BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6283
(1030 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26019|DPOLA_DROME DNA polymerase alpha catalytic subunit OS=Drosophila melanogaster
GN=DNApol-alpha180 PE=1 SV=2
Length = 1488
Score = 481 bits (1239), Expect = e-135, Method: Compositional matrix adjust.
Identities = 246/437 (56%), Positives = 321/437 (73%), Gaps = 24/437 (5%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
I + I TM +SY++++MCELN++PLA+QITN+CGN ++RTL GGRSERNEFLLLHAF
Sbjct: 759 SITKLISLTMQDNSYLLRLMCELNIMPLALQITNICGNTMTRTLQGGRSERNEFLLLHAF 818
Query: 461 HEKSYVLPDKQ-----YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIIL 515
HEK+Y++PDK+ G + +G + +KKAAY+GGLVLEP +G Y+K+++L
Sbjct: 819 HEKNYIVPDKKPVSKRSGAGDTDATLSGADATMQTKKKAAYAGGLVLEPMRGLYEKYVLL 878
Query: 516 MDFNSLYPSIIQEYNICFTTI--PVRMLQDSD-ITTLCEYLPEHQVDTGILPSEIKKLVE 572
MDFNSLYPSIIQEYNICFTT+ PV D+D + TL P+ + + GILP ++K+LVE
Sbjct: 879 MDFNSLYPSIIQEYNICFTTVQQPV----DADELPTL----PDSKTEPGILPLQLKRLVE 930
Query: 573 SRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKG 632
SR++VK LM P+LS +L MQY IRQ ALKLTANSMYGCLGF +SRFFAQ LAALVT KG
Sbjct: 931 SRKEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGFAHSRFFAQHLAALVTHKG 990
Query: 633 REILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDI 692
REIL NT+ LV+ +NY+V+YGDTDSLMI+ N+ DYD V+KIG+ IK NKLYKQLELDI
Sbjct: 991 REILTNTQQLVQKMNYDVVYGDTDSLMINTNITDYDQVYKIGHNIKQSVNKLYKQLELDI 1050
Query: 693 DGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
DGV+ +LLLKKKKYAA+ +SK S G + QE KG+D+VRRDWSQLA GK V+ ++L
Sbjct: 1051 DGVFGCLLLLKKKKYAAIKLSKDSKGNLRREQEHKGLDIVRRDWSQLAVMVGKAVLDEVL 1110
Query: 753 DEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE--GGKVCITQI 810
E+ L+++L +H ++KI+T + G VPL L ITKQLT+ P+ + +
Sbjct: 1111 SEK-----PLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITKQLTRTPQEYANSASLPHV 1165
Query: 811 RLSRNRRGRRRRRRKKK 827
+++ R R R RR KK
Sbjct: 1166 QVAL-RMNRERNRRYKK 1181
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 107/182 (58%), Gaps = 16/182 (8%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL---- 267
R ++ +A+ED K PG V+LFG+ S C+ VQNI+R +YLLPR L
Sbjct: 362 LRFWYWEAYEDPVKMPGEVFLFGRT-----ADGKSVCLRVQNINRVLYLLPRQFLLDPIS 416
Query: 268 --KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYS 322
TK+ V++A +Y EFD ++A Q K+ F+SRK+ K +A + G VP +YLEV Y
Sbjct: 417 KEPTKQKVTVADIYKEFDSEVANQLKLEFFRSRKVTKSFAHHAIGIEVPQSCDYLEVHYD 476
Query: 323 AK--CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKY 380
K P L +D ++ +H+FG T+ LE LL+RKIKGP WL+ + P+ +SWC
Sbjct: 477 GKKPLPNLSADKKYNSIAHIFGATTNALERFLLDRKIKGPCWLQVTGFKVSPTPMSWCNT 536
Query: 381 EV 382
EV
Sbjct: 537 EV 538
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGG 156
+DK +FAA ++L+ LKG K K E ++VY+ V E+EY +R ++ DDWI++DG
Sbjct: 15 VDKNGRFAAMERLRQLKGTKNKCKVE-DQVDDVYDVVDEREYAKRAQEKYGDDWIEEDGT 73
Query: 157 DGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAK 196
GY ED R+ F+D+ E ++++ D +KK K + PN+K
Sbjct: 74 -GYAEDLRDFFEDEDEYSDGEEDRKDSKKK-KGVA-PNSK 110
>sp|Q9DE46|DPOLA_XENLA DNA polymerase alpha catalytic subunit OS=Xenopus laevis GN=pola1
PE=2 SV=1
Length = 1458
Score = 469 bits (1206), Expect = e-131, Method: Compositional matrix adjust.
Identities = 239/410 (58%), Positives = 311/410 (75%), Gaps = 13/410 (3%)
Query: 400 IGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHA 459
+ ++ ++ T + + +I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNE+LLLHA
Sbjct: 736 VHLLYMLENTWIDAKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHA 795
Query: 460 FHEKSYVLPDKQYGKNKKE-----GEETG-EANKGKGRKKAAYSGGLVLEPKKGFYDKFI 513
F E ++++PDK K ++ ++ G + NK K RKKAAY+GGLVLEPK GFYDKFI
Sbjct: 796 FTENNFIVPDKPVFKKMQQTTVEDNDDMGTDQNKNKSRKKAAYAGGLVLEPKVGFYDKFI 855
Query: 514 ILMDFNSLYPSIIQEYNICFTTIP--VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+L+DFNSLYPSIIQEYNICFTT+ Q + LP ++ GILP EI+KLV
Sbjct: 856 LLLDFNSLYPSIIQEYNICFTTVHREAPSTQKGEDQDEIPELPHSDLEMGILPREIRKLV 915
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
E RR VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT +
Sbjct: 916 ERRRHVKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQ 975
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREILL+TK +V+ +N EVIYGDTDS+MI+ N N+ + VFK+GN++KSE NK YK LE+D
Sbjct: 976 GREILLHTKEMVQKMNLEVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKSYKLLEID 1035
Query: 692 IDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
IDG++K +LLLKKKKYAAL++ +GK + QE+KG+D+VRRDW +LA +AG +VISQI
Sbjct: 1036 IDGIFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAGNYVISQI 1095
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +Q D ++NI + + +I ++ NG VP+T EI K LTK P+
Sbjct: 1096 LSDQPR-----DSIVENIQKKLTEIGENVTNGTVPITQYEINKALTKDPQ 1140
Score = 220 bits (560), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 104/198 (52%), Positives = 137/198 (69%), Gaps = 7/198 (3%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL T + +VFR ++LDA+ED Y QPG VYLFGKV+++ +++ SCCV V+NI+R +Y
Sbjct: 329 LPLVTGADGSQVFRFYWLDAYEDQYSQPGVVYLFGKVWIESADAYVSCCVSVKNIERTVY 388
Query: 260 LLPRSEHLK------TKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR ++ T PVS+ VY EF++ +A +YKI+ FKS+K++K YAF +P VP
Sbjct: 389 LLPRENRVQLSTGKDTGAPVSMMHVYQEFNEAVAEKYKIMKFKSKKVDKDYAFEIPDVPA 448
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEVRYSA P LP DL G+TFSHVFGT TS LE LL RKIKGPSWLE +
Sbjct: 449 SSEYLEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSWLEIKSPQLSS 508
Query: 373 SRISWCKYEVQCNQMEKI 390
+SWCK E + +++
Sbjct: 509 QPMSWCKVEAVVTRPDQV 526
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGD 157
+K+ + A ++LK K G K KYE ++YEEV E EY++ V RQ+DDWI DD G
Sbjct: 18 EKSGRKEALERLKRAKA-GEKVKYEVEQVSSIYEEVDEAEYSKLVRDRQDDDWIVDDDGT 76
Query: 158 GYVEDGREIFDDDIED 173
GYVEDGREIFDDD+ED
Sbjct: 77 GYVEDGREIFDDDLED 92
>sp|P09884|DPOLA_HUMAN DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1
SV=2
Length = 1462
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/413 (58%), Positives = 317/413 (76%), Gaps = 19/413 (4%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ + +K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV+K +LLLKKKKYAAL + S+G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1037 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 110/286 (38%), Positives = 162/286 (56%), Gaps = 40/286 (13%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 318 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 377
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 378 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 437
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 438 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 497
Query: 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
WLE + +SWCK E M ++ ++
Sbjct: 498 WLEVKSPQLLNQPVSWCKVE---------------------------AMALKPDLVNVIK 530
Query: 422 ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVL 467
+++ PL + ++ +T+ ++ +NE + + A S+ L
Sbjct: 531 DVSPPPLVVMAFSM------KTMQNAKNHQNEIIAMAALVHHSFAL 570
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 34 ALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 92
Query: 165 EIF 167
EIF
Sbjct: 93 EIF 95
>sp|O89042|DPOLA_RAT DNA polymerase alpha catalytic subunit (Fragment) OS=Rattus
norvegicus GN=Pola1 PE=2 SV=1
Length = 1451
