVKGTISDLLLNRLDISNLVITKAFSKA 819
>gi|324120728|dbj|BAJ78755.1| DNA polymerase delta catalytic subunit [Blattella nipponica]
Length = 1039
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 195/411 (47%), Gaps = 64/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL EK Y++P
Sbjct: 462 KLMCIINYMEMA----RVTGVSLSSLLTRGQQIKVVSQLLRKAREKGYLMP--------- 508
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
G G ++ Y G V+EPKKG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 509 --------AYGGGVQEEQYEGATVIEPKKGYYSDPIATLDFSSLYPSIMMAHNLCYTTLL 560
Query: 537 -PVR-----MLQDSDITTLCE-YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
P + D + T + + V G+LP ++ L+ +R++ K +K D
Sbjct: 561 NPASRDNLGLTPDKYVKTPAQNFFVNKSVRKGLLPEILENLLSARKKAKTDLKN---EKD 617
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE--- 644
Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 618 PFRQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRAMIEQTKQEVEQHY 677
Query: 645 NL------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYK 697
N+ + +VIYGDTDS+M+ V + ++G + + + K ++L+ + VY
Sbjct: 678 NMANGYQHDAQVIYGDTDSVMVKFGVQTLEEAMELGREAANYVSEKFPPPIKLEFEKVYF 737
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---D 753
LL+ KK+YA L ++ KM C KG++ VRRD S L + + +IL D
Sbjct: 738 PYLLINKKRYAGLYFTRPDKYDKMDC----KGIETVRRDNSPLVANMMNTCLQKILIDRD 793
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
DY+ K++ DL + ++ L ITK+L K+ K
Sbjct: 794 PTGAVDYA------------KQVIADLLCNRIDISQLVITKELAKSDYAAK 832
>gi|240147810|gb|ACS45141.1| POL1-like protein [Glomus etunicatum]
Length = 117
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/117 (58%), Positives = 85/117 (72%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S++ Q DIRQKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 2 RKYVKGLMADPKASAEY-AQLDIRQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 60
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 61 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKSLKELVNKRYKSLEI 117
>gi|353237606|emb|CCA69575.1| probable DNA polymerase delta catalytic subunit [Piriformospora
indica DSM 11827]
Length = 1069
Score = 138 bits (347), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 206/410 (50%), Gaps = 60/410 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T + N L L G+S + L + + Y++P K
Sbjct: 496 KLMCFINYTEMA-RVTGIPFNYL---LSRGQSIKVVSQLYRRANSEGYLIP-----ATKS 546
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y G V+EP +GFY K I +DF+SLYPSI+ +N+C+TT+
Sbjct: 547 EGGED------------QYEGATVIEPSRGFYKKPIATLDFSSLYPSIMMAHNLCYTTLL 594
Query: 538 -------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ +++D D T ++ + G+LP+ ++ L+ +R++ KA +K+ +
Sbjct: 595 NKDTIDRLGLIRDVDYIQTPNKDFFATTKRRKGLLPTVLEDLIAARKRAKADLKK---ET 651
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN- 645
D D RQ ALK++ANS+YG G + +++ VTA GR+++ TK++VE+
Sbjct: 652 DPFKRAVLDGRQLALKISANSVYGFTGATIGKLPCLEISSSVTAYGRQMIERTKTVVESQ 711
Query: 646 --------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC--NKLYKQLELDIDGV 695
+ VIYGDTDS+M+ D ++ + G + + + K + L+ + V
Sbjct: 712 FSIANGRKWDARVIYGDTDSVMVEFGCEDLETAMECGREAAAFVTETEFVKPINLEFEKV 771
Query: 696 YKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
Y LL+ KK+YA L +K KM + KG++ VRRD +L S + + ++L
Sbjct: 772 YFPYLLISKKRYAGLYWTKPEKYDKM----DAKGIETVRRDNCRLVSTVIETCLQKLL-- 825
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ ++K++ +DL + ++ L ITK L+K GK
Sbjct: 826 -------IDKDVEGAESYVKRMISDLLQNKIDMSQLVITKALSKETYDGK 868
>gi|378726376|gb|EHY52835.1| DNA polymerase delta subunit 1 [Exophiala dermatitidis NIH/UT8656]
Length = 1107
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 203/406 (50%), Gaps = 63/406 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P+++ K+
Sbjct: 523 KLMCLVNYTEMA-RVTGVPFNYLL-----SRGQQVKFISQLFRKALEQQLVIPNERSEKS 576
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
++ Y G V+EP +G+YD I +DF SLYPSIIQ +N+C+TT
Sbjct: 577 DEQ-----------------YEGATVIEPIRGYYDVPIATLDFASLYPSIIQAHNLCYTT 619
Query: 536 IPVRML---------QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQ 583
+ + + +D +T + +V G+L +++L+ +R++ K A+ K
Sbjct: 620 LLTKQIIEKHNMKKDEDYILTPNGDLFATAKVRKGLLTQILEELLGARKRAKRELAVEKD 679
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
P + L + RQ ALK++ANS+YG G + P+A+ TA GR+++ TK V
Sbjct: 680 PFKKAVL----NGRQLALKISANSVYGLTGATVGKLPCLPIASSTTAYGRQMIEKTKHEV 735
Query: 644 E---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDID 693
E + + +VIYGDTDS+M+ D V ++G + +K K ++L+ +
Sbjct: 736 EQKYTIANGYSHDAQVIYGDTDSVMVKFGEKDLRKVMELGQEAADFVSSKFIKPIKLEFE 795
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +N + KG++ VRRD +L + V+ +IL
Sbjct: 796 KVYFPYLLINKKRYAGLY---WTNPDKYDKMDTKGIETVRRDNCRLVQVVIETVLRKIL- 851
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+D L +++K+ +L V L++L ITK L+K+
Sbjct: 852 --------IDRDLDGAQDYVKETIANLLQNKVDLSMLVITKALSKS 889
>gi|452845568|gb|EME47501.1| hypothetical protein DOTSEDRAFT_50888 [Dothistroma septosporum
NZE10]
Length = 1104
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 124/415 (29%), Positives = 206/415 (49%), Gaps = 59/415 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+ + L E+ V+PD K
Sbjct: 521 KLMCLVNYTEMA-RVTGVPFNFL---LSKGQQIKFISQLFRKALEQQLVVPDL-----KS 571
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
EG + Y G V+EP +G+YD + +DF SLYPSIIQ +N+C+TT+
Sbjct: 572 EGSD------------EQYEGATVIEPTRGYYDVPVATLDFASLYPSIIQAHNLCYTTLL 619
Query: 537 ------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+++ +D D +T + +V G+L +++L+ +R++ K K+ + +
Sbjct: 620 NKNAVEKMQLKKDDDYIVTPNGDLFATTKVRKGLLSQILEELLGARKRAK---KELAVET 676
Query: 589 DLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D + + RQ ALK++ANS+YG G + +A+ TA GR+++ TK VE
Sbjct: 677 DPFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLAIASSTTAYGRQMIEKTKEEVEGK 736
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVY 696
+ + +VIYGDTDS+M+ ND ++G + +K K ++L+ + VY
Sbjct: 737 YTVANGYSHDAQVIYGDTDSVMVKFGPNDLAKAMELGQEAAGYVSSKFIKPIKLEFEKVY 796
Query: 697 KYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L +K N KM + KG++ VRRD +L Q + E
Sbjct: 797 FPYLLINKKRYAGLYWTKPDNYDKM----DTKGIETVRRDNCRLV---------QNVIET 843
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQI 810
S +D +Q +++K+ ++L V ++ L ITK LTK+ K T++
Sbjct: 844 SLKMLLIDQDVQGAQDYVKETISELLQNRVDMSNLVITKALTKSDYANKQAHTEL 898
>gi|113931510|ref|NP_001039204.1| DNA-directed DNA polymerase delta 1 [Xenopus (Silurana) tropicalis]
gi|89268922|emb|CAJ83173.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa
[Xenopus (Silurana) tropicalis]
Length = 1109
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 194/410 (47%), Gaps = 68/410 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL ++ V+P K
Sbjct: 530 KLMCVINYMEMA----RVTGVPLSYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVKS 580
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT
Sbjct: 581 EGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTT-- 625
Query: 538 VRMLQDSDI------------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
+LQ I T + + + G+LP ++ L+ +R++ KA +K+
Sbjct: 626 --LLQSGSIDKYGLSPEDFIKTPTGDCFVKASIRKGLLPEILENLLCARKRAKAELKK-- 681
Query: 586 LSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
+D Q D RQ ALK++ANS+YG G + ++ VT GR+++ TK LV
Sbjct: 682 -ETDPFKQKVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLV 740
Query: 644 EN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDID 693
E+ + +VIYGDTDS+M V +IG + + + ++L+ +
Sbjct: 741 ESKYTLDNGYKADAKVIYGDTDSVMCKLGVQTVVEAMEIGREAAEWVSSHFTPPIKLEFE 800
Query: 694 GVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
VY LL+ KK+YA L S +N KM C KG++ VRRD L + + +I
Sbjct: 801 KVYFPYLLINKKRYAGLYFSSSANTHDKMDC----KGIETVRRDNCPLVANLINTCLQKI 856
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +D EH K + +DL + ++ L ITK+LT+ +
Sbjct: 857 L---------IDRDPMGAVEHAKDVISDLLCNRIDISQLVITKELTRTAD 897
>gi|324120742|dbj|BAJ78762.1| DNA polymerase delta catalytic subunit [Uroleucon
nigrotuberculatum]
Length = 1093
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 190/402 (47%), Gaps = 58/402 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L GG+ + LL EK+Y++P
Sbjct: 513 KLMCLINYMEMA----RVTGVPLGSLLTGGQQAKVVSQLLRLAQEKNYIMP--------- 559
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT--- 534
G + + G V+EP KG+Y I +DF SLYPSI+ +N+C+T
Sbjct: 560 --------TMAGGMQDEQFEGATVIEPIKGYYADPIATLDFTSLYPSIMMAHNLCYTTLL 611
Query: 535 ---TIPVRMLQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
TI + L ++D T Y + + G+LP ++ L+ +R++ K +K +D
Sbjct: 612 SQKTINLLNLSENDYTKTPSGSYFLSNSIRKGLLPEILENLLSARKKAKTDLKS---ETD 668
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
+ D RQ ALK++ANS+YG G + ++ VT+ GR ++ TK VE
Sbjct: 669 PFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISTSVTSYGRTMIERTKQEVEQKY 728
Query: 646 ---LNYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
YE VIYGDTDS+M+ V + ++G + K K ++LD + VY
Sbjct: 729 CIANGYEHDAVVIYGDTDSVMVKFGVKTIEKAMELGREAAEYVTTKFIKPIKLDFEKVYF 788
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD S L S + ++L
Sbjct: 789 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNSPLVSNMINTCLQKLL---- 840
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+D + K++ +DL + ++ L ITK+LTK
Sbjct: 841 -----IDRDPDGAVAYAKEVISDLLCNRIDISQLVITKELTK 877
>gi|45357943|ref|NP_987500.1| DNA polymerase B protein [Methanococcus maripaludis S2]
gi|44920700|emb|CAF29936.1| DNA polymerase family B [Methanococcus maripaludis S2]
Length = 784
Score = 137 bits (346), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 195/400 (48%), Gaps = 42/400 (10%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL I + V L S+ E+LLL ++ + P++ GK ++
Sbjct: 335 LPLEIMFSRVVNQSLYDINRMSSSQMVEYLLLKNSYKMGVIAPNRPSGKEYQK------- 387
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R +++Y GG V EP KG ++ I+ MDF SLYPSII +N+ TI D +
Sbjct: 388 -----RIRSSYEGGYVKEPLKGIHED-IVSMDFLSLYPSIIMSHNLSPETIDCTCCSDEE 441
Query: 546 ITTLCEYLPEHQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY---DIRQK 599
E L H+ GI+P + L+ R++VK ++++ + +Y D Q+
Sbjct: 442 NGENEEILG-HKFCKKSIGIIPKTLMDLINRRKKVKKVLREKAEKGEFDEEYQILDYEQR 500
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
++K+ ANS YG L FP +R++++ A + T GR+ + T EN ++VIY DTD
Sbjct: 501 SIKVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEEAENFGFKVIYADTDGFY 560
Query: 660 ISC-----NVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK 714
++ Y+ + K +K+ N L ++EL+ +G +K + + KKKYA +
Sbjct: 561 SKWADDKEKLSKYELLEKTREFLKNINNTLPGEMELEFEGYFKRGIFVTKKKYALID--- 617
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
N K+ +KG++VVRRDWS ++ K V++ +L E S ++N + ++
Sbjct: 618 -ENEKIT----VKGLEVVRRDWSNVSKNTQKNVLNALLKEGS---------VENAKKVIQ 663
Query: 775 KIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSR 814
+L +G V L I QLTK E K + +++
Sbjct: 664 DTIKELKDGKVNNEDLLIHTQLTKRIEDYKTTAPHVEVAK 703
>gi|348533053|ref|XP_003454020.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Oreochromis
niloticus]
Length = 1105
Score = 137 bits (346), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 124/411 (30%), Positives = 198/411 (48%), Gaps = 70/411 (17%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L+ L G+ + LL ++ V+P K
Sbjct: 529 KLMCVINYMEMA----RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVKT 579
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y+G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT
Sbjct: 580 EGGED-------------YTGATVIEPEKGYYSLPIATLDFSSLYPSIMMAHNLCYTT-- 624
Query: 538 VRMLQDSDITTLCEYLPEHQVDT-------------GILPSEIKKLVESRRQVKALMKQP 584
+LQ + L PE + T G+LP ++ L+ +R++ KA +K+
Sbjct: 625 --LLQKGSVDKL-GLAPEDFIKTPTGDLFVKSSLRKGLLPEILENLLSARKRAKAELKK- 680
Query: 585 NLSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSL 642
+D + D RQ ALK++ANS+YG G + ++ VT GR+++ TK L
Sbjct: 681 --ETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQL 738
Query: 643 VEN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK-QLELDI 692
VE+ + +VIYGDTDS+M+ V IG + + + ++L+
Sbjct: 739 VESKYTLSNGYQADAKVIYGDTDSVMVKLGVATVKEAMDIGREAAEWVSSHFTPPIKLEF 798
Query: 693 DGVYKYMLLLKKKKYAAL--SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
+ VY LL+ KK+YA L S S ++ KM C KG++ VRRD L + + +
Sbjct: 799 EKVYYPYLLINKKRYAGLYFSSSASTHDKMDC----KGIETVRRDNCPLVANLINTCLQK 854
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
IL +D Q EH K++ +DL + ++ L ITK+LT+ +
Sbjct: 855 IL---------IDRDPQGAVEHAKEVISDLLCNRIDISQLVITKELTRTAQ 896
>gi|159481277|ref|XP_001698708.1| DNA polymerase alpha subunit one [Chlamydomonas reinhardtii]
gi|158273602|gb|EDO99390.1| DNA polymerase alpha subunit one [Chlamydomonas reinhardtii]
Length = 1114
Score = 137 bits (346), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 89/135 (65%), Gaps = 10/135 (7%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++ + + IM L+VLPL Q++ + G + SRTL G R+ R E LLLH F
Sbjct: 514 GVLRLLRHGESDAWLALGIMFHLSVLPLTKQLSALSGQLWSRTLAGQRAGRIEMLLLHEF 573
Query: 461 HEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
H + +++PDKQ K+K A G G K Y+GGLVLEPKKG YDK +I++DFNS
Sbjct: 574 HSRKFIVPDKQSYKSKA-------APSGNGPK---YAGGLVLEPKKGLYDKIVIILDFNS 623
Query: 521 LYPSIIQEYNICFTT 535
LYPSIIQEYNICFTT
Sbjct: 624 LYPSIIQEYNICFTT 638
Score = 136 bits (342), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 86/218 (39%), Positives = 125/218 (57%), Gaps = 32/218 (14%)
Query: 585 NLSSDLLMQYDIR-QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
+L ++ +Y+I A+KLTANSMYGCLGF SRF+AQPLA L+TA+GR IL +T L
Sbjct: 623 SLYPSIIQEYNICFTTAIKLTANSMYGCLGFGASRFYAQPLAELITAQGRSILSSTVDL- 681
Query: 644 ENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK 703
+G +IK E NK YK LE+++DGV+K +LLLK
Sbjct: 682 -------------------------EARALGARIKREVNKRYKLLEIELDGVFKSILLLK 716
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
KKKYAA+ + G++ E KG+D+VRRDW L+ + G F ++ +L + +
Sbjct: 717 KKKYAAVKLEPDGQGRLAEVMEQKGLDIVRRDWCPLSKDVGNFALAAVLSGRGR-----E 771
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ + IH H++++ + G +P+ ITKQLTK PE
Sbjct: 772 EVVGEIHAHLRQVAERVRAGQIPMGKFIITKQLTKRPE 809
Score = 92.0 bits (227), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 139/297 (46%), Gaps = 40/297 (13%)
Query: 105 AFQKLKDLKGQGVKHK--YEFTADENVYEEVSEKEYTERVLKRQE-DDWIDDDGGDGYVE 161
A ++L+ + G+K YE + VY+ V E++Y E V KR++ D++ DD G GY +
Sbjct: 20 ALEQLRAARDGGLKRALAYEVKEEAAVYDVVDEQQYAEIVKKRRDAGDFVVDDDGAGYHD 79
Query: 162 DGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFE 221
G DD ++ P + + D + + K LP + LDA+E
Sbjct: 80 IGE---DDYFQERPVEDDGGDDGEDDTKQAGKKRKKGVLPF------------YLLDAYE 124
Query: 222 DIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQ---V 278
+ +PG V LFGK+ E SC V V+ + R + ++PR E + + +A V
Sbjct: 125 NPDARPGEVVLFGKI-EAEGGRWQSCAVAVRGLQRTLIVVPRREVFEDGDGAIVAMHAAV 183
Query: 279 YSEFDQIATQYKILDFKSRK----IE--KKYAFNLPGVPDLSEY-LEVRYSAKCPAL--P 329
++ + K+L S +E K YAF VP ++ ++VRY P L P
Sbjct: 184 KADPARKPELMKMLQMWSAAGGVFLEGIKFYAFENRDVPHGEQWVIKVRYPGHLPVLQPP 243
Query: 330 SD--LSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF--PEAEKFPSRISWCKYEV 382
+ SG T+ +FG S LER+IKGP W+ P ++ ++ +WCK EV
Sbjct: 244 ASGCFSGKTYCAIFGANQS-----TLERRIKGPGWMGICSPTRVEYGNQTTWCKVEV 295
>gi|12275267|emb|CAC22338.1| DNA polymerase [Leishmania turanica]
gi|12275278|emb|CAC22332.1| DNA polymerase [Leishmania gerbilli]
Length = 287
Score = 137 bits (346), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/173 (42%), Positives = 109/173 (63%), Gaps = 13/173 (7%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y ++ K
Sbjct: 115 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQDFKR 173
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E + G++KA Y GG+VL+PK G Y + +L+DFNSLYPS+IQE++ICFTT+
Sbjct: 174 GHDDEEED---GKRKAKYQGGMVLDPKCGLYSDYTLLLDFNSLYPSLIQEFSICFTTVDR 230
Query: 539 RMLQDSDI----TTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMK 582
+ D+ +C L + +LP IK LV+SRR+VK LMK
Sbjct: 231 ENRSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMK 283
>gi|407396863|gb|EKF27570.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma cruzi
marinkellei]
Length = 1029
Score = 137 bits (346), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 174/336 (51%), Gaps = 42/336 (12%)
Query: 487 KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---------P 537
G G + Y G V+EP KGFY+ I+ +DF SLYPSII +N+C++T+ P
Sbjct: 500 SGGGGDQRGYEGATVIEPLKGFYNCPIVTLDFASLYPSIIIAHNLCYSTLVRPSDIARYP 559
Query: 538 VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI- 596
ML T + + ++ GILP ++ L+ +R++ K+LMK + S ++Y +
Sbjct: 560 AEMLSR---TPTGDTFVKKELFPGILPEVLQDLLAARKRAKSLMKDVPMES---LEYKVL 613
Query: 597 --RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL--NYEVIY 652
RQ ALK++ANS+YG G + +++ VTA GR ++ TKSLVE+L +V+Y
Sbjct: 614 NGRQLALKISANSVYGFTGAQIGKLPCLEVSSSVTAYGRLMIDQTKSLVESLYPGVKVVY 673
Query: 653 GDTDSLMISCNVN---------DYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK 703
GDTDS+MI C + +Y F G + + ++L+ + VY LL+
Sbjct: 674 GDTDSVMIKCVTDEKGTEKERLEYAMTFGKGAA-EEVSSHFLNPIKLEFEKVYFPYLLMN 732
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
KK+YA L +N + + KG++ VRRD L + V+++IL ++S
Sbjct: 733 KKRYAGL---LWTNTERYDKLDAKGIETVRRDNCPLVASVISGVLNRILIQRS------- 782
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + E +K DL + ++ L ITK +KA
Sbjct: 783 --VDSAVEFVKGTIRDLLLNRLDISHLVITKTFSKA 816
>gi|402588589|gb|EJW82522.1| DNA polymerase [Wuchereria bancrofti]
Length = 638
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 168/326 (51%), Gaps = 37/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSD--ITT 548
Y G V++P +GFY+ I +DF SLYPSI+ +N+C+TT+ L DSD +T
Sbjct: 144 YEGATVIDPIRGFYNTPIATLDFASLYPSIMIAHNLCYTTLIRGSNATHNLSDSDFEVTP 203
Query: 549 LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTAN 606
+ + G+LP ++ L+ +R+Q K +K D M + RQ ALK++AN
Sbjct: 204 SNNRFVKSNIRRGLLPQVLEDLLNARKQAKNDLKN---EKDPFRRMVLNGRQLALKISAN 260
Query: 607 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL------------NYEVIYGD 654
S+YG G + ++ VTA GR+++ TKS VE + N +VIYGD
Sbjct: 261 SVYGFTGASVGKLPCLEISQSVTAYGRQMIDLTKSAVEEIYKEGYLDGKCPCNAQVIYGD 320
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ V D + ++G +E + K ++L+ + VY LL+ KK+YA L +
Sbjct: 321 TDSVMVKFGVKDVKAAMELGLHAATEVSKKFIPPIKLEFEKVYSPFLLINKKRYAGLYFT 380
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ I + KG++ VRRD L S+ + ++L E T + EH
Sbjct: 381 RPEKHDKI---DCKGLETVRRDNCPLVSKVLSTCLEKMLLEGDAT---------SALEHA 428
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
KK+ +DL + ++ L ITK+LT++
Sbjct: 429 KKVISDLLCNRIDISELIITKELTRS 454
>gi|194368602|pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography
Length = 773
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 170/346 (49%), Gaps = 42/346 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q++ + G L E+ LL +E++ + P N
Sbjct: 317 KVTYELGKEFFPMEAQLSRLVGQSLWDVSRSSTGNLVEWFLLRKAYERNELAP------N 370
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K + E R++ +Y+GG V EP++G ++ I+ +DF SLYPSII +N+ T
Sbjct: 371 KPDERELA-------RRRESYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSS 588
+ ++ D+ C+ P G +PS + L+E R++VK MK +
Sbjct: 423 LNREGCEEYDVAPQVGHKFCKDFP------GFIPSLLGDLLEERQKVKKKMKATIDPIEK 476
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT-KSLVENLN 647
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GR+ + T + + E
Sbjct: 477 KLL---DYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++V+Y DTD + D ++V K + N KL LEL+ +G YK + KKK
Sbjct: 534 FKVLYADTDGFFATIPGADAETVKKKAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + K+ +G+++VRRDWS++A E V+ IL
Sbjct: 594 YAVID----EEDKITT----RGLEIVRRDWSEIAKETQARVLEAIL 631
>gi|134046285|ref|YP_001097770.1| replicative DNA polymerase I [Methanococcus maripaludis C5]
gi|132663910|gb|ABO35556.1| replicative DNA polymerase I [Methanococcus maripaludis C5]
Length = 780
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/342 (30%), Positives = 173/342 (50%), Gaps = 37/342 (10%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL I + V L S+ E+LLL + K + P++ GK ++
Sbjct: 335 LPLEIMFSRVVNQSLYDINRMSSSQMVEYLLLKNSYNKGVIAPNRPSGKEYQK------- 387
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R +++Y GG V EP KG ++ I+ MDF SLYPSII +N+ TI D +
Sbjct: 388 -----RIRSSYEGGYVKEPIKGIHED-IVSMDFLSLYPSIIMSHNLSPETIDCDCCNDEE 441
Query: 546 ITTLCEYLPEHQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY---DIRQK 599
E + H+ + GI+P + L++ R+ VK ++++ + +Y D Q+
Sbjct: 442 ----NEEILGHKFCKKNIGIIPKTLMDLIDRRKSVKKILREKGEKGEFDEEYQILDYEQR 497
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
++K+ ANS YG L FP +R++++ A + T GR+ + T EN ++VIY DTD
Sbjct: 498 SIKVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEEAENFGFKVIYADTDGFY 557
Query: 660 ISCN-----VNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK 714
ND + + K +K+ +KL ++EL+ +G +K + + KKKYA +
Sbjct: 558 SKWANGEKLTND-ELLEKTKIFLKNINDKLPGEMELEFEGYFKRGIFVTKKKYALID--- 613
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
N K+ IKG++VVRRDWS ++ K V++ +L E S
Sbjct: 614 -ENEKI----TIKGLEVVRRDWSNVSKNTQKSVLNALLKEGS 650
>gi|194368604|pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography. V93q Polymerase Variant
Length = 773
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 170/346 (49%), Gaps = 42/346 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q++ + G L E+ LL +E++ + P N
Sbjct: 317 KVTYELGKEFFPMEAQLSRLVGQSLWDVSRSSTGNLVEWFLLRKAYERNELAP------N 370
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K + E R++ +Y+GG V EP++G ++ I+ +DF SLYPSII +N+ T
Sbjct: 371 KPDERELA-------RRRESYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSS 588
+ ++ D+ C+ P G +PS + L+E R++VK MK +
Sbjct: 423 LNREGCEEYDVAPQVGHKFCKDFP------GFIPSLLGDLLEERQKVKKKMKATIDPIEK 476
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT-KSLVENLN 647
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GR+ + T + + E
Sbjct: 477 KLL---DYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++V+Y DTD + D ++V K + N KL LEL+ +G YK + KKK
Sbjct: 534 FKVLYADTDGFFATIPGADAETVKKKAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + K+ +G+++VRRDWS++A E V+ IL
Sbjct: 594 YAVID----EEDKITT----RGLEIVRRDWSEIAKETQARVLEAIL 631
>gi|47219672|emb|CAG02717.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1008
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/404 (29%), Positives = 195/404 (48%), Gaps = 56/404 (13%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L+ L G+ + LL ++ V+P K
Sbjct: 432 KLMCVINYMEMA----RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVKT 482
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y+G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 483 EGGED-------------YTGATVIEPEKGYYSIPIATLDFSSLYPSIMMAHNLCYTTLL 529
Query: 538 VRMLQD------SDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ QD D T + + V G+LP ++ L+ +R++ KA +K+ +D
Sbjct: 530 QKGAQDKYSLSREDFIKTPTGDLFVKSSVRKGLLPEILENLLSARKRAKAELKK---ETD 586
Query: 590 LL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
D RQ ALK++ANS+YG G + ++ VT GR+++ TK LVE+
Sbjct: 587 PFKRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLVESKY 646
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYK 697
+ +VIYGDTDS+M+ V IG + + + ++L+ + VY
Sbjct: 647 TISNGYQADAKVIYGDTDSVMVKLGVATVKEAMSIGKEAAEWVSSHFIMPIKLEFEKVYY 706
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
LL+ KK+YA L S SN + + KG++ VRRD L + + +IL
Sbjct: 707 PYLLINKKRYAGLYFS--SNAETHDKMDCKGIETVRRDNCPLVANLINTCLQKIL----- 759
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+D Q +H K++ +DL + ++ L ITK+LT+ +
Sbjct: 760 ----IDRDPQGAVDHAKEVISDLLCNRIDISQLVITKELTRTAQ 799
>gi|380019903|ref|XP_003693840.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Apis
florea]
Length = 1105
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 196/408 (48%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + +++ V G +S L G+ + LL EK Y++P
Sbjct: 526 KLMCIF----IYMEMARVTGVSISSLLTRGQQIKVVSQLLRKTREKDYLMP--------- 572
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
++G+ + + G V+EPK+G+Y+ I +DF+SLYPSII +N+C+TT+
Sbjct: 573 -------VHRGQASDEQ-FEGATVIEPKRGYYNDPIATLDFSSLYPSIIMAHNLCYTTLL 624
Query: 537 -----PVRMLQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+Q +IT + + GILP ++ L+ +R+ KA +K+ +D
Sbjct: 625 KYDKQTKNNIQSDNITITPNDSKFIKANIRKGILPEILENLLSARKAAKAELKK---ETD 681
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK VE
Sbjct: 682 PLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRTMIERTKQEVEEQY 741
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
N V+YGDTDS+MI V + ++G + +K K ++L+ + VY
Sbjct: 742 CISKGYKNNAVVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEFEKVYF 801
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L
Sbjct: 802 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLL---- 853
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + + K+I +DL + ++ L ITK+LTK K
Sbjct: 854 -----IDRNPNDAMNYAKQIISDLLCNRIDISQLVITKELTKTDYAAK 896
>gi|66511388|ref|XP_623795.1| PREDICTED: DNA polymerase delta catalytic subunit [Apis mellifera]
Length = 1105
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 198/408 (48%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + +++ V G +S L G+ + LL EK Y++P + + +
Sbjct: 526 KLMCIF----IYMEMARVTGVSISSLLTRGQQIKVVSQLLRKTREKDYLMPVHRVQASDE 581
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
+ E G V+EPK+G+Y+ I +DF+SLYPSII +N+C+TT+
Sbjct: 582 QFE-----------------GATVIEPKRGYYNDPIATLDFSSLYPSIIMAHNLCYTTLI 624
Query: 537 -----PVRMLQDSDITTLCEYLPEHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSD 589
+Q +IT +V+ GILP ++ L+ +R+ KA +K+ +D
Sbjct: 625 KYDKQAKNNIQSDNITITPNDSKFVKVNIRKGILPEILENLLSARKAAKAELKK---ETD 681
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK VE
Sbjct: 682 SLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRNMIEQTKQEVEEQY 741
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
N V+YGDTDS+MI V + ++G + +K K ++L+ + VY
Sbjct: 742 CISKGYKNNAMVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEFEKVYF 801
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L +++
Sbjct: 802 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLLIDRN 857
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + K+I +DL + ++ L ITK+LTK K
Sbjct: 858 PSD---------AMNYAKQIISDLLCNRIDISQLVITKELTKTDYAAK 896
>gi|6015025|sp|P56689.1|DPOL_THEGO RecName: Full=DNA polymerase; AltName: Full=TO POL
gi|4699806|pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 170/346 (49%), Gaps = 42/346 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q++ + G L E+ LL +E++ + P N
Sbjct: 317 KVTYELGKEFFPMEAQLSRLVGQSLWDVSRSSTGNLVEWFLLRKAYERNELAP------N 370
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K + E R++ +Y+GG V EP++G ++ I+ +DF SLYPSII +N+ T
Sbjct: 371 KPDERELA-------RRRESYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSS 588
+ ++ D+ C+ P G +PS + L+E R++VK MK +
Sbjct: 423 LNREGCEEYDVAPQVGHKFCKDFP------GFIPSLLGDLLEERQKVKKKMKATIDPIEK 476
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT-KSLVENLN 647
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GR+ + T + + E
Sbjct: 477 KLL---DYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++V+Y DTD + D ++V K + N KL LEL+ +G YK + KKK
Sbjct: 534 FKVLYADTDGFFATIPGADAETVKKKAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + K+ +G+++VRRDWS++A E V+ IL
Sbjct: 594 YAVID----EEDKITT----RGLEIVRRDWSEIAKETQARVLEAIL 631
>gi|301015727|pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus
Gorgonarius In Complex With Hypoxanthine-Containing Dna
Length = 773
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 170/346 (49%), Gaps = 42/346 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q++ + G L E+ LL +E++ + P N
Sbjct: 317 KVTYELGKEFFPMEAQLSRLVGQSLWDVSRSSTGNLVEWFLLRKAYERNELAP------N 370
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K + E R++ +Y+GG V EP++G ++ I+ +DF SLYPSII +N+ T
Sbjct: 371 KPDERELA-------RRRESYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSS 588
+ ++ D+ C+ P G +PS + L+E R++VK MK +
Sbjct: 423 LNREGCEEYDVAPQVGHKFCKDFP------GFIPSLLGDLLEERQKVKKKMKATIDPIEK 476
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT-KSLVENLN 647
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GR+ + T + + E
Sbjct: 477 KLL---DYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++V+Y DTD + D ++V K + N KL LEL+ +G YK + KKK
Sbjct: 534 FKVLYADTDGFFATIPGADAETVKKKAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + K+ +G+++VRRDWS++A E V+ IL
Sbjct: 594 YAVID----EEDKITT----RGLEIVRRDWSEIAKETQARVLEAIL 631
>gi|398021685|ref|XP_003864005.1| DNA polymerase delta catalytic subunit, putative [Leishmania
donovani]
gi|322502239|emb|CBZ37322.1| DNA polymerase delta catalytic subunit, putative [Leishmania
donovani]
Length = 1032
Score = 137 bits (345), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 204/402 (50%), Gaps = 56/402 (13%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
++MC +N +++ V G + L G+ + +LL +K V+P +Y
Sbjct: 454 RLMCIVN----NVEMARVTGVPVGWLLERGQQIKVFSMLLRKAQKKKLVVPTVEY----- 504
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
TG +++G Y G V++P KGFY+ + +DF SLYPSII +N+C++T+
Sbjct: 505 ----TGGSDRG-------YEGATVIDPIKGFYNCPVATLDFASLYPSIIIAHNLCYSTLV 553
Query: 538 ----VRMLQDS--DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL 591
R+ + D + + + +V GILP ++ L+ +R+ +A+MK ++S
Sbjct: 554 RPADARLYPEDALDRSPTSDVFVKKEVFPGILPEVLQDLLAARKHARAMMKDVPMNS--- 610
Query: 592 MQYDI---RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-- 646
++Y + RQ ALK++ANS+YG G + ++A VTA GR+++ TK+LVE L
Sbjct: 611 LEYKVLNGRQLALKVSANSVYGFTGAQVGKLPCLEISASVTAYGRQMIDRTKNLVEELYP 670
Query: 647 NYEVIYGDTDSLMISCNVNDYDS---------VFKIGNQIKSECNKLYKQLELDIDGVYK 697
V+YGDTDS+M+ C ++ S F I K N L K ++L+ + VY
Sbjct: 671 GARVLYGDTDSVMVKCVTDEKSSDKERLQAAMDFGIEAAEKVSSNFL-KPIKLEFEKVYF 729
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
LL+ KK+YA L + + + KG++ VRRD L + V+++IL +S
Sbjct: 730 PYLLMNKKRYAGLLWTSTDRFDKL---DAKGIETVRRDNCPLVARMVSGVLNRILIHRS- 785
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+++ E +K +DL + ++ L ITK +KA
Sbjct: 786 --------VESAVEFVKGTISDLLLNRLDISNLVITKAFSKA 819
>gi|146097987|ref|XP_001468284.1| putative DNA polymerase delta catalytic subunit [Leishmania
infantum JPCM5]
gi|134072651|emb|CAM71367.1| putative DNA polymerase delta catalytic subunit [Leishmania
infantum JPCM5]
Length = 1032
Score = 137 bits (345), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 120/402 (29%), Positives = 204/402 (50%), Gaps = 56/402 (13%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
++MC +N +++ V G + L G+ + +LL +K V+P +Y
Sbjct: 454 RLMCIVN----NVEMARVTGVPVGWLLERGQQIKVFSMLLRKAQKKKLVVPTVEY----- 504
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
TG +++G Y G V++P KGFY+ + +DF SLYPSII +N+C++T+
Sbjct: 505 ----TGGSDRG-------YEGATVIDPIKGFYNCPVATLDFASLYPSIIIAHNLCYSTLV 553
Query: 538 ----VRMLQDS--DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL 591
R+ + D + + + +V GILP ++ L+ +R+ +A+MK ++S
Sbjct: 554 RPADARLYPEDALDRSPTSDVFVKKEVFPGILPEVLQDLLAARKHARAMMKDVPMNS--- 610
Query: 592 MQYDI---RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-- 646
++Y + RQ ALK++ANS+YG G + ++A VTA GR+++ TK+LVE L
Sbjct: 611 LEYKVLNGRQLALKVSANSVYGFTGAQVGKLPCLEISASVTAYGRQMIDRTKNLVEELYP 670
Query: 647 NYEVIYGDTDSLMISCNVNDYDS---------VFKIGNQIKSECNKLYKQLELDIDGVYK 697
V+YGDTDS+M+ C ++ S F I K N L K ++L+ + VY
Sbjct: 671 GARVLYGDTDSVMVKCVTDEKSSDKERLQAAMDFGIEAAEKVSSNFL-KPIKLEFEKVYF 729
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
LL+ KK+YA L + + + KG++ VRRD L + V+++IL +S
Sbjct: 730 PYLLMNKKRYAGLLWTSTDRFDKL---DAKGIETVRRDNCPLVARMVSGVLNRILIHRS- 785
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+++ E +K +DL + ++ L ITK +KA
Sbjct: 786 --------VESAVEFVKGTISDLLLNRLDISNLVITKAFSKA 819
>gi|401828411|ref|XP_003887919.1| DNA polymerase type-B delta catalytic subunit [Encephalitozoon
hellem ATCC 50504]
gi|392998927|gb|AFM98938.1| DNA polymerase type-B delta catalytic subunit [Encephalitozoon
hellem ATCC 50504]
Length = 974
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 111/323 (34%), Positives = 168/323 (52%), Gaps = 36/323 (11%)
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----RMLQDSDITTLC 550
+ GG V+EPK+GFY+K + +MDF SLYPSI+ N+C+TT+ R+L T
Sbjct: 463 TFEGGFVIEPKRGFYNKPVSVMDFTSLYPSIMISNNLCYTTLLTKEQYRVLGGIRTPT-D 521
Query: 551 EYLPEHQVDTGILPSEIKKLVESR---RQVKALMKQPNLSSDLLMQYDIRQKALKLTANS 607
Y + G+LP + L+ESR ++ K P L + L + RQ A+KL ANS
Sbjct: 522 NYFCSAERKKGLLPRILVDLLESRKKIKEELKKEKDPALKACL----NGRQLAVKLCANS 577
Query: 608 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYE----------VIYGDTDS 657
+YG G + ++ VT GRE++ TK+L+E N+ VIYGDTDS
Sbjct: 578 LYGFTGASKGKLPCFEISQSVTGFGREMINFTKNLIEE-NFSKKNGYTHDSVVIYGDTDS 636
Query: 658 LMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS 716
+MI N D VF++ +I +K + + L+ + VY LL+ KK+YA L S
Sbjct: 637 VMIDFNEEDLGRVFEMSKRISEFVTSKFVRPVSLEFEKVYYPYLLINKKRYAGLLYSNPD 696
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 776
+ I + +G++ VRRD L EA + V+ IL +++ ++ +K +
Sbjct: 697 SPSKI---DTRGIETVRRDNCGLVKEAVETVLEMILYQRN---------VEKAKRFVKDV 744
Query: 777 RTDLDNGFVPLTLLEITKQLTKA 799
DL G + L+LL I+K LTKA
Sbjct: 745 VRDLYLGKIDLSLLVISKSLTKA 767
>gi|303275346|ref|XP_003056969.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461321|gb|EEH58614.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1067
Score = 137 bits (344), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 121/392 (30%), Positives = 194/392 (49%), Gaps = 54/392 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD--KQYGKNKKEGEETGEANK 487
I++ V G LS L G+S + +L ++ ++P K+ +++EG
Sbjct: 492 IEMARVTGVPLSFLLSRGQSIKVLSQILRKARQRGLLVPHMPKKGASDQQEG-------- 543
Query: 488 GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRML----- 541
AY G VL+ K G+Y+ I +DF SLYPSI+ +N+C+ T +P M+
Sbjct: 544 -----GVAYEGATVLDAKAGYYELPIATLDFASLYPSIMMAHNLCYCTLVPQNMVSRMNP 598
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQK 599
+D + + + GILP +++L+ +R++ KA +K Q L +L D RQ
Sbjct: 599 EDVSKSPTGDVFVKSNKTKGILPEILEELLSARKRAKADLKKAQDPLEKAVL---DGRQL 655
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEV 650
ALK++ANS+YG G ++A T+ GR ++ TK LV + N +V
Sbjct: 656 ALKVSANSVYGFTGATVGALPCLEISASTTSYGRNMIDQTKELVMEKYNTKNGYSANADV 715
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAA 709
IYGDTDS+MI NV D + K+G + + + + K ++L+ + VY LL+ KK+YA
Sbjct: 716 IYGDTDSVMIKFNVTDLEEAMKLGEEAATYVSSTFIKPIKLEFEKVYWPYLLISKKRYAG 775
Query: 710 LSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DEQSYTDYSLDDRL 766
L +N K + KG++ VRRD L + + V+ +IL D DY
Sbjct: 776 L---LWTNPKKHDYMDTKGIETVRRDNCLLVRQVIETVLQKILISRDVPGAVDY------ 826
Query: 767 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+K+ +DL + L+LL ITK LT+
Sbjct: 827 ------VKRTISDLLMNRMDLSLLVITKGLTQ 852
>gi|91773640|ref|YP_566332.1| replicative DNA polymerase I [Methanococcoides burtonii DSM 6242]
gi|91712655|gb|ABE52582.1| DNA polymerase B, delta subunit with exonuclease activity
[Methanococcoides burtonii DSM 6242]
Length = 910
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 186/369 (50%), Gaps = 60/369 (16%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I ++ V G +L T+ GG++ E +LL F ++ V+ + K EET +
Sbjct: 383 IALSRVSGILLQDTVSGGQTNMVEHILLTEFGKQGRVM-------STKPDEETSSFRR-- 433
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQDSDIT 547
++ GG VLEP+KG + K +I++D+ SLYP+I+ +N+C+TT+ P + +D I
Sbjct: 434 -KQNEDLKGGAVLEPEKGLH-KNVIVLDYKSLYPTIMMAHNLCYTTVVPPGKYPEDKVIR 491
Query: 548 TLC--EYL-PEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLT 604
+ E++ PE V GI+PS ++ L++ R + K LMKQ + + + D Q ALK+
Sbjct: 492 SPSKGEFVKPE--VFKGIVPSVLESLLDKRIETKKLMKQASDEGEYQV-LDATQLALKIL 548
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN------------------- 645
NS YG G+ +R ++ +A VT+ GR + T+ +V N
Sbjct: 549 LNSFYGYSGYARARLYSLQMANSVTSIGRGNIARTQDIVCNRIGTVILRDNKAYLRDEVD 608
Query: 646 --------LNYEVIYGDTDSLMISCNVNDYDSVFK-----------IGNQIKSECN-KLY 685
+ V YGDTDS+ + C ND D F+ +G ++ S L
Sbjct: 609 ELKDDDKAVKLSVAYGDTDSVFVHCK-NDQDLEFEEGVFSLEDSALVGKKVASIVTASLP 667
Query: 686 KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGK 745
+EL+ + K +LL+ KK+YA I + +NG S ++KG++ VRRDW +L S+
Sbjct: 668 DPMELEFEATAKRVLLIAKKRYAQW-IFEPANGGWTDSIKVKGLETVRRDWCELTSKMLN 726
Query: 746 FVISQILDE 754
V+ +L E
Sbjct: 727 RVLELVLKE 735
>gi|357482861|ref|XP_003611717.1| DNA polymerase alpha catalytic subunit [Medicago truncatula]
gi|355513052|gb|AES94675.1| DNA polymerase alpha catalytic subunit [Medicago truncatula]
Length = 987
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 51/224 (22%)
Query: 381 EVQCNQMEKI-RSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNV 439
EV +++ K+ ++ + L+ L+GI ++ + +++M L+VLPL Q+TN+ GN+
Sbjct: 763 EVAPHEVPKMFQTAKSLMELVGI----EYGETDAWLSMELMFYLSVLPLTRQLTNLSGNL 818
Query: 440 LSRTLMGGRSERNEFLLLHAFHEKSYVLPDK--QYGKNKK-------EGEETG------- 483
+TL G R++R E+LLLH FH+K Y++PDK Y K K G + G
Sbjct: 819 WGKTLQGARAQRVEYLLLHEFHKKKYIVPDKFSNYAKETKLTKRRVTHGVDDGNFDDADI 878
Query: 484 ----------EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ------ 527
E++ K +K A+Y+GGLVLEPKKG YDK+I+L+DFNSLYPSIIQ
Sbjct: 879 NDANYHNDASESDHKKNKKAASYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQVDNILF 938
Query: 528 -------EYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILP 564
EYNICFTT+ R DS LP + TG+LP
Sbjct: 939 ENVLLVPEYNICFTTVE-RSSDDS-----FPRLPSSKT-TGVLP 975
Score = 108 bits (270), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 101/207 (48%), Gaps = 28/207 (13%)
Query: 214 MFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEP 272
+ LDA+E+ Y GT+YLFGKV K + SCCV+V+N+ R +Y +P T E
Sbjct: 342 FYILDAYEEYYGANMGTLYLFGKV--KTGTLYQSCCVVVKNMQRCVYAIPSHPLHSTNEM 399
Query: 273 V----------------------SIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGV 310
+ +++ +E + + F +++KYAF +
Sbjct: 400 IQLEKDVQESRISPADFRKKLQDAVSDTKNEIAKHLVDLGVSSFSMAPVKRKYAFERTDI 459
Query: 311 PDLSEYL-EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE 369
P Y+ ++ Y K ALP DL G +F + G + S LE L++RKIKGPSWL+
Sbjct: 460 PAGENYVVKINYLFKDTALPVDLKGKSFCALLGARNSALELFLIKRKIKGPSWLQVSNFS 519
Query: 370 KFPS--RISWCKYEVQCNQMEKIRSKQ 394
+ R+SWCK+EV + + IR+
Sbjct: 520 TCSASQRVSWCKFEVIVDSPKDIRASS 546
>gi|350397573|ref|XP_003484918.1| PREDICTED: DNA polymerase delta catalytic subunit-like isoform 2
[Bombus impatiens]
Length = 1104
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 199/408 (48%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + +++ V G + L G+ + LL EK Y++P
Sbjct: 525 KLMCIF----IYMEMARVTGVSICSLLTRGQQIKVVSQLLRKTREKDYLIP--------- 571
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
++G+ + + G V+EPK+G+Y I +DF+SLYPSII +N+C+TT+
Sbjct: 572 -------VHRGQASDEQ-FEGATVIEPKRGYYSDPIATLDFSSLYPSIIMAHNLCYTTLL 623
Query: 537 ----PVRMLQDSDITTLCEY---LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+++ DSD T+ + + GILP ++ L+ +R+ KA +K+ +D
Sbjct: 624 KRDTEIKLKIDSDDITVTPSDSKFVKATLRKGILPEILESLLSARKAAKAELKK---ETD 680
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK VE
Sbjct: 681 PLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLDISASVTAYGRTMIERTKQEVEEQY 740
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ V+YGDTDS+MI V + ++G + +K K ++L+ + VY
Sbjct: 741 CVSKGYKNDAVVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEFEKVYF 800
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L
Sbjct: 801 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLL---- 852
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
D + +D L + K+I +DL + ++ L +TK+LTK K
Sbjct: 853 -IDRNPNDALN----YAKQIISDLLCNRIDISQLVVTKELTKTDYAAK 895
>gi|291190618|ref|NP_001167152.1| DNA polymerase delta catalytic subunit [Salmo salar]
gi|223648376|gb|ACN10946.1| DNA polymerase delta catalytic subunit [Salmo salar]
Length = 1105
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 121/405 (29%), Positives = 196/405 (48%), Gaps = 58/405 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L+ L G+ + LL ++ V+P K
Sbjct: 529 KLMCVINYMEMA----RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQGLVMP-----VVKP 579
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y+G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 580 EGGED-------------YTGATVIEPEKGYYSVPIATLDFSSLYPSIMMAHNLCYTTLL 626
Query: 538 VR------MLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ L D T + + V G+LP ++ L+ +R++ KA +K N +
Sbjct: 627 QKGSAEKLGLNPEDFIKTPTGDLFVKSSVRKGLLPDILEDLLSARKKAKAELK--NETDP 684
Query: 590 LLMQ-YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--- 645
Q D RQ ALK++ANS+YG G + ++ VT GR+++ TK LVE+
Sbjct: 685 FKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLVESKYT 744
Query: 646 ------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK-QLELDIDGVYKY 698
+ +VIYGDTDS+M+ V+ ++G + + + ++L+ + VY
Sbjct: 745 IANGYQADAKVIYGDTDSVMVKLGVDTVSRAMEVGREAAEWVSSHFTPPIKLEFEKVYYP 804
Query: 699 MLLLKKKKYAAL--SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L S S ++ KM C KG++ VRRD L + + IL
Sbjct: 805 YLLINKKRYAGLYFSSSADTHDKMDC----KGIETVRRDNCTLVANLINTCLQTIL---- 856
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+D Q H K++ +DL + ++ L ITK+LT+ +
Sbjct: 857 -----IDRDPQGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQ 896
>gi|170574522|ref|XP_001892851.1| DNA polymerase delta catalytic subunit [Brugia malayi]
gi|158601393|gb|EDP38315.1| DNA polymerase delta catalytic subunit, putative [Brugia malayi]
Length = 1084
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 169/331 (51%), Gaps = 45/331 (13%)
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTL 549
Y G V++P +GFY+ I +DF SLYPSI+ +N+C+TT+ L DSD+
Sbjct: 558 TYEGATVIDPIRGFYNTPIATLDFASLYPSIMIAHNLCYTTLIRGSNASHNLSDSDV--- 614
Query: 550 CEYLPEH------QVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKAL 601
E P + + G+LP ++ L+ +R+Q K +K D M + RQ AL
Sbjct: 615 -EVTPSNNRFVKSNIRRGLLPQVLEDLLNARKQAKNDLKN---EQDPFRRMVLNGRQLAL 670
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL------------NYE 649
K++ANS+YG G + ++ VTA GR+++ TKS VE + + +
Sbjct: 671 KISANSVYGFTGASVGKLPCLEISQSVTAYGRQMIDLTKSAVEQIYKEGYLDGKCPCDAQ 730
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYA 708
VIYGDTDS+M+ V D + ++G +E + K ++L+ + VY LL+ KK+YA
Sbjct: 731 VIYGDTDSVMVKFGVKDVKAAMELGLHAATEVSKKFIPPIKLEFEKVYSPFLLINKKRYA 790
Query: 709 ALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 768
L ++ I + KG++ VRRD L S+ + ++L E T +
Sbjct: 791 GLYFTRPEKHDKI---DCKGLETVRRDNCPLVSKVLSTCLEKMLLEGDAT---------S 838
Query: 769 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
EH KK+ +DL + ++ L ITK+LT++
Sbjct: 839 ALEHAKKVISDLLCNRIDISELIITKELTRS 869
>gi|297620193|ref|YP_003708298.1| DNA polymerase Pol2 [Methanococcus voltae A3]
gi|297379170|gb|ADI37325.1| DNA polymerase Pol2 [Methanococcus voltae A3]
Length = 879
Score = 136 bits (343), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 119/413 (28%), Positives = 197/413 (47%), Gaps = 61/413 (14%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL I + + L T S+ EFLL+ E++ + P++ + +E
Sbjct: 434 LPLEIMFSRIINQPLYDTSRMNSSQMVEFLLMKRSFEQNMISPNRPSSSSYRE------- 486
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R K +Y+GG V EP KG + I+ +DF SLYPSI+ +NI P +L D
Sbjct: 487 -----RAKFSYAGGYVREPLKGIQED-IVSLDFMSLYPSILISHNIS----PETVLYDEK 536
Query: 546 ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK---QPNLSSDLLMQYDIRQKALK 602
++ GI+P + +L+ R+++K L+K Q N + + + QK++K
Sbjct: 537 --------ERKNMELGIIPKTLDELLSRRKRIKKLLKDKIQKNEFDEEYNRLEHEQKSIK 588
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC 662
+ ANS YG L FP +R+++ A +VT GR+ + T E ++VIY DTD
Sbjct: 589 VLANSHYGYLAFPMARWYSDKCAEMVTGLGRKYIQETIEKAEKFGFKVIYADTDGFYAKW 648
Query: 663 N-------VNDYDSVFKIGNQ---------IKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
+ + D ++ + +KS ++L + +EL+ +G +K L + KKK
Sbjct: 649 DYEKAKTKIEDSGDALELSKEELIISTKKFLKSINDELPEGMELEFEGYFKRGLFITKKK 708
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 766
YA + +G ++ IKG++VVRRDWS +A + VI +L++ D +L ++
Sbjct: 709 YALIE----EDGHVV----IKGLEVVRRDWSNIAKNTQQAVIKALLED---GDINLAKKI 757
Query: 767 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+KK DL G + L I QLTK E K I +++ + R
Sbjct: 758 ------IKKTIDDLKKGNIDKNDLLIHTQLTKNIEEYKSTAPHIEVAKKIKQR 804
>gi|302663472|ref|XP_003023378.1| Catalytic subunit of DNA polymerase delta [Trichophyton verrucosum
HKI 0517]
gi|291187372|gb|EFE42760.1| Catalytic subunit of DNA polymerase delta [Trichophyton verrucosum
HKI 0517]
Length = 1111
Score = 136 bits (343), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 197/411 (47%), Gaps = 62/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+PD + N
Sbjct: 527 KLMCLVNYTEMA-RVTGVPFNFLL-----ARGQQIKFISQLFRKALEQKLVIPDLKNDDN 580
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ Y G V+EP + +Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 581 SNQ----------------QYEGATVIEPVRDYYPVPIATLDFASLYPSIIQAHNLCYTT 624
Query: 536 I----PVRML-----QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQ 583
+ V L +D +T + +V G+L +++L+ +R++ K A+ K
Sbjct: 625 LLSKRTVEKLGLKKGEDYIVTPNDDMFCTTKVRKGLLSQILEELLTARKRAKRELAVEKD 684
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
P + L + RQ ALK++ANS+YG G N + P+A+ T+ GR+++ TK V
Sbjct: 685 PFKKAVL----NGRQLALKISANSVYGITGATNGKLPCLPIASSTTSYGRQMIEKTKDEV 740
Query: 644 E---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDID 693
E + +VIYGDTDS+M+ D K+G + +K K ++L+ +
Sbjct: 741 EARYTISNGYTHDAKVIYGDTDSVMVKFGTTDLAEAMKLGEEAAGFVSSKFMKPIKLEFE 800
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +N + KG++ VRRD L + V+++IL
Sbjct: 801 KVYYPYLLINKKRYAGL---YWTNPVKYDKMDTKGIETVRRDNCLLVQTVIETVLNKIL- 856
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + ++K I +DL V ++ L ITK LTK GK
Sbjct: 857 --------IDRNVSGAETYVKNIISDLLQNKVDMSKLVITKALTKEEYTGK 899
>gi|121716875|ref|XP_001275938.1| DNA polymerase delta large chain [Aspergillus clavatus NRRL 1]
gi|119404095|gb|EAW14512.1| DNA polymerase delta large chain [Aspergillus clavatus NRRL 1]
Length = 1105
Score = 136 bits (343), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 120/405 (29%), Positives = 202/405 (49%), Gaps = 62/405 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +FL L E+ V+P N
Sbjct: 523 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFLSQLFRKALEQQLVIP------N 570
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K +E Y G V+EP +G+Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 571 MKSTDEQD------------YEGATVIEPIRGYYGVPIATLDFASLYPSIIQAHNLCYTT 618
Query: 536 I-------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ +++ +D D +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 619 LLNKNSVEKLKLKKDDDYIVTPNGDMFCTAKVRKGLLSQILEELLSARKRAK---KELAI 675
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 676 ETDPFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVE 735
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDG 694
+ + +VIYGDTDS+M+ V++ + K+G + +K K ++L+ +
Sbjct: 736 AKYTIANGYSHDAKVIYGDTDSVMVKFGVSELEDAMKLGQEAADFVSSKFLKPIKLEFEK 795
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
VY LL+ KK+YA L +N K + KG++ VRRD L + V+ +IL
Sbjct: 796 VYFPYLLINKKRYAGLY---WTNPKKFDKMDTKGIETVRRDNCLLVQNVIETVLHKIL-- 850
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+D + +++K +DL V ++ L ITK L+KA
Sbjct: 851 -------IDRDIDGAQDYVKDTISDLLQNKVDMSKLVITKALSKA 888
>gi|350645608|emb|CCD59733.1| DNA polymerase delta catalytic subunit,putative [Schistosoma
mansoni]
Length = 1177
Score = 136 bits (343), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 203/424 (47%), Gaps = 84/424 (19%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N I++ V G L+ L G+ + LL HE Y+LP Q +
Sbjct: 582 KLMCIVN----NIEMARVTGVPLTYLLTRGQQVKVVSQLLRKAHEHGYLLPTYQ----SQ 633
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+G+E + G VLEP+KGFY++ I +DF SLYPSI+ +N+C+TT+
Sbjct: 634 QGDE--------------FVGATVLEPRKGFYNEPIATLDFASLYPSIMMAHNLCYTTL- 678
Query: 538 VRM--------------------LQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRR 575
+++ L D D T Y + + GILP +++L+ +R+
Sbjct: 679 LQVNTTPHGSTGGGIQALVQRYNLTDEDYIKTPTGAYFVKSHICHGILPEILQQLLSARK 738
Query: 576 QVKALMKQPNLSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
+ KA + + +D L + D RQ ALK++ANS+YG G + ++A VT+ GR
Sbjct: 739 KAKAELAK---ETDPLRKRVLDGRQLALKISANSVYGFTGAQVGKLPCLEISASVTSFGR 795
Query: 634 EILLNTKSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ---IKSEC 681
++ TK VE + VIYGDTDS+M V+ ++G Q I SE
Sbjct: 796 LMIEQTKLHVEKKFTIANGYKHDAVVIYGDTDSVMCKFGVSTVTEAMELGRQAAEIISE- 854
Query: 682 NKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLA 740
+ K + L+ + VY LL+ KK+YA L +K + KM C KG++ VRRD S L
Sbjct: 855 -EFPKPIRLEFEKVYCPYLLINKKRYAGLYFTKPDRHDKMDC----KGIETVRRDNSPLV 909
Query: 741 SEAGKFVISQIL---DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLT 797
+ + +IL D + Y+ + + +DL + ++ L I+K+LT
Sbjct: 910 ANLINACLERILIDRDPNAAISYA------------QSVISDLLCNRIDISQLVISKELT 957
Query: 798 KAPE 801
K E
Sbjct: 958 KTDE 961
>gi|154344040|ref|XP_001567964.1| putative DNA polymerase delta catalytic subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134065298|emb|CAM40726.1| putative DNA polymerase delta catalytic subunit [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1032
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 122/425 (28%), Positives = 206/425 (48%), Gaps = 72/425 (16%)
Query: 403 VEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHE 462
V +K +L + ++MC +N +++ V G + L G+ + +LL +
Sbjct: 439 VYCLKDALLPVKLLDRLMCIVN----NVEMARVTGVPVGWLLERGQQIKVFSMLLRKAQK 494
Query: 463 KSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
K V+P +Y TG +++G Y G V++P KGFY+ + +DF SLY
Sbjct: 495 KKLVVPTVEY---------TGGSDRG-------YEGATVIDPIKGFYNCPVATLDFASLY 538
Query: 523 PSIIQEYNICFTTIP----VRMLQDS--DITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
PSII +N+C++T+ R+ + D + + + V GILP ++ L+ +R+
Sbjct: 539 PSIIIAHNLCYSTLVRPADARLYPEDALDRSPTSDVFVKKDVFPGILPEVLQDLLAARKH 598
Query: 577 VKALMKQPNLSSDLLMQYDI---RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
+A+MK + S ++Y + RQ ALK++ANS+YG G + ++A VTA GR
Sbjct: 599 ARAMMKDVPMHS---LEYKVLNGRQLALKVSANSVYGFTGAQVGKLPCLEISASVTAYGR 655
Query: 634 EILLNTKSLVENL--NYEVIYGDTDSLMISCNVND-----------YDSVFKIGNQIKSE 680
+++ TK+LVE L V+YGDTDS+M+ C ++ D + ++ S+
Sbjct: 656 QMIDKTKNLVEQLYPGTRVLYGDTDSVMVKCVTDEKASDKERLQAAMDFGIEAAERVSSD 715
Query: 681 CNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLA 740
K ++L+ + VY LL+ KK+YA L +N + KG++ VRRD L
Sbjct: 716 ---FLKPIKLEFEKVYFPYLLMNKKRYAGL---LWTNTDQFDKLDAKGIETVRRDNCPLV 769
Query: 741 SEAGKFVISQILDEQS------YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITK 794
+ V+++IL +S + ++ D L N R D+ N L ITK
Sbjct: 770 ARMVSGVLNRILIHRSVESAIDFVKGTISDLLLN--------RLDISN-------LVITK 814
Query: 795 QLTKA 799
+KA
Sbjct: 815 AFSKA 819
>gi|324120748|dbj|BAJ78765.1| DNA polymerase delta catalytic subunit [Vespa analis insularis]
Length = 1105
Score = 136 bits (342), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 200/408 (49%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + + +++ V G L L G+ + LL EK+Y++P
Sbjct: 526 KLMCII----IYMEMARVTGVSLMCLLTRGQQIKVVSQLLRKMREKNYLMP--------- 572
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ G+G + + GG V+EPK+G+Y I +DF+SLYPSII +N+C+TT+
Sbjct: 573 -------VHTGRGSDEQ-FEGGTVIEPKRGYYSDPIATLDFSSLYPSIIMAHNLCYTTLL 624
Query: 538 VR--------MLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ + T + V G+LP ++ L+ +R+ KA +K+ +D
Sbjct: 625 TSEKQNKYGLKIDEVTRTPSNSLFVKSTVKKGLLPEILENLLTARKVAKAELKK---ETD 681
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE--- 644
L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK VE
Sbjct: 682 PLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLEISASVTAYGRTMIEKTKHEVEQHY 741
Query: 645 --NLNYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
N Y+ VIYGDTDS+M++ V + ++G + +K ++L+ + VY
Sbjct: 742 CINNGYKNDAVVIYGDTDSVMVNFGVKKIEEAMELGKEAAEYVTSKFINPIKLEFEKVYF 801
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +K KM C KG++ VRRD L ++ + ++L
Sbjct: 802 PYLLINKKRYAGLYFTKPDKYDKMDC----KGLETVRRDNCPLVAKMMNTCLEKLL---- 853
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ ++ K+I +DL + ++ L ITK+LTK K
Sbjct: 854 -----IDRNPEDAIDYAKQIISDLLCNRIDISQLIITKELTKTDYAAK 896
>gi|340714998|ref|XP_003396008.1| PREDICTED: DNA polymerase delta catalytic subunit-like isoform 2
[Bombus terrestris]
Length = 1104
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 198/408 (48%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + +++ V G + L G+ + LL EK Y++P
Sbjct: 525 KLMCIF----IYMEMARVTGVSICSLLTRGQQIKVVSQLLRKTREKGYLIP--------- 571
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
++G+ + + G V+EPK+G+Y I +DF+SLYPSII +N+C+TT+
Sbjct: 572 -------VHRGQASDEQ-FEGATVIEPKRGYYSDPIATLDFSSLYPSIIMAHNLCYTTLL 623
Query: 538 VRMLQ-----DSDITTLCEYLPEHQVDT---GILPSEIKKLVESRRQVKALMKQPNLSSD 589
R Q DSD T+ + T GILP ++ L+ +R+ KA +K+ +D
Sbjct: 624 KRNTQIKLKIDSDDITVTPSDSQFVKATLRKGILPEILENLLTARKAAKAELKK---ETD 680
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK VE
Sbjct: 681 PLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLDISASVTAYGRTMIERTKQEVEGQY 740
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ V+YGDTDS+MI V + ++G + +K K ++L+ + VY
Sbjct: 741 CVSKGYKNDAVVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEFEKVYF 800
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L
Sbjct: 801 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLL---- 852
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
D + +D L + K+I +DL + ++ L +TK+LTK K
Sbjct: 853 -IDRNPNDALN----YAKQIISDLLCNRIDISQLVVTKELTKTDYAAK 895
>gi|281210761|gb|EFA84927.1| DNA polymerase delta catalytic subunit [Polysphondylium pallidum
PN500]
Length = 1999
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 107/339 (31%), Positives = 177/339 (52%), Gaps = 42/339 (12%)
Query: 488 GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----VRMLQD 543
GKG K + G +V+EP GFYD I +DF SLYPSI+ +N+C++T+ ++ L +
Sbjct: 1090 GKGDK---FKGAVVIEPTPGFYDTPIATLDFTSLYPSIMMAHNLCYSTLITQDYIKTLPN 1146
Query: 544 SDITTLCE----YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIR 597
++ T LP + G+LP +++L+ +R++ K +K + +D D R
Sbjct: 1147 TEYTVTPSGDAFILP--NIKKGLLPRILEELLTARKKAKEELK---VETDPFKKAVLDGR 1201
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNY 648
Q ALK++ANS+YG G + ++ VTA GRE+L T+ VE + +
Sbjct: 1202 QLALKISANSVYGFTGARVGKLPCIEISRSVTAFGREMLYKTRDFVEAKYTIANGYSHDA 1261
Query: 649 EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKY 707
++IYGDTDS+M+ V+ + +G E K++ + + LD + VY LL+ KKKY
Sbjct: 1262 KIIYGDTDSVMVKFGVSTVEEAMDLGRHASKEVTKIFIRPINLDFEKVYYPYLLMAKKKY 1321
Query: 708 AALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 766
A L +K KM ++KG++ +RRD L ++ IL +D +
Sbjct: 1322 AGLFWTKPDKFDKM----DVKGLENIRRDTCLLVRNVVSNILKMIL---------IDKDI 1368
Query: 767 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKV 805
+ E+ K + +DL + L++L ITK L+K+ G+V
Sbjct: 1369 KKAEEYTKSVISDLLQNRLDLSMLVITKALSKSEYKGRV 1407
>gi|145342057|ref|XP_001416112.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576336|gb|ABO94404.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 982
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 125/410 (30%), Positives = 207/410 (50%), Gaps = 47/410 (11%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I++ V G L+ L G+S + LL +++ ++P + K+G +A G
Sbjct: 406 IEMARVTGVPLNYLLTRGQSIKVMSQLLRKARQRNMLIP-----HHVKQGGGNVQAEGG- 459
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRMLQDSD 545
AY G VL+ K G+Y+ I +DF SLYPSI+ +N+C++T +P V L D
Sbjct: 460 ----VAYEGATVLDAKAGYYEMPIATLDFASLYPSIMMAHNLCYSTLVPKDKVGKLNPDD 515
Query: 546 ITTLCE---YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKA 600
T ++ +V GILP +++L+ +R++ KA +K+ ++D L + D RQ A
Sbjct: 516 YGTSPSGDTFVKASKVK-GILPEILEELLGARKRAKADLKK---ATDPLQKAVLDGRQLA 571
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVI 651
LK++ANS+YG G + +++ TA GR ++ +TK +VE N EVI
Sbjct: 572 LKVSANSVYGFTGAMVGQLPCLEISSSTTAYGRTMIDHTKKMVEEKYRTVNGYTGNAEVI 631
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAAL 710
YGDTDS+MI N D K+G + ++ + K ++L+ + VY LL+ KK+YA L
Sbjct: 632 YGDTDSVMIKFNTPDLAESMKLGEEAAVYVSETFLKPIKLEFEKVYWPYLLISKKRYAGL 691
Query: 711 SISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
+ N KM + KG++ VRRD L + + V+ +IL ++ +Q
Sbjct: 692 LWTNTENYDKM----DTKGIETVRRDNCLLVRQVIETVLEKILKQRD---------VQGA 738
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
++++ DL + + L ITK TK + V + I L++ R R
Sbjct: 739 VKYVQSTIADLLMNRLDFSQLVITKGFTKEADSYGVKMAHIELAQRMRQR 788
>gi|403343190|gb|EJY70918.1| DNA polymerase [Oxytricha trifallax]
Length = 1071
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 171/323 (52%), Gaps = 37/323 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPV-----RMLQDSDITTL 549
Y G +V+EP +GFY + +DF SLYPSI+ +N+C+++ IP L++ T
Sbjct: 537 YEGAVVIEPTRGFYTDPVATLDFASLYPSIMMAHNLCYSSLIPAHEIGKHPLENYIKTPN 596
Query: 550 CEYLPEHQVDTGILPSEIKKLVESR---RQVKALMKQPNLSSDLLMQYDIRQKALKLTAN 606
+Y + V G+LP +++L+ +R RQ A P + L D RQ ALK++AN
Sbjct: 597 GDYFMKQSVKKGLLPMILEELLAARKRARQELAKTTDPFQKAVL----DGRQLALKISAN 652
Query: 607 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV------EN---LNYEVIYGDTDS 657
S+YG G + +++ VT+ GRE++ T++ V EN + +VIYGDTDS
Sbjct: 653 SVYGFTGAQVGQLPCLAISSSVTSYGREMIEATRAYVLQKYNKENGYEFDSQVIYGDTDS 712
Query: 658 LMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKLS 716
+M+ V K+G + + + ++Q ++L+ + VY LL+ KK+YA L +K
Sbjct: 713 VMVKFGVKSIQEAMKLGQEAANYVTQFFQQPIKLEFEKVYCPYLLMNKKRYAGLLWTKPE 772
Query: 717 N-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKK 775
KM C KG++ VRRD + EA + ++ +L EQ + +LD + K
Sbjct: 773 KFDKMDC----KGIETVRRDNCGIVKEAVQSALNMLLIEQD-AEKALD--------YCKG 819
Query: 776 IRTDLDNGFVPLTLLEITKQLTK 798
I +DL + L+LL ITK L K
Sbjct: 820 IVSDLLQNRIDLSLLVITKGLGK 842
>gi|301030555|gb|ADK47977.1| type B polymerase [Thermococcus litoralis]
Length = 774
Score = 136 bits (342), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 114/401 (28%), Positives = 192/401 (47%), Gaps = 44/401 (10%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
P+ ++ + G + E+ LL +E++ + P NK + EE
Sbjct: 329 FPMEAELAKLIGQSVWDVSRSSTGNLVEWYLLRVAYERNELAP------NKPDEEEY--- 379
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
K R + Y GG V EP+KG ++ II +DF SLYPSII +N+ T+ ++ D
Sbjct: 380 ---KRRLRTTYLGGYVKEPEKGLWEN-IIYLDFRSLYPSIIVTHNVSPDTLEKEGCENYD 435
Query: 546 ITTLCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
I + Y P G +PS + L+ R+++K MK + M D RQ+A
Sbjct: 436 IAPIVSYRFCKDFP------GFIPSILGDLIAMRQEIKKKMKATIDPVERKML-DYRQRA 488
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLNYEVIYGDTDSLM 659
+KL ANS YG +G+P +R++++ A VTA GR + + K + E ++V+Y DTD
Sbjct: 489 VKLLANSYYGYMGYPKARWYSKECAESVTAWGRHYIEMTIKEIEEKFGFKVLYADTDGFY 548
Query: 660 ISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
+ + + + K + + N KL LEL+ +G Y + KK+YA + G
Sbjct: 549 ATISGEKPEIIKKKAREFLNYINSKLPGLLELEYEGFYLRGFFVTKKRYAVID----EEG 604
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
++ +G++VVRRDWS++A E V+ IL + S + ++++ E + K R
Sbjct: 605 RITT----RGLEVVRRDWSEIAKETQAKVLEAILKDGSVEKAV--EIVRDVLEKIAKYR- 657
Query: 779 DLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
VPL L I +Q+T+ + K + +++ R
Sbjct: 658 ------VPLEKLVIHEQITRDLKDYKAIGPHVAIAKRLAAR 692
>gi|256079239|ref|XP_002575896.1| DNA polymerase alpha catalytic subunit [Schistosoma mansoni]
Length = 511
Score = 136 bits (342), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 100/150 (66%), Gaps = 3/150 (2%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVF-VKENNSHSSCCVIVQNIDRK 257
S P +++ N + ++ DA ED + PG VYLFGK++ ++ +++SCC+ +++++R+
Sbjct: 364 SFPPSSNKGN--ILYFYWFDAHEDFKQLPGIVYLFGKLYDHSKSGTYASCCLRIKDLERR 421
Query: 258 IYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYL 317
I+LLPR+ + + ++ VY EF + +QYKI F+ + EK+YAF VP+ S+YL
Sbjct: 422 IFLLPRTSSPENGDIPTVKDVYMEFRDLTSQYKIGKFRCKTTEKRYAFEYADVPETSDYL 481
Query: 318 EVRYSAKCPALPSDLSGDTFSHVFGTKTSF 347
EVRY+A ALP+DL G TFSH+FGT TS
Sbjct: 482 EVRYAASYSALPADLQGKTFSHIFGTNTSL 511
Score = 68.9 bits (167), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 56/91 (61%), Gaps = 5/91 (5%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDG 158
K ++ A K+++ K +G + + E ++ VYE V E EY E V KR EDDWI DD G
Sbjct: 14 KESRLALLAKMREAKEKGERLRIE-KDEQPVYETVDEAEYAELVRKRLEDDWIVDDEGGD 72
Query: 159 YVEDGREIFDDDIEDVPQKKEKHDKRKKNKN 189
Y EDGREIFDD+ ED +E +D + K K+
Sbjct: 73 YAEDGREIFDDNDED----EESYDSKPKAKS 99
>gi|302497097|ref|XP_003010549.1| Catalytic subunit of DNA polymerase delta [Arthroderma benhamiae
CBS 112371]
gi|291174092|gb|EFE29909.1| Catalytic subunit of DNA polymerase delta [Arthroderma benhamiae
CBS 112371]
Length = 1111
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 197/411 (47%), Gaps = 62/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+PD + N
Sbjct: 527 KLMCLVNYTEMA-RVTGVPFNFLL-----ARGQQIKFISQLFRKALEQKLVIPDLKNDDN 580
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ Y G V+EP + +Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 581 SNQ----------------QYEGATVIEPVRDYYPVPIATLDFASLYPSIIQAHNLCYTT 624
Query: 536 I----PVRML-----QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQ 583
+ V L +D +T + ++ G+L +++L+ +R++ K A+ K
Sbjct: 625 LLSKRTVEKLGLKKGEDYIVTPNDDMFCTAKIRKGLLSQILEELLTARKRAKRELAVEKD 684
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
P + L + RQ ALK++ANS+YG G N + P+A+ T+ GR+++ TK V
Sbjct: 685 PFKKAVL----NGRQLALKISANSVYGITGATNGKLPCLPIASSTTSYGRQMIEKTKDEV 740
Query: 644 E---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDID 693
E + +VIYGDTDS+M+ D K+G + +K K ++L+ +
Sbjct: 741 EARYTISNGYTHDAKVIYGDTDSVMVKFGTTDLAEAMKLGEEAAGFVSSKFMKPIKLEFE 800
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +N + KG++ VRRD L + V+++IL
Sbjct: 801 KVYYPYLLINKKRYAGL---YWTNPVKYDKMDTKGIETVRRDNCLLVQTVIETVLNKIL- 856
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + ++K I +DL V ++ L ITK LTK GK
Sbjct: 857 --------IDRNVSGAETYVKNIISDLLQNKVDMSKLVITKALTKEEYTGK 899
>gi|256087234|ref|XP_002579779.1| DNA polymerase delta catalytic subunit [Schistosoma mansoni]
Length = 1182
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 129/424 (30%), Positives = 203/424 (47%), Gaps = 84/424 (19%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N I++ V G L+ L G+ + LL HE Y+LP Q +
Sbjct: 582 KLMCIVN----NIEMARVTGVPLTYLLTRGQQVKVVSQLLRKAHEHGYLLPTYQ----SQ 633
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+G+E + G VLEP+KGFY++ I +DF SLYPSI+ +N+C+TT+
Sbjct: 634 QGDE--------------FVGATVLEPRKGFYNEPIATLDFASLYPSIMMAHNLCYTTL- 678
Query: 538 VRM--------------------LQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRR 575
+++ L D D T Y + + GILP +++L+ +R+
Sbjct: 679 LQVNTTPHGSTGGGIQALVQRYNLTDEDYIKTPTGAYFVKSHICHGILPEILQQLLSARK 738
Query: 576 QVKALMKQPNLSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
+ KA + + +D L + D RQ ALK++ANS+YG G + ++A VT+ GR
Sbjct: 739 KAKAELAK---ETDPLRKRVLDGRQLALKISANSVYGFTGAQVGKLPCLEISASVTSFGR 795
Query: 634 EILLNTKSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ---IKSEC 681
++ TK VE + VIYGDTDS+M V+ ++G Q I SE
Sbjct: 796 LMIEQTKLHVEKKFTIANGYKHDAVVIYGDTDSVMCKFGVSTVTEAMELGRQAAEIISE- 854
Query: 682 NKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLA 740
+ K + L+ + VY LL+ KK+YA L +K + KM C KG++ VRRD S L
Sbjct: 855 -EFPKPIRLEFEKVYCPYLLINKKRYAGLYFTKPDRHDKMDC----KGIETVRRDNSPLV 909
Query: 741 SEAGKFVISQIL---DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLT 797
+ + +IL D + Y+ + + +DL + ++ L I+K+LT
Sbjct: 910 ANLINACLERILIDRDPNAAISYA------------QSVISDLLCNRIDISQLVISKELT 957
Query: 798 KAPE 801
K E
Sbjct: 958 KTDE 961
>gi|325193152|emb|CCA27509.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1084
Score = 135 bits (341), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 113/387 (29%), Positives = 182/387 (47%), Gaps = 46/387 (11%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I++ VCG + L G+ + +LL + ++P Q +N G+
Sbjct: 507 IEMARVCGVPIDYLLERGQQIKVYSMLLRKCKGANLLVPTLQRSQNANSGD--------- 557
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 549
A Y G V+EP K +Y I +DF SLYPSI+Q +N+C++T+ D D
Sbjct: 558 ----AGYEGATVIEPIKAYYTVPIATLDFASLYPSIMQAHNLCYSTLVAP--NDVDKLNP 611
Query: 550 CEYLPEHQVDT--------GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 601
+Y D GILP I++L+ +R+Q K M + + +Q + RQ AL
Sbjct: 612 LQYQTSPSGDVFVKADTRKGILPMIIEELLSARKQAKYDMSRATDPMEKAVQ-NGRQLAL 670
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIY 652
K++ANS+YG G + P+A+ +TA GR+ L TK VE + +VIY
Sbjct: 671 KISANSVYGFTGAVVGQLPCIPIASSITAYGRQFLFQTKEEVERQFCVANGYPADAQVIY 730
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M+ V + + S + ++ + L+ + VY LL+ KK+YA L
Sbjct: 731 GDTDSVMVKFGVETVAEAMPLAKEAASRVSSIFPSPILLEFEKVYFPYLLMNKKRYAGLL 790
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+ + + S KG++ VRRD L + + +IL +Q+ + E
Sbjct: 791 WTNADKYEKVDS---KGLETVRRDNCLLVRRLVETCLDKILIQQN---------VAGAIE 838
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTK 798
+ K + +DL + ++LL ITK L K
Sbjct: 839 YTKSMISDLLQNRIDISLLVITKGLKK 865
>gi|330793430|ref|XP_003284787.1| DNA polymerase delta catalytic subunit [Dictyostelium purpureum]
gi|325085281|gb|EGC38691.1| DNA polymerase delta catalytic subunit [Dictyostelium purpureum]
Length = 1026
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 109/340 (32%), Positives = 175/340 (51%), Gaps = 39/340 (11%)
Query: 487 KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPV----RML 541
K G+ + G +V+EPK FYD I +DF SLYPSI+ +N+C++T +P ++
Sbjct: 500 KVTGKAGEKFKGAVVIEPKCAFYDTPIATLDFTSLYPSIMMAHNLCYSTLLPAEEAKKLP 559
Query: 542 QDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDI 596
D T ++ H+ G+LP +++L+ +R+ K L+K P + L D
Sbjct: 560 ADEYTVTPSGDHFILPHK-KKGLLPRILEELLSARKNAKELLKNEKDPFKKAVL----DG 614
Query: 597 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLN 647
RQ ALK++ANS+YG G + ++ VT+ GRE+L TK +VE N +
Sbjct: 615 RQLALKISANSVYGFTGARVGKLPCVEISRSVTSFGREMLDTTKKIVEERYTIANGYNHD 674
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKK 706
VIYGDTDS+M+ V +G + E K + + + LD + VY LL+ KKK
Sbjct: 675 AVVIYGDTDSVMVKFGVPTVAEAMALGREASKEVTKHFIRPINLDFEKVYYPYLLMAKKK 734
Query: 707 YAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
YA L +K + KM ++KG++ VRRD L ++ ++L E+
Sbjct: 735 YAGLFWTKPDIHDKM----DVKGLETVRRDTCLLVRNVVSTILKKLLIEKD--------- 781
Query: 766 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKV 805
++ E+ K + +DL + L++L ITK L+K+ G+V
Sbjct: 782 IKQAEEYTKSVISDLLQNRLDLSMLVITKALSKSQYKGRV 821
>gi|350397570|ref|XP_003484917.1| PREDICTED: DNA polymerase delta catalytic subunit-like isoform 1
[Bombus impatiens]
Length = 1090
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 199/408 (48%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + +++ V G + L G+ + LL EK Y++P
Sbjct: 511 KLMCIF----IYMEMARVTGVSICSLLTRGQQIKVVSQLLRKTREKDYLIP--------- 557
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
++G+ + + G V+EPK+G+Y I +DF+SLYPSII +N+C+TT+
Sbjct: 558 -------VHRGQASDEQ-FEGATVIEPKRGYYSDPIATLDFSSLYPSIIMAHNLCYTTLL 609
Query: 537 ----PVRMLQDSDITTLCEY---LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+++ DSD T+ + + GILP ++ L+ +R+ KA +K+ +D
Sbjct: 610 KRDTEIKLKIDSDDITVTPSDSKFVKATLRKGILPEILESLLSARKAAKAELKK---ETD 666
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK VE
Sbjct: 667 PLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLDISASVTAYGRTMIERTKQEVEEQY 726
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ V+YGDTDS+MI V + ++G + +K K ++L+ + VY
Sbjct: 727 CVSKGYKNDAVVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEFEKVYF 786
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L
Sbjct: 787 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLL---- 838
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
D + +D L + K+I +DL + ++ L +TK+LTK K
Sbjct: 839 -IDRNPNDALN----YAKQIISDLLCNRIDISQLVVTKELTKTDYAAK 881
>gi|163916151|gb|AAI57513.1| Unknown (protein for MGC:180510) [Xenopus (Silurana) tropicalis]
Length = 911
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 123/410 (30%), Positives = 193/410 (47%), Gaps = 68/410 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL ++ V+P K
Sbjct: 530 KLMCVINYMEMA----RVTGVPLSYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVKS 580
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT
Sbjct: 581 EGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTT-- 625
Query: 538 VRMLQDSDI------------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
+LQ I T + + + G+LP ++ L+ +R++ K +K+
Sbjct: 626 --LLQSGSIDKYGLSPEDFIKTPTGDCFVKASIRKGLLPEILENLLCARKRAKTELKK-- 681
Query: 586 LSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
+D Q D RQ ALK++ANS+YG G + ++ VT GR+++ TK LV
Sbjct: 682 -ETDPFKQKVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLV 740
Query: 644 EN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDID 693
E+ + +VIYGDTDS+M V +IG + + + ++L+ +
Sbjct: 741 ESKYTLDNGYKADAKVIYGDTDSVMCKLGVQTVGETMEIGREAAEWVSSHFTPPIKLEFE 800
Query: 694 GVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
VY LL+ KK+YA L S +N KM C KG++ VRRD L + + +I
Sbjct: 801 KVYFPYLLINKKRYAGLYFSSSANTHDKMDC----KGIETVRRDNCPLVANLINTCLQKI 856
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +D EH K + +DL + ++ L ITK+LT+ +
Sbjct: 857 L---------IDRDPMGAVEHAKDVISDLLCNRIDISQLVITKELTRTAD 897
>gi|340714996|ref|XP_003396007.1| PREDICTED: DNA polymerase delta catalytic subunit-like isoform 1
[Bombus terrestris]
Length = 1090
Score = 135 bits (341), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 124/408 (30%), Positives = 198/408 (48%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + +++ V G + L G+ + LL EK Y++P
Sbjct: 511 KLMCIF----IYMEMARVTGVSICSLLTRGQQIKVVSQLLRKTREKGYLIP--------- 557
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
++G+ + + G V+EPK+G+Y I +DF+SLYPSII +N+C+TT+
Sbjct: 558 -------VHRGQASDEQ-FEGATVIEPKRGYYSDPIATLDFSSLYPSIIMAHNLCYTTLL 609
Query: 538 VRMLQ-----DSDITTLCEYLPEHQVDT---GILPSEIKKLVESRRQVKALMKQPNLSSD 589
R Q DSD T+ + T GILP ++ L+ +R+ KA +K+ +D
Sbjct: 610 KRNTQIKLKIDSDDITVTPSDSQFVKATLRKGILPEILENLLTARKAAKAELKK---ETD 666
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK VE
Sbjct: 667 PLKQKVLDGRQYALKVSANSVYGFTGAQMGKLPCLDISASVTAYGRTMIERTKQEVEGQY 726
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ V+YGDTDS+MI V + ++G + +K K ++L+ + VY
Sbjct: 727 CVSKGYKNDAVVVYGDTDSVMIKFGVKTVEEAMELGREAAEYVSSKFLKPIKLEFEKVYF 786
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L
Sbjct: 787 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLL---- 838
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
D + +D L + K+I +DL + ++ L +TK+LTK K
Sbjct: 839 -IDRNPNDALN----YAKQIISDLLCNRIDISQLVVTKELTKTDYAAK 881
>gi|302850307|ref|XP_002956681.1| hypothetical protein VOLCADRAFT_67281 [Volvox carteri f.