Score = 465 bits (1197), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/400 (60%), Positives = 311/400 (77%), Gaps = 19/400 (4%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK 474
+I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ +
Sbjct: 758 FILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR 817
Query: 475 --NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527
+K G+E G+ NK KGRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQ
Sbjct: 818 KPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQ 877
Query: 528 EYNICFTTI------PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
E+NICFTT+ ++ +D + + E LP+ +D GILP EI+KLVE R+QVK LM
Sbjct: 878 EFNICFTTVQRVASETLKATEDEEQEQIPE-LPDPNLDMGILPREIRKLVERRKQVKQLM 936
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
KQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK
Sbjct: 937 KQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKE 996
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLL 701
+V+ +N EVIYGDTDS+MI+ N + + VFK+GN++K+E NKLYK LE+DIDGV+K +LL
Sbjct: 997 MVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLL 1056
Query: 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
LKKKKYAAL + S+G I QE+KG+D+VRRDW LA + G FVI QIL +QS
Sbjct: 1057 LKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR---- 1112
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1113 -DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1151
Score = 216 bits (550), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 116/263 (44%), Positives = 163/263 (61%), Gaps = 15/263 (5%)
Query: 131 EEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIF-DDDIEDVPQKKEKHDKRKKNKN 189
EEV E+E + QE + ++ + E G F D + DV D +K++N
Sbjct: 267 EEVDEEEPVTAKIWDQESEPVEGVKHEADPETGTTSFLDSFLPDV----SCWDIDQKDEN 322
Query: 190 ---IQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSS 246
+Q + LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+V+ +H S
Sbjct: 323 SFLLQEVQVDSNHLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWVESAKTHVS 382
Query: 247 CCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKI 299
CCV+V+NI+R +Y LPR + +T P+++ VY EFD +I+ +YKI+ FKS+ +
Sbjct: 383 CCVMVKNIERTLYFLPREMKIDLNTGKETATPITMKDVYEEFDSKISAKYKIMKFKSKIV 442
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKG 359
EK YAF +P VP+ SEYLEVRYSA+ P LP +L G+TFSHVFGT TS LE L+ RKIKG
Sbjct: 443 EKNYAFEIPDVPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKG 502
Query: 360 PSWLEFPEAEKFPSRISWCKYEV 382
P WLE + ISWCK+E
Sbjct: 503 PCWLEVKNPQLLNQPISWCKFEA 525
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>sp|P33609|DPOLA_MOUSE DNA polymerase alpha catalytic subunit OS=Mus musculus GN=Pola1 PE=1
SV=2
Length = 1465
Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/417 (58%), Positives = 316/417 (75%), Gaps = 22/417 (5%)
Query: 398 YLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLL 457
YL+ ++E I + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLL
Sbjct: 741 YLLYLLEHI---WKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLL 797
Query: 458 HAFHEKSYVLPDKQYGK--NKKEGEET----GEANK-GKGRKKAAYSGGLVLEPKKGFYD 510
HAF+E +Y++PDKQ + +K G+E G+ NK KGRKKA Y+GGLVL+PK GFYD
Sbjct: 798 HAFYENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKATYAGGLVLDPKVGFYD 857
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILP 564
KFI+L+DFNSLYPSIIQE+NICFTT+ + +D + + E LP+ ++ GILP
Sbjct: 858 KFILLLDFNSLYPSIIQEFNICFTTVQRVTSEVQKATEDEEQEQIPE-LPDPNLEMGILP 916
Query: 565 SEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPL 624
EI+KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PL
Sbjct: 917 REIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPL 976
Query: 625 AALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKL 684
AALVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKL
Sbjct: 977 AALVTYKGREILMHTKDMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKL 1036
Query: 685 YKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAG 744
YK LE+DID V+K +LLLKKKKYAAL + S+G I QE+KG+D+VRRDW LA + G
Sbjct: 1037 YKLLEIDIDAVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTG 1096
Query: 745 KFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
FVI QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 NFVIGQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1148
Score = 213 bits (543), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 100/191 (52%), Positives = 135/191 (70%), Gaps = 7/191 (3%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 258
+LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+R +
Sbjct: 332 NLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWIESVKTHVSCCVMVKNIERTL 391
Query: 259 YLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPGVP 311
Y LPR +T PV++ VY EFD +I+ +YKI+ FKS+ +EK YAF +P VP
Sbjct: 392 YFLPREMKFDLNTGKETAIPVTMKDVYEEFDSKISAKYKIMKFKSKIVEKNYAFEIPDVP 451
Query: 312 DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
+ SEYLEVRYSA+ P LP +L G+TFSHVFGT TS LE L+ RKIKGP WLE +
Sbjct: 452 EKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLL 511
Query: 372 PSRISWCKYEV 382
ISWCK+EV
Sbjct: 512 NQPISWCKFEV 522
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 45/63 (71%), Gaps = 1/63 (1%)
Query: 105 AFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGR 164
A ++LK K G K+KYE +VYEEV E++Y++ V RQ+DDWI DD G GYVEDGR
Sbjct: 40 ALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIGYVEDGR 98
Query: 165 EIF 167
EIF
Sbjct: 99 EIF 101
>sp|O48653|DPOLA_ORYSJ DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp.
japonica GN=Os01g0868300 PE=2 SV=2
Length = 1534
Score = 338 bits (867), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 196/425 (46%), Positives = 276/425 (64%), Gaps = 41/425 (9%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
+++ +++ + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLHAF
Sbjct: 788 ALLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAF 847
Query: 461 HEKSYVLPDK-----QYGKNKKEGEETGEA-----------------NKGKGRKKAAYSG 498
H + +++PDK ++ K++ EA ++GK +K +Y+G
Sbjct: 848 HARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQGKTKKGPSYAG 907
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPKKG YDK+++L+DFNSLYPSIIQEYNICFTT V D ++ LP +
Sbjct: 908 GLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT--VDRSADGNVPN----LPASKT 961
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDL-LMQYDIRQKALKLTANSMYGCLGFPNS 617
TG+LP +K LVE RR VK+ +K +S L Q+DI+Q+ALKLTANSMYGCLGF NS
Sbjct: 962 -TGVLPELLKSLVERRRMVKSWLKT---ASGLKRQQFDIQQQALKLTANSMYGCLGFSNS 1017
Query: 618 RFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
RF+A+PLA L+T +GREIL NT LV+ NLN EVIYGDTDS+MI ++D I +
Sbjct: 1018 RFYAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGK 1077
Query: 677 IKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDW 736
+ E NK Y+ LE+D+DG+YK MLLLKKKKYAA+ ++ +G + + E KG+D+VRRDW
Sbjct: 1078 VIQEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDW 1135
Query: 737 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
S L+ E G F ++QIL + S DD +++IH + +++ + G L ITK L
Sbjct: 1136 SLLSKEIGDFCLNQIL-----SGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSL 1190
Query: 797 TKAPE 801
TKAPE
Sbjct: 1191 TKAPE 1195
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 104/205 (50%), Gaps = 27/205 (13%)
Query: 211 VFRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL-- 267
+ LDA+E+ + GTVYLFGKV V + SCCV+V+N+ R IY +P S
Sbjct: 353 ALPFYILDAYEEPFGANSGTVYLFGKVEVGKR--FHSCCVVVKNMQRCIYAIPSSSIFPR 410
Query: 268 ------------KTKEPVSIAQVY-------SEFDQIATQYKILDFKSRKIEKKYAFNLP 308
P A ++ SE + + + +F +++ YAF
Sbjct: 411 DTISRLEKNSTTSDSSPSLRASLHELASGLKSEIADKLSDFNVSNFAMTPVKRNYAFERT 470
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
+P+ +Y L++ Y K PALP+DL G F + GT S LE LL++RKIKGPSWL +
Sbjct: 471 DLPNGEQYVLKINYPYKDPALPTDLRGQHFHALLGTNNSALELLLIKRKIKGPSWLSISK 530
Query: 368 AEKFPS--RISWCKYEVQCNQMEKI 390
P+ R+SWCK+EV + + I
Sbjct: 531 FLACPATQRVSWCKFEVTVDSPKDI 555
Score = 37.4 bits (85), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 104 AAFQKLKDLK--GQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDD--WIDDDGGDGY 159
AA ++L+ ++ G + + +Y+ V+E++Y V +R++D +I DD G GY
Sbjct: 27 AALERLRAIRDGGARAAAAVQVRIEAPIYDTVAEEDYAALVARRRKDAGAFIVDDDGLGY 86
Query: 160 VEDGRE 165
+DGRE
Sbjct: 87 ADDGRE 92
>sp|Q9FHA3|DPOLA_ARATH DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana
GN=POLA PE=3 SV=2
Length = 1524
Score = 337 bits (865), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 202/447 (45%), Positives = 274/447 (61%), Gaps = 46/447 (10%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+VE I+ + +++M L+VLPL +Q+TN+ GN+ +TL G R++R E+ LLH FH
Sbjct: 780 LVELIECGETDAWLSMELMFHLSVLPLTLQLTNISGNLWGKTLQGARAQRIEYYLLHTFH 839
Query: 462 EKSYVLPDK---------------QYGKNKKEGEE-----TGEANKGKG---RKKAAYSG 498
K ++LPDK Y + +E T E + KG +K AY+G
Sbjct: 840 SKKFILPDKISQRMKEIKSSKRRMDYAPEDRNVDELDADLTLENDPSKGSKTKKGPAYAG 899
Query: 499 GLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQV 558
GLVLEPK+G YDK+++L+DFNSLYPSIIQEYNICFTTIP +D LP Q
Sbjct: 900 GLVLEPKRGLYDKYVLLLDFNSLYPSIIQEYNICFTTIPRS--EDG-----VPRLPSSQT 952
Query: 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY---DIRQKALKLTANSMYGCLGFP 615
GILP ++ LV R+ VK MK+ + ++Y DIRQ+ALKLTANSMYGCLGF
Sbjct: 953 -PGILPKLMEHLVSIRKSVKLKMKK-----ETGLKYWELDIRQQALKLTANSMYGCLGFS 1006
Query: 616 NSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIG 674
NSRF+A+PLA L+T +GR+IL T LV+N LN EVIYGDTDS+MI ++D + V I
Sbjct: 1007 NSRFYAKPLAELITLQGRDILQRTVDLVQNHLNLEVIYGDTDSIMIHSGLDDIEEVKAIK 1066
Query: 675 NQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRR 734
+++ E NK Y+ L++D DG+YK MLLL+KKKYAA+ + + +GK E KGVD+VRR
Sbjct: 1067 SKVIQEVNKKYRCLKIDCDGIYKRMLLLRKKKYAAVKL-QFKDGKPCEDIERKGVDMVRR 1125
Query: 735 DWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITK 794
DWS L+ E G +S+IL S +D ++ IH + KI+ ++ NG V L ITK
Sbjct: 1126 DWSLLSKEIGDLCLSKIL-----YGGSCEDVVEAIHNELMKIKEEMRNGQVALEKYVITK 1180
Query: 795 QLTKAPEGGKVCITQIRLSRNRRGRRR 821
LTK P +Q + R R+R
Sbjct: 1181 TLTKPPAAYPDSKSQPHVQVALRMRQR 1207
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 31/226 (13%)
Query: 212 FRMFFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
R F LDA+E+ + GT+YLFGKV K +++ SCCV+V+NI R +Y +P +
Sbjct: 345 LRFFILDAYEEAFGASMGTIYLFGKV--KMGDTYKSCCVVVKNIQRCVYAIPNDSIFPSH 402
Query: 271 EPVSIAQ----------------------VYSEFDQIATQYKILDFKSRKIEKKYAFNLP 308
E + + Q + +E Q Q + +F +++ YAF P
Sbjct: 403 ELIMLEQEVKDSRLSPESFRGKLHEMASKLKNEIAQELLQLNVSNFSMAPVKRNYAFERP 462
Query: 309 GVPDLSEY-LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPE 367
VP +Y L++ YS K LP DL G++FS + G+ TS LE+ +L+RKI GP WL+
Sbjct: 463 DVPAGEQYVLKINYSFKDRPLPEDLKGESFSALLGSHTSALEHFILKRKIMGPCWLKISS 522
Query: 368 -AEKFPSR-ISWCKYEVQCNQMEKIR---SKQGLIYLIGIVEFIKF 408
+ PS +SWCK+EV + I S++ +++ +V I
Sbjct: 523 FSTCSPSEGVSWCKFEVTVQSPKDITILVSEEKVVHPPAVVTAINL 568
>sp|P28040|DPOA_SCHPO DNA polymerase alpha catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol1 PE=1 SV=1
Length = 1405
Score = 325 bits (833), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 185/429 (43%), Positives = 264/429 (61%), Gaps = 17/429 (3%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + + +I + ++ +L L+ +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 727 GLLDYLVHCEIDTFFIAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTRAERNEYILLHEF 786
Query: 461 HEKSYVLPDKQYGKNKKE---GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMD 517
+ Y++PDKQ + G E G + G+KK Y GGLV EP+KG Y+ I++MD
Sbjct: 787 KKNGYIVPDKQQSIRRHAEAFGAEDGLQEESLGKKKDKYKGGLVFEPQKGLYETCILVMD 846
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ R +SD P + GI P I LVE RRQ+
Sbjct: 847 FNSLYPSIIQEYNICFTTVD-RSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQI 905
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K L+K + + +Q+DI+Q+ALKLTANSMYGCLG+ SRF+A+PLA L+T KGRE L+
Sbjct: 906 KGLLKDNSATPTQRLQWDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREALM 965
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYK 697
NTK L + + +VIYGDTDS+M++ NV D + +IGN+ K + N+ Y +LE+DID VY+
Sbjct: 966 NTKELADQMGLQVIYGDTDSVMLNTNVTDKNHALRIGNEFKEKVNERYSKLEIDIDNVYQ 1025
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
MLL KKKYAAL + S GK + ++KG+D+ RR++ LA EA KF + QIL +
Sbjct: 1026 RMLLHAKKKYAALQLD--SQGKP--NLDVKGLDMKRREFCTLAKEASKFCLDQILSGE-- 1079
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE----GGKVCITQIRLS 813
+ ++NIH ++ + NG P I +L K PE G + Q+ L
Sbjct: 1080 ---LTETVIENIHSYLMDFSEKMRNGKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVALK 1136
Query: 814 RNRRGRRRR 822
+ RG R
Sbjct: 1137 KKARGENVR 1145
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 107/195 (54%), Gaps = 11/195 (5%)
Query: 201 PLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYL 260
P E+ +F FF + ++Y G++ LFGKV+ K + SC + V I R +Y
Sbjct: 320 PSDVTEEDGSLF--FFWMDYTEMY---GSLCLFGKVYDKATKQYVSCFLKVDGIMRSLYF 374
Query: 261 LPRSEHLKTKEPVSIAQ---VYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYL 317
LPR E AQ VY E + ++ + ++KSR + KYAF L VP ++YL
Sbjct: 375 LPRPSSSSVSEDSIAAQTKDVYDEVANLLSKRGVKEWKSRVSKYKYAFELEDVPRTADYL 434
Query: 318 EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RI 375
EV YS PALP+DL+G +FSHVFGT T+ E +L R++ GP WL+ + F +
Sbjct: 435 EVIYSYSYPALPTDLTGSSFSHVFGTNTALFEQFVLSRRVMGPCWLKI-QQPNFDAVKNA 493
Query: 376 SWCKYEVQCNQMEKI 390
SWC+ E+ C+ + I
Sbjct: 494 SWCRVEIGCSSPQNI 508
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 59/104 (56%), Gaps = 7/104 (6%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDG 155
I + +FA + L+ G+ YE +E +Y+ VSE+EY + V +R EDD++ DD
Sbjct: 8 IKPSQRFAELRALRQ-AGKTRASTYESKENEELYDNVSEEEYRKIVRQRLDEDDFVVDDN 66
Query: 156 GDGYVEDGREIFD----DDIEDVPQKKEKHDKRKKNKNI-QNPN 194
G GYV++G + +D D +D +K KRKK+KN+ PN
Sbjct: 67 GAGYVDNGYDEWDQSHYSDEDDENEKGSSGRKRKKSKNVLAEPN 110
>sp|P27727|DPOLA_TRYBB DNA polymerase alpha catalytic subunit OS=Trypanosoma brucei brucei
PE=3 SV=1
Length = 1339
Score = 308 bits (788), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 259/421 (61%), Gaps = 37/421 (8%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
L+V+PL ++T + GN+ SRTL G RSER E+LLLHAFH +V PDK+ K++ +
Sbjct: 660 LDVIPLTKRLTLLAGNLWSRTLYGARSERIEYLLLHAFHNLKFVTPDKK----KRDLKRG 715
Query: 483 GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------ 536
E + +G++K Y GG+VLEPK G Y ++I+L+DFNSLYPS+IQE+N+C+TTI
Sbjct: 716 REDDDDEGKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQEFNVCYTTIDRDENT 775
Query: 537 ------PVRMLQDSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSS 588
P +S I C LP + ILP I+ LV+SRR++K +MK
Sbjct: 776 VSAEVPP----PESLICLSCRAAGLPSPCLHKCILPKVIRGLVDSRREIKRMMKSEKDPG 831
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN- 647