nagariensis]
gi|300258042|gb|EFJ42283.1| hypothetical protein VOLCADRAFT_67281 [Volvox carteri f.
nagariensis]
Length = 991
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 204/412 (49%), Gaps = 53/412 (12%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I++ V G LS L G+S + LL K +V+P+ + TG AN G
Sbjct: 411 IEMARVTGVPLSYLLTRGQSIKVFSQLLRKAQVKDFVIPNIKV---------TGPANGGD 461
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT---------TIPVRM 540
G Y G VLEPK GFY++ + +DF SLYPSI+ +N+C+T T+PV
Sbjct: 462 G---VGYEGATVLEPKIGFYERPVATLDFASLYPSIMMAHNLCYTTLVPNDRLATVPV-- 516
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQ 598
+D + ++ G+LP +++L+ +R++ K +K +D D RQ
Sbjct: 517 -EDRAQSPCGDWFVRGTRQRGLLPEILEELLAARKRAKNDLKA---ETDPFKRAVLDGRQ 572
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYE 649
ALK++ANS+YG G + ++A VT+ GRE+++ T++LV+ + E
Sbjct: 573 LALKVSANSVYGFTGATVGKMPCLAISASVTSYGREMIMKTRALVQEHYTRANGYETDCE 632
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYA 708
VIYGDTDS+M++ V+D ++G + +K + ++L+ + VY LL+ KK+YA
Sbjct: 633 VIYGDTDSVMVNFKVSDVTRAMELGREAAGFVSKAFPPPVKLEFEKVYFPYLLMNKKRYA 692
Query: 709 ALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
L ++ + KM + KG++ VRRD L + +IL +D +
Sbjct: 693 GLLWTRPEKHDKM----DSKGIETVRRDNCLLVRNVVTTCLERIL---------IDKDIA 739
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
++K + DL + L+LL I+K LTK + I + L++ R R
Sbjct: 740 AAKAYVKGVIADLLMNKIDLSLLVISKGLTKDGDEYDTKIAHVELAKKMRKR 791
>gi|302911020|ref|XP_003050401.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256731338|gb|EEU44688.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1104
Score = 135 bits (341), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 168/326 (51%), Gaps = 40/326 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDITTLCEYLP 554
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT + + ++ + +Y+
Sbjct: 577 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLVSKKAIEAFGLQKDEDYIV 636
Query: 555 EHQVDT--------GILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
DT G+L +++L+ +R+Q K A+ K P + L + RQ ALK+
Sbjct: 637 TPNGDTFVTVKQRKGLLAQILEELLAARKQAKRELAVEKDPFKKAVL----NGRQLALKI 692
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGD 654
+ANS+YG G + +A+ T+ GR+++ TK VEN + +VIYGD
Sbjct: 693 SANSVYGLTGATTGKLPCLEIASSTTSFGRKMIEKTKEEVENRYNIANGYSHDAQVIYGD 752
Query: 655 TDSLMISCNVNDYDSVFKIGNQI-KSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+MI D K+G + K +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 753 TDSVMIKFGTKDLKEAMKLGEEASKYVSDKFVKPIKLEFEKVYFPYLLINKKRYAGLYWT 812
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
K KM + KG++ VRRD L + V+ IL +D +Q E+
Sbjct: 813 KPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVQGAQEY 859
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K+ DL V ++ L ITK LTK
Sbjct: 860 VKETIADLLQNKVDMSKLVITKALTK 885
>gi|91080425|ref|XP_968280.1| PREDICTED: similar to AGAP008757-PA [Tribolium castaneum]
gi|270005752|gb|EFA02200.1| hypothetical protein TcasGA2_TC007856 [Tribolium castaneum]
Length = 227
Score = 135 bits (340), Expect = 1e-28, Method: Composition-based stats.
Identities = 65/98 (66%), Positives = 78/98 (79%), Gaps = 3/98 (3%)
Query: 1 MLILATFVPTTDNFSG-GVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
MLILATF P DN S G DV G+ +K ++DL D VG Y+VL+ IPGKGH+K+LTAG+GW
Sbjct: 50 MLILATFFP--DNVSDLGSDVLGEFLKSTVDLADLVGLYVVLAGIPGKGHSKVLTAGIGW 107
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
A AEVIL+R L LWVGARGAEFDWKYIQ L+SN+ L+
Sbjct: 108 ATAEVILSRALLLWVGARGAEFDWKYIQKCLESNVSLV 145
>gi|384248668|gb|EIE22151.1| DNA polymerase delta subunit one [Coccomyxa subellipsoidea C-169]
Length = 1116
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 127/397 (31%), Positives = 200/397 (50%), Gaps = 64/397 (16%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I++ V G +S L G+S + +L +K+ ++P++ + +G TG+
Sbjct: 537 IEMARVTGVPMSFLLTRGQSIKVFSQILRKARQKNLLVPNQP----RMQGA-TGDG---- 587
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRMLQDSD 545
AY G VL+ K+GFY + +DF SLYPSI+ +N+C++T +P V+ L D
Sbjct: 588 ----VAYEGATVLDAKQGFYKTPVATLDFASLYPSIMMAHNLCYSTLLPPDRVKELSPED 643
Query: 546 I----TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQK 599
+ T C GILP +++L+ +R++ KA +K +SD M+ D RQ
Sbjct: 644 VLRCPTGHC--FVRAARAKGILPEILEELLGARKRAKADLKA---ASDPFMKAVLDGRQL 698
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEV 650
ALK++ANS+YG G + ++A VTA GR ++ +TK LVE + +V
Sbjct: 699 ALKVSANSVYGFTGAVIGKMPCLEISASVTAFGRNMIDHTKKLVEERYQRKNGYEADCDV 758
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAA 709
IYGDTDS+M+ V D ++G + +K + K ++L+ + VYK LL+ KK+YA
Sbjct: 759 IYGDTDSVMVHFRVKDIGRAMELGREAADFVSKTFVKPIKLEFEKVYKPYLLINKKRYAG 818
Query: 710 LSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DEQ---SYTDYSL 762
L +K KM + KG++ VRRD QL + IL DE+ +Y ++
Sbjct: 819 LLYTKPDKYDKM----DTKGIETVRRDNCQLVRTVVSTCLEMILINEDEEGAKAYVRATI 874
Query: 763 DDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
D L N R D L+LL ITK T++
Sbjct: 875 SDLLMN--------RLD-------LSLLVITKARTQS 896
>gi|407862999|gb|EKG07818.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma
cruzi]
Length = 1029
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 173/336 (51%), Gaps = 42/336 (12%)
Query: 487 KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---------P 537
G G + Y G V+EP KGFY+ I+ +DF SLYPSII +N+C++T+ P
Sbjct: 500 SGGGGDQRGYEGATVIEPLKGFYNCPIVTLDFASLYPSIIIAHNLCYSTLVRPSDIVRYP 559
Query: 538 VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI- 596
ML T + + ++ GILP ++ L+ +R++ K+LMK + S ++Y +
Sbjct: 560 AEMLSR---TPTGDTFVKKELFPGILPEVLQDLLAARKRAKSLMKDVPMES---LEYKVL 613
Query: 597 --RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL--NYEVIY 652
RQ ALK++ANS+YG G + +++ VTA GR ++ TK LVE+L +V+Y
Sbjct: 614 NGRQLALKISANSVYGFTGAQVGKLPCLEVSSSVTAYGRLMIDQTKFLVESLYPGVKVVY 673
Query: 653 GDTDSLMISCNVN---------DYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK 703
GDTDS+MI C + +Y F G + + ++L+ + VY LL+
Sbjct: 674 GDTDSVMIKCLTDEKGTEKERLEYAMTFGKGAA-EEVSSHFLNPIKLEFEKVYFPYLLMN 732
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
KK+YA L +N + + KG++ VRRD L + V+++IL ++S
Sbjct: 733 KKRYAGL---LWTNTERYDKLDAKGIETVRRDNCPLVASVISGVLNRILIQRS------- 782
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + E +K DL + ++ L ITK +KA
Sbjct: 783 --VDSAVEFVKGTIRDLLLNRLDISHLVITKTFSKA 816
>gi|240147818|gb|ACS45145.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 85/117 (72%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S++ Q DIRQKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKYVKGLMADPKASAEY-AQVDIRQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL +T L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQDTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKILKELVNKQYKSLEI 118
>gi|312081845|ref|XP_003143198.1| DNA-directed DNA polymerase III [Loa loa]
gi|307761639|gb|EFO20873.1| DNA-directed DNA polymerase III [Loa loa]
Length = 1084
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 170/327 (51%), Gaps = 37/327 (11%)
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRM--LQDSD--IT 547
Y G V++P +GFY+ I +DF SLYPSI+ +N+C+TT+ P+ L DSD +T
Sbjct: 558 TYEGATVIDPIRGFYNTPIATLDFASLYPSIMIAHNLCYTTLIRRPIASYNLSDSDFEVT 617
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + G+LP ++ L+ +R+Q K +K D M + RQ ALK++A
Sbjct: 618 PSNNRFVKPNIRHGLLPQVLEDLLNARKQAKNDLKN---EQDPFRRMVLNGRQLALKISA 674
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL------------NYEVIYG 653
NS+YG G + ++ VTA GR+++ TK+ VE + + +VIYG
Sbjct: 675 NSVYGFTGASVGKLPCLEISQSVTAYGRQMIDLTKNAVEEIYKEGYLDGKCPCDAQVIYG 734
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSI 712
DTDS+M+ V D + ++G +E + K ++L+ + VY LL+ KK+YA L
Sbjct: 735 DTDSVMVKFGVKDVKAAMELGLHAATEVSKKFIPPIKLEFEKVYSPFLLINKKRYAGLYF 794
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
++ I + KG++ VRRD L S+ + ++L E T + EH
Sbjct: 795 TRPEKHDKI---DCKGLETVRRDNCPLVSKVLSTCLEKMLLEGDAT---------SALEH 842
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
KK+ +DL + ++ L ITK+LT++
Sbjct: 843 AKKVISDLLCNRIDISELIITKELTRS 869
>gi|325969294|ref|YP_004245486.1| DNA polymerase Pol2 [Vulcanisaeta moutnovskia 768-28]
gi|323708497|gb|ADY01984.1| DNA polymerase Pol2 [Vulcanisaeta moutnovskia 768-28]
Length = 784
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 110/374 (29%), Positives = 192/374 (51%), Gaps = 55/374 (14%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP AIQ++++ G L + R E+++ + ++ + P N++E
Sbjct: 354 LLPFAIQLSSISGLPLDQVGAASVGARVEWMIFYEAVKRGELAP------NREE------ 401
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 544
R Y G +VLEP+ G ++ I ++DF+S+YPSI+ +YN+ T+ +L D
Sbjct: 402 ------RPYETYKGAVVLEPRPGLHED-IAVIDFSSMYPSIMMKYNVSPDTL---VLGDC 451
Query: 545 DITTLCEYLPE-----HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599
D C PE + G+ P ++ LVESRR+V+ LMK+ +S + RQ+
Sbjct: 452 DD---CHVAPEVNYKFRKSPEGLYPGLLRMLVESRRKVRELMKKYPENSPEWTLLNERQR 508
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
ALK+ AN+MYG G+ +R++ + +A VTA GR +L ++L+ +IYGDTDSL
Sbjct: 509 ALKVMANAMYGYCGWLGARWYRREVAEAVTAWGRNLLKTVIEKAKSLSLPIIYGDTDSLF 568
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNG 718
+ N D V + N I +E ++ +D VY+ +L + KK+Y L+I +G
Sbjct: 569 VR---NISDKVDALINYINNELG-----FDVKVDKVYRRVLFTEAKKRYVGLTI----DG 616
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DEQSYTDYSLDDRLQNIHEHMKK 775
++ +I G + R DW+++A + + V +L D Y +++I + +K
Sbjct: 617 EI----DIVGFEAARGDWAEIAKDVQESVAEIVLTTGDVSKAVSY-----VKSIIDKVKA 667
Query: 776 IRTDLDNGFVPLTL 789
+ D+D+ + TL
Sbjct: 668 YQFDIDDVIIWKTL 681
>gi|345564490|gb|EGX47452.1| hypothetical protein AOL_s00083g388 [Arthrobotrys oligospora ATCC
24927]
Length = 1099
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 198/410 (48%), Gaps = 69/410 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +FL L E+S V+P++
Sbjct: 512 KLMCLINYAEMA-RVTGVPFNFLL-----ARGQQVKFLSQLFRKAGEQSLVVPNR----- 560
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
E G G + Y G V+EP +GFY + + +DF SLYPSI+ +N+C+TT
Sbjct: 561 --------EQKVGGGGDEEQYEGATVIEPTRGFYKEPVATLDFASLYPSIMMAHNLCYTT 612
Query: 536 IP---------VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ ++ +D +T + V G+L + + L+ +R++ K +K
Sbjct: 613 LTKQEHMDKMGMKEGEDYHVTPTGDVFVNTSVRKGLLVTIFEDLLGARKRAKNDLKN--- 669
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G N + +A+ T+ GRE++ TK+ VE
Sbjct: 670 ETDPFKKAVLNGRQLALKISANSVYGLTGATNGKLPCLAIASSCTSYGREMIEATKAEVE 729
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDG 694
+ + +VIYGDTDS+M+ D V +G + + +K ++L+ +
Sbjct: 730 KRYTIANGYSHDAQVIYGDTDSVMVKFGPKDLKKVMAMGEEAAAFVSSKFINPIKLEFEK 789
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL-- 752
VY LL+ KK+YA L +N + KG++ VRRD +L + V+ +IL
Sbjct: 790 VYFPYLLINKKRYAGL---YWTNPNKYDKMDSKGIETVRRDNCRLVQTVIETVLKKILID 846
Query: 753 -DE---QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
DE Q+Y + D LQN + D+ N L ITK L+K
Sbjct: 847 QDEDGAQAYVKDMISDLLQN--------KVDMSN-------LVITKALSK 881
>gi|169775879|ref|XP_001822406.1| DNA polymerase delta catalytic subunit [Aspergillus oryzae RIB40]
gi|238502533|ref|XP_002382500.1| DNA polymerase delta catalytic subunit Cdc2, putative [Aspergillus
flavus NRRL3357]
gi|83771141|dbj|BAE61273.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220691310|gb|EED47658.1| DNA polymerase delta catalytic subunit Cdc2, putative [Aspergillus
flavus NRRL3357]
gi|391871049|gb|EIT80215.1| DNA polymerase delta, catalytic subunit [Aspergillus oryzae 3.042]
Length = 1104
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 120/411 (29%), Positives = 204/411 (49%), Gaps = 64/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P+ N
Sbjct: 522 KLMCLINYTEMA-RVTGVPFNFLL-----SRGQQVKFMSQLFRKALEQQLVIPN-----N 570
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
E E+ Y G V+EP +G+Y+ I +DF SLYPSIIQ +N+C+TT
Sbjct: 571 TPESEQ-------------EYEGATVIEPVRGYYNVPIATLDFASLYPSIIQAHNLCYTT 617
Query: 536 I---------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ ++ +D +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 618 LLNKKAVERYNLKKDEDYIVTPNGDLFCTTKVRKGLLSQILEELLAARKRAK---KELAV 674
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 675 ETDPFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVE 734
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ + +VIYGDTDS+M+ V + K+G + +K K ++L+ +
Sbjct: 735 ARYTIANGYSHDAKVIYGDTDSVMVKFGVTELADAMKLGQEASEYVSSKFLKPIKLEFEK 794
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +K KM + KG++ VRRD L + V+ +IL
Sbjct: 795 VYFPYLLINKKRYAGLYWTKTEKYDKM----DTKGIETVRRDNCLLVQNVIETVLHKIL- 849
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + + E++K+ +DL V ++ L ITK L+K+ K
Sbjct: 850 --------IDRDVDSAQEYVKETISDLLQNKVDMSKLVITKALSKSDYAAK 892
>gi|71412800|ref|XP_808567.1| DNA polymerase delta catalytic subunit [Trypanosoma cruzi strain CL
Brener]
gi|70872801|gb|EAN86716.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma
cruzi]
Length = 1029
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 173/336 (51%), Gaps = 42/336 (12%)
Query: 487 KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---------P 537
G G + Y G V+EP KGFY+ I+ +DF SLYPSII +N+C++T+ P
Sbjct: 500 SGGGGDQRGYEGATVIEPLKGFYNCPIVTLDFASLYPSIIIAHNLCYSTLVRPSDIVRYP 559
Query: 538 VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI- 596
ML T + + ++ GILP ++ L+ +R++ K+LMK + S ++Y +
Sbjct: 560 AEMLSR---TPTGDTFVKKELFPGILPEVLQDLLAARKRAKSLMKDVPMES---LEYKVL 613
Query: 597 --RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL--NYEVIY 652
RQ ALK++ANS+YG G + +++ VTA GR ++ TK LVE+L +V+Y
Sbjct: 614 NGRQLALKISANSVYGFTGAQVGKLPCLEVSSSVTAYGRLMIDQTKFLVESLYPGVKVVY 673
Query: 653 GDTDSLMISCNVN---------DYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK 703
GDTDS+MI C + +Y F G + + ++L+ + VY LL+
Sbjct: 674 GDTDSVMIKCLTDEKGTEKERLEYAMTFGKGAA-EEVSSHFLNPIKLEFEKVYFPYLLMN 732
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
KK+YA L +N + + KG++ VRRD L + V+++IL ++S
Sbjct: 733 KKRYAGL---LWTNTERYDKLDAKGIETVRRDNCPLVASVISGVLNRILIQRS------- 782
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + E +K DL + ++ L ITK +KA
Sbjct: 783 --VDSAVEFVKGTIRDLLLNRLDISHLVITKTFSKA 816
>gi|378755079|gb|EHY65106.1| hypothetical protein NERG_01552 [Nematocida sp. 1 ERTm2]
Length = 1020
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 177/368 (48%), Gaps = 63/368 (17%)
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL--CEY 552
Y GG V+EP KGFY ++++D+ SLYPSII YN+C+TT +L + + EY
Sbjct: 480 TYEGGYVMEPNKGFYSNPVVVLDYASLYPSIIMAYNMCYTT----LLSKEQASKMDKSEY 535
Query: 553 LPEHQVDT--------GILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKAL 601
D GILP + L+E R+ V+A +K P L + L + RQ AL
Sbjct: 536 TESPTGDCFLRKEKKPGILPVILTGLLEGRKAVRAELKNIKDPELKASL----NARQLAL 591
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------------- 645
K++ANS+YG G + P++ VT GREIL TK LVEN
Sbjct: 592 KVSANSVYGFTGAARTGLPCIPISRSVTGFGREILKKTKELVENEYNKGEKTEGSDEQEN 651
Query: 646 -----------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQI-KSECNKLYKQLELDID 693
N V YGDTDS+M++ + F++G++I K +L L L+ +
Sbjct: 652 NNSQKEGNRRTWNLFVAYGDTDSVMVTQPGLTLEQAFQVGDEISKFVSTRLPNPLTLEFE 711
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY +L+ KK+YA + + S+ I + KG++ VRRD L + K I+++
Sbjct: 712 KVYHPFVLINKKRYAGCTKTSPSDKGRI---DTKGIETVRRDNCLLVRDLMKECINKVF- 767
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLS 813
L+ ++ +K +L + + ++ L ITK +TK +GG ++ ++
Sbjct: 768 --------LEGDVEGTRALIKDRVKELLSNRIGISQLIITKSITK--QGGDYAVSLAHVA 817
Query: 814 RNRRGRRR 821
R ++R
Sbjct: 818 LAERMKKR 825
>gi|296816038|ref|XP_002848356.1| DNA polymerase delta catalytic subunit [Arthroderma otae CBS
113480]
gi|238841381|gb|EEQ31043.1| DNA polymerase delta catalytic subunit [Arthroderma otae CBS
113480]
Length = 1113
Score = 135 bits (340), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 197/411 (47%), Gaps = 62/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+PD + +N
Sbjct: 529 KLMCLVNYTEMA-RVTGVPFNFLL-----ARGQQIKFISQLFRKALEQKLVIPDLKNDEN 582
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ Y G V+EP + +Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 583 SNQ----------------QYEGATVIEPVRDYYPVPIATLDFASLYPSIIQAHNLCYTT 626
Query: 536 I----PVRML-----QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQ 583
+ V L +D +T + +V G+L +++L+ +R++ K A+ K
Sbjct: 627 LLNKRTVEKLGLKKGEDYIVTPNDDMFCTAKVRKGLLSQILEELLSARKRAKRELAVEKD 686
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
P + L + RQ ALK++ANS+YG G N + P+A+ T+ GR+++ TK V
Sbjct: 687 PFKKAVL----NGRQLALKISANSVYGITGATNGKLPCLPIASSTTSYGRQMIEKTKDEV 742
Query: 644 E---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDID 693
E + +VIYGDTDS+M+ D K+G + +K K ++L+ +
Sbjct: 743 EARYTISNGYTHDAKVIYGDTDSVMVKFGTKDLAEAMKLGEEAAGYVSSKFMKPIKLEFE 802
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +N + KG++ VRRD L + V+++IL
Sbjct: 803 KVYYPYLLINKKRYAGL---YWTNPDKYDKMDTKGIETVRRDNCLLVQTVIETVLNKIL- 858
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + ++K +DL V ++ L ITK LTK GK
Sbjct: 859 --------IDRNVSGAETYVKNTISDLLQNKVDMSKLVITKALTKDKYSGK 901
>gi|327300054|ref|XP_003234720.1| DNA polymerase subunit delta large [Trichophyton rubrum CBS 118892]
gi|326463614|gb|EGD89067.1| DNA polymerase subunit delta large [Trichophyton rubrum CBS 118892]
Length = 1111
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 123/411 (29%), Positives = 198/411 (48%), Gaps = 62/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+PD + N
Sbjct: 527 KLMCLVNYTEMA-RVTGVPFNFLL-----ARGQQIKFISQLFRKALEQKLVIPDLKNDDN 580
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ Y G V+EP + +Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 581 SNQ----------------QYEGATVIEPVRDYYPVPIATLDFASLYPSIIQAHNLCYTT 624
Query: 536 I----PVRML-----QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQ 583
+ V L +D +T + +V G+L +++L+ +R++ K A+ K
Sbjct: 625 LLSKRTVEKLGLKKGEDYIVTPNDDMFCTAKVRKGLLSQILEELLAARKRAKRELAVEKD 684
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
P + L + RQ ALK++ANS+YG G N + P+A+ T+ GR+++ TK V
Sbjct: 685 PFKKAVL----NGRQLALKISANSVYGITGATNGKLPCLPIASSTTSYGRQMIEKTKEEV 740
Query: 644 E---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDID 693
E + +VIYGDTDS+M+ D K+G + +K K ++L+ +
Sbjct: 741 EARYTISNGYTHDAKVIYGDTDSVMVKFGTTDLAEAMKLGEEAAGFVSSKFMKPIKLEFE 800
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +N + KG++ VRRD L + V+++IL
Sbjct: 801 KVYYPYLLINKKRYAGL---YWTNPVKYDKMDTKGIETVRRDNCLLVQTVIETVLNKILI 857
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
E++ + ++K I +DL V ++ L ITK LTK GK
Sbjct: 858 ERN---------VSGAETYVKNIISDLLQNKVDMSKLVITKALTKEEYTGK 899
>gi|328855214|gb|EGG04342.1| hypothetical protein MELLADRAFT_53062 [Melampsora larici-populina
98AG31]
Length = 1067
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 121/409 (29%), Positives = 202/409 (49%), Gaps = 59/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+ + L E SY++P +Y
Sbjct: 486 KLMCFVNYTEMA-RVTGVPFNYL---LSRGQQIKVVSQLYRRAGEFSYIVPAMKY----- 536
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG + + G +V++P +G+YD I +DF SLYPSI+ +N+C+TT+
Sbjct: 537 EGSDD------------QFDGAIVMDPIRGYYDVPIATLDFASLYPSIMMAHNLCYTTLT 584
Query: 538 -------VRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ ++++ D IT +Y + G+L ++ L+ +R++ +A +K L +
Sbjct: 585 DAKTAKQLGLVENEDYIITPNGDYFVKTSKRKGLLAIVLEDLLSARKRARAELK---LET 641
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL 646
D D RQ ALK++ANS+YG G + P+ VTA GRE++ TK+ VE
Sbjct: 642 DPFKKAVLDGRQLALKVSANSVYGFTGATVGKLPCLPIPMSVTAFGREMIKTTKAEVEAT 701
Query: 647 ---------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVY 696
+ +VIYGDTDS+M+ D + ++G + + K K ++L+ + VY
Sbjct: 702 YTKANGYEHDAQVIYGDTDSVMVRFGCKDLATSMRLGAEAADLVSTKFVKPIKLEFEKVY 761
Query: 697 KYMLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L +K + KM + KG++ VRRD +L + + ++L
Sbjct: 762 FPYLLISKKRYAGLYWTKPEKHDKM----DAKGIETVRRDNCRLVQTVIETCLKKML--- 814
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D +Q ++ K++ DL V L+ L ITK L K+ K
Sbjct: 815 ------IDRDVQGAEDYTKQVIADLLQNKVDLSQLVITKALAKSDYAAK 857
>gi|17559488|ref|NP_506017.1| Protein F10C2.4 [Caenorhabditis elegans]
gi|13124199|sp|P90829.1|DPOD1_CAEEL RecName: Full=DNA polymerase delta catalytic subunit
gi|3875739|emb|CAB04077.1| Protein F10C2.4 [Caenorhabditis elegans]
Length = 1081
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 202/405 (49%), Gaps = 62/405 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+M +N + +A ++T V N L L G+ + ++L + ++ LP
Sbjct: 495 KLMSIINYIEMA-RVTGVPMNFL---LTKGQQIKILSMMLRRCKQNNFFLP--------- 541
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
EAN G G Y G V++P +GFY++ I +DF SLYPSI+ +N+C+TT+
Sbjct: 542 ----VIEANSGDGE---GYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLL 594
Query: 537 --PVRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL-- 591
P + + I T +Y G+LP ++ ++ +R++ K MK D
Sbjct: 595 KSPQGVENEDYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKN---EKDEFKR 651
Query: 592 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL----- 646
M Y+ RQ ALK++ANS+YG G + ++ VTA GR+++ TK VE +
Sbjct: 652 MVYNGRQLALKISANSVYGFTGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGA 711
Query: 647 -------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKY 698
+ +VIYGDTDS+M+ V +IG E +K++ ++L+ + VY
Sbjct: 712 LDGKCPADAKVIYGDTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSP 771
Query: 699 MLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DE 754
LL+ KK+YA L +K + KM C KG++ VRRD L ++ + ++L D+
Sbjct: 772 YLLINKKRYAGLYFTKPDVHDKMDC----KGLETVRRDNCPLVAKVLGVCLEKLLIERDQ 827
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
QS D++ K+ +DL + ++LL I+K+LTK+
Sbjct: 828 QSALDFA------------KRTISDLLCNKIDISLLIISKELTKS 860
>gi|71406868|ref|XP_805939.1| DNA polymerase delta catalytic subunit [Trypanosoma cruzi strain CL
Brener]
gi|70869536|gb|EAN84088.1| DNA polymerase delta catalytic subunit, putative [Trypanosoma
cruzi]
Length = 833
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 173/336 (51%), Gaps = 42/336 (12%)
Query: 487 KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---------P 537
G G + Y G V+EP KGFY+ I+ +DF SLYPSII +N+C++T+ P
Sbjct: 500 SGGGGDQRGYEGATVIEPLKGFYNCPIVTLDFASLYPSIIIAHNLCYSTLVRPSDIVRYP 559
Query: 538 VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI- 596
ML T + + ++ GILP ++ L+ +R++ K+LMK + S ++Y +
Sbjct: 560 AEMLSR---TPTGDTFVKKELFPGILPEVLQDLLAARKRAKSLMKDVPMES---LEYKVL 613
Query: 597 --RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL--NYEVIY 652
RQ ALK++ANS+YG G + +++ VTA GR ++ TK LVE+L +V+Y
Sbjct: 614 NGRQLALKISANSVYGFTGAQVGKLPCLEVSSSVTAYGRLMIDQTKFLVESLYPGVKVVY 673
Query: 653 GDTDSLMISCNVN---------DYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK 703
GDTDS+MI C + +Y F G + + ++L+ + VY LL+
Sbjct: 674 GDTDSVMIKCLTDEKGTEKERLEYAMTFGKGAA-EEVSSHFLNPIKLEFEKVYFPYLLMN 732
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
KK+YA L +N + + KG++ VRRD L + V+++IL ++S
Sbjct: 733 KKRYAGL---LWTNTERYDKLDAKGIETVRRDNCPLVASVISGVLNRILIQRS------- 782
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + E +K DL + ++ L ITK +KA
Sbjct: 783 --VDSAVEFVKGTIRDLLLNRLDISHLVITKTFSKA 816
>gi|383855586|ref|XP_003703291.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Megachile
rotundata]
Length = 1091
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 197/403 (48%), Gaps = 58/403 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC + +++ V G ++ L G+ + LL ++ Y++P G +
Sbjct: 512 KLMCIF----IYMEMARVTGVSIASLLTRGQQIKVVSQLLRKIKDRDYLMP----GHQGQ 563
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G+E Y G V+EPK+G+Y+ I +DF+SLYPSII +N+C+TT+
Sbjct: 564 GGDEQ-------------YEGATVIEPKRGYYNDPIATLDFSSLYPSIIMAHNLCYTTLL 610
Query: 538 VRMLQ-----DSDITTLC---EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
Q D D T + V GILP ++ L+ +R+ KA +K+ +D
Sbjct: 611 NNESQHKYKIDPDNVTRTPSNSMFIKANVRKGILPEILENLLTARKVAKAELKK---ETD 667
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
L Q D RQ ALK++ANS+YG G + ++A VTA GR ++ TK VE+
Sbjct: 668 PLKQKVLDGRQYALKVSANSVYGFTGAQVGKLPCLEISASVTAYGRTMIERTKQEVEDQF 727
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ VIYGDTDS+M+ V + ++G + +K K ++L+ + VY
Sbjct: 728 CVLKGYKNDAVVIYGDTDSVMVKFGVKTIEEAMELGKEAAEYVTSKFLKPIKLEFEKVYF 787
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L
Sbjct: 788 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLL---- 839
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
D + +D L + K+I +DL + ++ L +TK+LTK
Sbjct: 840 -IDRNPNDALN----YAKQIISDLLCNRIDISQLVVTKELTKT 877
>gi|342874671|gb|EGU76649.1| hypothetical protein FOXB_12838 [Fusarium oxysporum Fo5176]
Length = 1054
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/326 (32%), Positives = 167/326 (51%), Gaps = 40/326 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDITTLCEYLP 554
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT + + ++ ++ +Y+
Sbjct: 527 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLVSKKAIEAFNLKKDEDYIV 586
Query: 555 EHQVDT--------GILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
DT G+L +++L+ +R+Q K A+ P + L + RQ ALK+
Sbjct: 587 TPNGDTFVTIKQRKGLLAQILEELLAARKQAKRELAVETDPFKKAVL----NGRQLALKI 642
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGD 654
+ANS+YG G + +A+ T+ GR+++ TK VEN + +VIYGD
Sbjct: 643 SANSVYGLTGATTGKLPCLEIASSTTSFGRKMIEKTKEEVENRYNIANGYSHDAQVIYGD 702
Query: 655 TDSLMISCNVNDYDSVFKIGNQI-KSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+MI D K+G + K K K ++L+ + VY LL+ KK+YA L +
Sbjct: 703 TDSVMIKFGTKDLQEAMKLGEEASKYVSAKFVKPIKLEFEKVYFPYLLINKKRYAGLYWT 762
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
K KM + KG++ VRRD L + V+ IL +D +Q E+
Sbjct: 763 KPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVQGAQEY 809
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K+ DL V ++ L ITK LTK
Sbjct: 810 VKETIADLLQNKVDMSKLVITKALTK 835
>gi|402223554|gb|EJU03618.1| hypothetical protein DACRYDRAFT_93925 [Dacryopinax sp. DJM-731 SS1]
Length = 1097
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 103/335 (30%), Positives = 172/335 (51%), Gaps = 36/335 (10%)
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 544
A K +G + Y G V+EP+KG+YD I +DF+SLYPSI+ +N+C+TT+ + D
Sbjct: 562 AVKSEGSDEVQYEGATVIEPEKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLTKETIDR 621
Query: 545 -DITTLCEYL--PEHQVDT------GILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQ 593
++ +Y+ P H G+LP+ ++ L+ +R++ KA +K+ +D
Sbjct: 622 LNLVEGVDYVKTPNHDYFVTPTRRKGLLPTVLEDLITARKRAKADLKK---ETDPFKRAV 678
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE--------- 644
D RQ ALK++ANS+YG G + +++ VTA GR+++ TK VE
Sbjct: 679 LDGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAYGRDMIEQTKQEVEKEYCIASGK 738
Query: 645 NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLK 703
+ +VIYGDTDS+M+ D + +G + K + ++L+ + VY LL+
Sbjct: 739 EWDAKVIYGDTDSVMVRFGCPDLKTAMALGAEAAEIITAKFVRPIKLEFEKVYFPYLLIS 798
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
KK+YA L +K + S KG++ VRRD +L + + ++L E+
Sbjct: 799 KKRYAGLYWTKAEKWDKMDS---KGIETVRRDNCRLVQTVIETCLHKMLIERD------- 848
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+ E+ K+ +DL + ++ L ITK LTK
Sbjct: 849 --VDGAIEYTKQTISDLLQNKIDMSQLVITKALTK 881
>gi|315042333|ref|XP_003170543.1| DNA polymerase delta catalytic subunit [Arthroderma gypseum CBS
118893]
gi|311345577|gb|EFR04780.1| DNA polymerase delta catalytic subunit [Arthroderma gypseum CBS
118893]
Length = 1112
Score = 135 bits (339), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 198/411 (48%), Gaps = 62/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+PD + +N
Sbjct: 528 KLMCLVNYTEMA-RVTGVPFNFLL-----ARGQQIKFISQLFRKALEQKLVIPDLKNDEN 581
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ Y G V+EP + +Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 582 SNQ----------------QYEGATVIEPVRDYYAVPIATLDFASLYPSIIQAHNLCYTT 625
Query: 536 I----PVRML-----QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQ 583
+ V L +D +T + ++ G+L +++L+ +R++ K A+ K
Sbjct: 626 LLNKRTVEKLGLKKGEDYIVTPNDDMFCTTKIRKGLLSQILEELLTARKRAKRELAIEKD 685
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
P + L + RQ ALK++ANS+YG G N + P+A+ T+ GR+++ TK V
Sbjct: 686 PFKKAVL----NGRQLALKISANSVYGITGATNGKLPCLPIASSTTSYGRQMIEKTKEEV 741
Query: 644 E---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDID 693
E + +VIYGDTDS+M+ D K+G + +K K ++L+ +
Sbjct: 742 EARYTISNGYAHDAKVIYGDTDSVMVKFGTADLAEAMKLGEEAAGFVSSKFMKPIKLEFE 801
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +N + KG++ VRRD L + V+++IL
Sbjct: 802 KVYYPYLLINKKRYAGLF---WTNPTKYDKMDTKGIETVRRDNCLLVQTVIETVLNKIL- 857
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + ++K I +DL V ++ L ITK LTK GK
Sbjct: 858 --------IDRNVNGAETYVKNIISDLLQNKVDMSKLVITKALTKEKYQGK 900
>gi|422294898|gb|EKU22198.1| DNA polymerase delta subunit 1 [Nannochloropsis gaditana CCMP526]
Length = 569
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 175/353 (49%), Gaps = 30/353 (8%)
Query: 486 NKGKGRK-KAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR----- 539
N K R+ + Y G V+EPKK FY I +DF SLYPSI+Q +N+C++T+ R
Sbjct: 38 NLPKNRQDEGTYEGATVIEPKKAFYQDPIATLDFASLYPSIMQAFNLCYSTLLSREEKQA 97
Query: 540 MLQDSDITTLC-EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQ 598
+ S ITT E + V GILP + +L+ +R++ K M + +Q + RQ
Sbjct: 98 LPPSSYITTPSQESFVKPSVRKGILPLILDELLAARKRAKRDMAAATDPMEKAVQ-NGRQ 156
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYE 649
ALK++ANS+YG G + P+A+ VT+ GR++L TK+ VE + N E
Sbjct: 157 LALKISANSVYGFTGATVGQLPCIPIASSVTSYGRDLLYQTKAFVEEHYTIEKGCSANAE 216
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYA 708
V+YGDTDS+M+ V + + + E K++ ++L+ + VY LL+ KK+YA
Sbjct: 217 VVYGDTDSVMVRFGVPTVEEAMPLAERAAEEVTKIFPPPIKLEFEKVYFPYLLMNKKRYA 276
Query: 709 ALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 768
L ++ + + KG++ VRRD L + +IL +D +
Sbjct: 277 GLLWTRPDKYDKL---DTKGLETVRRDNCLLVRRVIDTCLRKIL---------IDRDVPG 324
Query: 769 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRR 821
+ K + +L + ++LL ITK L K+ + Q + R ++R
Sbjct: 325 AIGYCKHVIAELLQNKMDISLLVITKALGKSADESGYAAKQAHVELAMRMKKR 377
>gi|150866455|ref|XP_001386065.2| DNA polymerase delta catalytic subunit (DNA polymerase III)
[Scheffersomyces stipitis CBS 6054]
gi|149387711|gb|ABN68036.2| DNA polymerase delta catalytic subunit (DNA polymerase III)
[Scheffersomyces stipitis CBS 6054]
Length = 1070
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 126/409 (30%), Positives = 201/409 (49%), Gaps = 60/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A V G S L G+ + L E+ V+P+ K
Sbjct: 490 KLMCLVNYTEMA----RVTGVPFSYLLARGQQIKVISQLFRKCLEEDIVIPNM-----KS 540
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT--- 534
EG T E Y G V+EP +G+YD I +DF+SLYPSI+ +N+C+T
Sbjct: 541 EG--TNEE----------YEGATVIEPSRGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL 588
Query: 535 ---TIPVRMLQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LS 587
TI L + D T +Y + GILP+ + +L+ +R++ KA +K+
Sbjct: 589 NIQTIKAFNLTEDDYTRTPNGDYFVKDHKKQGILPTILNELLTARKKAKADLKKETDPFK 648
Query: 588 SDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646
D+L + RQ ALK++ANS+YG G + +++ VTA GRE++ TK+ V+
Sbjct: 649 RDVL---NGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAFGREMIEKTKNEVQEFY 705
Query: 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYK 697
+ +VIYGDTDS+M+ D ++ K+G + + + K K ++L+ + VY
Sbjct: 706 SKKNGYPYDAQVIYGDTDSVMVKFGYQDLETCMKLGEEAANYVSTKFKKPIKLEFEKVYF 765
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM + KG++ VRRD +L VI+++L
Sbjct: 766 PYLLINKKRYAGLYWTRPDKFDKM----DTKGIETVRRDNCRLVQN----VITKVL---- 813
Query: 757 YTDYSLDDR-LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++ L+DR ++ +K+ DL V L+ L ITK K K
Sbjct: 814 --EFILEDRDVEKAQRFVKQTIADLLQNRVDLSQLVITKAYAKHDYAAK 860
>gi|262176855|gb|ACY27482.1| DNA polymerase delta [Xenopus laevis]
Length = 1108
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 193/410 (47%), Gaps = 68/410 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL ++ V+P +
Sbjct: 529 KLMCVINYMEMA----RVTGVPLSYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVRS 579
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT
Sbjct: 580 EGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTT-- 624
Query: 538 VRMLQDSDI------------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
+LQ + T + + V G+LP ++ L+ +R++ K +K+
Sbjct: 625 --LLQSGSVEKYGLNPEDFIKTPTGDCFVKASVRKGLLPEILENLLCARKRAKTELKK-- 680
Query: 586 LSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
+D Q D RQ ALK++ANS+YG G + ++ VT GR+++ TK LV
Sbjct: 681 -ETDPFKQKVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLV 739
Query: 644 EN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDID 693
E+ + +VIYGDTDS+M V ++G + + + ++L+ +
Sbjct: 740 ESKYTLDNGYKADAKVIYGDTDSVMCKLGVQTVAEAMELGREAAEWVSSHFTPPIKLEFE 799
Query: 694 GVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
VY LL+ KK+YA L S +N KM C KG++ VRRD L + + +I
Sbjct: 800 KVYFPYLLINKKRYAGLYFSSSANTHDKMDC----KGIETVRRDNCPLVANLINTCLQKI 855
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +D EH K + +DL + ++ L ITK+LT+ +
Sbjct: 856 L---------IDRDPMGAVEHAKDVISDLLCNRIDISQLVITKELTRTAD 896
>gi|347522849|ref|YP_004780419.1| DNA polymerase Pol2 [Pyrolobus fumarii 1A]
gi|343459731|gb|AEM38167.1| DNA polymerase Pol2 [Pyrolobus fumarii 1A]
Length = 803
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 190/380 (50%), Gaps = 52/380 (13%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP AIQ++ V G L + R E+ L+ A + ++P N+ E
Sbjct: 365 ILPFAIQLSYVTGLPLDQVGAMSVGFRLEWYLIRAAFKMKELVP------NRVE------ 412
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 544
R + Y G +VLEP +G ++ I ++DF+S+YP+I+ +YN+ T+ VR ++
Sbjct: 413 ------RPEETYRGAIVLEPLRGVHEN-IAVLDFSSMYPNIMIKYNVGPDTL-VRPGEEC 464
Query: 545 DITTLCEYLPE-----HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599
C PE + G + +++L+E R++V+A MK+ S D RQK
Sbjct: 465 G-ECGCWEAPEVKHRFRRCPPGFFKTVLERLLELRKRVRAEMKKYPPDSPEYRLLDERQK 523
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
ALK+ AN+ YG +G+ +R++ + A VTA GR ++ ++ L +VIYGDTDSL
Sbjct: 524 ALKVLANASYGYMGWSGARWYCRECAEAVTAWGRHLIRTAINIARKLGLKVIYGDTDSLF 583
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNG 718
++ + + KI I+ E E+ ++ VYK + + KK+YA L L +G
Sbjct: 584 VTYDPEKVEKFIKI---IEEELG-----FEIKLEKVYKRVFFTEAKKRYAGL----LEDG 631
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
++ +I G + VR DW +LA E V+ +L + E+++KI
Sbjct: 632 RI----DIVGFEAVRGDWCELAKEVQTKVVEIVLKTSD---------VNKAVEYVRKIVK 678
Query: 779 DLDNGFVPLTLLEITKQLTK 798
+L+ G VP+ L I K L+K
Sbjct: 679 ELEEGKVPIEKLVIWKTLSK 698
>gi|324120706|dbj|BAJ78744.1| DNA polymerase delta catalytic subunit [Aposthonia japonica]
Length = 1088
Score = 134 bits (338), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 193/410 (47%), Gaps = 64/410 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL +K Y++P
Sbjct: 514 KLMCIINYMEMA----RVTGVSLSCLLTRGQQIKVVSQLLRKARDKGYLMP--------- 560
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G ++ Y G V+EP KG+Y I +DF+SLYPSI+ +N+C+TT
Sbjct: 561 --------TYSGGVQEEQYEGATVIEPLKGYYADPITTLDFSSLYPSIMMAHNLCYTT-- 610
Query: 538 VRMLQ----------DSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN-- 585
+LQ D T + + V G+LP ++ L+ +R++ K +K
Sbjct: 611 --LLQGGTKDKLSPEDYVKTPSQNFFVKESVRKGLLPEILESLLSARKKAKNDLKNETDP 668
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN 645
++L D RQ ALK++ANS+YG G + ++ VTA GR ++ TK +VE
Sbjct: 669 FKKNVL---DGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQVVEQ 725
Query: 646 ---------LNYEVIYGDTDSLMISCNVNDYDSVFKIG-NQIKSECNKLYKQLELDIDGV 695
N VIYGDTDS+M+ V ++G + + +K K ++L+ + V
Sbjct: 726 KYNTENGYKHNAVVIYGDTDSVMVKFGVETLAEAMELGRDAAEYVTSKFVKPIKLEFEKV 785
Query: 696 YKYMLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
Y LL+ KK+YA L ++ + KM C KG++ VRRD + L + + ++L
Sbjct: 786 YFPYLLINKKRYAGLYFTRPEQHDKMDC----KGIETVRRDNAPLVANMMNTCLQKLL-- 839
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D E+ K+I +DL + ++ L ITK+LTK K
Sbjct: 840 -------IDRDPNGAVEYAKQIISDLLCNRIDISQLVITKELTKTDYAAK 882
>gi|320037710|gb|EFW19647.1| DNA polymerase delta catalytic subunit [Coccidioides posadasii str.