+L M +IRQ ALKLTANSMYGCLGF SRF+AQPLA LVT +GR L NT L+ ++
Sbjct: 832 NLAM-LEIRQLALKLTANSMYGCLGFEYSRFYAQPLAELVTRQGRLALQNTVELIPQISP 890
Query: 648 -YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
VIYGDTDS+MI + +D V +G +IK + N+ Y+ LELDIDGV++ MLLL+KK
Sbjct: 891 SIRVIYGDTDSVMIQTGIKDDIVKVRNLGFEIKGKVNQRYQSLELDIDGVFRAMLLLRKK 950
Query: 706 KYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
KYAALS+ + +E+KG+D+VRRDW L+ V+ +IL+ + +D
Sbjct: 951 KYAALSVVDWQGEGKVYKREVKGLDMVRRDWCPLSQHVSDAVLKRILNAEGG-----EDI 1005
Query: 766 LQNIHEHMKKIRTDLDNGFV-PLTLLEITKQLTKAPE-----GGKVCITQIRLSRNRRGR 819
L + ++MK + D+ +G V PL I+K LTK PE G + +R+ + + G
Sbjct: 1006 LDFVIKYMKGVAQDVRSGNVYPLEEFVISKSLTKEPESYHGTGYPHAVVALRMKQRKEGV 1065
Query: 820 R 820
R
Sbjct: 1066 R 1066
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/172 (31%), Positives = 89/172 (51%), Gaps = 11/172 (6%)
Query: 214 MFFLDAFEDIYK--QPGTVYLFGKVFV-KENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
++ DA E + PGT+ LFGKV + +E+ SCCV +Q++ R ++LLP K
Sbjct: 243 FYWFDAKEQPHTLTAPGTILLFGKVCMNEEDEEFRSCCVRIQHVHRNVFLLP-------K 295
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPALP 329
E + A+V E + I I + + + +E+ YAF PGVP + + + ++ Y + P P
Sbjct: 296 EGSTDAEVVQEINAICRGSGIEERRIKFVERYYAFEEPGVPREKNRWAKLVYPGRYPPFP 355
Query: 330 SDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
+ V G S LE L+++++ GPS+LE R+S CK E
Sbjct: 356 NKGGLTHVQVVVGASRSLLELFLIKKRLMGPSYLEIEHLVTAMDRVSHCKTE 407
>sp|O00874|DPOLA_LEIDO DNA polymerase alpha catalytic subunit OS=Leishmania donovani PE=3
SV=1
Length = 1339
Score = 305 bits (781), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 181/399 (45%), Positives = 254/399 (63%), Gaps = 27/399 (6%)
Query: 419 IMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478
++ L+V+ L ++T + GN+ SRTL G RSER E+LLLH FH+ ++ PD+ Y +N K
Sbjct: 658 VVSHLDVIRLTKRLTTIAGNLWSRTLFGARSERIEYLLLHTFHDLKFITPDR-YVQNFKR 716
Query: 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV 538
G + E GK +KA Y GG+VL+PK G Y +I+L+DFNSLYPS+IQE+NICFTT+
Sbjct: 717 GRDDEEEEDGK--RKAKYQGGMVLDPKCGLYSDYILLLDFNSLYPSLIQEFNICFTTVDR 774
Query: 539 RMLQDSDITT----LCEY-----LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSD 589
+ D+ +C L + +LP IK LV+SRR+VK LMK +++
Sbjct: 775 ESGSEIDVPPPENLICASCAAAGLSAPCLHKCVLPKVIKSLVDSRREVKRLMKIEKDANN 834
Query: 590 LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLN-- 647
L + +IRQKALKLTANSMYGCLGF SRF AQPLA LVT +GR L +T L+ LN
Sbjct: 835 LAL-LEIRQKALKLTANSMYGCLGFEYSRFHAQPLAELVTRQGRLALQSTVDLIPQLNPS 893
Query: 648 YEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK 706
VIYGDTDS+MI + ND +V +G +K++ NK Y+ LE+DIDGV++ +LLLKKKK
Sbjct: 894 LRVIYGDTDSVMIQTGIKNDIKAVRDLGLDLKAKINKRYQSLEIDIDGVFRAILLLKKKK 953
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD---EQSYTDYSLD 763
YAAL+++ +E+KG+D+VRRDW L+ V+S++L+ + DY +
Sbjct: 954 YAALTVTDWQGEGKTYKKEVKGLDMVRRDWCPLSKCVCDSVLSRVLNAEGSEDILDYVM- 1012
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ ++++ E ++ R LDN FV I+K LTK PE
Sbjct: 1013 NYMRDVSEKVRAGRYTLDN-FV------ISKSLTKEPEA 1044
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 101/189 (53%), Gaps = 19/189 (10%)
Query: 214 MFFLDAFEDIYK---QPGTVYLFGKVFVKEN--NSHSSCCVIVQNIDRKIYLLPRSEHLK 268
++ DA E + PG+++LFGK+ V++N S+ SCCV V+N+ R +++LP++
Sbjct: 243 FYWFDAREQPHTLSVDPGSLFLFGKMAVEKNGRTSYLSCCVRVRNMYRSVFVLPKAGS-- 300
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVP-DLSEYLEVRYSAKCPA 327
S V E + I I + + +E+ YAF +PGVP + +++ ++RY + P
Sbjct: 301 -----SQEDVVKEINDICRNQGIEQRRIKFVERYYAFEVPGVPHEKTQWAKLRYPGRYP- 354
Query: 328 LPSDLSGDTFSHVF---GTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQC 384
P + G F H+ G +S LE L++RK+KGPS+L +RIS C E
Sbjct: 355 -PLNAKG-PFRHILIIMGASSSLLELFLIKRKLKGPSFLRISGLVASANRISHCALEFSV 412
Query: 385 NQMEKIRSK 393
+ +R++
Sbjct: 413 ESPKNLRAE 421
>sp|Q94636|DPOLA_OXYNO DNA polymerase alpha catalytic subunit OS=Oxytricha nova PE=3 SV=1
Length = 1492
Score = 298 bits (764), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 194/434 (44%), Positives = 263/434 (60%), Gaps = 39/434 (8%)
Query: 397 IYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLL 456
+ + + + I T + +++M L V+PL Q+TN+ GN+ R+L R+ERNE LL
Sbjct: 733 VQMAKLFQLIDHTEKDAYLTLQLMNHLQVIPLTKQLTNIAGNLWFRSLQNARAERNEMLL 792
Query: 457 LHAFHEKSYVLPDKQYGKNKK--------EGEETGEANKGKGRKKAAYSGGLVLEPKKGF 508
LH F +K +VLPDK+ K E EE KG RKKAAY+GGLV+EPK GF
Sbjct: 793 LHEFKKKKFVLPDKKQLNAKDLKKNMFADEYEEGDGKTKGGKRKKAAYAGGLVIEPKAGF 852
Query: 509 YDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLCEY------------- 552
YD I+L+DFNSLYPSIIQEYN+CFTT+ P + S++ +Y
Sbjct: 853 YDNIILLLDFNSLYPSIIQEYNLCFTTVNRRPTKNFDGSEMKN--QYKKGENGEEEVDIE 910
Query: 553 ---LPEHQVDT--GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANS 607
LP+ V+ +LP ++ LV+ R+ VK MK L Q +IRQKA+KLTANS
Sbjct: 911 EADLPDKNVNLKDAVLPMVLRDLVQKRKAVKDKMKTEK-DHVKLSQLEIRQKAIKLTANS 969
Query: 608 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVND 666
MYGCLGF +SRF AQ +AAL+T GRE LL TK + EN L + V+YGDTDS+MI+ N
Sbjct: 970 MYGCLGFGSSRFHAQAIAALITRTGRETLLRTKDIAENKLGFNVVYGDTDSIMINTGSNQ 1029
Query: 667 YDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISK-LSNGKMICSQE 725
++G ++K E N LYK LE++IDGV+K +LLLKKKKYAAL LS ++ QE
Sbjct: 1030 LQQALEMGKRLKGEVNCLYKCLEIEIDGVFKSLLLLKKKKYAALKYENFLSPAEVKVVQE 1089
Query: 726 IKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFV 785
+KG+D+VRRDW L+ G++V+ QIL + + L N++E + I +L G +
Sbjct: 1090 MKGLDMVRRDWCPLSKRVGRYVLDQILSGKQREEVVL-----NLNEFLSNIGNELKEGTI 1144
Query: 786 PLTLLEITKQLTKA 799
L ITKQ+TKA
Sbjct: 1145 KLNEFIITKQITKA 1158
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 14/204 (6%)
Query: 187 NKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSS 246
N N N +D LPL D +++DA E+ +++FGK++ E S
Sbjct: 310 NDNALMSNQQDYPLPLNED----GTLSFYWIDAHEE--NNGADLFVFGKIYQHEERKFVS 363
Query: 247 CCVIVQNIDRKIYLLP------RSEHLKTKEPVSIAQVYSEFDQIATQY-KILDFKSRKI 299
C + V + R++++LP R+ +E +V E + + ++ I ++ + +
Sbjct: 364 CSIKVNGMQRELFVLPKMSGKSRAAMTTEEEKEQARKVMMELEGVRKRFPAITKWRCKPV 423
Query: 300 EKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKG 359
+KYAF LP ++++++Y A P+LPS + G+TF +FG S LE+ +L+RKI+G
Sbjct: 424 TRKYAFELPIQHGEHQFVKIKYDATFPSLPSTVQGNTFECIFGANQSMLESFILKRKIRG 483
Query: 360 PSWLEFPEAEKFPS-RISWCKYEV 382
P W+ +K R +WCK E+
Sbjct: 484 PCWMTIRNPQKVTDFRRTWCKQEI 507
Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 117 VKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIF--DDDIEDV 174
+KH + + ++EE+ + EY + R+ DD+I DD G GY + G EI+ D D+E+V
Sbjct: 2 IKHILQVEETKKIFEEIDDNEYEKIQDSRKNDDFIVDDDGYGYRDHGGEIWDRDGDVEEV 61
Query: 175 -PQKKEKHDKRKKNKNIQN 192
+KK+K + N+NI N
Sbjct: 62 GKKKKKKQNNHDPNENIMN 80
>sp|P13382|DPOA_YEAST DNA polymerase alpha catalytic subunit A OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL1 PE=1 SV=2
Length = 1468
Score = 296 bits (758), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 255/403 (63%), Gaps = 16/403 (3%)
Query: 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEET 482
+ +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+ +++ + +
Sbjct: 768 IQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQ 827
Query: 483 GEANKGK--GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM 540
E N KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT+
Sbjct: 828 NEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVD--- 884
Query: 541 LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
DI L +P +VD G+LP + LV+ RR+VK +MK +Q DIRQ+A
Sbjct: 885 RNKEDIDEL-PSVPPSEVDQGVLPRLLANLVDRRREVKKVMKT-ETDPHKRVQCDIRQQA 942
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
LKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDTDS+MI
Sbjct: 943 LKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDTDSVMI 1002
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
++Y KIG K N+ Y+ LE+DID V+K +LL KKKYAAL+++ NG
Sbjct: 1003 DTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLDKNGNG 1062
Query: 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780
E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++ IR +
Sbjct: 1063 TTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLEDIRIKV 1117
Query: 781 DNGFVPLTLLEITKQLTKAPE---GGK-VCITQIRLSRNRRGR 819
+ + + +I +L+K P+ GGK + Q+ L + GR
Sbjct: 1118 ETNNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALRMRKAGR 1160
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 101/187 (54%), Gaps = 19/187 (10%)
Query: 211 VFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
F+MF+LD E T+ LFGKV +K++N S+ V + + R+++ LPR + K
Sbjct: 351 TFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLCRELFFLPR----EGK 401
Query: 271 EPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCP---- 326
P I + + +Y + + +++ + KY+F LP +P S+YL+V + P
Sbjct: 402 TPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESDYLKVLLPYQTPKSSR 459
Query: 327 -ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQ 383
+PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+ F S S C EV
Sbjct: 460 DTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD-FNSIRNASHCAVEVS 518
Query: 384 CNQMEKI 390
++ + I
Sbjct: 519 VDKPQNI 525
>sp|Q27152|DPOLA_OXYTR DNA polymerase alpha catalytic subunit OS=Oxytricha trifallax PE=3
SV=1
Length = 1513
Score = 288 bits (737), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 187/416 (44%), Positives = 256/416 (61%), Gaps = 39/416 (9%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--YGK 474
I++M L ++PL +Q+TN+ GN+ R+L R+ERNE LLLH F +K ++LPDK+ + K
Sbjct: 779 IQLMNHLAIIPLTLQLTNIAGNLWFRSLQNARAERNEMLLLHEFKKKKFILPDKKAPFAK 838
Query: 475 NKK------EGEE---TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSI 525
+ K E EE KG RKKAAY+GGLV+EPK GFYD I+L+DFNSLYPSI
Sbjct: 839 DFKRNMFADEFEELKSGKGPKKGGKRKKAAYAGGLVIEPKAGFYDNIILLLDFNSLYPSI 898
Query: 526 IQEYNICFTTI---PVRMLQDSDITTLCEY---------------LPEHQVDT--GILPS 565
IQEYN+CFTT+ P + S++ + + LP+ V+ +LP+
Sbjct: 899 IQEYNLCFTTVNRRPTKNFDGSEVKSQFKAAGTDANEGNEVEEADLPDKNVNVKDAVLPN 958
Query: 566 EIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLA 625
++ LV+ R+ VK MK + L Q +IRQKA+KLTANSMYGCLGF +SRF AQ +A
Sbjct: 959 VLRDLVQKRKAVKEKMKNEK-DAVKLSQLEIRQKAIKLTANSMYGCLGFGSSRFHAQAIA 1017
Query: 626 ALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKS-ECNK 683
AL+T GR+ LL TK + EN L + V+YGDTDS+MI+ N ++G + + +
Sbjct: 1018 ALITKTGRDTLLRTKDIAENKLGFNVVYGDTDSIMINTGTNQLQQSLEMGKRPQGLKLIA 1077
Query: 684 LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEA 743
LYK LE++IDGV+K +LLLKKKKYAAL QE+KG+D+VRRDW L+
Sbjct: 1078 LYKCLEIEIDGVFKSLLLLKKKKYAALKYEGFGTPDAKVVQEVKGLDMVRRDWCPLSKNV 1137
Query: 744 GKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
G FV++QIL + D L N++E++ I + N + L ITKQLTKA
Sbjct: 1138 GNFVLNQILSGKQREDVVL-----NLNEYLSDIGEKMKNNGITLDQFIITKQLTKA 1188
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 104/200 (52%), Gaps = 25/200 (12%)
Query: 194 NAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGT-VYLFGKVFVKENNSHSSCCVIVQ 252
N ++ LPL +EN +++DA E+ GT +Y+FGK++ + SC + V
Sbjct: 342 NTQEFPLPL---NENG-TLSFYWIDAHEE---NNGTDLYIFGKIYQPQMRQFVSCSMKVN 394
Query: 253 NIDRKIYLLP------RSEHLKTKEPVSIAQVYSEFDQIATQ--YKILDFKSRKIEKKYA 304
+ R++Y LP R +E + V E D I + +I ++ + + +KYA
Sbjct: 395 GMQRELYALPKMRGKARGALTVEEEKQQVRAVMMELDDIRKKRFPQISKWRCKPVNRKYA 454
Query: 305 FNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLE 364
F +P ++L+++Y + P LPS + G+TF +FG+ S LE +L+RKI+GP W+
Sbjct: 455 FEMPIQHGEHQFLKIKYDSTMPPLPSTIQGNTFECIFGSTQSMLELFILKRKIRGPCWMT 514
Query: 365 FPEAEKFPSRI-----SWCK 379
K P+++ +WC+
Sbjct: 515 I----KNPTKVTDFKKTWCR 530
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 129 VYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIF--DDDIED 173
+++E+ + EY + +R+ DD+I DD G GY + G EI+ DD ED
Sbjct: 30 IFDEIDDDEYDKIQDQRKNDDFIVDDDGYGYRDHGGEIWERDDHPED 76
>sp|Q54SV8|DPOLA_DICDI DNA polymerase alpha catalytic subunit OS=Dictyostelium discoideum
GN=pola1 PE=3 SV=1
Length = 1509
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 174/391 (44%), Positives = 247/391 (63%), Gaps = 16/391 (4%)
Query: 415 YIIKIMC-ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYG 473
YII ++ +L V PL Q+TN+ GN ++L R+ER E+LLLH FHEK Y+LPDK Y
Sbjct: 810 YIIFLLIFKLLVFPLTKQLTNLAGNQWDKSLKSNRAERIEYLLLHNFHEKKYLLPDKIYQ 869
Query: 474 KNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICF 533
K+ G G +K AAYSGGLVL+PK FYD++++L+DFNSLYPSIIQEYN+CF
Sbjct: 870 KSSSSGGGGGAKDKDN---HAAYSGGLVLDPKIDFYDRYVVLLDFNSLYPSIIQEYNVCF 926
Query: 534 TTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ 593
TTI ++ D P ++ GILP + LV RR++K M+Q + + Q
Sbjct: 927 TTI--NRVKRDDGKWEEAMPPPSSIEKGILPKVLHGLVSKRREIKKRMEQEK-NKIIKAQ 983
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG 653
YDI+Q+A+KL ANSMYGCLGF +SRF+A PLA LVT KGRE L S+V + Y+VIYG
Sbjct: 984 YDIQQQAVKLIANSMYGCLGFSHSRFYALPLAELVTRKGRENLQKGASIVNKMCYDVIYG 1043
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK--QLELDIDGVYKYMLLLKKKKYAALS 711
DTDSLMI V ++ IG +I+ + N Y+ +E+ +DG++K +LL KKKKYA L
Sbjct: 1044 DTDSLMIYTGVGTFNEAETIGKEIQKKINDQYRGSVMEIGLDGIFKRLLLFKKKKYACLK 1103
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL-DEQSYTDYSLDDRLQNIH 770
++ + C +E KG+D+VRRD+ L + G++V++ IL E+ +SL I
Sbjct: 1104 EFRIDSTTTKCERENKGIDIVRRDYCDLTKDIGQWVLNLILGGEEKIALFSL------IK 1157
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
E+++ ++ + + + + ITK L+K PE
Sbjct: 1158 EYLESVQQQIKDNTLAVEKFIITKTLSKQPE 1188
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 14/161 (8%)
Query: 244 HSSCCVIVQNIDRKIYLLPRSEHL-----KTKEPVSIAQVYSEFDQIATQYKILDFKSRK 298
++SCC+I++ ++R ++ LPR L T V+ + +E Q+ + KI D+K +K
Sbjct: 435 YASCCIIIEKMERNVFFLPRDYKLDQDGESTTIQVTDTMIEAELKQLVDRSKIKDYKLKK 494
Query: 299 IEKKYAFNLPGVPDLS------EYL-EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENL 351
+++ AF+ VP + Y+ ++ Y + P+D+ G TF +G +S +E
Sbjct: 495 VKRTSAFDY-SVPHKNGPVGEQHYVWKLSYPSNQMVFPNDIKGSTFRCAYGITSSPVELF 553
Query: 352 LLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQMEKIR 391
L++RKI GP+WL F + S+ +YE + I+
Sbjct: 554 LIKRKIMGPTWLTVSGITLNFDQKKSFARYEATVKSFKSIK 594
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 126/395 (31%), Positives = 197/395 (49%), Gaps = 61/395 (15%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ VLP+ K+ G E G
Sbjct: 529 VEMARVTGVPISFLLARGQSIKVLSQLLRKGKQKNLVLPNA-----KQSGSEQG------ 577
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL 549
Y G VLE + GFY+K I +DF SLYPSI+ YN+C+ T ++ D+ L
Sbjct: 578 -----TYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYNLCYCT----LVTPEDVRKL 628
Query: 550 CEYLPEHQVDT-------------GILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQY 594
PEH T GILP +++L+ +R++ KA +K+ + D L