Silveira]
Length = 1110
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 203/410 (49%), Gaps = 61/410 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P+ +
Sbjct: 527 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQDLVIPNLK---- 576
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ GEE Y G V+EP K +YD I +DF SLYPSIIQ +N+C+TT
Sbjct: 577 NENGEEQ-------------YKGATVIEPVKDYYDVPIATLDFASLYPSIIQAHNLCYTT 623
Query: 536 I-------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ +++ +D D +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 624 LLNKTSVEKLKLKKDEDYIVTPNGDMFCTSKVRKGLLSQILQELLSARKRAK---KELAV 680
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G N + +A+ T+ GR++++ TK VE
Sbjct: 681 ETDPFKKAVLNGRQLALKISANSVYGITGASNGKLPCLAIASSTTSYGRQMIMKTKDEVE 740
Query: 645 N---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDG 694
+ +VIYGDTDS+M+ V D K+G + + + K + ++L+ +
Sbjct: 741 ARFTMANGYPYDAKVIYGDTDSVMVKFGVKDIAEAMKLGQEAANFVSAKFLEPIKLEFEK 800
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
VY LL+ KK+YA L +N + KG++ VRRD +L + V+ +IL
Sbjct: 801 VYFPYLLINKKRYAGLF---WTNPNKFDKMDSKGIETVRRDNCRLVQTVIETVLKKIL-- 855
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ ++K DL V ++ L ITK L+K+ K
Sbjct: 856 -------IDRDVKGAENYVKDTIADLLQNKVDMSKLVITKALSKSDYSAK 898
>gi|147899700|ref|NP_001087694.1| DNA-directed DNA polymerase delta 1 [Xenopus laevis]
gi|51895814|gb|AAH81093.1| Pold protein [Xenopus laevis]
Length = 1109
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 193/410 (47%), Gaps = 68/410 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL ++ V+P +
Sbjct: 530 KLMCVINYMEMA----RVTGVPLSYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVRS 580
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT
Sbjct: 581 EGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTT-- 625
Query: 538 VRMLQDSDI------------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
+LQ + T + + V G+LP ++ L+ +R++ K +K+
Sbjct: 626 --LLQSGSVEKYGLNPEDFIKTPTGDCFVKASVRKGLLPEILENLLCARKRAKTELKK-- 681
Query: 586 LSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
+D Q D RQ ALK++ANS+YG G + ++ VT GR+++ TK LV
Sbjct: 682 -ETDPFKQKVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLV 740
Query: 644 EN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDID 693
E+ + +VIYGDTDS+M V ++G + + + ++L+ +
Sbjct: 741 ESKYTLDNGYKADAKVIYGDTDSVMCKLGVQTVAEAMELGREAAEWVSSHFTPPIKLEFE 800
Query: 694 GVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
VY LL+ KK+YA L S +N KM C KG++ VRRD L + + +I
Sbjct: 801 KVYFPYLLINKKRYAGLYFSSSANTHDKMDC----KGIETVRRDNCPLVANLINTCLQKI 856
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +D EH K + +DL + ++ L ITK+LT+ +
Sbjct: 857 L---------IDRDPMGAVEHAKDVISDLLCNRIDISQLVITKELTRTAD 897
>gi|156041052|ref|XP_001587512.1| hypothetical protein SS1G_11504 [Sclerotinia sclerotiorum 1980]
gi|154695888|gb|EDN95626.1| hypothetical protein SS1G_11504 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1106
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 169/336 (50%), Gaps = 38/336 (11%)
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PV 538
N + Y G V+EP +G+Y I +DF SLYPSIIQ +N+C+TT+ +
Sbjct: 570 NLSTASSEEQYEGATVIEPTRGYYSVPIATLDFASLYPSIIQAHNLCYTTLLKKDVVEAL 629
Query: 539 RMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQ 593
+ +D D +T + + G+L +++L+ +R+Q K A+ P + L
Sbjct: 630 NLEKDEDYIVTPNGDMFVTTKQRKGLLTQILEELLTARKQAKRELAVETDPFKKAVL--- 686
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE--------- 644
+ RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK+ VE
Sbjct: 687 -NGRQLALKISANSVYGLTGATVGKVPCLPIASSTTSYGRQMIEKTKAEVEAKYTIANGY 745
Query: 645 NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLK 703
+ + +VIYGDTDS+M+ V + K+G + +K K ++L+ + VY LL+
Sbjct: 746 SHDAQVIYGDTDSVMVKFGVKELTEAMKLGEEAAQYVSSKFIKPIKLEFEKVYYPYLLIN 805
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
KK+YA L +N + KG++ VRRD +L + V+ IL +D
Sbjct: 806 KKRYAGL---YWTNPDKYDKMDTKGIETVRRDNCRLVQNVIETVLRMIL---------ID 853
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+Q +++K +DL + ++ L ITK L KA
Sbjct: 854 QDVQGAQDYVKDTISDLLQNKIDMSKLVITKALAKA 889
>gi|324120734|dbj|BAJ78758.1| DNA polymerase delta catalytic subunit [Gynaikothrips ficorum]
Length = 1091
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 122/408 (29%), Positives = 198/408 (48%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L+ L G+ + LL EK +++P Q
Sbjct: 512 KLMCIINYMEMA----RVTGVTLASLLTRGQQIKVMSQLLRKAREKDFIMPTYQ------ 561
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
TG ++ Y G V+EPK+G+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 562 ---STGGDDQ--------YEGATVIEPKRGYYADPISTLDFSSLYPSIMMAHNLCYTTLL 610
Query: 538 V-----RMLQDSDI---TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ R+ +D T + + V G+LP + L+ +R++ K+ +K D
Sbjct: 611 LGNAKERLGLSADQYSKTPANNFFVKPSVRKGLLPEILDDLLSARKKAKSDLKN---EKD 667
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK+ VE
Sbjct: 668 PFKQRVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKTNVEEKY 727
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYK 697
+ VIYGDTDS+M+ V + ++G + +K K ++L+ + VY
Sbjct: 728 RIENGYKHDAVVIYGDTDSVMVKFGVKTLEEAMELGREAAEFVTSKFIKPIKLEFEKVYF 787
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD S L + + ++L
Sbjct: 788 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNSPLVANMMNTCLQKLL---- 839
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
D + DD + + K + +DL + ++ L ITK+LTK+ K
Sbjct: 840 -IDRNPDDAV----AYAKSVISDLLCNRIDISQLVITKELTKSDYAAK 882
>gi|198429892|ref|XP_002125320.1| PREDICTED: similar to Polymerase (DNA directed), delta 1, catalytic
subunit [Ciona intestinalis]
Length = 1064
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 173/329 (52%), Gaps = 40/329 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDI--------T 547
++G V++P KG+Y++ I +DF+SLYPSI+Q +N+C+TT+ + ++ D+ T
Sbjct: 541 FTGATVIDPIKGYYNQPITTLDFSSLYPSIMQAHNLCYTTLLRKNSKEKDLLGPEDFIKT 600
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM---KQPNLSSDLLMQYDIRQKALKLT 604
+Y + V G+LP ++ L+ +R KALM K P S L D RQ ALK++
Sbjct: 601 PSGDYFVKASVRKGLLPGILESLLTARTNAKALMKVEKDPFKRSVL----DGRQLALKIS 656
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
NS+YG G + ++ VTA GR ++ TK VE + + +VIYGDT
Sbjct: 657 CNSVYGFTGAQIGKLPCLEISGSVTAFGRMMIEQTKQHVETQYTVENGYSHDAKVIYGDT 716
Query: 656 DSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ V+ +G + S +K K ++L+ + VY LL+ KK+YA L S
Sbjct: 717 DSVMVKFGVSTVAESMVLGKEAASFVSDKFVKPIKLEFEKVYYPYLLINKKRYAGLYFSS 776
Query: 715 LS--NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
S + K+ C KG++ VRRD + L + +IS L E+ D + H
Sbjct: 777 SSEVHDKIDC----KGIETVRRDNAPLTAN----LISTCL-EKLLVGRDPDGAV----AH 823
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
K++ +DL + ++ L ITK+LTK E
Sbjct: 824 AKEVISDLLCNRIDISQLIITKELTKTKE 852
>gi|240147781|gb|ACS45127.1| POL1-like protein [Glomus etunicatum]
gi|240147784|gb|ACS45128.1| POL1-like protein [Glomus etunicatum]
gi|240147786|gb|ACS45129.1| POL1-like protein [Glomus etunicatum]
gi|240147790|gb|ACS45131.1| POL1-like protein [Glomus etunicatum]
gi|240147792|gb|ACS45132.1| POL1-like protein [Glomus etunicatum]
gi|240147794|gb|ACS45133.1| POL1-like protein [Glomus etunicatum]
gi|240147796|gb|ACS45134.1| POL1-like protein [Glomus etunicatum]
gi|240147800|gb|ACS45136.1| POL1-like protein [Glomus etunicatum]
gi|240147802|gb|ACS45137.1| POL1-like protein [Glomus etunicatum]
gi|240147804|gb|ACS45138.1| POL1-like protein [Glomus etunicatum]
gi|240147806|gb|ACS45139.1| POL1-like protein [Glomus etunicatum]
Length = 117
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S++ Q DIRQKALKLTANSMYGCLGF NSRF+A+PLA L+T KGR
Sbjct: 2 RKYVKGLMADPKASAEY-AQLDIRQKALKLTANSMYGCLGFTNSRFYAKPLAVLITTKGR 60
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
EIL +T L E + EVIYGDTDS+MI+ N ++ ++G +K + NK YK LE+
Sbjct: 61 EILQDTVDLAEKESMEVIYGDTDSIMINTNTSEMQKALEVGKILKEKVNKRYKLLEI 117
>gi|327276010|ref|XP_003222764.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Anolis
carolinensis]
Length = 1100
Score = 134 bits (337), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 119/406 (29%), Positives = 192/406 (47%), Gaps = 64/406 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL +++ V+P K
Sbjct: 521 KLMCVINYMEMA----RVTGVPLSYLLARGQQIKVVSQLLRQAVKQNLVMP-----VVKS 571
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT
Sbjct: 572 EGGED-------------YAGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTT-- 616
Query: 538 VRMLQDSDI------------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
+LQ + T ++ + V G+LP ++ L+ +R++ K +KQ
Sbjct: 617 --LLQQGAVERHGLSADKFIRTPTGDHFVKASVRKGLLPEILENLLAARKRAKTELKQ-- 672
Query: 586 LSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
+D D RQ ALK++ANS+YG G + ++ VT GR+++ TK LV
Sbjct: 673 -ETDPFKRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLV 731
Query: 644 E---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDID 693
E + + +V+YGDTDS+M V +IG + + + + ++L+ +
Sbjct: 732 ESKYTIANGYSADAKVVYGDTDSVMCRLGVPSVAEAMEIGREAAAWVSSHFIPPIKLEFE 791
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L S SN + KG++ VRRD L + + ++L
Sbjct: 792 KVYFPYLLINKKRYAGLYFS--SNPDTHDKMDCKGIETVRRDNCPLVANLINTCLQKLL- 848
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+D H K++ +DL V ++ L ITK+LT+
Sbjct: 849 --------IDRDPAGAVAHAKEVISDLLCNRVDISQLVITKELTRT 886
>gi|324120692|dbj|BAJ78737.1| DNA polymerase delta catalytic subunit [Thermobia domestica]
Length = 1097
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 198/408 (48%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL EK +V+P Y +
Sbjct: 519 KLMCLINYMEMA----RVTGVPLSSLLTRGQQIKVVSQLLRKAREKDFVIP--TYSGTTQ 572
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
E + Y G V+EPKKG+YD I +DF+SLYPSI+ +N+C+T++
Sbjct: 573 EEQ---------------YEGATVIEPKKGYYDIPIATLDFSSLYPSIMMAHNLCYTSLL 617
Query: 537 -P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
P + + D T + + V G+LP ++ L+ +R++ KA +K +D
Sbjct: 618 QPGMKEKLGLTPDQYTRTPAGNFFIKPSVRKGLLPEILENLLAARKKAKADLKN---ETD 674
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
L + D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 675 PLRRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQRY 734
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ VIYGDTDS+MI + + ++G + +K K ++L+ + VY
Sbjct: 735 CVANGYPHDAVVIYGDTDSVMIKFGIKTLEEAMELGKEAAEYVSSKFIKPIKLEFEKVYF 794
Query: 698 YMLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +K + KM C KG++ VRRD L + + ++L +
Sbjct: 795 PYLLISKKRYAGLYFTKTDTYDKMDC----KGLETVRRDNCPLVANMMNTCLQKMLINRD 850
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
D +L + K++ DL + ++ L +TK+LTK+ K
Sbjct: 851 -PDGAL--------AYAKQVIADLLCNRIDISQLVVTKELTKSDYAAK 889
>gi|340623568|ref|YP_004742021.1| DNA polymerase Pol2 [Methanococcus maripaludis X1]
gi|339903836|gb|AEK19278.1| DNA polymerase Pol2 [Methanococcus maripaludis X1]
Length = 784
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 117/401 (29%), Positives = 195/401 (48%), Gaps = 44/401 (10%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL I + V L S+ E+LLL ++ + P++ GK ++
Sbjct: 335 LPLEIMFSRVVNQSLYDINRMSSSQMVEYLLLKNSYKMGVIAPNRPSGKEYQK------- 387
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R +++Y GG V EP KG ++ I+ MDF SLYPSII +N+ TI D +
Sbjct: 388 -----RIRSSYEGGYVKEPLKGIHED-IVSMDFLSLYPSIIMSHNLSPETIDCTCCSDEE 441
Query: 546 ITTLCEYLPEHQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY---DIRQK 599
E L H+ GI+P + L+ R++VK ++++ + +Y D Q+
Sbjct: 442 NGENEEILG-HKFCKKSIGIIPKTLMDLINRRKKVKKVLREKAEKGEFDEEYQILDYEQR 500
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
++K+ ANS YG L FP +R++++ A + T GR+ + T EN ++VIY DTD
Sbjct: 501 SIKVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEEAENFGFKVIYADTDGFY 560
Query: 660 ISCNVNDYDSVF------KIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
S +D + + K +K+ N L ++EL+ +G +K + + KKKYA +
Sbjct: 561 -SKWADDKEKLSKDELLEKTREFLKNINNTLPGEMELEFEGYFKRGIFVTKKKYALID-- 617
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
N K+ +KG++VVRRDWS ++ K V++ +L E S ++N + +
Sbjct: 618 --ENEKIT----VKGLEVVRRDWSNVSKNTQKNVLNALLKEGS---------VENAKKVI 662
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSR 814
+ +L +G V L I QLTK E K + +++
Sbjct: 663 QDTIKELKDGKVNNEDLLIHTQLTKRIEDYKTTAPHVEVAK 703
>gi|324120714|dbj|BAJ78748.1| DNA polymerase delta catalytic subunit [Euconocephalus varius]
Length = 1035
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 119/411 (28%), Positives = 193/411 (46%), Gaps = 64/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L+ L G+ + LL E++Y++P G +
Sbjct: 459 KLMCIINYMEMA----RVTGVSLASLLTRGQQIKVVSQLLRKARERNYLMPAYSAGVQED 514
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
+ Y G V+EPKKG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 515 Q-----------------YEGATVIEPKKGYYSDPIATLDFSSLYPSIMMAHNLCYTTLL 557
Query: 537 ------PVRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ + D T + + V G+LP ++ L+ +R++ KA +K+ D
Sbjct: 558 QGGVKENLGLTPDQYTKTPASNFFVKGSVRKGLLPEILENLLSARKKAKADLKE---EKD 614
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE--- 644
Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 615 PFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQRY 674
Query: 645 ------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYK 697
+ VIYGDTDS+M+ V + +G + +K K ++L+ + VY
Sbjct: 675 SVANGYQHDASVIYGDTDSVMVKFGVKTLEEAMSLGREAAEFVTSKFVKPIKLEFEKVYF 734
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---D 753
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L D
Sbjct: 735 PYLLINKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLLIDRD 790
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
DY+ K++ +DL + ++ L +TK+LTK+ K
Sbjct: 791 PNGAVDYA------------KQVISDLLCNRIDVSQLVVTKELTKSDYAAK 829
>gi|159904917|ref|YP_001548579.1| DNA polymerase Pol2 [Methanococcus maripaludis C6]
gi|159886410|gb|ABX01347.1| DNA polymerase Pol2 [Methanococcus maripaludis C6]
Length = 781
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 194/396 (48%), Gaps = 37/396 (9%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL I + V L S+ E+LLL + K + P++ GK ++
Sbjct: 335 LPLEIMFSRVVNQSLYDINRMSSSQMVEYLLLKNSYNKGVIAPNRPSGKEYQK------- 387
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R +++Y GG V EP KG ++ I+ MDF SLYPSII +N+ TI + +
Sbjct: 388 -----RIRSSYEGGYVKEPIKGIHED-IVSMDFLSLYPSIIMSHNLSPETIDCDCCNNEE 441
Query: 546 ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY---DIRQKALK 602
+ + GI+P + L++ R+ VK ++++ +++ +Y D Q+++K
Sbjct: 442 NEEEILGHKFCKKNIGIIPKTLMDLIDRRKSVKKILREKAKNNEFDEEYQILDYEQRSIK 501
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC 662
+ ANS YG L FP +R++++ A + T GR+ + T EN ++VIY DTD
Sbjct: 502 VLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEEAENFGFKVIYADTDGFYSKW 561
Query: 663 ----NVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
+ + + K +K+ +KL ++EL+ +G +K + + KKKYA + N
Sbjct: 562 ANGEKLTKDELLEKTKTFLKTINDKLPGEMELEFEGYFKRGIFVTKKKYALID----ENE 617
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
K+ +KG++VVRRDWS ++ K V++ +L E + ++N + ++
Sbjct: 618 KI----TVKGLEVVRRDWSNVSKNTQKSVLNALLKEGN---------VENAKKVIQDTIK 664
Query: 779 DLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSR 814
+L +G V L I QLTK E K + +++
Sbjct: 665 ELKDGKVNKEDLLIHTQLTKRIEDYKTTSPHVEVAK 700
>gi|303314745|ref|XP_003067381.1| DNA polymerase delta catalytic subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240107049|gb|EER25236.1| DNA polymerase delta catalytic subunit, putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 1110
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 201/410 (49%), Gaps = 61/410 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P+ +
Sbjct: 527 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQDLVIPNLK---- 576
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ GEE Y G V+EP K +YD I +DF SLYPSIIQ +N+C+TT
Sbjct: 577 NENGEEQ-------------YKGATVIEPVKDYYDVPIATLDFASLYPSIIQAHNLCYTT 623
Query: 536 I-------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ +++ +D D +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 624 LLNKTSVEKLKLKKDEDYIVTPNGDMFCTSKVRKGLLSQILQELLSARKRAK---KELAV 680
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G N + +A+ T+ GR++++ TK VE
Sbjct: 681 ETDPFKKAVLNGRQLALKISANSVYGITGASNGKLPCLAIASSTTSYGRQMIMKTKDEVE 740
Query: 645 N---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDG 694
+ +VIYGDTDS+M+ V D K+G + + K + ++L+ +
Sbjct: 741 ARFTMANGYPYDAKVIYGDTDSVMVKFGVKDIAEAMKLGQEAADFVSAKFLEPIKLEFEK 800
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
VY LL+ KK+YA L +N + KG++ VRRD +L + V+ +IL
Sbjct: 801 VYFPYLLINKKRYAGLF---WTNPNKFDKMDSKGIETVRRDNCRLVQTVIETVLKKIL-- 855
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + ++K DL V ++ L ITK L+K+ K
Sbjct: 856 -------IDRDVNGAENYVKDTIADLLQNKVDMSKLVITKALSKSDYSAK 898
>gi|410720|gb|AAB28217.1| DNA polymerase alpha, DNAPol alpha [Plasmodium falciparum, K1,
Peptide, 1855 aa]
Length = 1855
Score = 134 bits (336), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/251 (38%), Positives = 149/251 (59%), Gaps = 18/251 (7%)
Query: 561 GILPSEIKKLVESRRQVKALMKQPNLSS--DLLMQYDIRQKALKLTANSMYGCLGFPNSR 618
GILP +K LVE R +K L+ +LL+ I+ ++KL +NS+YGCLG N+R
Sbjct: 1150 GILPCILKSLVEKRSVIKKLISNEKNKEKKELLL---IQSLSIKLISNSIYGCLGNTNNR 1206
Query: 619 FFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISC-----NVNDYDSVFK 672
F+A+ LA+ +T+KGR +L +TK VE N +VIYGDTDS+MI N+N+Y FK
Sbjct: 1207 FYAKHLASYITSKGRNLLQHTKFKVEKEFNLKVIYGDTDSIMIDTGIKANNINNYKESFK 1266
Query: 673 IGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVV 732
+ + IK+ NK YK+LELD++ ++ +LLLKKKKYA + + N E+KG++ +
Sbjct: 1267 LAHLIKNSINKNYKKLELDLECIFSKLLLLKKKKYACAKV--IDNNLEKYEYEMKGINFI 1324
Query: 733 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN-----IHEHMKKIRTDLDNGFVPL 787
+RD+S+++ G V+ I + ++ L+N IHE+++ I + N L
Sbjct: 1325 KRDFSKISKLIGNEVLRIIFTNRDVDSKNIPVPLENDLSEQIHEYLRTINQRIQNDEFDL 1384
Query: 788 TLLEITKQLTK 798
ITK+LTK
Sbjct: 1385 DYYIITKKLTK 1395
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 432 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGR 491
+T + G + R+L+ SER EF LLH +++K ++ P K+ + E N+ K +
Sbjct: 968 LTKLSGYIWMRSLLCYTSERVEFFLLHEYNKKKFITPLI------KKRTKKIETNQMKNK 1021
Query: 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR 539
A Y GGLVL+P G+YD F++ +DFNSLYPSII EYN+CF+T+ ++
Sbjct: 1022 NTAKYLGGLVLDPLCGYYDTFVLYLDFNSLYPSIIIEYNVCFSTLKLK 1069
Score = 43.1 bits (100), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 15/174 (8%)
Query: 222 DIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLL--------PRSEHLKTKEPV 273
DI K ++ LFGK K + S + ++N+DR Y L E +K
Sbjct: 341 DICKHRNSIILFGKTLTKFK-KYKSISIFIENLDRYYYFLLNKNKVYYENGEEIKFNHEK 399
Query: 274 SIAQVYSEFDQ---IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
+ SEF + I +Y + KI K+ NL D Y++V YS +
Sbjct: 400 FKIHIMSEFLEEFKIIREYHNIKMAKYKIVKRKNLNLSSYDD-ELYIKVLYSYNNDPIHE 458
Query: 331 DLS-GDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP-SRISWCKYEV 382
G ++ + +EN ++++ K P W++ K S +++C ++
Sbjct: 459 KFQKGSSYLSFYCCNEDIVENFIIKKNFKLPCWIKIKNLRKNDLSNLTYCYFDC 512
>gi|255731752|ref|XP_002550800.1| DNA polymerase delta catalytic subunit [Candida tropicalis
MYA-3404]
gi|240131809|gb|EER31368.1| DNA polymerase delta catalytic subunit [Candida tropicalis
MYA-3404]
Length = 1079
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 164/300 (54%), Gaps = 34/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IPVRMLQDSDITTL 549
Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT I L + D T
Sbjct: 556 YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNKKSIQAYGLTEDDYTKT 615
Query: 550 C--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 605
+Y + + GILP+ + +L+ +R++ KA +K+ D+L + RQ ALK++A
Sbjct: 616 PNGDYFVKSSLRQGILPTILNELLTARKKAKADLKKETDPFKKDVL---NGRQLALKISA 672
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + +++ VTA GRE++ TK++V++ + +VIYGDTD
Sbjct: 673 NSVYGFTGATIGKLPCLAISSSVTAFGREMIEKTKNVVQDYYSKKNGHPYDAKVIYGDTD 732
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D ++ K+G + + + +K ++L+ + VY LL+ KK+YA L ++
Sbjct: 733 SVMVCFGYEDLETCMKLGEEAANYVSTKFKDPIKLEFEKVYFPYLLINKKRYAGLYWTRP 792
Query: 716 SN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS------YTDYSLDDRLQN 768
KM + KG++ VRRD +L V+ IL+E+ + ++ D LQN
Sbjct: 793 EKFDKM----DTKGIETVRRDNCRLVQNVVTKVLEFILEERDVGKAERFVKQTIADLLQN 848
>gi|124802365|ref|XP_001347450.1| DNA polymerase delta catalytic subunit [Plasmodium falciparum 3D7]
gi|232011|sp|P30315.1|DPOD1_PLAFK RecName: Full=DNA polymerase delta catalytic subunit
gi|23495030|gb|AAN35363.1|AE014831_39 DNA polymerase delta catalytic subunit [Plasmodium falciparum 3D7]
gi|9941|emb|CAA44289.1| DNA Polymerase delta [Plasmodium falciparum]
gi|160270|gb|AAA29589.1| DNA polymerase-delta [Plasmodium falciparum]
Length = 1094
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 181/329 (55%), Gaps = 43/329 (13%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTL- 549
Y G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ V LQ+ DITT+
Sbjct: 577 YEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQ 636
Query: 550 ----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKALKL 603
+++ ++ V GILP +++L+E+R++VK L+K + N++ M + RQ ALK+
Sbjct: 637 GKNNLKFVKKN-VKKGILPLIVEELIEARKKVKLLIKNEKNNITK---MVLNGRQLALKI 692
Query: 604 TANSMYGCLGFPN-SRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIYG 653
+ANS+YG G + + +A +T GR ++ TK VE+ N VIYG
Sbjct: 693 SANSVYGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYG 752
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNK-LYKQLELDIDGVYKYMLLLKKKKYAALSI 712
DTDS+M+ N+ + +G +K ++L+ + VY LLL KK+YA L
Sbjct: 753 DTDSVMVKFGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLLY 812
Query: 713 SKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+ + + KM C KG++ VRRD+ L + + V++++L E++ L + E
Sbjct: 813 TNPNKHDKMDC----KGIETVRRDFCILIQQMMETVLNKLLIEKN---------LNSAIE 859
Query: 772 HMK-KIRTDLDNGFVPLTLLEITKQLTKA 799
+ K KI+ L N + ++LL +TK L K
Sbjct: 860 YTKSKIKELLTNN-IDMSLLVVTKSLGKT 887
>gi|146304901|ref|YP_001192217.1| DNA polymerase II [Metallosphaera sedula DSM 5348]
gi|145703151|gb|ABP96293.1| replicative DNA polymerase I [Metallosphaera sedula DSM 5348]
Length = 783
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/350 (30%), Positives = 178/350 (50%), Gaps = 48/350 (13%)
Query: 431 QITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKG 490
Q+T + G L + M R E+LL+ + + ++P N+ E
Sbjct: 362 QLTVISGLPLDQLCMASVGHRVEWLLMRQAKQFNELIP------NRVE------------ 403
Query: 491 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLC 550
R+ Y GGLV+EPK G ++ +L DF+S+YPSI+ +YNI T+ D +
Sbjct: 404 RRYEGYKGGLVIEPKPGLHENVAVL-DFSSMYPSIMIKYNIGPDTLVQGECNDCWVAPEV 462
Query: 551 EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG 610
Y VD G S + L+E RR+ K M Q + + D RQ+ALK+ AN+MYG
Sbjct: 463 GYKFRKDVD-GFYRSILNFLLEERRKTKDQMSQAKDEYEK-RRLDERQRALKIMANAMYG 520
Query: 611 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSV 670
+G+ +R++++ A VTA GR+ ++ + +N +EVIYGDTDS+ + ++
Sbjct: 521 YMGWLGARWYSKEGAEAVTAWGRQTIMTAAEIAKNSGFEVIYGDTDSIFVKGDM------ 574
Query: 671 FKIGNQIKSECNKLYKQLELDI--DGVYKYMLLLK-KKKYAALSISKLSNGKMICSQEIK 727
+ ++ K+ + L+LDI D YK + + KK+YA L+ +GK+ +I
Sbjct: 575 ----SSVELLTQKIVQALDLDIKVDKKYKKVFFTENKKRYAGLTF----DGKI----DIV 622
Query: 728 GVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 777
G + +R DW +LA + + VI +IL + +DD ++ E + K++
Sbjct: 623 GFEAIRGDWCELAKDTQRMVIERILLK------GVDDAVKAAKEVIMKVK 666
>gi|124505377|ref|XP_001351430.1| DNA polymerase alpha [Plasmodium falciparum 3D7]
gi|8248757|emb|CAB62892.2| DNA polymerase alpha [Plasmodium falciparum 3D7]
Length = 1912
Score = 134 bits (336), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 149/251 (59%), Gaps = 18/251 (7%)
Query: 561 GILPSEIKKLVESRRQVKALMKQPNLSS--DLLMQYDIRQKALKLTANSMYGCLGFPNSR 618
GILP +K LVE R +K L+ +LL+ I+ ++KL +NS+YGCLG N+R
Sbjct: 1207 GILPCILKSLVEKRSVIKKLISNEKNKEKKELLL---IQSLSIKLISNSIYGCLGNTNNR 1263
Query: 619 FFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISC-----NVNDYDSVFK 672
F+A+ +A+ +T+KGR +L +TK VE N +VIYGDTDS+MI N+N+Y FK
Sbjct: 1264 FYAKHIASYITSKGRNLLQHTKFKVEKEFNLKVIYGDTDSIMIDTGIKANNINNYKESFK 1323
Query: 673 IGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVV 732
+ + IK+ NK YK+LELD++ ++ +LLLKKKKYA + + N E+KG++ +
Sbjct: 1324 LAHLIKNSINKNYKKLELDLECIFSKLLLLKKKKYACAKV--IDNNLEKYEYEMKGINFI 1381
Query: 733 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN-----IHEHMKKIRTDLDNGFVPL 787
+RD+S+++ G V+ I + ++ L+N IHE+++ I + N L
Sbjct: 1382 KRDFSKISKLIGNEVLRIIFTNRDVDSKNIPVPLENDLSEQIHEYLRTINQRIQNDEFDL 1441
Query: 788 TLLEITKQLTK 798
ITK+LTK
Sbjct: 1442 DYYIITKKLTK 1452
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 432 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGR 491
+T + G + R+L+ SER EF LLH +++K ++ P K+ + E N+ K +
Sbjct: 1025 LTKLSGYIWMRSLLCYTSERVEFFLLHEYNKKKFITPLI------KKRTKKIETNQMKNK 1078
Query: 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR 539
A Y GGLVL+P G+YD F++ +DFNSLYPSII EYN+CF+T+ ++
Sbjct: 1079 NTAKYLGGLVLDPLCGYYDTFVLYLDFNSLYPSIIIEYNVCFSTLKLK 1126
Score = 43.5 bits (101), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 18/189 (9%)
Query: 207 ENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLL----- 261
EN +F ++ DI K ++ LFGK K + S + ++N+DR Y L
Sbjct: 388 ENNNLFVNVYV---FDICKHRNSIILFGKTLTKFK-KYKSISIFIENLDRYYYFLLNKNK 443
Query: 262 ---PRSEHLKTKEPVSIAQVYSEFDQ---IATQYKILDFKSRKIEKKYAFNLPGVPDLSE 315
E +K + SEF + I +Y + KI K+ NL D
Sbjct: 444 VYYENGEEIKFNHEKFKIHIMSEFLEEFKIIREYHNIKMAKYKIVKRKNLNLSSYDD-EL 502
Query: 316 YLEVRYSAKCPALPSDLS-GDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP-S 373
Y++V YS + G ++ + +EN ++++ K P W++ K S
Sbjct: 503 YIKVLYSYNNDPIHEKFQKGSSYLSFYCCNEDIVENFIIKKNFKLPCWIKIKNLRKNDLS 562
Query: 374 RISWCKYEV 382
+++C ++
Sbjct: 563 NLTYCYFDC 571
>gi|402085670|gb|EJT80568.1| DNA polymerase delta catalytic subunit [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 1104
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 167/326 (51%), Gaps = 40/326 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRMLQDSD--I 546
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT+ ++ +D D +
Sbjct: 577 YEGATVIEPTRGYYDAPIATLDFASLYPSIMQAHNLCYTTLISQKAIDAFKLEKDEDYTV 636
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + + G+L +++L+ +R+Q K A+ P + L + RQ ALK+
Sbjct: 637 TPTGDMFVTVKRRKGLLAQILEELLSARKQAKRELAVETDPFKKAVL----NGRQLALKI 692
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G N +F +A+ T+ GR+++ TK VE + + +VIYGD
Sbjct: 693 SANSVYGLTGATNGKFPCLQIASSTTSYGRQMIEKTKQEVEAKYRIANGYSHDAQVIYGD 752
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D K+G + +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 753 TDSVMVKFGTKDLAEAMKLGEEAAQYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT 812
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
K KM + KG++ VRRD L + V+ IL +D + ++
Sbjct: 813 KPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVLGAQDY 859
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K+ DL V ++ L ITK LTK
Sbjct: 860 VKETIADLLQNKVDMSKLVITKALTK 885
>gi|240147849|gb|ACS45160.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DIRQKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMADPRESASY-ARVDIRQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKSLKELVNKQYKLLEI 118
>gi|429965585|gb|ELA47582.1| DNA polymerase (pol2) [Vavraia culicis 'floridensis']
Length = 1168
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 150/260 (57%), Gaps = 21/260 (8%)
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K +G +E + G K Y G V+EP++G+YD+ I ++DF SLYPSII +
Sbjct: 536 KIFGLILREARKNGFVIPNVTVKDEGYMGAFVIEPERGYYDEPIAVLDFASLYPSIIIAH 595
Query: 530 NICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ 583
N+C++T+ + +D++I+ Y + V G+LP ++K+++ R++VK MK
Sbjct: 596 NLCYSTMLLGTKHGIDKSKDAEISPTGTYFVKKDVRVGLLPVILEKMLKKRKEVKEQMKN 655
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
++ + + RQ A K++ANS+YG G SR ++ VT GRE+++ TK++V
Sbjct: 656 ET-NTFMRTLLNARQNAFKVSANSVYGFTGSAVSRLPCIDISQSVTGYGREMIIKTKNVV 714
Query: 644 ENL-----NYE----VIYGDTDSLMISC---NVNDYDSVFKIGNQIKSECNKLY-KQLEL 690
E++ Y+ VIYGDTDS+MI N++ D VF+I ++ S+ ++ + K ++L
Sbjct: 715 ESVFCRDKGYDFDGRVIYGDTDSVMIRIRKENLS-VDYVFEIAKEMASKVSECFVKPVKL 773
Query: 691 DIDGVYKYMLLLKKKKYAAL 710
+ + VY LL+ KK+YA +
Sbjct: 774 EFEKVYFPYLLMNKKRYAGV 793
>gi|119482197|ref|XP_001261127.1| DNA polymerase delta large chain [Neosartorya fischeri NRRL 181]
gi|119409281|gb|EAW19230.1| DNA polymerase delta large chain [Neosartorya fischeri NRRL 181]
Length = 1105
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 201/405 (49%), Gaps = 62/405 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +FL L E+ V+P N
Sbjct: 523 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFLSQLFRKALEQQLVIP------N 570
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K +E Y G V+EP +G+Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 571 MKSTDEQD------------YEGATVIEPSRGYYGVPIATLDFASLYPSIIQAHNLCYTT 618
Query: 536 I-------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ +++ +D D +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 619 LLNKNSVEKLKLKKDEDYIVTPNGDMFCTTKVRKGLLSQILEELLAARKRAK---KELAV 675
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 676 ETDPFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVE 735
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ + +VIYGDTDS+M+ V + + K+G + +K K ++L+ +
Sbjct: 736 ARYTIANGYSHDAKVIYGDTDSVMVKFGVTELEEAMKLGQEAADYVSSKFLKPIKLEFEK 795
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
VY LL+ KK+YA L +N + KG++ VRRD L + V+ +IL E
Sbjct: 796 VYFPYLLINKKRYAGL---YWTNPNKFDKMDTKGIETVRRDNCLLVQNVIETVLHKILIE 852
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +++K+ +DL + ++ L ITK L+KA
Sbjct: 853 RD---------IDGAQDYVKETISDLLQNKIDMSKLVITKALSKA 888
>gi|398408323|ref|XP_003855627.1| DNA polymerase delta catalytic subunit [Zymoseptoria tritici
IPO323]
gi|339475511|gb|EGP90603.1| hypothetical protein MYCGRDRAFT_35747 [Zymoseptoria tritici IPO323]
Length = 1107
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 116/415 (27%), Positives = 207/415 (49%), Gaps = 59/415 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N+L R ++ +F+ L E+ V+P+
Sbjct: 524 KLMCLVNYTEMA-RVTGVPFNMLL-----SRGQQVKFISQLFRKALEQQLVVPNL----- 572
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K EG + Y G V+EP +G+YD + +DF SLYPSI+Q +N+C+TT
Sbjct: 573 KPEGSD------------EQYEGATVIEPTRGYYDVPVATLDFASLYPSIMQAHNLCYTT 620
Query: 536 I-------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQV-KALMKQPN 585
+ + + +D D +T + +V G+L +++L+ +R++ KAL + +
Sbjct: 621 LLNKNAVEKLNLKKDEDYIVTPNGDLFCTTKVRKGLLSQILEELLGARKRAKKALAVETD 680
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN 645
++ + RQ ALK++ANS+YG G N + +A+ T+ GR+++ TK VEN
Sbjct: 681 PFKKAVL--NGRQLALKISANSVYGLTGATNGKLPCLAIASSTTSYGRQMIERTKEEVEN 738
Query: 646 ---------LNYEVIYGDTDSLMISCNVNDYDSVFKIG-NQIKSECNKLYKQLELDIDGV 695
+ +VIYGDTDS+M+ ND ++G + + +K K ++L+ + V
Sbjct: 739 RYTIANGYSHDAQVIYGDTDSVMVKFGPNDLAKAMELGQDAAEYVSSKFIKPIKLEFEKV 798
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
Y LL+ KK+YA L +N + + KG++ VRRD +L + + +L
Sbjct: 799 YYPYLLINKKRYAGL---YWTNTEKYDKMDTKGIETVRRDNCRLVQNVIETSLKMLL--- 852
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQI 810
+D +Q +++K+ ++L + ++ L ITK L+K K T++
Sbjct: 853 ------IDQDVQGAQDYVKETISELLQNRIDMSNLVITKALSKVDYASKQAHTEL 901
>gi|240147816|gb|ACS45144.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S++ Q DIRQKALKLTANSMYGCLGF NSRF+A+PLA L+T KGR
Sbjct: 3 RKYVKGLMADPKASAEY-AQVDIRQKALKLTANSMYGCLGFTNSRFYAKPLAVLITTKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
EIL +T L E + EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 EILQDTVDLAEKESMEVIYGDTDSIMINTNTSEMQKASEIGKILKELVNKQYKSLEI 118
>gi|323528379|ref|YP_004230531.1| DNA polymerase B exonuclease [Burkholderia sp. CCGE1001]
gi|323385381|gb|ADX57471.1| DNA polymerase B exonuclease [Burkholderia sp. CCGE1001]
Length = 794
Score = 133 bits (335), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 170/369 (46%), Gaps = 58/369 (15%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
+ +I + +LP ++ V G R+ GG L + H + YV P+
Sbjct: 348 VTRIFAKTELLPFLLERATVTGLPADRS--GGSVAAFTHLYMPRMHRQGYVAPNV----- 400
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
G+ G AA GG V++ + G YD ++L D+ SLYPSII+ + I
Sbjct: 401 ---GDVAG----------AASPGGFVMDSRPGLYDSVLVL-DYKSLYPSIIRTFLIDPVG 446
Query: 536 IPVRMLQDSDITTLCEYLPEHQVDT-GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
+ ML D ++ +L T LPS + + + R K +P LS
Sbjct: 447 LVEGMLHPGDDESVPGFLGARFSRTRHCLPSIVGHVWQGRETAKREHNKP-LS------- 498
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 654
+ALK+ N+ YG LG RFF LA+ +T +G EI+ T+ L++ YEVIYGD
Sbjct: 499 ----QALKIIMNAFYGVLGSTGCRFFDPRLASSITMRGHEIMHRTRELIQAEGYEVIYGD 554
Query: 655 TDSLMISC-NVNDYDSVFKIGNQIKSECNKLYKQ-----------LELDIDGVYK--YML 700
TDS + + +D D +IG + N ++Q LEL + Y+ +M
Sbjct: 555 TDSTFVWLRHAHDEDDAGRIGRALVEHINAWWRQDLQRRFGLDSALELQFERHYRRFFMP 614
Query: 701 LLK------KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
++ KK+YA L++S + +++ KG++ VR DW+ LA + + + +I +
Sbjct: 615 TIRGAEEGSKKRYAGLTVSADGHEEIV----YKGLETVRTDWTPLAQQFQQELYRRIFTQ 670
Query: 755 QSYTDYSLD 763
Q Y DY D
Sbjct: 671 QPYQDYVRD 679
>gi|240147777|gb|ACS45125.1| POL1-like protein [Glomus etunicatum]
Length = 117
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ QYDI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 2 RKNVKKLMADPRESASY-AQYDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 60
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL +T L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 61 DILQDTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKILKELVNKRYKSLEI 117
>gi|270002921|gb|EEZ99368.1| DNA polymerase delta [Tribolium castaneum]
Length = 1050
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 123/443 (27%), Positives = 208/443 (46%), Gaps = 58/443 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G ++ L G + LL Y +P Q + ++
Sbjct: 476 VEMARVTGVPITSLLTKGEQVKVVAQLLKHARAAGYFMPTHQGAPSSEQ----------- 524
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PV----RMLQD 543
Y G V+EP++G+Y I +DF+SLYPSI+ +N+C+TT+ P L D
Sbjct: 525 ------YEGATVIEPRRGYYTDPIATLDFSSLYPSIMIAHNLCYTTLIKPSIKEKLCLSD 578
Query: 544 SDITTL---CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQ 598
+TT C ++ + V G+LP ++ L+ +R++ KA +K+ ++D +++ D RQ
Sbjct: 579 EQVTTTPANCMFV-KSSVRPGLLPHILQHLLAARKKTKAELKE---ATDPVVRAVLDGRQ 634
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NYE---- 649
A K++ANS+YG G + +++ VTA GR ++ TK VE YE
Sbjct: 635 LAYKISANSVYGFTGAQVGKLPCLEISSSVTAYGRTMIEQTKQEVEQHYRIENGYESDAM 694
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYA 708
VIYGDTDS+M++ V + ++G + + K K ++L+ + VY LL+ KK+YA
Sbjct: 695 VIYGDTDSVMVNFRVKSLERSMELGREAADLISAKFIKPIKLEFEKVYWPYLLINKKRYA 754
Query: 709 ALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
L +K KM C KG++ VRRD L + + ++L +D
Sbjct: 755 GLYFTKPDKYDKMDC----KGIETVRRDNCTLVVDVINSCLRKLL---------IDKDPD 801
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRRRRRKKK 827
+ KK+ +DL V ++ L ITK+LTK K + LS+ R K
Sbjct: 802 GAVNYAKKVISDLLQNNVDISQLVITKELTKNDYAAKQ--AHVELSKKMTKRDPGNAPKL 859
Query: 828 EEKKKWKRRGGGRRRRRGKKEEE 850
++ + G + + +K E+
Sbjct: 860 GDRIPYVIIAGTKNSKAFEKAED 882
>gi|307727351|ref|YP_003910564.1| DNA polymerase B region [Burkholderia sp. CCGE1003]
gi|307587876|gb|ADN61273.1| DNA polymerase B region [Burkholderia sp. CCGE1003]
Length = 791
Score = 133 bits (335), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 111/375 (29%), Positives = 174/375 (46%), Gaps = 70/375 (18%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
+ +I + +LP ++ V G R+ GG L + H + YV P+
Sbjct: 345 VTRIFAKTELLPFLLERATVTGLPADRS--GGSVAAFTHLYMPRMHRQGYVAPNL----- 397
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
G+ G AA GG V++ + G YD ++L D+ SLYPSII+ + I
Sbjct: 398 ---GDVAG----------AASPGGFVMDSRPGLYDSVLVL-DYKSLYPSIIRTFLIDPVG 443
Query: 536 IPVRMLQDSDITTLCEYLP-----EHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 590
+ ML +D ++ +L +H LPS + ++ + R K +P LS
Sbjct: 444 LVEGMLNPADDQSVAGFLGARFSRKHHC----LPSIVGQVWQGRETAKREHNKP-LS--- 495
Query: 591 LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEV 650
+ALK+ N+ YG LG RFF LA+ +T +G EI+ T+ L++ YEV
Sbjct: 496 --------QALKIIMNAFYGVLGSTGCRFFDPRLASSITMRGHEIMHRTRELIQAEGYEV 547
Query: 651 IYGDTDSLMISC-NVNDYDSVFKIGNQIKSECNKLYKQ-----------LELDIDGVYK- 697
IYGDTDS + + +D D +IG + N ++Q LEL + Y+
Sbjct: 548 IYGDTDSTFVWLRHAHDEDEAGRIGRALVDHINAWWRQDLQRRFGLESALELQFERHYRR 607
Query: 698 -YMLLLK------KKKYAALSISKLSNGKMICSQEI--KGVDVVRRDWSQLASEAGKFVI 748
+M ++ KK+YA LS+S +G +QEI KG++ VR DW+ LA + +
Sbjct: 608 FFMPTIRGAEEGSKKRYAGLSVSP--DG----AQEIVYKGLETVRTDWTPLAQRFQQELY 661
Query: 749 SQILDEQSYTDYSLD 763
+I +Q Y DY D
Sbjct: 662 RRIFTQQPYQDYVRD 676
>gi|429852563|gb|ELA27695.1| DNA polymerase delta catalytic subunit [Colletotrichum
gloeosporioides Nara gc5]
Length = 1102
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 52/332 (15%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSDITT 548
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT+ +++D D
Sbjct: 577 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLVNKKAIEKFSLVKDED--- 633
Query: 549 LCEYLPEHQVDT--------GILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIR 597
Y+ DT G+L +++L+ +R+Q K A+ P + L + R
Sbjct: 634 ---YIVTPNGDTFVTVKKRKGLLAQILEELLAARKQAKRELAVETDPFKKAVL----NGR 686
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNY 648
Q ALK++ANS+YG G + +A+ T+ GR++++ TK VE + +
Sbjct: 687 QLALKISANSVYGLTGATTGKLPCLEIASSTTSFGRQMIMKTKEEVEKKYCIANGYSHDA 746
Query: 649 EVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLLLKKKKY 707
+VIYGDTDS+M+ D K+G + +K K ++L+ + VY LL+ KK+Y
Sbjct: 747 QVIYGDTDSVMVKFGTKDLPEAMKLGEEAAGFVSSKFVKPIKLEFEKVYFPYLLINKKRY 806
Query: 708 AALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 766
A L +K KM + KG++ VRRD L + V+ IL +D +
Sbjct: 807 AGLYWTKPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDV 853
Query: 767 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
Q +++K DL V ++ L ITK LTK
Sbjct: 854 QGAQDYVKDTIADLLQNKVDMSKLVITKALTK 885
>gi|324120708|dbj|BAJ78745.1| DNA polymerase delta catalytic subunit [Galloisiana yuasai]
Length = 994
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 194/402 (48%), Gaps = 58/402 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL EK Y++P G +
Sbjct: 418 KLMCIINYMEMA----RVTGVSLSCLLTRGQQIKVVSQLLRKAKEKGYLIPTHNGGVQED 473
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-I 536
+ Y G V+EPK+G+Y I +DF+SLYPSI+ +N+C+TT +
Sbjct: 474 Q-----------------YEGATVIEPKRGYYGDPIATLDFSSLYPSIMMAHNLCYTTLL 516
Query: 537 PVR------MLQDSDITTLCEYL-PEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
PV + QD T L + V G+LP ++ L+ +R++ K +K ++
Sbjct: 517 PVSVKDKLGLTQDQFTKTPSNNLFVKSSVRKGLLPEILESLLSARKKAKNDLKN---ETN 573
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE+
Sbjct: 574 PFKQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEDRY 633
Query: 646 -----LNYE--VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYK 697
Y+ VIYGDTDS+M+ V + +G + + K ++L+ + VY
Sbjct: 634 KIANGFKYDAMVIYGDTDSVMVKFGVKTLEEAMSLGREAAEYVSAKFVSPIKLEFEKVYF 693
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +K + KM C KG++ VRRD S L + + ++L E+
Sbjct: 694 PYLLINKKRYAGLYFTKPDHYDKMDC----KGIETVRRDNSPLVANMMNTCLQKLLIERD 749
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
T ++ K++ +DL + ++ L ITK+L K
Sbjct: 750 PT---------GAVDYAKQVISDLLCNRIDISQLVITKELAK 782
>gi|340502511|gb|EGR29193.1| hypothetical protein IMG5_161090 [Ichthyophthirius multifiliis]
Length = 1092
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 108/334 (32%), Positives = 175/334 (52%), Gaps = 34/334 (10%)
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ- 542
E +KG+G K + G VLEPK+GFY K I +DF SLYPSI+ +N+C++T+ R +
Sbjct: 543 ERSKGQGDK---FEGAFVLEPKRGFYSKPIATLDFASLYPSIMMAHNLCYSTLITRDITL 599
Query: 543 -----DSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YD 595
D T +Y + + GILP +K+L+ +R++ K + Q +D L + D
Sbjct: 600 KMNKDDYTATPNGDYFVKPHIRKGILPEILKELLNARKKAKNDLTQ---ETDPLKKAVLD 656
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV-ENLN----YE- 649
RQ ALK++ANS+YG G + +++ VT+ GR ++ T+ V E+ + YE
Sbjct: 657 GRQLALKISANSVYGFTGAQLGQLPCLQISSSVTSFGRNMIEGTRDFVLEHFSKKNGYEY 716
Query: 650 ---VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKK 704
VIYGDTDS+M+ V +G + S K ++L+ + VY LL+ K
Sbjct: 717 DSDVIYGDTDSVMVQFGVPTIQEAMNLGKEAASLITKKLFINPIKLEFEKVYCPYLLINK 776
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
K+YA L +K I + KG++ VRRD Q+ + + +L E + ++
Sbjct: 777 KRYAGLYFTKPDKYDKI---DTKGMENVRRDNCQMIRDIMNNCLKYVLVEFN------NN 827
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
++ E++K + +DL + ++ L ITK LTK
Sbjct: 828 GVEKAIEYIKGMVSDLYQNKIDISKLVITKSLTK 861
>gi|115387887|ref|XP_001211449.1| DNA polymerase delta catalytic subunit [Aspergillus terreus
NIH2624]
gi|114195533|gb|EAU37233.1| DNA polymerase delta catalytic subunit [Aspergillus terreus
NIH2624]
Length = 1104
Score = 133 bits (334), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 120/406 (29%), Positives = 200/406 (49%), Gaps = 66/406 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P N
Sbjct: 522 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQQLVIP------N 569
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+K +E Y G V+EP +G+Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 570 QKSNDEQD------------YEGATVIEPVRGYYGVPIATLDFASLYPSIIQAHNLCYTT 617
Query: 536 I-------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQ 583
+ + + +D D +T +V G+L +++L+ +R++ K A+
Sbjct: 618 LLNKNSVEKLNLKKDEDYIVTPNGHMFCTTKVRKGLLSQILEELLTARKKAKKDLAIETD 677
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
P + L + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK V
Sbjct: 678 PFKKAVL----NGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEV 733
Query: 644 E---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDID 693
E + + +VIYGDTDS+M+ V+ + K+G + +K K ++L+ +
Sbjct: 734 EARYTIANGYSHDAKVIYGDTDSVMVKFGVSTLEEAMKLGQEASEYVSSKFIKPIKLEFE 793
Query: 694 GVYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
VY LL+ KK+YA L +K KM + KG++ VRRD L + V+ +IL
Sbjct: 794 KVYFPYLLINKKRYAGLYWTKTDKYDKM----DTKGIETVRRDNCLLVQNVIETVLHKIL 849
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+D + E++K+ +DL + ++ L ITK L+K
Sbjct: 850 ---------IDRDIDGAQEYVKETISDLLQNKIDMSKLVITKALSK 886
>gi|324120718|dbj|BAJ78750.1| DNA polymerase delta catalytic subunit [Oyamia lugubris]
Length = 1111
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 124/407 (30%), Positives = 190/407 (46%), Gaps = 67/407 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L G+ + LL EK Y++P Q+
Sbjct: 533 KLMCVINYMEMA----RVTGVSLGSLLTRGQQIKVVSQLLRKAKEKGYLMPTYQH----- 583
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G G ++ + G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT
Sbjct: 584 ---------SGGGDEQ--FEGATVIEPRKGYYSDPIATLDFSSLYPSIMMAHNLCYTT-- 630
Query: 538 VRMLQDSDITTLCEYLPEHQVDT-------------GILPSEIKKLVESRRQVKALMKQP 584
L I E P+ V T G+LP ++ L+ +R+ K +KQ
Sbjct: 631 ---LLQGGIKEKLELTPDQYVKTPAGNFFVTAAVRKGLLPEVLESLLAARKHAKEELKQ- 686
Query: 585 NLSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSL 642
+D Q D RQ ALK++ANS+YG G + +++ VTA GR ++ TK
Sbjct: 687 --ETDPFRQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTAYGRTMIEQTKQE 744
Query: 643 VE-----NLNYE----VIYGDTDSLMISCNVNDYDSVFKIGNQ-IKSECNKLYKQLELDI 692
VE YE VIYGDTDS+M+ V + ++G + K K ++L+
Sbjct: 745 VEQKYSVTNGYEHDAMVIYGDTDSVMVKFGVKTLEEAMELGREAAKFVSEKFVNPIKLEF 804
Query: 693 DGVYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
+ VY LL+ KK+YA L ++ KM C KG++ VRRD L + ++
Sbjct: 805 EKVYFPYLLINKKRYAGLYFTRPDKYDKMDC----KGIETVRRDNCPLVVNVMNMCLQKL 860
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
L D D L + K++ +DL V ++ L +TK+L K
Sbjct: 861 L-----IDRDPDGALL----YAKQVISDLLCNRVDISQLVVTKELAK 898
>gi|291227495|ref|XP_002733722.1| PREDICTED: transmembrane protein 147-like [Saccoglossus
kowalevskii]
Length = 229
Score = 133 bits (334), Expect = 6e-28, Method: Composition-based stats.
Identities = 57/97 (58%), Positives = 73/97 (75%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
ML+LATF P +D SG +D+ G+ +K +ID+ D VG Y V++SI GKG K + AG+GWA
Sbjct: 50 MLVLATFFPASDPISGSLDILGEFMKATIDIADLVGLYFVMTSIAGKGEIKFMVAGMGWA 109
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AE+++TRFL LW GARG EFDWKYIQ S DSNI L+
Sbjct: 110 TAELVMTRFLPLWFGARGVEFDWKYIQMSFDSNISLV 146
>gi|240147798|gb|ACS45135.1| POL1-like protein [Glomus etunicatum]
Length = 117
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S++ Q DIRQKA+KLTANSMYGCLGF NSRF+A+PLA L+T KGR
Sbjct: 2 RKYVKGLMADPKASAEY-AQLDIRQKAVKLTANSMYGCLGFTNSRFYAKPLAVLITTKGR 60
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
EIL +T L E + EVIYGDTDS+MI+ N ++ ++G +K + NK YK LE+
Sbjct: 61 EILQDTVDLAEKESMEVIYGDTDSIMINTNTSEMQKALEVGKILKEKVNKRYKLLEI 117
>gi|407709229|ref|YP_006793093.1| DNA polymerase II [Burkholderia phenoliruptrix BR3459a]
gi|407237912|gb|AFT88110.1| DNA polymerase II [Burkholderia phenoliruptrix BR3459a]
Length = 794
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 170/369 (46%), Gaps = 58/369 (15%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
+ +I + +LP ++ V G R+ GG L + H + YV P+
Sbjct: 348 VTRIFAKTELLPFLLERATVTGLPADRS--GGSVAAFTHLYMPRMHRQGYVAPNV----- 400
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
G+ G AA GG V++ + G YD ++L D+ SLYPSII+ + I
Sbjct: 401 ---GDVAG----------AASPGGFVMDSRPGLYDSVLVL-DYKSLYPSIIRTFLIDPVG 446
Query: 536 IPVRMLQDSDITTLCEYLPEHQVDT-GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
+ ML D + +L T LPS + ++ + R K +P LS
Sbjct: 447 LVEGMLHPGDDECVPGFLGARFSRTRHCLPSIVGQVWQGRETAKREHNKP-LS------- 498
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 654
+ALK+ N+ YG LG RFF LA+ +T +G EI+ T+ L++ YEVIYGD
Sbjct: 499 ----QALKIIMNAFYGVLGSTGCRFFDPRLASSITMRGHEIMHRTRELIQAEGYEVIYGD 554
Query: 655 TDSLMISC-NVNDYDSVFKIGNQIKSECNKLYKQ-----------LELDIDGVYK--YML 700
TDS + + +D D +IG + N ++Q LEL + Y+ +M
Sbjct: 555 TDSTFVWLRHAHDEDDAGRIGRALVEHINAWWRQDLQRRFGLDSALELQFERHYRRFFMP 614
Query: 701 LLK------KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
++ KK+YA L++S + +++ KG++ VR DW+ LA + + + +I +
Sbjct: 615 TIRGAEEGSKKRYAGLTVSADGHEEIV----YKGLETVRTDWTPLAQQFQQELYRRIFTQ 670
Query: 755 QSYTDYSLD 763
Q Y DY D
Sbjct: 671 QPYQDYVRD 679
>gi|66809121|ref|XP_638283.1| DNA polymerase delta catalytic subunit [Dictyostelium discoideum
AX4]
gi|74853854|sp|Q54N97.1|DPOD1_DICDI RecName: Full=DNA polymerase delta catalytic subunit; AltName:
Full=DNA polymerase III
gi|60466714|gb|EAL64765.1| DNA polymerase delta catalytic subunit [Dictyostelium discoideum
AX4]
Length = 1104
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 178/355 (50%), Gaps = 48/355 (13%)
Query: 488 GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT---------IPV 538
GKG K + G +V+EP GFYD I +DF SLYPSI+ +N+C++T +P
Sbjct: 582 GKGEK---FQGAIVIEPTPGFYDTPIATLDFTSLYPSIMMAHNLCYSTLLSAEEAKKLPP 638
Query: 539 RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYD 595
+ T ++ + G+LP +++L+ +R++ K +K P + L D
Sbjct: 639 EIYTT---TPFGDHFIKSDTKKGLLPRILEELLSARKKAKDELKNEKDPFKRAVL----D 691
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------L 646
RQ ALK++ANS+YG G + ++ VT+ GRE+L TK +VE
Sbjct: 692 GRQLALKISANSVYGFTGARVGKLPCLEISRSVTSFGREMLDKTKKIVEERYTIANGYKH 751
Query: 647 NYEVIYGDTDSLMISCNVNDYDSVFKIG-NQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
+ +IYGDTDS+M+ V ++G + K + + LD + VY LL+ KK
Sbjct: 752 DAVIIYGDTDSVMVKFGVKTVAEAMEMGRDAAKFVTTTFIRPINLDFEKVYYPYLLMAKK 811
Query: 706 KYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
KYA L +K + +M ++KG+++VRRD L ++ +IL E+
Sbjct: 812 KYAGLYWTKPDIHDRM----DVKGLEMVRRDTCLLVRNVVSTILKKILIEKD-------- 859
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
L++ E+ K + +DL + L++L ITK L+K GKV + L+R R R
Sbjct: 860 -LKSAEEYTKSVISDLLQNRLDLSMLVITKALSKTQYKGKVIHNE--LARKMRAR 911
>gi|380488089|emb|CCF37614.1| DNA polymerase delta catalytic subunit [Colletotrichum
higginsianum]
Length = 1103
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 168/326 (51%), Gaps = 40/326 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSD--I 546
Y G V+EP +G+YD + +DF SLYPSI+Q +N+C+TT+ ++ +D D +
Sbjct: 576 YEGATVIEPTRGYYDVPVATLDFASLYPSIMQAHNLCYTTLVNKKAIEKFQLKKDEDYIV 635
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + ++ G+L +++L+ +R+Q K A+ P + L + RQ ALK+
Sbjct: 636 TPNGDTFVTNKQRKGLLAQILEELLSARKQAKRELAVETDPFKKAVL----NGRQLALKI 691
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + +A+ T+ GR++++ TK VE + + +VIYGD
Sbjct: 692 SANSVYGLTGATTGKLPCLEIASSTTSFGRQMIMKTKEEVEKKYCIANGYSHDAQVIYGD 751
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D K+G + + +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 752 TDSVMVKFGTKDLPEAMKLGEEAANHVSSKFVKPIKLEFEKVYYPYLLINKKRYAGLYWT 811
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
K KM + KG++ VRRD L + V+ IL +D +Q ++
Sbjct: 812 KPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVQGAQDY 858
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K DL V ++ L ITK LTK
Sbjct: 859 VKDTIADLLQNKVDMSKLVITKALTK 884
>gi|26353290|dbj|BAC40275.1| unnamed protein product [Mus musculus]
Length = 1105
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 166/326 (50%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDI-T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++A
Sbjct: 639 PTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVSA 695
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDTD
Sbjct: 696 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDTD 755
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 756 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSR 815
Query: 716 SNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
S+ KM C KG++ VRRD L + + +IL +D H
Sbjct: 816 SDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------MDRDPDGAVAHA 862
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 863 KDVISDLLCNRIDISQLVITKELTRA 888
>gi|145251457|ref|XP_001397242.1| DNA polymerase delta catalytic subunit [Aspergillus niger CBS
513.88]
gi|134082776|emb|CAK48550.1| unnamed protein product [Aspergillus niger]
gi|350636552|gb|EHA24912.1| hypothetical protein ASPNIDRAFT_210383 [Aspergillus niger ATCC
1015]
Length = 1105
Score = 133 bits (334), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 116/404 (28%), Positives = 201/404 (49%), Gaps = 62/404 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P N
Sbjct: 523 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQQLVIP------N 570
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K +E Y G V+EP +G+Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 571 TKSNDEQD------------YEGATVIEPVRGYYGVPIATLDFASLYPSIIQAHNLCYTT 618
Query: 536 IP-------VRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ +++++D D +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 619 LLNKSSVERLKLVKDEDYIVTPNGDMFCTAKVRKGLLSQILEELLSARKRAK---KELAV 675
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 676 ETDPFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVE 735
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ + +VIYGDTDS+M+ V++ + K+G + +K K ++L+ +
Sbjct: 736 ARYTIANGYSHDAKVIYGDTDSVMVKFGVDNLEEAMKLGQEASEYVSSKFLKPIKLEFEK 795
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
VY LL+ KK+YA L +N + KG++ VRRD L + V+ +IL E
Sbjct: 796 VYFPYLLINKKRYAGL---YWTNPNKYDKMDTKGIETVRRDNCLLVQNVIETVLQKILVE 852
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+ + +++K +DL + ++ L ITK L+K
Sbjct: 853 RD---------IDGAQDYVKDTISDLLQNKIDMSKLVITKALSK 887
>gi|13177606|gb|AAK14825.1| DNA polymerase alpha [Plasmodium falciparum]
Length = 1855
Score = 133 bits (334), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/251 (38%), Positives = 149/251 (59%), Gaps = 18/251 (7%)
Query: 561 GILPSEIKKLVESRRQVKALMKQPNLSS--DLLMQYDIRQKALKLTANSMYGCLGFPNSR 618
GILP +K LVE R +K L+ +LL+ I+ ++KL +NS+YGCLG N+R
Sbjct: 1150 GILPCILKSLVEKRSVIKKLISNEKNKEKKELLL---IQSLSIKLISNSIYGCLGNTNNR 1206
Query: 619 FFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISC-----NVNDYDSVFK 672
F+A+ +A+ +T+KGR +L +TK VE N +VIYGDTDS+MI N+N+Y FK
Sbjct: 1207 FYAKHIASYITSKGRNLLQHTKFKVEKEFNLKVIYGDTDSIMIDTGIKANNINNYKESFK 1266
Query: 673 IGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVV 732
+ + IK+ NK YK+LELD++ ++ +LLLKKKKYA + + N E+KG++ +
Sbjct: 1267 LAHLIKNSINKNYKKLELDLECIFSKLLLLKKKKYACAKV--IDNNLEKYEYEMKGINFI 1324
Query: 733 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN-----IHEHMKKIRTDLDNGFVPL 787
+RD+S+++ G V+ I + ++ L+N IHE+++ I + N L
Sbjct: 1325 KRDFSKISKLIGNEVLRIIFTNRDVDSKNIPVPLENDLSEQIHEYLRTINQRIQNDEFDL 1384
Query: 788 TLLEITKQLTK 798
ITK+LTK
Sbjct: 1385 DYYIITKKLTK 1395
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 70/108 (64%), Gaps = 6/108 (5%)
Query: 432 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGR 491
+T + G + R+L+ SER EF LLH +++K ++ P K+ + E N+ K +
Sbjct: 968 LTKLSGYIWMRSLLCYTSERVEFFLLHEYNKKKFITPLI------KKRTKKIETNQMKNK 1021
Query: 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR 539
A Y GGLVL+P G+YD F++ +DFNSLYPSII EYN+CF+T+ ++
Sbjct: 1022 NTAKYLGGLVLDPLCGYYDTFVLYLDFNSLYPSIIIEYNVCFSTLKLK 1069
Score = 43.1 bits (100), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 15/174 (8%)
Query: 222 DIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLL--------PRSEHLKTKEPV 273
DI K ++ LFGK K + S + ++N+DR Y L E +K
Sbjct: 341 DICKHRNSIILFGKTLTKFK-KYKSISIFIENLDRYYYFLLNKNKVYYENGEEIKFNHEK 399
Query: 274 SIAQVYSEFDQ---IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPS 330
+ SEF + I +Y + KI K+ NL D Y++V YS +
Sbjct: 400 FKIHIMSEFLEEFKIIREYHNIKMAKYKIVKRKNLNLSSYDD-ELYIKVLYSYNNDPIHE 458
Query: 331 DLS-GDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP-SRISWCKYEV 382
G ++ + +EN ++++ K P W++ K S +++C ++
Sbjct: 459 KFQKGSSYLSFYCCNEDIVENFIIKKNFKLPCWIKIKNLRKNDLSNLTYCYFDC 512
>gi|403353908|gb|EJY76499.1| DNA polymerase [Oxytricha trifallax]
Length = 1068
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 208/408 (50%), Gaps = 43/408 (10%)
Query: 481 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVR 539
E G +N+GK + G LV++P + F+ + I ++DF SLYPSI+ +NIC++T IP +
Sbjct: 519 ERGPSNEGK------FEGALVIDPNRDFFLEPIAILDFASLYPSIMLAHNICYSTLIPPK 572
Query: 540 MLQDSDI-----TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
++ + T ++ + +V GILP +++L+E+R++ K K+ LS + +
Sbjct: 573 AVKFYNPDHYLKTPTGDHFIKAEVKKGILPLILEELIEARKKAK---KEFALSDEKAV-L 628
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--------- 645
D RQ A+K+ ANS+YG G + +++ VTA GRE++ +K+ V
Sbjct: 629 DGRQMAMKVAANSVYGFTGAQIGQLPCIAISSSVTAYGREMIEMSKNFVITRFNKQNGYK 688
Query: 646 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKK 704
+ EVIYGDTDS+M+ V ++G + K + + ++L+ + VY LLL K
Sbjct: 689 YDSEVIYGDTDSVMVKFGVKSVAEAMELGQEAAEYVTKFFTEPIKLEFEKVYYPYLLLNK 748
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
K+YA L +K I + KG++ VRRD L + + ++ IL E+ ++ +LD
Sbjct: 749 KRYAGLLWTKPDKFDCI---DAKGIETVRRDSCGLVQDTVQNSLNMILIERD-SNKALD- 803
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGG-KVCI----TQIRLSRNRRGR 819
+ K I +DL + L+LL I+K L K + + CI T I+ + +
Sbjct: 804 -------YCKGIISDLLQNRIDLSLLVISKGLGKKSKSEIQDCISGPPTTIKEIKAQAKG 856
Query: 820 RRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE 867
+++ E ++ ++R +G + KK + + EK E+
Sbjct: 857 YTQKQAHTELAERMRKRDAASAPNQGDRVAYVMVKKTADSKVHEKSED 904
>gi|148690782|gb|EDL22729.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform
CRA_a [Mus musculus]
Length = 1127
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 168/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 601 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 660
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++
Sbjct: 661 PTGDEFV-KSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVS 716
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE + N +V+YGDT
Sbjct: 717 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDT 776
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 777 DSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 836
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
S+ KM C KG++ VRRD L + + +IL +D H
Sbjct: 837 RSDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAH 883
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 884 AKDVISDLLCNRIDISQLVITKELTRA 910
>gi|366990559|ref|XP_003675047.1| hypothetical protein NCAS_0B05920 [Naumovozyma castellii CBS 4309]
gi|342300911|emb|CCC68676.1| hypothetical protein NCAS_0B05920 [Naumovozyma castellii CBS 4309]
Length = 1099
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 160/300 (53%), Gaps = 33/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSD--I 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ +++ +D D I
Sbjct: 589 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLKLTKDEDYVI 648
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKALKLT 604
T +Y ++ GILP + +L+ +R++ K +K + D+L + RQ ALK++
Sbjct: 649 TPNGDYFVTSKIRRGILPIILDELINARKRAKKDLKNEKDPFKRDVL---NGRQLALKIS 705
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-----LNYE----VIYGDT 655
ANS+YG G + +++ VT+ GRE+++ TK+ V++ YE V+YGDT
Sbjct: 706 ANSVYGFTGATVGKLPCLAISSSVTSFGREMIMLTKNAVQDKYSKANGYENDAIVVYGDT 765
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ ND +G + + + L+K + L+ + Y LL+ KK+YA L
Sbjct: 766 DSVMVKFGTNDLKEAMALGTEAAAYVSTLFKNPINLEFEKAYFPYLLINKKRYAGL---Y 822
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS------YTDYSLDDRLQN 768
+N + KG+ VRRD L S V+ +IL E++ + ++DD L N
Sbjct: 823 WTNPDKYDKLDQKGLASVRRDSCSLVSIVMNKVLKKILIERNVNGALEFVKKTIDDILHN 882
>gi|438134|emb|CAA79895.1| DNA-directed DNA polymerase [Mus musculus]
Length = 1105
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 168/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++
Sbjct: 639 PTGDEFV-KSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVS 694
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE + N +V+YGDT
Sbjct: 695 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDT 754
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 755 DSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 814
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
S+ KM C KG++ VRRD L + + +IL +D H
Sbjct: 815 RSDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAH 861
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 862 AKDVISDLLCNRIDISQLVITKELTRA 888
>gi|242817379|ref|XP_002486944.1| DNA polymerase delta catalytic subunit Cdc2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218713409|gb|EED12833.1| DNA polymerase delta catalytic subunit Cdc2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1106
Score = 132 bits (333), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 171/326 (52%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---------PVRMLQDSDI 546
Y G V+EP +G+YD + +DF SLYPSIIQ +N+C+TT+ ++ +D +
Sbjct: 580 YEGATVIEPVRGYYDVPVATLDFASLYPSIIQAHNLCYTTLLNQKKVEHFNLKKDEDYIV 639
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + +V G+L +++L+ +R++ K A+ K P + L + RQ ALK+
Sbjct: 640 TPNGDMFCTTKVRKGLLSQILEELLSARKRAKRELAVEKDPFKKAVL----NGRQLALKV 695
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + +A+ T+ GR+++ TK+ VE + + +VIYGD
Sbjct: 696 SANSVYGLTGATVGKLPCLEIASSTTSYGRQMIEKTKAEVEAKYTIANGYSHDAQVIYGD 755
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ V + K+G + +K K ++L+ + VY LL+ KK+YA L
Sbjct: 756 TDSVMVKFGVRTLEEAMKLGEEAAEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLY-- 813
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+N K + KG++ VRRD +L + V+++IL +D + E++
Sbjct: 814 -WTNTKKYDKMDTKGIETVRRDNCRLVQTVIETVLNKIL---------IDRDVNGAQEYV 863
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K +DL + ++ L ITK L+K+
Sbjct: 864 KNTISDLLQNKIDMSKLVITKALSKS 889
>gi|324120722|dbj|BAJ78752.1| DNA polymerase delta catalytic subunit [Forficula hiromasai]
Length = 1120
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 116/396 (29%), Positives = 188/396 (47%), Gaps = 56/396 (14%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
++++ V G LS L G+ + LL + Y++P G+E E
Sbjct: 554 MEMSRVTGVSLSSLLTRGQQVKVVSQLLRHSRARGYLMP----AHTXSAGDEQFE----- 604
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT---------IPVRM 540
G V+EP++G+Y I +DF+SLYPSI+ +N+C+TT +P
Sbjct: 605 --------GATVIEPRRGYYPHPIATLDFSSLYPSIMMAHNLCYTTLVPPNKRNIVPADQ 656
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ-YDIRQK 599
L + L + V G+LP ++ L+ +R+Q KA +K N + Q D RQ
Sbjct: 657 LTHTPANNL---FVKASVRKGLLPEILEDLLAARKQAKADLK--NETDPFKKQVLDGRQL 711
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEV 650
ALK++ANS+YG G R +++ VTA GR+++ +TK VEN + V
Sbjct: 712 ALKISANSVYGFTGAQVGRLPCLEISSSVTAYGRQMIESTKQEVENKYNVSNGYDHDSMV 771
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAA 709
IYGDTDS+M++ V D ++G + + K ++L+ + VY LL+ KK+YA
Sbjct: 772 IYGDTDSVMVNFGVKDIAEAMRLGKEAADYVSAKFINPIKLEFEKVYYPYLLINKKRYAG 831
Query: 710 LSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 768
L ++ + KM C KG++ VRRD L + + ++L +D
Sbjct: 832 LYFTRPDKHDKMDC----KGIETVRRDSCPLVASVMNTSLEKLL---------IDRDPDG 878
Query: 769 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
E++K I L + ++ L +TK+L K GK
Sbjct: 879 AVEYVKYIIAQLLCNKIDISKLVVTKELAKVDYAGK 914
>gi|240147775|gb|ACS45124.1| POL1-like protein [Glomus etunicatum]
gi|240147779|gb|ACS45126.1| POL1-like protein [Glomus etunicatum]
Length = 117
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ +YDI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 2 RKNVKKLMVDPRESASY-ARYDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 60
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 61 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKILKELVNKQYKSLEI 117
>gi|119175148|ref|XP_001239851.1| hypothetical protein CIMG_09472 [Coccidioides immitis RS]
gi|392870043|gb|EAS28595.2| DNA polymerase (pol2) [Coccidioides immitis RS]
Length = 1110
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 200/410 (48%), Gaps = 61/410 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P+ +
Sbjct: 527 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQDLVIPNLK---- 576
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ GEE Y G V+EP K +YD I +DF SLYPSIIQ +N+C+TT
Sbjct: 577 NENGEEQ-------------YKGATVIEPVKDYYDVPIATLDFASLYPSIIQAHNLCYTT 623
Query: 536 I-------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ + + +D D +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 624 LLNKTSVEKLNLKKDEDYIVTPNGDMFCTSKVRKGLLSQILQELLSARKRAK---KELAV 680
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G N + +A+ T+ GR++++ TK VE
Sbjct: 681 ETDPFKKAVLNGRQLALKISANSVYGITGASNGKLPCLAIASSTTSYGRQMIMKTKDEVE 740
Query: 645 N---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDG 694
+ +VIYGDTDS+M+ V D K+G + + K + ++L+ +
Sbjct: 741 ARFTMANGYPYDAKVIYGDTDSVMVKFGVKDIAEAMKLGQEAADFVSAKFLEPIKLEFEK 800
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
VY LL+ KK+YA L +N + KG++ VRRD +L + V+ +IL
Sbjct: 801 VYFPYLLINKKRYAGLF---WTNPNKFDKMDSKGIETVRRDNCRLVQTVIETVLKKIL-- 855
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + ++K DL V ++ L ITK L+K+ K
Sbjct: 856 -------IDRDVNGAESYVKDTIADLLQNKVDMSKLVITKALSKSDYSAK 898
>gi|333910025|ref|YP_004483758.1| DNA polymerase Pol2 [Methanotorris igneus Kol 5]
gi|333750614|gb|AEF95693.1| DNA polymerase Pol2 [Methanotorris igneus Kol 5]
Length = 781
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 115/404 (28%), Positives = 194/404 (48%), Gaps = 39/404 (9%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL + + + L S+ E+LLL + + + P NK EE
Sbjct: 334 LPLEVMFSRIVNQTLFEITRMSSSQMVEYLLLKNAFKNNTIAP------NKPSNEEY--- 384
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
+ R K +Y GG V EP +G ++ I+ DF +LYPSII +NI TI +D
Sbjct: 385 ---QRRLKESYEGGYVKEPIRGMHES-IVSFDFKALYPSIIISHNISPDTIDCECCKDES 440
Query: 546 ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY---DIRQKALK 602
L + + + G++P ++ LVE R ++K MK+ ++ +Y D QK+LK
Sbjct: 441 EKILEHWFCKKK--EGLIPKTLRNLVERRMEIKKKMKEKAKKGEIDEEYKLFDYEQKSLK 498
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC 662
+ ANS YG L FP +R++++ A +VT GR+ + T E + VIY DTD
Sbjct: 499 ILANSHYGYLAFPRARWYSKECAEVVTYLGRKYIQQTIKEAEKFGFRVIYSDTDGFYAIW 558
Query: 663 --NVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++ + + K+ + ++L +EL+ +G YK + + KK+YA + N K+
Sbjct: 559 KEKISKDELIKKVHEFLDMINSRLPGNMELEFEGFYKRGIFVTKKRYALID----ENNKI 614
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
IKG++ VRRDW+ +A + K V+ +L ++ ++ + ++ + DL
Sbjct: 615 ----TIKGLEFVRRDWANIAKKTQKAVLETLL---------IEGDVEKATKIIQDVVDDL 661
Query: 781 DNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRN--RRGRRRR 822
G V L I QLTK P+ K + +++ ++G R R
Sbjct: 662 KKGKVNKEDLIIYTQLTKDPKEYKTTAPHVEVAKRILKKGGRLR 705
>gi|295699928|ref|YP_003607821.1| DNA-directed DNA polymerase [Burkholderia sp. CCGE1002]
gi|295439141|gb|ADG18310.1| DNA-directed DNA polymerase [Burkholderia sp. CCGE1002]
Length = 794
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 110/394 (27%), Positives = 180/394 (45%), Gaps = 65/394 (16%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
+ +I + +LP ++ V G R+ GG L + H + YV P+
Sbjct: 348 VTRIFAKTELLPFLLERATVTGLPADRS--GGSVAAFTHLYMPRMHRQGYVAPNL----- 400
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
G+ G AA GG V++ + G YD ++++D+ SLYPSII+ + I
Sbjct: 401 ---GDVAG----------AASPGGFVMDSRPGLYDS-VLVLDYKSLYPSIIRTFLIDPLG 446
Query: 536 IPVRMLQDSDITTLCEYLPEHQVDT-GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
+ ML D ++ +L T LPS + ++ ++R K +P LS
Sbjct: 447 LVEGMLHPDDAHSVPGFLGARFSRTRHCLPSIVAQVWQAREAAKREHNKP-LS------- 498
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 654
+ALK+ N+ YG LG RFF LA+ +T +G EI+ T+ L+E YEVIYGD
Sbjct: 499 ----QALKIIMNAFYGVLGSTGCRFFDPRLASSITMRGHEIMHTTRELIEAQGYEVIYGD 554
Query: 655 TDSLMISC-NVNDYDSVFKIGNQIKSECNKLYKQ-----------LELDIDGVYKYMLLL 702
TDS + + +D + +IG + N ++Q LEL + Y+ +
Sbjct: 555 TDSTFVWLRHAHDEEDAARIGRALVEHINAAWRQRLQARFGIDSALELQFERHYRRFFMP 614
Query: 703 --------KKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
KK+YA L++ L +G+ KG++ VR DW+ LA + + + +I +
Sbjct: 615 TVRGAEEGSKKRYAGLTV--LPDGREDVV--YKGLETVRTDWTPLAQQFQQELYRRIFKQ 670
Query: 755 QSYTDY-------SLDDRLQNIHEHMKKIRTDLD 781
Q Y DY +L RL + + K++R +D
Sbjct: 671 QPYQDYVRDYVRDTLAGRLDDQLVYRKQLRRPID 704
>gi|326473539|gb|EGD97548.1| DNA polymerase family B [Trichophyton tonsurans CBS 112818]
Length = 1085
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 197/411 (47%), Gaps = 62/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+PD + N
Sbjct: 527 KLMCLVNYTEMA-RVTGVPFNFLL-----ARGQQIKFISQLFRKALEQKLVIPDLKNDDN 580
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ Y G V+EP + +Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 581 SNQ----------------QYEGATVIEPVRDYYPVPIATLDFASLYPSIIQAHNLCYTT 624
Query: 536 I----PVRML-----QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQ 583
+ V L +D +T + +V G+L +++L+ +R++ K A+ K
Sbjct: 625 LLNKRTVEKLGLEKDEDYIVTPNDDMFCTAKVRKGLLSQILEELLTARKRAKRELAVEKD 684
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
P + L + RQ ALK++ANS+YG G N + +A+ T+ GR+++ TK V
Sbjct: 685 PFKKAVL----NGRQLALKISANSVYGITGATNGKLPCLAIASSTTSYGRQMIEKTKDEV 740
Query: 644 E---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDID 693
E + + +VIYGDTDS+M+ D K+G + +K K ++L+ +
Sbjct: 741 EARYTISNGYSHDAKVIYGDTDSVMVKFGTTDLAEAMKLGEEAAGFVSSKFMKPIKLEFE 800
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +N + KG++ VRRD L + V+++IL
Sbjct: 801 KVYYPYLLINKKRYAGL---YWTNPVKYDKMDTKGIETVRRDNCLLVQTVIETVLNKIL- 856
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + ++K I +DL V ++ L ITK LTK GK
Sbjct: 857 --------IDRNVNGAETYVKNIISDLLQNKVDMSKLVITKALTKEEYTGK 899
>gi|328865112|gb|EGG13498.1| DNA polymerase delta catalytic subunit [Dictyostelium fasciculatum]
Length = 1801
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 113/344 (32%), Positives = 183/344 (53%), Gaps = 46/344 (13%)
Query: 494 AAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM----LQDSDITTL 549
++ G V++P+ GFYD+ I +DF SLYPSI+ +N+C+TT+ + +D T
Sbjct: 1282 VSFQGAYVIDPQVGFYDEPIATLDFTSLYPSIMMAHNLCYTTLLTAADKEKVDPNDYTLT 1341
Query: 550 ---CEYL-PEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKALK 602
++ P H+ GILP +++L+ +R++ K +K P + L D RQ ALK
Sbjct: 1342 PSGSAFIKPSHR--KGILPKILEELLGARKKAKDDLKNEKDPFKRAVL----DGRQLALK 1395
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NYE----VIYG 653
++ANS+YG G + ++ VTA GR +L TK+ VEN YE +IYG
Sbjct: 1396 ISANSVYGFTGARVGKLPCLDISRSVTAFGRVMLDTTKNYVENTYTIANGYENDAKIIYG 1455
Query: 654 DTDSLMISCNVNDYDSVFKIG----NQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAA 709
DTDS+M+ V ++G +I ++C + + LD + VY LL+ KK+YA
Sbjct: 1456 DTDSVMVKFGVKTVAEAIELGRKASKEITAKC--FIRPINLDFEKVYYPYLLINKKRYAG 1513
Query: 710 LSISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 768
L +K ++ KM ++KG++VVRRD L + VIS +L++ +D +++
Sbjct: 1514 LFWTKTDTHDKM----DVKGLEVVRRDNCPLV----RMVISTVLNK-----ILIDKDIKS 1560
Query: 769 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRL 812
E K I +DL + +++L ITK L+K GKV ++ L
Sbjct: 1561 AEEFTKDIVSDLLQNKIDISMLVITKALSKNDYKGKVIHNEVAL 1604
>gi|326480238|gb|EGE04248.1| DNA polymerase delta catalytic subunit [Trichophyton equinum CBS
127.97]
Length = 1111
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 197/411 (47%), Gaps = 62/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+PD + N
Sbjct: 527 KLMCLVNYTEMA-RVTGVPFNFLL-----ARGQQIKFISQLFRKALEQKLVIPDLKNDDN 580
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ Y G V+EP + +Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 581 SNQ----------------QYEGATVIEPVRDYYPVPIATLDFASLYPSIIQAHNLCYTT 624
Query: 536 I----PVRML-----QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQ 583
+ V L +D +T + +V G+L +++L+ +R++ K A+ K
Sbjct: 625 LLNKRTVEKLGLKKDEDYIVTPNDDMFCTAKVRKGLLSQILEELLTARKRAKRELAVEKD 684
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
P + L + RQ ALK++ANS+YG G N + +A+ T+ GR+++ TK V
Sbjct: 685 PFKKAVL----NGRQLALKISANSVYGITGATNGKLPCLAIASSTTSYGRQMIEKTKDEV 740
Query: 644 E---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDID 693
E + + +VIYGDTDS+M+ D K+G + +K K ++L+ +
Sbjct: 741 EARYTISNGYSHDAKVIYGDTDSVMVKFGTTDLAEAMKLGEEAAGFVSSKFMKPIKLEFE 800
Query: 694 GVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +N + KG++ VRRD L + V+++IL
Sbjct: 801 KVYYPYLLINKKRYAGL---YWTNPVKYDKMDTKGIETVRRDNCLLVQTVIETVLNKIL- 856
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + ++K I +DL V ++ L ITK LTK GK
Sbjct: 857 --------IDRNVNGAETYVKNIISDLLQNKVDMSKLVITKALTKEEYTGK 899
>gi|14318657|gb|AAH09128.1| Polymerase (DNA directed), delta 1, catalytic subunit [Mus
musculus]
gi|30962877|gb|AAH52670.1| Polymerase (DNA directed), delta 1, catalytic subunit [Mus
musculus]
Length = 1105
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 166/326 (50%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDI-T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++A
Sbjct: 639 PTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVSA 695
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDTD
Sbjct: 696 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDTD 755
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 756 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSR 815
Query: 716 SNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
S+ KM C KG++ VRRD L + + +IL +D H
Sbjct: 816 SDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAHA 862
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 863 KDVISDLLCNRIDISQLVITKELTRA 888
>gi|240147860|gb|ACS45165.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 132 bits (333), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/117 (58%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ Q DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMADPRESASY-AQVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKLLKELVNKQYKSLEI 118
>gi|374325878|ref|YP_005084078.1| DNA polymerase II [Pyrobaculum sp. 1860]
gi|356641147|gb|AET31826.1| DNA polymerase II [Pyrobaculum sp. 1860]
Length = 785
Score = 132 bits (333), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 183/375 (48%), Gaps = 50/375 (13%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP IQ+++V G L + R E++LL ++ V P N++E
Sbjct: 350 LLPFLIQLSSVSGLPLDQVAAASVGNRVEWMLLRYAYKMGEVAP------NREE------ 397
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQ 542
R+ Y G +VLEPK G Y+ ++L DF+S+YP+++ YN+ T P
Sbjct: 398 ------REYEPYKGAIVLEPKPGLYNDVLVL-DFSSMYPNVMMRYNLSPDTYLEPGEPEP 450
Query: 543 DSDITTLCEYLPEHQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599
S + E H+ G +P +++LVE RR + MK+ + S D RQK
Sbjct: 451 PSGVYIAPEV--GHRFRREPPGFVPQVLRQLVELRRLAREEMKRYSPDSPEYRVLDERQK 508
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
ALK+ AN+MYG +G+ +R++ + +A VTA R IL + + L V+YGDTDSL
Sbjct: 509 ALKVMANAMYGYMGWVGARWYKREVAESVTAFARSILRDVIDYAKRLGVVVVYGDTDSLF 568
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI--DGVYKYMLLLK-KKKYAALSISKLS 716
+ K G ++ + ++ +DI D Y +L + KK+YA L L
Sbjct: 569 V-----------KRGGDVEKLVKYVEEKYGIDIKVDKDYSTVLFTEAKKRYAGL----LR 613
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY--SLDDRLQNIHEHMK 774
+G++ +I G +VVR DWS+LA E VI IL + + + ++ + + +K
Sbjct: 614 DGRI----DIVGFEVVRGDWSELAKEVQLRVIELILKSRDAAEARRRVTQYVREVVDALK 669
Query: 775 KIRTDLDNGFVPLTL 789
R DLD+ + TL
Sbjct: 670 NYRFDLDDLVIWKTL 684
>gi|347826748|emb|CCD42445.1| similar to Similar to dna polymerase delta catalytic subunit (ec
2.7.7.7) [Botryotinia fuckeliana]
Length = 616
Score = 132 bits (333), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 168/326 (51%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRMLQDSD--I 546
Y G V+EP +G+Y I +DF SLYPSIIQ +N+C+TT+ +++ +D D +
Sbjct: 90 YEGATVIEPTRGYYSVPIATLDFASLYPSIIQAHNLCYTTLLKKDVVEALKLEKDEDYIV 149
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + + G+L +++L+ +R+Q K A+ P + L + RQ ALK+
Sbjct: 150 TPNGDMFVTTKQRKGLLTQILEELLTARKQAKRELAVETDPFKKAVL----NGRQLALKI 205
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + P+A+ T+ GR+++ TK+ VE + + +VIYGD
Sbjct: 206 SANSVYGLTGATVGKVPCLPIASSTTSYGRQMIEKTKAEVEAKYTIANGYSHDAQVIYGD 265
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ V + K+G + +K K ++L+ + VY LL+ KK+YA L
Sbjct: 266 TDSVMVKFGVKELAEAMKLGEEAAQYVSSKFIKPIKLEFEKVYYPYLLINKKRYAGLY-- 323
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+N + KG++ VRRD +L + V+ IL +D +Q +++
Sbjct: 324 -WTNPDKYDKMDTKGIETVRRDNCRLVQNVIETVLRMIL---------IDQDVQGAQDYV 373
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K +DL + ++ L ITK L KA
Sbjct: 374 KDTISDLLQNKIDMSKLVITKALAKA 399
>gi|254587977|ref|NP_035261.3| DNA polymerase delta catalytic subunit [Mus musculus]
gi|341940458|sp|P52431.2|DPOD1_MOUSE RecName: Full=DNA polymerase delta catalytic subunit
gi|74139374|dbj|BAE40829.1| unnamed protein product [Mus musculus]
gi|74195649|dbj|BAE39632.1| unnamed protein product [Mus musculus]
gi|74223279|dbj|BAE40772.1| unnamed protein product [Mus musculus]
Length = 1105
Score = 132 bits (333), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 168/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++
Sbjct: 639 PTGDEFV-KSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVS 694
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE + N +V+YGDT
Sbjct: 695 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDT 754
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 755 DSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 814