Sbjct: 629 -NLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRAKADLKE---AKDPLEKAVL 684
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN--------- 645
D RQ ALK++ANS+YG G + +++ VT+ GR+++ TK LVE+
Sbjct: 685 DGRQLALKISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQ 744
Query: 646 LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKK 704
N EVIYGDTDS+M+ V+D ++ +G + + + K ++L+ + VY LL+ K
Sbjct: 745 YNAEVIYGDTDSVMVQFGVSDVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLINK 804
Query: 705 KKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
K+YA L +N + + KG++ VRRD L +++IL +D
Sbjct: 805 KRYAGL---LWTNPQQFDKMDTKGIETVRRDNCLLVKNLVTESLNKIL---------IDR 852
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ E++KK +DL + L+LL ITK LTK
Sbjct: 853 DVPGAAENVKKTISDLLMNRIDLSLLVITKGLTKT 887
>sp|P61876|DPOL_PYRWO DNA polymerase OS=Pyrococcus woesei GN=pol PE=1 SV=1
Length = 775
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 194/380 (51%), Gaps = 44/380 (11%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP+ IQ++ + G L E+ LL +E++ V P NK EE
Sbjct: 327 LPMEIQLSRLVGQPLWDVSRSSTGNLVEWFLLRKAYERNEVAP------NKPSEEEY--- 377
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
+ R + +Y+GG V EP+KG ++ I+ +DF +LYPSII +N+ T+ + ++ D
Sbjct: 378 ---QRRLRESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNVSPDTLNLEGCKNYD 433
Query: 546 ITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
I C+ +P G +PS + L+E R+++K MK+ + ++ D RQKA
Sbjct: 434 IAPQVGHKFCKDIP------GFIPSLLGHLLEERQKIKTKMKETQDPIEKIL-LDYRQKA 486
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLNYEVIYGDTDSLM 659
+KL ANS YG G+ +R++ + A VTA GR+ + L K L E ++V+Y DTD L
Sbjct: 487 IKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYIDTDGLY 546
Query: 660 ISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
+ + + + K + N KL LEL+ +G YK + KK+YA + G
Sbjct: 547 ATIPGGESEEIKKKALEFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVID----EEG 602
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
K+I +G+++VRRDWS++A E V+ IL +++ ++ + E ++K
Sbjct: 603 KVIT----RGLEIVRRDWSEIAKETQARVLETILKHG-----DVEEAVRIVKEVIQK--- 650
Query: 779 DLDNGFVPLTLLEITKQLTK 798
L N +P L I +Q+T+
Sbjct: 651 -LANYEIPPEKLAIYEQITR 669
>sp|P61875|DPOL_PYRFU DNA polymerase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638
/ JCM 8422 / Vc1) GN=pol PE=1 SV=1
Length = 775
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 117/380 (30%), Positives = 194/380 (51%), Gaps = 44/380 (11%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP+ IQ++ + G L E+ LL +E++ V P NK EE
Sbjct: 327 LPMEIQLSRLVGQPLWDVSRSSTGNLVEWFLLRKAYERNEVAP------NKPSEEEY--- 377
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
+ R + +Y+GG V EP+KG ++ I+ +DF +LYPSII +N+ T+ + ++ D
Sbjct: 378 ---QRRLRESYTGGFVKEPEKGLWEN-IVYLDFRALYPSIIITHNVSPDTLNLEGCKNYD 433
Query: 546 ITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
I C+ +P G +PS + L+E R+++K MK+ + ++ D RQKA
Sbjct: 434 IAPQVGHKFCKDIP------GFIPSLLGHLLEERQKIKTKMKETQDPIEKIL-LDYRQKA 486
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLNYEVIYGDTDSLM 659
+KL ANS YG G+ +R++ + A VTA GR+ + L K L E ++V+Y DTD L
Sbjct: 487 IKLLANSFYGYYGYAKARWYCKECAESVTAWGRKYIELVWKELEEKFGFKVLYIDTDGLY 546
Query: 660 ISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNG 718
+ + + + K + N KL LEL+ +G YK + KK+YA + G
Sbjct: 547 ATIPGGESEEIKKKALEFVKYINSKLPGLLELEYEGFYKRGFFVTKKRYAVID----EEG 602
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
K+I +G+++VRRDWS++A E V+ IL +++ ++ + E ++K
Sbjct: 603 KVIT----RGLEIVRRDWSEIAKETQARVLETILKHG-----DVEEAVRIVKEVIQK--- 650
Query: 779 DLDNGFVPLTLLEITKQLTK 798
L N +P L I +Q+T+
Sbjct: 651 -LANYEIPPEKLAIYEQITR 669
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 126/411 (30%), Positives = 205/411 (49%), Gaps = 53/411 (12%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ V+P+ K+ G E G
Sbjct: 494 VEMARVTGVPISFLLSRGQSIKVLSQLLRRARQKNLVIPNA-----KQAGSEQG------ 542
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----RML---- 541
+ G VLE + GFY+K I +DF SLYPSI+ YN+C+ T+ + R L
Sbjct: 543 -----TFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVIPEDARKLNIPP 597
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQK 599
+ + T E + + GILP +++L+ +R++ KA +K+ + D L D RQ
Sbjct: 598 ESVNRTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKE---AKDPLEKAVLDGRQL 654
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEV 650
ALK++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N EV
Sbjct: 655 ALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHNAEV 714
Query: 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAA 709
IYGDTDS+M+ V+ + +G + + + K ++L+ + VY LL+ KK+YA
Sbjct: 715 IYGDTDSVMVQFGVSAVEEAMNLGREAAEHISGTFTKPIKLEFEKVYYPYLLISKKRYAG 774
Query: 710 LSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN 768
L +K N KM + KG++ VRRD L + +IL +D +
Sbjct: 775 LFWTKPDNFDKM----DTKGIETVRRDNCLLVKNLVNDCLHKIL---------IDRDIPG 821
Query: 769 IHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
+++K +DL + L+LL ITK LTK + +V + L+ R R
Sbjct: 822 AVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKR 872
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 123/408 (30%), Positives = 201/408 (49%), Gaps = 47/408 (11%)
Query: 430 IQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489
+++ V G +S L G+S + LL +K+ V+P+ KG+
Sbjct: 537 VEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNI----------------KGQ 580
Query: 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRML---- 541
+ + G VLE + GFY+K I +DF SLYPSI+ YN+C+ T +P R L
Sbjct: 581 ASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPP 640
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 601
+ + T E + V GILP +++L+ +R++ KA +K+ + + D RQ AL
Sbjct: 641 ESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAV-LDGRQLAL 699
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIY 652
K++ANS+YG G + +++ VT+ GR+++ +TK LVE+ N EVIY
Sbjct: 700 KISANSVYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIY 759
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M+ V+ + K+G + + + K ++L+ + +Y LL+ KK+YA L
Sbjct: 760 GDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGL- 818
Query: 712 ISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+N + + KG++ VRRD L + +IL +D + +
Sbjct: 819 --YWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKIL---------VDRDVPGAVQ 867
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
++K +DL V L+LL ITK LTK E V + L+ R R
Sbjct: 868 YVKNTISDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELAERMRKR 915
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 178/346 (51%), Gaps = 40/346 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRMLQDSD--I 546
Y G V+EP KG+YD I +DF+SLYPSI+Q +N+C+TT+ +++ QD D +
Sbjct: 566 YEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDYSV 625
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYDIRQKALKL 603
T +Y + V G+LP + L+ +R++ KA +K+ P + L D RQ ALK+
Sbjct: 626 TPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKKETDPFKKAVL----DGRQLALKV 681
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGD 654
+ANS+YG G N R +++ VT+ GR+++ TK +VE + + VIYGD
Sbjct: 682 SANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIYGD 741
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ V K+G + + + + ++L+ + VY LL+ KK+YA L +
Sbjct: 742 TDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAGLFWT 801
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ + S KG++ VRRD L S + ++L +D ++
Sbjct: 802 RTDTYDKMDS---KGIETVRRDNCPLVSYVIDTALRKML---------IDQDVEGAQLFT 849
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
KK+ +DL + ++ L ITK L+K K + + L+ R R
Sbjct: 850 KKVISDLLQNKIDMSQLVITKALSKTDYAAK--MAHVELAERMRKR 893
>sp|Q56366|DPOL_THES9 DNA polymerase OS=Thermococcus sp. (strain 9oN-7) GN=pol PE=1 SV=1
Length = 775
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 170/346 (49%), Gaps = 42/346 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q++ + G L E+ LL ++++ + P N
Sbjct: 317 KVTYELGREFFPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAP------N 370
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K + E R++ Y+GG V EP++G +D I+ +DF SLYPSII +N+ T
Sbjct: 371 KPDERELA-------RRRGGYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSS 588
+ ++ D+ C+ P G +PS + L+E R+++K MK L
Sbjct: 423 LNREGCKEYDVAPEVGHKFCKDFP------GFIPSLLGDLLEERQKIKRKMKATVDPLEK 476
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLN 647
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GRE + + + L E
Sbjct: 477 KLL---DYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++V+Y DTD L + D ++V K + N KL LEL+ +G Y + KKK
Sbjct: 534 FKVLYADTDGLHATIPGADAETVKKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + GK+ +G+++VRRDWS++A E V+ IL
Sbjct: 594 YAVID----EEGKITT----RGLEIVRRDWSEIAKETQARVLEAIL 631
>sp|P56689|DPOL_THEGO DNA polymerase OS=Thermococcus gorgonarius GN=pol PE=1 SV=1
Length = 773
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 105/346 (30%), Positives = 170/346 (49%), Gaps = 42/346 (12%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q++ + G L E+ LL +E++ + P N
Sbjct: 317 KVTYELGKEFFPMEAQLSRLVGQSLWDVSRSSTGNLVEWFLLRKAYERNELAP------N 370
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
K + E R++ +Y+GG V EP++G ++ I+ +DF SLYPSII +N+ T
Sbjct: 371 KPDERELA-------RRRESYAGGYVKEPERGLWEN-IVYLDFRSLYPSIIITHNVSPDT 422
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQP--NLSS 588
+ ++ D+ C+ P G +PS + L+E R++VK MK +
Sbjct: 423 LNREGCEEYDVAPQVGHKFCKDFP------GFIPSLLGDLLEERQKVKKKMKATIDPIEK 476
Query: 589 DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT-KSLVENLN 647
LL D RQ+A+K+ ANS YG G+ +R++ + A VTA GR+ + T + + E
Sbjct: 477 KLL---DYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFG 533
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++V+Y DTD + D ++V K + N KL LEL+ +G YK + KKK
Sbjct: 534 FKVLYADTDGFFATIPGADAETVKKKAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKK 593
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + K+ +G+++VRRDWS++A E V+ IL
Sbjct: 594 YAVID----EEDKITT----RGLEIVRRDWSEIAKETQARVLEAIL 631
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 202/405 (49%), Gaps = 62/405 (15%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK 477
K+M +N + +A ++T V N L L G+ + ++L + ++ LP
Sbjct: 495 KLMSIINYIEMA-RVTGVPMNFL---LTKGQQIKILSMMLRRCKQNNFFLP--------- 541
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI- 536
EAN G G Y G V++P +GFY++ I +DF SLYPSI+ +N+C+TT+
Sbjct: 542 ----VIEANSGDGE---GYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLL 594
Query: 537 --PVRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL-- 591
P + + I T +Y G+LP ++ ++ +R++ K MK D
Sbjct: 595 KSPQGVENEDYIRTPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKN---EKDEFKR 651
Query: 592 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL----- 646
M Y+ RQ ALK++ANS+YG G + ++ VTA GR+++ TK VE +
Sbjct: 652 MVYNGRQLALKISANSVYGFTGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGA 711
Query: 647 -------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKY 698
+ +VIYGDTDS+M+ V +IG E +K++ ++L+ + VY
Sbjct: 712 LDGKCPADAKVIYGDTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSP 771
Query: 699 MLLLKKKKYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL---DE 754
LL+ KK+YA L +K + KM C KG++ VRRD L ++ + ++L D+
Sbjct: 772 YLLINKKRYAGLYFTKPDVHDKMDC----KGLETVRRDNCPLVAKVLGVCLEKLLIERDQ 827
Query: 755 QSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
QS D++ K+ +DL + ++LL I+K+LTK+
Sbjct: 828 QSALDFA------------KRTISDLLCNKIDISLLIISKELTKS 860
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 111/329 (33%), Positives = 181/329 (55%), Gaps = 43/329 (13%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTL- 549
Y G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ V LQ+ DITT+
Sbjct: 577 YEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQ 636
Query: 550 ----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMK--QPNLSSDLLMQYDIRQKALKL 603
+++ ++ V GILP +++L+E+R++VK L+K + N++ M + RQ ALK+
Sbjct: 637 GKNNLKFVKKN-VKKGILPLIVEELIEARKKVKLLIKNEKNNITK---MVLNGRQLALKI 692
Query: 604 TANSMYGCLGFPN-SRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIYG 653
+ANS+YG G + + +A +T GR ++ TK VE+ N VIYG
Sbjct: 693 SANSVYGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYG 752
Query: 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNK-LYKQLELDIDGVYKYMLLLKKKKYAALSI 712
DTDS+M+ N+ + +G +K ++L+ + VY LLL KK+YA L
Sbjct: 753 DTDSVMVKFGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLLY 812
Query: 713 SKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHE 771
+ + + KM C KG++ VRRD+ L + + V++++L E++ L + E
Sbjct: 813 TNPNKHDKMDC----KGIETVRRDFCILIQQMMETVLNKLLIEKN---------LNSAIE 859
Query: 772 HMK-KIRTDLDNGFVPLTLLEITKQLTKA 799
+ K KI+ L N + ++LL +TK L K
Sbjct: 860 YTKSKIKELLTNN-IDMSLLVVTKSLGKT 887
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 111/355 (31%), Positives = 178/355 (50%), Gaps = 48/355 (13%)
Query: 488 GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT---------IPV 538
GKG K + G +V+EP GFYD I +DF SLYPSI+ +N+C++T +P
Sbjct: 582 GKGEK---FQGAIVIEPTPGFYDTPIATLDFTSLYPSIMMAHNLCYSTLLSAEEAKKLPP 638
Query: 539 RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQ---PNLSSDLLMQYD 595
+ T ++ + G+LP +++L+ +R++ K +K P + L D
Sbjct: 639 EIYTT---TPFGDHFIKSDTKKGLLPRILEELLSARKKAKDELKNEKDPFKRAVL----D 691
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------L 646
RQ ALK++ANS+YG G + ++ VT+ GRE+L TK +VE
Sbjct: 692 GRQLALKISANSVYGFTGARVGKLPCLEISRSVTSFGREMLDKTKKIVEERYTIANGYKH 751
Query: 647 NYEVIYGDTDSLMISCNVNDYDSVFKIG-NQIKSECNKLYKQLELDIDGVYKYMLLLKKK 705
+ +IYGDTDS+M+ V ++G + K + + LD + VY LL+ KK
Sbjct: 752 DAVIIYGDTDSVMVKFGVKTVAEAMEMGRDAAKFVTTTFIRPINLDFEKVYYPYLLMAKK 811
Query: 706 KYAALSISKLS-NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 764
KYA L +K + +M ++KG+++VRRD L ++ +IL E+
Sbjct: 812 KYAGLYWTKPDIHDRM----DVKGLEMVRRDTCLLVRNVVSTILKKILIEKD-------- 859
Query: 765 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR 819
L++ E+ K + +DL + L++L ITK L+K GKV + L+R R R
Sbjct: 860 -LKSAEEYTKSVISDLLQNRLDLSMLVITKALSKTQYKGKVIHNE--LARKMRAR 911
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1
PE=1 SV=2
Length = 1105
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 168/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++
Sbjct: 639 PTGDEFV-KSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVS 694
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE + N +V+YGDT
Sbjct: 695 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDT 754
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 755 DSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 814
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