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
S+ KM C KG++ VRRD L + + +IL +D H
Sbjct: 815 RSDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAH 861
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 862 AKDVISDLLCNRIDISQLVITKELTRA 888
>gi|212530840|ref|XP_002145577.1| DNA polymerase delta catalytic subunit Cdc2, putative [Talaromyces
marneffei ATCC 18224]
gi|210074975|gb|EEA29062.1| DNA polymerase delta catalytic subunit Cdc2, putative [Talaromyces
marneffei ATCC 18224]
Length = 1105
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 172/326 (52%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRMLQDSD--I 546
Y G V+EP +G+YD + +DF SLYPSIIQ +N+C+TT+ + +D D +
Sbjct: 579 YEGATVIEPIRGYYDVPVATLDFASLYPSIIQAHNLCYTTLLNKHKVEHFNLKKDEDYIV 638
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + +V G+L +++L+ +R++ K A+ K P + L + RQ ALK+
Sbjct: 639 TPNGDMFCTTKVRKGLLSQILEELLGARKRAKKELAVEKDPFKKAVL----NGRQLALKV 694
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + +A+ T+ GR+++ TK+ VE + + +VIYGD
Sbjct: 695 SANSVYGLTGATVGKLPCLEIASSTTSYGRQMIEKTKAEVEAKYTIANGYSHDAQVIYGD 754
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ V + K+G + +K K ++L+ + VY LL+ KK+YA L
Sbjct: 755 TDSVMVKFGVRTLEEAMKLGEEAADYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLY-- 812
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+N K + KG++ VRRD +L + V+++IL +D + +++
Sbjct: 813 -WTNTKKYDKMDTKGIETVRRDNCRLVQTVIETVLNKIL---------IDRDINGAQDYV 862
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL V L+ L ITK L+K+
Sbjct: 863 KNMISDLLQNKVDLSKLVITKALSKS 888
>gi|189234183|ref|XP_967290.2| PREDICTED: similar to DNA polymerase delta catalytic subunit
[Tribolium castaneum]
Length = 1172
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 123/443 (27%), Positives = 208/443 (46%), Gaps = 58/443 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G ++ L G + LL Y +P Q + ++
Sbjct: 476 VEMARVTGVPITSLLTKGEQVKVVAQLLKHARAAGYFMPTHQGAPSSEQ----------- 524
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PV----RMLQD 543
Y G V+EP++G+Y I +DF+SLYPSI+ +N+C+TT+ P L D
Sbjct: 525 ------YEGATVIEPRRGYYTDPIATLDFSSLYPSIMIAHNLCYTTLIKPSIKEKLCLSD 578
Query: 544 SDITTL---CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQ 598
+TT C ++ + V G+LP ++ L+ +R++ KA +K+ ++D +++ D RQ
Sbjct: 579 EQVTTTPANCMFV-KSSVRPGLLPHILQHLLAARKKTKAELKE---ATDPVVRAVLDGRQ 634
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NYE---- 649
A K++ANS+YG G + +++ VTA GR ++ TK VE YE
Sbjct: 635 LAYKISANSVYGFTGAQVGKLPCLEISSSVTAYGRTMIEQTKQEVEQHYRIENGYESDAM 694
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYA 708
VIYGDTDS+M++ V + ++G + + K K ++L+ + VY LL+ KK+YA
Sbjct: 695 VIYGDTDSVMVNFRVKSLERSMELGREAADLISAKFIKPIKLEFEKVYWPYLLINKKRYA 754
Query: 709 ALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
L +K KM C KG++ VRRD L + + ++L +D
Sbjct: 755 GLYFTKPDKYDKMDC----KGIETVRRDNCTLVVDVINSCLRKLL---------IDKDPD 801
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRRRRRKKK 827
+ KK+ +DL V ++ L ITK+LTK K + LS+ R K
Sbjct: 802 GAVNYAKKVISDLLQNNVDISQLVITKELTKNDYAAKQ--AHVELSKKMTKRDPGNAPKL 859
Query: 828 EEKKKWKRRGGGRRRRRGKKEEE 850
++ + G + + +K E+
Sbjct: 860 GDRIPYVIIAGTKNSKAFEKAED 882
>gi|951001|emb|CAA61282.1| DNA-directed DNA polymerase III [Candida albicans]
Length = 1038
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 99/300 (33%), Positives = 161/300 (53%), Gaps = 34/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IPVRMLQDSDITTL 549
Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT I L + D T
Sbjct: 516 YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKT 575
Query: 550 C--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 605
+Y + GILP+ + +L+ +R++ KA +K+ D+L + RQ ALK++A
Sbjct: 576 PNGDYFVHSNLRKGILPTILDELLTARKKAKADLKKETDPFKKDVL---NGRQLALKISA 632
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + +++ VTA GRE++ TK+ V+ + +VIYGDTD
Sbjct: 633 NSVYGFTGATVGKLPCLAISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTD 692
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D ++ K+G + + + +K ++L+ + VY LL+ KK+YA L ++
Sbjct: 693 SVMVKFGYQDLETCMKLGEEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAGLYWTRP 752
Query: 716 SN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE------QSYTDYSLDDRLQN 768
KM + KG++ VRRD QL V+ IL+E Q + ++ D LQN
Sbjct: 753 EKFDKM----DTKGIETVRRDNCQLVQNVITKVLEFILEERDVPKAQRFVKQTIADLLQN 808
>gi|148690786|gb|EDL22733.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform
CRA_e [Mus musculus]
Length = 1105
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 168/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++
Sbjct: 639 PTGDEFV-KSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVS 694
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE + N +V+YGDT
Sbjct: 695 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDT 754
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 755 DSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 814
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
S+ KM C KG++ VRRD L + + +IL +D H
Sbjct: 815 RSDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAH 861
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 862 AKDVISDLLCNRIDISQLVITKELTRA 888
>gi|148690785|gb|EDL22732.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform
CRA_d [Mus musculus]
Length = 1101
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 166/326 (50%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDI-T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++A
Sbjct: 639 PTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVSA 695
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDTD
Sbjct: 696 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDTD 755
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 756 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSR 815
Query: 716 SNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
S+ KM C KG++ VRRD L + + +IL +D H
Sbjct: 816 SDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAHA 862
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 863 KDVISDLLCNRIDISQLVITKELTRA 888
>gi|324120766|dbj|BAJ78774.1| DNA polymerase delta catalytic subunit [Panorpa takenouchii]
Length = 1093
Score = 132 bits (332), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 192/403 (47%), Gaps = 58/403 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL E Y++P
Sbjct: 513 KLMCIVNYMEMA----RVTGVPLSCLLTRGQQIKVVSQLLRKSKEAGYLMP--------- 559
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ G+G + Y G V+EPK+G+Y I +DF SLYPSI+ +NIC+TT+
Sbjct: 560 -------VHTGQGSDEQ-YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNICYTTLL 611
Query: 538 VRM------LQDSDITTLCE--YLPEHQVDTGILPSEIKKLVESRRQVKALM---KQPNL 586
L D IT + + V G+LP ++ L+ +R++ K + K P
Sbjct: 612 APSNRDKLGLTDDQITKTPSNNFFVKGSVRRGLLPEILESLLTARKRAKNELKVEKDPFK 671
Query: 587 SSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL 646
S L D RQ ALK++ANS+YG G + ++ VTA GR ++ +TK VE
Sbjct: 672 RSVL----DGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRSMIEHTKQEVEQR 727
Query: 647 -----NYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVY 696
YE VIYGDTDS+M++ V + ++G + + K K ++L+ + VY
Sbjct: 728 YTKQNGYESDAVVIYGDTDSVMVNFGVKSLERSMELGREAAEYVSAKFVKPIKLEFEKVY 787
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +N + + KG++ VRRD L + + ++L
Sbjct: 788 FPYLLINKKRYAGLY---FTNAEKYDKIDCKGIETVRRDNCPLVANMMNTCLQKLL---- 840
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+D E+ K+I +DL + ++ L ITK+L+K
Sbjct: 841 -----IDRDPNGAVEYAKQIISDLLCNRIDISQLVITKELSKT 878
>gi|310792587|gb|EFQ28114.1| DNA polymerase family B [Glomerella graminicola M1.001]
Length = 1103
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 52/332 (15%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSDITT 548
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT+ ++ +D D
Sbjct: 576 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLVNKKAIEKFQLKKDDD--- 632
Query: 549 LCEYLPEHQVDT--------GILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIR 597
Y+ DT G+L +++L+ +R+Q K A+ P + L + R
Sbjct: 633 ---YIVTPNGDTFVTTKQRKGLLAQILEELLTARKQAKRELAMETDPFKKAVL----NGR 685
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNY 648
Q ALK++ANS+YG G + +A+ T+ GR++++ TK VE + +
Sbjct: 686 QLALKISANSVYGLTGATTGKLPCLEIASSTTSFGRQMIMKTKEEVEKKYCIANGYSHDA 745
Query: 649 EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKY 707
+VIYGDTDS+M+ D K G + + +K K ++L+ + VY LL+ KK+Y
Sbjct: 746 QVIYGDTDSVMVKFGTKDLPEAMKFGEEAAAYVSSKFVKPIKLEFEKVYYPYLLINKKRY 805
Query: 708 AALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 766
A L +K KM + KG++ VRRD L + V+ IL +D +
Sbjct: 806 AGLYWTKPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDV 852
Query: 767 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
Q +++K DL V ++ L ITK LTK
Sbjct: 853 QGAQDYVKDTIADLLQNKVDMSKLVITKALTK 884
>gi|301087457|gb|ADK60920.1| DNA polymerase [Thermococcus celer]
Length = 774
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/421 (28%), Positives = 194/421 (46%), Gaps = 57/421 (13%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q++ + G L E+ LL +E++ + P N
Sbjct: 317 KVTFELGREFFPMEAQLSRLIGQGLWDVSRSSTGNLVEWFLLRKAYERNELAP------N 370
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K G E +G Y+GG V EP++G ++ I+ +DF SLYPSII +N+ T
Sbjct: 371 KPSGREVEIRRRG-------YAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 590
+ ++ D+ C+ P G +PS + L+E R+++K MK S D
Sbjct: 423 LNREGCENYDVAPQVGHKFCKDFP------GFIPSLLGGLLEERQKIKRRMKA---SVDP 473
Query: 591 LMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT-KSLVENLN 647
+ + D RQ+A+K+ ANS YG G+ +R++ + A VTA GRE + + L E
Sbjct: 474 VERKLLDYRQRAIKILANSFYGYYGYARARWYCRECAESVTAWGREYIDRVIRELEEKFG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++V+Y DTD L + D +V + N KL LEL+ +G Y + KKK
Sbjct: 534 FKVLYADTDGLHATIPGADAGTVKERARGFLRYINPKLPGLLELEYEGFYLRGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 766
YA + GK+ +G+++VRRDWS++A E V+ IL R
Sbjct: 594 YAVID----EEGKITT----RGLEIVRRDWSEVAKETQARVLEAIL------------RH 633
Query: 767 QNIHEHMKKIR---TDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRRRR 823
++ E ++ +R L VP L I +Q+T+ K + +++ GR R
Sbjct: 634 GDVEEAVRIVREVTEKLSKYEVPPEKLVIHEQITRDLRDYKATGPHVAVAKRLAGRGVRI 693
Query: 824 R 824
R
Sbjct: 694 R 694
>gi|435850447|ref|YP_007312033.1| DNA polymerase elongation subunit (family B) [Methanomethylovorans
hollandica DSM 15978]
gi|433661077|gb|AGB48503.1| DNA polymerase elongation subunit (family B) [Methanomethylovorans
hollandica DSM 15978]
Length = 903
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 113/396 (28%), Positives = 189/396 (47%), Gaps = 70/396 (17%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++FI + S ++++ +L +L I I+ V G++L + GG++ E LLL
Sbjct: 356 LLKFIDYARRDSELAMELVMKLQLLDRYIAISRVSGSLLQEVIDGGQTSMVENLLLRECR 415
Query: 462 EKSYVLPDKQ-----YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILM 516
+ V+P K Y +NK +G K GG VLEPKKG + +IL
Sbjct: 416 IRDRVIPPKPDDNLVYSRNKN----------SEGLK-----GGEVLEPKKGLLENVVIL- 459
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQ--------VDTGILPSEIK 568
D+ SLYP+I+ +N+C++T+ + DI E + V GI+P+ ++
Sbjct: 460 DYKSLYPTIMMAHNLCYSTV-----VEKDIPGEGETITPPSGGRFVTADVSKGIMPAILE 514
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
L+ R + K MK + + D D Q A+K+ NS YG G+ +R ++ LA V
Sbjct: 515 NLLNRRIETKKRMKDIS-NEDEYKALDATQLAMKILLNSFYGYAGYTRARLYSLTLANAV 573
Query: 629 TAKGREILLNTKSLVE--------------------------NLNYEVIYGDTDSLMISC 662
T+ GRE +L T+SL+E +++ V+YGDTDS+ + C
Sbjct: 574 TSFGRENILTTRSLIEDTIHTIYLKDGNSYLQSEIASDPLNKDISLSVVYGDTDSVFVQC 633
Query: 663 ------NVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS 716
++ D + V K + I S L +EL+ + + K L + KK+YA +
Sbjct: 634 TGKTEISLEDAELVGKKISGIVSA--SLPDPMELEFESIAKRALFIAKKRYAIWVFERFG 691
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
+G ++KG++ VRRDW +L S+ V+ +L
Sbjct: 692 DGWK-DGIKVKGMETVRRDWCELTSKTLNRVLELVL 726
>gi|302421082|ref|XP_003008371.1| DNA polymerase delta catalytic subunit [Verticillium albo-atrum
VaMs.102]
gi|261351517|gb|EEY13945.1| DNA polymerase delta catalytic subunit [Verticillium albo-atrum
VaMs.102]
Length = 1055
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 164/326 (50%), Gaps = 40/326 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP---------VRMLQDSDI 546
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TTI ++ +D +
Sbjct: 528 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTIVDKKAIEKLGLKKDEDYIV 587
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + G+L +++L+ +R+Q K A+ P + L + RQ ALK+
Sbjct: 588 TPAGNTFVTAKQRKGLLAQILEELLAARKQAKRELAVATDPFKKAVL----NGRQLALKV 643
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + +A+ T+ GR+++ TK VE + + +VIYGD
Sbjct: 644 SANSVYGLTGATTGKLPCLEIASSTTSFGRQMIEKTKEEVEAKYTIANGYSHDAQVIYGD 703
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D K+G + +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 704 TDSVMVKFGTKDLAEAMKLGEEAAGFVSSKFVKPIKLEFEKVYFPYLLINKKRYAGLYWT 763
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
K KM + KG++ VRRD L + V+ IL +D +Q E+
Sbjct: 764 KPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVQGAQEY 810
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K + DL V ++ L ITK LTK
Sbjct: 811 VKDMIADLLQNKVDMSKLVITKALTK 836
>gi|71002632|ref|XP_755997.1| DNA polymerase delta catalytic subunit Cdc2 [Aspergillus fumigatus
Af293]
gi|66853635|gb|EAL93959.1| DNA polymerase delta catalytic subunit Cdc2, putative [Aspergillus
fumigatus Af293]
gi|159130051|gb|EDP55165.1| DNA polymerase delta large chain [Aspergillus fumigatus A1163]
Length = 1105
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 119/405 (29%), Positives = 202/405 (49%), Gaps = 62/405 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +FL L E+ V+P N
Sbjct: 523 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFLSQLFRKALEQQLVIP------N 570
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K +E Y G V+EP +G+Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 571 IKSTDEQD------------YEGATVIEPIRGYYGVPIATLDFASLYPSIIQAHNLCYTT 618
Query: 536 I-------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ +++ +D D +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 619 LLNKNIVEKLKLKKDEDYIVTPNGDMFCTTKVRKGLLSQILEELLAARKRAK---KELAV 675
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 676 ETDPFKKAVLNGRQLALKVSANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVE 735
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ + +VIYGDTDS+M+ V + + K+G + +K K ++L+ +
Sbjct: 736 ARYTIANGYSHDAKVIYGDTDSVMVKFGVTELEEAMKLGQEAADYVSSKFPKPIKLEFEK 795
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
VY LL+ KK+YA L +N K + KG++ VRRD L + V+ +IL E
Sbjct: 796 VYFPYLLINKKRYAGLY---WTNPKKFDKMDTKGIETVRRDNCLLVQNVIETVLHKILIE 852
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +++K+ +DL + ++ L ITK L+KA
Sbjct: 853 RD---------IDGAQDYVKETISDLLQNKIDMSKLVITKALSKA 888
>gi|4519584|dbj|BAA75663.1| DNA polymerase II [Aeropyrum pernix]
Length = 772
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 108/381 (28%), Positives = 192/381 (50%), Gaps = 52/381 (13%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP Q++ V G L + + R E+ L+ + ++P++
Sbjct: 337 LPFGAQLSQVSGLPLDQVMAASVGFRLEWRLIREAAKLGELVPNR--------------V 382
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQD 543
+ +GR Y+G +VL PK G ++ I ++DF S+YP+I+ +YN+ T+ P +
Sbjct: 383 ERSEGR----YAGAIVLRPKPGVHED-IAVLDFASMYPNIMVKYNVGPDTLVRPGEEYGE 437
Query: 544 SDITTLCEYLPEHQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
++ T E H+ G +++ + RRQ+++ MK+ S D RQKA
Sbjct: 438 EEVYTAPEV--GHKFRKSPPGFFKKILERFLSWRRQIRSEMKKHPPDSPEYKLLDERQKA 495
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
+KL AN+ YG +G+P++R++ + A VTA GR I+ L EVIYGDTDSL +
Sbjct: 496 IKLLANASYGYMGWPHARWYCRECAEAVTAWGRSIIRTAIRKAGELGLEVIYGDTDSLFV 555
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNGK 719
ND + V ++ ++ E ++ +D VY+ + + KK+Y L++ +GK
Sbjct: 556 K---NDPEKVERLIRFVEEELG-----FDIKVDKVYRRVFFTEAKKRYVGLTV----DGK 603
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
+ ++ G + VR DWS+LA E +F +++I+ + D ++ D ++NI E +++ + D
Sbjct: 604 I----DVVGFEAVRGDWSELAKET-QFKVAEIVLKTGSVDEAV-DYVRNIIEKLRRGQVD 657
Query: 780 LDNGFVPLTLLEITKQLTKAP 800
+ L I K LT+ P
Sbjct: 658 MRK-------LVIWKTLTRPP 671
>gi|148690787|gb|EDL22734.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform
CRA_f [Mus musculus]
Length = 964
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 168/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++
Sbjct: 639 PTGDEFV-KSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVS 694
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE + N +V+YGDT
Sbjct: 695 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDT 754
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 755 DSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 814
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
S+ KM C KG++ VRRD L + + +IL +D H
Sbjct: 815 RSDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAH 861
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 862 AKDVISDLLCNRIDISQLVITKELTRA 888
>gi|324120720|dbj|BAJ78751.1| DNA polymerase delta catalytic subunit [Euborellia plebeja]
Length = 1078
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 174/328 (53%), Gaps = 35/328 (10%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPV---RMLQDSDITTLC- 550
+ G V+EP++G+Y K I +DF+SLYPSI+ +N+C+TT +PV ++Q IT
Sbjct: 561 FEGATVIEPRRGYYAKPIATLDFSSLYPSIMMAHNLCYTTLVPVAKRNIVQPDQITQTPA 620
Query: 551 -EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKALKLTANS 607
+ + V G+LP ++ L+ +R+Q KA +K+ +D + D RQ ALK++ANS
Sbjct: 621 NNFFVKSTVRKGLLPEILESLLAARKQAKADLKK---ETDPFRKQVLDGRQLALKISANS 677
Query: 608 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---NL------NYEVIYGDTDSL 658
+YG G R +++ VTA GR+++ TK VE N+ + VIYGDTDS+
Sbjct: 678 VYGFTGAQVGRLPCLEISSSVTAYGRQMIERTKQEVEAKYNIANGYPHDSMVIYGDTDSV 737
Query: 659 MISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS- 716
M+ V D ++G + +K K ++L+ + VY LL+ KK+YA L ++
Sbjct: 738 MVQFGVEDIREAMRLGKEAADFVSDKFIKPIKLEFEKVYYPYLLINKKRYAGLYFTRPEK 797
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 776
+ KM C KG++ VRRD L + + ++L +D +K++
Sbjct: 798 HDKMDC----KGIETVRRDNCPLVASIMNKSLEKLL---------VDRDPDGAVAFVKQM 844
Query: 777 RTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+DL + ++ L +TK+L +A GK
Sbjct: 845 ISDLLCNRIDISQLVVTKELARADYAGK 872
>gi|297527543|ref|YP_003669567.1| DNA polymerase Pol2 [Staphylothermus hellenicus DSM 12710]
gi|297256459|gb|ADI32668.1| DNA polymerase Pol2 [Staphylothermus hellenicus DSM 12710]
Length = 801
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 189/379 (49%), Gaps = 53/379 (13%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP A+Q++N+ G L + R E+ L+ + ++P++
Sbjct: 364 LPFAMQLSNITGLPLDQIGAASVGFRLEWYLIREAFKYGELVPNRA-------------- 409
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
GR +Y G +VL+P KG ++ I ++DF+S+YP+I+ +YN+ TI D
Sbjct: 410 ----GRAAESYRGAVVLKPVKGVHEN-IAVLDFSSMYPNIMIKYNVGPDTIIRNEKCDPR 464
Query: 546 ITTLCEYLPE-----HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
+ PE + G ++ L+ R+Q+K+ MK+ +S D RQKA
Sbjct: 465 KHNIA---PEVGHCFRKEPPGFFKKVLETLLSLRKQIKSEMKKYPPTSYEYRLLDERQKA 521
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
+K+ AN+ YG +G+ ++R++ + A VTA GR+ + + L L +VIYGDTDSL +
Sbjct: 522 VKVLANATYGYMGWVHARWYCRECAEAVTAWGRQTIKSAIELARKLGLKVIYGDTDSLFV 581
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNGK 719
+ D D V K+ + I+++ E+ ID +YK + + KK+YA L L +G+
Sbjct: 582 TY---DKDRVEKLIDLIQTKLG-----FEIKIDKIYKRVFFTEAKKRYAGL----LEDGR 629
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
+ +I G + VR DW+ +A E + V +L E S + E+++K+ D
Sbjct: 630 I----DIVGFEAVRGDWADIAKEVQEKVTEILLKENS---------VDKAIEYVRKVIAD 676
Query: 780 LDNGFVPLTLLEITKQLTK 798
L G +PL L I K L+K
Sbjct: 677 LKAGKIPLDKLIIWKTLSK 695
>gi|89886293|ref|NP_001034899.1| DNA polymerase delta catalytic subunit [Danio rerio]
gi|58615463|gb|AAW80296.1| DNA polymerase delta1 catalytic subunit [Danio rerio]
Length = 1105
Score = 132 bits (332), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 193/410 (47%), Gaps = 68/410 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L+ L G+ + LL ++ V+P K
Sbjct: 529 KLMCVINYMEMA----RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVKT 579
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y+G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT
Sbjct: 580 EGGED-------------YTGATVIEPEKGYYSVPIATLDFSSLYPSIMMAHNLCYTT-- 624
Query: 538 VRMLQDSDI------------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
+LQ S I T + + V G+LP ++ L+ +R++ KA +K+
Sbjct: 625 --LLQKSQIEKLGLGPDDFIKTPTGDLFVKSSVRKGLLPEILENLLSARKRAKAELKK-- 680
Query: 586 LSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
+D + D RQ ALK++ANS+YG G + ++ VT GR+++ TK LV
Sbjct: 681 -ETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLV 739
Query: 644 EN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDID 693
E+ + +VIYGDTDS+M+ V G + + + ++L+ +
Sbjct: 740 ESRYTLDNGYQADAKVIYGDTDSVMVKLGVATVQEAMNQGKEAAEWVSSHFVPPIKLEFE 799
Query: 694 GVYKYMLLLKKKKYAALSISKLS--NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
VY LL+ KK+YA L S + + KM C KG++ VRRD L + + I
Sbjct: 800 KVYYPYLLINKKRYAGLYFSSSAEHHDKMDC----KGIETVRRDNCPLVANLINTCLQNI 855
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +D H K++ +DL + ++ L ITK+LT+ +
Sbjct: 856 L---------IDRDPDGAVTHAKEVISDLLCNRIDISQLVITKELTRTAQ 896
>gi|324120700|dbj|BAJ78741.1| DNA polymerase delta catalytic subunit [Ephemera japonica]
Length = 1006
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 124/404 (30%), Positives = 194/404 (48%), Gaps = 63/404 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L G+ + LL EK +V+P
Sbjct: 424 KLMCIINYMEMA----RVTGVSLLCLLTRGQQIKVISQLLRKAKEKDFVIPTYSV----- 474
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
KG Y G V+EPKKG+Y + I+ +DF+SLYPSI+ +N+C+TT
Sbjct: 475 -----------KGSNDEQYEGATVIEPKKGYYKQPIVTLDFSSLYPSIMMAHNLCYTT-- 521
Query: 538 VRMLQDSD----------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLS 587
++Q+ D IT + + + G+LP ++ L+ +R++ K +K+
Sbjct: 522 --LVQNKDRLKLSSEQYTITPNGDCFVKTSIRKGLLPEILESLLSARKKAKEDLKK---E 576
Query: 588 SDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE- 644
D L Q D RQ ALK++ANS+YG G + ++ TA GR ++ +TK+ VE
Sbjct: 577 MDPLRQKVLDGRQLALKISANSVYGFTGAQVGKLPCLAISGSTTAYGRTMIEHTKTEVEQ 636
Query: 645 --NL------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGV 695
N+ + VIYGDTDS+MI V D + +G + +K K ++L+ + V
Sbjct: 637 KFNMANGYAHDSVVIYGDTDSVMIKFGVEDLPAAMALGREAAEYVTSKFIKPIKLEFEKV 696
Query: 696 YKYMLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
Y LL+ KK+YA L +K + KM C KG++ VRRD L + + +L
Sbjct: 697 YFPYLLINKKRYAGLYYTKPETYDKMDC----KGIETVRRDNCPLVANMMNTCLRMLL-- 750
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
D D +Q K + +DL + ++ L ITK+L K
Sbjct: 751 ---IDRDPDGAVQ----FAKDMISDLLCNRLDISQLVITKELAK 787
>gi|190340064|gb|AAI63875.1| Polymerase (DNA directed), delta 1, catalytic subunit [Danio rerio]
Length = 1105
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 120/410 (29%), Positives = 193/410 (47%), Gaps = 68/410 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L+ L G+ + LL ++ V+P K
Sbjct: 529 KLMCVINYMEMA----RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQDLVMP-----VVKT 579
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG E Y+G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT
Sbjct: 580 EGGED-------------YTGATVIEPEKGYYSVPIATLDFSSLYPSIMMAHNLCYTT-- 624
Query: 538 VRMLQDSDI------------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
+LQ S I T + + V G+LP ++ L+ +R++ KA +K+
Sbjct: 625 --LLQKSQIEKLGLGPDDFIKTPTGDLFVKSSVRKGLLPEILENLLSARKRAKAELKK-- 680
Query: 586 LSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
+D + D RQ ALK++ANS+YG G + ++ VT GR+++ TK LV
Sbjct: 681 -ETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLV 739
Query: 644 EN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDID 693
E+ + +VIYGDTDS+M+ V G + + + ++L+ +
Sbjct: 740 ESRYTLDNGYQADAKVIYGDTDSVMVKLGVATVQEAMNQGKEAAEWVSSHFVPPIKLEFE 799
Query: 694 GVYKYMLLLKKKKYAALSISKLS--NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
VY LL+ KK+YA L S + + KM C KG++ VRRD L + + I
Sbjct: 800 KVYYPYLLINKKRYAGLYFSSSAEHHDKMDC----KGIETVRRDNCPLVANLINTCLQNI 855
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +D H K++ +DL + ++ L ITK+LT+ +
Sbjct: 856 L---------IDRDPDGAVTHAKEVISDLLCNRIDISQLVITKELTRTAQ 896
>gi|327401413|ref|YP_004342252.1| DNA polymerase Pol2 [Archaeoglobus veneficus SNP6]
gi|327316921|gb|AEA47537.1| DNA polymerase Pol2 [Archaeoglobus veneficus SNP6]
Length = 786
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 188/382 (49%), Gaps = 51/382 (13%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP+ +++ + L GR ++ E+LL+ ++ + P+ + E GE
Sbjct: 342 LLPMHYELSRMIRIPLDDVTRCGRGKQVEWLLMSEAYKLGELAPNPR---------EAGE 392
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 544
Y G VLEP +G ++ +I +DF S+YPSI+ +NI T+ + D
Sbjct: 393 K----------YEGAFVLEPARGLHEN-VICLDFASMYPSIMISFNISPDTLVIGKCDDC 441
Query: 545 DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLT 604
++ + + D G ++ L+E RR++K +MK+ + S+ DI+Q LK+
Sbjct: 442 NVAPEVGHKFRREPD-GFFKRILRMLIEKRREIKKIMKKLDRESNEYRLLDIKQATLKVL 500
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNV 664
NS YG G+ +R++ + A TA GR + + + + L EV+YGDTDS+ + +
Sbjct: 501 TNSFYGYTGWSLARWYCRECAEATTAWGRHFIKKSAQIAKELGLEVLYGDTDSIFVKKSG 560
Query: 665 NDYDSVFKIGNQIKSECNKLYKQLE------LDIDGVYKYMLLLKKKKYAALSISKLSNG 718
+ + ++K E KL +L ++ID Y + ++KK+YA L+ ++G
Sbjct: 561 LNLE-------ELKKEVRKLIGKLREEMPILIEIDEYYSAIFFVEKKRYAGLT----ADG 609
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
+++ +KG++V R DW +LA K VI IL ++ + +++K+
Sbjct: 610 RIV----VKGLEVRRGDWCELAKRVQKNVIEIILKDRD---------PEKAVNYVRKVIE 656
Query: 779 DLDNGFVPLTLLEITKQLTKAP 800
++ +G VP+ I K LT+ P
Sbjct: 657 EIKSGKVPIEDYIIYKGLTRKP 678
>gi|358375619|dbj|GAA92199.1| DNA polymerase delta large chain [Aspergillus kawachii IFO 4308]
Length = 1105
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 116/404 (28%), Positives = 200/404 (49%), Gaps = 62/404 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P N
Sbjct: 523 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQQLVIP------N 570
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K +E Y G V+EP +G+Y I +DF SLYPSIIQ +N+C+TT
Sbjct: 571 TKSNDEQD------------YEGATVIEPVRGYYGVPIATLDFASLYPSIIQAHNLCYTT 618
Query: 536 IP-------VRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ +++++D D +T + +V G+L +++L+ +R++ K K+
Sbjct: 619 LLNKNSVERLKLVKDEDYIVTPNGDMFCTAKVRKGLLSQILEELLSARKRAK---KELAT 675
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 676 ETDPFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVE 735
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ + +VIYGDTDS+M+ V++ + K+G + +K K ++L+ +
Sbjct: 736 ARYTIANGYSHDAKVIYGDTDSVMVKFGVDNLEEAMKLGQEASEYVSSKFLKPIKLEFEK 795
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
VY LL+ KK+YA L +N + KG++ VRRD L + V+ +IL E
Sbjct: 796 VYFPYLLINKKRYAGL---YWTNPNKYDKMDTKGIETVRRDNCLLVQNVIETVLQKILVE 852
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+ + +++K +DL + ++ L ITK L+K
Sbjct: 853 RD---------IDGAQDYVKDTISDLLQNKIDMSKLVITKALSK 887
>gi|400602303|gb|EJP69905.1| DNA polymerase family B [Beauveria bassiana ARSEF 2860]
Length = 1106
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 168/327 (51%), Gaps = 41/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR--------MLQDSD-- 545
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT+ R +++D D
Sbjct: 578 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLITRKDRIAQFNLVKDEDYI 637
Query: 546 ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALK 602
+T + + G+L +++L+ +R+Q K A+ P + L + RQ ALK
Sbjct: 638 VTPNGDMFVTTKQRKGLLAQILEELLSARKQAKRELAVETDPFKKAVL----NGRQLALK 693
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYG 653
++ANS+YG G + +A+ T+ GR+++ TK VE + + +VIYG
Sbjct: 694 ISANSVYGLTGATTGKLPCLAIASSTTSFGRQMIEKTKDEVEKKYCIANGYSHDAQVIYG 753
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLLLKKKKYAALSI 712
DTDS+M+ + K+G + + +K K ++L+ + VY LL+ KK+YA L
Sbjct: 754 DTDSVMVKFGTKELAEAMKLGEEAAAFVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYW 813
Query: 713 SKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+K KM + KG++ VRRD LA + V+ IL +D +Q +
Sbjct: 814 TKTEKYDKM----DTKGLETVRRDNCLLAQTVIEKVLRMIL---------IDRDVQGAQD 860
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTK 798
++K DL V ++ L ITK LTK
Sbjct: 861 YVKDTIADLLQNKVDMSKLVITKALTK 887
>gi|240147840|gb|ACS45156.1| POL1-like protein [Glomus etunicatum]
gi|240147864|gb|ACS45167.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMADPKESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKSLKELVNKQYKSLEI 118
>gi|68063595|ref|XP_673793.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56491898|emb|CAI02404.1| hypothetical protein PB300723.00.0 [Plasmodium berghei]
Length = 580
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 45/330 (13%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTLC 550
+ G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ + L +DITT
Sbjct: 63 FEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKNNDEISDLNKNDITT-- 120
Query: 551 EYLP--------EHQVDTGILPSEIKKLVESRRQVKALMK-QPNLSSDLLMQYDIRQKAL 601
+P + V G+LP +++L+ +R+ VKA+MK + N + +++ + RQ AL
Sbjct: 121 --VPGKNNFKFVKGNVKRGVLPLIVEELIRARKNVKAMMKNEQNPITKMVL--NGRQLAL 176
Query: 602 KLTANSMYGCLG-FPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVI 651
K++ANS+YG G + +A +T GR ++ TK VE N V+
Sbjct: 177 KISANSVYGYTGAAAGGQLPCLEIATSITTFGRSMIEKTKETVEAYYCKNNGFEHNATVV 236
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNK-LYKQLELDIDGVYKYMLLLKKKKYAAL 710
YGDTDS+M+ ND ++G +K ++L+ + VY LLL KK+YA L
Sbjct: 237 YGDTDSVMVKFGTNDVGEAMRLGKDAAERISKEFLHPIKLEFEKVYCPYLLLNKKRYAGL 296
Query: 711 SISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
+ + + KM C KG++ VRRD+ L + + V++++L E+ L +
Sbjct: 297 LYTNPNKHDKMDC----KGIETVRRDFCILIQQMMETVLNKLLIEKD---------LNSA 343
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
E+ K DL + ++LL +TK L KA
Sbjct: 344 IEYTKSKIKDLLTNNIDMSLLVVTKSLGKA 373
>gi|348689|gb|AAA72101.1| DNA dependent DNA polymerase [Thermococcus litoralis]
Length = 774
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 112/403 (27%), Positives = 191/403 (47%), Gaps = 48/403 (11%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
P+ ++ + G + E+ LL + ++ + P NK + EE
Sbjct: 329 FPMEAELAKLIGQSVWDVSRSSTGNLVEWYLLRVAYARNELAP------NKPDEEEY--- 379
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
K R + Y GG V EP+KG ++ II +DF SLYPSII +N+ T+ ++ D
Sbjct: 380 ---KRRLRTTYLGGYVKEPEKGLWEN-IIYLDFRSLYPSIIVTHNVSPDTLEKEGCKNYD 435
Query: 546 ITTL-----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSSDLLMQYDIRQ 598
+ + C+ P G +PS + L+ R+ +K MK + +L D RQ
Sbjct: 436 VAPIVGYRFCKDFP------GFIPSILGDLIAMRQDIKKKMKSTIDPIEKKML---DYRQ 486
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLNYEVIYGDTDS 657
+A+KL ANS YG +G+P +R++++ A VTA GR + + + + E ++V+Y DTD
Sbjct: 487 RAIKLLANSYYGYMGYPKARWYSKECAESVTAWGRHYIEMTIREIEEKFGFKVLYADTDG 546
Query: 658 LMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS 716
+ + + K + + N KL LEL+ +G Y + KK+YA +
Sbjct: 547 FYATIPGEKPELIKKKAKEFLNYINSKLPGLLELEYEGFYLRGFFVTKKRYAVID----E 602
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 776
G++ +G++VVRRDWS++A E V+ IL E S + ++++ E + K
Sbjct: 603 EGRITT----RGLEVVRRDWSEIAKETQAKVLEAILKEGSVEKAV--EVVRDVVEKIAKY 656
Query: 777 RTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
R VPL L I +Q+T+ + K + +++ R
Sbjct: 657 R-------VPLEKLVIHEQITRDLKDYKAIGPHVAIAKRLAAR 692
>gi|346974556|gb|EGY18008.1| DNA polymerase delta catalytic subunit [Verticillium dahliae
VdLs.17]
Length = 1104
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 164/326 (50%), Gaps = 40/326 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP---------VRMLQDSDI 546
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TTI ++ +D +
Sbjct: 577 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTIVDKKAIEKLGLKKDEDYIV 636
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + G+L +++L+ +R+Q K A+ P + L + RQ ALK+
Sbjct: 637 TPAGNTFVTAKQRKGLLAQILEELLAARKQAKRELAVETDPFKKAVL----NGRQLALKV 692
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + +A+ T+ GR+++ TK VE + + +VIYGD
Sbjct: 693 SANSVYGLTGATTGKLPCLEIASSTTSFGRQMIEKTKEEVEAKYTIANGYSHDAQVIYGD 752
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D K+G + +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 753 TDSVMVKFGTKDLAEAMKLGEEAAGFVSSKFVKPIKLEFEKVYFPYLLINKKRYAGLYWT 812
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
K KM + KG++ VRRD L + V+ IL +D +Q E+
Sbjct: 813 KPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVQGAQEY 859
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K + DL V ++ L ITK LTK
Sbjct: 860 VKDMIADLLQNKVDMSKLVITKALTK 885
>gi|209515117|ref|ZP_03263985.1| DNA-directed DNA polymerase [Burkholderia sp. H160]
gi|209504371|gb|EEA04359.1| DNA-directed DNA polymerase [Burkholderia sp. H160]
Length = 791
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 109/394 (27%), Positives = 177/394 (44%), Gaps = 65/394 (16%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
+ +I + +LP ++ V G R+ GG L + H + YV P+
Sbjct: 345 VTRIFAKTELLPFLLERATVTGLPADRS--GGSVAAFTHLYMPRMHRQGYVAPNL----- 397
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
G+ G AA GG V++ + G YD ++L D+ SLYPSII+ + I
Sbjct: 398 ---GDVAG----------AASPGGFVMDSRPGLYDSVLVL-DYKSLYPSIIRTFLIDPLG 443
Query: 536 IPVRMLQDSDITTLCEYLPEHQVDT-GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
+ ML D+ ++ +L T LPS + ++ ++R K +P
Sbjct: 444 LVEGMLYPDDVHSVPGFLGARFSRTRHCLPSIVAQVWQAREAAKREHNKP---------- 493
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 654
+ALK+ N+ YG LG RFF LA+ +T +G EI+ T+ L+E YEVIYGD
Sbjct: 494 --LSQALKIIMNAFYGVLGSSGCRFFDPRLASSITMRGHEIMHTTRELIEAQGYEVIYGD 551
Query: 655 TDSLMISC-NVNDYDSVFKIGNQIKSECNKLYKQ-----------LELDIDGVYKYMLLL 702
TDS + + D + +IG + N ++Q LEL + Y+ +
Sbjct: 552 TDSTFVWLKHAQDEEDAARIGRALVEHINAAWRQKLQTRFGIDSALELQFERHYRRFFMP 611
Query: 703 --------KKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
KK+YA L++ L +G+ KG++ VR DW+ LA + + + +I +
Sbjct: 612 TVRGAEEGSKKRYAGLTV--LPDGREDVV--YKGLETVRTDWTPLAQQFQQELYRRIFKQ 667
Query: 755 QSYTDY-------SLDDRLQNIHEHMKKIRTDLD 781
Q Y DY +L RL + + K++R +D
Sbjct: 668 QPYQDYVRDYVRDTLAGRLDDQLVYRKQLRRPID 701
>gi|307595059|ref|YP_003901376.1| DNA polymerase Pol2 [Vulcanisaeta distributa DSM 14429]
gi|307550260|gb|ADN50325.1| DNA polymerase Pol2 [Vulcanisaeta distributa DSM 14429]
Length = 784
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/373 (28%), Positives = 189/373 (50%), Gaps = 53/373 (14%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP AIQ++++ G L + R E+++ + ++ + P N++E
Sbjct: 354 LLPFAIQLSSISGLPLDQVGAASVGARVEWMIFYEAVKRGELAP------NREE------ 401
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 544
R Y G +VLEP+ G ++ I ++DF+S+YPSI+ +YN+ T+ + D
Sbjct: 402 ------RPYETYKGAVVLEPRPGLHEN-IAVIDFSSMYPSIMMKYNVSPDTLVLGDCGDC 454
Query: 545 DITTLCEY----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
+ Y PE G+ P ++ LVESRR+V+ LMK+ +S + + RQ+A
Sbjct: 455 YVAPEVNYKFRRSPE-----GLYPGLLRILVESRRRVRDLMKKYPENSPEWVLLNERQRA 509
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LK+ AN+MYG G+ +R++ + +A VTA GR +L +L +IYGDTDSL +
Sbjct: 510 LKVMANAMYGYCGWLGARWYRREVAEAVTAWGRNLLRTVIEKARSLGLPIIYGDTDSLFV 569
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNGK 719
N D V + N + +E E+ +D VY+ +L + KK+Y L++ G+
Sbjct: 570 R---NISDKVDALINYVNNELG-----FEVKVDKVYRRVLFTEAKKRYVGLTVE----GE 617
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DEQSYTDYSLDDRLQNIHEHMKKI 776
+ +I G + VR DW+++A + + V +L D Y ++++ + +K
Sbjct: 618 V----DIVGFEAVRGDWAEIAKDVQENVAEIVLTTGDVGKAISY-----VKSVIDKVKAY 668
Query: 777 RTDLDNGFVPLTL 789
+ D+D+ + TL
Sbjct: 669 QFDIDDVIIWKTL 681
>gi|70943300|ref|XP_741713.1| DNA polymerase delta catalytic subunit [Plasmodium chabaudi
chabaudi]
gi|56520266|emb|CAH84358.1| DNA polymerase delta catalytic subunit, putative [Plasmodium
chabaudi chabaudi]
Length = 694
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/330 (31%), Positives = 172/330 (52%), Gaps = 45/330 (13%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTLC 550
+ G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ + L +DITT
Sbjct: 177 FEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKNNDEISDLNKNDITT-- 234
Query: 551 EYLP--------EHQVDTGILPSEIKKLVESRRQVKALMK-QPNLSSDLLMQYDIRQKAL 601
+P + V G+LP +++L+++R+ VKA+MK + N + +++ + RQ AL
Sbjct: 235 --VPGKNNFKFVKGNVKRGVLPLIVEELIKARKNVKAMMKNEQNPITKMVL--NGRQLAL 290
Query: 602 KLTANSMYGCLG-FPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVI 651
K++ANS+YG G + +A +T GR ++ TK VE N V+
Sbjct: 291 KISANSVYGYTGAAAGGQLPCLEIATSITTFGRSMIEKTKETVEAYYCKKNGFEHNATVV 350
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNK-LYKQLELDIDGVYKYMLLLKKKKYAAL 710
YGDTDS+M+ ND ++G +K ++L+ + VY LLL KK+YA L
Sbjct: 351 YGDTDSVMVKFGTNDVGEAMRLGKDAADRISKEFLNPIKLEFEKVYCPYLLLNKKRYAGL 410
Query: 711 SISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
+ + + KM C KG++ VRRD+ L + + V++++L E+ L +
Sbjct: 411 LYTNPNKHDKMDC----KGIETVRRDFCILIQQMMETVLNKLLIEKD---------LNSA 457
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
E+ K DL + ++LL +TK L K
Sbjct: 458 IEYTKSKIKDLLTNNIDMSLLVVTKSLGKT 487
>gi|290985690|ref|XP_002675558.1| predicted protein [Naegleria gruberi]
gi|284089155|gb|EFC42814.1| predicted protein [Naegleria gruberi]
Length = 1019
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 123/405 (30%), Positives = 203/405 (50%), Gaps = 49/405 (12%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
I+++ +L ++ I++ V G +S L G+ + LL ++ Y++P K
Sbjct: 422 IRLLEKLLIIINYIEMARVTGIPVSFILKRGQQIKVISQLLRKAKKEEYLMPTISKSGKK 481
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ +E GE ++ Y GG VL PK G+YD I +DF SLYPSI+ +N+C+TT
Sbjct: 482 ESLDEEGETSE------ETYEGGFVLSPKTGYYDIPITTLDFASLYPSIMIAHNLCYTT- 534
Query: 537 PVRMLQDSDITTLCE----------YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+L+ D+ L E Y + +V G+LP +++L+++R+Q K M +
Sbjct: 535 ---LLKKEDLAKLSEDQYVKTPSGDYFIKREVQQGLLPLVLEELLQARKQAKKDMDK--- 588
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
++D L + + RQ ALK++ANS+YG G ++ VT+ GRE++ +TK +VE
Sbjct: 589 ATDPLEKAVMNGRQLALKISANSVYGFTGAQVGMLPCLEISQSVTSFGREMIQHTKEMVE 648
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDG 694
N VIYGDTDS+M+ D ++G E +K + K ++L+ +
Sbjct: 649 ENYTIKNGYETNAVVIYGDTDSVMVKFGTKDIRKAMELGLHASQEISKTFVKPIKLEFEK 708
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LLL KK+YA L +K KM + KG+ VRRD L + IL
Sbjct: 709 VYYPYLLLSKKRYAGLLWTKPEKFDKM----DAKGIVTVRRDNCALVRNLVNTCLHLILI 764
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
++S +++ + K + +DL + +++L ITK L K
Sbjct: 765 KRS---------IESAVNYAKSVISDLLMNRMDISMLVITKALVK 800
>gi|240147846|gb|ACS45159.1| POL1-like protein [Glomus etunicatum]
gi|240147855|gb|ACS45163.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMADPKESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKSLKELVNKRYKSLEI 118
>gi|2827903|gb|AAB99910.1| DNA polymerase delta catalytic subunit [Mus musculus]
Length = 1105
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 165/326 (50%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDI-T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++A
Sbjct: 639 PTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVSA 695
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDTD
Sbjct: 696 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDTD 755
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + + + + + L+ VY LL+ KK+YA L S
Sbjct: 756 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFKKVYFPYLLISKKRYAGLLFSSR 815
Query: 716 SNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
S+ KM C KG++ VRRD L + + +IL +D H
Sbjct: 816 SDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAHA 862
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 863 KDVISDLLCNRIDISQLVITKELTRA 888
>gi|344257341|gb|EGW13445.1| DNA polymerase delta catalytic subunit [Cricetulus griseus]
Length = 1056
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 530 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 589
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++
Sbjct: 590 PTGDEFV-KSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVS 645
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE N N +V+YGDT
Sbjct: 646 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLENGYNANAKVVYGDT 705
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 706 DSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 765
Query: 715 L--SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
++ +M C KG++ VRRD L + + +IL +D H
Sbjct: 766 QPDTHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAH 812
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 813 AKDVISDLLCNRIDISQLVITKELTRA 839
>gi|240147851|gb|ACS45161.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMTDPRESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKSLKELVNKQYKSLEI 118
>gi|3122029|sp|P97283.1|DPOD1_MESAU RecName: Full=DNA polymerase delta catalytic subunit
gi|1840089|gb|AAB47254.1| DNA polymerase delta catalytic subunit [Mesocricetus auratus]
Length = 1103
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 166/326 (50%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDI-T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 577 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 636
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++A
Sbjct: 637 PTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVSA 693
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE N N +V+YGDTD
Sbjct: 694 NSVYGFTGAEVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLENGYNANAKVVYGDTD 753
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 754 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSQ 813
Query: 716 --SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
++ +M C KG++ VRRD L + + +IL +D H
Sbjct: 814 PDTHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAHA 860
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 861 KDVISDLLCNRIDISQLVITKELTRA 886
>gi|324120690|dbj|BAJ78736.1| DNA polymerase delta catalytic subunit [Nipponatelura sp. 66-1]
Length = 1006
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 120/403 (29%), Positives = 193/403 (47%), Gaps = 58/403 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL EK +V+P G ++
Sbjct: 424 KLMCIINYMEMA----RVTGVPLSCLLTRGQQIKVVSQLLRKAREKDFVIPTYSVGVQEE 479
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ Y G V+EPK+G+Y I +DF+SLYPSI+ +N+C+T++
Sbjct: 480 Q-----------------YEGATVIEPKRGYYADPIATLDFSSLYPSIMMAHNLCYTSLL 522
Query: 538 VRMLQDSDITTLCEY--------LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
++D T +Y + V G+LP ++ L+ +R++ KA +K +D
Sbjct: 523 QGSVKDKLGLTPDQYTKTPAGNFFVKTSVRKGLLPEILENLLAARKKAKADLKD---ETD 579
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE--- 644
L + D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 580 PLRRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVERKY 639
Query: 645 ---NLNYE---VIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
N Y VIYGDTDS+M+ V + +G + +K K ++L+ + VY
Sbjct: 640 CIANGFYHDAVVIYGDTDSVMVKFGVKSLEKAMALGREAAEYVSSKFIKPIKLEFEKVYF 699
Query: 698 YMLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +K + KM C KG++ VRRD L + + ++L
Sbjct: 700 PYLLINKKRYAGLYFTKADTYDKMDC----KGLETVRRDNCPLVANMMNTCLQKLL---- 751
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+D + K++ DL + ++ L ITK+L K+
Sbjct: 752 -----IDRDPDGAVSYAKQVIADLLCNRIDISQLVITKELAKS 789
>gi|1840091|gb|AAB47255.1| DNA polymerase delta' [Mesocricetus auratus]
Length = 1102
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 166/326 (50%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDI-T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 576 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 635
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++A
Sbjct: 636 PTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVSA 692
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE N N +V+YGDTD
Sbjct: 693 NSVYGFTGAEVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLENGYNANAKVVYGDTD 752
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 753 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSQ 812
Query: 716 --SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
++ +M C KG++ VRRD L + + +IL +D H
Sbjct: 813 PDTHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAHA 859
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 860 KDVISDLLCNRIDISQLVITKELTRA 885
>gi|324120758|dbj|BAJ78770.1| DNA polymerase delta catalytic subunit [Eretes sticticus]
Length = 998
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/397 (30%), Positives = 191/397 (48%), Gaps = 55/397 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I++ V G L+ L G + LL +Y +P A +G+
Sbjct: 430 IEMARVTGVPLTSLLTKGEQVKVVAQLLRHARAHNYFMP----------------AVQGQ 473
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITT- 548
+ +Y G V+EP +G+Y I +DF+SLYPSI+ +N+C+TT+ ++ +D T
Sbjct: 474 ANSEQSYEGATVIEPVRGYYTDPIATLDFSSLYPSIMIAHNLCYTTLINKVTKDKLGLTN 533
Query: 549 --LCEYLPEH-----QVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQ 598
+ E H V G+LP ++ L+ +R++ KA +K P + S L D +Q
Sbjct: 534 DQITETPAGHLFVKSTVREGLLPQILQSLLSARKRTKAELKNATDPVIRSVL----DGKQ 589
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-----NLNYE---- 649
ALK++ANS+YG G + ++ VTA GR ++ TK LVE N YE
Sbjct: 590 LALKISANSVYGFTGATVGKLPCLEISGSVTAYGRTMIEQTKQLVEQHYCLNNGYESDSK 649
Query: 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYA 708
VIYGDTDS+M++ V + ++G + + K ++L+ + VY LL+ KK+YA
Sbjct: 650 VIYGDTDSVMVNFKVQSLERSMELGREAAELISTNFIKPIKLEFEKVYYPYLLINKKRYA 709
Query: 709 ALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
L +K KM C KG++ VRRD L + ++L + D +Q
Sbjct: 710 GLYYTKTDKYDKMDC----KGIETVRRDNCLLVVNVINTCLQKLL-----INRDPDGAVQ 760
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
K++ +L V ++ L ITK+LTKA GK
Sbjct: 761 ----FAKQVIANLLRNQVDISQLVITKELTKADYAGK 793
>gi|240147824|gb|ACS45148.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S++ Q DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T KGR
Sbjct: 3 RKYVKGLMADPKASAEY-AQVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITTKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
EIL +T L E + EVIYGDTDS+MI+ N ++ ++G +K + NK YK LE+
Sbjct: 62 EILQDTVDLAEKESMEVIYGDTDSIMINTNTSEMQKALEVGKILKEKVNKRYKLLEI 118
>gi|170067371|ref|XP_001868453.1| DNA polymerase delta catalytic subunit [Culex quinquefasciatus]
gi|167863529|gb|EDS26912.1| DNA polymerase delta catalytic subunit [Culex quinquefasciatus]
Length = 1100
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 124/410 (30%), Positives = 192/410 (46%), Gaps = 61/410 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L G+ + LL + Y++P Q + +
Sbjct: 520 KLMCIVNYMEMA----RVTGVPLQCLLTRGQQIKVMSQLLRKTRKCGYLIPSYQSSGSDE 575
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+
Sbjct: 576 Q-----------------YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLL 618
Query: 538 VR-------MLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK---QPN 585
L D I T + V GILP ++ L+ +R++ KA +K P
Sbjct: 619 QPGFNKEKLGLTDDQITRTPANNTFVKASVRKGILPEILESLLGARKRAKADLKVETDPF 678
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN 645
S L D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 679 KRSVL----DGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQ 734
Query: 646 L-----NYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGV 695
YE VIYGDTDS+M++ V + ++G + + K K ++L+ + V
Sbjct: 735 RYTAENGYENDAVVIYGDTDSVMVNFGVKSLERSMELGREAAEFVSAKFVKPIKLEFEKV 794
Query: 696 YKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
Y LL+ KK+YA L ++ KM C KG++ VRRD S L + + ++L E
Sbjct: 795 YYPYLLINKKRYAGLYFTRPDKYDKMDC----KGIETVRRDNSPLVANMMNSCLQKLLIE 850
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++ + EH K++ DL + ++ L ITK+L K K
Sbjct: 851 RN---------PEGAVEHAKQVIADLLCNRIDISQLVITKELAKTDYAAK 891
>gi|260826580|ref|XP_002608243.1| hypothetical protein BRAFLDRAFT_125058 [Branchiostoma floridae]
gi|229293594|gb|EEN64253.1| hypothetical protein BRAFLDRAFT_125058 [Branchiostoma floridae]
Length = 1286
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 197/413 (47%), Gaps = 57/413 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G L+ L G+ + LL E+ V+P Q + ++
Sbjct: 715 MEMARVTGVPLTYLLTRGQQIKVMSQLLRKAREQDLVIPAMQSSVSDEQ----------- 763
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---P---VRMLQD 543
Y G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + D
Sbjct: 764 ------YEGATVIEPAKGYYDTPIATLDFSSLYPSIMMAHNLCYTTLLSTPSSRASLSPD 817
Query: 544 SDITTLC-EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQK 599
I T + + + G+LP ++ L+ +R++ KA +K+ P S L D RQ
Sbjct: 818 QFIKTPSGNFFVKKTLRKGLLPEILENLLSARKKAKADLKKETDPFRKSVL----DGRQL 873
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEV 650
ALK++ANS+YG G + ++ VT+ GR ++ T+ VE + +V
Sbjct: 874 ALKISANSVYGFTGAQVGKLPCLEISQSVTSFGRTMIEQTRQFVEETYRIALGHKHDAKV 933
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAA 709
IYGDTDS+M+ V ++G + + K ++L+ + VY LL+ KK+YA
Sbjct: 934 IYGDTDSVMVKFGVETVAEAMELGKEAAQAVSAKFPHPVKLEFEKVYFPYLLINKKRYAG 993
Query: 710 LSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 768
L ++ + KM C KG++ VRRD L + + ++L Y D Q
Sbjct: 994 LYFTRPEIHDKMDC----KGIETVRRDNCPLVAHLINTCLQKLL---IYRDP------QG 1040
Query: 769 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRR 821
+H K++ +DL V ++ L ITK+LTK EG + Q + R R+R
Sbjct: 1041 AIDHAKQVISDLLCNRVDISQLVITKELTK--EGDEYAAKQAHVELAERMRKR 1091
>gi|149056045|gb|EDM07476.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform
CRA_c [Rattus norvegicus]
gi|149056048|gb|EDM07479.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform
CRA_c [Rattus norvegicus]
Length = 1103
Score = 131 bits (330), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 166/326 (50%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDI-T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 577 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 636
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++A
Sbjct: 637 PTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVSA 693
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDTD
Sbjct: 694 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGYDANAKVVYGDTD 753
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 754 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSR 813
Query: 716 SNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
S+ +M C KG++ VRRD L + + +IL +D H
Sbjct: 814 SDAHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAHA 860
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 861 KDVISDLLCNRIDISQLVITKELTRA 886
>gi|440804295|gb|ELR25172.1| polymerase (DNA directed), delta 1, catalytic subunit [Acanthamoeba
castellanii str. Neff]
Length = 1003
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 123/426 (28%), Positives = 209/426 (49%), Gaps = 67/426 (15%)
Query: 403 VEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHE 462
V IK +L + K+MC +N I++ V G ++ L G+ + L +
Sbjct: 399 VYCIKDALLPQRLLDKLMCIINY----IEMARVTGVPIAFLLTRGQQIKVLSQLYRIANT 454
Query: 463 KSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
+ ++P + K TGE KG Y G +V+ PK +YD I +DF SLY
Sbjct: 455 EDLLIPAVKVAK------PTGEDGKG-------YKGAIVIAPKTAYYDVPIATLDFASLY 501
Query: 523 PSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEH-------------QVDTGILPSEIKK 569
PSI+ +N+C++T +L ++ + + PE + G+LP +
Sbjct: 502 PSIMIAHNLCYST----LLAPGEVNS---HPPESYERSPGGECFVREETKPGLLPRILNG 554
Query: 570 LVESRRQVKALM-KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
L+E+R + KA M K+ N ++ + RQ ALK++ANS+YG G + +++ V
Sbjct: 555 LLEARARAKAEMKKETNPFKQAVL--NGRQLALKVSANSVYGFTGATIGKLPCLAISSAV 612
Query: 629 TAKGREILLNTKSL------VEN---LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ--- 676
TA GRE++ T++ VEN +VIYGDTDS+M++ V + K+G +
Sbjct: 613 TAYGREMIEKTQATVLERYRVENGYSHTADVIYGDTDSVMVNFGVKTVEEAMKLGREAAE 672
Query: 677 -IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRD 735
I C + + ++L+ + VY LL+ KK+YA L + + + KG++ VRRD
Sbjct: 673 YITKHCFE--QPIKLEFEKVYYPYLLISKKRYAGLWWGRPDKYDHM---DAKGIETVRRD 727
Query: 736 WSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQ 795
L + + +IL E++ D ++D ++K+I +DL + L+LL ITKQ
Sbjct: 728 NCALVRNVVQECLDRILIERN-IDSAVD--------YVKQIISDLLCNRLDLSLLVITKQ 778
Query: 796 LTKAPE 801
+++ E
Sbjct: 779 ISRNSE 784
>gi|324120738|dbj|BAJ78760.1| DNA polymerase delta catalytic subunit [Anacanthocoris striicornis]
Length = 1091
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 121/408 (29%), Positives = 195/408 (47%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL E Y+LP + + +
Sbjct: 512 KLMCVINYMEMA----RVTGVSLSALLTRGQQIKVMSQLLRKSMESGYLLPTHRVNDSSE 567
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
+ E G V+EP KG+Y I +DF+SLYPSI+ +N+C++T+
Sbjct: 568 QFE-----------------GATVIEPLKGYYKDPIATLDFSSLYPSIMIAHNLCYSTLI 610
Query: 537 ------PVRMLQDSDITTLCE-YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ + D TT CE Y + V G+LP ++ L+ +R++ K +K +D
Sbjct: 611 HAQQRNALGLSPDQYSTTPCENYFVKTSVRKGLLPQILESLLTARKKAKFDLKN---ETD 667
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
+ D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 668 PFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIERTKQEVEQRY 727
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYK 697
+ V+YGDTDS+M+ V+ + K+G + + K ++L+ + VY
Sbjct: 728 CIKNGYKFDSIVVYGDTDSVMVKFGVDSLEEAMKLGKEAAEYVSTKFISPIKLEFEKVYW 787
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +KL KM C KG++ VRRD L + + ++L ++
Sbjct: 788 PYLLINKKRYAGLYYTKLDEYDKMDC----KGLETVRRDNCPLVANLLNTCLQKLLIDKD 843
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
D +++ Q I +DL + ++ L ITK+L K GK
Sbjct: 844 -PDAAINYAKQQI--------SDLLCNRLDISQLVITKELAKTDYAGK 882
>gi|240147788|gb|ACS45130.1| POL1-like protein [Glomus etunicatum]
Length = 117
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S++ Q IRQKALKLTANSMYGCLGF NSRF+A+PLA L+T KGR
Sbjct: 2 RKYVKGLMADPKASAEY-AQLAIRQKALKLTANSMYGCLGFTNSRFYAKPLAVLITTKGR 60
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
EIL +T L E + EVIYGDTDS+MI+ N ++ ++G +K + NK YK LE+
Sbjct: 61 EILQDTVDLAEKESMEVIYGDTDSIMINTNTSEMQKALEVGKILKEKVNKRYKLLEI 117
>gi|66475912|ref|XP_627772.1| DNA polymerase delta catalytic subunit. DNAQ-like 3'-5'
exonuclease; RNAseH fold [Cryptosporidium parvum Iowa
II]
gi|32399018|emb|CAD98258.1| DNA polymerase family B subunit, probable [Cryptosporidium parvum]
gi|46229188|gb|EAK90037.1| DNA polymerase delta catalytic subunit. DNAQ-like 3'-5'
exonuclease; RNAseH fold [Cryptosporidium parvum Iowa
II]
Length = 1084
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/402 (28%), Positives = 197/402 (49%), Gaps = 52/402 (12%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+++M L + P I++ V G + L G+ + +L ++++P KN+
Sbjct: 505 LRLMKHLKLFPNIIEMARVTGTTIDILLSRGQQIKVTSQILRKCKSTNFLMPTV---KNQ 561
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT- 535
+G+ Y G VLEP KGFY I +DF SLYPSI+ +NIC++T
Sbjct: 562 SDGDN-------------QYEGATVLEPLKGFYKDPISTLDFASLYPSIMIAHNICYSTL 608
Query: 536 IPVRMLQDSD-----ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLS 587
IP L++ + V GILP +++L+ +R++ K M++ P L
Sbjct: 609 IPPLNLKNVPEDLRKTSPTGHSFVLSSVRKGILPLIVEELIAARKKAKKEMEEATDPTLI 668
Query: 588 SDLLMQYDIRQKALKLTANSMYGCLG-FPNSRFFAQPLAALVTAKGREILLNTKSLVENL 646
S L + RQ ALK +ANS+YG G + L+ +T+ GR ++ TK+ VE +
Sbjct: 669 SIL----NGRQLALKTSANSVYGYTGAVAGGQLPCLELSTSITSYGRAMIDITKNEVEKI 724
Query: 647 ---------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVY 696
+ +V+YGDTDS+MI V+D K+G + + +KL+ K ++L+ + VY
Sbjct: 725 YRKENGYSADAKVVYGDTDSVMIQFGVSDIGEAMKLGLEAATSISKLFVKPIKLEFEKVY 784
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA + + I + KG++ VRRD L + V+ +IL
Sbjct: 785 CPFLLMNKKRYAGVLFKNPQFHERI---DCKGIETVRRDNCLLVQKVVDTVLKKIL---- 837
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+D ++ ++ + + +DL + L+LL ++K L K
Sbjct: 838 -----VDKDVEAAKQYTRNVISDLLKNKIDLSLLVVSKSLGK 874
>gi|412988964|emb|CCO15555.1| DNA polymerase delta catalytic subunit [Bathycoccus prasinos]
Length = 1114
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/394 (29%), Positives = 193/394 (48%), Gaps = 50/394 (12%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I+++ V G LS L G+S + LL ++ ++P ++ N + GE
Sbjct: 536 IEMSRVTGVPLSFLLARGQSIKVMSQLLRKARQRGLIIPARRDRGNGPNAQLEGEV---- 591
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 549
AY G VL+ K G+Y+ I +DF SLYPSI+ +N+C+ T +++ D+ L
Sbjct: 592 -----AYEGATVLDAKAGYYELPIATLDFASLYPSIMMAHNLCYCT----LVKQHDVADL 642
Query: 550 C--EYLPEHQVDT--------GILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIR 597
Y D GILP +++L+ +R++ K +K+ ++D L D R
Sbjct: 643 PPEAYTKAPTGDVFVKSTQFKGILPEILEELLSARKRAKQDLKK---ATDPLERAVLDGR 699
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NY 648
Q ALK++ANS+YG G + ++A TA GR+++ +TK LVE +
Sbjct: 700 QLALKISANSVYGFTGATVGQLPCLEISASTTAYGRQMIDHTKKLVEEKYTTANGYEGDA 759
Query: 649 EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKY 707
EVIYGDTDS+MI N + + + G + + + K ++L+ + Y LL+ KK+Y
Sbjct: 760 EVIYGDTDSVMIKFNCKELKTSMEYGLEAADYVSATFTKPIKLEFEKCYWPYLLISKKRY 819
Query: 708 AALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
A L N + + KG++ VRRD L + + +++IL +D +
Sbjct: 820 AGL---LWENSEKWTKMDTKGIETVRRDNCLLVRQVVETCLTKIL---------MDRDIP 867
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
++++ +DL + L+LL ITK LTK +
Sbjct: 868 GAVKYVQNTISDLLMNKLDLSLLVITKGLTKTAD 901
>gi|46125595|ref|XP_387351.1| hypothetical protein FG07175.1 [Gibberella zeae PH-1]
Length = 1104
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 167/326 (51%), Gaps = 40/326 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDITTLCEYLP 554
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT + + ++ ++ +Y+
Sbjct: 577 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLVSKKAIEAFNLQKDEDYIV 636
Query: 555 EHQVDT--------GILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
DT G+L +++L+ +R+Q K A+ P + L + RQ ALK+
Sbjct: 637 TPNGDTFVTIKQRKGLLAQILEELLSARKQAKRELAVETDPFKKAVL----NGRQLALKI 692
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + +A+ T+ GR+++ TK VE + + +VIYGD
Sbjct: 693 SANSVYGLTGATTGKLPCLEIASSTTSFGRKMIEKTKEEVEGRYNIANGYSHDAQVIYGD 752
Query: 655 TDSLMISCNVNDYDSVFKIGNQI-KSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+MI D K+G + K +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 753 TDSVMIKFGTKDLQEAMKLGEEASKYVSSKFVKPIKLEFEKVYFPYLLINKKRYAGLYWT 812
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
K KM + KG++ VRRD L + V+ IL +D + E+
Sbjct: 813 KPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVPGAQEY 859
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K+ DL V ++ L ITK LTK
Sbjct: 860 VKETIADLLQNKVDMSKLVITKALTK 885
>gi|240147808|gb|ACS45140.1| POL1-like protein [Glomus etunicatum]
Length = 117
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S++ Q DIRQKALKLTANSMYGCLGF NSRF+A+PLA L+T KG
Sbjct: 2 RKYVKGLMADPKASAEY-AQLDIRQKALKLTANSMYGCLGFTNSRFYAKPLAVLITTKGG 60
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
EIL +T L E + EVIYGDTDS+MI+ N ++ ++G +K + NK YK LE+
Sbjct: 61 EILQDTVDLAEKESMEVIYGDTDSIMINTNTSEMQKALEVGKILKEKVNKRYKLLEI 117
>gi|255956273|ref|XP_002568889.1| Pc21g18980 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590600|emb|CAP96795.1| Pc21g18980 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1112
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/405 (28%), Positives = 201/405 (49%), Gaps = 64/405 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P+
Sbjct: 520 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKAREQQLVIPN------ 567
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K + + Y G V+EPK+G+Y + +DF SLYPSIIQ +N+C+TT
Sbjct: 568 ------------SKPQDEQDYEGATVIEPKRGYYGVPVATLDFASLYPSIIQAHNLCYTT 615
Query: 536 I-------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ + + +D D +T + +V G+L +++L+ +R++ K K+
Sbjct: 616 LLNKSSVEKLNLKKDEDYIVTPNGDMFCTTKVRKGLLSQILEELLSARKRAK---KELAT 672
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 673 ETDSFKKAVLNGRQLALKVSANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVE 732
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDG 694
+ + EVIYGDTDS+M+ V + K+G + +K K ++L+ +
Sbjct: 733 ARYTIANGYSHDAEVIYGDTDSVMVKFGVTELADAMKLGEEAADFVSSKFIKPIKLEFEK 792
Query: 695 VYKYMLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L + + + KM + KG++ VRRD + + V+++IL
Sbjct: 793 VYFPYLLINKKRYAGLYWTNPNKHDKM----DTKGIETVRRDNCLMVQNVIETVLNKIL- 847
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+D + +++K +DL + ++ L ITK L+K
Sbjct: 848 --------IDRDIDGAQDYVKATISDLLQNKIDMSKLVITKALSK 884
>gi|260790067|ref|XP_002590065.1| hypothetical protein BRAFLDRAFT_123433 [Branchiostoma floridae]
gi|229275253|gb|EEN46076.1| hypothetical protein BRAFLDRAFT_123433 [Branchiostoma floridae]
Length = 231
Score = 131 bits (329), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/97 (58%), Positives = 75/97 (77%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
MLILATF P ++ G +DV G+ +K S+D D +G L++SSIPGKG KI+TA +GWA
Sbjct: 50 MLILATFFPASETGGGNLDVIGEFLKTSVDFGDLIGIQLIMSSIPGKGEIKIMTAAMGWA 109
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AE+++TRF+ +WVGARG EFDWKYIQ SL+SNI L+
Sbjct: 110 TAELVMTRFIPMWVGARGVEFDWKYIQMSLESNINLV 146
>gi|344299649|gb|EGW30002.1| DNA polymerase delta catalytic subunit [Spathaspora passalidarum
NRRL Y-27907]
Length = 1079
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/378 (30%), Positives = 187/378 (49%), Gaps = 55/378 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A V G S L G+ + L E+ ++P+ K
Sbjct: 500 KLMCLVNYTEMA----RVTGVPFSYLLSRGQQIKVISQLFRKCLEEDIIIPNM-----KS 550
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-- 535
EG T E Y G V+EP +G+YD I +DF+SLYPSI+ +N+C+TT
Sbjct: 551 EG--TNEE----------YEGATVIEPIRGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL 598
Query: 536 ----IPVRMLQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LS 587
I L + D T ++ + GILP+ + +L+ +R++ KA +K+
Sbjct: 599 SKSAIQAYGLTEEDYTRTPNGDFFVKSHKRQGILPTILNELLTARKKAKADLKKETDPFK 658
Query: 588 SDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
D+L + RQ ALK++ANS+YG G + +++ VTA GRE++ TK+ V+
Sbjct: 659 KDVL---NGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAFGREMIEKTKNEVQEYY 715
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYK 697
+ +VIYGDTDS+M+ D ++ K+G + + + +K ++L+ + VY
Sbjct: 716 SKKNGHPFDAQVIYGDTDSVMVKFGYQDLETCMKLGEEAANYVSTKFKSPIKLEFEKVYY 775
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE-- 754
LL+ KK+YA L ++ KM + KG++ VRRD +L V+ IL+E
Sbjct: 776 PYLLINKKRYAGLYWTRPDKFDKM----DTKGIETVRRDNCRLVQNVITKVLQFILEERD 831
Query: 755 ----QSYTDYSLDDRLQN 768
Q + ++ D LQN
Sbjct: 832 VEKAQRFVKQTIADLLQN 849
>gi|5011|emb|CAA41968.1| catalytic subunit DNA polymerase delta [Schizosaccharomyces pombe]
Length = 1084
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 175/348 (50%), Gaps = 46/348 (13%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRMLQDSD--I 546
Y G V+EP KG+YD I +DF+SLYPSI+Q +N+C+TT+ +++ QD D +
Sbjct: 566 YEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDYSV 625
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKALKL 603
T +Y + V G+LP + L+ +R++ KA +K+ P + L D RQ ALK+
Sbjct: 626 TPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKKETDPFKKAVL----DGRQLALKV 681
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G N R +++ VT+ GR+++ TK +VE + + VIYGD
Sbjct: 682 SANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIYGD 741
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYM--LLLKKKKYAALSI 712
TDS+M+ V K+G + N + Q I+ + LL+ KK+YA L
Sbjct: 742 TDSVMVKFGVKTLPEAMKLGEE---AANYVSDQFPNPINWSFSTFPYLLISKKRYAGLFW 798
Query: 713 SKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
++ + KM + KG++ VRRD L S + ++L +D ++
Sbjct: 799 TRTDTYDKM----DSKGIETVRRDNCPLVSYVIDTALRKML---------IDQDVEGAQL 845
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
KK+ +DL + ++ ITK L+K K + + L+ R R
Sbjct: 846 FTKKVISDLLQNKIDMSQHVITKALSKTDYAAK--MAHVELAERMRKR 891
>gi|324120704|dbj|BAJ78743.1| DNA polymerase delta catalytic subunit [Phraortes illepidus]
Length = 1093
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/402 (28%), Positives = 196/402 (48%), Gaps = 59/402 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +++ V G L+ L G+ + LL EK Y++P
Sbjct: 518 KLMCIINYM----EMSRVTGVSLACLLTRGQQIKVVSQLLRKAREKGYLMP--------- 564
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G ++ + G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 565 --------VYASGVQEEQFEGATVIEPRKGYYSDPITTLDFSSLYPSIMMAHNLCYTTLV 616
Query: 538 ------VRMLQDSDITTL--CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ + D I T C ++ + V G+LP ++ L+ +R++ K +K +D
Sbjct: 617 NGPPDKLSLTPDQYIKTPASCTFV-KSSVRKGLLPEILESLLSARKKAKVDLKN---ETD 672
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
+ D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 673 PFKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQRY 732
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ VIYGDTDS+M+ V + ++G + +K + ++L+ + VY
Sbjct: 733 CIANGYKHDASVIYGDTDSVMVKFGVTTLEEAMELGREAADYVTSKFVRPIQLEFEKVYF 792
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L E+
Sbjct: 793 PYLLINKKRYAGLYFTRPDKYDKMDC----KGIETVRRDNCPLVANMMNTCLQKLLIERD 848
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
D ++ + K++ +DL V ++ L ITK+LTK
Sbjct: 849 -PDGAV--------TYTKEVISDLLCNRVDISKLVITKELTK 881
>gi|312376112|gb|EFR23299.1| hypothetical protein AND_13138 [Anopheles darlingi]
Length = 1092
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 125/410 (30%), Positives = 201/410 (49%), Gaps = 62/410 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL Y++P Q +++
Sbjct: 513 KLMCIVNYMEMA----RVTGVPLSCLLTRGQQIKVMSQLLRKSKVAGYLIPSYQSSGSEE 568
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ Y G V+EPK+G+Y K I +DF SLYPSI+ +N+C+TT+
Sbjct: 569 Q-----------------YEGATVIEPKRGYYAKPISTLDFASLYPSIMMAHNLCYTTLV 611
Query: 538 VRMLQDSDITTL--CEYLPEHQVDT------GILPSEIKKLVESRRQVKALMK---QPNL 586
++D T + P + V G+LP ++ L+ +R++ KA +K P
Sbjct: 612 QPNMKDKLNLTPDQLTHTPANNVFVKASVRKGLLPEILESLLAARKRAKADLKVETDPFK 671
Query: 587 SSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS----- 641
S L D RQ ALK++ANS+YG G + ++ VTA GR ++ TK
Sbjct: 672 RSVL----DGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEYTKQEVEQR 727
Query: 642 -LVENLNYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGV 695
VEN YE VIYGDTDS+M++ V + ++G + + K K ++L+ + V
Sbjct: 728 YTVEN-GYENDAVVIYGDTDSVMVNFGVETLERSMELGKEAADYVSAKFVKPIKLEFEKV 786
Query: 696 YKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
Y LL+ KK+YA L ++ KM C KG++ VRRD S L + + ++L E
Sbjct: 787 YYPYLLINKKRYAGLYFTRPDRYDKMDC----KGIETVRRDNSPLVANLMNNCLQKLLIE 842
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++ D ++ E+ K+ +DL + ++ L ITK+L+K+ K
Sbjct: 843 RN-PDGAI--------EYAKQTISDLLCNRIDISQLVITKELSKSDYAAK 883
>gi|324120754|dbj|BAJ78768.1| DNA polymerase delta catalytic subunit [Chrysoperla nipponensis]
Length = 1052
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/403 (28%), Positives = 193/403 (47%), Gaps = 54/403 (13%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
++I+ LN +++ V G ++ + G + LL Y++P
Sbjct: 468 LRILNHLNSFTNDMELARVSGVTINLLMTRGEQIKVVTQLLSQAQAAGYLMP-------- 519
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
KG+G + G V+EP +G+Y I +DFNSLYPSI+ +N+C+TT+
Sbjct: 520 --------VYKGQGTDDQ-FEGATVIEPVRGYYTDPIATLDFNSLYPSIMMAHNLCYTTL 570
Query: 537 --PVRM----LQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
P L + IT + + V G+LP ++ L+ +R++ K K+ +
Sbjct: 571 LHPSNKDKFGLTEDQITKTPSNHFFVKPTVRRGLLPYILENLLAARKKAK---KELEAET 627
Query: 589 DLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D + + + RQ ALKL+ANS+YG G N + ++ VTA GR ++ T+ VE
Sbjct: 628 DPVKKSVLNGRQLALKLSANSVYGFTGAQNGKLPCLEISGSVTAFGRTMIERTRQEVEEK 687
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVY 696
N +VIYGDTDS+M+ V D + ++G + + + K + L+ + VY
Sbjct: 688 YTMANGYEHNAQVIYGDTDSVMVKFGVKDLERCMELGREAAAYVSAKFINPIRLEFEKVY 747
Query: 697 KYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L +K KM C KG++ VRRD S L + + ++L ++
Sbjct: 748 YPYLLINKKRYAGLYYTKPDKYDKMDC----KGIETVRRDNSPLVANTINLCLQKLLIQK 803
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+ EH K++ +DL + ++ L I+K+LTK
Sbjct: 804 D---------PEGAIEHTKQVISDLLCNRIDISQLIISKELTK 837
>gi|354497678|ref|XP_003510946.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Cricetulus
griseus]
Length = 1070
Score = 131 bits (329), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 544 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 603
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++
Sbjct: 604 PTGDEFV-KSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVS 659
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE N N +V+YGDT
Sbjct: 660 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLENGYNANAKVVYGDT 719
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 720 DSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 779
Query: 715 L--SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
++ +M C KG++ VRRD L + + +IL +D H
Sbjct: 780 QPDTHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAH 826
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 827 AKDVISDLLCNRIDISQLVITKELTRA 853
>gi|358389733|gb|EHK27325.1| hypothetical protein TRIVIDRAFT_33534 [Trichoderma virens Gv29-8]
Length = 1105
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/329 (31%), Positives = 165/329 (50%), Gaps = 46/329 (13%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL-----C 550
Y G V+EP +G+YD I +DF SLYPSIIQ +N+C+TT +L+ D+
Sbjct: 578 YEGATVIEPTRGYYDVPIATLDFASLYPSIIQAHNLCYTT----LLRPGDVERFKLEKDV 633
Query: 551 EYLPEHQVDT--------GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKA 600
+Y+ D+ G+L +++L+ +R+Q K + Q +D + + RQ A
Sbjct: 634 DYIVTPNGDSFVTATKRKGLLAQILEELLSARKQAKRELAQ---ETDPFKKAVLNGRQLA 690
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVI 651
LK++ANS+YG G + +A+ T+ GR+++ TK VE + +VI
Sbjct: 691 LKISANSVYGLTGATTGKLPCLAIASSTTSFGRQMIEKTKREVEMKYNIANGYTHDAQVI 750
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQI-KSECNKLYKQLELDIDGVYKYMLLLKKKKYAAL 710
YGDTDS+M+ D K+G + K K K ++L+ + VY LL+ KK+YA L
Sbjct: 751 YGDTDSVMVKFGTKDLAEAMKLGEEASKFVSAKFLKPIKLEFEKVYFPYLLINKKRYAGL 810
Query: 711 SISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
+K KM + KG++ VRRD LA + V+ IL +D +Q
Sbjct: 811 YWTKTEKYDKM----DTKGLETVRRDNCLLAQTVIEKVLRMIL---------IDRDVQGA 857
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+++K DL + ++ L ITK LTK
Sbjct: 858 QDYVKSTIADLLQNKIDMSKLVITKALTK 886
>gi|240147853|gb|ACS45162.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 84/119 (70%), Gaps = 1/119 (0%)
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
E R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+K
Sbjct: 1 ERRKNVKKLMVDPRESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSK 59
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
GR+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 60 GRDILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKSLKELVNKQYKLLEI 118
>gi|407927598|gb|EKG20487.1| DNA-directed DNA polymerase family B pol2 [Macrophomina phaseolina
MS6]
Length = 1097
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/330 (30%), Positives = 167/330 (50%), Gaps = 36/330 (10%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRML-----QDSDI 546
Y G V+EP +G+YD I +DF SLYPS+IQ +N+C+TT+ V L +D +
Sbjct: 571 YEGATVIEPTRGYYDVPIATLDFASLYPSVIQAHNLCYTTLLNKNSVEKLGLKKDEDYIV 630
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLT 604
T + +V G+L ++L+ +R+Q K K+ L D + + RQ ALK++
Sbjct: 631 TPNGDLFCTTKVRKGLLTQIFEELLGARKQAK---KEMGLEQDPFKKAVLNGRQLALKIS 687
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G N + +A+ T+ GR+++ TK +VE + + +VIYGDT
Sbjct: 688 ANSVYGLTGATNGKLPCLAIASSTTSYGRQMIEKTKEVVEKHYTIANGYSHDAQVIYGDT 747
Query: 656 DSLMISCNVNDYDSVFKIGNQ-IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ V + D ++G + K + K ++L+ + VY LL+ KK+YA L
Sbjct: 748 DSVMVKFGVKELDKTMELGEEAAKFVSSHFTKPIKLEFEKVYFPYLLINKKRYAGL---Y 804
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
+N + KG++ VRRD +L Q + E S +D + + +K
Sbjct: 805 WTNPNKWDKMDTKGIETVRRDNCRLV---------QTVIETSLRMLLIDRDVNGAQDFVK 855
Query: 775 KIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+ +DL + ++ L ITK L K+ K
Sbjct: 856 ETISDLLQNKIDMSNLVITKALAKSDYAAK 885
>gi|149056044|gb|EDM07475.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform
CRA_b [Rattus norvegicus]
Length = 1099
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 166/326 (50%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDI-T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 577 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 636
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++A
Sbjct: 637 PTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVSA 693
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDTD
Sbjct: 694 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGYDANAKVVYGDTD 753
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 754 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSR 813
Query: 716 SNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
S+ +M C KG++ VRRD L + + +IL +D H
Sbjct: 814 SDAHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAHA 860
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 861 KDVISDLLCNRIDISQLVITKELTRA 886
>gi|320101467|ref|YP_004177059.1| replicative DNA polymerase I [Desulfurococcus mucosus DSM 2162]
gi|319753819|gb|ADV65577.1| replicative DNA polymerase I [Desulfurococcus mucosus DSM 2162]
Length = 799
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/386 (28%), Positives = 188/386 (48%), Gaps = 67/386 (17%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP A+Q+ N+ G L + R E+ L+ KE GE
Sbjct: 361 LPFAMQLANITGLPLDQVGAASVGHRLEWFLM-------------------KEATRRGEL 401
Query: 486 NKGKGRKKA-AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 544
+ K+A Y G +VL+P G ++ I ++DF S+YP+I+ +YNI TI L+
Sbjct: 402 IPNRVEKEAEPYKGAVVLQPLPGIHEN-IAVLDFTSMYPNIMIKYNIGPDTI----LRGG 456
Query: 545 DITTLCEYLPEHQVDT-----------GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ 593
+ ++ EH V G ++ L+ RRQ++A MK+ + S
Sbjct: 457 ECSS-----EEHNVAPEVGHCFLREPQGFFKGVLQALLALRRQLRAEMKKHPVDSPEYRL 511
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG 653
D RQ+A+K+ AN+ YG +G+ +R++ + A VTA GR + +++ +VIYG
Sbjct: 512 LDERQRAVKILANAAYGYMGWVGARWYCRECAEAVTAWGRRTISTVIEHAKSMGLKVIYG 571
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSI 712
DTDSL + N + V ++ + ++ E E+ +D VY+ + + KK+YA L
Sbjct: 572 DTDSLFVE---NIPEKVKELADFVEKEMG-----FEIKVDKVYRRVFFTEAKKRYAGL-- 621
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
L +G++ +I G + VR DW+++A E + V +L E++ ++ ++
Sbjct: 622 --LEDGRV----DIVGFEAVRGDWAEIAKEVQEKVTEILLSEKN---------IEKAIDY 666
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
++ I ++L+ G +PL L I K LTK
Sbjct: 667 VRSIVSELNQGRIPLEKLVIWKTLTK 692
>gi|307209597|gb|EFN86501.1| Transmembrane protein 147 [Harpegnathos saltator]
Length = 189
Score = 130 bits (328), Expect = 3e-27, Method: Composition-based stats.
Identities = 63/98 (64%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
Query: 1 MLILATFVPTTDNF-SGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT DN G +VFG+ +K SIDL D +G LVL+SIPGKG+ K+LT G+GW
Sbjct: 50 MLALATFFPTADNVGEEGFNVFGEFLKSSIDLADLIGFLLVLNSIPGKGYTKVLTVGIGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AGAE +LTRFL LWV AR EFDWKYIQ SL+S+I L+
Sbjct: 110 AGAEGLLTRFLLLWVDARDTEFDWKYIQKSLESSINLV 147
>gi|348559458|ref|XP_003465533.1| PREDICTED: DNA polymerase delta catalytic subunit-like [Cavia
porcellus]
Length = 1105
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/326 (31%), Positives = 167/326 (51%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDI---T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ ++ D+D T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLDADQFIRT 638
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++A
Sbjct: 639 PTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVSA 695
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE + + +V+YGDTD
Sbjct: 696 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVANGYSADAKVVYGDTD 755
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + S + + + L+ + VY LL+ KK+YA L S
Sbjct: 756 SVMCRFGVSSVAEAMDLGREAASWVSSHFPPPIRLEFEKVYFPYLLISKKRYAGLLFSSR 815
Query: 716 --SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
S+ +M C KG++ VRRD L + + ++L +D + H
Sbjct: 816 PDSHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPEGAVAHA 862
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K I +DL + ++ L ITK+LT+A
Sbjct: 863 KDIISDLLCNRIDISQLVITKELTRA 888
>gi|240147814|gb|ACS45143.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DIRQKALKLTANSMYGCLGF NSRF+A+PLA L+T KGR
Sbjct: 3 RKNVKKLMADPKESASY-ARVDIRQKALKLTANSMYGCLGFTNSRFYAKPLAVLITTKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
EIL +T L E + EVIYGDTDS+MI+ N ++ ++G +K + NK YK LE+
Sbjct: 62 EILQDTVDLAEKESMEVIYGDTDSIMINTNTSEMQKALEVGKILKEKVNKRYKLLEI 118
>gi|390939096|ref|YP_006402834.1| DNA polymerase Pol2 [Desulfurococcus fermentans DSM 16532]
gi|390192203|gb|AFL67259.1| DNA polymerase Pol2 [Desulfurococcus fermentans DSM 16532]
Length = 797
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 109/384 (28%), Positives = 189/384 (49%), Gaps = 57/384 (14%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP A+Q++++ G L + R E+ L+ + ++P++ +KE E
Sbjct: 361 LPFAMQLSSITGLPLDQVGAASVGNRLEWFLMREAFRRDELIPNRI----EKEAE----- 411
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
Y G +VL+P G ++ I ++DF S+YP+I+ +YNI TI +R
Sbjct: 412 ---------PYKGAVVLQPLPGIHEN-IAVLDFTSMYPNIMIKYNIGPDTI-IR----EG 456
Query: 546 ITTLCEYLPEHQV-------DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQ 598
I + E+ +V G ++ L+ R+Q++ MK+ S D RQ
Sbjct: 457 ICSESEHYVAPEVKHCFLREPPGFFKGVLQTLLSLRKQIRGEMKKYKTDSPEYRLLDERQ 516
Query: 599 KALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSL 658
KA+K+ AN+ YG +G+ +R++ + A VTA GR+ +L+ + +VIYGDTDSL
Sbjct: 517 KAIKVLANATYGYMGWVAARWYCKECAEAVTAWGRKTILSVIDYARVIGLKVIYGDTDSL 576
Query: 659 MISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSN 717
+ N D + ++ ++ E E+ ID VYK + + KK+YA L L +
Sbjct: 577 FVE---NIPDKITRLSEYVERELG-----FEIKIDKVYKRVFFTEAKKRYAGL----LED 624
Query: 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 777
G++ +I G + VR DW+++A E + V +L E++ ++ E+++
Sbjct: 625 GRV----DIVGFEAVRGDWAEIAKEVQEKVTEILLSEKN---------IEKAIEYVRNTI 671
Query: 778 TDLDNGFVPLTLLEITKQLTKAPE 801
+L+ G +PL L I K LTK+ E
Sbjct: 672 AELNQGRIPLEKLIIWKTLTKSIE 695
>gi|240147834|gb|ACS45153.1| POL1-like protein [Glomus etunicatum]
gi|240147844|gb|ACS45158.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM+ P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMEDPRESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKLLKELVNKQYKSLEI 118
>gi|240147830|gb|ACS45151.1| POL1-like protein [Glomus etunicatum]
gi|240147838|gb|ACS45155.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMADPKESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKLLKELVNKQYKSLEI 118
>gi|357464727|ref|XP_003602645.1| DNA polymerase [Medicago truncatula]
gi|355491693|gb|AES72896.1| DNA polymerase [Medicago truncatula]
Length = 550
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 112/340 (32%), Positives = 178/340 (52%), Gaps = 37/340 (10%)
Query: 501 VLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----VRM----LQDSDITTLCEY 552
VLE + GFY+K I +DF SLYPSI+ YN+C+ T+ RM L+ + T E
Sbjct: 215 VLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPENARMLNIPLESMNKTPSGET 274
Query: 553 LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYG 610
+ + GILP +++L+ +R++ KA +K+ + D L D RQ ALK++ANS+YG
Sbjct: 275 FVKSNLQKGILPEILEELLAARKRAKADLKE---AKDPLEKAVLDGRQLALKISANSVYG 331
Query: 611 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTDSLMIS 661
G + +++ VT+ GR+++ +TK LVE + N EVIYGDTDS+M+
Sbjct: 332 FTGASIGQLPCLEISSSVTSYGRQMIEHTKKLVEEKFTRLNGYDNNAEVIYGDTDSVMVQ 391
Query: 662 CNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISKL-SNGK 719
V+ +G + + + K ++L+ + VY LL+ KK+YA L +K S+ K
Sbjct: 392 FGVSTVKDAMDLGKEAAEHISGTFTKPIKLEFEKVYCPYLLISKKRYAGLFWTKEDSHDK 451
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
M + KG++ VRRD L + +IL E++ + +H+K +D
Sbjct: 452 M----DTKGIETVRRDNCLLVKNLVNDCLHKILIEKN---------IPAAVQHVKNAISD 498
Query: 780 LDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
L + L+LL ITK LTK + +V + L+ R R
Sbjct: 499 LLMNRMDLSLLVITKGLTKTGDDYEVKTAHVELAERMRKR 538
>gi|346327129|gb|EGX96725.1| DNA polymerase delta catalytic subunit [Cordyceps militaris CM01]
Length = 1108
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 105/333 (31%), Positives = 169/333 (50%), Gaps = 53/333 (15%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR--------MLQDSDIT 547
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT+ R +++D D
Sbjct: 578 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLITRKDRIAQFNLVKDED-- 635
Query: 548 TLCEYLPEHQVDT--------GILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDI 596
Y+ DT G+L +++L+ +R+Q K A+ P + L +
Sbjct: 636 ----YIVTPNGDTFVTTKQRKGLLAQILEELLSARKQAKRELAVETDPFKKAVL----NG 687
Query: 597 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLN 647
RQ ALK++ANS+YG G + +A+ T+ GR+++ TK VE + +
Sbjct: 688 RQLALKISANSVYGLTGATTGKLPCLAIASSTTSFGRQMIERTKDEVEKKYCIANGYSHD 747
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKYMLLLKKKK 706
+VIYGDTDS+M+ + K+G + + +K K ++L+ + VY LL+ KK+
Sbjct: 748 AQVIYGDTDSVMVKFGTKELAEAMKLGEEAAAFVSSKFVKPIKLEFEKVYFPYLLINKKR 807
Query: 707 YAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
YA L +K KM + KG++ VRRD LA + V+ IL ++
Sbjct: 808 YAGLYWTKTEKYDKM----DTKGLETVRRDNCLLAQTVIEKVLRMIL---------INRD 854
Query: 766 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+Q +++K + DL V ++ L ITK LTK
Sbjct: 855 VQGAQDYVKDMIADLLQNKVDMSKLVITKALTK 887
>gi|238883420|gb|EEQ47058.1| DNA polymerase delta catalytic subunit [Candida albicans WO-1]
Length = 849
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 161/300 (53%), Gaps = 34/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IPVRMLQDSDITTL 549
Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT I L + D T
Sbjct: 327 YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKT 386
Query: 550 C--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 605
+Y + GILP+ + +L+ +R++ KA +K+ D+L + RQ ALK++A
Sbjct: 387 PNGDYFVHSNLRKGILPTILDELLTARKKAKADLKKETDPFKKDVL---NGRQLALKISA 443
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + +++ VTA GRE++ TK+ V+ + +VIYGDTD
Sbjct: 444 NSVYGFTGATVGKLPCLAISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTD 503
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D ++ K+G + + + +K ++L+ + VY LL+ KK+YA L ++
Sbjct: 504 SVMVKFGYQDLETCMKLGEEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAGLYWTRP 563
Query: 716 SN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE------QSYTDYSLDDRLQN 768
KM + KG++ VRRD +L V+ IL+E Q + ++ D LQN
Sbjct: 564 EKFDKM----DTKGIETVRRDNCRLVQNVITKVLEFILEERDVPKAQRFVKQTIADLLQN 619
>gi|255549385|ref|XP_002515746.1| DNA polymerase delta catalytic subunit, putative [Ricinus communis]
gi|223545183|gb|EEF46693.1| DNA polymerase delta catalytic subunit, putative [Ricinus communis]
Length = 1049
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 121/410 (29%), Positives = 198/410 (48%), Gaps = 43/410 (10%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ V+P+ K+ G E G
Sbjct: 456 VEMARVTGVPMSFLLSRGQSIKVLSQLLRKAKQKNLVIPNV-----KQAGSEQG------ 504
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP----VRML---- 541
+Y G VLE GFY+K I +DF SLYPSI+ YN+C+ T+ VR L
Sbjct: 505 -----SYEGATVLEANAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPP 559
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQK 599
+ + T E + + GILP +++L+ +RR+ KA +K+ + D L D RQ
Sbjct: 560 ECVNKTPSGETFVKPNLQKGILPEILEELLAARRRAKADLKE---AKDPLEKAVLDGRQL 616
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEV 650
ALK++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N EV
Sbjct: 617 ALKVSANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTIMGGYEHNAEV 676
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAA 709
IYGDTDS+M+ V K+G + + + K ++L+ + VY LL+ KK+YA
Sbjct: 677 IYGDTDSVMVQFGVPTVPEAMKLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAG 736
Query: 710 LSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
L +N + KG + + ++ ++ E + +D +
Sbjct: 737 L---YWTNSDKFDKMDTKGEQSTFQPLTICXXXXNCLLVKNLVTECLH-KILIDRDVPGA 792
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+++K +DL + L+LL ITK LTK + +V + L+ R R
Sbjct: 793 VQYVKNTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKR 842
>gi|330834000|ref|YP_004408728.1| DNA polymerase II [Metallosphaera cuprina Ar-4]
gi|329566139|gb|AEB94244.1| DNA polymerase II [Metallosphaera cuprina Ar-4]
Length = 776
Score = 130 bits (328), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 174/325 (53%), Gaps = 42/325 (12%)
Query: 431 QITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKG 490
Q+T + G L + M R E+LL+ + + ++P N+ E
Sbjct: 355 QLTVISGLPLDQLCMASVGYRIEWLLMRESKKFNELIP------NRVE------------ 396
Query: 491 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLC 550
RK +Y GGLV+EPK G ++ + ++DF+S+YPSI+ +YNI T+ D I
Sbjct: 397 RKNESYKGGLVIEPKPGLHEN-VAVLDFSSMYPSIMIKYNIGPDTLVQGECNDCWIAPEV 455
Query: 551 EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG 610
Y V+ G S + L+E RR+VK+ + N + + D RQKALK+ AN+MYG
Sbjct: 456 GYKFRRDVN-GFYRSILVSLLEERRKVKSELANVNDEYER-RRLDERQKALKVMANAMYG 513
Query: 611 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSV 670
+G+ ++R++++ A VTA GRE+++ ++ + +EV+YGDTDS+ + N++D D++
Sbjct: 514 YMGWSSARWYSKEGAESVTAWGRELIIRASNIAKEAGFEVVYGDTDSIFVKGNMSDVDNL 573
Query: 671 FKIGNQIKSECNKLYKQLELDIDGVYKYMLLL---KKKKYAALSISKLSNGKMICSQEIK 727
+++ K+L+L+I KY + KK+YA L+ +GK+ +I
Sbjct: 574 ----------VSRITKELDLEIKIDKKYKKIFFTENKKRYAGLT----YDGKI----DIV 615
Query: 728 GVDVVRRDWSQLASEAGKFVISQIL 752
G + +R DW +A E + VI +IL
Sbjct: 616 GFEAIRGDWCDIAKETQRVVIEKIL 640
>gi|77022890|ref|XP_888889.1| hypothetical protein CaO19_5182 [Candida albicans SC5314]
gi|76573702|dbj|BAE44786.1| hypothetical protein [Candida albicans]
Length = 1038
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 161/300 (53%), Gaps = 34/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IPVRMLQDSDITTL 549
Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT I L + D T
Sbjct: 516 YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKT 575
Query: 550 C--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 605
+Y + GILP+ + +L+ +R++ KA +K+ D+L + RQ ALK++A
Sbjct: 576 PNGDYFVHSNLRKGILPTILDELLTARKKAKADLKKETDPFKKDVL---NGRQLALKISA 632
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + +++ VTA GRE++ TK+ V+ + +VIYGDTD
Sbjct: 633 NSVYGFTGATVGKLPCLAISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTD 692
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D ++ K+G + + + +K ++L+ + VY LL+ KK+YA L ++
Sbjct: 693 SVMVKFGYQDLETCMKLGEEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAGLYWTRP 752
Query: 716 SN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE------QSYTDYSLDDRLQN 768
KM + KG++ VRRD +L V+ IL+E Q + ++ D LQN
Sbjct: 753 EKFDKM----DTKGIETVRRDNCRLVQNVITKVLEFILEERDVPKAQRFVKQTIADLLQN 808
>gi|240147822|gb|ACS45147.1| POL1-like protein [Glomus etunicatum]
gi|240147842|gb|ACS45157.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMADPRESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKLLKELVNKQYKSLEI 118
>gi|13124716|sp|P46588.2|DPOD_CANAL RecName: Full=DNA polymerase delta catalytic subunit; AltName:
Full=DNA polymerase III
gi|3850149|emb|CAA21949.1| DNA polymerase delta [Candida albicans]
Length = 1038
Score = 130 bits (327), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 161/300 (53%), Gaps = 34/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IPVRMLQDSDITTL 549
Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT I L + D T
Sbjct: 516 YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKT 575
Query: 550 C--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 605
+Y + GILP+ + +L+ +R++ KA +K+ D+L + RQ ALK++A
Sbjct: 576 PNGDYFVHSNLRKGILPTILDELLTARKKAKADLKKETDPFKKDVL---NGRQLALKISA 632
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + +++ VTA GRE++ TK+ V+ + +VIYGDTD
Sbjct: 633 NSVYGFTGATVGKLPCLAISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTD 692
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D ++ K+G + + + +K ++L+ + VY LL+ KK+YA L ++
Sbjct: 693 SVMVKFGYQDLETCMKLGEEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAGLYWTRP 752
Query: 716 SN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE------QSYTDYSLDDRLQN 768
KM + KG++ VRRD +L V+ IL+E Q + ++ D LQN
Sbjct: 753 EKFDKM----DTKGIETVRRDNCRLVQNVITKVLEFILEERDVPKAQRFVKQTIADLLQN 808
>gi|241957481|ref|XP_002421460.1| DNA polymerase III, putative; DNA polymerase delta catalytic
subunit, putative [Candida dubliniensis CD36]
gi|223644804|emb|CAX40796.1| DNA polymerase III, putative [Candida dubliniensis CD36]
Length = 1040
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 162/300 (54%), Gaps = 34/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IPVRMLQDSDITTL 549
Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT I L + D T
Sbjct: 518 YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKT 577
Query: 550 C--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 605
+Y ++ GILP+ + +L+ +R++ KA +K+ D+L + RQ ALK++A
Sbjct: 578 PNGDYFVNSKLRKGILPTILDELLTARKKAKADLKKETDPFKKDVL---NGRQLALKISA 634
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + +++ VTA GRE++ TK+ V+ + +VIYGDTD
Sbjct: 635 NSVYGFTGATVGKLPCLAISSSVTAFGREMIEKTKNEVQEYYSRKNGHPYDAKVIYGDTD 694
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D ++ K+G + + + +K ++L+ + VY LL+ KK+YA L ++
Sbjct: 695 SVMVKFGYQDLETCMKLGEEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAGLYWTRP 754
Query: 716 SN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE------QSYTDYSLDDRLQN 768
KM + KG++ VRRD +L V+ IL+E Q + ++ D LQN
Sbjct: 755 EKFDKM----DTKGIETVRRDNCRLVQNVITKVLEFILEERDVPKAQRFVKQTIADLLQN 810
>gi|240147826|gb|ACS45149.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMTDPRESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKLLKELVNKQYKSLEI 118
>gi|119719310|ref|YP_919805.1| DNA polymerase II [Thermofilum pendens Hrk 5]
gi|119524430|gb|ABL77802.1| replicative DNA polymerase I [Thermofilum pendens Hrk 5]
Length = 794
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 110/380 (28%), Positives = 192/380 (50%), Gaps = 52/380 (13%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
VLP IQ++++ G L + R E+ L+ + ++P+ +++ GEET
Sbjct: 362 VLPFGIQLSSLVGLPLDQVFAASVGNRVEWFLIRQAFVFNELVPN-----SRERGEET-- 414
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQ 542
Y G +VL+PK G + K I ++DF+S+YP+I+ +YNI T P +
Sbjct: 415 -----------YKGAIVLKPKPGVHKK-IAVLDFSSMYPNIMIKYNISPDTYVPPEEHVD 462
Query: 543 DSDITTLCEYLPEHQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599
S++ E H+ G ++ L+E+RR+++ MK + S+ YD RQK
Sbjct: 463 PSEVWVAPEV--GHRFRKHPPGFYRKVLESLLEARRRLREKMKTLDPRSEEYRIYDERQK 520
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
A+K+ N+ YG G+ +R++ + +A TA GRE++ T ++L +IYGDTDS+
Sbjct: 521 AIKVITNATYGYSGWSMARWYKREVAEATTAWGRELIKATIKKAQSLGLSIIYGDTDSIF 580
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVY-KYMLLLKKKKYAALSISKLSNG 718
+ + KIG ++ +L E+ +D VY K KKKY L L++G
Sbjct: 581 VQFDEE------KIGRLVEYVEKEL--GFEIKLDKVYEKVFFTESKKKYCGL----LADG 628
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
++ ++ G + VR DW++++ E + V+ +L E+ D + + + ++K T
Sbjct: 629 RV----DLVGFEAVRGDWAEISKEIQERVVEIVLKEE--------DPWKAV-DFVRKTIT 675
Query: 779 DLDNGFVPLTLLEITKQLTK 798
+L G +PL L I K L+K
Sbjct: 676 ELSEGRIPLEKLVIWKTLSK 695
>gi|452823008|gb|EME30022.1| DNA polymerase delta subunit 1 [Galdieria sulphuraria]
Length = 1070
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 189/363 (52%), Gaps = 52/363 (14%)
Query: 456 LLH--AFHEKSYVLPD-KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKF 512
LLH AF E S ++PD K N E E+ Y G V+EPK+GFY
Sbjct: 523 LLHRKAFPE-SLLIPDLKNTSHNSSEEAES-------------YEGATVIEPKRGFYKMP 568
Query: 513 IILMDFNSLYPSIIQEYNICFTTIP----VRMLQDSDI----TTLCEYLPEHQVDTGILP 564
I +DF SLYPSI+ +NIC++T+ V+ L+ D + C P V G+L
Sbjct: 569 IATLDFASLYPSIMMAHNICYSTLVRKDRVKYLKPEDYIKSPSGDCYVRP--SVKKGVLS 626
Query: 565 SEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFA 621
++ L+ +R+ K ++Q P L S L + RQ ALK++AN++YG G +
Sbjct: 627 KILEDLLSARKVAKRELEQATDPFLRSVL----NGRQLALKISANAVYGFTGASRGKLPC 682
Query: 622 QPLAALVTAKGREILLNTKSLVEN--LNYEVIYGDTDSLMISCNVN-DYDSVFKIGNQIK 678
++A +TA GR ++ TKSLVE+ + VIYGDTDS+M+ + + +G Q
Sbjct: 683 TEISASITAFGRRMIETTKSLVESKFPSSVVIYGDTDSVMVKFRDDLTLEESMSLGQQAA 742
Query: 679 SECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDW 736
++ + K ++L+ + Y LL++KK+YA L +K + KM C KG++ VRRD
Sbjct: 743 DIISQSFPKPIKLEFEKCYYPYLLIQKKRYAGLLWTKTETYDKMDC----KGIETVRRDN 798
Query: 737 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
+L + V+ ++L E+ +Q + +KK +DL V ++LL I+K+L
Sbjct: 799 CKLVANVVSKVLEKLLVERD---------VQGAIDFVKKTISDLLQNKVDISLLVISKEL 849
Query: 797 TKA 799
+KA
Sbjct: 850 SKA 852
>gi|218884606|ref|YP_002428988.1| DNA polymerase II [Desulfurococcus kamchatkensis 1221n]
gi|218766222|gb|ACL11621.1| DNA polymerase [Desulfurococcus kamchatkensis 1221n]
Length = 797
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 111/383 (28%), Positives = 192/383 (50%), Gaps = 55/383 (14%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP A+Q++++ G L + R E+ L+ + ++P++ +KE E
Sbjct: 361 LPFAMQLSSITGLPLDQVGAASVGNRLEWFLMREAFRRDELIPNRI----EKEVE----- 411
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR--MLQD 543
Y G +VL+P G ++ I ++DF S+YP+I+ +YNI TI +R + ++
Sbjct: 412 ---------PYKGAVVLQPLPGIHEN-IAVLDFTSMYPNIMIKYNIGPDTI-IREGVCRE 460
Query: 544 SDITTLCE----YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599
S+ E +L E G ++ L+ R+Q++ MK+ S D RQK
Sbjct: 461 SEHYVAPEVKHCFLRE---PPGFFKGVLQILLSLRKQIRGEMKKYKTDSPEYRLLDERQK 517
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
A+K+ AN+ YG +G+ +R++ + A VTA GR +L+ + +VIYGDTDSL
Sbjct: 518 AIKVLANATYGYMGWVAARWYCKECAEAVTAWGRRTILSVIDYARVIGLKVIYGDTDSLF 577
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNG 718
+ N D + ++ ++ E E+ ID VYK + + KK+YA L L +G
Sbjct: 578 VE---NIPDKITRLSEYVERELG-----FEIKIDKVYKRVFFTEAKKRYAGL----LEDG 625
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
++ +I G + VR DW+++A E + V +L E++ ++ E+++ I
Sbjct: 626 RV----DIVGFEAVRGDWAEIAKEVQEKVTEILLSEKN---------IEKAIEYVRNIIA 672
Query: 779 DLDNGFVPLTLLEITKQLTKAPE 801
+L+ G +PL L I K LTK+ E
Sbjct: 673 ELNQGRIPLEKLIIWKTLTKSVE 695
>gi|240147836|gb|ACS45154.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ Q DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMADPRESASY-AQVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL +T L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQDTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKILKELVNKRYKSLEI 118
>gi|358401350|gb|EHK50656.1| hypothetical protein TRIATDRAFT_53190 [Trichoderma atroviride IMI
206040]
Length = 1103
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 107/327 (32%), Positives = 169/327 (51%), Gaps = 38/327 (11%)
Query: 494 AAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSD- 545
A Y G V+EP +G+YD I +DF SLYPSIIQ +N+C+TT+ P ++ +D D
Sbjct: 574 AQYEGATVIEPTRGYYDVPIATLDFASLYPSIIQAHNLCYTTLLRPGDAERFKLEKDVDY 633
Query: 546 -ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALK 602
IT + G+L +++L+ +R+Q K + Q +D + + RQ ALK
Sbjct: 634 IITPNGDQFVTAAKRKGLLAQILEELLSARKQAKRELAQ---ETDPFKKAVLNGRQLALK 690
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---NL------NYEVIYG 653
++ANS+YG G + +A+ T+ GR+++ TK VE N+ + +VIYG
Sbjct: 691 VSANSVYGLTGATTGKLPCLAIASSTTSFGRQMIEKTKREVEERYNIANGYAHDAQVIYG 750
Query: 654 DTDSLMISCNVNDYDSVFKIGNQI-KSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSI 712
DTDS+M+ D K+G + K +K K ++L+ + VY LL+ KK+YA L
Sbjct: 751 DTDSVMVKFGTKDLAEAMKLGEEASKFVSDKFLKPIKLEFEKVYFPYLLINKKRYAGLYW 810
Query: 713 SKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
++ KM + KG++ VRRD LA + V+ IL +D +Q +
Sbjct: 811 TRTEKYDKM----DTKGLETVRRDNCLLAQTVIEKVLRMIL---------IDRDVQGAQD 857
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTK 798
++K DL + ++ L ITK LTK
Sbjct: 858 YVKNTIADLLQNKIDMSKLVITKALTK 884
>gi|83282608|ref|XP_729844.1| DNA polymerase delta catalytic subunit [Plasmodium yoelii yoelii
17XNL]
gi|23488820|gb|EAA21409.1| DNA polymerase delta catalytic subunit [Plasmodium yoelii yoelii]
Length = 1097
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 106/330 (32%), Positives = 172/330 (52%), Gaps = 45/330 (13%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTLC 550
+ G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ + L +DITT
Sbjct: 580 FEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKNNDEISDLNKNDITT-- 637
Query: 551 EYLP--------EHQVDTGILPSEIKKLVESRRQVKALMK-QPNLSSDLLMQYDIRQKAL 601
+P + V G+LP +++L+ +R+ VKA+MK + N + +++ + RQ AL
Sbjct: 638 --VPGKNNFKFVKGNVKRGVLPLIVEELIRARKNVKAMMKNEQNPITKMVL--NGRQLAL 693
Query: 602 KLTANSMYGCLG-FPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVI 651
K++ANS+YG G + +A +T GR ++ TK VE N V+
Sbjct: 694 KISANSVYGYTGAAAGGQLPCLEIATSITTFGRSMIEKTKETVEAYYCKNNGFEHNATVV 753
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNK-LYKQLELDIDGVYKYMLLLKKKKYAAL 710
YGDTDS+M+ ND ++G +K ++L+ + VY LLL KK+YA L
Sbjct: 754 YGDTDSVMVKFGTNDVGEAMRLGKDAAERISKEFLHPIKLEFEKVYCPYLLLNKKRYAGL 813
Query: 711 SISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
+ + + KM C KG++ VRRD+ L + + V++++L E+ L +
Sbjct: 814 LYTNPNKHDKMDC----KGIETVRRDFCILIQQMMETVLNKLLIEKD---------LNSA 860
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
E+ K DL + ++LL +TK L KA
Sbjct: 861 IEYTKSKIKDLLTNNIDMSLLVVTKSLGKA 890
>gi|336472726|gb|EGO60886.1| hypothetical protein NEUTE1DRAFT_120002 [Neurospora tetrasperma
FGSC 2508]
gi|350294031|gb|EGZ75116.1| DNA polymerase delta catalytic subunit [Neurospora tetrasperma FGSC
2509]
Length = 1104
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 167/327 (51%), Gaps = 42/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDITTLCEYLP 554
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT I R ++ D+ +Y+
Sbjct: 577 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKRDIERWDLKKDEDYIV 636
Query: 555 EHQVDT--------GILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
D G+L +++L+ +R+Q K A+ K P + L + RQ ALK+
Sbjct: 637 TPNGDMFVTTKQRKGLLAQILEELLSARKQAKRELAVEKDPFKKAVL----NGRQLALKV 692
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G N + +A+ VT+ GR+++ TK VE + + +VIYGD
Sbjct: 693 SANSVYGLTGATNGKLPCLEIASSVTSFGRQMIERTKKEVEERYTIANGYSHDAQVIYGD 752
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSE--CNKLYKQLELDIDGVYKYMLLLKKKKYAALSI 712
TDS+M+ D K+G Q SE K K ++L+ + VY LL+ KK+YA L
Sbjct: 753 TDSVMVKFGTKDLAEAMKLG-QDASEYVSGKFVKPIKLEFEKVYFPYLLINKKRYAGLYW 811
Query: 713 SKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+K KM + KG++ VRRD L + V+ IL +D +
Sbjct: 812 TKPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVPGAQA 858
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTK 798
++K DL + ++ L ITK LTK
Sbjct: 859 YVKDTIADLLQNKIDMSKLVITKALTK 885
>gi|68525479|gb|AAY98790.1| family B-type DNA polymerase [Staphylothermus marinus]
Length = 801
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 189/379 (49%), Gaps = 53/379 (13%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP A+Q++N+ G L + R E+ L+ ++P N+ E
Sbjct: 364 LPFAMQLSNITGLPLDQVGAASVGFRLEWYLMREAFRYGELVP------NRVE------- 410
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R +Y G +VL+P KG ++ I ++DF+S+YP+I+ +YN+ TI + D
Sbjct: 411 -----RAAESYRGAVVLKPVKGVHEN-IAVLDFSSMYPNIMIKYNVGPDTIVRNEKCNPD 464
Query: 546 ITTLCEYLPE-----HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
+ PE + G ++ L+ R+Q+K+ MK+ +S D RQKA
Sbjct: 465 KHNIA---PEVGHCFRKEPPGFFKRVLETLLRLRKQIKSEMKKYPPTSYEYRLLDERQKA 521
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
+K+ AN+ YG +G+ ++R++ + A VTA GR+ + + L L +VIYGDTDSL +
Sbjct: 522 VKVLANATYGYMGWIHARWYCRECAEAVTAWGRQTIKSAIELARKLGLKVIYGDTDSLFV 581
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNGK 719
+ D D V K+ I+++ E+ ID +YK + + KK+YA L L +G+
Sbjct: 582 TY---DKDKVEKLIELIQTKLG-----FEIKIDKIYKRVFFTEAKKRYAGL----LEDGR 629
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
+ +I G + VR DW+++A E + V +L E S + E+++++ D
Sbjct: 630 I----DIVGFEAVRGDWAEIAKEVQEKVTEILLKENS---------IDKAIEYVRQVIAD 676
Query: 780 LDNGFVPLTLLEITKQLTK 798
L G +PL L I K L+K
Sbjct: 677 LKAGKIPLDKLIIWKTLSK 695
>gi|118431730|ref|NP_148383.2| DNA polymerase II [Aeropyrum pernix K1]
gi|152031597|sp|O93746.3|DPOL2_AERPE RecName: Full=DNA polymerase 2; AltName: Full=DNA polymerase II
gi|116063052|dbj|BAA81109.2| family B DNA polymerase II [Aeropyrum pernix K1]
Length = 803
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 192/381 (50%), Gaps = 52/381 (13%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP +++ V G L + + R E+ L+ + ++P++
Sbjct: 369 LPFGAELSQVSGLPLDQVMAASVGFRLEWRLIREAAKLGELVPNR--------------V 414
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQD 543
+ +GR Y+G +VL PK G ++ I ++DF S+YP+I+ +YN+ T+ P +
Sbjct: 415 ERSEGR----YAGAIVLRPKPGVHED-IAVLDFASMYPNIMVKYNVGPDTLVRPGEEYGE 469
Query: 544 SDITTLCEYLPEHQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
++ T E H+ G +++ + RRQ+++ MK+ S D RQKA
Sbjct: 470 EEVYTAPEV--GHKFRKSPPGFFKKILERFLSWRRQIRSEMKKHPPDSPEYKLLDERQKA 527
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
+KL AN+ YG +G+P++R++ + A VTA GR I+ L EVIYGDTDSL +
Sbjct: 528 IKLLANASYGYMGWPHARWYCRECAEAVTAWGRSIIRTAIRKAGELGLEVIYGDTDSLFV 587
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNGK 719
ND + V ++ ++ E ++ +D VY+ + + KK+Y L++ +GK
Sbjct: 588 K---NDPEKVERLIRFVEEELG-----FDIKVDKVYRRVFFTEAKKRYVGLTV----DGK 635
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
+ ++ G + VR DWS+LA E +F +++I+ + D ++ D ++NI E +++ + D
Sbjct: 636 I----DVVGFEAVRGDWSELAKET-QFKVAEIVLKTGSVDEAV-DYVRNIIEKLRRGQVD 689
Query: 780 LDNGFVPLTLLEITKQLTKAP 800
+ L I K LT+ P
Sbjct: 690 MRK-------LVIWKTLTRPP 703
>gi|85103616|ref|XP_961558.1| DNA polymerase delta catalytic subunit [Neurospora crassa OR74A]
gi|18376276|emb|CAD21389.1| probable DNA-directed DNA polymerase III [Neurospora crassa]
gi|28923105|gb|EAA32322.1| DNA polymerase delta catalytic subunit [Neurospora crassa OR74A]
Length = 1104
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 109/327 (33%), Positives = 167/327 (51%), Gaps = 42/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDITTLCEYLP 554
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT I R ++ D+ +Y+
Sbjct: 577 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKRDIERWDLKKDEDYIV 636
Query: 555 EHQVDT--------GILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
D G+L +++L+ +R+Q K A+ K P + L + RQ ALK+
Sbjct: 637 TPNGDMFVTTKQRKGLLAQILEELLSARKQAKRELAVEKDPFKKAVL----NGRQLALKV 692
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G N + +A+ VT+ GR+++ TK VE + + +VIYGD
Sbjct: 693 SANSVYGLTGATNGKLPCLEIASSVTSFGRQMIERTKKEVEERYTIANGYSHDAQVIYGD 752
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSE--CNKLYKQLELDIDGVYKYMLLLKKKKYAALSI 712
TDS+M+ D K+G Q SE K K ++L+ + VY LL+ KK+YA L
Sbjct: 753 TDSVMVKFGTKDLAEAMKLG-QDASEYVSGKFIKPIKLEFEKVYFPYLLINKKRYAGLYW 811
Query: 713 SKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+K KM + KG++ VRRD L + V+ IL +D +
Sbjct: 812 TKPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVPGAQA 858
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTK 798
++K DL + ++ L ITK LTK
Sbjct: 859 YVKDTIADLLQNKIDMSKLVITKALTK 885
>gi|20094475|ref|NP_614322.1| B family DNA polymerase [Methanopyrus kandleri AV19]
gi|19887571|gb|AAM02252.1| B family DNA polymerase [Methanopyrus kandleri AV19]
Length = 830
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 181/344 (52%), Gaps = 36/344 (10%)
Query: 489 KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQD 543
K R++ AY G +V EP+ G ++ ++ +DF SLYP+++ +NI T P +++
Sbjct: 424 KRRRRKAYKGAIVFEPEIGLHEN-VVCVDFASLYPNVMVAHNISPDTFDCDCCPRVTVEE 482
Query: 544 SDITTLCEYLPE--HQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDI 596
D T P+ H+ G P ++ L+E RR++K +++ + S D+
Sbjct: 483 VDDPTDATVAPDVGHKFCKRRKGFFPRLVEGLIERRRELKRRLRKLDTESHPHEAKILDV 542
Query: 597 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDT 655
RQ+A K+ ANS YG +G+ N+R+F + A VTA GR + + + E +V+YGDT
Sbjct: 543 RQQAYKVLANSYYGYMGWANARWFCRECAESVTAWGRYYISEVRRIAEEKYGLKVVYGDT 602
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKL 715
DSL + D + + + E N +EL+++ YK +L + KKKYA +
Sbjct: 603 DSLFVKLPDADLEETIERVKEFLKEVNGRLP-VELELEDAYKRILFVTKKKYAGYT---- 657
Query: 716 SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKK 775
+GK++ KG++VVRRDW+ +A E + V+ +IL D + L+ IHE +++
Sbjct: 658 EDGKIVT----KGLEVVRRDWAPIARETQRRVLKRIL-----ADNDPEAALKEIHEVLER 708
Query: 776 IRTDLDNGFVPLTLLEITKQLTKAP----EGGKVCITQIRLSRN 815
+++ G V + L +T QLTK P + G +RL+R+
Sbjct: 709 LKS----GDVDIDELAVTSQLTKKPSEYVQKGPHVRAALRLARH 748
>gi|67900676|ref|XP_680594.1| hypothetical protein AN7325.2 [Aspergillus nidulans FGSC A4]
gi|40742186|gb|EAA61376.1| hypothetical protein AN7325.2 [Aspergillus nidulans FGSC A4]
gi|259483322|tpe|CBF78614.1| TPA: catalytic subunit of DNA polymerase delta (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 1044
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 119/402 (29%), Positives = 197/402 (49%), Gaps = 60/402 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +FL L ++ V+P N
Sbjct: 520 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFLSQLYRKALQQQLVIP------N 567
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K +E Y G V+EP + +YD I +DF SLYPSIIQ +N+C+TT
Sbjct: 568 MKSTDEQD------------YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTT 615
Query: 536 I-----PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ M +D D +T + +V G+L +++L+ +R++ K + Q +
Sbjct: 616 LLNKNSVAGMKKDEDYIVTPNGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQ---ET 672
Query: 589 DLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D + + RQ ALK++ANS+YG G + +A+ T+ GR+++ TK VE
Sbjct: 673 DPFKKAVLNGRQLALKVSANSVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVEAR 732
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVY 696
+ + +VIYGDTDS+M+ V + + K+G + +K K ++L+ + VY
Sbjct: 733 YTIANGYSHDAKVIYGDTDSVMVKFGVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVY 792
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +N K + KG++ VRRD L + V+ +IL
Sbjct: 793 FPYLLINKKRYAGLY---WTNPKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKIL---- 845
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+D ++ E++K +DL + ++ L ITK LTK
Sbjct: 846 -----IDRDVEAAQEYVKDTISDLLQNKIDMSKLVITKALTK 882
>gi|149056046|gb|EDM07477.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform
CRA_d [Rattus norvegicus]
gi|149056047|gb|EDM07478.1| polymerase (DNA directed), delta 1, catalytic subunit, isoform
CRA_d [Rattus norvegicus]
Length = 964
Score = 130 bits (327), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 577 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 636
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++
Sbjct: 637 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVS 692
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE + N +V+YGDT
Sbjct: 693 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGYDANAKVVYGDT 752
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 753 DSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 812
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
S+ +M C KG++ VRRD L + + +IL +D H
Sbjct: 813 RSDAHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAH 859
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 860 AKDVISDLLCNRIDISQLVITKELTRA 886
>gi|240147866|gb|ACS45168.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 130 bits (326), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMVDPKESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKLLKELVNKQYKSLEI 118
>gi|340959854|gb|EGS21035.1| DNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1108
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 164/325 (50%), Gaps = 38/325 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---------PVRMLQDSDI 546
Y G V+EP +G+YD I +DF SLYPSII +N+C+TT+ ++ +D +
Sbjct: 581 YEGATVIEPVRGYYDVPIATLDFASLYPSIIMAHNLCYTTLIKKKDVEKWNLKKDEDYIV 640
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLT 604
T + + G+L +++L+ +R+Q K K+ +D + + RQ ALK++
Sbjct: 641 TPNGDMFVTTKQRKGLLAQILEELLAARKQAK---KELAAETDPFKKAVLNGRQLALKIS 697
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G N + +A+ TA GR++++ TK VE + + +VIYGDT
Sbjct: 698 ANSVYGLTGATNGKLPCLEIASSTTAFGRQMIMKTKEEVEKRYCIANGYSHDAQVIYGDT 757
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSE--CNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
DS+M+ D K+G Q SE +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 758 DSVMVKFGTRDLKEAMKLG-QDASEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT 816
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ + + KG++ VRRD L V+ IL +D + E++
Sbjct: 817 RPEKFDKV---DTKGIETVRRDNCLLVQTVIDKVLRMIL---------IDQDVPGAQEYV 864
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTK 798
K DL + ++ L ITK LTK
Sbjct: 865 KSTIADLLQNKIDMSKLVITKALTK 889
>gi|126465787|ref|YP_001040896.1| DNA polymerase II [Staphylothermus marinus F1]
gi|126014610|gb|ABN69988.1| replicative DNA polymerase I [Staphylothermus marinus F1]
Length = 801
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 189/379 (49%), Gaps = 53/379 (13%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP A+Q++N+ G L + R E+ L+ ++P N+ E
Sbjct: 364 LPFAMQLSNITGLPLDQVGAASVGFRLEWYLMREAFRYGELVP------NRVE------- 410
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R +Y G +VL+P KG ++ I ++DF+S+YP+I+ +YN+ TI + D
Sbjct: 411 -----RAAESYRGAVVLKPVKGVHEN-IAVLDFSSMYPNIMIKYNVGPDTIVRNEKCNPD 464
Query: 546 ITTLCEYLPE-----HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
+ PE + G ++ L+ R+Q+K+ MK+ +S D RQKA
Sbjct: 465 KHNIA---PEVGHCFRKEPPGFFKRVLETLLRLRKQIKSEMKKYPPTSYEYRLLDERQKA 521
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
+K+ AN+ YG +G+ ++R++ + A VTA GR+ + + L L +VIYGDTDSL +
Sbjct: 522 VKVLANATYGYMGWIHARWYCRECAEAVTAWGRQTIKSAIELARKLGLKVIYGDTDSLFV 581
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNGK 719
+ D D V K+ I+++ E+ ID +YK + + KK+YA L L +G+
Sbjct: 582 TY---DKDKVEKLIELIQTKLG-----FEIKIDKIYKRVFFTEAKKRYAGL----LEDGR 629
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
+ +I G + VR DW+++A E + V +L E S + E+++++ D
Sbjct: 630 I----DIVGFEAVRGDWAEIAKEVQEKVTEILLKENS---------IDKAIEYVRQVIAD 676
Query: 780 LDNGFVPLTLLEITKQLTK 798
L G +PL L I K L+K
Sbjct: 677 LKAGKIPLDKLIIWKTLSK 695
>gi|324120736|dbj|BAJ78759.1| DNA polymerase delta catalytic subunit [Cryptotympana facialis]
Length = 1102
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 119/408 (29%), Positives = 197/408 (48%), Gaps = 58/408 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +++ V G L L G+ + LL EK+YV+P
Sbjct: 525 KLMCIINYM----EMSRVTGVSLLSLLTRGQQIKVVSQLLRKAKEKNYVMP--------- 571
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
G G ++ Y G V+EP KG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 572 --------TYGVGSQEDQYEGATVIEPIKGYYKVPIATLDFSSLYPSIMIAHNLCYTTLL 623
Query: 538 -------VRMLQDSDITTLCEY-LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ + D T Y + + G+LP ++ L+ +R++ K +K +D
Sbjct: 624 QGNARERLALTPDQFSRTPANYFFVKSSLRKGLLPEILEDLLNARKRAKLDLKN---ETD 680
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE--- 644
+ D RQ ALK++ANS+YG G + +++ VT+ GR ++ TK VE
Sbjct: 681 PFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTSYGRTMIEQTKQEVEQHY 740
Query: 645 ------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYK 697
+ V+YGDTDS+M+ V + ++G + K K ++L+ + VY
Sbjct: 741 CIANGYQHDAVVVYGDTDSVMVKFGVTTLEEAMELGREAAEVVTTKFIKPIKLEFEKVYF 800
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L ++ KM C KG++ VRRD S L + + ++L EQ
Sbjct: 801 PYLLISKKRYAGLYFTRPDKYDKMDC----KGLETVRRDNSPLVANMMNTCLQKLLIEQ- 855
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+ DD + E+ K++ +DL + ++ L ITK+L K+ K
Sbjct: 856 ----NPDDAV----EYAKEVISDLLCNRIDISQLVITKELAKSDYAAK 895
>gi|396485292|ref|XP_003842135.1| similar to catalytic subunit DNA polymerase delta [Leptosphaeria
maculans JN3]
gi|312218711|emb|CBX98656.1| similar to catalytic subunit DNA polymerase delta [Leptosphaeria
maculans JN3]
Length = 1115
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 116/403 (28%), Positives = 196/403 (48%), Gaps = 58/403 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+ R L + ++PD
Sbjct: 524 KLMCLVNYTEMA-RVTGVPFNYL---LARGQQVRFISQLFRKALDHQLIVPDL-----PN 574
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
+G+ T + Y G V+EPK+G+Y + + +DF SLYPSI+Q +N+C+TT
Sbjct: 575 QGDSTDQ-----------YEGATVIEPKRGYYKQPVATLDFASLYPSIMQAHNLCYTTWL 623
Query: 537 ------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPN 585
++M +D D +T + + G+L +++L+ +R++ K A+ P
Sbjct: 624 DKQTVEKLKMKKDEDYIVTPNGDMFCTAKTRKGLLTQILEELLGARKKAKRELAVETDPF 683
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE- 644
+ L + RQ ALK++ANS+YG G N + +A+ T+ GR+++ TK+ VE
Sbjct: 684 KKAVL----NGRQLALKVSANSVYGLTGATNGKLPCLAIASSTTSFGRQMIEKTKAEVEA 739
Query: 645 --------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGV 695
+ + EVIYGDTDS+M+ ++ ++G + +K K ++L+ + V
Sbjct: 740 KYNIANGYSHDAEVIYGDTDSVMVKFGTSELAEAMRLGQEAADYVSSKFIKPIKLEFEKV 799
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
Y LL+ KK+YA L +N + KG++ VRRD +L Q + E
Sbjct: 800 YFPYLLINKKRYAGLY---WTNPNKWDKMDTKGIETVRRDNCRLV---------QTVIET 847
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
S +D + E +K+ +DL + ++ L ITK LTK
Sbjct: 848 SLRMLLIDQDPEGAQEFVKETISDLLQNKIDMSNLVITKALTK 890
>gi|324120762|dbj|BAJ78772.1| DNA polymerase delta catalytic subunit [Papilio polytes]
Length = 1082
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 124/401 (30%), Positives = 195/401 (48%), Gaps = 58/401 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N ++++ V G L G+ + LL E Y++P
Sbjct: 506 KLMCIIN----SMEMARVTGVPLVCLQTRGQQIKVVSQLLRKAKEAGYLIP--------- 552
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-I 536
A G+G + G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT +
Sbjct: 553 -------AYHGQGSDDQ-FEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLV 604
Query: 537 PVRMLQD--SD---ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM---KQPNLSS 588
P M +D SD IT + + G+LP ++ L+ +R++ KA + K P S
Sbjct: 605 PPNMQKDLNSDDITITPTKNMFVKSNIRKGLLPEILESLLAARKKAKADLKDEKDPFKRS 664
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---- 644
L D RQ ALK++ANS+YG G + ++ VTA GR ++ TKS VE
Sbjct: 665 VL----DGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEFTKSEVEKKYT 720
Query: 645 -NLNYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVYKY 698
+ Y+ VIYGDTDS+M+ V + ++G + +K ++L+ + VY
Sbjct: 721 KSNGYKEDAVVIYGDTDSVMVKFGVKTLEESMELGREAAEFVTSKFVXPIKLEFEKVYYP 780
Query: 699 MLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
LL+ KK+YA L ++ KM C KG++ VRRD S L S + ++L
Sbjct: 781 YLLINKKRYAGLYFTRPDKYDKMDC----KGIETVRRDNSPLVSNMMSTCLQKLL----- 831
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+D + + K+I +DL + ++ L ITK+LTK
Sbjct: 832 ----IDRDPEGAVNYAKQIISDLLCNRIDISQLVITKELTK 868
>gi|324120710|dbj|BAJ78746.1| DNA polymerase delta catalytic subunit [Karoophasma biedouwense]
Length = 992
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 194/409 (47%), Gaps = 62/409 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL ++ Y++P
Sbjct: 418 KLMCFINYMEMA----RVTGVPLSCLLTRGQQIKVVSQLLRKAKDRGYLIP--------- 464
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
A G + + + G V+EPKKG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 465 -------AYSGAPQDEQ-FEGATVIEPKKGYYADPIATLDFSSLYPSIMMAHNLCYTTLL 516
Query: 538 VRMLQDSDI------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL 591
+ +DS T + V G+LP ++ L+ +R++ KA +K L +D
Sbjct: 517 RQGAKDSLTPDQYTKTPASNLFVKASVRKGLLPEILENLLAARKKAKADLK---LETDPF 573
Query: 592 MQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-NLNY 648
Q D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE N
Sbjct: 574 KQKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRVMIEQTKQEVEQQFNV 633
Query: 649 E--------VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYM 699
VIYGDTDS+MI V + +G + + + K ++L+ + VY
Sbjct: 634 ANGYQHDAVVIYGDTDSVMIKFGVKSLEEAMSLGREAAAFVSAKFVHPIKLEFEKVYFPY 693
Query: 700 LLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DEQ 755
LL+ KK+YA L +K + KM C KG++ VRRD L + + ++L D
Sbjct: 694 LLINKKRYAGLYFTKPDHYDKMDC----KGIETVRRDNCPLVANMMNTCLQKLLINRDPD 749
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+Y+ K++ +DL + ++ L ITK+L K+ K
Sbjct: 750 GAVNYA------------KQVISDLLCNRIDISQLVITKELAKSDYAAK 786
>gi|171185774|ref|YP_001794693.1| DNA polymerase II [Pyrobaculum neutrophilum V24Sta]
gi|170934986|gb|ACB40247.1| DNA polymerase Pol2 [Pyrobaculum neutrophilum V24Sta]
Length = 784
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 187/375 (49%), Gaps = 50/375 (13%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP IQ+++V G L + R E++LL + V P N++E
Sbjct: 349 LLPFLIQLSSVSGLPLDQVAAASVGNRVEWMLLRYAYRLGEVAP------NREE------ 396
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ-- 542
R+ Y G +VLEPK G Y+ ++L DF+S+YP+I+ +YN+ P L+
Sbjct: 397 ------REYEPYKGAIVLEPKPGMYEDVLVL-DFSSMYPNIMMKYNLS----PDTYLEPG 445
Query: 543 DSDITTLCEYLPE--HQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 597
+ D PE H+ G +P +K LVE R+ V+ K+ S D R
Sbjct: 446 EPDPPEGVNAAPEVGHRFRRSPLGFVPQVLKSLVELRKAVREEAKRYPPDSPEFRILDER 505
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 657
Q+ALK+ AN+MYG LG+ +R++ + +A VTA R IL + L V+YGDTDS
Sbjct: 506 QRALKVMANAMYGYLGWVGARWYKREVAESVTAFARAILKDVIEQARRLGIVVVYGDTDS 565
Query: 658 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLS 716
L + +VN V K+ ++ + +E+ +D Y +L + KK+YA L L
Sbjct: 566 LFVKKHVN----VDKLIQYVEEKYG-----IEIKVDKDYAKVLFTEAKKRYAGL----LR 612
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY--SLDDRLQNIHEHMK 774
+G++ +I G +VVR DWS+LA E V+ IL+ + + + ++ I E ++
Sbjct: 613 DGRI----DIVGFEVVRGDWSELAKEVQLKVVEIILNSRDVAEARRRVTQYVREIIERLR 668
Query: 775 KIRTDLDNGFVPLTL 789
+ + ++D+ + TL
Sbjct: 669 EYKFNVDDLIIWKTL 683
>gi|240147868|gb|ACS45169.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/116 (57%), Positives = 82/116 (70%), Gaps = 1/116 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKSVKNLMADPRESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
+IL NT L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE
Sbjct: 62 DILQNTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKLLKELVNKQYKSLE 117
>gi|405953822|gb|EKC21408.1| hypothetical protein CGI_10003964 [Crassostrea gigas]
gi|405967432|gb|EKC32593.1| hypothetical protein CGI_10008199 [Crassostrea gigas]
Length = 230
Score = 130 bits (326), Expect = 5e-27, Method: Composition-based stats.
Identities = 56/97 (57%), Positives = 75/97 (77%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
ML+LATF P+T+ +GGVDV G+ +K ++DL D VG +LV+S I GKG K + AG+GWA
Sbjct: 50 MLVLATFFPSTEFSTGGVDVLGEFLKCTVDLADLVGIHLVMSKIAGKGQLKFMVAGLGWA 109
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AE+++TRF+ LWVGARG EFDWKY+Q +SNI L+
Sbjct: 110 TAELLMTRFIPLWVGARGVEFDWKYVQMCFESNINLV 146
>gi|367037701|ref|XP_003649231.1| hypothetical protein THITE_2107682 [Thielavia terrestris NRRL 8126]
gi|346996492|gb|AEO62895.1| hypothetical protein THITE_2107682 [Thielavia terrestris NRRL 8126]
Length = 1103
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 165/325 (50%), Gaps = 38/325 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---------PVRMLQDSDI 546
Y G V+EP +G+YD I +DF SLYPSIIQ +N+C+TT+ ++ +D +
Sbjct: 576 YEGATVIEPTRGYYDVPIATLDFASLYPSIIQAHNLCYTTLIKKKDIEKWGLKKDEDYIV 635
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLT 604
T + + G+L +++L+ +R+Q K K+ +D + + RQ ALK++
Sbjct: 636 TPNGDMFVTTKQRKGLLSQILEELLAARKQAK---KELAAETDPFKKAVLNGRQLALKIS 692
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G N + +A+ T+ GR+++ TK VE + + +VIYGDT
Sbjct: 693 ANSVYGLTGATNGKLPCLEIASSTTSFGRQMIEKTKQEVEKRYCIANGYSHDAQVIYGDT 752
Query: 656 DSLMISCNVNDYDSVFKIG-NQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ D K+G + + +K K ++L+ + VY LL+ KK+YA L +K
Sbjct: 753 DSVMVKFGTKDLAEAMKLGEDASQFVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWTK 812
Query: 715 LSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
KM + KG++ VRRD L + V+ IL +D + E++
Sbjct: 813 PDKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVPGAQEYV 859
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTK 798
K DL + ++ L ITK LTK
Sbjct: 860 KDTIADLLQNKIDMSKLVITKALTK 884
>gi|324120760|dbj|BAJ78771.1| DNA polymerase delta catalytic subunit [Lucidina biplagiata]
Length = 1045
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 194/409 (47%), Gaps = 62/409 (15%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I++ V G ++ L G + LL + Y +P +Y + ++
Sbjct: 471 IEMARVTGVSITSLLTKGEQIKVVAQLLRHSQQSGYFMPTHRYAPSSEQ----------- 519
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQD-----S 544
Y G V+EP +G+Y I +DF+SLYPSI+ +N+C+TT+ ++D S
Sbjct: 520 ------YEGATVIEPIRGYYTDPIATLDFSSLYPSIMIAHNLCYTTLLHSGMKDKLGLTS 573
Query: 545 D---ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQK 599
D +T + V G+LP +++L+ +R++ K +K D +M+ + RQ
Sbjct: 574 DEITVTPSQNMFVKSSVRPGLLPEILQQLLAARKRAKDALKD---EQDPVMRAVLNGRQL 630
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEV 650
ALK++ANS+YG G + ++ VTA GR ++ T+ VE + +V
Sbjct: 631 ALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRSMIEQTRLEVERHYSVANGFENDAKV 690
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAA 709
IYGDTDS+M++ V + ++G + + K K ++L+ + VY LL+ KK+YA
Sbjct: 691 IYGDTDSVMVNFQVKTLEQTMELGREAAGLISQKFVKPIKLEFEKVYFPYLLINKKRYAG 750
Query: 710 LSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DEQSYTDYSLDDR 765
L ++ KM C KG++ VRRD L + + ++L D Y+
Sbjct: 751 LYFTRTDKYDKMDC----KGIETVRRDNCTLVVDVINTCLQKLLIYRDPDGAIAYA---- 802
Query: 766 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSR 814
K+I +DL V ++ L ITK+LTKA KV + LS+
Sbjct: 803 --------KRIISDLLQNNVDISQLVITKELTKADYATKV--AHVELSK 841
>gi|301090780|ref|XP_002895592.1| DNA polymerase delta catalytic subunit [Phytophthora infestans
T30-4]
gi|262097769|gb|EEY55821.1| DNA polymerase delta catalytic subunit [Phytophthora infestans
T30-4]
Length = 1609
Score = 130 bits (326), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 122/435 (28%), Positives = 203/435 (46%), Gaps = 59/435 (13%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ +L+ L I++ V G + + G+ + +LL + S V+P
Sbjct: 455 LKDAYLPLRLLDKLSYLVNFIEMARVSGVPIDFLIERGQQIKVFSMLLRKCKDASLVVPT 514
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
+N E+ G Y G V+EPKK FY I +DF SLYPSI+Q +
Sbjct: 515 LPRSQN---NEDVG------------YEGATVIEPKKAFYSVPIATLDFASLYPSIMQAF 559
Query: 530 NICFTTIPVRMLQDSDITTLC----EYLPEHQVDT------GILPSEIKKLVESRRQVKA 579
N+C++T ++ D+ L E P + GILP +++++ +R+Q K
Sbjct: 560 NLCYST----LVAPGDVDKLAPGDYEKSPSGDIFVTSKKKKGILPLILEEVLAARKQAKR 615
Query: 580 LMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
M ++ +Q + RQ ALK++ANS+YG G + P+A+ TA GR++L T
Sbjct: 616 DMNAATDPMEIAVQ-NGRQLALKVSANSVYGFTGAIVGQMPCIPIASSTTAYGRQLLFRT 674
Query: 640 KSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LE 689
+ VE + +V+YGDTDS+MI V+ + + + + ++ ++
Sbjct: 675 REEVEREYTIANGYKADAQVVYGDTDSVMIKFGVDTVEEAMPLAEEAAKRVSDIFPNPIK 734
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
L+ + VY LL+ KK+YA L +K + S KG++ VRRD L V+
Sbjct: 735 LEFEKVYFPYLLMNKKRYAGLLWTKPETYDKLDS---KGLETVRRDNCLLVRRMVDTVLR 791
Query: 750 QIL---DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVC 806
+IL D S Y+ K I +DL + ++LL ITK L K +
Sbjct: 792 KILINRDVPSAISYT------------KNIISDLLQNRIDISLLVITKGLKKTVDQDDYK 839
Query: 807 ITQIRLSRNRRGRRR 821
+ Q R R+R
Sbjct: 840 VKQAHTELAERMRKR 854
>gi|20089769|ref|NP_615844.1| DNA-directed DNA polymerase [Methanosarcina acetivorans C2A]
gi|19914708|gb|AAM04324.1| DNA-directed DNA polymerase [Methanosarcina acetivorans C2A]
Length = 937
Score = 130 bits (326), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 184/388 (47%), Gaps = 59/388 (15%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS-YVLPDKQYGKNKKEGEETGEANKG 488
I + V G++L + GG++ E LLL F K +LP K G+E +
Sbjct: 405 IALAQVSGSLLQEIVDGGQTSMVETLLLREFGLKDRVILP--------KPGDEL---SAE 453
Query: 489 KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT- 547
+ + GG VLEPKKG + +IL D+ SLYP+I+ +N+C+TT+ R D
Sbjct: 454 RYDMSSDLKGGEVLEPKKGLLENVLIL-DYKSLYPTIMMAHNLCYTTVVTRDRPDGKTIK 512
Query: 548 --TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 605
+ E++P +V GI+PS ++ L+ R K MK+ + ++ + D Q A+K+
Sbjct: 513 PPSGGEFVPP-EVFRGIVPSILEDLLNKRGDTKKRMKRTSDENEHRV-LDATQLAIKILL 570
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-------------------- 645
NS YG G+ +R ++ LA VT+ GR +LNT+ L+
Sbjct: 571 NSFYGYSGYARARLYSLTLANAVTSFGRSNILNTRDLINGRIGKIVLRNSAALLLEEAGK 630
Query: 646 -------LNYEVIYGDTDSLMISCNVN---DYDSVFKIGNQIKSECN-KLYKQLELDIDG 694
+ V YGDTDS+ + C + V +GN++ + L +EL+ +
Sbjct: 631 LSPQDRIVELSVAYGDTDSVFVHCKAKGDLSLEEVSLVGNRLSEIVSASLPDPMELEFES 690
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
V K LL+ KK+Y AL + + N ++KG++ VRRDW +L S V+ +L E
Sbjct: 691 VAKRALLIAKKRY-ALWLFEPRNSGWENKIKVKGMETVRRDWCELTSITLNRVLEFVLIE 749
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDN 782
+ EH++K+ +D+ N
Sbjct: 750 GD---------VDKAVEHVRKVVSDVRN 768
>gi|149235442|ref|XP_001523599.1| DNA polymerase delta catalytic subunit [Lodderomyces elongisporus
NRRL YB-4239]
gi|146452578|gb|EDK46834.1| DNA polymerase delta catalytic subunit [Lodderomyces elongisporus
NRRL YB-4239]
Length = 1087
Score = 130 bits (326), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 159/299 (53%), Gaps = 32/299 (10%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFT------TIPVRMLQDSDITTL 549
+ G V+EP++G+YD I +DF+SLYPSI+ +N+C+T TI L + D T
Sbjct: 565 FEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLISKNTIESYKLTEEDYTKT 624
Query: 550 C--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 605
+Y + GILP+ + +L+ +R++ K +K D+L + RQ ALK++A
Sbjct: 625 PNGDYFVKPNKKQGILPTILNELLTARKKAKTDLKNETDPFKKDVL---NGRQLALKISA 681
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + +++ VTA GRE++ TK+ V+ + +VIYGDTD
Sbjct: 682 NSVYGFTGATIGKLPCLAISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTD 741
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D ++ K+G + + ++ +K ++L+ + VY LL+ KK+YA L
Sbjct: 742 SVMVKFGYQDLETCMKLGEEAANYVSQKFKNPIKLEFEKVYFPYLLINKKRYAGL---YW 798
Query: 716 SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE------QSYTDYSLDDRLQN 768
+N K + KG++ VRRD +L V+ IL+E Q + ++ D LQN
Sbjct: 799 TNPKKFDKMDTKGIETVRRDNCRLVQNVITKVLEFILEERDVEKAQRFVKQTIADLLQN 857
>gi|254567878|ref|XP_002491049.1| Catalytic subunit of DNA polymerase delta [Komagataella pastoris
GS115]
gi|238030846|emb|CAY68769.1| Catalytic subunit of DNA polymerase delta [Komagataella pastoris
GS115]
gi|328352425|emb|CCA38824.1| DNA polymerase delta subunit 1 [Komagataella pastoris CBS 7435]
Length = 1093
Score = 130 bits (326), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 184/348 (52%), Gaps = 42/348 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---P----VRMLQDSD--I 546
Y G V++P +G+YD + +DF SLYPSI+ +N+C+TT+ P + +++D D +
Sbjct: 566 YEGATVIDPVRGYYDVPVATLDFASLYPSIMMAHNLCYTTLLNKPTIDRLGLVKDKDYIL 625
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLT 604
T ++ + + GILP+ +++L+ +R++ K +K +D + + RQ ALK++
Sbjct: 626 TPNGDFFVKEDLRKGILPTILQELLAARKKAKYDLKT---ETDPFKKQVLNGRQLALKIS 682
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + +++ VTA GRE++ TK V+ + + +VIYGDT
Sbjct: 683 ANSVYGFTGATIGKLPCLAISSSVTAFGREMIEATKQAVQERYTIKNGYDHDAQVIYGDT 742
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ ND K+G + + + ++K ++L+ + VY LL+ KK+YA L
Sbjct: 743 DSVMVKFGENDLRKCMKLGEEAAAFVSTIFKNPIKLEFEKVYFPYLLINKKRYAGL---Y 799
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR-LQNIHEHM 773
+N + KG++ VRRD +L VI+++L +Y L+ R ++ +
Sbjct: 800 WTNPDKYDKMDTKGIETVRRDNCRLVQN----VITKVL------EYMLELRDVEGAENFV 849
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRR 821
K+ DL V L+ L ITK L++ GK Q + R R+R
Sbjct: 850 KQTIADLLQDRVDLSQLVITKALSRQDYAGK----QAHVELAERMRKR 893
>gi|150400109|ref|YP_001323876.1| DNA polymerase Pol2 [Methanococcus vannielii SB]
gi|150012812|gb|ABR55264.1| DNA polymerase Pol2 [Methanococcus vannielii SB]
Length = 810
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 122/402 (30%), Positives = 194/402 (48%), Gaps = 49/402 (12%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL + + V L S+ E+LLL ++ V P+K G
Sbjct: 364 LPLEVMFSRVVNQSLFDINRMSSSQMVEYLLLKNSYKLGVVSPNKPSG------------ 411
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
N+ + R +++Y GG V EP KG ++ II MDF SLYPSII +NI TI +
Sbjct: 412 NEYQKRIRSSYEGGYVKEPLKGIHED-IISMDFLSLYPSIIMSHNISPETINCDCCNFKE 470
Query: 546 I-----TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY---DIR 597
T C + TGI+P + L+ R+++K ++K+ L ++ +Y D
Sbjct: 471 AEKVLGHTFC------KKQTGIVPKTLMDLINRRKKIKEILKEKALKNEFDEEYKILDYE 524
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 657
QK++K+ ANS YG L FP +R++++ A + T GR + T EN + VIY DTD
Sbjct: 525 QKSIKVLANSHYGYLAFPMARWYSKDCAEVTTHLGRSYIQKTIEEAENFGFNVIYADTDG 584
Query: 658 LMISCN-----VNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSI 712
N ++ + K +K+ +KL ++EL+ +G +K + + KKKYA +
Sbjct: 585 FYSKWNSKNGIISKEKLLEKTKEFLKTINDKLPGEMELEFEGHFKRGIFVTKKKYALID- 643
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
N K+ IKG++VVRRDWS ++ + K V+ ++L + D +NI
Sbjct: 644 ---ENEKV----TIKGLEVVRRDWSNISKKTQKNVLDELLKHGNI------DSAKNI--- 687
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSR 814
++K +L G V L I QLTK E K + +++
Sbjct: 688 IQKTIDELKKGNVDKEDLLIHTQLTKRIEDYKTTAPHVEVAK 729
>gi|83642849|ref|YP_438136.1| ORF9 [Ovine herpesvirus 2]
gi|61970963|gb|AAX58048.1| ORF9 [Ovine herpesvirus 2]
Length = 998
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 116/409 (28%), Positives = 186/409 (45%), Gaps = 79/409 (19%)
Query: 442 RTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLV 501
R + G+ R LL A E+ Y+LP T A G Y G V
Sbjct: 516 RVITDGQQIRVFACLLAAAQEQGYILP-----------MPTAGATSG-------YQGATV 557
Query: 502 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDITTLCEY-------L 553
+ P GFY+ ++++DF SLYPSIIQ +N+C++T IP L + T +Y
Sbjct: 558 INPISGFYNTPVLVVDFASLYPSIIQAHNLCYSTIIPHENLSNFPDLTPNDYETFFISSG 617
Query: 554 PEHQV----DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
P H V +L S +K + R+ ++ ++Q L D +Q A+K+T NS+Y
Sbjct: 618 PVHFVKKHKSESLLASLLKTWLAKRKAIRKELEQCQ-DEKLRAILDKQQLAIKVTCNSVY 676
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN---------------------- 647
G G + +A VT +GR +L TK VENL+
Sbjct: 677 GFTGVASGMLPCLMIAETVTLQGRTMLEKTKQFVENLDVQSLQQICPTQTLKIHAQHPTP 736
Query: 648 -YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY--KQLELDIDGVYKYMLLLKK 704
+ V+YGDTDSL I+C D D+V + +++ S + L ++L+ + V++ +LLL K
Sbjct: 737 RFTVVYGDTDSLFINCEGFDMDTVLEFSDRLASHTSSLLFSAPIKLESEKVFQCLLLLTK 796
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI------------SQIL 752
K+Y + LSN K++ +KGVD+VR+ + + V+ +Q L
Sbjct: 797 KRYVGI----LSNNKIL----MKGVDLVRKTACTYVQDVTRSVLELILRDSNVKAAAQTL 848
Query: 753 DEQ---SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+Q S + L + + + + +DL N VPL L + + +K
Sbjct: 849 SQQPVASCYKHGLPIGFLAVIDILNQSYSDLKNNRVPLARLTYSTEFSK 897
>gi|392574795|gb|EIW67930.1| hypothetical protein TREMEDRAFT_69477 [Tremella mesenterica DSM
1558]
Length = 1056
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 104/332 (31%), Positives = 172/332 (51%), Gaps = 40/332 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSDI-- 546
Y G V+EP KG+YD I +DF SLYPSI+ +N+C+TT+ +++++ D
Sbjct: 534 YEGATVIEPTKGYYDVPIATLDFASLYPSIMMAHNLCYTTLLDKGTIERLKLVEGEDYVH 593
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA---LMKQPNLSSDLLMQYDIRQKALKL 603
T +Y + G+LP+ ++ L+++R++ K + K P + L D RQ ALK+
Sbjct: 594 TPNNDYFATTKRRKGLLPTVLRNLLDARKRAKQDLKVEKDPFRRAVL----DGRQLALKI 649
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-----NLNYE----VIYGD 654
+ANS+YG G + +++ VTA GR+++ TK VE YE VIYGD
Sbjct: 650 SANSVYGFTGATVGKLPCLAISSSVTAFGRQMIEFTKQQVEAEFCVANGYENDAKVIYGD 709
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D + ++G + + K K ++L+ + VY LL+ KK+YA L +
Sbjct: 710 TDSVMVRFGTPDLATAMRLGAEAAELVSAKFIKPIKLEFEKVYFPYLLISKKRYAGLYWT 769
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
K KM + KG++ VRRD +L S + + ++L +D ++ ++
Sbjct: 770 KTEKYDKM----DTKGIETVRRDNCRLVSTVIETCLFKML---------IDRDVKGAEDY 816
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+K +DL + ++ L ITK L KA K
Sbjct: 817 VKSTISDLLQNKIDMSQLVITKALAKADYAAK 848
>gi|195442888|ref|XP_002069178.1| GK23632 [Drosophila willistoni]
gi|194165263|gb|EDW80164.1| GK23632 [Drosophila willistoni]
Length = 1093
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 105/337 (31%), Positives = 170/337 (50%), Gaps = 47/337 (13%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----------RMLQDSD 545
Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ + ++QD
Sbjct: 567 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLILGGSKDKLKNKGLIQDDQ 626
Query: 546 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKAL 601
+ T Y + ++ G+LP ++ L+ +R++ KA +K + D D RQ AL
Sbjct: 627 VECTPANNYFVKAELRRGLLPEILESLLAARKRAKADLK---VEKDPFKRQVLDGRQLAL 683
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NYE----VIY 652
K++ANS+YG G + ++ VTA GR ++ TK+ VE YE VIY
Sbjct: 684 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKTEVETHYTRSNGYENDAVVIY 743
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M++ V + ++G + +K K ++L+ + VY LL+ KK+YA L
Sbjct: 744 GDTDSVMVNFGVKSLERSMELGREAAELVSSKFVKPIKLEFEKVYYPYLLINKKRYAGLY 803
Query: 712 ISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE---QSYTDYSLDDRLQ 767
++ + KM C KG++ VRRD S L + + ++L E + DY+
Sbjct: 804 FTRPEAYDKMDC----KGIETVRRDNSPLVANLMNSCLQKLLIERNPEGAVDYA------ 853
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
K++ DL + ++ L ITK+L K K
Sbjct: 854 ------KQVIADLLCNRIDISQLVITKELAKTDYAAK 884
>gi|170693324|ref|ZP_02884484.1| DNA-directed DNA polymerase [Burkholderia graminis C4D1M]
gi|170141854|gb|EDT10022.1| DNA-directed DNA polymerase [Burkholderia graminis C4D1M]
Length = 788
Score = 129 bits (325), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 108/371 (29%), Positives = 174/371 (46%), Gaps = 62/371 (16%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
+ +I + +LP ++ V G R+ GG L + H + YV P+
Sbjct: 342 VTRIFAKTELLPFLLERATVTGLPADRS--GGSVAAFTHLYMPRMHRQGYVAPNI----- 394
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
G+ G AA GG V++ + G YD ++L D+ SLYPSII+ + I
Sbjct: 395 ---GDVAG----------AASPGGFVMDSRPGLYDSVLVL-DYKSLYPSIIRTFLIDPVG 440
Query: 536 IPVRMLQDSDITTLCEYLPEHQVDT-GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
+ ML D ++ +L T LPS + ++ + R K +P LS
Sbjct: 441 LVEGMLNPGDDQSVPGFLGARFSRTRHCLPSIVSQVWQGRETAKREQNKP-LS------- 492
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 654
+ALK+ N+ YG LG RFF LA+ +T +G EI+ T+ L++ YEVIYGD
Sbjct: 493 ----QALKIIMNAFYGVLGSTGCRFFDPRLASSITMRGHEIMHRTRELIQAEGYEVIYGD 548
Query: 655 TDSLMISC-NVNDYDSVFKIGNQIKSECNKLYKQ-----------LELDIDGVYK--YML 700
TDS + + ++ + +IG + N ++Q LEL + Y+ +M
Sbjct: 549 TDSTFVWLRHAHNEEEAGRIGRALVEHINAWWRQDLQQRFGLDSALELQFERHYRRFFMP 608
Query: 701 LLK------KKKYAALSISKLSNGKMICSQEI--KGVDVVRRDWSQLASEAGKFVISQIL 752
++ KK+YA L++S ++G S+EI KG++ VR DW+ LA + + + +I
Sbjct: 609 TIRGAEEGSKKRYAGLTVS--ADG----SEEIVYKGLETVRTDWTPLAQQFQQELYRRIF 662
Query: 753 DEQSYTDYSLD 763
+Q Y DY D
Sbjct: 663 TQQPYQDYVRD 673
>gi|388580039|gb|EIM20357.1| putative delta DNA polymerase [Wallemia sebi CBS 633.66]
Length = 1060
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 173/344 (50%), Gaps = 51/344 (14%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLC----- 550
Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT +L + L
Sbjct: 539 YEGATVIEPRRGYYDVPITTLDFSSLYPSIMMAHNLCYTT----LLDPQTVERLKLKEGE 594
Query: 551 EYLPEHQVDT--------GILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQK 599
+Y+ D G+LP ++ L+ +R++ +A +K P + L D RQ
Sbjct: 595 DYIKTPNNDMFVTPVKRKGLLPVVLQDLISARKRARADIKSEKDPFRRAVL----DGRQL 650
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NY----EV 650
ALK++ANS+YG G + P+++ TA GR ++ TK VE+ NY EV
Sbjct: 651 ALKVSANSVYGFTGATIGKLPCLPISSSTTAYGRRMIERTKEEVESHYKVSNNYSHDAEV 710
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAA 709
+YGDTDS+MI D ++ K+G + +K ++L+ + VY LL+ KK+YA
Sbjct: 711 VYGDTDSVMIKFGCRDLETAMKLGAEAAGVISSKFPNPIKLEFEKVYYPYLLINKKRYAG 770
Query: 710 LSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 768
L + L KM + KG++ VRRD +L + ++L +D ++
Sbjct: 771 LYWTGLEKYDKM----DTKGIETVRRDNCRLVGTVITTCLHKML---------IDRDVKA 817
Query: 769 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK---VCITQ 809
++ K + ++L + ++ L ITK LTK K VC+ +
Sbjct: 818 AEDYTKHVISELLQNKIDMSQLVITKALTKTEYDAKQAHVCLAE 861
>gi|320581797|gb|EFW96016.1| Catalytic subunit of DNA polymerase delta [Ogataea parapolymorpha
DL-1]
Length = 1102
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 97/324 (29%), Positives = 172/324 (53%), Gaps = 36/324 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSD--I 546
Y G V+EP +G+YD I +DF SLYPSI+ +N+C+TT+ + + QD D +
Sbjct: 583 YEGATVIEPVRGYYDVPIATLDFASLYPSIMMAHNLCYTTLLNKQTVERLGLKQDEDYIV 642
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLT 604
T + + GILP+ +++L+ +R++ K +K+ +D + + RQ ALK++
Sbjct: 643 TPNGDMFVHPHLRKGILPTILQELLAARKKAKQDLKK---ETDPFKKQVLNGRQLALKIS 699
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + +++ VTA GR ++ TK+ V+ + +VIYGDT
Sbjct: 700 ANSVYGFTGATIGKLPCLAISSSVTAFGRVMIEQTKAEVQRHYSIENGYEYDAQVIYGDT 759
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ +D ++ ++G + + + +K ++L+ + VY LL+ KK+YA L
Sbjct: 760 DSVMVKFGHSDMETCMRLGEEAAAYVSTKFKHPIKLEFEKVYFPYLLINKKRYAGLF--- 816
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
+N + + KG++ VRRD +L V+ IL+E++ ++ + +K
Sbjct: 817 WTNPRKFDKMDTKGIETVRRDNCRLVQNVITRVLELILEERN---------VEAAEQFVK 867
Query: 775 KIRTDLDNGFVPLTLLEITKQLTK 798
K DL V L+ L I+K L++
Sbjct: 868 KTIADLLQNRVDLSQLVISKALSR 891
>gi|156936857|ref|YP_001434653.1| DNA polymerase II [Ignicoccus hospitalis KIN4/I]
gi|156565841|gb|ABU81246.1| replicative DNA polymerase I [Ignicoccus hospitalis KIN4/I]
Length = 786
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 191/386 (49%), Gaps = 52/386 (13%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ EL +P Q++ + G L + + R E+ L+ + ++P N+ E
Sbjct: 351 MLAEL-FIPFGEQLSYLTGLPLDQVMAASVGYRVEWYLMRVAFVTNELVP------NRVE 403
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
RK A+Y G +VL P KG ++ +L DF+S+YP+I+ +YN+ T+ V
Sbjct: 404 ------------RKVASYKGAIVLRPLKGVHENVAVL-DFSSMYPNIMIKYNVGPDTL-V 449
Query: 539 R----MLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
R + D + Y+ + + D + L+ R+++K MK + L
Sbjct: 450 RPGEKVSPDEVYVSPAGYMFKKRPD-AFFKRSLVTLLNLRKEIKERMKSLSPEDPLYKLL 508
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 654
D RQKA+K+ AN+ YG +G+P++R++ + A VT+ GRE++L + L +VIYGD
Sbjct: 509 DNRQKAVKVLANAHYGYMGWPHARWYCRECAEAVTSWGRELILKAIQMARELGLKVIYGD 568
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSIS 713
TDSL + + D + V K+ +I+ E E+ ID +YK + + KK+YA +
Sbjct: 569 TDSLFV---IYDKEKVEKLIERIEKELG-----FEIKIDKIYKKLFFTEAKKRYAGI--- 617
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
L +G++ ++ G + VR DW+++A E + +I +L E + E++
Sbjct: 618 -LEDGRI----DVVGFEAVRGDWAEVAKEVQEKIIEIVLKEGD---------VNKAVEYV 663
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
I L G VP+ L I K L K+
Sbjct: 664 NSIIEKLRRGEVPIEKLVIWKTLEKS 689
>gi|242018791|ref|XP_002429857.1| DNA polymerase delta catalytic subunit, putative [Pediculus humanus
corporis]
gi|212514875|gb|EEB17119.1| DNA polymerase delta catalytic subunit, putative [Pediculus humanus
corporis]
Length = 1096
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 129/414 (31%), Positives = 198/414 (47%), Gaps = 78/414 (18%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
I K+MC +N + +A V G LS L G+ + LL EK Y++P N
Sbjct: 515 IEKLMCFINYMEMA----RVTGVPLSCLLTRGQQIKVVSQLLRKTKEKHYLMPTH----N 566
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+E + G V+EPKKG+Y I +DF+SLYPSI+ +N+C+TT
Sbjct: 567 SVGSDE-------------QFEGATVIEPKKGYYPDPIATLDFSSLYPSIMMAHNLCYTT 613
Query: 536 I--P-----VRMLQDSDITTLC-EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLS 587
+ P + + D TT + + + G+LP ++ L+ +R++ K +K N +
Sbjct: 614 LLRPGVKEKLNLEPDKYSTTPSNHFFVKKSIRKGLLPEILENLLTARKKAKTDLK--NET 671
Query: 588 SDLLMQ-YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
Q D RQ ALK++ANS+YG G + ++ VT+ GR ++ TK VE
Sbjct: 672 DPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTSYGRSMIEQTKQEVEMK 731
Query: 645 -NL------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC------------NKLY 685
N+ + EVIYGDTDS+MI K GN+ EC +K
Sbjct: 732 YNIANGYKHDSEVIYGDTDSVMI-----------KFGNKTLEECMELGREAAVYVSSKFI 780
Query: 686 KQLELDIDGVYKYMLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAG 744
++L+ + VY LL+ KK+YA L +K + KM C KG++ VRRD S L +
Sbjct: 781 SPIKLEFEKVYFPYLLISKKRYAGLYFTKTDTYDKMDC----KGLETVRRDNSPLVANMI 836
Query: 745 KFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+ +IL ++ D N + KK+ +DL + ++ L ITK+LTK
Sbjct: 837 TTCLQKILINRN------PDEAVN---YAKKVISDLLCNKIDISQLVITKELTK 881
>gi|406607376|emb|CCH41280.1| DNA polymerase delta catalytic subunit [Wickerhamomyces ciferrii]
Length = 1108
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 117/408 (28%), Positives = 195/408 (47%), Gaps = 56/408 (13%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A V G S L G+ + L E V+P+ Q G
Sbjct: 529 KLMCLVNYTEMA----RVTGVPFSFLLTRGQQIKVISQLFRKCLEIDLVVPNLQQG---- 580
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
G Y G V+EP +G+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 581 ------------GSSDVQYEGATVIEPHRGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL 628
Query: 537 --P----VRMLQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--L 586
P +++ +D D T ++ + GILP +++L+ +R++ K MK
Sbjct: 629 NKPTIERLKLEKDKDYTVSPSGDFFVKTSQRKGILPIILEELLSARKKAKKDMKTETDPF 688
Query: 587 SSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
D+L + RQ ALK++ANS+YG G + +++ VTA GR ++ TK V+
Sbjct: 689 KRDVL---NGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAFGRGMIEKTKQEVQDK 745
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVY 696
+ + EVIYGDTDS+M+ D ++ K+G + + K ++L+ + VY
Sbjct: 746 YTIANGYDYDSEVIYGDTDSVMVKFGYKDLETCMKLGEEAADFVSTKFLNPIKLEFEKVY 805
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
LL+ KK+YA L +N + + KG++ VRRD +L S ++ IL+++
Sbjct: 806 FPYLLINKKRYAGL---YWTNTEKFDKMDTKGIETVRRDNCRLVSNVITKILELILEKRD 862
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+++ +K+ DL V + L ITK L+++ K
Sbjct: 863 ---------VKSAENFVKQTIADLLQDRVDMQQLVITKALSRSDYANK 901
>gi|440635761|gb|ELR05680.1| DNA polymerase delta subunit 1 [Geomyces destructans 20631-21]
Length = 1102
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 161/326 (49%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT---------IPVRMLQDSDI 546
Y G V+EP +G+YD I +DF SLYPSIIQ +N+C+TT + ++ +D +
Sbjct: 576 YEGATVIEPTRGYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKASVDKLGLKKDEDYIV 635
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + + G+L + +L+ +R+Q K A+ P + L + RQ ALK+
Sbjct: 636 TPNGDMFCTAKQRKGLLTQILDELLTARKQAKRELAVETDPFKKAVL----NGRQLALKI 691
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + +A T+ GR+++ TK+ VE + +VIYGD
Sbjct: 692 SANSVYGLTGATVGKLPCLEIAGSTTSYGRQMIEKTKAEVEAKYTIANGYAHDAQVIYGD 751
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D K+G + +K K ++L+ + VY LL+ KK+YA L
Sbjct: 752 TDSVMVKFGTKDLAESMKLGEEAAQYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGL--- 808
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+N + KG++ VRRD +L + V+ IL +D +Q +++
Sbjct: 809 YWTNPDKYDKMDTKGIETVRRDNCRLVQTTIETVLRMIL---------IDQDVQGAQDYV 859
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K +DL V + L ITK L KA
Sbjct: 860 KDTISDLLQNKVDMAKLVITKALAKA 885
>gi|408397517|gb|EKJ76659.1| hypothetical protein FPSE_03209 [Fusarium pseudograminearum CS3096]
Length = 1104
Score = 129 bits (325), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 166/326 (50%), Gaps = 40/326 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDITTLCEYLP 554
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT + + ++ ++ +Y+
Sbjct: 577 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLVSKKAIEAFNLQKDEDYIV 636
Query: 555 EHQVDT--------GILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
DT G+L +++L+ +R+Q K A+ P + L + RQ ALK+
Sbjct: 637 TPNGDTFVTIKQRKGLLAQILEELLSARKQAKRELAVETDPFKKAVL----NGRQLALKI 692
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + +A+ T+ GR+++ TK VE + + +VIYGD
Sbjct: 693 SANSVYGLTGATTGKLPCLEIASSTTSFGRKMIEKTKEEVEGRYNIANGYSHDAQVIYGD 752
Query: 655 TDSLMISCNVNDYDSVFKIGNQI-KSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+MI D ++G + K K K ++L+ + VY LL+ KK+YA L +
Sbjct: 753 TDSVMIKFGTKDLQEAMRLGEEASKYVSEKFVKPIKLEFEKVYFPYLLINKKRYAGLYWT 812
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
K KM + KG++ VRRD L + V+ IL +D + E+
Sbjct: 813 KPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVPGAQEY 859
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K+ DL V ++ L ITK LTK
Sbjct: 860 VKETIADLLQNKVDMSKLVITKALTK 885
>gi|11067381|ref|NP_067694.1| DNA polymerase delta catalytic subunit [Rattus norvegicus]
gi|3913500|sp|O54747.1|DPOD1_RAT RecName: Full=DNA polymerase delta catalytic subunit
gi|2687728|emb|CAA10946.1| DNA polymerase delta, catalytic subunit [Rattus norvegicus]
Length = 1103
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 167/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 577 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 636
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++
Sbjct: 637 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVS 692
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDT
Sbjct: 693 PNSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGYDANAKVVYGDT 752
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 753 DSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 812
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
S+ +M C KG++ VRRD L + + +IL +D H
Sbjct: 813 RSDAHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAH 859
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 860 AKDVISDLLCNRIDISQLVITKELTRA 886
>gi|321470374|gb|EFX81350.1| hypothetical protein DAPPUDRAFT_317527 [Daphnia pulex]
Length = 1139
Score = 129 bits (324), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 121/401 (30%), Positives = 193/401 (48%), Gaps = 57/401 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC N + +A V G LS L G+ + LL E+ ++P + +
Sbjct: 566 KLMCLTNYMEMA----RVTGVPLSYLLTRGQQIKVVSQLLRKAKEQGLLMPVHK----AE 617
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
GEE + G V+EP +G+Y + I +DF+SLYPSI+ +N+C+T++
Sbjct: 618 AGEE--------------FEGATVIEPIRGYYSQPIATLDFSSLYPSIMMAHNLCYTSLL 663
Query: 538 V-----RMLQDSDITTLC-EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL 591
++ +D I T Y + V G+LP ++ L+ +R++ K K + +D L
Sbjct: 664 NPRDKDKLKEDQYIKTPAGNYFVKASVRKGLLPEILEALLAARKKAK---KDLAVETDPL 720
Query: 592 MQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE----- 644
+ D RQ ALK++ANS+YG G + ++ VTA GR ++ T + VE
Sbjct: 721 RKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTAFGRMMIEKTSTEVEAKFRV 780
Query: 645 ----NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYM 699
+ +VIYGDTDS+M+ V+ +G + + K K + L+ + VY
Sbjct: 781 ENGYAHDAKVIYGDTDSVMVKFGVSTVAEAMVLGREAAEFVSAKFIKPINLEFEKVYFPY 840
Query: 700 LLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
LL+ KK+YA L +K KM C KG++ VRRD QL + + +IL
Sbjct: 841 LLINKKRYAGLYWTKPEQFDKMDC----KGIETVRRDNCQLVANLINTCLQKIL------ 890
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+D E+ K+ +DL V ++LL ITK+LTK
Sbjct: 891 ---MDRDPDGALEYAKQTISDLLCNKVDISLLVITKELTKT 928
>gi|187919364|ref|YP_001888395.1| DNA polymerase II [Burkholderia phytofirmans PsJN]
gi|187717802|gb|ACD19025.1| DNA-directed DNA polymerase [Burkholderia phytofirmans PsJN]
Length = 791
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 111/396 (28%), Positives = 184/396 (46%), Gaps = 69/396 (17%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
+ +I + +LP ++ +V G R+ GG L + H + YV P+
Sbjct: 345 VTRIFAKTELLPFLLERASVTGLPADRS--GGSVAAFTHLYMPRMHRQGYVAPNL----- 397
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
G+ G AA GG V++ + G YD ++L D+ SLYPSII+ + I
Sbjct: 398 ---GDVAG----------AASPGGFVMDSRPGLYDSVLVL-DYKSLYPSIIRTFLIDPVG 443
Query: 536 IPVRMLQDSDITTLCEYLPEHQVDT-GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
+ ML +D ++ +L T LPS + ++ + R K +P
Sbjct: 444 LVEGMLNPADDQSVPGFLGARFSRTRHCLPSIVGQVWQGRETAKRENNKP---------- 493
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 654
+ALK+ N+ YG LG RFF LA+ +T +G EI+ T+ L++ YEVIYGD
Sbjct: 494 --LSQALKIIMNAFYGVLGSTGCRFFDPRLASSITMRGHEIMHATRELIQGEGYEVIYGD 551
Query: 655 TDSLMISC-NVNDYDSVFKIGNQIKSECNKLYKQ-----------LELDIDGVYK--YML 700
TDS + + + + +IG + N ++Q LEL + Y+ +M
Sbjct: 552 TDSTFVWLKHAHSEEDASRIGRALVEHINAWWRQNLQERFGLDSALELQFERHYRRFFMP 611
Query: 701 LLK------KKKYAALSISKLSNGKMICSQEI--KGVDVVRRDWSQLASEAGKFVISQIL 752
++ KK+YA L+I L +G S++I KG++ VR DW+ LA + + + +I
Sbjct: 612 TIRGAEEGSKKRYAGLTI--LPDG----SEDIVYKGLETVRTDWTPLAQQFQQELYRRIF 665
Query: 753 DEQSYTDY-------SLDDRLQNIHEHMKKIRTDLD 781
+Q Y DY +LD +L + + K++R L+
Sbjct: 666 TQQPYQDYVRDYVRDTLDGKLDDQLVYRKRLRRPLE 701
>gi|448536009|ref|XP_003871049.1| Pol3 large subunit of DNA polymerase III [Candida orthopsilosis Co
90-125]
gi|380355405|emb|CCG24924.1| Pol3 large subunit of DNA polymerase III [Candida orthopsilosis]
Length = 1147
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 161/300 (53%), Gaps = 34/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRM--LQDSDITTL 549
Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT+ +R L ++D T
Sbjct: 625 YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIRAFGLTEADYTKT 684
Query: 550 C--EYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKALKLTA 605
+Y GILP+ + +L+ +R++ K +K + D+L + RQ ALK++A
Sbjct: 685 PNGDYFVHPDKKKGILPTILNELLTARKKAKTDLKNEKDPFKKDVL---NGRQLALKISA 741
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + +++ VTA GRE++ TK+ V+ + +VIYGDTD
Sbjct: 742 NSVYGFTGATIGKLPCLAISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTD 801
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D D+ K+G + + + K ++L+ + VY LL+ KK+YA L ++
Sbjct: 802 SVMVKFGYQDLDTCMKLGEEAANYVSTKFQNPIKLEFEKVYFPYLLINKKRYAGLYWTRP 861
Query: 716 SN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE------QSYTDYSLDDRLQN 768
KM + KG++ VRRD +L V+ IL+E Q + ++ D LQN
Sbjct: 862 DKFDKM----DTKGIETVRRDNCRLVQNVITKVLEFILEERNVDKAQRFVKQTIADLLQN 917
>gi|78127846|gb|ABB22230.1| DNA polymerase-like protein [Ovine herpesvirus 2]
Length = 998
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 185/409 (45%), Gaps = 79/409 (19%)
Query: 442 RTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLV 501
R + G+ R LL A E+ Y+LP G + Y G V
Sbjct: 516 RVITDGQQIRVFACLLAAAQEQGYILPMPTTGAT------------------SGYQGATV 557
Query: 502 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDITTLCEY-------L 553
+ P GFY+ ++++DF SLYPSIIQ +N+C++T IP L + T +Y
Sbjct: 558 INPISGFYNTPVLVVDFASLYPSIIQAHNLCYSTIIPHENLSNFPDLTPNDYETFFISSG 617
Query: 554 PEHQV----DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
P H V +L S +K + R+ ++ ++Q L D +Q A+K+T NS+Y
Sbjct: 618 PVHFVKKHKSESLLASLLKTWLAKRKAIRKELEQCQ-DEKLRAILDKQQLAIKVTCNSVY 676
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN---------------------- 647
G G + +A VT +GR +L TK VENL+
Sbjct: 677 GFTGVASGMLPCLMIAETVTLQGRTMLEKTKQFVENLDVQSLQQICPTQTLKIHAQHPTP 736
Query: 648 -YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY--KQLELDIDGVYKYMLLLKK 704
+ V+YGDTDSL I+C D D+V + +++ S + L ++L+ + V++ +LLL K
Sbjct: 737 RFTVVYGDTDSLFINCEGFDMDTVLEFSDRLASHTSSLLFSAPIKLESEKVFQCLLLLTK 796
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI------------SQIL 752
K+Y + LSN K++ +KGVD+VR+ + + V+ +Q L
Sbjct: 797 KRYVGI----LSNNKIL----MKGVDLVRKTACTYVQDVTRSVLELILRDSNVKAAAQTL 848
Query: 753 DEQ---SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+Q S + L + + + + +DL N VPL L + + +K
Sbjct: 849 SQQPVASCYKHGLPIGFLAVIDILNQSYSDLKNNRVPLARLTYSTEFSK 897
>gi|302308438|ref|NP_985361.2| AFL189Wp [Ashbya gossypii ATCC 10895]
gi|299790630|gb|AAS53185.2| AFL189Wp [Ashbya gossypii ATCC 10895]
gi|374108589|gb|AEY97495.1| FAFL189Wp [Ashbya gossypii FDAG1]
Length = 1092
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 158/300 (52%), Gaps = 33/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRMLQ-----DSDI 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ V+ LQ D I
Sbjct: 582 YQGATVIEPIRGYYDIPIATLDFNSLYPSIMMAHNLCYTTLCNKATVQRLQLKENEDYII 641
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 604
T +Y + GILP +++L+ +R++ K +K+ D+L + RQ ALK++
Sbjct: 642 TPNGDYFVTSKKRRGILPIILEELIAARQRAKGELKKETDPFKKDVL---NGRQLALKIS 698
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 655
ANS+YG G + +++ VTA GR ++ TK VE + V+YGDT
Sbjct: 699 ANSVYGFTGATVGKLPCLSISSSVTAYGRTMIETTKRAVEEKYTIKNGYKHDAIVVYGDT 758
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+MI N+ ++G + + + L+K + L+ + VY LL+ KK+YA L +K
Sbjct: 759 DSVMIKFGTNELKQTMELGAEAAAYVSSLFKHPINLEFEKVYFPYLLINKKRYAGLYWTK 818
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS------YTDYSLDDRLQN 768
+ + KG+ VRRD L S ++ IL E++ + + +++D LQN
Sbjct: 819 PEKYDKL---DQKGLASVRRDSCPLVSIVMNKILRMILIERNVPGALKFVENTIEDLLQN 875
>gi|62736742|gb|AAX97697.1| DNA polymerase [Sulfophobococcus zilligii]
Length = 797
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 110/402 (27%), Positives = 197/402 (49%), Gaps = 68/402 (16%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP A+Q++ + L + R E++L++ ++++ ++P N++E
Sbjct: 362 LPFAMQLSYITRIPLDQVGAASVGFRLEWVLMYEAYKRNELIP------NREE------- 408
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R+ Y G +V +P G ++ I ++DF S+YPSI+ +YN+ D+
Sbjct: 409 -----REVETYKGAVVFKPVPGIHED-IAVLDFTSMYPSIMIKYNVG---------PDTL 453
Query: 546 ITTLCE-----YLPE--HQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYD 595
+ LCE PE H G + KL++ R+ ++ MK+ +S D
Sbjct: 454 VGELCEGEGYNIAPEVGHCFRAEPPGFFKDVLVKLLQLRKSIREEMKKYPPTSYEYRLLD 513
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDT 655
RQ+A+K+ AN+ YG +G+ +R++ + A VTA GR+++ L NL +VIYGDT
Sbjct: 514 ERQRAVKILANATYGYMGWTGARWYCKACAEAVTAWGRQLIRKAVDLASNLGLKVIYGDT 573
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL--ELDIDGVYKYMLLLK-KKKYAALSI 712
DSL ++ N +IK + ++L E+ +D VYK + + KK+YA L
Sbjct: 574 DSLFVTYN----------PEKIKIFIELVERELGFEIKVDKVYKRVFFTEAKKRYAGL-- 621
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
L +G++ +I G + VR DW+++A E + ++ +L E S + E+
Sbjct: 622 --LEDGRI----DIVGFEAVRGDWAEVAKEVQENIVEILLKEGS---------VDKAVEY 666
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSR 814
++ + ++L G +PL L I K LTK E + ++ +R
Sbjct: 667 VRTVISNLMQGKIPLEKLIIWKTLTKPLEEYEATAPHVKAAR 708
>gi|403360889|gb|EJY80140.1| DNA polymerase delta catalytic subunit [Oxytricha trifallax]
Length = 870
Score = 129 bits (324), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 106/334 (31%), Positives = 179/334 (53%), Gaps = 38/334 (11%)
Query: 481 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVR 539
E G +N+GK + G LV++P + F+ + I ++DF SLYPSI+ +NIC++T IP +
Sbjct: 519 ERGPSNEGK------FEGALVIDPNRDFFLEPIAILDFASLYPSIMLAHNICYSTLIPPK 572
Query: 540 MLQDSDI-----TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
++ + T ++ + +V GILP +++L+E+R++ K K+ LS + +
Sbjct: 573 AVKFYNPDHYLKTPTGDHFIKAEVKKGILPLILEELIEARKKAK---KEFALSDEKAV-L 628
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--------- 645
D RQ A+K+ ANS+YG G + +++ VTA GRE++ +K+ V
Sbjct: 629 DGRQMAMKVAANSVYGFTGAQIGQLPCIAISSSVTAYGREMIEMSKNFVITRFNKQNGYK 688
Query: 646 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKK 704
+ EVIYGDTDS+M+ V ++G + K + + ++L+ + VY LLL K
Sbjct: 689 YDSEVIYGDTDSVMVKFGVKSVAEAMELGQEAAEYVTKFFTEPIKLEFEKVYYPYLLLNK 748
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
K+YA L +K I + KG++ VRRD L + + ++ IL E+ ++ +LD
Sbjct: 749 KRYAGLLWTKPDKFDCI---DAKGIETVRRDSCGLVQDTVQNSLNMILIERD-SNKALD- 803
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+ K I +DL + L+LL I+K L K
Sbjct: 804 -------YCKGIISDLLQNRIDLSLLVISKGLGK 830
>gi|410084320|ref|XP_003959737.1| hypothetical protein KAFR_0K02460 [Kazachstania africana CBS 2517]
gi|372466329|emb|CCF60602.1| hypothetical protein KAFR_0K02460 [Kazachstania africana CBS 2517]
Length = 1132
Score = 129 bits (324), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 150/279 (53%), Gaps = 29/279 (10%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSD--I 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ +++ +D D I
Sbjct: 622 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLKLKKDKDYII 681
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM---KQPNLSSDLLMQYDIRQKALKL 603
T +Y ++ GILP +++L+ +R++ K + K P D+L + RQ ALK+
Sbjct: 682 TPNGDYFVSDKLRRGILPIILEELISARKRAKKDLRDEKDP-FKRDVL---NGRQLALKI 737
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGD 654
+ANS+YG G + +++ VTA GRE+++ TK+ V+ + +V+YGD
Sbjct: 738 SANSVYGFTGATVGKLPCLAISSSVTAFGREMIMRTKTAVQEKYSVKNGYKHDAQVVYGD 797
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D +G + + + L+K + L+ + Y LL+ KK+YA L +
Sbjct: 798 TDSVMVKFGTTDLQEAMDLGAEAAAYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLYWT 857
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
K+ + + KG+ VRRD L S V+ IL
Sbjct: 858 KVEKYDKL---DQKGLASVRRDSCSLVSIVMNKVLKMIL 893
>gi|242014290|ref|XP_002427824.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212512293|gb|EEB15086.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 225
Score = 129 bits (324), Expect = 9e-27, Method: Composition-based stats.
Identities = 61/97 (62%), Positives = 74/97 (76%), Gaps = 3/97 (3%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
M++LATF PT D S G +F + K+S+D D VG YLVLS IPGKGHAK+LTAG+GWA
Sbjct: 50 MMVLATFFPTLD--STGCTLF-EFCKISVDFADLVGLYLVLSRIPGKGHAKVLTAGIGWA 106
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
GAE+ILTR + LW+GARG EF WKYIQ +SNI L+
Sbjct: 107 GAEIILTRCILLWIGARGQEFHWKYIQKCFESNISLM 143
>gi|403213728|emb|CCK68230.1| hypothetical protein KNAG_0A05660 [Kazachstania naganishii CBS
8797]
Length = 1095
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 159/300 (53%), Gaps = 33/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSD--I 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ + + +D D I
Sbjct: 585 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERMNLKKDEDYII 644
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKALKLT 604
T +Y ++ GILP + +L+ +R + K ++ + + D+L + RQ ALK++
Sbjct: 645 TPNGDYFVTDKLRRGILPIILDELISARSRAKKDLRDEKDSFKRDVL---NGRQLALKIS 701
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + +++ VT+ GR++++ TK+ V+ + V+YGDT
Sbjct: 702 ANSVYGFTGATVGKLPCLAISSSVTSFGRDMIMTTKNAVQKKYSIENGYKHDAVVVYGDT 761
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ ND V +G + + + L+K + L+ + Y LL+ KK+YA L
Sbjct: 762 DSVMVKFGSNDLKEVMDLGTEAAAYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLF--- 818
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS------YTDYSLDDRLQN 768
+N + KG+ VRRD L S V+ +IL E++ + +++D LQN
Sbjct: 819 WTNPDHYDKLDQKGLASVRRDSCSLVSIVMNKVLKKILIERNVPGALDFVKQTINDILQN 878
>gi|336259478|ref|XP_003344540.1| hypothetical protein SMAC_07548 [Sordaria macrospora k-hell]
gi|380093254|emb|CCC08912.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1071
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 166/327 (50%), Gaps = 42/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---------PVRMLQDSDI 546
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT+ ++ +D +
Sbjct: 544 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKRDIERWNLKKDEDYIV 603
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + + G+L +++L+ +R+Q K A+ K P + L + RQ ALK+
Sbjct: 604 TPNGDMFVTTKQRKGLLAQILEELLSARKQAKRELAVEKDPFKKAVL----NGRQLALKV 659
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G N + +A+ VT+ GR+++ TK VE + + +VIYGD
Sbjct: 660 SANSVYGLTGATNGKLPCLEIASSVTSFGRQMIERTKKEVEERYTIANGYSHDAQVIYGD 719
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSE--CNKLYKQLELDIDGVYKYMLLLKKKKYAALSI 712
TDS+M+ D K+G Q SE K K ++L+ + VY LL+ KK+YA L
Sbjct: 720 TDSVMVKFGTKDLAEAMKLG-QDASEYVSGKFVKPIKLEFEKVYFPYLLINKKRYAGLYW 778
Query: 713 SKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+K KM + KG++ VRRD L + V+ IL +D +
Sbjct: 779 TKPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVPGAEA 825
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTK 798
++K DL + ++ L ITK LTK
Sbjct: 826 YVKDTIADLLQNKIDMSKLVITKALTK 852
>gi|431920730|gb|ELK18503.1| DNA polymerase delta catalytic subunit [Pteropus alecto]
Length = 1109
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 119/412 (28%), Positives = 200/412 (48%), Gaps = 57/412 (13%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ L VL A+++ V G LS L G+ + LL + ++P
Sbjct: 513 LKDAYLPLRLLERLMVLVNAMEMARVTGVPLSYLLARGQQVKVVSQLLRQAMREGLLMP- 571
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +
Sbjct: 572 ----VVKTEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAH 614
Query: 530 NICFTTI--P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
N+C+TT+ P + + +D I T + + V G+LP ++ L+ +R++ KA +
Sbjct: 615 NLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAEL 674
Query: 582 KQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
+ +D L D RQ ALK++ANS+YG G + ++ VT GR+++ T
Sbjct: 675 AR---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKT 731
Query: 640 KSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LE 689
K LVE + N +V+YGDTDS+M V+ +G + + + +
Sbjct: 732 KQLVESKYTIESGYSANAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIR 791
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFV 747
L+ + VY LL+ KK+YA L S + +M C KG++ VRRD L +
Sbjct: 792 LEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTAS 847
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H++ + +DL + ++ L ITK+LT+A
Sbjct: 848 LRRLL---------IDRDPKGAVAHVQDVISDLLCNRIDISQLVITKELTRA 890
>gi|189207907|ref|XP_001940287.1| DNA polymerase delta catalytic subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187976380|gb|EDU43006.1| DNA polymerase delta catalytic subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1115
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 192/404 (47%), Gaps = 60/404 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGN-VLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
K+MC +N +A ++T V N +LSR G+ R L + ++PD
Sbjct: 524 KLMCLVNYTEMA-RVTGVPFNYILSR----GQQIRFISQLFRKALDHQLIIPDL------ 572
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+G Y G V+EPK+G+Y + +DF SLYPSI+Q +N+C+TT
Sbjct: 573 ----------PNQGDSNDQYEGATVIEPKRGYYRDPVATLDFASLYPSIMQAHNLCYTTW 622
Query: 537 -------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQP 584
++M +D D +T + + G+L +++++ +R++ K A P
Sbjct: 623 LDKQTVEKLKMKKDEDYIVTPHGDMFCTAKTRKGLLTEILEEVLSARKKAKRELATETDP 682
Query: 585 NLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+ L + RQ ALK+TANS+YG G N + +A+ T+ GR+++ TK+ VE
Sbjct: 683 FKKAVL----NGRQLALKVTANSVYGLTGATNGKLPCLAIASSTTSFGRQMIERTKAEVE 738
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ EVIYGDTDS+M+ ++ + K+G + + +K K ++L+ +
Sbjct: 739 AKYNIANGYTHDAEVIYGDTDSVMVKFGTSNLEEAMKLGEEAATYVTSKFLKPIKLEFEK 798
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
VY LL+ KK+YA L +N + KG++ VRRD +L Q + E
Sbjct: 799 VYFPYLLINKKRYAGLY---WTNPHKWDKMDTKGIETVRRDNCRLV---------QTVIE 846
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
S +D + +K+ DL V ++ L ITK LTK
Sbjct: 847 TSLRMLLIDQDPEGAQAFVKETIADLLQNKVDMSNLVITKALTK 890
>gi|452210573|ref|YP_007490687.1| Archaeal DNA polymerase I [Methanosarcina mazei Tuc01]
gi|452100475|gb|AGF97415.1| Archaeal DNA polymerase I [Methanosarcina mazei Tuc01]
Length = 926
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 186/390 (47%), Gaps = 63/390 (16%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS-YVLPDKQYGKNKKEGEETGEANKG 488
I + V G++L + GG++ E LLL F + +LP K G+E +
Sbjct: 397 IALAQVSGSLLQEIVDGGQTSMVETLLLREFGLRDRVILP--------KPGDEL---SAE 445
Query: 489 KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT- 547
+ + GG VLEPKKG + +IL D+ SLYP+I+ +N+C+TT+ + D +
Sbjct: 446 RYDMSSDLKGGEVLEPKKGLLENVLIL-DYKSLYPTIMMAHNLCYTTVVTKDRPDGEAIK 504
Query: 548 --TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL--LMQYDIRQKALKL 603
+ E++P +V GI+PS ++ L+ R + K M+ L+SD D Q A+K+
Sbjct: 505 PPSGGEFVPP-EVYRGIVPSILEDLLNQRGETKKRMR---LTSDKNEYRVLDATQLAIKI 560
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN------------------ 645
NS YG G+ +R ++ LA VT+ GR +LNT+ L+ N
Sbjct: 561 LLNSFYGYSGYARARLYSLTLANAVTSFGRSNILNTRDLINNDIGKIVLRDSAALFLEEA 620
Query: 646 ---------LNYEVIYGDTDSLMISCNVN---DYDSVFKIGNQIKSECN-KLYKQLELDI 692
++ V YGDTDS+ + C + V +GN++ + L +EL+
Sbjct: 621 GEISPQDRVIDLSVAYGDTDSVFVHCRSEGDLSLEDVSLVGNRLSQIVSASLPDPMELEF 680
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
+ + K LL+ KK+Y AL + + N ++KG++ VRRDW +L S V+ +L
Sbjct: 681 EAIAKRALLIAKKRY-ALWLFEPRNSGWENKIKVKGMETVRRDWCELTSITLNEVLKLVL 739
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDN 782
+ + EH++ + +D+ N
Sbjct: 740 ---------IKGDVDGAVEHVRNVVSDVRN 760
>gi|156844887|ref|XP_001645504.1| hypothetical protein Kpol_1004p20 [Vanderwaltozyma polyspora DSM
70294]
gi|156116168|gb|EDO17646.1| hypothetical protein Kpol_1004p20 [Vanderwaltozyma polyspora DSM
70294]
Length = 1096
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 170/323 (52%), Gaps = 36/323 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRML-----QDSDI 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ V+ L +D I
Sbjct: 586 YEGATVIEPIRGYYDIPIATLDFNSLYPSIMMAHNLCYTTLCNKETVQRLNLKKDEDYII 645
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 604
T +Y ++ GILP +++L+++R++ K +K ++L + RQ ALK++
Sbjct: 646 TPNGDYFVSTKLRHGILPIILRELIDARKRAKKDLKNETDPFKKNVL---NGRQLALKIS 702
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 655
ANS+YG G + +++ VTA GR++++ TK+ VE + V+YGDT
Sbjct: 703 ANSVYGFTGATVGKLPCLAISSSVTAFGRDMIMTTKNAVEEKYRISNGYKHDAVVVYGDT 762
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ +D ++G + + + L+K + L+ + Y LL+ KK+YA L ++
Sbjct: 763 DSVMVKFGTSDLKESMELGTEAAAFVSGLFKDPINLEFEKAYFPYLLINKKRYAGLYWTR 822
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
+ + KG+ VRRD L S V+ +IL +D + N ++K
Sbjct: 823 TEKYDKL---DQKGLASVRRDSCPLVSIVMNKVLKKIL---------IDRDVDNALAYVK 870
Query: 775 KIRTDLDNGFVPLTLLEITKQLT 797
+I +L + V ++ L I+K L
Sbjct: 871 QIIDNLLHNKVDISQLIISKTLA 893
>gi|367000613|ref|XP_003685042.1| hypothetical protein TPHA_0C04580 [Tetrapisispora phaffii CBS 4417]
gi|357523339|emb|CCE62608.1| hypothetical protein TPHA_0C04580 [Tetrapisispora phaffii CBS 4417]
Length = 1096
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 160/315 (50%), Gaps = 33/315 (10%)
Query: 481 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT----- 535
+T N G Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT
Sbjct: 571 DTLIPNMGSQGSDEQYEGATVIEPIRGYYDLPIATLDFNSLYPSIMMAHNLCYTTLCNRE 630
Query: 536 ----IPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSD 589
+ +++ +D IT +Y + GILP + +L+ +R++ K +K + D
Sbjct: 631 TVQRLDLKLNEDYIITPNNDYFVTTKKRHGILPIILNELISARKRAKNDLKNEKDPFKRD 690
Query: 590 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---- 645
+L + RQ ALK++ANS+YG G + +++ VTA GR++++ TK+ V+
Sbjct: 691 VL---NGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAFGRDMIMTTKNAVQEKYSI 747
Query: 646 -----LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYM 699
+ V+YGDTDS+M+ +D ++G + + + L+K + L+ + Y
Sbjct: 748 KNGYKNDAVVVYGDTDSVMVKFGTSDLGEAMELGTEAAAYVSSLFKDPINLEFEKAYFPY 807
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ---- 755
LL+ KK+YA L +K + + KG+ VRRD L S V+ IL E+
Sbjct: 808 LLINKKRYAGLYWTKTEKYDKL---DQKGLASVRRDSCPLVSIVMNKVLKMILIERNVDG 864
Query: 756 --SYTDYSLDDRLQN 768
+Y +D+ L N
Sbjct: 865 ALAYIKSVIDELLHN 879
>gi|340522830|gb|EGR53063.1| DNA polymerase delta, catalytic subunit [Trichoderma reesei QM6a]
Length = 1105
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 104/325 (32%), Positives = 165/325 (50%), Gaps = 38/325 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSD--I 546
Y G V+EP +G+YD I +DF SLYPSIIQ +N+C+TT+ P ++ +D D +
Sbjct: 578 YEGATVIEPTRGYYDVPIATLDFASLYPSIIQAHNLCYTTLLRPGDVERFKLKKDEDYIV 637
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLT 604
T + G+L +++L+ +R+Q K + Q +D + + RQ ALK++
Sbjct: 638 TPNGDMFVTATKRKGLLAQILEELLSARKQAKRELAQ---ETDPFKKAVLNGRQLALKVS 694
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + +A+ T+ GR+++ TK VE + +VIYGDT
Sbjct: 695 ANSVYGLTGATTGKLPCLAIASSTTSFGRQMIEKTKREVEEKYTIANGYTHDAQVIYGDT 754
Query: 656 DSLMISCNVNDYDSVFKIGNQI-KSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ D K+G + K K K ++L+ + VY LL+ KK+YA L ++
Sbjct: 755 DSVMVKFGTKDLAEAMKLGEEASKYVSAKFLKPIKLEFEKVYFPYLLINKKRYAGLYWTR 814
Query: 715 LSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
KM + KG++ VRRD LA + V+ IL +D +Q +++
Sbjct: 815 TEKYDKM----DTKGLETVRRDNCLLAQTVIEKVLRMIL---------IDRDVQGAQDYV 861
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTK 798
K DL + ++ L ITK LTK
Sbjct: 862 KSTIADLLQNKIDMSKLVITKALTK 886
>gi|324120764|dbj|BAJ78773.1| DNA polymerase delta catalytic subunit [Stenopsyche marmorata]
Length = 1000
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 194/409 (47%), Gaps = 60/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L+ L G+ + LL Y++P
Sbjct: 422 KLMCIINYMEMA----RVTGVPLACLLNRGQQIKVVSQLLRKAKTSKYIMP--------- 468
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-I 536
A +G Y G V++P KG+Y I +DF SLYPSI+ +N+C+TT +
Sbjct: 469 -------AYHSQGSDDQ-YEGATVIDPLKGYYSNPIATLDFASLYPSIMMAHNLCYTTLL 520
Query: 537 PVRMLQDSDI-------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNL 586
P M + +I T + V G+LP ++ L+ +R++ KA +K+ P
Sbjct: 521 PNHMKEKLNITDDQVTRTPSNNMFVKSTVRKGLLPEILESLLGARKKAKADLKEETDPFK 580
Query: 587 SSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
S L D RQ ALK++ANS+YG G + +++ VT+ GR ++ TK VE
Sbjct: 581 RSVL----DGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTSYGRSMIEQTKQEVEQR 636
Query: 645 -------NLNYEVIYGDTDSLMISCNVNDYDSVFKIG-NQIKSECNKLYKQLELDIDGVY 696
+ + VIYGDTDS+M++ + K+G N + +K K ++L+ + Y
Sbjct: 637 YTKANGYDEDAIVIYGDTDSVMVNFGTTSLEESMKLGRNAAEFVSSKFIKPIKLEFEKCY 696
Query: 697 KYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L +K KM C KG++ VRRD S L S + ++L
Sbjct: 697 FPYLLINKKRYAGLYFTKPDKYDKMDC----KGIETVRRDNSPLVSNLMSTCLQKVL--- 749
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D + E+ K+I DL + ++ L ITK+L+K+ K
Sbjct: 750 ------IDRDPKGAVEYAKQIIADLLCNRIDISQLVITKELSKSDYAAK 792
>gi|440493562|gb|ELQ76017.1| DNA polymerase delta, catalytic subunit [Trachipleistophora
hominis]
Length = 1386
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/264 (32%), Positives = 144/264 (54%), Gaps = 29/264 (10%)
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K +G +E + K Y G V+EP++G+YD+ I ++DF SLYPSII +
Sbjct: 700 KIFGLILREARKNNYVVPSVAVKDEGYMGAFVIEPERGYYDEPIAVLDFASLYPSIIIAH 759
Query: 530 NICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM-- 581
N+C++T+ + +D++ + Y + V GILP ++K+++ R++VK M
Sbjct: 760 NLCYSTMLLGTRHGIDKNKDAERSPTGSYFVKRDVRVGILPVILEKMLKKRKEVKEKMKN 819
Query: 582 -KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
K P + + L + RQ A K++ANS+YG G R ++ VT GRE+++ TK
Sbjct: 820 EKNPFMKTLL----NARQNAFKVSANSVYGFTGSAIGRLPCIDISQSVTGYGREMIIKTK 875
Query: 641 SLVENL---------NYEVIYGDTDSLMISCNVND--YDSVFKIGNQIK---SECNKLYK 686
++VE++ + VIYGDTDS+M+ +D D VF++ ++ SEC K
Sbjct: 876 NVVESVFCRSNGYDFDSHVIYGDTDSVMVRIKKDDLNVDFVFEVAKEMANKVSEC--FVK 933
Query: 687 QLELDIDGVYKYMLLLKKKKYAAL 710
++L+ + VY LL+ KK+YA +
Sbjct: 934 PVKLEFEKVYFPYLLMNKKRYAGV 957
>gi|240147858|gb|ACS45164.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 83/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMADPRESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL +T L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 DILQDTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKLLKELVNKQYKSLEI 118
>gi|21228106|ref|NP_634028.1| DNA polymerase delta catalytic subunit [Methanosarcina mazei Go1]
gi|20906547|gb|AAM31700.1| DNA polymerase delta catalytic subunit [Methanosarcina mazei Go1]
Length = 933
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 111/390 (28%), Positives = 186/390 (47%), Gaps = 63/390 (16%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS-YVLPDKQYGKNKKEGEETGEANKG 488
I + V G++L + GG++ E LLL F + +LP K G+E +
Sbjct: 404 IALAQVSGSLLQEIVDGGQTSMVETLLLREFGLRDRVILP--------KPGDEL---SAE 452
Query: 489 KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT- 547
+ + GG VLEPKKG + +IL D+ SLYP+I+ +N+C+TT+ + D +
Sbjct: 453 RYDMSSDLKGGEVLEPKKGLLENVLIL-DYKSLYPTIMMAHNLCYTTVVTKDRPDGEAIK 511
Query: 548 --TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL--LMQYDIRQKALKL 603
+ E++P +V GI+PS ++ L+ R + K M+ L+SD D Q A+K+
Sbjct: 512 PPSGGEFVPP-EVYRGIVPSILEDLLNQRGETKKRMR---LTSDKNEYRVLDATQLAIKI 567
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN------------------ 645
NS YG G+ +R ++ LA VT+ GR +LNT+ L+ N
Sbjct: 568 LLNSFYGYSGYARARLYSLTLANAVTSFGRSNILNTRDLINNDIGKIVLRDSAALFLEEA 627
Query: 646 ---------LNYEVIYGDTDSLMISCNVN---DYDSVFKIGNQIKSECN-KLYKQLELDI 692
++ V YGDTDS+ + C + V +GN++ + L +EL+
Sbjct: 628 GEISPQDRVIDLSVAYGDTDSVFVHCRSEGDLSLEDVSLVGNRLSQIVSASLPDPMELEF 687
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
+ + K LL+ KK+Y AL + + N ++KG++ VRRDW +L S V+ +L
Sbjct: 688 EAIAKRALLIAKKRY-ALWLFEPRNSGWENKIKVKGMETVRRDWCELTSITLNEVLKLVL 746
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDN 782
+ + EH++ + +D+ N
Sbjct: 747 ---------IKGDVDGAVEHVRNVVSDVRN 767
>gi|50308039|ref|XP_454020.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643155|emb|CAG99107.1| KLLA0E01607p [Kluyveromyces lactis]
Length = 1101
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 158/300 (52%), Gaps = 33/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP---------VRMLQDSDI 546
Y G V+EPK+G+YD I +DF+SLYPSI+ +N+C+TT+ +++ +D +
Sbjct: 585 YEGATVIEPKRGYYDVPIATLDFSSLYPSIMMAHNLCYTTLCDRATVQRLNLKLDEDYIV 644
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 604
T + +V G+LP +++L+ +R++ K +K D+L + RQ ALK++
Sbjct: 645 TPNNDIFVTSKVRRGVLPEILEELIGARKKAKFDLKNETDPFKRDVL---NGRQLALKIS 701
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 655
ANS+YG G + +++ VT+ GR ++ TK+ VEN + V+YGDT
Sbjct: 702 ANSVYGFTGATVGKLPCLAISSSVTSFGRTMIETTKNAVENKYCIKNGASHDAVVVYGDT 761
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ D + K+G + + + L+K ++L+ + VY LL+ KK+YA L
Sbjct: 762 DSVMVKFGTTDLEESMKLGAEAAAYVSSLFKDPIKLEFEKVYFPYLLINKKRYAGL---Y 818
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL------DEQSYTDYSLDDRLQN 768
+N K + KG+ VRRD L S V+ +IL + ++DD LQN
Sbjct: 819 WTNPKKYDKLDQKGLASVRRDSCPLVSIVMNKVLKKILIGRNVDGAMQFIRETIDDILQN 878
>gi|209882407|ref|XP_002142640.1| DNA polymerase family B [Cryptosporidium muris RN66]
gi|209558246|gb|EEA08291.1| DNA polymerase family B, putative [Cryptosporidium muris RN66]
Length = 1123
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/427 (28%), Positives = 200/427 (46%), Gaps = 61/427 (14%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+++M L + P I++ V G L L G+ + +L ++++P K
Sbjct: 543 LRLMKHLKLFPNIIEMARVTGTTLDILLSRGQQIKVTSQILRKCKSLNFIMPTL-----K 597
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ GE + Y G VLEP KGFY I +DF SLYPSI+ +NIC++T
Sbjct: 598 RSGESVEDQ----------YEGATVLEPVKGFYKDPISTLDFASLYPSIMIAHNICYST- 646
Query: 537 PVRMLQDSDITTLCE----------YLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQ 583
++ +D L + V GILP +++L+ +R++ + ++ K
Sbjct: 647 ---LVPSNDADHLSDDFKRKSPAGHTFVLSSVRKGILPLIVEELILARKKARKEMSVTKD 703
Query: 584 PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPN-SRFFAQPLAALVTAKGREILLNTKSL 642
P L S L D RQ ALK++ANS+YG G +F ++ +T+ GR ++ TK
Sbjct: 704 PVLLSIL----DGRQLALKISANSVYGYTGATTGGQFPCLEISTSITSYGRSMIDFTKME 759
Query: 643 VE---NL------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDI 692
VE N+ N VIYGDTDS+M+ +D +G + +E + ++ + L+
Sbjct: 760 VEKRYNIANGYKHNATVIYGDTDSVMVQFGTSDISEAMDLGLKAATEISDMFLSPIRLEF 819
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
+ VY LL+ KK+YA + N + + KG++ VRRD L + V+ +IL
Sbjct: 820 EKVYCPFLLMNKKRYAGV---LYKNSETYEKIDCKGIETVRRDNCLLVQQVADIVLKKIL 876
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRL 812
++ ++ E+ + I DL V L+LL ++K L K K + + L
Sbjct: 877 ---------VNKDVEGAKEYTRNIIADLLRNKVDLSLLVVSKSLGKDDYTAK--LAHVEL 925
Query: 813 SRNRRGR 819
++ R R
Sbjct: 926 AKKLRQR 932
>gi|395858290|ref|XP_003801504.1| PREDICTED: DNA polymerase delta catalytic subunit [Otolemur
garnettii]
Length = 1108
Score = 129 bits (323), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 120/413 (29%), Positives = 202/413 (48%), Gaps = 59/413 (14%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ L VL A+++ V G LS L G+ + LL + V+P
Sbjct: 514 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMREGLVMP- 572
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +
Sbjct: 573 ----VVKSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAH 615
Query: 530 NICFTTI--P-----VRMLQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
N+C+TT+ P + + +D I T E++ + V G+LP ++ L+ +R++ KA
Sbjct: 616 NLCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFV-KTSVRKGLLPQILENLLSARKRAKAE 674
Query: 581 MKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+ + +D L D RQ ALK++ANS+YG G + ++ VT GR+++
Sbjct: 675 LAK---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEK 731
Query: 639 TKSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-L 688
TK LVE + + +V+YGDTDS+M V+ +G + + + +
Sbjct: 732 TKQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPI 791
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKF 746
L+ + VY LL+ KK+YA L S + +M C KG++ VRRD L +
Sbjct: 792 RLEFEKVYFPYLLISKKRYAGLLFSSRAEAHDRMDC----KGLEAVRRDNCPLVANLVTA 847
Query: 747 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H +++ +DL + ++ L ITK+LT+A
Sbjct: 848 SLRRLL---------IDRDPEGAVAHAQEVISDLLCNRIDISQLVITKELTRA 891
>gi|330921129|ref|XP_003299297.1| hypothetical protein PTT_10256 [Pyrenophora teres f. teres 0-1]
gi|311327099|gb|EFQ92613.1| hypothetical protein PTT_10256 [Pyrenophora teres f. teres 0-1]
Length = 1115
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 117/404 (28%), Positives = 192/404 (47%), Gaps = 60/404 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGN-VLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
K+MC +N +A ++T V N +LSR G+ R L + ++PD
Sbjct: 524 KLMCLVNYTEMA-RVTGVPFNYILSR----GQQIRFISQLFRKALDHQLIVPDL------ 572
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+G Y G V+EPK+G+Y + +DF SLYPSI+Q +N+C+TT
Sbjct: 573 ----------PNQGDSSDQYEGATVIEPKRGYYRDPVATLDFASLYPSIMQAHNLCYTTW 622
Query: 537 -------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQP 584
++M +D D +T + + G+L +++++ +R++ K A P
Sbjct: 623 LDKQTVEKLKMKKDEDYIVTPHGDMFCTAKTRKGLLTEILEEVLSARKKAKRELATETDP 682
Query: 585 NLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+ L + RQ ALK+TANS+YG G N + +A+ T+ GR+++ TK+ VE
Sbjct: 683 FKKAVL----NGRQLALKVTANSVYGLTGATNGKLPCLAIASSTTSFGRQMIERTKAEVE 738
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ EVIYGDTDS+M+ ++ + K+G + + +K K ++L+ +
Sbjct: 739 AKYNIANGYTHDAEVIYGDTDSVMVKFGTSNLEEAMKLGEEAATYVTSKFLKPIKLEFEK 798
Query: 695 VYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
VY LL+ KK+YA L +N + KG++ VRRD +L Q + E
Sbjct: 799 VYFPYLLINKKRYAGLY---WTNPHKWDKMDTKGIETVRRDNCRLV---------QTVIE 846
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
S +D + +K+ DL V ++ L ITK LTK
Sbjct: 847 TSLRMLLIDQDPEGAQAFVKETIADLLQNKVDMSNLVITKALTK 890
>gi|425777959|gb|EKV16108.1| DNA polymerase [Penicillium digitatum Pd1]
gi|425780068|gb|EKV18089.1| DNA polymerase [Penicillium digitatum PHI26]
Length = 1104
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 113/405 (27%), Positives = 199/405 (49%), Gaps = 64/405 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P+
Sbjct: 520 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKAREQQLVIPN------ 567
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K + + Y G V+EPK+G+Y + +DF SLYPSIIQ +N+C+TT
Sbjct: 568 ------------SKPQDEQDYEGATVIEPKRGYYGVPVATLDFASLYPSIIQAHNLCYTT 615
Query: 536 I-------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ + + +D D +T + +V G+L +++L+ +R++ K ++
Sbjct: 616 LLNKSSVEKLNLKKDDDYIVTPNGDMFCTTKVRKGLLSQILEELLSARKRAK---RELAT 672
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 673 ETDSFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKQEVE 732
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDG 694
+ + EVIYGDTDS+M+ V + ++G + +K ++L+ +
Sbjct: 733 ARYTIANGYSHDAEVIYGDTDSVMVKFGVTELAEAMRLGQEAADFVSSKFIAPIKLEFEK 792
Query: 695 VYKYMLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L + + KM + KG++ VRRD + + V+++IL
Sbjct: 793 VYFPYLLINKKRYAGLYWTNPDKHDKM----DTKGIETVRRDNCLMVQNVIETVLNKIL- 847
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+D L +++K +DL + ++ L ITK L+K
Sbjct: 848 --------IDRDLDGAQDYVKATISDLLQNKIDMSKLVITKALSK 884
>gi|389860533|ref|YP_006362772.1| DNA polymerase family B [Thermogladius cellulolyticus 1633]
gi|388525436|gb|AFK50634.1| DNA polymerase family B [Thermogladius cellulolyticus 1633]
Length = 800
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 186/382 (48%), Gaps = 53/382 (13%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP A+Q++ V L + R E+ L++ + ++P+++ +KE E
Sbjct: 361 LPFAMQLSYVTRLPLDQVGAASVGNRLEWFLMYEAMKAGELIPNRE----EKEAE----- 411
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
Y G +VL+P +G +D +L DF+S+YP+++ +YN+ TI + D
Sbjct: 412 ---------PYKGAVVLQPVRGIHDNVAVL-DFSSMYPNLMIKYNVGPDTI--ERAGECD 459
Query: 546 ITTLCEYLPE-----HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
+ T PE + G + KL+E R+ +++ MK+ + D RQ+A
Sbjct: 460 VGT-HNIAPEVGHCFRREPPGFFKDVLTKLLELRKSIRSEMKKYKPDTVEYRILDERQRA 518
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
+K+ AN+ YG +G+ +R++ + A VTA GR + N E L +VIYGDTDS+ +
Sbjct: 519 IKILANATYGYMGWVGARWYCRECAEAVTAWGRATITNVIKYAEGLGLKVIYGDTDSIFV 578
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNGK 719
+ D + K ++ E LE+ ID +Y + + KK+YA L L +G+
Sbjct: 579 KYDKEKVDKLIK---YVEEELG-----LEIKIDKLYTRVFFTEAKKRYAGL----LEDGR 626
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
+ +I G + VR DW+++A E + + +L D L E+++ + +
Sbjct: 627 V----DIVGFEAVRGDWAEIAKEVQEEITEILLK---------DGDLNKAIEYVRSVVSQ 673
Query: 780 LDNGFVPLTLLEITKQLTKAPE 801
+ +G VP+ L I K LTK PE
Sbjct: 674 VKSGSVPVEKLVIWKTLTKRPE 695
>gi|195997435|ref|XP_002108586.1| hypothetical protein TRIADDRAFT_18979 [Trichoplax adhaerens]
gi|190589362|gb|EDV29384.1| hypothetical protein TRIADDRAFT_18979 [Trichoplax adhaerens]
Length = 1050
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/327 (29%), Positives = 171/327 (52%), Gaps = 43/327 (13%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLC----- 550
Y+G +V+EP +G+YD I +DF+SLYPSI+Q +N+C+TT +LQ ++ L
Sbjct: 530 YTGAIVIEPVRGYYDCPIATLDFSSLYPSIMQAHNLCYTT----LLQHHHLSNLSPDDYI 585
Query: 551 -----EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKALK 602
Y + + GILP ++ L+ +R++ K +K P L D RQ ALK
Sbjct: 586 KTPSGNYFVKKNLRAGILPKILQNLLSARKKAKFDLKNEKDPFKRKVL----DGRQLALK 641
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYG 653
++ANS+YG G + ++ VTA GR+++ ++ LVE + +VIYG
Sbjct: 642 ISANSVYGFTGAQVGKLPCLEVSQSVTAFGRQMIEKSRQLVEERYTIKNGYKFDAQVIYG 701
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSI 712
DTDS+M+ ++ + ++G + + + + ++L+ + VY LL+ KK+YA L
Sbjct: 702 DTDSVMVKFGLDTVEESMELGKEAANYISSHFPSPIKLEFEKVYFPYLLINKKRYAGLYF 761
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+K + + KG++ VRRD L + + ++L D + D ++ H
Sbjct: 762 TKADTYDKV---DCKGIETVRRDNCPLVANLINACLQKLL-----VDRNPDSAIK----H 809
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+++ +DL + ++ L ITK+LT++
Sbjct: 810 VQQTISDLLCNRIDISQLIITKELTRS 836
>gi|194873189|ref|XP_001973157.1| GG13508 [Drosophila erecta]
gi|190654940|gb|EDV52183.1| GG13508 [Drosophila erecta]
Length = 1092
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 41/334 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----------RMLQDSD 545
Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ + LQD
Sbjct: 566 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTREKLREQENLQDDQ 625
Query: 546 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 601
+ T Y + +V G+LP ++ L+ +R++ K +K + +D + D RQ AL
Sbjct: 626 VERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK---VETDPFKRKVLDGRQLAL 682
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIY 652
K++ANS+YG G + ++ VTA GR ++ TK+ VE+ N VIY
Sbjct: 683 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYSQANGYENNAVVIY 742
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M++ V + ++G + +K ++L+ + VY LL+ KK+YA L
Sbjct: 743 GDTDSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLY 802
Query: 712 ISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
++ + KM C KG++ VRRD S L + + ++L E+ D ++
Sbjct: 803 FTRPDAYDKMDC----KGIETVRRDNSPLVANLMNSCLQKLLIERD-PDGAV-------- 849
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++K++ DL + ++ L ITK+L K K
Sbjct: 850 AYVKQVIADLLCNRIDISHLVITKELAKTDYAAK 883
>gi|1706513|sp|P52025.1|DPOL_METVO RecName: Full=DNA polymerase
gi|495654|gb|AAA72443.1| DNA polymerase [Methanococcus voltae]
Length = 824
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 198/424 (46%), Gaps = 76/424 (17%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL I + + L T S+ EFLLL E++ + P++ + +E
Sbjct: 372 LPLEIMFSRIVNQPLYDTSRMNSSQMVEFLLLKRSFEQNMISPNRPSSSSYRE------- 424
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R K +Y GG V EP KG + I+ +DF SLYPSI+ +NI S
Sbjct: 425 -----RAKFSYEGGYVREPLKGIQED-IVSLDFMSLYPSILISHNI------------SP 466
Query: 546 ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK---QPNLSSDLLMQYDIRQKALK 602
T + E ++ GI+P + +L+ R+ +K L+K Q N + + + QK++K
Sbjct: 467 ETVIYEEKERENMELGIIPKTLNELLSRRKHIKMLLKDKIQKNEFDEEYSRLEHEQKSIK 526
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC 662
+ ANS YG L FP +R+++ A +VT GR+ + T E ++VIY DTD
Sbjct: 527 VLANSHYGYLAFPMARWYSDKCAEMVTGLGRKYIQETIEKAEEFGFKVIYADTDGFYAKW 586
Query: 663 NVNDYDSV-----------FKIGNQ---------------IKSECNKLYKQLELDIDGVY 696
DYD + K+ N +K +L + +EL+ +G +
Sbjct: 587 ---DYDKLQKGKKEENDKSDKLSNLPKLSKEELIILTKKFLKGINEELPEGMELEFEGHF 643
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
K L + KKKYA + +G ++ +KG++VVRRDWS +A + + VI +L++
Sbjct: 644 KRGLFVTKKKYALIE----DDGHIV----VKGLEVVRRDWSNIAKDTQQAVIRALLED-- 693
Query: 757 YTDYSLDDR-LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRN 815
D +L + ++N +++KK D ++ L I QLTK E K I +++
Sbjct: 694 -GDVNLAKKIIKNTIDNLKKGNIDKND-------LLIHTQLTKNIEEYKSTAPHIEVAKK 745
Query: 816 RRGR 819
+ R
Sbjct: 746 IKQR 749
>gi|123496446|ref|XP_001326973.1| polymerase zeta subunit [Trichomonas vaginalis G3]
gi|121909895|gb|EAY14750.1| polymerase zeta subunit, putative [Trichomonas vaginalis G3]
Length = 1045
Score = 128 bits (322), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 100/318 (31%), Positives = 164/318 (51%), Gaps = 31/318 (9%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY 552
Y G V+EP G+Y I +DFNSLYPSI+ +NIC++T+ P +Q C +
Sbjct: 519 YQGATVIEPSTGYYTTPIPTLDFNSLYPSIMIGHNICYSTLMTKPDPNVQYEKSPNHC-F 577
Query: 553 LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKALKLTANSMYG 610
+H G+LP +K+L+ +R+ K LM++ ++D + + +D RQ ALK++ANS+YG
Sbjct: 578 FAKHDEFPGVLPEILKELLAARKATKKLMEE---ATDPMQKKVFDKRQLALKISANSVYG 634
Query: 611 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIYGDTDSLMIS 661
G + ++ VTA GR ++ TK LVEN + VIYGDTDS+M++
Sbjct: 635 FTGATVGKLPCLQISESVTAYGRSMIEMTKELVENKYNKQNGYSDDAHVIYGDTDSVMVN 694
Query: 662 CNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
+ K G + + + + + +D + YK LL+ KK YA L +
Sbjct: 695 FGNITLEEAIKRGKEAANYVSDHFPPPIHIDFEKAYKPYLLISKKHYAGLLWTNHIKYDK 754
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
I + KG++ VRRD +L + V++ +L ++ + +KKI +DL
Sbjct: 755 I---DAKGIEAVRRDNCRLVQGLVQKVLTLLLVKEDPGSAKV---------FVKKIVSDL 802
Query: 781 DNGFVPLTLLEITKQLTK 798
+ + L+ L I+K L+K
Sbjct: 803 VSDHIDLSFLVISKGLSK 820
>gi|171693865|ref|XP_001911857.1| hypothetical protein [Podospora anserina S mat+]
gi|170946881|emb|CAP73685.1| unnamed protein product [Podospora anserina S mat+]
Length = 1108
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 165/326 (50%), Gaps = 40/326 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR-------MLQDSD--I 546
Y G V+EP +G+YD I +DF SLYPSIIQ +N+C+TT+ + +++D D +
Sbjct: 581 YEGATVIEPTRGYYDVPIATLDFASLYPSIIQAHNLCYTTLIKKKDIERWSLVKDEDYIV 640
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + + G+L +++L+ +R++ K A P + L + RQ ALK+
Sbjct: 641 TPNGDMFVTTKKRKGLLAQILEELLSARKEAKRELAAETDPFKKAVL----NGRQLALKI 696
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G N + +A+ TA GR+++ TK VE + + +VIYGD
Sbjct: 697 SANSVYGLTGATNGKLPCLEIASSTTAFGRQMIERTKHEVEERYCIKNGYSHDAQVIYGD 756
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ + K+G + +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 757 TDSVMVKFGTKELAEAMKLGEDAANYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT 816
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
K KM + KG++ VRRD L + V+ IL +D + E+
Sbjct: 817 KPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDRDVPGAQEY 863
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K DL V ++ L ITK LTK
Sbjct: 864 VKDTIADLLQNRVDMSKLVITKALTK 889
>gi|393226323|gb|EJD34100.1| putative delta DNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 961
Score = 128 bits (322), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 168/327 (51%), Gaps = 42/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSDI-- 546
Y G V+ P G+Y I +DF+S+YPSI+ +NIC+TT+ +R++ D D
Sbjct: 439 YEGATVIPPTTGYYKDPIATLDFSSMYPSIMIAHNICYTTMINRATISRLRLVLDVDYKQ 498
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
T + G+LP ++ L+ +R++VKA +K +D D RQ ALK++
Sbjct: 499 TPQGTFFVNPTRRKGVLPIILEHLLSARKRVKADLKN---ETDPFKRAVLDGRQLALKIS 555
Query: 605 ANSMYGCLGFPNSRFFAQP---LAALVTAKGREILLNTKSLVEN---------LNYEVIY 652
ANS+Y GFP + F P +++ TA GRE++ TKS+VE+ + VIY
Sbjct: 556 ANSVY---GFPGASFGHLPCTDISSTTTAYGREMIAKTKSVVEDHYRIENGFEHDARVIY 612
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M+ +D + ++G + + ++L+ + VY LL+ KK+YA L
Sbjct: 613 GDTDSVMVDFGPSDVATCMRLGAEAAHLVTTHFVDPVKLEFEKVYWPYLLVNKKRYAGLY 672
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+K + + KG++ VRRD LASE V++++L E+ +
Sbjct: 673 WTKPDKYDKL---DAKGLESVRRDNCCLASETMDKVLNKMLVERD---------PEGALA 720
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTK 798
++KKI +L + L+ L ITK L K
Sbjct: 721 YVKKIVNNLLQDRIDLSQLVITKTLAK 747
>gi|156363873|ref|XP_001626264.1| predicted protein [Nematostella vectensis]
gi|156213134|gb|EDO34164.1| predicted protein [Nematostella vectensis]
Length = 209
Score = 128 bits (322), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/97 (56%), Positives = 72/97 (74%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
ML+LATF PT+D G +D G+ ++ ++D D VG YLV++ I GKG K+L AG+GW+
Sbjct: 50 MLVLATFFPTSDILPGSIDYIGEFLRSTVDFADLVGLYLVMTKIAGKGELKVLVAGLGWS 109
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AE+I+TR L LWVGARG EFDWKY+Q S D+NI LI
Sbjct: 110 TAELIMTRLLPLWVGARGVEFDWKYMQMSFDANISLI 146
>gi|156355089|ref|XP_001623507.1| predicted protein [Nematostella vectensis]
gi|156210215|gb|EDO31407.1| predicted protein [Nematostella vectensis]
Length = 230
Score = 128 bits (322), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/97 (56%), Positives = 72/97 (74%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
ML+LATF PT+D G +D G+ ++ ++D D VG YLV++ I GKG K+L AG+GW+
Sbjct: 50 MLVLATFFPTSDILPGSIDYIGEFLRSTVDFADLVGLYLVMTKIAGKGELKVLVAGLGWS 109
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AE+I+TR L LWVGARG EFDWKY+Q S D+NI LI
Sbjct: 110 TAELIMTRLLPLWVGARGVEFDWKYMQMSFDANISLI 146
>gi|305662963|ref|YP_003859251.1| replicative DNA polymerase I [Ignisphaera aggregans DSM 17230]
gi|304377532|gb|ADM27371.1| replicative DNA polymerase I [Ignisphaera aggregans DSM 17230]
Length = 801
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/384 (29%), Positives = 192/384 (50%), Gaps = 56/384 (14%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP AIQ+++V G L + R E+ L+ + + ++P N+ E
Sbjct: 364 ILPFAIQLSSVTGIPLDQVGTASVGFRLEWFLIRIAYMRDELVP------NRIE------ 411
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 544
R+ Y G +VLEPKKG ++ I ++DF+++YPSI+ +YNI P +++D
Sbjct: 412 ------REYEPYRGAIVLEPKKGVHED-IAVLDFSAMYPSIMMKYNIG----PDTLVKDP 460
Query: 545 DIT--TLCEYLPEHQVDTGILPSEIKK-----LVESRRQVKALMKQPNLSSDLLMQYDIR 597
+I C PE PS K LV++R+ V+ +K+ ++ S D R
Sbjct: 461 EICKEDKCFEAPETGYKFVKEPSAFFKIALEILVKARKIVREQLKKYSVDSIEYRVLDAR 520
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 657
Q+ALK+ AN+ YG +G+ +R++ + A VT GRE + + NL VIYGDTDS
Sbjct: 521 QRALKILANACYGYMGWVGARWYCRECAEAVTDFGRETIRKAIDIARNLGLAVIYGDTDS 580
Query: 658 LMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLS 716
L + YD KI IK+ + L LE+ ID +Y+ + + KK+Y L+
Sbjct: 581 LFVK-----YDKE-KIDKLIKTVEDVL--GLEIKIDKIYRRVFFTEAKKRYIGLT----D 628
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR--LQNIHEHMK 774
+G++ ++ G + VR DW+++A E + +L ++D + ++ + ++
Sbjct: 629 DGRI----DVVGFEAVRGDWAEIAKELQEKTADIVLK-------TMDPKKAVEFVRNEIE 677
Query: 775 KIRTDLDNGFVPLTLLEITKQLTK 798
K+R + G +P+ I K +TK
Sbjct: 678 KLRKGVSEGSIPIDGFIIWKTITK 701
>gi|240147862|gb|ACS45166.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM+ P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T KGR
Sbjct: 3 RKNVKKLMEDPRESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITTKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
EIL +T L E + EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 EILQDTVDLAEKESMEVIYGDTDSIMINTNTSEMQKASEIGKSLKELVNKQYKSLEI 118
>gi|195477860|ref|XP_002086418.1| GE23127 [Drosophila yakuba]
gi|194186208|gb|EDW99819.1| GE23127 [Drosophila yakuba]
Length = 1092
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 41/334 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----------RMLQDSD 545
Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ + LQD
Sbjct: 566 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTREKLREQENLQDDQ 625
Query: 546 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 601
+ T Y + +V G+LP ++ L+ +R++ K +K + +D + D RQ AL
Sbjct: 626 VERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK---VETDPFKRKVLDGRQLAL 682
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIY 652
K++ANS+YG G + ++ VTA GR ++ TK+ VE+ N VIY
Sbjct: 683 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIY 742
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M++ V + ++G + +K ++L+ + VY LL+ KK+YA L
Sbjct: 743 GDTDSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLY 802
Query: 712 ISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
++ + KM C KG++ VRRD S L + + ++L E+ D ++
Sbjct: 803 FTRPDTYDKMDC----KGIETVRRDNSPLVANLMNSCLQKLLIERD-PDGAV-------- 849
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++K++ DL + ++ L ITK+L K K
Sbjct: 850 AYVKQVIADLLCNRIDISHLVITKELAKTDYAAK 883
>gi|24664937|ref|NP_524099.2| DNA-polymerase-delta [Drosophila melanogaster]
gi|13124718|sp|P54358.2|DPOD1_DROME RecName: Full=DNA polymerase delta catalytic subunit
gi|7294203|gb|AAF49555.1| DNA-polymerase-delta [Drosophila melanogaster]
gi|21064603|gb|AAM29531.1| RE60511p [Drosophila melanogaster]
Length = 1092
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 41/334 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----------RMLQDSD 545
Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ + LQD
Sbjct: 566 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTREKLRQQENLQDDQ 625
Query: 546 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 601
+ T Y + +V G+LP ++ L+ +R++ K +K + +D + D RQ AL
Sbjct: 626 VERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK---VETDPFKRKVLDGRQLAL 682
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIY 652
K++ANS+YG G + ++ VTA GR ++ TK+ VE+ N VIY
Sbjct: 683 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIY 742
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M++ V + ++G + +K ++L+ + VY LL+ KK+YA L
Sbjct: 743 GDTDSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLY 802
Query: 712 ISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
++ + KM C KG++ VRRD S L + + ++L E+ D ++
Sbjct: 803 FTRPDTYDKMDC----KGIETVRRDNSPLVANLMNSCLQKLLIERD-PDGAV-------- 849
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++K++ DL + ++ L ITK+L K K
Sbjct: 850 AYVKQVIADLLCNRIDISHLVITKELAKTDYAAK 883
>gi|365983526|ref|XP_003668596.1| hypothetical protein NDAI_0B03180 [Naumovozyma dairenensis CBS 421]
gi|343767363|emb|CCD23353.1| hypothetical protein NDAI_0B03180 [Naumovozyma dairenensis CBS 421]
Length = 1107
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 159/300 (53%), Gaps = 33/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSD--I 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ +++ +D + I
Sbjct: 597 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLKLKKDEEYII 656
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 604
+ +Y +V GILP + +L+++R++ K +K D+L + RQ ALK++
Sbjct: 657 SPNGDYFVTDKVRRGILPIILDELIQARKRAKKDLKNETDPFKRDVL---NGRQLALKIS 713
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-----NLNYE----VIYGDT 655
ANS+YG G + +++ VTA GR++++ TK+ VE N Y V+YGDT
Sbjct: 714 ANSVYGFTGATVGKLPCLAISSSVTAFGRDMIMTTKNAVEEKYTKNKGYADDAIVVYGDT 773
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ D ++G + + + L+K + L+ + Y LL+ KK+YA L
Sbjct: 774 DSVMVKFGTTDLKEAMRLGTEAAAFVSTLFKHPINLEFEKCYFPYLLINKKRYAGL---Y 830
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS------YTDYSLDDRLQN 768
+N + KG+ VRRD L S V+ +IL E++ + +++D L N
Sbjct: 831 WTNPDKFDRLDQKGLASVRRDSCSLVSIVMNKVLKKILIERNVPSALDFVKATINDILHN 890
>gi|1027513|emb|CAA61369.1| DNA polymerase delta [Drosophila melanogaster]
Length = 1092
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 41/334 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----------RMLQDSD 545
Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ + LQD
Sbjct: 566 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTREKLRQQENLQDDQ 625
Query: 546 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 601
+ T Y + +V G+LP ++ L+ +R++ K +K + +D + D RQ AL
Sbjct: 626 VERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK---VETDPFKRKVLDGRQLAL 682
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIY 652
K++ANS+YG G + ++ VTA GR ++ TK+ VE+ N VIY
Sbjct: 683 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIY 742
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M++ V + ++G + +K ++L+ + VY LL+ KK+YA L
Sbjct: 743 GDTDSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLY 802
Query: 712 ISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
++ + KM C KG++ VRRD S L + + ++L E+ D ++
Sbjct: 803 FTRPDTYDKMDC----KGIETVRRDNSPLVANLMNSCLQKLLIERD-PDGAV-------- 849
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++K++ DL + ++ L ITK+L K K
Sbjct: 850 AYVKQVIADLLCNRIDISHLVITKELAKTDYAAK 883
>gi|149757884|ref|XP_001493912.1| PREDICTED: DNA polymerase delta catalytic subunit [Equus caballus]
Length = 1107
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 197/406 (48%), Gaps = 58/406 (14%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
++++ L VL A+++ V G LS L G+ + LL + V+P K
Sbjct: 520 LRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMREGLVMP-----VVK 574
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 575 TEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTL 621
Query: 537 --P-----VRMLQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLS 587
P + + +D I T E++ + V G+LP ++ L+ +R++ KA + +
Sbjct: 622 LRPGAAQKLGLTEDQFIKTPTGDEFV-KTSVRKGLLPQILENLLSARKRAKAELAK---E 677
Query: 588 SDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE- 644
+D L D RQ ALK++ANS+YG G + ++ VT GR+++ TK LVE
Sbjct: 678 TDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIERTKQLVES 737
Query: 645 --------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGV 695
+ + +V+YGDTDS+M V+ +G + + + + L+ + V
Sbjct: 738 KYTTENGYSASAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKV 797
Query: 696 YKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
Y LL+ KK+YA L S + +M C KG++ VRRD L + + ++L
Sbjct: 798 YFPYLLISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL- 852
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+D H +++ +DL + ++ L ITK+LT+A
Sbjct: 853 --------IDRDPNGAVAHAQEVISDLLCNRIDISQLVITKELTRA 890
>gi|240147820|gb|ACS45146.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 82/119 (68%), Gaps = 1/119 (0%)
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
E R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T K
Sbjct: 1 ERRKNVKKLMADPKESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITTK 59
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
GREIL +T L E + EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 60 GREILQDTVDLAEKESMEVIYGDTDSIMINTNTSEMQKASEIGKLLKELVNKQYKSLEI 118
>gi|7416107|dbj|BAA93703.1| DNA polymerase B3 [Sulfurisphaera ohwakuensis]
Length = 781
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 96/330 (29%), Positives = 174/330 (52%), Gaps = 44/330 (13%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
+P I++T + G L + M R E+LL+ ++ + ++P+K+
Sbjct: 357 IPFGIELTRISGLPLDQLSMASVGHRVEWLLMREAYKYNELIPNKE-------------- 402
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R+ +Y GGLV+ P G +++ + ++DF+S+YPSI+ +YNI T+ ++
Sbjct: 403 ----EREYESYEGGLVISPLPGIHEE-VYVLDFSSMYPSIMIKYNIGPDTLVKGECENCW 457
Query: 546 ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 605
++ + + G+ + ++KL++ R++VK LM++ D + D RQ+ALK+ A
Sbjct: 458 VSPVGHKFRKEP--PGLYKNVLEKLIQERKEVKKLMEKTIDEYDKRVL-DARQRALKVMA 514
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN 665
N+ YG +G+ +R++++ A VTA GR+I+ ++ + + + VIYGDTDS+ +
Sbjct: 515 NAFYGYMGWLGARWYSKEGAEAVTAWGRQIISDSAKIAKEKGFTVIYGDTDSIFV----- 569
Query: 666 DYDSVFKIGNQIKSECNKLYKQ--LELDIDGVYKYMLLLK-KKKYAALSISKLSNGKMIC 722
K G I S ++ + LE+ ID +YK + + KK+YA L+ +GK+
Sbjct: 570 ------KGGGDINSLITEISSKFGLEIKIDKIYKRVFFTENKKRYAGLT----EDGKI-- 617
Query: 723 SQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
+I G + VR DW LA + VI IL
Sbjct: 618 --DIVGFEAVRGDWCDLAKQVQTNVIELIL 645
>gi|190344317|gb|EDK35969.2| hypothetical protein PGUG_00067 [Meyerozyma guilliermondii ATCC
6260]
Length = 1075
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 173/331 (52%), Gaps = 39/331 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IPVRMLQ--DSDIT 547
Y G V+EP +G+YD I +DF+SLYPSI+ +N+C+TT I L D +T
Sbjct: 555 YEGATVIEPVRGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLSKNSIAAFNLSKDDYTLT 614
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 605
+Y + GILP+ + +L+ +R++ K +K D+L + RQ ALK++A
Sbjct: 615 PNGDYFVKEHKRKGILPTILHELISARKKAKVDLKNETDPFRKDVL---NGRQLALKISA 671
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + +++ VTA GR ++ TK+ V+ + + +VIYGDTD
Sbjct: 672 NSVYGFTGATIGKLPCLAISSSVTAFGRVMIEETKNEVQSRYTTENGYDYDAQVIYGDTD 731
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D ++ K+G + + ++ +K ++L+ + VY LL+ KK+YA L ++
Sbjct: 732 SVMVKFGHQDIETCMKLGEEAANYVSQKFKNPIKLEFEKVYFPYLLINKKRYAGLYWTRP 791
Query: 716 SN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR-LQNIHEHM 773
KM + KG++ VRRD +L VI+++L +Y L++R + +
Sbjct: 792 EKFDKM----DTKGIETVRRDNCRLVQN----VITKVL------EYILEERNVDKAERFV 837
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
K+ DL V L+ L ITK +K K
Sbjct: 838 KQTIADLLQNRVDLSQLVITKAYSKHEYAAK 868
>gi|410258776|gb|JAA17355.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa [Pan
troglodytes]
gi|410333287|gb|JAA35590.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa [Pan
troglodytes]
Length = 1107
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 199/412 (48%), Gaps = 57/412 (13%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ L VL A+++ V G LS L G+ + LL + ++P
Sbjct: 513 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMP- 571
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +
Sbjct: 572 ----VVKSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAH 614
Query: 530 NICFTTI--P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
N+C+TT+ P + + +D I T + + V G+LP ++ L+ +R++ KA +
Sbjct: 615 NLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAEL 674
Query: 582 KQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
+ +D L D RQ ALK++ANS+YG G + ++ VT GR+++ T
Sbjct: 675 AK---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKT 731
Query: 640 KSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LE 689
K LVE + + +V+YGDTDS+M V+ +G + + + +
Sbjct: 732 KQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIR 791
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFV 747
L+ + VY LL+ KK+YA L S + +M C KG++ VRRD L +
Sbjct: 792 LEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTAS 847
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H + + +DL + ++ L ITK+LT+A
Sbjct: 848 LRRLL---------IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRA 890
>gi|325090528|gb|EGC43838.1| DNA polymerase subunit delta large [Ajellomyces capsulatus H88]
Length = 1111
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 190/381 (49%), Gaps = 60/381 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P+ +N
Sbjct: 528 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQQLVIPNL---RN 578
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ E+ Y G V+EP + FYD I +DF SLYPSIIQ +N+C+TT
Sbjct: 579 ESTSEQ--------------YEGATVIEPIRDFYDVPIATLDFASLYPSIIQAHNLCYTT 624
Query: 536 IPVRMLQDSD---------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ + D+ +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 625 LLKKSTIDAHQMKEGEDYIVTPNGDRFCTSKVRKGLLTQILEELLGARKRAK---KELAV 681
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 682 ETDPFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKEEVE 741
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ + +V+YGDTDS+M+ + D K+G + +K ++L+ +
Sbjct: 742 AKYTIANGYSHDAKVVYGDTDSVMVKFGMKDLAEAMKLGQEAADYVSSKFINPIKLEFEK 801
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L ++ N KM + KG++ VRRD ++ + V+ +IL
Sbjct: 802 VYFPYLLINKKRYAGLYWTRPDNYDKM----DTKGIETVRRDNCRMVQTVIETVLRKILI 857
Query: 754 E------QSYTDYSLDDRLQN 768
+ QSY ++ D LQN
Sbjct: 858 DRDVDGAQSYVKDTISDLLQN 878
>gi|348666766|gb|EGZ06593.1| hypothetical protein PHYSODRAFT_532354 [Phytophthora sojae]
Length = 1050
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 124/440 (28%), Positives = 207/440 (47%), Gaps = 69/440 (15%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ +L+ L I++ V G + + G+ + +LL + S V+P
Sbjct: 455 LKDAYLPLRLLDKLSYLVNFIEMARVSGVPIDFLIERGQQIKVFSMLLRKCKDASLVVPT 514
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
+N ++ A Y G V+EPKK FY I +DF SLYPSI+Q +
Sbjct: 515 LPRSQNNED---------------AGYEGATVIEPKKAFYSVPIATLDFASLYPSIMQAF 559
Query: 530 NICFTTIPVRMLQDSDITTLC----EYLPEHQVDT------GILPSEIKKLVESRRQVKA 579
N+C++T ++ D+ L E P + GILP +++++ +R+Q K
Sbjct: 560 NLCYST----LVAPGDVDKLAPGDYERSPSGDIFVTSKKKKGILPLILEEVLAARKQAKW 615
Query: 580 LMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
M N ++D + + RQ ALK++ANS+YG G + P+A+ TA GR++L
Sbjct: 616 DM---NAATDPMEKAVQNGRQLALKVSANSVYGFTGAIVGQMPCIPIASSTTAYGRQLLF 672
Query: 638 NTKSLVENL---------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ- 687
T+ VE + + +V+YGDTDS+MI V+ + + + + ++
Sbjct: 673 RTREEVERIYTIANGYKADAQVVYGDTDSVMIKFGVDTVEEAMPLAEEAAKRVSDIFPNP 732
Query: 688 LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFV 747
++L+ + VY LL+ KK+YA L +K + S KG++ VRRD L + V
Sbjct: 733 IKLEFEKVYFPYLLMNKKRYAGLLWTKPEKYDKLDS---KGLETVRRDNCLLVRRMVESV 789
Query: 748 ISQILDEQ------SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ +IL + SYT + D LQN R D ++LL ITK L K +
Sbjct: 790 LRKILINRDVPGAISYTKNVISDLLQN--------RID-------ISLLVITKGLKKTVD 834
Query: 802 GGKVCITQIRLSRNRRGRRR 821
+ Q R R+R
Sbjct: 835 QDDYKVKQAHTELAERMRKR 854
>gi|181622|gb|AAA35768.1| DNA polymerase delta [Homo sapiens]
Length = 1107
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 199/412 (48%), Gaps = 57/412 (13%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ L VL A+++ V G LS L G+ + LL + ++P
Sbjct: 513 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMP- 571
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +
Sbjct: 572 ----VVKSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAH 614
Query: 530 NICFTTI--P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
N+C+TT+ P + + +D I T + + V G+LP ++ L+ +R++ KA +
Sbjct: 615 NLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAEL 674
Query: 582 KQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
+ +D L D RQ ALK++ANS+YG G + ++ VT GR+++ T
Sbjct: 675 AK---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKT 731
Query: 640 KSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LE 689
K LVE + + +V+YGDTDS+M V+ +G + + + +
Sbjct: 732 KQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGGEAADWVSGHFPSPIR 791
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFV 747
L+ + VY LL+ KK+YA L S + +M C KG++ VRRD L +
Sbjct: 792 LEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTAS 847
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H + + +DL + ++ L ITK+LT+A
Sbjct: 848 LRRLL---------IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRA 890
>gi|397485032|ref|XP_003813667.1| PREDICTED: DNA polymerase delta catalytic subunit [Pan paniscus]
Length = 1107
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 199/412 (48%), Gaps = 57/412 (13%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ L VL A+++ V G LS L G+ + LL + ++P
Sbjct: 513 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMP- 571
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +
Sbjct: 572 ----VVKSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAH 614
Query: 530 NICFTTI--P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
N+C+TT+ P + + +D I T + + V G+LP ++ L+ +R++ KA +
Sbjct: 615 NLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAEL 674
Query: 582 KQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
+ +D L D RQ ALK++ANS+YG G + ++ VT GR+++ T
Sbjct: 675 AK---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKT 731
Query: 640 KSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LE 689
K LVE + + +V+YGDTDS+M V+ +G + + + +
Sbjct: 732 KQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIR 791
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFV 747
L+ + VY LL+ KK+YA L S + +M C KG++ VRRD L +
Sbjct: 792 LEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTAS 847
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H + + +DL + ++ L ITK+LT+A
Sbjct: 848 LRRLL---------IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRA 890
>gi|379003208|ref|YP_005258880.1| DNA polymerase (pol2) [Pyrobaculum oguniense TE7]
gi|375158661|gb|AFA38273.1| DNA polymerase (pol2) [Pyrobaculum oguniense TE7]
Length = 786
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 58/379 (15%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP IQ+++V G L + R E++LL + V P N++E
Sbjct: 350 LLPFLIQLSSVSGLPLDQVAAASVGNRVEWMLLRYAYGLGEVAP------NREE------ 397
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ-- 542
R+ Y G +VLEPK G Y ++L DF+S+YP+++ YN+ P L+
Sbjct: 398 ------REYEPYKGAIVLEPKPGLYSDVLVL-DFSSMYPNVMMRYNLS----PDTYLEPG 446
Query: 543 DSDITTLCEYLPE--HQV---DTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYD 595
+ D PE H+ G +P +++LV RR V+ MK QP+ ++ D
Sbjct: 447 EPDPPEGVYVAPEVGHRFRKEPPGFIPQVLRRLVALRRAVREEMKKYQPDTPEYRVL--D 504
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDT 655
RQKALK+ AN+MYG G+ +R++ + +A VTA R IL + L VIYGDT
Sbjct: 505 ERQKALKIMANAMYGYTGWVGARWYKKEVAESVTAFARAILKDVIDYARRLGIVVIYGDT 564
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ--LELDIDGVYKYMLLLK-KKKYAALSI 712
DSL + K G ++ + ++ +E+ +D Y+ +L + KK+YA L
Sbjct: 565 DSLFV-----------KKGGDLEKLARYVDEKYGIEIKVDKDYEKVLFTEAKKRYAGL-- 611
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY--SLDDRLQNIH 770
L +G++ +I G +VVR DWS+LA E VI IL + ++ + ++++
Sbjct: 612 --LRDGRI----DIVGFEVVRGDWSELAKEVQLKVIELILKARDLSEARQRVIKYVKDVI 665
Query: 771 EHMKKIRTDLDNGFVPLTL 789
E +K + DLD+ + TL
Sbjct: 666 ERLKSGKFDLDDLIIWKTL 684
>gi|239607450|gb|EEQ84437.1| DNA polymerase delta subunit [Ajellomyces dermatitidis ER-3]
Length = 1106
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 190/381 (49%), Gaps = 60/381 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +FL L E+ V+P+ +N
Sbjct: 523 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFLSQLFRKALEQQLVIPNL---RN 573
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ E+ Y G V+EP + +YD I +DF SLYPSIIQ +N+C+TT
Sbjct: 574 ESTSEQ--------------YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTT 619
Query: 536 IPVRMLQDSD---------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ + D+ +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 620 LLKKSTIDTHQMKEGEDYIVTPNGDRFCTSKVRKGLLTQILEELLGARKRAK---KELAV 676
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G R P+A+ T+ GR+++ TK VE
Sbjct: 677 ETDPFKKAVLNGRQLALKISANSVYGLTGATVGRLPCLPIASSTTSYGRQMIEKTKEEVE 736
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDG 694
+ + +V+YGDTDS+M+ + D K+G + + K K ++L+ +
Sbjct: 737 AKFTIANGYSHDAKVVYGDTDSVMVKFGMQDLAEAMKLGREAADFVSAKFIKPIKLEFEK 796
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L ++ KM + KG++ VRRD ++ + V+ +IL
Sbjct: 797 VYFPYLLINKKRYAGLYWTRPDKYDKM----DTKGIETVRRDNCRMVQTVIETVLRKILI 852
Query: 754 E------QSYTDYSLDDRLQN 768
+ QSY ++ D LQN
Sbjct: 853 DRDVGAAQSYVKDTISDLLQN 873
>gi|146421489|ref|XP_001486690.1| hypothetical protein PGUG_00067 [Meyerozyma guilliermondii ATCC
6260]
Length = 1075
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/331 (31%), Positives = 173/331 (52%), Gaps = 39/331 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IPVRMLQ--DSDIT 547
Y G V+EP +G+YD I +DF+SLYPSI+ +N+C+TT I L D +T
Sbjct: 555 YEGATVIEPVRGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLSKNSIAAFNLSKDDYTLT 614
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 605
+Y + GILP+ + +L+ +R++ K +K D+L + RQ ALK++A
Sbjct: 615 PNGDYFVKEHKRKGILPTILHELISARKKAKVDLKNETDPFRKDVL---NGRQLALKISA 671
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + +++ VTA GR ++ TK+ V+ + + +VIYGDTD
Sbjct: 672 NSVYGFTGATIGKLPCLAISSSVTAFGRVMIEETKNEVQSRYTTENGYDYDAQVIYGDTD 731
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D ++ K+G + + ++ +K ++L+ + VY LL+ KK+YA L ++
Sbjct: 732 SVMVKFGHQDIETCMKLGEEAANYVSQKFKNPIKLEFEKVYFPYLLINKKRYAGLYWTRP 791
Query: 716 SN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR-LQNIHEHM 773
KM + KG++ VRRD +L VI+++L +Y L++R + +
Sbjct: 792 EKFDKM----DTKGIETVRRDNCRLVQN----VITKVL------EYILEERNVDKAERFV 837
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
K+ DL V L+ L ITK +K K
Sbjct: 838 KQTIADLLQNRVDLSQLVITKAYSKHEYAAK 868
>gi|116754694|ref|YP_843812.1| DNA polymerase Pol2 [Methanosaeta thermophila PT]
gi|116666145|gb|ABK15172.1| replicative DNA polymerase I [Methanosaeta thermophila PT]
Length = 941
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 118/439 (26%), Positives = 201/439 (45%), Gaps = 91/439 (20%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I + V G++L + GG+S E L+L F VLP K +++ GE +A++ K
Sbjct: 413 IALARVSGSLLQDIVNGGQSGMVENLILRRFRSHKRVLPPKP--DSEESGERFTDADELK 470
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDS 544
G G VL P KG + +IL D+ SLYP+I+ +N+C++T+ P +++
Sbjct: 471 G--------GAVLPPVKGLVENVVIL-DYKSLYPTIMMAHNLCYSTVVTKERPPEVVKSP 521
Query: 545 DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLT 604
Y V GI+P +++L+E R + K LMK + D D +Q ALK+
Sbjct: 522 S----GGYFASPSVCKGIVPEILRELLEKRTETKMLMK--SAGEDERAFLDAKQYALKIL 575
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL------------------ 646
NS YG G+ +R ++ LA VT+ GR +L TK ++E +
Sbjct: 576 LNSFYGYSGYARARLYSLTLANAVTSFGRHNILRTKEMIEEIGSVYIVDGKALLPEETSV 635
Query: 647 -------------------NYEVIYGDTDSLMISC----NVNDYDSVFKIGNQI-KSECN 682
+ V+YGDTDS+ + ++ D+ IG +I ++ +
Sbjct: 636 SSNPKPPDTIELNSAGRRYDLSVVYGDTDSVFVRISSGYSITPEDAEL-IGRKIAETITS 694
Query: 683 KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSN-----------------GKMICSQE 725
KL K +EL + + + L KK+YA ++S G I ++
Sbjct: 695 KLPKPMELVFEAFARRAIFLAKKRYALWLFERVSTQSKPLDGVEGSSKTPSEGSGIIWRD 754
Query: 726 ---IKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR-TDLD 781
++G++ VRRDW L S+ + + IL E +DD +Q++ + ++++R D+
Sbjct: 755 RIKVRGMETVRRDWCDLTSKTLRRCLELILKEG-----RVDDAVQHVRDVIQRLRDMDIR 809
Query: 782 NGFVPLTLLEITKQLTKAP 800
L L +T++ TK P
Sbjct: 810 RDRELLDDLVLTRRFTKDP 828
>gi|294660060|ref|XP_002770696.1| DEHA2G22308p [Debaryomyces hansenii CBS767]
gi|199434442|emb|CAR66020.1| DEHA2G22308p [Debaryomyces hansenii CBS767]
Length = 1080
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 182/385 (47%), Gaps = 69/385 (17%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD-KQYGKNK 476
K+MC +N +A V G S L G+ + L E + V+P+ K G N+
Sbjct: 503 KLMCLVNYTEMA----RVTGVPFSYLLSRGQQIKVISQLFRKCLEDNIVIPNMKSEGSNE 558
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ Y G V+EP +G+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 559 E------------------YEGATVIEPIRGYYDVPIATLDFSSLYPSIMMAHNLCYTTL 600
Query: 537 PVRML--------QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+ D +T +Y + GILP+ + +L+ +R++ K S
Sbjct: 601 LNKQTIKNFNLTEDDYTLTPNGDYFVKDHKKKGILPTILDELLTARKKAK---------S 651
Query: 589 DLLMQYDI--------RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
DL M+ D RQ ALK++ANS+YG G + +++ VTA GRE++ TK
Sbjct: 652 DLKMETDPFKRDVLNGRQLALKISANSVYGFTGATIGKLPCLAISSSVTAFGREMIEKTK 711
Query: 641 SLVEN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLEL 690
+ VE + +VIYGDTDS+M+ D + K+G + + + K K ++L
Sbjct: 712 NEVEEFYSIKNGHPFDAQVIYGDTDSVMVKFGYEDLEKCMKLGEEAANFVSTKFKKPIKL 771
Query: 691 DIDGVYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+ + VY LL+ KK+YA L + KM + KG++ VRRD +L V+
Sbjct: 772 EFEKVYFPYLLINKKRYAGLYWTSTEKYDKM----DTKGIETVRRDNCRLVQNVITKVLE 827
Query: 750 QILDEQS------YTDYSLDDRLQN 768
IL E+ + ++ D LQN
Sbjct: 828 FILQERDVDKAVRFVKQTIADLLQN 852
>gi|157103868|ref|XP_001648163.1| DNA polymerase delta catalytic subunit [Aedes aegypti]
gi|108869323|gb|EAT33548.1| AAEL014178-PA [Aedes aegypti]
Length = 984
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 127/410 (30%), Positives = 192/410 (46%), Gaps = 62/410 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL Y++P
Sbjct: 405 KLMCVVNYMEMA----RVTGVPLSCLLTRGQQIKVMSQLLRKSKVCGYLIPSYH------ 454
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
G G + Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+
Sbjct: 455 ----------GSGSDEQ-YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLL 503
Query: 537 -PVR----MLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK---QPNL 586
P L D I T + V GILP ++ L+ +R++ KA +K P
Sbjct: 504 QPANKEKLHLTDDQITRTPTNNVFVKSSVRKGILPEILESLLAARKRAKADLKVETDPFK 563
Query: 587 SSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS----- 641
S L D RQ ALK++ANS+YG G + ++ VTA GR ++ TK
Sbjct: 564 RSVL----DGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEQTKQEVEQR 619
Query: 642 -LVENLNYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGV 695
VEN YE VIYGDTDS+M++ V + ++G + +K K ++L+ + V
Sbjct: 620 YTVEN-GYENDAVVIYGDTDSVMVNFGVKTLERSMELGREAAEFVSHKFVKPIKLEFEKV 678
Query: 696 YKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
Y LL+ KK+YA L ++ KM C KG++ VRRD S L + + ++L E
Sbjct: 679 YYPYLLINKKRYAGLYFTRPDKYDKMDC----KGIETVRRDNSPLVANLMNSCLQKLLIE 734
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++ + E K+ DL + ++ L ITK+L K+ K
Sbjct: 735 RN---------PEGAVEFAKQTIADLLCNRIDISQLVITKELAKSDYAAK 775
>gi|159463358|ref|XP_001689909.1| DNA polymerase delta subunit one [Chlamydomonas reinhardtii]
gi|158283897|gb|EDP09647.1| DNA polymerase delta subunit one [Chlamydomonas reinhardtii]
Length = 1091
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 119/410 (29%), Positives = 204/410 (49%), Gaps = 49/410 (11%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
I++ V G LS L G+S + LL K +V+P+ K +G G G
Sbjct: 516 IEMARVTGVPLSYLLTRGQSIKVFSQLLRKAAAKGFVIPNI-----KVQGPVAGADGVG- 569
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IPVRMLQD 543
Y G VL+PK GFYD+ + +DF SLYPSI+ +N+C+TT + + +D
Sbjct: 570 ------YEGATVLDPKIGFYDRPVATLDFASLYPSIMMAHNLCYTTLLTKDQLNIVPPED 623
Query: 544 SDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKA 600
+ + ++ + G+LP +++L+ +R++ K +K P + L D RQ A
Sbjct: 624 REQSPSGDWFVRNSRQRGLLPEILEELLAARKRAKNDLKAEKDPFKRAVL----DGRQLA 679
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVI 651
LK++ANS+YG G + ++A T+ GRE+++ T+ LV+ + EVI
Sbjct: 680 LKVSANSVYGFTGATVGKMPCLAISASTTSYGREMIMTTRQLVQEHYTRANGYETDCEVI 739
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAAL 710
YGDTDS+M++ V D ++G + + +K + ++L+ + VY LL+ KK+YA L
Sbjct: 740 YGDTDSVMVNFKVADVARAMELGREAAAVVSKAFPPPVKLEFEKVYYPYLLMNKKRYAGL 799
Query: 711 SISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
++ ++ KM + KG++ VRRD L + +IL + +Q
Sbjct: 800 LWTRPETHDKM----DSKGIETVRRDNCLLVRNVVTTCLERIL---------IGKDVQGA 846
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
++K + DL + L+LL I+K LT+ + + I + L++ R R
Sbjct: 847 VGYVKGVIADLLMNKIDLSLLVISKGLTQDADEYEGKIAHVELAKKMRKR 896
>gi|324120682|dbj|BAJ78732.1| DNA polymerase delta catalytic subunit [Metriocampa sp. 44]
Length = 1115
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/402 (29%), Positives = 190/402 (47%), Gaps = 58/402 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + +L E+ V+P Q + +
Sbjct: 539 KLMCIINYMEMA----RVTGVPLSFLLTRGQQVKVMSQILRKAREQKLVVPTYQSRASDE 594
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ + G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+
Sbjct: 595 Q-----------------FEGATVIEPNKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLL 637
Query: 538 V----RMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSS 588
+ L D T + + G+LP ++ L+ +R++ K +K P
Sbjct: 638 APGSEKTLGAEDFVRTPSGNLFVKSTLRKGLLPEILENLLAARKKAKEELKNEKDPFRCK 697
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--- 645
L D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 698 VL----DGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTAFGRTMIELTKKEVEARYS 753
Query: 646 ------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKY 698
+ +VIYGDTDS+M+ V K+G + + K ++L+ + VY
Sbjct: 754 TSQGAEQDAKVIYGDTDSVMVRFGVQTVAEAMKLGKEAAEFVSTKFIPPIKLEFEKVYFP 813
Query: 699 MLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
LL+ KK+YA L ++ + KM C KG++ VRRD L ++ + +IL
Sbjct: 814 YLLINKKRYAGLYFTRPEIHDKMDC----KGIETVRRDNCPLVAKLISTCLQKIL----- 864
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+D Q +H +++ +DL V ++ L ITK+LTK
Sbjct: 865 ----VDRDPQGAKQHAQQVISDLLCNRVDISQLVITKELTKT 902
>gi|240147812|gb|ACS45142.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T KGR
Sbjct: 3 RKNVKKLMADPRESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITTKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
EIL +T L E + EVIYGDTDS+MI+ N ++ ++G +K + NK YK LE+
Sbjct: 62 EILQDTVDLAEKESMEVIYGDTDSIMINTNTSEMQKALEVGKILKEKVNKRYKLLEI 118
>gi|384486877|gb|EIE79057.1| hypothetical protein RO3G_03762 [Rhizopus delemar RA 99-880]
Length = 1059
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 179/348 (51%), Gaps = 42/348 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQ--DSDI 546
Y G V++P+KG+YD I +DF SLYPSI+Q +N+C+TT+ P + +++ D ++
Sbjct: 535 YEGATVIDPEKGYYDVPITTLDFTSLYPSIMQAHNLCYTTLLKPEVAQRLGLVKGVDYEV 594
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKALKL 603
T + + G+LP + L+ +R++ K +K+ P + L D RQ ALK+
Sbjct: 595 TPNNDLFVKATRRKGLLPEILSDLLSARKRAKNDLKKEKDPFKRAVL----DGRQLALKI 650
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGD 654
+ANS+YG G + +++ VTA GR +++ TK VE+ + +VIYGD
Sbjct: 651 SANSVYGFTGATVGKLPCLQISSSVTAYGRGMIIKTKETVEDHFSKKNGYKHDAKVIYGD 710
Query: 655 TDSLMISCNVNDYDSVFKIGNQ-IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+MI V++ ++G + K K + + LD + VY LL+ KK+YA L +
Sbjct: 711 TDSVMIKFGVDNLKEAMQLGRESAKLVTEKFIRPINLDFEKVYFPYLLISKKRYAGLYWT 770
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ + + KG++ VRRD +L S VIS+ LD+ + + E +
Sbjct: 771 REDKYDKL---DAKGIETVRRDNCRLVSN----VISKCLDK-----LLVQRNVAGAQEFV 818
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRR 821
K+ DL V L+ L ITK L+K+ K Q + R R+R
Sbjct: 819 KQTIADLLQNKVDLSQLVITKALSKSDYANK----QAHVELAERMRKR 862
>gi|339245491|ref|XP_003378671.1| DNA polymerase delta catalytic subunit [Trichinella spiralis]
gi|316972406|gb|EFV56084.1| DNA polymerase delta catalytic subunit [Trichinella spiralis]
Length = 1069
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/314 (31%), Positives = 159/314 (50%), Gaps = 43/314 (13%)
Query: 469 DKQYGKNKKEGEETGEAN----KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPS 524
D+ Y +G +T E N + Y+G V+EP KG+Y+K I+ +DF SLYPS
Sbjct: 535 DQSYFTTDAQGSQTREQNLFLPAVRSEVGEDYTGATVIEPIKGYYNKPIVTLDFASLYPS 594
Query: 525 IIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDT-------------GILPSEIKKLV 571
I+ +N+C+TT+ ++Q+ T + PE + T G+LP ++ L+
Sbjct: 595 IMMAHNLCYTTL---IMQE---TVRSQLSPEDYIKTPSGHYFVKKDKCKGLLPEILENLL 648
Query: 572 ESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVT 629
+R+ VK MK + +D D RQ ALK++ANS+YG G + ++ VT
Sbjct: 649 AARKAVKQQMK---VETDAFRRQVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVT 705
Query: 630 AKGREILLNTKSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSE 680
A GR ++ TK VE + + +VIYGDTDS+M+ ++ + ++G + +
Sbjct: 706 AFGRMMIDKTKEEVEKQFVKANGYSADAKVIYGDTDSVMVDFGLDTLEKAMEMGREAAAF 765
Query: 681 CN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKL-SNGKMICSQEIKGVDVVRRDWSQ 738
+ K ++L+ + VY LL+ KK+YA L + S KM C KG++ VRRD
Sbjct: 766 VSAKFVNPIKLEFEKVYFPYLLISKKRYAGLYFTNTQSYDKMDC----KGIETVRRDNCP 821
Query: 739 LASEAGKFVISQIL 752
L + + +IL
Sbjct: 822 LVANVLNTCLEKIL 835
>gi|156616275|ref|NP_002682.2| DNA polymerase delta catalytic subunit [Homo sapiens]
gi|379030588|ref|NP_001243778.1| DNA polymerase delta catalytic subunit [Homo sapiens]
gi|50403732|sp|P28340.2|DPOD1_HUMAN RecName: Full=DNA polymerase delta catalytic subunit; AltName:
Full=DNA polymerase subunit delta p125
gi|21885469|gb|AAM76971.1| polymerase (DNA directed), delta 1, catalytic subunit [Homo
sapiens]
gi|119592262|gb|EAW71856.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa,
isoform CRA_a [Homo sapiens]
gi|119592263|gb|EAW71857.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa,
isoform CRA_a [Homo sapiens]
Length = 1107
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 199/412 (48%), Gaps = 57/412 (13%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ L VL A+++ V G LS L G+ + LL + ++P
Sbjct: 513 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMP- 571
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +
Sbjct: 572 ----VVKSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAH 614
Query: 530 NICFTTI--P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
N+C+TT+ P + + +D I T + + V G+LP ++ L+ +R++ KA +
Sbjct: 615 NLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAEL 674
Query: 582 KQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
+ +D L D RQ ALK++ANS+YG G + ++ VT GR+++ T
Sbjct: 675 AK---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKT 731
Query: 640 KSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LE 689
K LVE + + +V+YGDTDS+M V+ +G + + + +
Sbjct: 732 KQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIR 791
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFV 747
L+ + VY LL+ KK+YA L S + +M C KG++ VRRD L +
Sbjct: 792 LEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTAS 847
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H + + +DL + ++ L ITK+LT+A
Sbjct: 848 LRRLL---------IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRA 890
>gi|444316824|ref|XP_004179069.1| hypothetical protein TBLA_0B07320 [Tetrapisispora blattae CBS 6284]
gi|387512109|emb|CCH59550.1| hypothetical protein TBLA_0B07320 [Tetrapisispora blattae CBS 6284]
Length = 1104
Score = 127 bits (320), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 171/327 (52%), Gaps = 38/327 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP---------VRMLQDSDI 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ +++ +D I
Sbjct: 594 YEGATVIEPIRGYYDIPIATLDFNSLYPSIMMAHNLCYTTLCNKQIVNSLNLKLDEDYII 653
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKALKLT 604
T +Y + GILP + L+ +R++ K +K + D+L + RQ ALK++
Sbjct: 654 TPNGDYFVTEKRRHGILPIILNDLISARKKAKNDLKKEKDPFKRDVL---NGRQLALKIS 710
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-----LNYE----VIYGDT 655
ANS+YG G + +++ VT+ GR+++L TK+ V++ YE V+YGDT
Sbjct: 711 ANSVYGFTGATVGKLPCLAISSSVTSFGRKMILETKNAVQDKYSVKNGYEHDAVVVYGDT 770
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ +D ++G + + + L+K + L+ + VY LL+ KK+YA L
Sbjct: 771 DSVMVKFGTSDLKESMRLGTEAAAWVSTLFKHPINLEFEKVYFPYLLINKKRYAGL---Y 827
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
+N + KG+ VRRD L S V+ IL D ++D L E++K
Sbjct: 828 WTNPDKFDKLDQKGLASVRRDSCPLVSIVMNRVLKTIL-----IDRNVDGAL----EYVK 878
Query: 775 KIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ DL + ++ L I+K L AP+
Sbjct: 879 DVIDDLLHNRADISKLIISKTL--APQ 903
>gi|327352438|gb|EGE81295.1| DNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1106
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 190/381 (49%), Gaps = 60/381 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +FL L E+ V+P+ +N
Sbjct: 523 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFLSQLFRKALEQQLVIPNL---RN 573
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ E+ Y G V+EP + +YD I +DF SLYPSIIQ +N+C+TT
Sbjct: 574 ESTSEQ--------------YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTT 619
Query: 536 IPVRMLQDSD---------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ + D+ +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 620 LLKKSTIDTHQMKEGEDYIVTPNGDRFCTSKVRKGLLTQILEELLGARKRAK---KELAV 676
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G R P+A+ T+ GR+++ TK VE
Sbjct: 677 ETDPFKKAVLNGRQLALKISANSVYGLTGATVGRLPCLPIASSTTSYGRQMIEKTKEEVE 736
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDG 694
+ + +V+YGDTDS+M+ + D K+G + + K K ++L+ +
Sbjct: 737 AKFTIANGYSHDAKVVYGDTDSVMVKFGMQDLAEAMKLGREAADFVSAKFIKPIKLEFEK 796
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L ++ KM + KG++ VRRD ++ + V+ +IL
Sbjct: 797 VYFPYLLINKKRYAGLYWTRPDKYDKM----DTKGIETVRRDNCRMVQTVIETVLRKILI 852
Query: 754 E------QSYTDYSLDDRLQN 768
+ QSY ++ D LQN
Sbjct: 853 DRDVGAAQSYVKDTISDLLQN 873
>gi|73669283|ref|YP_305298.1| replicative DNA polymerase I [Methanosarcina barkeri str. Fusaro]
gi|72396445|gb|AAZ70718.1| replicative DNA polymerase I [Methanosarcina barkeri str. Fusaro]
Length = 932
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/363 (29%), Positives = 173/363 (47%), Gaps = 60/363 (16%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+ + V G++L + GG++ E LLL F + VL K + G
Sbjct: 405 VALAQVSGSLLQEVVDGGQTSMVETLLLKEFGLRDRVLLPK--------------PDDGV 450
Query: 490 GRKKAAYS----GGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
++ A S GG VLEPKKG + +IL D+ SLYP+I+ +N+C+TT+ SD
Sbjct: 451 SAERYAMSSDLKGGEVLEPKKGLLENVLIL-DYKSLYPTIMMAHNLCYTTVVTG--DKSD 507
Query: 546 ITTL-----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
T+ E++P +V GI+PS ++ L+ R Q K M+ + ++ + D Q A
Sbjct: 508 GVTIRPPSGGEFVP-SEVFKGIVPSILEDLLNKRTQTKKRMRGTSNENEYRV-LDATQLA 565
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--------------- 645
LK+ NS YG G+ +R ++ LA VT+ GR +LNT+ ++ N
Sbjct: 566 LKILLNSFYGYSGYARARLYSLTLANAVTSFGRSNILNTREIINNTIGKIILRNKTALLL 625
Query: 646 ------------LNYEVIYGDTDSLMISCNVN---DYDSVFKIGNQIKSECN-KLYKQLE 689
+ V YGDTDS+ + C + V IGN++ + + L +E
Sbjct: 626 DEAGELSPQDRVVELSVAYGDTDSVFVHCKSRGDLSLEEVSLIGNRLANIVSVSLPDPME 685
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
L+ + + K LL+ KK+Y AL + N ++KG++ VRRDW +L S V+
Sbjct: 686 LEFESIAKRALLIAKKRY-ALWFFEPKNSGWEDKIKVKGMETVRRDWCELTSVTLNRVLE 744
Query: 750 QIL 752
+L
Sbjct: 745 LVL 747
>gi|181620|gb|AAA58439.1| DNA polymerase-delta catalytic-subunit [Homo sapiens]
Length = 1107
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 199/412 (48%), Gaps = 57/412 (13%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ L VL A+++ V G LS L G+ + LL + ++P
Sbjct: 513 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMP- 571
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +
Sbjct: 572 ----VVKSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAH 614
Query: 530 NICFTTI--P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
N+C+TT+ P + + +D I T + + V G+LP ++ L+ +R++ KA +
Sbjct: 615 NLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAEL 674
Query: 582 KQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
+ +D L D RQ ALK++ANS+YG G + ++ VT GR+++ T
Sbjct: 675 AK---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKT 731
Query: 640 KSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LE 689
K LVE + + +V+YGDTDS+M V+ +G + + + +
Sbjct: 732 KQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIR 791
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFV 747
L+ + VY LL+ KK+YA L S + +M C KG++ VRRD L +
Sbjct: 792 LEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTAS 847
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H + + +DL + ++ L ITK+LT+A
Sbjct: 848 LRRLL---------IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRA 890
>gi|224002805|ref|XP_002291074.1| DNA polymerase [Thalassiosira pseudonana CCMP1335]
gi|220972850|gb|EED91181.1| DNA polymerase, partial [Thalassiosira pseudonana CCMP1335]
Length = 999
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 185/375 (49%), Gaps = 45/375 (12%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD-KQYGKNK 476
++M +L+VL +++ V G +S + G+ + ++L + + V+P ++ G
Sbjct: 417 RLMDKLSVLINYVEMARVTGVPVSFLISRGQQIKVFSMILRKCRDVNLVVPTLRKSGAGA 476
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
EG Y G VL+P K +Y+ I +DF SLYPSI+Q YN+C++T+
Sbjct: 477 DEG----------------YEGATVLDPIKSYYEVPIATLDFASLYPSIMQAYNLCYSTM 520
Query: 537 PVRMLQDSDI-------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
V + S I + V GILP +++L+ +R++ K MK +
Sbjct: 521 -VSQHEASKIDPSKYKRSENGHTFVHSNVKKGILPIILEELLSARKRAKKDMKNAPNDFE 579
Query: 590 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---- 645
+Q + RQ ALK++ANS+YG G + P+A+ VTA GR +L TK+ VE
Sbjct: 580 KSVQ-NGRQLALKVSANSVYGFTGAGVGQLPCVPIASSVTAYGRFLLEKTKAYVEEHYTV 638
Query: 646 -----LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK-QLELDIDGVYKYM 699
N +V+YGDTDS+M+ F + + +C+ ++ + L+ + VY
Sbjct: 639 AHGYKHNAKVVYGDTDSVMVKFGTATVAETFPLAIEAAEKCSAIFPDPILLEFEKVYYPY 698
Query: 700 LLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS--- 756
LL+ KK+YA L +++ + + KG++ VRRD L E + +++I+ E++
Sbjct: 699 LLMNKKRYAGLMWTQVEKYDYM---DTKGLETVRRDNCALVREVIQTSLNKIIIERNVPG 755
Query: 757 ---YTDYSLDDRLQN 768
Y + D LQN
Sbjct: 756 AIDYVKSQIADLLQN 770
>gi|145592085|ref|YP_001154087.1| DNA polymerase II [Pyrobaculum arsenaticum DSM 13514]
gi|145283853|gb|ABP51435.1| replicative DNA polymerase I [Pyrobaculum arsenaticum DSM 13514]
Length = 786
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 186/379 (49%), Gaps = 58/379 (15%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP IQ+++V G L + R E++LL + V P N++E
Sbjct: 350 LLPFLIQLSSVSGLPLDQVAAASVGNRVEWMLLRYAYGLGEVAP------NREE------ 397
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ-- 542
R+ Y G +VLEPK G Y ++L DF+S+YP+++ YN+ P L+
Sbjct: 398 ------REYEPYKGAIVLEPKPGLYGDVLVL-DFSSMYPNVMMRYNLS----PDTYLEPG 446
Query: 543 DSDITTLCEYLPE--HQV---DTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYD 595
+ D PE H+ G +P +++LV RR V+ MK QP S ++ D
Sbjct: 447 EPDPPEGVYVAPEVGHRFRKEPPGFIPQVLRRLVTLRRAVREEMKKYQPETSEYRIL--D 504
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDT 655
RQKALK+ AN+MYG G+ +R++ + +A VTA R IL + L VIYGDT
Sbjct: 505 ERQKALKIMANAMYGYTGWVGARWYKKEVAESVTAFARAILKDVIGYARRLGIMVIYGDT 564
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ--LELDIDGVYKYMLLLK-KKKYAALSI 712
DSL + K G ++ + ++ +E+ D Y+ +L + KK+YA L
Sbjct: 565 DSLFV-----------KKGGDLEKLARYVDEKYGIEIKADKDYEKVLFTEAKKRYAGL-- 611
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY--SLDDRLQNIH 770
L +G++ +I G +VVR DWS+LA E VI IL + ++ + ++++
Sbjct: 612 --LRDGRI----DIVGFEVVRGDWSELAKEVQLKVIELILKARDLSEARQRVIKYVKDVI 665
Query: 771 EHMKKIRTDLDNGFVPLTL 789
E +K + DLD+ + TL
Sbjct: 666 ERLKSGKFDLDDLIIWKTL 684
>gi|14250670|gb|AAH08800.1| Polymerase (DNA directed), delta 1, catalytic subunit 125kDa [Homo
sapiens]
gi|123998555|gb|ABM86879.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa
[synthetic construct]
gi|157929094|gb|ABW03832.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa
[synthetic construct]
Length = 1107
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 199/412 (48%), Gaps = 57/412 (13%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ L VL A+++ V G LS L G+ + LL + ++P
Sbjct: 513 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMP- 571
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +
Sbjct: 572 ----VVKSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAH 614
Query: 530 NICFTTI--P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
N+C+TT+ P + + +D I T + + V G+LP ++ L+ +R++ KA +
Sbjct: 615 NLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAEL 674
Query: 582 KQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
+ +D L D RQ ALK++ANS+YG G + ++ VT GR+++ T
Sbjct: 675 AK---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKT 731
Query: 640 KSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LE 689
K LVE + + +V+YGDTDS+M V+ +G + + + +
Sbjct: 732 KQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIR 791
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFV 747
L+ + VY LL+ KK+YA L S + +M C KG++ VRRD L +
Sbjct: 792 LEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTAS 847
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H + + +DL + ++ L ITK+LT+A
Sbjct: 848 LRRLL---------IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRA 890
>gi|195590609|ref|XP_002085037.1| GD12524 [Drosophila simulans]
gi|194197046|gb|EDX10622.1| GD12524 [Drosophila simulans]
Length = 1096
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 41/334 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----------RMLQDSD 545
Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ + LQD
Sbjct: 566 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTREKLRQQENLQDDQ 625
Query: 546 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 601
+ T Y + +V G+LP ++ L+ +R++ K +K + +D + D RQ AL
Sbjct: 626 VERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK---VETDPFKRKVLDGRQLAL 682
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIY 652
K++ANS+YG G + ++ VTA GR ++ TK+ VE+ N VIY
Sbjct: 683 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIELTKNEVESHYTQANGYENNAVVIY 742
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M++ V + ++G + +K ++L+ + VY LL+ KK+YA L
Sbjct: 743 GDTDSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLY 802
Query: 712 ISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
++ + KM C KG++ VRRD S L + + ++L E+ D ++
Sbjct: 803 FTRPDTYDKMDC----KGIETVRRDNSPLVANLMNSCLQKLLIERD-PDGAV-------- 849
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++K++ DL + ++ L ITK+L K K
Sbjct: 850 AYVKQVIADLLCNRIDISHLVITKELAKTDYAAK 883
>gi|374633834|ref|ZP_09706199.1| DNA polymerase elongation subunit (family B) [Metallosphaera
yellowstonensis MK1]
gi|373523622|gb|EHP68542.1| DNA polymerase elongation subunit (family B) [Metallosphaera
yellowstonensis MK1]
Length = 797
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 174/346 (50%), Gaps = 52/346 (15%)
Query: 413 SSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY 472
S+Y++K + LP Q+T + G L + M R E+LL+ ++ + ++P
Sbjct: 362 STYLLKDVF----LPFGEQLTIISGLPLDQLPMASVGYRVEWLLMREAYKFNELIP---- 413
Query: 473 GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNIC 532
N+ E R +Y GGLV+EPK G ++ ++L DF S+YPSI+ +YNI
Sbjct: 414 --NRLE------------RPHESYKGGLVIEPKPGIHENVVVL-DFTSMYPSIMVKYNIG 458
Query: 533 FTTIPVRMLQDSDITTLCEYLPE-----HQVDTGILPSEIKKLVESRRQVKALMKQPNLS 587
T+ +D C PE + G +K L+E R+ +K +K
Sbjct: 459 PDTLVRGECRD------CWTAPEVGYKFRKSPDGFYRRILKVLLEERKAIKEKLKDVT-D 511
Query: 588 SDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN 647
+ + RQKALK+ AN+ YG +G+ N+R++++ A VTA GRE + + +
Sbjct: 512 EYERRRLEERQKALKVMANAFYGYMGWLNARWYSKEGAEAVTAWGRETIRKAIEMASGMG 571
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKK 706
+E+IYGDTDS+ + +++ K+G ++ ++L LE+ +D YK + + KK+
Sbjct: 572 FEIIYGDTDSIFVKGDLS------KVGRLVEEITSRL--DLEIKVDKKYKRIFFTENKKR 623
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA L+ K+ +I G + +R DW +LA EA + VI L
Sbjct: 624 YAGLT----EENKI----DIVGFEAIRGDWCELAKEAQRMVIETTL 661
>gi|62736744|gb|AAX97698.1| DNA polymerase [Pyrobaculum arsenaticum]
Length = 786
Score = 127 bits (319), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 186/379 (49%), Gaps = 58/379 (15%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP IQ+++V G L + R E++LL + V P N++E
Sbjct: 350 LLPFLIQLSSVSGLPLDQVAAASVGNRVEWMLLRYAYGLGEVAP------NREE------ 397
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ-- 542
R+ Y G +VLEPK G Y ++L DF+S+YP+++ YN+ P L+
Sbjct: 398 ------REYEPYKGAIVLEPKPGLYGDVLVL-DFSSMYPNVMMRYNLS----PDTYLEPG 446
Query: 543 DSDITTLCEYLPE--HQV---DTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYD 595
+ D PE H+ G +P +++LV RR V+ MK QP S ++ D
Sbjct: 447 EPDPPEGVYVAPEVGHRFRKEPPGFIPQVLRRLVTLRRAVREEMKKYQPETSEYRIL--D 504
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDT 655
RQKALK+ AN+MYG G+ +R++ + +A VTA R IL + L VIYGDT
Sbjct: 505 ERQKALKIMANAMYGYTGWVGARWYKKEVAESVTAFARAILKDVIGYARRLGIMVIYGDT 564
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ--LELDIDGVYKYMLLLK-KKKYAALSI 712
DSL + K G ++ + ++ +E+ D Y+ +L + KK+YA L
Sbjct: 565 DSLFV-----------KKGGDLEKLARYVDEKYGIEIKADKDYEKVLFTEAKKRYAGL-- 611
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY--SLDDRLQNIH 770
L +G++ +I G +VVR DWS+LA E VI IL + ++ + ++++
Sbjct: 612 --LRDGRI----DIVGFEVVRGDWSELAKEVQLKVIELILKARDLSEARQRVIKYVKDVI 665
Query: 771 EHMKKIRTDLDNGFVPLTL 789
E +K + DLD+ + TL
Sbjct: 666 ERLKSGKFDLDDLIIWKTL 684
>gi|169615194|ref|XP_001801013.1| hypothetical protein SNOG_10753 [Phaeosphaeria nodorum SN15]
gi|160702905|gb|EAT82147.2| hypothetical protein SNOG_10753 [Phaeosphaeria nodorum SN15]
Length = 1115
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 115/403 (28%), Positives = 194/403 (48%), Gaps = 58/403 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGN-VLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
K+MC +N +A ++T V N +L+R G+ R L + ++PD
Sbjct: 524 KLMCLVNYTEMA-RVTGVPFNYILAR----GQQIRFVSQLFRKALDHQLIVPDL------ 572
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+G Y G V+EPK+G+Y + + +DF SLYPSI+Q +N+C+TT
Sbjct: 573 ----------PNQGDNGDQYEGATVIEPKRGYYKQPVATLDFASLYPSIMQAHNLCYTTW 622
Query: 537 -------PVRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLS 587
++M +D D +T + + G+L +++L+ +R++ K K+ +
Sbjct: 623 LDRQTVEKLKMKKDEDYIVTPNGDMFCTAKTRKGLLSQILEELLGARKRAK---KELAVE 679
Query: 588 SDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE- 644
+D + + RQ ALK+TANS+YG G N + +A+ T+ GR+++ TK+ VE
Sbjct: 680 TDPFKKAVLNGRQLALKVTANSVYGLTGATNGKLPCLAIASSTTSIGRQMIEKTKAEVEA 739
Query: 645 --------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGV 695
+ + EVIYGDTDS+M+ ++ K+G + +K K ++L+ + V
Sbjct: 740 KYNIANGYSHDAEVIYGDTDSVMVKFGTSELAEAMKLGEEAAQYVSSKFVKPIKLEFEKV 799
Query: 696 YKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
Y LL+ KK+YA L +N + KG++ VRRD +L + +L
Sbjct: 800 YFPYLLINKKRYAGL---YWTNPVKWDKMDTKGIETVRRDNCRLVVNVIDTSLRMLL--- 853
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+D + E +K+ DL + L+ L ITK LTK
Sbjct: 854 ------IDQDPEGAQEFVKETIADLLQNKIDLSNLVITKALTK 890
>gi|240147828|gb|ACS45150.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 81/117 (69%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ + DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T KGR
Sbjct: 3 RKNVKKLMADPKESASY-ARVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITTKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
EIL +T L E + EVIYGDTDS+MI+ N ++ +IG +K NK YK LE+
Sbjct: 62 EILQDTVDLAEKESMEVIYGDTDSIMINTNTSEMQKASEIGKLLKELVNKQYKSLEI 118
>gi|341875870|gb|EGT31805.1| hypothetical protein CAEBREN_32455 [Caenorhabditis brenneri]
Length = 1017
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 107/338 (31%), Positives = 171/338 (50%), Gaps = 57/338 (16%)
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRML 541
EAN G G Y G V++P +GFY++ I +DF SLYPSI+ +N+C+TT+ + +
Sbjct: 563 EANSGDGE---GYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKAPQGI 619
Query: 542 QDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIR 597
++ D T +Y G+LP ++ ++ +R++ K MK D M Y+ R
Sbjct: 620 ENEDYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKN---EKDEFKRMVYNGR 676
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL----------- 646
Q ALK++ANS+YG G + ++ VTA GR+++ TKS VE +
Sbjct: 677 QLALKISANSVYGFTGATVGKLPCLEISQSVTAFGRKMIDMTKSEVERIYKKGALDGKCP 736
Query: 647 -NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
+ +VIYGDTDS+M+ V +IG L+ + VY LL+ KK
Sbjct: 737 ADAKVIYGDTDSVMVKFGVETVAQAMEIG-------------LDAAKEKVYSPYLLINKK 783
Query: 706 KYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DEQSYTDYS 761
+YA L +K + KM C KG++ VRRD L ++ + ++L D+QS D++
Sbjct: 784 RYAGLYFTKPDVHDKMDC----KGLETVRRDNCPLVAKVLGVCLEKLLIDRDQQSALDFA 839
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
K+ +DL + ++LL I+K+LTK+
Sbjct: 840 ------------KRTISDLLCNKIDISLLIISKELTKS 865
>gi|296234423|ref|XP_002762441.1| PREDICTED: DNA polymerase delta catalytic subunit [Callithrix
jacchus]
Length = 1107
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 117/412 (28%), Positives = 200/412 (48%), Gaps = 57/412 (13%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ L VL A+++ V G LS L G+ + LL ++ ++P
Sbjct: 513 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAKQEGLLMP- 571
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
+ EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +
Sbjct: 572 ----VVRSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAH 614
Query: 530 NICFTTI--P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
N+C+TT+ P + + +D I T + + V G+LP ++ L+ +R++ KA +
Sbjct: 615 NLCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAEL 674
Query: 582 KQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
+ +D L D RQ ALK++ANS+YG G + ++ VT GR+++ T
Sbjct: 675 AR---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKT 731
Query: 640 KSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LE 689
K LVE + + +V+YGDTDS+M V+ +G + + + +
Sbjct: 732 KQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIR 791
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFV 747
L+ + VY LL+ KK+YA L S + +M C KG++ VRRD L +
Sbjct: 792 LEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTAS 847
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H + + +DL + ++ L ITK+LT+A
Sbjct: 848 LRRLL---------IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRA 890
>gi|312375081|gb|EFR22517.1| hypothetical protein AND_15085 [Anopheles darlingi]
Length = 1160
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 73/99 (73%), Gaps = 2/99 (2%)
Query: 1 MLILATFVPTTDNFSGGV--DVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVG 58
ML+LATF P TD FS G + + ++ S+DL+D +G VLS IPGKGH+K++TAG+G
Sbjct: 1 MLVLATFFPDTDTFSEGAPFNFIAEFLRCSVDLVDLLGLAFVLSRIPGKGHSKLITAGLG 60
Query: 59 WAGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
WA AEV+L+R L LW GARGAEF W YIQ L+SNI LI
Sbjct: 61 WAAAEVVLSRGLLLWFGARGAEFSWIYIQRCLESNILLI 99
>gi|91779167|ref|YP_554375.1| DNA polymerase II [Burkholderia xenovorans LB400]
gi|91691827|gb|ABE35025.1| DNA damage-inducible DNA polymerase II [Burkholderia xenovorans
LB400]
Length = 816
Score = 127 bits (318), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 103/371 (27%), Positives = 170/371 (45%), Gaps = 62/371 (16%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
+ +I + ++LP ++ +V G R+ GG L + H + YV P+
Sbjct: 370 VTRIFAKTDLLPFLLERASVTGLPADRS--GGSVAAFTHLYMPRMHRQGYVAPNL----- 422
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
G+ G AA GG V++ + G YD ++L D+ SLYPSII+ + I
Sbjct: 423 ---GDVAG----------AASPGGFVMDSRPGLYDSVLVL-DYKSLYPSIIRTFLIDPAG 468
Query: 536 IPVRMLQDSDITTLCEYLPEHQVDT-GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
+ ML +D ++ +L T LPS + ++ + R K +P
Sbjct: 469 LVEGMLNPADDQSVPGFLGARFSRTRHCLPSIVGQVWQGRETAKRENNKP---------- 518
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 654
+ALK+ N+ YG LG RFF LA+ +T +G EI+ T+ L++ YEVIYGD
Sbjct: 519 --LSQALKIIMNAFYGVLGSTGCRFFDPRLASSITMRGHEIMHATRELIQGEGYEVIYGD 576
Query: 655 TDSLMISC-NVNDYDSVFKIGNQIKSECNKLYKQ-----------LELDIDGVYKYMLLL 702
TDS + + + + +IG+ + N ++Q LEL + Y+ +
Sbjct: 577 TDSTFVWLRHAHGEEDASRIGHALVEHINAWWRQNLRERFGLDSALELQFERHYRRFFMP 636
Query: 703 --------KKKKYAALSISKLSNGKMICSQEI--KGVDVVRRDWSQLASEAGKFVISQIL 752
KK+YA L++ L +G+ ++I KG++ VR DW+ LA + + + +I
Sbjct: 637 TVRGAEEGSKKRYAGLTV--LPDGR----EDIVYKGLETVRTDWTPLAQQFQQELYRRIF 690
Query: 753 DEQSYTDYSLD 763
Q Y DY D
Sbjct: 691 TRQPYQDYVRD 701
>gi|71033557|ref|XP_766420.1| DNA polymerase delta catalytic subunit [Theileria parva strain
Muguga]
gi|68353377|gb|EAN34137.1| DNA polymerase delta catalytic subunit, putative [Theileria parva]
Length = 1095
Score = 127 bits (318), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 148/279 (53%), Gaps = 30/279 (10%)
Query: 488 GKGRKKA---AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRM 540
G G+ + +Y G VLEP KG++ I ++DF SLYPSI+ +NIC++T+ +
Sbjct: 561 GGGKSSSNENSYEGATVLEPLKGYHKNPISVLDFQSLYPSIMIAHNICYSTLLNYNTINN 620
Query: 541 LQDSDITTLCEYLPEHQVDT----GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--Y 594
+ DI T+ Y ++ GILP ++ L+ R++ K +M + D +++ Y
Sbjct: 621 YKPEDIVTVPGYNDICFINVKKRKGILPIIVENLINERKKAKKMMNE---CKDEMLKKVY 677
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFF-AQPLAALVTAKGREILLNTKSLVEN-------- 645
D RQ ALK+T NS+YG G + F +A +T+ GR +++NTK L+E
Sbjct: 678 DGRQLALKITTNSVYGYTGATSGGFLPCIDVATAITSFGRNMIVNTKDLIEEHFSRKNGF 737
Query: 646 -LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLK 703
+ +VIYGDTDS+MI+ +D +G +K + + L + VYK +LLL
Sbjct: 738 KFDSKVIYGDTDSVMINFGTDDIQEAIDLGKSAADLITSKSVRPITLLFEKVYKPLLLLS 797
Query: 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASE 742
KK+YA L N + I + KG++ VRRD+ L +
Sbjct: 798 KKRYAGLYYVNSENYEKI---DCKGIESVRRDFCLLIQQ 833
>gi|452986964|gb|EME86720.1| hypothetical protein MYCFIDRAFT_202624 [Pseudocercospora fijiensis
CIRAD86]
Length = 1089
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 172/336 (51%), Gaps = 36/336 (10%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML---------QDSDI 546
Y G V+EP +G+YD + +DF SLYPSI+Q +N+C+TT+ + +D +
Sbjct: 563 YEGATVIEPTRGYYDVPVATLDFASLYPSIMQAHNLCYTTLLNKTAIEKLDLKKDEDYIV 622
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLT 604
T + +V G+L +++L+ +R++ K K+ + +D + + RQ ALK++
Sbjct: 623 TPNGDLFCTTKVRKGLLSQILEELLGARKRAK---KELAVETDPFKKAVLNGRQLALKIS 679
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + +A+ T+ GR+++ TK+ VE + + +VIYGDT
Sbjct: 680 ANSVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKAEVEARYTIANGYSHDAQVIYGDT 739
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ ND ++G + +K K ++L+ + VY LL+ KK+YA L
Sbjct: 740 DSVMVKFGPNDLAKAMELGEDAANYVSSKFIKPIKLEFEKVYYPYLLINKKRYAGL---Y 796
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
+N + KG++ VRRD +L + + +L EQ +Q +++K
Sbjct: 797 WTNTTKYDKMDTKGIETVRRDNCRLVQNVIETSLRMLLIEQD---------VQGAQDYVK 847
Query: 775 KIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQI 810
+ ++L + ++ L ITK L+K+ K T++
Sbjct: 848 ETISELLQNRIDMSNLVITKALSKSDYASKQAHTEL 883
>gi|307104026|gb|EFN52282.1| hypothetical protein CHLNCDRAFT_139024 [Chlorella variabilis]
Length = 1342
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 31/220 (14%)
Query: 197 DDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDR 256
D SLPL + + +DA E+ QPGTVYLFGKV +++ H SCC IV+ + R
Sbjct: 369 DGSLPL----DGGGQLPFYLVDAHEEA-AQPGTVYLFGKVPLQDR--HLSCCAIVRGMQR 421
Query: 257 KIYLLPRSEHLKT----------------KE--PV---SIAQVYSEFDQIATQYKILDFK 295
+Y++PR T KE P+ + ++V +E + Q+++
Sbjct: 422 NVYVVPRKAVAGTDIAAAEAAAAADPAARKELLPLLHQAFSEVKAEVRGLLAQHRVTQMS 481
Query: 296 SRKIEKKYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLE 354
+ ++++YAF P VP +++ L+V+Y A PALP LSG TFS + GT S LE L L+
Sbjct: 482 MKPVKRQYAFEDPAVPHGTQWVLKVKYPATQPALPLGLSGTTFSALLGTNQSMLEALSLK 541
Query: 355 RKIKGPSWLEF--PEAEKFPSRISWCKYEVQCNQMEKIRS 392
R+I GP WL P +++SWCK EV+ +++ +
Sbjct: 542 RRIMGPCWLSIKHPRRVAAEAQVSWCKVEVEVAGHKEVTA 581
Score = 87.0 bits (214), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 33/41 (80%), Positives = 40/41 (97%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
Y+GGLVLEP+KG YD+F++L+DFNSLYPSIIQEYNICFTT+
Sbjct: 827 YAGGLVLEPRKGLYDRFVLLLDFNSLYPSIIQEYNICFTTV 867
Score = 78.2 bits (191), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Query: 631 KGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
+GREIL +T ++V++ + EVIYGDTDS+M+ D V K+G QIK E NK Y+ LE
Sbjct: 871 QGREILQSTVNVVQDSVGKEVIYGDTDSIMVYTASTDLAEVVKLGQQIKREVNKRYRLLE 930
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNGKMI 721
+++DGV+K MLLLKKKKYA++ + ++G +
Sbjct: 931 IEMDGVFKCMLLLKKKKYASVKVEVQADGSTV 962
>gi|164655413|ref|XP_001728836.1| hypothetical protein MGL_4003 [Malassezia globosa CBS 7966]
gi|159102722|gb|EDP41622.1| hypothetical protein MGL_4003 [Malassezia globosa CBS 7966]
Length = 970
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 205/409 (50%), Gaps = 59/409 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+ + L E Y++P
Sbjct: 392 KLMCLINYTEMA-RVTGVPFNYL---LSRGQQIKVISQLFRKAREDGYLIP--------- 438
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
A KG+G + Y G VL+PK+G+YDK + +DF SLYPSI+ +N+C+TT+
Sbjct: 439 -------AYKGEGGDEQ-YEGATVLDPKQGYYDKPVATLDFASLYPSIMMAHNLCYTTLV 490
Query: 538 -------VRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
+++++D D +T Y V G+LP ++ L+ +R+ K+ +K +
Sbjct: 491 DKHTIDRLKLVEDKDYVVTPNNNYFVCKTVRKGLLPDVLEALLAARKAAKSDLKN---ET 547
Query: 589 DLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL 646
D L D RQ ALK++ANS+YG G R ++ VTA GR+++ TK VE
Sbjct: 548 DPLRRAVLDGRQLALKVSANSVYGFTGATVGRLPCLEISMSVTAYGRQMIEETKRQVEKH 607
Query: 647 -----NYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVY 696
YE VIYGDTDS+M+ V++ + ++G + +K + K + L+ + +Y
Sbjct: 608 YTVKNGYEHDAVVIYGDTDSVMVKFGVSELEKAMQLGAEAAEFVSKSFVKPIRLEFEKIY 667
Query: 697 KYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
LL+ KK+YA L ++ + KM + KG++ VRRD +L + + ++L
Sbjct: 668 FPYLLINKKRYAGLYWTRPEHYDKM----DTKGIETVRRDNCRLVRTVIETCLRKML--- 720
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ ++ K++ +DL + ++ L I+K L KA K
Sbjct: 721 ------IDRDVRGAEDYTKQVISDLLQNKIDMSQLVISKALAKADYAAK 763
>gi|332374532|gb|AEE62407.1| unknown [Dendroctonus ponderosae]
Length = 227
Score = 126 bits (317), Expect = 6e-26, Method: Composition-based stats.
Identities = 60/98 (61%), Positives = 74/98 (75%), Gaps = 3/98 (3%)
Query: 1 MLILATFVPTTDNFSG-GVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
M++LATF P DN G D G+ +K ++DL D VG Y VLS IPGKGH+K+LTAG+GW
Sbjct: 50 MMVLATFFP--DNVEDLGSDFIGEFLKYTVDLADLVGLYFVLSGIPGKGHSKVLTAGIGW 107
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
A AEVIL+R L LWVGARGAEFDW YIQ L+S++ L+
Sbjct: 108 ATAEVILSRALLLWVGARGAEFDWIYIQKCLESSVLLV 145
>gi|109125666|ref|XP_001116065.1| PREDICTED: DNA polymerase delta catalytic subunit isoform 2 [Macaca
mulatta]
Length = 1327
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 121/414 (29%), Positives = 204/414 (49%), Gaps = 61/414 (14%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLL-HAFHEKSYVLP 468
L +Y+ ++++ L VL A+++ V G LS L G+ + LL A HE ++P
Sbjct: 513 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHE-GLLMP 571
Query: 469 DKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQE 528
+ EG E Y+G V+EP KG+YD I +DF+SLYPSI+
Sbjct: 572 -----VVRSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMA 613
Query: 529 YNICFTTI--P-----VRMLQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKA 579
+N+C+TT+ P + + +D I T E++ + V G+LP ++ L+ +R++ KA
Sbjct: 614 HNLCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFV-KTSVRKGLLPQILENLLSARKRAKA 672
Query: 580 LMKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
+ + +D L D RQ ALK++ANS+YG G + ++ VT GR+++
Sbjct: 673 ELAK---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIE 729
Query: 638 NTKSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ- 687
TK LVE + + +V+YGDTDS+M V+ +G + + +
Sbjct: 730 KTKQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSP 789
Query: 688 LELDIDGVYKYMLLLKKKKYAALSISKL--SNGKMICSQEIKGVDVVRRDWSQLASEAGK 745
+ L+ + VY LL+ KK+YA L S ++ +M C KG++ VRRD L +
Sbjct: 790 IRLEFEKVYFPYLLISKKRYAGLLFSSRPDTHDRMDC----KGLEAVRRDNCPLVANLVT 845
Query: 746 FVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H + + +DL + ++ L ITK+LT+A
Sbjct: 846 ASLRRLL---------IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRA 890
>gi|15922397|ref|NP_378066.1| DNA polymerase II [Sulfolobus tokodaii str. 7]
gi|342306638|dbj|BAK54727.1| DNA polymerase [Sulfolobus tokodaii str. 7]
Length = 781
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 171/330 (51%), Gaps = 44/330 (13%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
+P I++T + G L + M R E+LL+ ++ + ++P+K+
Sbjct: 357 IPFGIELTRISGLPLDQLSMASVGHRVEWLLMREAYKYNELIPNKE-------------- 402
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R+ +Y GGLV+ P G ++ + ++DF+S+YPSI+ +YNI T+ ++
Sbjct: 403 ----EREYESYEGGLVISPLPGIHED-VYVLDFSSMYPSIMIKYNIGPDTLVKGECENCW 457
Query: 546 ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 605
I+ + G+ + ++KL++ R++VK LM++ D + D RQ+ALK+ A
Sbjct: 458 ISPAGHKFRKDP--PGLYKNVLEKLIQERKEVKKLMEKTMDEYDKRVL-DARQRALKVMA 514
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN 665
N+ YG +G+ +R++++ A VTA GR+I+ + + + + VIYGDTDS+ +
Sbjct: 515 NAFYGYMGWLGARWYSKEGAEAVTAWGRQIISESAKIAKEKGFTVIYGDTDSIFV----- 569
Query: 666 DYDSVFKIGNQIKSECNKLYKQ--LELDIDGVYKYMLLLK-KKKYAALSISKLSNGKMIC 722
K G I S ++ + LE+ ID +YK + + KK+YA L+ +GK+
Sbjct: 570 ------KGGGDINSLITEISSKFGLEIKIDKIYKRVFFTENKKRYAGLT----EDGKI-- 617
Query: 723 SQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
+I G + VR DW LA + VI IL
Sbjct: 618 --DIVGFEAVRGDWCDLAKQVQTNVIELIL 645
>gi|301764899|ref|XP_002917866.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase delta catalytic
subunit-like [Ailuropoda melanoleuca]
Length = 1106
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 167/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 581 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKT 640
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + + +D L D RQ ALK++
Sbjct: 641 PTGDEFV-KTSVRKGLLPQILENLLSARKRAKAELAK---ETDPLRRQVLDGRQLALKVS 696
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE+ N +V+YGDT
Sbjct: 697 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYGANAKVVYGDT 756
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + L+ + VY LL+ KK+YA L S
Sbjct: 757 DSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFPYLLISKKRYAGLLFSS 816
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 817 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPAGAVAH 863
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRA 890
>gi|324120744|dbj|BAJ78763.1| DNA polymerase delta catalytic subunit [Metylophorus sp. E-43]
Length = 1036
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 122/411 (29%), Positives = 190/411 (46%), Gaps = 64/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L G+ + LL EK +++P
Sbjct: 457 KLMCIINYMEMA----RVTGVALPSLLTRGQQIKVLSQLLRKTREKGFLMP--------- 503
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
A G G Y G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 504 -------AYHGTGGDDQ-YEGATVIEPRKGYYADPIATLDFSSLYPSIMMAHNLCYTTLL 555
Query: 537 ------PVRMLQDSDITTLCE-YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ + D T + Y V G+LP ++ L+++R++ KA +K +D
Sbjct: 556 QGGVKEKLDLSTDQYTKTPAQNYFVHKSVRKGLLPEILENLLDARKKAKADLKN---ETD 612
Query: 590 LLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-L 646
L + D RQ ALK++ANS+YG G + ++ VTA GR ++ T+ VE
Sbjct: 613 ELRKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAYGRSMIEQTRLEVEQKF 672
Query: 647 NYE--------VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYK 697
N E VIYGDTDS+M+ D +G + + K ++L+ + VY
Sbjct: 673 NIENGYKHDSVVIYGDTDSVMVRFGNKDLAECMDLGREAADHVSAKFLSPIKLEFEKVYY 732
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---D 753
LL+ KK+YA L ++ K+ C KG++ VRRD + L + + +IL D
Sbjct: 733 PYLLINKKRYAGLYWTRPDKYDKLDC----KGLETVRRDNAPLVANMMNSCLQKILINRD 788
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
Y+ KK+ DL V ++ L ITK+L K+ K
Sbjct: 789 PDGAVAYA------------KKVIADLLCNKVDISQLVITKELAKSDYAAK 827
>gi|52696275|pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From
Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
Length = 774
Score = 126 bits (317), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 173/346 (50%), Gaps = 42/346 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL LP+ Q++ + G L E+ LL +E++ + P+K +
Sbjct: 317 KVTYELGKEFLPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYERNELAPNKP---D 373
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+KE R++ +Y GG V EP++G ++ I+ +DF SLYPSII +N+ T
Sbjct: 374 EKE----------LARRRQSYEGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSS 588
+ ++ D+ C+ P G +PS + L+E R+++K MK +
Sbjct: 423 LNREGCKEYDVAPQVGHRFCKDFP------GFIPSLLGDLLEERQKIKKKMKATIDPIER 476
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE-ILLNTKSLVENLN 647
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GRE I + K + E
Sbjct: 477 KLL---DYRQRAIKILANSYYGYYGYARARWYCKECAESVTAWGREYITMTIKEIEEKYG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++VIY DTD + D ++V K + N KL LEL+ +G YK + KKK
Sbjct: 534 FKVIYSDTDGFFATIPGADAETVKKKAMEFLKYINAKLPGALELEYEGFYKRGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + GK+ +G+++VRRDWS++A E V+ +L
Sbjct: 594 YAVID----EEGKITT----RGLEIVRRDWSEIAKETQARVLEALL 631
>gi|261200399|ref|XP_002626600.1| DNA polymerase delta subunit [Ajellomyces dermatitidis SLH14081]
gi|239593672|gb|EEQ76253.1| DNA polymerase delta subunit [Ajellomyces dermatitidis SLH14081]
Length = 1106
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 190/381 (49%), Gaps = 60/381 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +FL L E+ V+P+ +N
Sbjct: 523 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFLSQLFRKALEQQLVIPNL---RN 573
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ E+ Y G V+EP + +YD I +DF SLYPSIIQ +N+C+TT
Sbjct: 574 ESTSEQ--------------YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTT 619
Query: 536 IPVRMLQDSD---------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ + D+ +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 620 LLKKSTIDTHQMKEGEDYIVTPNGDRFCTSKVRKGLLTQILEELLGARKRAK---KELAV 676
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G R P+A+ T+ GR+++ TK VE
Sbjct: 677 ETDPFKKAVLNGRQLALKISANSVYGLTGATVGRLPCLPIASSTTSYGRQMIEKTKEEVE 736
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDG 694
+ + +V+YGDTDS+M+ + D K+G + + K K ++L+ +
Sbjct: 737 AKFTIANGYSHDAKVVYGDTDSVMVKFGMQDLAEAMKLGREAADFVSAKFIKPIKLEFEK 796
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L ++ KM + KG++ VRRD ++ + V+ +IL
Sbjct: 797 VYFPYLLINKKRYAGLYWTRPDKYDKM----DTKGIETVRRDNCRMVQTVIETVLRKILI 852
Query: 754 E------QSYTDYSLDDRLQN 768
+ Q+Y ++ D LQN
Sbjct: 853 DRDVGAAQNYVKDTISDLLQN 873
>gi|116199119|ref|XP_001225371.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88178994|gb|EAQ86462.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 1104
Score = 126 bits (316), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 106/349 (30%), Positives = 172/349 (49%), Gaps = 44/349 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---------PVRMLQDSDI 546
Y G V++P K +YD I +DF SLYPSI+Q +N+C+TT+ ++ +D +
Sbjct: 576 YEGATVIDPIKNYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKKDIERWNLKKDEDYIV 635
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + + G+L +++L+ +R+Q K A P + L + RQ ALK+
Sbjct: 636 TPSGDMFVTSKQRKGLLAQILEELLSARKQAKRELAAETDPFKKAVL----NGRQLALKI 691
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGD 654
+ANS+YG G N + +A+ T+ GR+++ TK VEN + +VIYGD
Sbjct: 692 SANSVYGLTGATNGKLPCLEIASSTTSFGRQMIERTKQEVENRYNIANGYSHDAQVIYGD 751
Query: 655 TDSLMISCNVNDYDSVFKIG-NQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D ++G + + +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 752 TDSVMVKFGTTDLAEAMRLGEDASQFVSSKFVKPIKLEFEKVYFPYLLINKKRYAGLYWT 811
Query: 714 KLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
K + KM + KG++ VRRD L + V+ IL +D + E+
Sbjct: 812 KPEKHDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDRDVMGAQEY 858
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRR 821
+K DL + ++ L ITK LTK K Q + +R R+R
Sbjct: 859 VKDTIADLLQNKIDMSKLVITKALTKDDYAAK----QAHVELAQRMRKR 903
>gi|402906428|ref|XP_003916004.1| PREDICTED: DNA polymerase delta catalytic subunit [Papio anubis]
Length = 1107
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 118/413 (28%), Positives = 202/413 (48%), Gaps = 59/413 (14%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ L VL A+++ V G LS L G+ + LL + ++P
Sbjct: 513 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMP- 571
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
+ EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +
Sbjct: 572 ----VVRSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAH 614
Query: 530 NICFTTI--P-----VRMLQDSDITTLC--EYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
N+C+TT+ P + + +D I T E++ + V G+LP ++ L+ +R++ KA
Sbjct: 615 NLCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFV-KTSVRKGLLPQILENLLSARKRAKAE 673
Query: 581 MKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+ + +D L D RQ ALK++ANS+YG G + ++ VT GR+++
Sbjct: 674 LAK---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEK 730
Query: 639 TKSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-L 688
TK LVE + + +V+YGDTDS+M V+ +G + + + +
Sbjct: 731 TKQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPI 790
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKL--SNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746
L+ + VY LL+ KK+YA L S ++ +M C KG++ VRRD L +
Sbjct: 791 RLEFEKVYFPYLLISKKRYAGLLFSSRPDTHDRMDC----KGLEAVRRDNCPLVANLVTA 846
Query: 747 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H + + +DL + ++ L ITK+LT+A
Sbjct: 847 SLRRLL---------IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRA 890
>gi|58386582|ref|XP_314877.2| AGAP008757-PA [Anopheles gambiae str. PEST]
gi|55239955|gb|EAA10205.2| AGAP008757-PA [Anopheles gambiae str. PEST]
Length = 229
Score = 126 bits (316), Expect = 7e-26, Method: Composition-based stats.
Identities = 57/99 (57%), Positives = 75/99 (75%), Gaps = 2/99 (2%)
Query: 1 MLILATFVPTTDNFSGGV--DVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVG 58
ML+LATF P TD F+ G + + ++ S+DL+D++G VLS IPGKGH+K++TAG+G
Sbjct: 50 MLVLATFFPDTDTFTEGAPFNFIAEFLRCSVDLVDFLGLAFVLSRIPGKGHSKLITAGLG 109
Query: 59 WAGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
WA AEVIL+R L LWVGARGAEF W YIQ L+SN+ L+
Sbjct: 110 WATAEVILSRGLMLWVGARGAEFSWLYIQKCLESNVLLV 148
>gi|324120768|dbj|BAJ78775.1| DNA polymerase delta catalytic subunit [Ctenocephalides felis]
Length = 1002
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 121/411 (29%), Positives = 196/411 (47%), Gaps = 64/411 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G L L G+ + LL E Y++P
Sbjct: 423 KLMCIVNYMEMA----RVTGVPLGCLLTRGQQIKVVSQLLRKSKEAGYLMP--------- 469
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
G+G ++ Y G V+EP++G+Y + +DF SLYPSI+ +N+C+TT+
Sbjct: 470 -------TYSGQGSEEQ-YEGATVIEPRRGYYADPVSTLDFASLYPSIMMAHNLCYTTLI 521
Query: 537 -PVRM----LQDSDITTLCE--YLPEHQVDTGILPSEIKKLVESRRQVKALM---KQPNL 586
P + L D +T + V G+LP ++ L+ +R++ KA + K P
Sbjct: 522 QPGQKEKLGLTDDQVTRTPSNNLFVKSSVRKGLLPEILESLLSARKKAKADLRDEKDPFK 581
Query: 587 SSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-- 644
S L D RQ ALK++ANS+YG G R ++ VTA GR ++ TK VE
Sbjct: 582 RSVL----DGRQLALKISANSVYGFTGAQVGRLPCLEISGSVTAYGRTMIEQTKQEVERK 637
Query: 645 ---NLNYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVY 696
YE VIYGDTDS+M++ V + ++G + + K + ++L+ + VY
Sbjct: 638 YTIANGYESDAVVIYGDTDSVMVNFGVKSLERSMELGREAAEFVSQKFIRPIKLEFEKVY 697
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---D 753
LL+ KK+YA L ++ I + KG++ VRRD S L + + +IL D
Sbjct: 698 FPYLLINKKRYAGLYYTRTDKYDKI---DCKGIETVRRDNSPLVANMMNMCLQKILVHRD 754
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+ +Y+ K++ +DL + ++ L ITK+L+K+ K
Sbjct: 755 PEGAVEYA------------KQVISDLLCNKIDISQLVITKELSKSDYAAK 793
>gi|268324246|emb|CBH37834.1| DNA polymerase [uncultured archaeon]
Length = 829
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 107/382 (28%), Positives = 179/382 (46%), Gaps = 47/382 (12%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNE-FLLLHAFHEKSYVLPDKQYGKNKKEGEETG 483
+LPL I+++ + G L GR + E FL AF V P
Sbjct: 376 MLPLQIELSKMVGYPLDELAKMGRGRQVEAFLTAEAFKRGELVPP--------------- 420
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQ 542
KG + + GG VL P+KG ++ +I +DF+S+YP+I+ +NI T + +
Sbjct: 421 -----KGGSEKTFEGGFVLPPEKGLHED-VIALDFSSMYPTIMISFNISPDTFVAATEVG 474
Query: 543 DSDITTLCEY-LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 601
D ++ E + G + L+ RR +KA MK + +SD DI+Q+++
Sbjct: 475 DEEVYVAPEVGYAFRKAPDGFFKRIMSDLITRRRAIKADMKSYDKASDEYRLLDIQQQSV 534
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMIS 661
K+ NS YG G+ ++F+ + A TA GR + + E ++VIYGDTDS+ +
Sbjct: 535 KILTNSFYGYTGWSAAKFYKRECAEATTAWGRHFIKRAVKMAEESGFKVIYGDTDSIFVK 594
Query: 662 CNV----NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLL-KKKKYAALSISKLS 716
+ + ++ + +I + K LEL + +K + KKK+YAAL+
Sbjct: 595 FPLEVEGDRKKAILEKAEEISARITKELP-LELALQDFFKTIFFTGKKKRYAALT----D 649
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 776
G+++ ++G++V R DW +LA E VI IL D + ++K +
Sbjct: 650 TGEIV----VRGLEVRRGDWCELAKEVQTEVIELILR---------DKDPEKAMAYVKSV 696
Query: 777 RTDLDNGFVPLTLLEITKQLTK 798
DL+ G +P+ L I K LT+
Sbjct: 697 IKDLERGNLPVHKLIIYKTLTR 718
>gi|38201798|gb|AAO46909.1| DNA polymerase [Sus barbatus lymphotropic herpesvirus 1]
Length = 1000
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 170/358 (47%), Gaps = 70/358 (19%)
Query: 442 RTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLV 501
R + G+ R LL + + Y+LP Q EG Y G V
Sbjct: 514 RVITDGQQIRVFSCLLASAKSRGYILPVSQTAN--FEG----------------YQGATV 555
Query: 502 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR-------MLQDSDI-TTLCEYL 553
+ P GFY+ ++++DF SLYPSIIQ +N+C++T+ L++SD T +
Sbjct: 556 ISPLSGFYNTPVLVVDFASLYPSIIQAHNLCYSTLIHHEDLHKHPQLKESDYETFVISSG 615
Query: 554 PEHQVDTGILPSEIKKLVES----RRQVK---ALMKQPNLSSDLLMQYDIRQKALKLTAN 606
P H V I S + L+ + R+ ++ A P L + L D +Q A+K+T N
Sbjct: 616 PVHFVKKHISESLLSNLLTTWLAKRKTIRKELAACNDPKLKTIL----DKQQLAIKVTCN 671
Query: 607 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN------------------- 647
++YG G + +A VT +GR +L TK VENLN
Sbjct: 672 AVYGFTGVASGMLPCLKIAETVTTQGRAMLEKTKIFVENLNHTMLQAICYPLDIPLLPKD 731
Query: 648 ----YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQ-LELDIDGVYKYMLL 701
++V+YGDTDSL I+C ++V G+Q+ +KL+ ++L+ + V+ +LL
Sbjct: 732 VTMPFKVVYGDTDSLFINCPGYSTETVVAFGDQLAQHITDKLFTSPIKLESEKVFNCLLL 791
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
L KK+Y + LSN +++ +KGVD+VR+ E K V+ +L++++ D
Sbjct: 792 LTKKRYVGI----LSNDRIL----MKGVDLVRKTACTYVQETSKAVLDLVLNDETVRD 841
>gi|156093327|ref|XP_001612703.1| DNA polymerase delta catalytic subunit [Plasmodium vivax Sal-1]
gi|148801577|gb|EDL42976.1| DNA polymerase delta catalytic subunit, putative [Plasmodium vivax]
Length = 1096
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 104/328 (31%), Positives = 173/328 (52%), Gaps = 41/328 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-----VRMLQDSDITTL- 549
Y G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ + L+ D+T++
Sbjct: 579 YEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLVKNNAEIEGLKQEDVTSIQ 638
Query: 550 ----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKALKL 603
+++ + V GILP +++L+++R++VK L+K Q ++ M + RQ ALK+
Sbjct: 639 GKSNIKFV-KRSVKKGILPLIVEELIDARKKVKLLIKNEQNKITK---MVLNGRQLALKI 694
Query: 604 TANSMYGCLGFPN-SRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIYG 653
+ANS+YG G + + +A +T GR ++ TK VE N V+YG
Sbjct: 695 SANSVYGYTGAASGGQLPCLEVAVSITTLGRCMIDKTKETVEKYYSKSNGFEHNSTVVYG 754
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNK-LYKQLELDIDGVYKYMLLLKKKKYAALSI 712
DTDS+M+ N+ +G +K ++L+ + VY LLL KK+YA L
Sbjct: 755 DTDSVMVKFGTNNIAEAMALGKDAAQRISKEFLHPIKLEFEKVYCPYLLLNKKRYAGLLY 814
Query: 713 SKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+ + KM C KG++ VRRD+ L + + V++++L E++ LQ+ E
Sbjct: 815 TTPERHDKMDC----KGIETVRRDFCILIQQMMETVLNKLLIEKN---------LQSAIE 861
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ K DL + ++LL +TK L K
Sbjct: 862 YTKCKIKDLLTNNIDMSLLVVTKSLGKT 889
>gi|324500650|gb|ADY40299.1| DNA polymerase delta catalytic subunit [Ascaris suum]
Length = 1091
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 102/329 (31%), Positives = 169/329 (51%), Gaps = 43/329 (13%)
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTL 549
+ G V+EP +GFY I +DF SLYPS++ +NIC+TT+ + L++ D
Sbjct: 565 TFEGATVIEPIRGFYAVPIATLDFASLYPSVMIAHNICYTTLIQGQPSAQGLKEDDF--- 621
Query: 550 CEYLPEH------QVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKL 603
E P + V G+LP ++ L+ +R++ KA +K M + RQ ALK+
Sbjct: 622 -EVSPSNNRFVKANVRRGLLPEILEDLLSARKRAKADLKNEK-DPFRCMVLNGRQLALKI 679
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL------------NYEVI 651
+ANS+YG G + ++ VTA GR+++ TK+ VE + + +VI
Sbjct: 680 SANSVYGFTGATVGKLPCLQISQSVTAFGRQMIDFTKNTVEEIYKKGYLNGKCPCDAKVI 739
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAAL 710
YGDTDS+M+ V D ++G E +K ++ ++L+ + VY LL+ KK+YA L
Sbjct: 740 YGDTDSVMVKFGVKDIALAMELGQHAAVEVSKKFRSPIKLEFEKVYCPFLLINKKRYAGL 799
Query: 711 SISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI 769
++ + KM C KG++ VRRD L S+ + ++L L+ +
Sbjct: 800 YFTRPEKHDKMDC----KGLETVRRDNCPLVSKVLSACLEKML---------LEGDAKGA 846
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
EH KK+ +DL + ++ L I+K+LT+
Sbjct: 847 LEHAKKVISDLLCNRIDISELIISKELTR 875
>gi|194749801|ref|XP_001957325.1| GF10365 [Drosophila ananassae]
gi|190624607|gb|EDV40131.1| GF10365 [Drosophila ananassae]
Length = 1092
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 102/334 (30%), Positives = 170/334 (50%), Gaps = 41/334 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----------RMLQDSD 545
+ G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ + LQD
Sbjct: 566 FEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTREKLREQENLQDDQ 625
Query: 546 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 601
+ T Y + +V G+LP ++ L+ +R++ K +K + +D + D RQ AL
Sbjct: 626 VERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK---VETDPFKRKVLDGRQLAL 682
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIY 652
K++ANS+YG G + ++ VTA GR ++ TK+ VE+ N VIY
Sbjct: 683 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYESNALVIY 742
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M++ V + ++G + +K ++L+ + VY LL+ KK+YA L
Sbjct: 743 GDTDSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLY 802
Query: 712 ISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
++ + KM C KG++ VRRD S L + + ++L E+ D ++
Sbjct: 803 FTRPETYDKMDC----KGIETVRRDNSPLVANLMNTCLQKLLIERD-PDGAV-------- 849
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+ K++ DL + ++ L ITK+L K K
Sbjct: 850 AYAKQVIADLLCNRIDISHLVITKELAKTDYAAK 883
>gi|27452795|gb|AAO12301.1| DNA polymerase [Porcine lymphotropic herpesvirus 3]
gi|27452810|gb|AAO12315.1| DNA polymerase [Porcine lymphotropic herpesvirus 3]
Length = 1001
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 170/358 (47%), Gaps = 70/358 (19%)
Query: 442 RTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLV 501
R + G+ R LL + + Y+LP Q EG Y G V
Sbjct: 515 RVITDGQQIRVFSCLLASAKSRGYILPVSQTAN--FEG----------------YQGATV 556
Query: 502 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR-------MLQDSDI-TTLCEYL 553
+ P GFY+ ++++DF SLYPSIIQ +N+C++T+ L++SD T +
Sbjct: 557 INPLSGFYNTPVLVVDFASLYPSIIQAHNLCYSTLIHHEDLHKHPQLKESDYETFVISSG 616
Query: 554 PEHQVDTGILPSEIKKLVES----RRQVK---ALMKQPNLSSDLLMQYDIRQKALKLTAN 606
P H V I S + L+ + R+ ++ A P L + L D +Q A+K+T N
Sbjct: 617 PVHFVKKHISESLLSNLLTTWLAKRKTIRKELAACNDPKLKTIL----DKQQLAIKVTCN 672
Query: 607 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN------------------- 647
++YG G + +A VT +GR +L TK VENLN
Sbjct: 673 AVYGFTGVASGMLPCLKIAETVTTQGRAMLEKTKIFVENLNHTMLQAICYPLDIPLLPKD 732
Query: 648 ----YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQ-LELDIDGVYKYMLL 701
++V+YGDTDSL I+C ++V G+Q+ +KL+ ++L+ + V+ +LL
Sbjct: 733 VTMPFKVVYGDTDSLFINCPGYSTETVVAFGDQLAQHITDKLFTSPIKLESEKVFNCLLL 792
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTD 759
L KK+Y + LSN +++ +KGVD+VR+ E K V+ +L++++ D
Sbjct: 793 LTKKRYVGI----LSNDRIL----MKGVDLVRKTACTYVQETSKAVLDLVLNDETVRD 842
>gi|367016721|ref|XP_003682859.1| hypothetical protein TDEL_0G02810 [Torulaspora delbrueckii]
gi|359750522|emb|CCE93648.1| hypothetical protein TDEL_0G02810 [Torulaspora delbrueckii]
Length = 1094
Score = 126 bits (316), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 157/300 (52%), Gaps = 33/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSD--I 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ +++ Q+ D I
Sbjct: 584 YEGATVIEPIRGYYDIPIATLDFNSLYPSIMMAHNLCYTTLCNKATVDRMKLKQEEDYII 643
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKALKLT 604
T +Y ++ GILP + +L+ +R++ K +K + D+L + RQ ALK++
Sbjct: 644 TPNGDYFVTSKLRRGILPIILDELISARKRAKKDLKNEKDPFKRDVL---NGRQLALKIS 700
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 655
ANS+YG G + +++ VT+ GRE+++ TK VE + V+YGDT
Sbjct: 701 ANSVYGFTGATVGKLPCLAISSSVTSFGREMIMLTKKSVEEKYCVKNGFKHDAVVVYGDT 760
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ ND +G + + + L+K + L+ + Y LL+ KK+YA L +
Sbjct: 761 DSVMVKFGTNDLKEAMDLGAEAAAYVSTLFKHPINLEFEKAYFPFLLINKKRYAGLFWTS 820
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ------SYTDYSLDDRLQN 768
+ + KG+ VRRD L S V+ +IL ++ ++ ++DD L N
Sbjct: 821 PEKYDKL---DQKGLASVRRDSCPLVSIVMNKVLKRILIQRDVDGALAFVKKTIDDILHN 877
>gi|94468712|gb|ABF18205.1| conserved membrane protein [Aedes aegypti]
Length = 229
Score = 126 bits (316), Expect = 7e-26, Method: Composition-based stats.
Identities = 58/99 (58%), Positives = 76/99 (76%), Gaps = 2/99 (2%)
Query: 1 MLILATFVPTTDNFSG--GVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVG 58
ML+LATF P TD+F+G ++ + ++ S+DL+D +G VLS IPGKGH+K++TAG+G
Sbjct: 50 MLVLATFFPDTDSFTGEGQFNLIAEFLRCSVDLVDLLGLAFVLSKIPGKGHSKLITAGLG 109
Query: 59 WAGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
WA AEVIL+R L LWVGARGAEF W YIQ L+SNI L+
Sbjct: 110 WATAEVILSRGLMLWVGARGAEFSWIYIQRCLESNILLV 148
>gi|10140935|ref|NP_065512.1| DNA Polymerase [Alcelaphine herpesvirus 1]
gi|82046321|sp|O36363.1|DPOL_ALHV1 RecName: Full=DNA polymerase catalytic subunit
gi|2337976|gb|AAC58060.1| DNA Polymerase [Alcelaphine herpesvirus 1]
Length = 1026
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 167/350 (47%), Gaps = 69/350 (19%)
Query: 442 RTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLV 501
R L G+ R LL A E+ Y+LP G +EG Y G V
Sbjct: 545 RVLSDGQQIRVFTCLLAAAQERDYILPMPVTGS--QEG----------------YQGATV 586
Query: 502 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IP-VRMLQDSDITTL----- 549
+ P GFY+ ++++DF SLYPSIIQ +N+C++T +P L +D T
Sbjct: 587 INPISGFYNTPVLVVDFASLYPSIIQAHNLCYSTLIKQQDLPKFTNLTANDYETFMISGG 646
Query: 550 -CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKALKLTAN 606
++ +H+ ++ +L S +K + R+ +K ++Q D M+ D +Q A+K+T N
Sbjct: 647 PVHFVKKHKTES-LLASLLKTWLAKRKSIKKELEQ---CQDAKMKTILDKQQLAIKVTCN 702
Query: 607 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYE----------------- 649
S+YG G + +A VT +GR +L TK VEN+ E
Sbjct: 703 SVYGFTGVASGMLPCLMIAETVTLQGRTMLEKTKQFVENVTVEYLQKICNFEVQCLPQHP 762
Query: 650 -----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY--KQLELDIDGVYKYMLLL 702
V+YGDTDSL I C D+V K G+ + S + + ++L+ + V+K ++LL
Sbjct: 763 NPKFRVVYGDTDSLFIKCEGFAMDTVIKFGDALASHTSSVLFASPIKLESEKVFKCLMLL 822
Query: 703 KKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
KK+Y + LSN K++ +KGVD+VR+ E + V+ +L
Sbjct: 823 TKKRYVGI----LSNNKIL----MKGVDLVRKTACVYVQEVTRAVLELLL 864
>gi|62088700|dbj|BAD92797.1| polymerase (DNA directed), delta 1, catalytic subunit 125kDa
variant [Homo sapiens]
Length = 1011
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 121/413 (29%), Positives = 201/413 (48%), Gaps = 59/413 (14%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLL-HAFHEKSYVLP 468
L +Y+ ++++ L VL A+++ V G LS L G+ + LL A HE ++P
Sbjct: 515 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHE-GLLMP 573
Query: 469 DKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQE 528
K EG E Y+G V+EP KG+YD I +DF+SLYPSI+
Sbjct: 574 -----VVKSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMA 615
Query: 529 YNICFTTI--P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
+N+C+TT+ P + + +D I T + + V G+LP ++ L+ +R++ KA
Sbjct: 616 HNLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAE 675
Query: 581 MKQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+ + +D L D RQ ALK++ANS+YG G + ++ VT GR+++
Sbjct: 676 LAK---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEK 732
Query: 639 TKSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-L 688
TK LVE + + +V+YGDTDS+M V+ +G + + + +
Sbjct: 733 TKQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPI 792
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKF 746
L+ + VY LL+ KK+YA L S + +M C KG++ VRRD L +
Sbjct: 793 RLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTA 848
Query: 747 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H + + +DL + ++ L ITK+LT+A
Sbjct: 849 SLRRLL---------IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRA 892
>gi|354548476|emb|CCE45212.1| hypothetical protein CPAR2_702240 [Candida parapsilosis]
Length = 1080
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 108/347 (31%), Positives = 176/347 (50%), Gaps = 41/347 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM------LQDSDITTL 549
+ G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT+ R L++ D T
Sbjct: 558 FEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNRNSIKAFDLKEEDYTKT 617
Query: 550 C--EYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKALKLTA 605
+Y GILP+ + +L+ +R++ K +K + D+L + RQ ALK++A
Sbjct: 618 PNGDYFVHADKKKGILPTILNELLTARKKAKTDLKNEKDPFKKDVL---NGRQLALKISA 674
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + +++ VTA GRE++ TK+ V+ + VIYGDTD
Sbjct: 675 NSVYGFTGATVGKLPCLAISSSVTAFGREMIEKTKNEVQERYSKKNGYPYDAHVIYGDTD 734
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D + K+G + + + K ++L+ + VY LL+ KK+YA L ++
Sbjct: 735 SVMVKFGYQDLKTCMKLGEEAANYVSTKFQNPIKLEFEKVYFPYLLINKKRYAGLYWTRP 794
Query: 716 SN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
KM + KG++ VRRD +L V+ IL+E++ D+ Q +K
Sbjct: 795 DKFDKM----DTKGIETVRRDNCRLVQNVITKVLEFILEERNV------DKAQRF---VK 841
Query: 775 KIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRR 821
+ DL V L+ L ITK +K K Q + R R+R
Sbjct: 842 QTIADLLQNRVDLSQLVITKAYSKHDYSAK----QAHVELAERMRKR 884
>gi|255716712|ref|XP_002554637.1| KLTH0F09966p [Lachancea thermotolerans]
gi|238936020|emb|CAR24200.1| KLTH0F09966p [Lachancea thermotolerans CBS 6340]
Length = 1095
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 164/318 (51%), Gaps = 35/318 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSD--I 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ +++ +D + I
Sbjct: 585 YEGATVIEPIRGYYDLPIATLDFNSLYPSIMMAHNLCYTTLASKTTVETLKLKKDEEYII 644
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKALKLT 604
T +Y +V +GILP + +L+ +R++ K +K + D+L + RQ ALK++
Sbjct: 645 TPNGDYFVTSKVRSGILPEILYELINARKRAKNDLKAEKDPFKRDVL---NGRQLALKIS 701
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 655
ANS+YG G + +++ VT+ GR ++ TK VE + V+YGDT
Sbjct: 702 ANSVYGFTGATVGKLPCLAISSSVTSFGRTMIEKTKEAVEEKYSLKNGFKHDAVVVYGDT 761
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ +D ++G + + + L+K + L+ + Y LL+ KK+YA L
Sbjct: 762 DSVMVKFGTHDLAEAMELGTEAAAYVSSLFKNPINLEFEKAYFPYLLINKKRYAGL---Y 818
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
+N + KG+ VRRD L S V+ +IL D +D L+ I E ++
Sbjct: 819 WTNPNKYDKLDQKGLASVRRDSCPLVSIVMNKVLKKIL-----IDRDVDGALKFIKEIIE 873
Query: 775 KI---RTDLDNGFVPLTL 789
+I R D+ + TL
Sbjct: 874 EILHNRADISKLIISKTL 891
>gi|322693697|gb|EFY85548.1| DNA polymerase delta catalytic subunit [Metarhizium acridum CQMa
102]
Length = 1104
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 165/326 (50%), Gaps = 39/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQDSDITTLCEYL 553
Y G V+EP +G+YD I +DF SLYPSIIQ +N+C+TT+ ++++ + +Y+
Sbjct: 576 YEGATVIEPVRGYYDVPIATLDFASLYPSIIQAHNLCYTTLVKDKKLIEKFGLVKDEDYI 635
Query: 554 PEHQVDT--------GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKL 603
DT G+L +++L+ +R+Q K + Q +D + + RQ ALK+
Sbjct: 636 VTPNGDTFVTTKQRKGLLAQILEELLTARKQAKRELAQ---ETDPFKKAVLNGRQLALKI 692
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + +A+ T+ GR+++ TK VE + +VIYGD
Sbjct: 693 SANSVYGLTGATTGKLPCLEIASSTTSFGRQMIERTKDEVEKKYNIANGYTHDAQVIYGD 752
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D K+G + +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 753 TDSVMVKFGTKDLAEAMKLGEEASHYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT 812
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ KM + KG++ VRRD L + V+ IL +D + E+
Sbjct: 813 RPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDRDVSGAQEY 859
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K+ +L V ++ L ITK LTK
Sbjct: 860 VKETIANLLQNKVDMSKLVITKALTK 885
>gi|10799869|emb|CAC12847.1| DNA polymerase [Pyrococcus sp. ST700]
Length = 759
Score = 126 bits (316), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 111/392 (28%), Positives = 191/392 (48%), Gaps = 50/392 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q+ + G + E+ LL +E++ + P+K +
Sbjct: 317 KVTYELGKEFFPMEAQLARLVGQPVWDVSRSSTGNLVEWFLLRKAYERNELAPNKP---D 373
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+KE E+ R + +Y GG V EP+KG ++ I+ +DF SLYPSII +N+ T
Sbjct: 374 EKEYEK---------RLRESYEGGYVKEPEKGLWEG-IVSLDFRSLYPSIIITHNVSPDT 423
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSS 588
+ D C+ P G +PS + L+E R+++K MK+ +
Sbjct: 424 LNREGCGKYDEAPEVGHRFCKDFP------GFIPSLLGDLLEERQKIKKRMKESKDPIEK 477
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNY 648
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GR+ + + +E +
Sbjct: 478 KLL---DYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGRQYIELVRRELEERGF 534
Query: 649 EVIYGDTDSLMISC-NVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
+V+Y DTD L + +++ + + + + N KL LEL+ +G Y + KKK
Sbjct: 535 KVLYIDTDGLYATIPGEKNWEEIKRKALEFVNYINSKLPGILELEYEGFYTRGFFVTKKK 594
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRL 766
YA + GK+I +G+++VRRDWS++A E V+ IL + +
Sbjct: 595 YALID----EEGKIIT----RGLEIVRRDWSEIAKETQAKVLEAILKHGN---------V 637
Query: 767 QNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+ + +K++ L N +P+ L I +Q+T+
Sbjct: 638 EEAVKIVKEVTEKLSNYEIPVEKLVIYEQITR 669
>gi|27806073|ref|NP_776852.1| DNA polymerase delta catalytic subunit [Bos taurus]
gi|118838|sp|P28339.1|DPOD1_BOVIN RecName: Full=DNA polymerase delta catalytic subunit
gi|162974|gb|AAA30493.1| DNA polymerase-delta catalytic-subunit [Bos taurus]
Length = 1106
Score = 125 bits (315), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 167/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 580 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKT 639
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + + +D L D RQ ALK++
Sbjct: 640 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAK---ETDPLRRQVLDGRQLALKVS 695
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G R ++ VT GR+++ TK LVE + + +V+YGDT
Sbjct: 696 ANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAKVVYGDT 755
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + L+ + VY LL+ KK+YA L S
Sbjct: 756 DSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 815
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 816 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPSGAVAH 862
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 863 AQDVISDLLCNRIDISQLVITKELTRA 889
>gi|324120698|dbj|BAJ78740.1| DNA polymerase delta catalytic subunit [Mnais pruinosa pruinosa]
Length = 1095
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 117/406 (28%), Positives = 190/406 (46%), Gaps = 66/406 (16%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + LL EK +V+P G +
Sbjct: 515 KLMCIINYMEMA----RVTGVPLSCLLTRGQQIKVVSQLLRKAKEKDFVIPTYSGGGQDE 570
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+ + G V+EP +G+Y I +DF+SLYPSI+ +N+C+TT
Sbjct: 571 Q-----------------FEGATVIEPLRGYYSDPIATLDFSSLYPSIMMAHNLCYTT-- 611
Query: 538 VRMLQ------------DSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
+LQ D T Y V G+LP ++ L+ +R++ K +K+
Sbjct: 612 --LLQPGSKEKLGLSPEDYVQTPAGNYFVRQSVRKGLLPEILENLLSARKKAKDDLKE-- 667
Query: 586 LSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
+D L + D RQ ALK++ANS+YG G + ++ VTA GR ++ TK V
Sbjct: 668 -ETDPLRRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAFGRTMIEQTKQEV 726
Query: 644 E---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDID 693
E + + VIYGDTDS+M+ V + +G + +K K ++L+ +
Sbjct: 727 ETKYCVARGYSHDAVVIYGDTDSVMVKFGVKSLEEAMALGREAAEYVSSKFVKPIKLEFE 786
Query: 694 GVYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
VY LL+ KK+YA L ++ KM C KG++ VRRD L + + ++L
Sbjct: 787 KVYFPYLLINKKRYAGLYFTRPDKYDKMDC----KGIETVRRDNCPLVANMMNTCLQKLL 842
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
E+ D ++ + K++ DL + ++ L +TK+L K
Sbjct: 843 IERD-PDGAV--------AYAKQVIADLLCNRIDISQLVVTKELAK 879
>gi|73946992|ref|XP_851285.1| PREDICTED: DNA polymerase delta catalytic subunit isoform 1 [Canis
lupus familiaris]
Length = 1107
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 167/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 581 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTKDQFIKT 640
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + + +D L D RQ ALK++
Sbjct: 641 PTGDEFV-KTSVRKGLLPQILENLLSARKRAKAELAK---ETDPLRRQVLDGRQLALKVS 696
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE + N +V+YGDT
Sbjct: 697 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSANAKVVYGDT 756
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + L+ + VY LL+ KK+YA L S
Sbjct: 757 DSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFPYLLISKKRYAGLLFSS 816
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 817 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPAGAVAH 863
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRA 890
>gi|346469715|gb|AEO34702.1| hypothetical protein [Amblyomma maculatum]
Length = 229
Score = 125 bits (315), Expect = 9e-26, Method: Composition-based stats.
Identities = 57/99 (57%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 1 MLILATFVPTTDNFS-GGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
MLILATF P D S GG DV G+ +K ++DL D VG +LV++ + GKG K L AG+GW
Sbjct: 50 MLILATFFPPGDVSSVGGFDVLGEFLKSTVDLADLVGLHLVMTKVAGKGETKFLVAGLGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLID 98
A AE+++TRF+ LWVGARG EFDW+Y+Q S DSNI L++
Sbjct: 110 ASAELLMTRFVPLWVGARGMEFDWRYVQLSFDSNISLVN 148
>gi|367024855|ref|XP_003661712.1| hypothetical protein MYCTH_2301456 [Myceliophthora thermophila ATCC
42464]
gi|347008980|gb|AEO56467.1| hypothetical protein MYCTH_2301456 [Myceliophthora thermophila ATCC
42464]
Length = 1081
Score = 125 bits (315), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 164/326 (50%), Gaps = 40/326 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---------PVRMLQDSDI 546
Y G V+EP + +YD I +DF SLYPSI+Q +N+C+TT+ ++ +D +
Sbjct: 578 YEGATVIEPIRNYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKKDVEKWNLKKDEDYIV 637
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + + G+L +++L+ +R+Q K A P + L + RQ ALK+
Sbjct: 638 TPSGDMFVTTKQRKGLLAQILEELLAARKQAKRELAAETDPFKKAVL----NGRQLALKI 693
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G N + +A+ T GR+++ TK VE + + +VIYGD
Sbjct: 694 SANSVYGLTGATNGKLPCLEIASSTTGFGRQMIEKTKQEVEKRYTIANGYSHDAQVIYGD 753
Query: 655 TDSLMISCNVNDYDSVFKIG-NQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D K+G + + +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 754 TDSVMVKFGTTDLAEAMKLGEDASQYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT 813
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ KM + KG++ VRRD LA + V+ IL +D + E+
Sbjct: 814 RPDRYDKM----DTKGIETVRRDNCLLAQTVIEKVLRMIL---------IDRDVSGAQEY 860
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K +DL + ++ L ITK LTK
Sbjct: 861 VKDTISDLLQNKIDMSKLVITKALTK 886
>gi|154276096|ref|XP_001538893.1| DNA polymerase delta catalytic subunit [Ajellomyces capsulatus
NAm1]
gi|150413966|gb|EDN09331.1| DNA polymerase delta catalytic subunit [Ajellomyces capsulatus
NAm1]
Length = 1086
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/381 (29%), Positives = 189/381 (49%), Gaps = 60/381 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P+ +N
Sbjct: 503 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQQLVIPNL---RN 553
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ E+ Y G V+EP + FYD I +DF SLYPSIIQ +N+C+TT
Sbjct: 554 ESTSEQ--------------YEGATVIEPIRDFYDVPIATLDFASLYPSIIQAHNLCYTT 599
Query: 536 IPVRMLQDSD---------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ + D+ +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 600 LLKKSTIDAHQMKEGEDYIVTPNGDRFCTSKVRKGLLTQILEELLGARKRAK---KELAV 656
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 657 ETDPFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKEEVE 716
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ + +V+YGDTDS+M+ + D K+G + +K ++L+ +
Sbjct: 717 AKYTIANGYSHDAKVVYGDTDSVMVKFGMKDLAEAMKLGQEAADYVSSKFINPIKLEFEK 776
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +K KM + KG++ VRRD ++ + V+ +IL
Sbjct: 777 VYFPYLLINKKRYAGLYWTKPDKYDKM----DTKGIETVRRDNCRMVQTVIETVLRKILI 832
Query: 754 E------QSYTDYSLDDRLQN 768
+ QSY ++ D LQN
Sbjct: 833 DRDVDGAQSYVKDTISDLLQN 853
>gi|332687549|emb|CBZ41215.1| catalytic subunit of DNA polymerase delta [Saccharomyces uvarum]
gi|332687551|emb|CBZ41216.1| catalytic subunit of DNA polymerase delta [Saccharomyces uvarum]
gi|332687553|emb|CBZ41217.1| catalytic subunit of DNA polymerase delta [Saccharomyces bayanus]
Length = 1097
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 153/301 (50%), Gaps = 35/301 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP---------VRMLQDSDI 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ ++ +D I
Sbjct: 587 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKGTVERLNFKLDEDYVI 646
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM---KQPNLSSDLLMQYDIRQKALKL 603
T +Y + GILP + +L+ +R++ K + K P D+L + RQ ALK+
Sbjct: 647 TPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEKDP-FKRDVL---NGRQLALKI 702
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGD 654
+ANS+YG G + +++ VTA GR ++L TK+ V+ + V+YGD
Sbjct: 703 SANSVYGFTGATVGKLPCLAISSSVTAYGRTMILKTKNAVQEKYCIKNGYKHDAVVVYGD 762
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D +G + + L+KQ + L+ + Y LL+ KK+YA L
Sbjct: 763 TDSVMVKFGTADLKEAMDLGTEAAKYVSTLFKQPINLEFEKAYFPYLLINKKRYAGLF-- 820
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ------SYTDYSLDDRLQ 767
+N + KG+ VRRD L S V+ +IL E+ ++ ++DD L
Sbjct: 821 -WTNPDHFDKLDQKGLASVRRDSCSLVSIVMNKVLKKILIERNVDGALTFVRETIDDILH 879
Query: 768 N 768
N
Sbjct: 880 N 880
>gi|401407254|ref|XP_003883076.1| DNA polymerase, related [Neospora caninum Liverpool]
gi|325117492|emb|CBZ53044.1| DNA polymerase, related [Neospora caninum Liverpool]
Length = 1219
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 115/391 (29%), Positives = 183/391 (46%), Gaps = 52/391 (13%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
++++ V G L+ L G+ + LL E +Y++P K+ G
Sbjct: 650 VEMSRVTGTPLNFLLTRGQQIKVTAQLLRKCKELNYLVP-----VVKRTG---------- 694
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM----LQDSD 545
G Y G VLEPKKGFYDK I +DF SLYPSI+ +NIC++T+ + + D
Sbjct: 695 GDNSVQYEGATVLEPKKGFYDKPIATLDFASLYPSIMIAHNICYSTLVAASEAHKMTNPD 754
Query: 546 ITTLCEYLPEH-----QVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQ 598
T+ LP H V G+LP +++L+ +R KA K+ + D + + + RQ
Sbjct: 755 DVTVTTTLPPHKFVKAHVRRGVLPMIVEELIAAR---KAARKEMAAAKDEMTKQVLNGRQ 811
Query: 599 KALKLTANSM-YGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NY 648
ALK++ANS+ + +A +T GR+++ T+ VE + N
Sbjct: 812 LALKISANSVYGYTGTTTGGQLPCLEVATTITCFGRDMIDFTRREVEKMFCKDKTRACNA 871
Query: 649 EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKY 707
VIYGDTDS+M+ K+G + + K K + L+ + VY LL+ KK+Y
Sbjct: 872 TVIYGDTDSVMVDFGDFSIAEAMKLGEEAAQALSAKFTKPIRLEFEKVYCPFLLMNKKRY 931
Query: 708 AALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
A L ++ I S KG++ VRRD+S L V+ ++L +D ++
Sbjct: 932 AGLLYTRPEKYDKIDS---KGIETVRRDFSLLVQTMADTVLRKML---------IDKDVE 979
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
E+ + +L + L+LL TK L K
Sbjct: 980 AAKEYTRTKVAELLQNKIDLSLLVQTKSLGK 1010
>gi|240147832|gb|ACS45152.1| POL1-like protein [Glomus etunicatum]
Length = 118
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 82/117 (70%), Gaps = 1/117 (0%)
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
R+ VK LM P S+ Q DI QKALKLTANSMYGCLGF NSRF+A+PLA L+T+KGR
Sbjct: 3 RKNVKKLMADPRESASY-AQVDILQKALKLTANSMYGCLGFTNSRFYAKPLAVLITSKGR 61
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
+IL +T L E L+ EVIYGDTDS+MI+ N ++ +IG +K NK K LE+
Sbjct: 62 DILQDTVDLAEKLSMEVIYGDTDSIMINTNTSEMQKASEIGKILKELANKRCKLLEI 118
>gi|240849295|ref|NP_001155831.1| transmembrane protein 147 [Acyrthosiphon pisum]
gi|239788687|dbj|BAH71012.1| ACYPI010168 [Acyrthosiphon pisum]
Length = 232
Score = 125 bits (315), Expect = 1e-25, Method: Composition-based stats.
Identities = 59/97 (60%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
MLILATF P + S + K S+DL D G Y++L SIPGKGHAK++TAG+GWA
Sbjct: 50 MLILATFFPANEA-SITTLSLSNFFKSSVDLADIAGIYIILQSIPGKGHAKVMTAGIGWA 108
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
GAE++LTRFL LWVGARG EFDWKY Q L+SNI L+
Sbjct: 109 GAEILLTRFLLLWVGARGTEFDWKYTQKCLESNINLM 145
>gi|254577417|ref|XP_002494695.1| ZYRO0A07524p [Zygosaccharomyces rouxii]
gi|238937584|emb|CAR25762.1| ZYRO0A07524p [Zygosaccharomyces rouxii]
Length = 1090
Score = 125 bits (315), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 155/300 (51%), Gaps = 33/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP---------VRMLQDSDI 546
Y G V+EP +G+YD I +DF+SLYPSI+ +N+C+TT+ +++ +D +
Sbjct: 580 YEGATVIEPIRGYYDIPIATLDFSSLYPSIMMAHNLCYTTLTSKSTVEKFNMKLDEDYIM 639
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 604
T +Y +V GILP+ +++L+ +R++ K +K D+L + RQ ALK++
Sbjct: 640 TPNGDYFVTSKVRRGILPTILEELIGARKRAKKDLKNETEPFRKDVL---NGRQLALKVS 696
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 655
ANS+YG G + +++ VT+ GR +++ TK VE + V+YGDT
Sbjct: 697 ANSVYGFTGATVGKLPCLAISSSVTSFGRNMIMLTKQAVEEKYSIKNGFKHDSLVVYGDT 756
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ D K+G + + + L+K + L+ + Y LL+ KK+YA L +
Sbjct: 757 DSVMVKFGTTDLKEAMKLGAEAAAYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTN 816
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS------YTDYSLDDRLQN 768
I + KG+ VRRD L S V+ +IL E++ + +DD L N
Sbjct: 817 PDKYDKI---DQKGLASVRRDSCPLVSIVMNKVLKKILIERNVEGALGFVKEIIDDILHN 873
>gi|284161393|ref|YP_003400016.1| DNA polymerase Pol2 [Archaeoglobus profundus DSM 5631]
gi|284011390|gb|ADB57343.1| DNA polymerase Pol2 [Archaeoglobus profundus DSM 5631]
Length = 783
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 114/391 (29%), Positives = 192/391 (49%), Gaps = 63/391 (16%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
L +LP+ +++ + L GR ++ ++ LL + + + P N E EE+
Sbjct: 334 LELLPMHYELSRMIRLPLDDVARLGRGKQVDYFLLSEAKKINEIAP------NPPEIEES 387
Query: 483 GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ 542
Y G VLEP +G ++ + +DF S+YPSI+ +NI T+ +
Sbjct: 388 -------------YEGAFVLEPARGLHEN-VACLDFASMYPSIMINFNISPDTLVKGECE 433
Query: 543 DSDITTLCEYLPE--HQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIR 597
D C PE H+ G +K L+E RR++K MK+ + S+ DI+
Sbjct: 434 D------CYVAPEVGHKFRKSPDGFFKRILKMLIEKRREMKRQMKELDPDSEDYKLLDIK 487
Query: 598 QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDS 657
Q+ LK+ NS YG G+ +R++ + A TA GR + + E++ +EV+YGDTDS
Sbjct: 488 QQTLKVLTNSFYGYTGWNLARWYCRECAEATTAWGRYFIKRAVKIAESMGFEVLYGDTDS 547
Query: 658 LMISCN-VNDYDSVFKIGNQIKSECNKLYK------QLELDIDGVYKYMLLLKKKKYAAL 710
L I N +N D ++ EC KL ++L+ID YK + ++KK+YA L
Sbjct: 548 LFIKKNKLNLKD--------LEKECLKLIDVISKELPIQLEIDEFYKAIFFVEKKRYAGL 599
Query: 711 SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
+ + +++ +KG++V R DW +LA + VI IL E++ D +L ++N+
Sbjct: 600 T----DDDRIV----VKGLEVRRGDWCELAKRVQREVIEIILRERN-PDKAL-KFVKNVI 649
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
E +K+ + L++ I K LTK P+
Sbjct: 650 EEIKEGKFKLEDYV-------IYKGLTKKPD 673
>gi|355712611|gb|AES04406.1| polymerase , delta 1, catalytic subunit 125kDa [Mustela putorius
furo]
Length = 585
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 166/326 (50%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDI-T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 60 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQRLGLTEDQFIKT 119
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + + +D L D RQ ALK++A
Sbjct: 120 PTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAK---ETDPLRRQVLDGRQLALKVSA 176
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE+ N +V+YGDTD
Sbjct: 177 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYGANAKVVYGDTD 236
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + + + + L+ + VY LL+ KK+YA L S
Sbjct: 237 SVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFTYLLISKKRYAGLLFSSR 296
Query: 716 --SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
++ +M C KG++ VRRD L + + ++L +D H
Sbjct: 297 PDTHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPAGAVAHA 343
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 344 QDVISDLLCNRIDISQLVITKELTRA 369
>gi|295661753|ref|XP_002791431.1| DNA polymerase delta catalytic subunit [Paracoccidioides sp.
'lutzii' Pb01]
gi|226279988|gb|EEH35554.1| DNA polymerase delta catalytic subunit [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1110
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 190/381 (49%), Gaps = 60/381 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P+ +N
Sbjct: 527 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQQLVIPNL---RN 577
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ E+ Y G V+EP + +YD I +DF SLYPSIIQ +N+C+TT
Sbjct: 578 EATSEQ--------------YEGATVIEPLRAYYDVPIATLDFASLYPSIIQAHNLCYTT 623
Query: 536 I---------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ ++ +D +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 624 LLKKSTIEAHGMKEGEDYIVTPNGDRFCTAKVRKGLLTQILEELLGARKRAK---KELAV 680
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 681 ETDPFKKAVLNGRQLALKVSANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKEEVE 740
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ + +V+YGDTDS+M+ D K+G + +K + ++L+ +
Sbjct: 741 AKYTIANGYSNDAQVVYGDTDSVMVKFGTKDLAEAMKLGQEAADYVSDKFIRPIKLEFEK 800
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +K KM + KG++ VRRD ++ + V+ +IL
Sbjct: 801 VYFPYLLINKKRYAGLYWTKPEKYDKM----DTKGIETVRRDNCRMVQTVIETVLKKILI 856
Query: 754 E------QSYTDYSLDDRLQN 768
E Q+Y ++ D LQN
Sbjct: 857 ERDVDGAQNYVKNTISDLLQN 877
>gi|321264115|ref|XP_003196775.1| delta DNA polymerase [Cryptococcus gattii WM276]
gi|317463252|gb|ADV24988.1| Delta DNA polymerase, putative [Cryptococcus gattii WM276]
Length = 1049
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 198/410 (48%), Gaps = 61/410 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+ + L + YV+P K
Sbjct: 470 KLMCFVNYTEMA-RVTGVPFNYL---LSRGQQIKVVSQLYRNAADAGYVIP-----ALKS 520
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG + Y G V+EP KGFYD I +DF SLYPSI+ +N+C+TT+
Sbjct: 521 EGSDE------------QYEGATVIEPSKGFYDVPIATLDFASLYPSIMMAHNLCYTTLL 568
Query: 538 -------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM---KQPN 585
+++++ D T ++ + G+LP ++ L+ +R++ K + K P
Sbjct: 569 DKGTIERLKLVEGQDYVHTPNNDFFATSKRRKGLLPHILENLLAARKRAKQDLKVEKDPF 628
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE- 644
+ L D RQ ALK++ANS+YG G + +++ VTA GR+++ TK VE
Sbjct: 629 KRAVL----DGRQLALKVSANSVYGFTGATVGKLPCLAISSSVTAYGRQMIELTKKEVEA 684
Query: 645 --------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGV 695
+ + +V+YGDTDS+M+ D + ++G + + K K ++L+ + V
Sbjct: 685 QYSMKNGYDHDAKVVYGDTDSVMVRFGCPDLPTAMRLGAEAADLVSGKFIKPIKLEFEKV 744
Query: 696 YKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
Y LL+ KK+YA L ++ KM + KG++ VRRD +L S + + ++L
Sbjct: 745 YFPYLLISKKRYAGLYWTRPEKYDKM----DTKGIETVRRDNCRLVSTVIETCLFKML-- 798
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ +++K DL + ++ L ITK L KA K
Sbjct: 799 -------IDRDVKGAEDYVKDTIADLLQNKIDMSQLVITKALAKADYAAK 841
>gi|405119357|gb|AFR94130.1| delta DNA polymerase [Cryptococcus neoformans var. grubii H99]
Length = 1059
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 118/410 (28%), Positives = 198/410 (48%), Gaps = 61/410 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N +A ++T V N L L G+ + L + YV+P K
Sbjct: 480 KLMCFVNYTEMA-RVTGVPFNYL---LSRGQQIKVVSQLYRNAADAGYVIP-----ALKS 530
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
EG + Y G V+EP KGFYD I +DF SLYPSI+ +N+C+TT+
Sbjct: 531 EGSDE------------QYEGATVIEPSKGFYDVPITTLDFASLYPSIMMAHNLCYTTLL 578
Query: 538 -------VRMLQDSDI--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA---LMKQPN 585
+++++ D T ++ + G+LP ++ L+ +R++ K + K P
Sbjct: 579 DRGTIERLKLVEGEDYVHTPNNDFFATSKRRKGLLPHILENLLAARKRAKQDLKIEKDPF 638
Query: 586 LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE- 644
+ L D RQ ALK++ANS+YG G + +++ VTA GR+++ TK VE
Sbjct: 639 KRAVL----DGRQLALKVSANSVYGFTGATIGKLPCLAISSSVTAYGRQMIELTKKEVEA 694
Query: 645 --------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGV 695
+ + +V+YGDTDS+M+ D + ++G + + K K ++L+ + V
Sbjct: 695 EYSMKNGYDHDAKVVYGDTDSVMVRFGCPDLPTAMRLGAEAADLVSGKFIKPIKLEFEKV 754
Query: 696 YKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
Y LL+ KK+YA L ++ KM + KG++ VRRD +L S + + ++L
Sbjct: 755 YFPYLLISKKRYAGLYWTRPEKYDKM----DTKGIETVRRDNCRLVSTVIETCLFKML-- 808
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+D ++ +++K DL + ++ L ITK L KA K
Sbjct: 809 -------IDRDVKGAEDYVKDTIADLLQNKIDMSQLVITKALAKADYAAK 851
>gi|324120684|dbj|BAJ78733.1| DNA polymerase delta catalytic subunit [Lepidocampa weberi]
Length = 1096
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 192/402 (47%), Gaps = 58/402 (14%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+MC +N + +A V G LS L G+ + +L ++ ++P Q
Sbjct: 520 KLMCIINYMEMA----RVTGVPLSSLLTRGQQVKVMSQILRKAKTQNLIVPTYQ------ 569
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
+KG + + G V+EP KG+Y+ I +DF+SLYPSI+ +N+C+TT+
Sbjct: 570 --------SKGSDEQ---FEGATVIEPVKGYYNVPIATLDFSSLYPSIMMAHNLCYTTL- 617
Query: 538 VRMLQDSDI-------TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 590
VR D ++ T + + G+LP ++ L+ +R++ K +K+ +D
Sbjct: 618 VRPGLDKNLNPTDYIRTPSGNLFVKSALRKGLLPDILENLLSARKKAKDDLKK---ETDP 674
Query: 591 LMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---- 644
+ D RQ ALK++ANS+YG G + ++ VTA GR ++ TK VE
Sbjct: 675 FKRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISQSVTAFGRTMIEFTKKEVEERYN 734
Query: 645 -----NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKY 698
+ +VIYGDTDS+M+ V +G + + K + + L+ + VY
Sbjct: 735 RSQGAEHDAQVIYGDTDSVMVKFGVQTVKEAMALGKEAAEYVSAKFVQPIRLEFEKVYFP 794
Query: 699 MLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
LL+ KK+YA L ++ + KM C KG++ VRRD L ++ + +IL
Sbjct: 795 YLLINKKRYAGLYFTRPEIHDKMDC----KGIETVRRDNCPLVAKLITTCLEKIL----- 845
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+D H +++ +DL V ++ L ITK+LTK
Sbjct: 846 ----IDRDPNGAKTHAQQVISDLLCNRVDISQLVITKELTKT 883
>gi|225555953|gb|EEH04243.1| DNA polymerase delta catalytic subunit [Ajellomyces capsulatus
G186AR]
Length = 1111
Score = 125 bits (314), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 189/381 (49%), Gaps = 60/381 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K+MC +N +A ++T V N L R ++ +F+ L E+ V+P+ +N
Sbjct: 528 KLMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQQLVIPNL---RN 578
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ E+ Y G V+EP + FYD I +DF SLYPSIIQ +N+C+TT
Sbjct: 579 ESTSEQ--------------YEGATVIEPIRDFYDVPIATLDFASLYPSIIQAHNLCYTT 624
Query: 536 IPVRMLQDSD---------ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ + D+ +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 625 LLKKSTIDAHQMKEGEDYIVTPNGDRFCTSKVRKGLLTQILEELLGARKRAK---KELAV 681
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 682 ETDPFKKAVLNGRQLALKISANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKEEVE 741
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ + +V+YGDTDS+M+ + D K+G + +K ++L+ +
Sbjct: 742 AKYTIANGYSHDAKVVYGDTDSVMVKFGMKDLAEAMKLGQEAADYVSSKFINPIKLEFEK 801
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L ++ KM + KG++ VRRD ++ + V+ +IL
Sbjct: 802 VYFPYLLINKKRYAGLYWTRPDKYDKM----DTKGIETVRRDNCRMVQTVIETVLRKILI 857
Query: 754 E------QSYTDYSLDDRLQN 768
+ QSY ++ D LQN
Sbjct: 858 DRDVDGAQSYVKDTISDLLQN 878
>gi|73535447|pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase
Mutant
Length = 774
Score = 125 bits (313), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 173/346 (50%), Gaps = 42/346 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL LP+ Q++ + G L E+ LL +E++ + P+K +
Sbjct: 317 KVTYELGKEFLPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYERNELAPNKP---D 373
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+KE R++ +Y GG V EP++G ++ I+ +DF SLYPSII +N+ T
Sbjct: 374 EKE----------LARRRQSYEGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSS 588
+ ++ D+ C+ P G +PS + L+E R+++K MK +
Sbjct: 423 LNREGCKEYDVAPQVGHRFCKDFP------GFIPSLLGDLLEERQKIKKKMKATIDPIER 476
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE-ILLNTKSLVENLN 647
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GRE I + K + E
Sbjct: 477 KLL---DYRQRAIKILANSYYGYYGYARARWYCKECAESVTAWGREYITMTIKEIEEKYG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++VIY DTD + D ++V K + N KL LEL+ +G Y+ + KKK
Sbjct: 534 FKVIYSDTDGFFATIPGADAETVKKKAMEFLKYINAKLPGALELEYEGFYERGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + GK+ +G+++VRRDWS++A E V+ +L
Sbjct: 594 YAVID----EEGKITT----RGLEIVRRDWSEIAKETQARVLEALL 631
>gi|296477407|tpg|DAA19522.1| TPA: DNA polymerase delta catalytic subunit [Bos taurus]
Length = 987
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 167/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 580 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKT 639
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + + +D L D RQ ALK++
Sbjct: 640 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAK---ETDPLRRQVLDGRQLALKVS 695
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G R ++ VT GR+++ TK LVE + + +V+YGDT
Sbjct: 696 ANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAKVVYGDT 755
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + L+ + VY LL+ KK+YA L S
Sbjct: 756 DSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 815
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 816 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPSGAVAH 862
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 863 AQDVISDLLCNRIDISQLVITKELTRA 889
>gi|363753924|ref|XP_003647178.1| hypothetical protein Ecym_5625 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890814|gb|AET40361.1| hypothetical protein Ecym_5625 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1092
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 154/300 (51%), Gaps = 33/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRML-----QDSDI 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ V L +D I
Sbjct: 582 YQGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKSTVARLNLKENEDYII 641
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 604
T +Y + GILP+ + +L+ +R++ K +K D+L + RQ ALK++
Sbjct: 642 TPNGDYFVTEKRRRGILPTILHELISARKRAKTDLKNETDPFRKDVL---NGRQLALKIS 698
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + +++ VT+ GR ++ TK VE + + VIYGDT
Sbjct: 699 ANSVYGFTGATVGKLPCLAISSSVTSFGRTMIEATKRAVEEKYTVKNGFSHDAVVIYGDT 758
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ D +G + + + L+K + L+ + VY LL+ KK+YA L ++
Sbjct: 759 DSVMVKFGKTDLQETMNLGAEAAAYVSSLFKHPINLEFEKVYFPYLLINKKRYAGLYWTR 818
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS------YTDYSLDDRLQN 768
+ + KG+ VRRD L S V+ IL +++ + ++DD LQN
Sbjct: 819 PEKHDKL---DQKGLASVRRDSCPLVSLVMNKVLRMILIDRNVPGALDFVRSTIDDVLQN 875
>gi|226289255|gb|EEH44767.1| DNA polymerase delta catalytic subunit [Paracoccidioides
brasiliensis Pb18]
Length = 1110
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 189/381 (49%), Gaps = 60/381 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K MC +N +A ++T V N L R ++ +F+ L E+ V+P+ +N
Sbjct: 527 KFMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQQLVIPNL---RN 577
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ E+ Y G V+EP + +YD I +DF SLYPSIIQ +N+C+TT
Sbjct: 578 EATSEQ--------------YEGATVIEPLRAYYDVPIATLDFASLYPSIIQAHNLCYTT 623
Query: 536 I---------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ ++ +D +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 624 LLKKSTIEAHGMKEGEDYIVTPNGDRFCTAKVRKGLLTQILEELLGARKRAK---KELAV 680
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 681 ETDPFKKAVLNGRQLALKVSANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKEEVE 740
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ + +V+YGDTDS+M+ D K+G + +K + ++L+ +
Sbjct: 741 AKYTIANGYSNDAQVVYGDTDSVMVKFGTKDLAEAMKLGQEAADYVSDKFIRPIKLEFEK 800
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +K KM + KG++ VRRD ++ + V+ +IL
Sbjct: 801 VYFPYLLINKKRYAGLYWTKPEKYDKM----DTKGIETVRRDNCRMVQTVIETVLKKILI 856
Query: 754 E------QSYTDYSLDDRLQN 768
E Q+Y ++ D LQN
Sbjct: 857 ERDVDGAQNYVKNTISDLLQN 877
>gi|442755665|gb|JAA69992.1| Putative membrane protein [Ixodes ricinus]
Length = 229
Score = 125 bits (313), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 1 MLILATFVPTTDNFS-GGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
MLILATF P D S GG DV G+ +K ++DL D VG ++V++ + GKG K L AG+GW
Sbjct: 50 MLILATFFPPGDVSSVGGFDVLGEFLKATVDLADLVGIHVVMTKVAGKGETKFLVAGLGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLID 98
A AE+++TRF+ LWVGARG EFDW+Y+Q S DSNI L++
Sbjct: 110 ASAELLMTRFVPLWVGARGMEFDWRYVQLSFDSNISLVN 148
>gi|242001812|ref|XP_002435549.1| membrane protein, putative [Ixodes scapularis]
gi|215498885|gb|EEC08379.1| membrane protein, putative [Ixodes scapularis]
Length = 229
Score = 125 bits (313), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 1/99 (1%)
Query: 1 MLILATFVPTTDNFS-GGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
MLILATF P D S GG DV G+ +K ++DL D VG ++V++ + GKG K L AG+GW
Sbjct: 50 MLILATFFPPGDVSSVGGFDVLGEFLKATVDLADLVGIHVVMTKVAGKGETKFLVAGLGW 109
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLID 98
A AE+++TRF+ LWVGARG EFDW+Y+Q S DSNI L++
Sbjct: 110 ASAELLMTRFVPLWVGARGMEFDWRYVQLSFDSNISLVN 148
>gi|125977976|ref|XP_001353021.1| GA19253 [Drosophila pseudoobscura pseudoobscura]
gi|54641772|gb|EAL30522.1| GA19253 [Drosophila pseudoobscura pseudoobscura]
Length = 1092
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 104/334 (31%), Positives = 171/334 (51%), Gaps = 41/334 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----------RMLQDSD 545
Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ + LQD
Sbjct: 566 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGSREKLREKDGLQDEQ 625
Query: 546 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 601
+ T Y + +V G+LP ++ L+ +R++ K +K + +D + D RQ AL
Sbjct: 626 VVRTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK---VETDPFKRKVLDGRQLAL 682
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NYE----VIY 652
K++ANS+YG G + ++ VTA GR ++ TK+ VE+ YE VIY
Sbjct: 683 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIELTKNEVESHYTRENGYENDAVVIY 742
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M++ V + ++G + + K ++L+ + VY LL+ KK+YA L
Sbjct: 743 GDTDSVMVNFGVKTLERSMELGREAAELVSAKFVHPIKLEFEKVYYPYLLINKKRYAGLY 802
Query: 712 ISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
++ + KM C KG++ VRRD S L + + ++L E+ D ++
Sbjct: 803 FTRPEAYDKMDC----KGIETVRRDNSPLVANLMNSCLQKLLIERD-PDGAVT------- 850
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
+ K++ DL + ++ L ITK+L K K
Sbjct: 851 -YAKQVIADLLCNRIDISQLVITKELAKTDYAAK 883
>gi|50293371|ref|XP_449097.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528410|emb|CAG62067.1| unnamed protein product [Candida glabrata]
Length = 1096
Score = 125 bits (313), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 152/300 (50%), Gaps = 33/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML---------QDSDI 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ + +D I
Sbjct: 586 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVDRLNLKKEEDYII 645
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 604
T +Y + GILP + +L+ +R++ K ++ D+L + RQ ALK++
Sbjct: 646 TPNGDYFVTTKKRRGILPIILDELISARKRAKKDLRDETDPFKRDVL---NGRQLALKIS 702
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 655
ANS+YG G + +++ VT+ GR +++ TK VE + VIYGDT
Sbjct: 703 ANSVYGFTGATVGKLPCLAISSSVTSFGRVMIMETKKAVEEKYSIKNGAKHDAVVIYGDT 762
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ D ++G + + +KL+K + L+ + Y LL+ KK+YA L
Sbjct: 763 DSVMVKFGTTDLKEAMELGAEAAAFVSKLFKHPINLEFEKAYFPYLLINKKRYAGL---Y 819
Query: 715 LSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ------SYTDYSLDDRLQN 768
+N + KG+ VRRD L S V+ +IL ++ + ++DD LQN
Sbjct: 820 WTNPDKYDKLDQKGLASVRRDSCSLVSIIMNKVLKKILIDRDVDSALGFVKATIDDILQN 879
>gi|154305265|ref|XP_001553035.1| hypothetical protein BC1G_08927 [Botryotinia fuckeliana B05.10]
Length = 846
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 145/271 (53%), Gaps = 32/271 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRMLQDSD--I 546
Y G V+EP +G+Y I +DF SLYPSIIQ +N+C+TT+ +++ +D D +
Sbjct: 580 YEGATVIEPTRGYYSVPIATLDFASLYPSIIQAHNLCYTTLLKKDVVEALKLEKDEDYIV 639
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
T + + G+L +++L+ +R+Q K A+ P + L + RQ ALK+
Sbjct: 640 TPNGDMFVTTKQRKGLLTQILEELLTARKQAKRELAVETDPFKKAVL----NGRQLALKI 695
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + P+A+ T+ GR+++ TK+ VE + + +VIYGD
Sbjct: 696 SANSVYGLTGATVGKVPCLPIASSTTSYGRQMIEKTKAEVEAKYTIANGYSHDAQVIYGD 755
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ V + K+G + +K K ++L+ + VY LL+ KK+YA L
Sbjct: 756 TDSVMVKFGVKELAEAMKLGEEAAQYVSSKFIKPIKLEFEKVYYPYLLINKKRYAGL--- 812
Query: 714 KLSNGKMICSQEIKGVDVVRRD---WSQLAS 741
+N + KG++ VRRD W Q++S
Sbjct: 813 YWTNPDKYDKMDTKGIETVRRDNCRWVQMSS 843
>gi|449301894|gb|EMC97903.1| hypothetical protein BAUCODRAFT_31911 [Baudoinia compniacensis UAMH
10762]
Length = 1107
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/337 (29%), Positives = 172/337 (51%), Gaps = 38/337 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRMLQDSDI-- 546
Y G V+EP +G+YD + +DF SLYPSI+Q +N+C+TT+ + + +D D
Sbjct: 581 YEGATVIEPTRGYYDVPVATLDFASLYPSIMQAHNLCYTTLLNKTAIEKLSLKKDEDYIQ 640
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLT 604
T + +V G+L +++L+ +R++ K K+ + +D + + RQ ALK++
Sbjct: 641 TPNGDLFCTAKVRKGLLSQILEELLSARKRAK---KELAVETDTFRKAVLNGRQLALKVS 697
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + +A+ T+ GR+++ TK VE + +VIYGDT
Sbjct: 698 ANSVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKEEVEARYTIANGYTHDAQVIYGDT 757
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M+ +D ++G + K + ++L+ + VY LL+ KK+YA L +K
Sbjct: 758 DSVMVKFGPSDLAKAMELGQDAADYVSKKFIRPIKLEFEKVYYPYLLINKKRYAGLYWTK 817
Query: 715 LSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
KM + KG++ VRRD +L Q + E S +D +Q +++
Sbjct: 818 PEKYDKM----DTKGIETVRRDNCRLV---------QTVIETSLRMLLMDRDVQGAQDYV 864
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQI 810
K ++L G + ++ L ITK LTK+ K T++
Sbjct: 865 KNTISELLLGKIDMSNLVITKALTKSDYASKQAHTEL 901
>gi|365766444|gb|EHN07940.1| Pol3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1097
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 160/319 (50%), Gaps = 37/319 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP---------VRMLQDSDI 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ +++ +D I
Sbjct: 587 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVI 646
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM---KQPNLSSDLLMQYDIRQKALKL 603
T +Y + GILP + +L+ +R++ K + K P D+L + RQ ALK+
Sbjct: 647 TPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEKDP-FKRDVL---NGRQLALKI 702
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGD 654
+ANS+YG G + +++ VTA GR ++L TK+ V+ + V+YGD
Sbjct: 703 SANSVYGFTGATVGKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGD 762
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D + +G + + L+K + L+ + Y LL+ KK+YA L
Sbjct: 763 TDSVMVKFGTTDLNEAMDLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLF-- 820
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+N + KG+ VRRD L S V+ +IL E+ ++D L + E +
Sbjct: 821 -WTNPDKFDKLDQKGLASVRRDSCSLVSIVMNKVLKKILIER-----NVDGALAFVRETI 874
Query: 774 KKI---RTDLDNGFVPLTL 789
I R D+ + TL
Sbjct: 875 NDILHNRVDISKLIISKTL 893
>gi|448932621|gb|AGE56179.1| DNA polymerase [Paramecium bursaria Chlorella virus NE-JV-1]
Length = 901
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 184/403 (45%), Gaps = 57/403 (14%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+K+M +L + ++ N + G+ R L E +Y +PD +
Sbjct: 395 LKLMTKLAIFEDVTEMANAVNVPVDWINFRGQQVRAFSCLFGKAREMNYAIPDDK----- 449
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+GK + G VLEPKKG Y + I +DF SLYPSII+ N+
Sbjct: 450 ------AWTTEGK------FEGATVLEPKKGAYFEPIAALDFASLYPSIIRANNMS---- 493
Query: 537 PVRMLQDS-----------DITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585
P ++ D+ +I T Q G++P+ + L + R+ K LM +
Sbjct: 494 PETLVMDARYANIPGVEYYEIATGIGTFRYSQKSQGVVPALLDDLAKFRKNAKKLMAIAH 553
Query: 586 LSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSL 642
D + YD Q++ K+ NS+YG LG P+AA VTA GR ++ + K
Sbjct: 554 KEGDEFKEALYDASQRSYKVVMNSVYGFLGANKGFIPCVPIAASVTATGRSMIDIAAKRA 613
Query: 643 VENL-NYEVIYGDTDSLMISC------NVNDYDSVFKIGNQIKSECNKLYKQL-ELDIDG 694
E L E+IYGDTDS+M+ N ND + F++ + E K YK +L+ +
Sbjct: 614 KELLPGSEIIYGDTDSIMVKMKLPSGKNQNDINDHFEVAKWLAGEITKEYKAPNDLEFEK 673
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
+Y +L KK+YAA+ S GK+ ++KG+ +VRRD+S + E K + IL
Sbjct: 674 IYYPYILFSKKRYAAVKFEDPSEKGKV----DVKGIALVRRDFSPITREILKESLDTILF 729
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
Q D+ + + +KIR LDN + P+ ++K L
Sbjct: 730 AQ--------DKELAVTDTRRKIRMVLDNEY-PMEKFVMSKTL 763
>gi|259145143|emb|CAY78407.1| Pol3p [Saccharomyces cerevisiae EC1118]
Length = 1097
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 160/319 (50%), Gaps = 37/319 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP---------VRMLQDSDI 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ +++ +D I
Sbjct: 587 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVI 646
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM---KQPNLSSDLLMQYDIRQKALKL 603
T +Y + GILP + +L+ +R++ K + K P D+L + RQ ALK+
Sbjct: 647 TPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEKDP-FKRDVL---NGRQLALKI 702
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGD 654
+ANS+YG G + +++ VTA GR ++L TK+ V+ + V+YGD
Sbjct: 703 SANSVYGFTGATVGKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGD 762
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D + +G + + L+K + L+ + Y LL+ KK+YA L
Sbjct: 763 TDSVMVKFGTTDLNEAMDLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLF-- 820
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+N + KG+ VRRD L S V+ +IL E+ ++D L + E +
Sbjct: 821 -WTNPDKFDKLDQKGLASVRRDSCSLVSIVMNKVLKKILIER-----NVDGALAFVRETI 874
Query: 774 KKI---RTDLDNGFVPLTL 789
I R D+ + TL
Sbjct: 875 NDILHNRVDISKLIISKTL 893
>gi|225682079|gb|EEH20363.1| DNA polymerase delta catalytic subunit [Paracoccidioides
brasiliensis Pb03]
Length = 1110
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 110/381 (28%), Positives = 189/381 (49%), Gaps = 60/381 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL--LLHAFHEKSYVLPDKQYGKN 475
K MC +N +A ++T V N L R ++ +F+ L E+ V+P+ +N
Sbjct: 527 KFMCLVNYTEMA-RVTGVPFNFLL-----SRGQQVKFISQLFRKALEQQLVIPNL---RN 577
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ E+ Y G V+EP + +YD I +DF SLYPSIIQ +N+C+TT
Sbjct: 578 EATSEQ--------------YEGATVIEPLRAYYDVPIATLDFASLYPSIIQAHNLCYTT 623
Query: 536 I---------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNL 586
+ ++ +D +T + +V G+L +++L+ +R++ K K+ +
Sbjct: 624 LLKKSTIEAHGMKEGEDYIVTPNGDRFCTAKVRKGLLTQILEELLGARKRAK---KELAV 680
Query: 587 SSDLLMQYDI--RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
+D + + RQ ALK++ANS+YG G + P+A+ T+ GR+++ TK VE
Sbjct: 681 ETDPFKKAVLNGRQLALKVSANSVYGLTGATVGKLPCLPIASSTTSYGRQMIEKTKEEVE 740
Query: 645 ---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDG 694
+ + +V+YGDTDS+M+ D K+G + +K + ++L+ +
Sbjct: 741 AKYTIANGYSNDAQVVYGDTDSVMVKFGTKDLAEAMKLGQEAADYVSDKFIRPIKLEFEK 800
Query: 695 VYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
VY LL+ KK+YA L +K KM + KG++ VRRD ++ + V+ +IL
Sbjct: 801 VYFPYLLINKKRYAGLYWTKPEKYDKM----DTKGIETVRRDNCRMVQTVIETVLKKILI 856
Query: 754 E------QSYTDYSLDDRLQN 768
E Q+Y ++ D LQN
Sbjct: 857 ERDVDGAQNYVKNTISDLLQN 877
>gi|324120750|dbj|BAJ78766.1| DNA polymerase delta catalytic subunit [Protohermes grandis]
Length = 1046
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 116/410 (28%), Positives = 200/410 (48%), Gaps = 59/410 (14%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
++IM LN L +++ V G ++ L G + LL Y++P ++
Sbjct: 460 LRIMDRLNSLTNDMELARVSGVTITTLLTRGEQVKVVTQLLSHARHAGYLMPVHHVQASE 519
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
++ Y G V+EPKK +Y I +DF+SLYPSI+ +N+C+TT+
Sbjct: 520 EQ-----------------YEGATVIEPKKDYYTLPIATLDFSSLYPSIMMAHNLCYTTL 562
Query: 537 --PVRM----LQDSDITTLCE--YLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPNLS 587
P + L++ DIT + Y + V G+LP ++ L+++R++ K L + + S
Sbjct: 563 VQPYIIDKLGLKEEDITKTPKGNYFVKSSVRCGLLPEILENLLKARKRAKNELAAETDPS 622
Query: 588 SDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645
++ + RQ ALK++ANS+YG G + ++ VT+ GRE++ T+ VE
Sbjct: 623 KKAVL--NGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTSYGREMIELTRKEVEERF 680
Query: 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYK 697
+ +V+YGDTDS+M+ V + K+G + + K K ++L+ + VY
Sbjct: 681 TLKNGYLHDAQVVYGDTDSVMVKFGVEEIAESMKLGREAAEFVSAKFIKPIKLEFEKVYC 740
Query: 698 YMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---D 753
LL+ KK+YA L ++ KM C KG++ VRRD S L + + ++L D
Sbjct: 741 PYLLINKKRYAGLYYTRPDKYDKMDC----KGLETVRRDNSPLVANTINICLQKLLIHKD 796
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGG 803
+ Y+ K++ +DL + ++ L I+K+LTK EG
Sbjct: 797 PEGAIKYT------------KQVISDLLCNRIDISQLVISKELTKG-EGA 833
>gi|410982336|ref|XP_003997513.1| PREDICTED: DNA polymerase delta catalytic subunit isoform 2 [Felis
catus]
Length = 1109
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 165/326 (50%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDI-T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKT 638
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + + +D L D RQ ALK++A
Sbjct: 639 PTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAK---ETDPLRRQVLDGRQLALKVSA 695
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE+ + +V+YGDTD
Sbjct: 696 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYGTSAKVVYGDTD 755
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + + + + L+ + VY LL+ KK+YA L S
Sbjct: 756 SVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFPYLLISKKRYAGLLFSSR 815
Query: 716 SNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 816 PDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPAGAVAHA 862
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 863 QDVISDLLCNRIDISQLVITKELTRA 888
>gi|324120702|dbj|BAJ78742.1| DNA polymerase delta catalytic subunit [Isonychia japonica]
Length = 1008
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 124/418 (29%), Positives = 201/418 (48%), Gaps = 59/418 (14%)
Query: 403 VEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHE 462
V +K L + K+MC +N + +A V G L L G+ + LL E
Sbjct: 411 VYCVKDAFLPLKLLDKLMCIINYMEMA----RVTGVSLLCLLTRGQQIKVVSQLLRKAKE 466
Query: 463 KSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
YV+P +G + G V+EPKKG+Y + I+ +DF+SLY
Sbjct: 467 HDYVIP----------------VYSVRGGNDEQFEGATVIEPKKGYYKQPIVTLDFSSLY 510
Query: 523 PSIIQEYNICFTTI--P-----VRMLQDSDITTLCE--YLPEHQVDTGILPSEIKKLVES 573
PSI+ +N+C+TT+ P + + D T E +L Q G+LP ++ L+ +
Sbjct: 511 PSIMMAHNLCYTTLLQPGTKEKLGLTSDQYTVTPNENCFLKASQ-RKGLLPEILESLLSA 569
Query: 574 RRQVKALMKQPNLSSDLLMQ--YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
R++ K +K+ +D L + D RQ ALK++ANS+YG G + ++ VTA
Sbjct: 570 RKKAKEDLKK---ETDPLRRKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISGSVTAY 626
Query: 632 GREILLNTKSLVEN---------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSEC- 681
GR ++ T+S VE + VIYGDTDS+MI V D + ++G +
Sbjct: 627 GRTMIEQTRSEVEQKFCLANGYAHDSTVIYGDTDSVMIKFGVEDLPTAMELGREAAEYVS 686
Query: 682 NKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLA 740
+K K ++L+ + VY LL+ KK+YA L ++ KM C KG++ VRRD L
Sbjct: 687 SKFIKPIKLEFEKVYFPYLLINKKRYAGLYYTRPDKYDKMDC----KGIETVRRDNCPLV 742
Query: 741 SEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+ + +L E+ D ++ ++K++ +DL + ++ L ITK+L K
Sbjct: 743 ANIMNTCLKMLLIERD-PDGAV--------RYVKEMISDLLCNRLDISQLVITKELAK 791
>gi|322703524|gb|EFY95132.1| DNA polymerase delta catalytic subunit [Metarhizium anisopliae
ARSEF 23]
Length = 1104
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 163/326 (50%), Gaps = 39/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQDSDITTLCEYL 553
Y G V+EP +G+YD I +DF SLYPSIIQ +N+C+TT+ ++++ + +Y+
Sbjct: 576 YEGATVIEPVRGYYDVPIATLDFASLYPSIIQAHNLCYTTLVKDKKLIEKFGLVKDEDYI 635
Query: 554 PEHQVDT--------GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKL 603
DT G+L +++L+ +R+Q K + Q +D + + RQ ALK+
Sbjct: 636 VTPNGDTFVTTKQRKGLLAQILEELLTARKQAKRELAQ---ETDPFKKAVLNGRQLALKI 692
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G + +A+ T+ GR+++ TK VE + +VIYGD
Sbjct: 693 SANSVYGLTGATTGKLPCLEIASSTTSFGRQMIERTKDEVEKKYNIANGYTHDAQVIYGD 752
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D K+G + +K K ++L+ + VY LL+ KK+YA L +
Sbjct: 753 TDSVMVKFGTKDLAEAMKLGEEASHYVSSKFVKPIKLEFEKVYFPYLLINKKRYAGLYWT 812
Query: 714 KLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ KM + KG++ VRRD L + V+ IL +D + E+
Sbjct: 813 RPEKYDKM----DTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDRDVGGAQEY 859
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTK 798
+K L V ++ L ITK LTK
Sbjct: 860 VKDTIASLLQNKVDMSKLVITKALTK 885
>gi|315231385|ref|YP_004071821.1| DNA polymerase I [Thermococcus barophilus MP]
gi|315184413|gb|ADT84598.1| archaeal DNA polymerase I [Thermococcus barophilus MP]
Length = 1138
Score = 124 bits (312), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 156/307 (50%), Gaps = 21/307 (6%)
Query: 515 LMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESR 574
++ NSLYPSII +N+ T+ ++ D+ + Y G + S +++L+E+R
Sbjct: 767 ILTHNSLYPSIIITHNVSPDTLEREGCKNYDVAPIVGYKFCKDFK-GFISSILEELIETR 825
Query: 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634
++K MK + D RQKA+KL ANS YG +G+P +R++++ A VTA GR
Sbjct: 826 TKIKKEMKA-TIDPIKRKMLDYRQKAVKLLANSHYGYMGYPKARWYSKECAESVTAWGRT 884
Query: 635 IL-LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDI 692
+ + K + E ++V+Y DTD L + D +++ K + N KL LEL+
Sbjct: 885 YIEMTIKEIEEKFGFKVLYADTDGLYATIPDADAETIKKKAKEFLKYINSKLPGLLELEY 944
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
+G Y + KK+YA + GK+ +G++VVRRDWS++A E V+ IL
Sbjct: 945 EGFYLRGFFVTKKRYAVID----EEGKITT----RGLEVVRRDWSEIAKETQAKVLEAIL 996
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRL 812
D ++ E +KK+ DL VPL L I +Q+TK+ + K + +
Sbjct: 997 K---------DGSVEKAVEIVKKVVEDLAKYKVPLEKLVIHEQITKSLDEYKATGPHVAV 1047
Query: 813 SRNRRGR 819
+R + +
Sbjct: 1048 ARRLKAK 1054
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,764,987,990
Number of Sequences: 23463169
Number of extensions: 851994816
Number of successful extensions: 38125605
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 123860
Number of HSP's successfully gapped in prelim test: 37576
Number of HSP's that attempted gapping in prelim test: 20771304
Number of HSP's gapped (non-prelim): 8226060
length of query: 1030
length of database: 8,064,228,071
effective HSP length: 153
effective length of query: 877
effective length of database: 8,769,330,510
effective search space: 7690702857270
effective search space used: 7690702857270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 82 (36.2 bits)