S+ KM C KG++ VRRD L + + +IL +D H
Sbjct: 815 RSDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAH 861
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 862 AKDVISDLLCNRIDISQLVITKELTRA 888
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 104/326 (31%), Positives = 166/326 (50%), Gaps = 38/326 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDI-T 547
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 577 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 636
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++A
Sbjct: 637 PTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVSA 693
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE N N +V+YGDTD
Sbjct: 694 NSVYGFTGAEVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLENGYNANAKVVYGDTD 753
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 754 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSQ 813
Query: 716 --SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
++ +M C KG++ VRRD L + + +IL +D H
Sbjct: 814 PDTHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAHA 860
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 861 KDVISDLLCNRIDISQLVITKELTRA 886
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 98/300 (32%), Positives = 161/300 (53%), Gaps = 34/300 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IPVRMLQDSDITTL 549
Y G V+EP++G+YD I +DF+SLYPSI+ +N+C+TT I L + D T
Sbjct: 516 YEGATVIEPERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTEDDYTKT 575
Query: 550 C--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 605
+Y + GILP+ + +L+ +R++ KA +K+ D+L + RQ ALK++A
Sbjct: 576 PNGDYFVHSNLRKGILPTILDELLTARKKAKADLKKETDPFKKDVL---NGRQLALKISA 632
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + +++ VTA GRE++ TK+ V+ + +VIYGDTD
Sbjct: 633 NSVYGFTGATVGKLPCLAISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTD 692
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKL 715
S+M+ D ++ K+G + + + +K ++L+ + VY LL+ KK+YA L ++
Sbjct: 693 SVMVKFGYQDLETCMKLGEEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAGLYWTRP 752
Query: 716 SN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE------QSYTDYSLDDRLQN 768
KM + KG++ VRRD +L V+ IL+E Q + ++ D LQN
Sbjct: 753 EKFDKM----DTKGIETVRRDNCRLVQNVITKVLEFILEERDVPKAQRFVKQTIADLLQN 808
>sp|O93746|DPOL2_AERPE DNA polymerase 2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=polB PE=3 SV=3
Length = 803
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 107/381 (28%), Positives = 192/381 (50%), Gaps = 52/381 (13%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LP +++ V G L + + R E+ L+ + ++P++
Sbjct: 369 LPFGAELSQVSGLPLDQVMAASVGFRLEWRLIREAAKLGELVPNR--------------V 414
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQD 543
+ +GR Y+G +VL PK G ++ I ++DF S+YP+I+ +YN+ T+ P +
Sbjct: 415 ERSEGR----YAGAIVLRPKPGVHED-IAVLDFASMYPNIMVKYNVGPDTLVRPGEEYGE 469
Query: 544 SDITTLCEYLPEHQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA 600
++ T E H+ G +++ + RRQ+++ MK+ S D RQKA
Sbjct: 470 EEVYTAPEV--GHKFRKSPPGFFKKILERFLSWRRQIRSEMKKHPPDSPEYKLLDERQKA 527
Query: 601 LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660
+KL AN+ YG +G+P++R++ + A VTA GR I+ L EVIYGDTDSL +
Sbjct: 528 IKLLANASYGYMGWPHARWYCRECAEAVTAWGRSIIRTAIRKAGELGLEVIYGDTDSLFV 587
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAALSISKLSNGK 719
ND + V ++ ++ E ++ +D VY+ + + KK+Y L++ +GK
Sbjct: 588 K---NDPEKVERLIRFVEEELG-----FDIKVDKVYRRVFFTEAKKRYVGLTV----DGK 635
Query: 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTD 779
+ ++ G + VR DWS+LA E +F +++I+ + D ++ D ++NI E +++ + D
Sbjct: 636 I----DVVGFEAVRGDWSELAKET-QFKVAEIVLKTGSVDEAV-DYVRNIIEKLRRGQVD 689
Query: 780 LDNGFVPLTLLEITKQLTKAP 800
+ L I K LT+ P
Sbjct: 690 MRK-------LVIWKTLTRPP 703
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus
GN=Pold1 PE=2 SV=1
Length = 1103
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/327 (31%), Positives = 167/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 577 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 636
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + Q +D L D RQ ALK++
Sbjct: 637 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAQ---ETDPLRRQVLDGRQLALKVS 692
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDT
Sbjct: 693 PNSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGYDANAKVVYGDT 752
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + + L+ + VY LL+ KK+YA L S
Sbjct: 753 DSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 812
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
S+ +M C KG++ VRRD L + + +IL +D H
Sbjct: 813 RSDAHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL---------VDRDPDGAVAH 859
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 860 AKDVISDLLCNRIDISQLVITKELTRA 886
>sp|P52025|DPOL_METVO DNA polymerase OS=Methanococcus voltae GN=pol PE=3 SV=1
Length = 824
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 198/424 (46%), Gaps = 76/424 (17%)
Query: 426 LPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485
LPL I + + L T S+ EFLLL E++ + P++ + +E
Sbjct: 372 LPLEIMFSRIVNQPLYDTSRMNSSQMVEFLLLKRSFEQNMISPNRPSSSSYRE------- 424
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
R K +Y GG V EP KG + I+ +DF SLYPSI+ +NI S
Sbjct: 425 -----RAKFSYEGGYVREPLKGIQED-IVSLDFMSLYPSILISHNI------------SP 466
Query: 546 ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMK---QPNLSSDLLMQYDIRQKALK 602
T + E ++ GI+P + +L+ R+ +K L+K Q N + + + QK++K
Sbjct: 467 ETVIYEEKERENMELGIIPKTLNELLSRRKHIKMLLKDKIQKNEFDEEYSRLEHEQKSIK 526
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC 662
+ ANS YG L FP +R+++ A +VT GR+ + T E ++VIY DTD
Sbjct: 527 VLANSHYGYLAFPMARWYSDKCAEMVTGLGRKYIQETIEKAEEFGFKVIYADTDGFYAKW 586
Query: 663 NVNDYDSV-----------FKIGNQ---------------IKSECNKLYKQLELDIDGVY 696
DYD + K+ N +K +L + +EL+ +G +
Sbjct: 587 ---DYDKLQKGKKEENDKSDKLSNLPKLSKEELIILTKKFLKGINEELPEGMELEFEGHF 643
Query: 697 KYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
K L + KKKYA + +G ++ +KG++VVRRDWS +A + + VI +L++
Sbjct: 644 KRGLFVTKKKYALIE----DDGHIV----VKGLEVVRRDWSNIAKDTQQAVIRALLED-- 693
Query: 757 YTDYSLDDR-LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRN 815
D +L + ++N +++KK D ++ L I QLTK E K I +++
Sbjct: 694 -GDVNLAKKIIKNTIDNLKKGNIDKND-------LLIHTQLTKNIEEYKSTAPHIEVAKK 745
Query: 816 RRGR 819
+ R
Sbjct: 746 IKQR 749
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 103/334 (30%), Positives = 171/334 (51%), Gaps = 41/334 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPV----------RMLQDSD 545
Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ + LQD
Sbjct: 566 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTREKLRQQENLQDDQ 625
Query: 546 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 601
+ T Y + +V G+LP ++ L+ +R++ K +K + +D + D RQ AL
Sbjct: 626 VERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK---VETDPFKRKVLDGRQLAL 682
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIY 652
K++ANS+YG G + ++ VTA GR ++ TK+ VE+ N VIY
Sbjct: 683 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIY 742
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSEC-NKLYKQLELDIDGVYKYMLLLKKKKYAALS 711
GDTDS+M++ V + ++G + +K ++L+ + VY LL+ KK+YA L
Sbjct: 743 GDTDSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLY 802
Query: 712 ISKL-SNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
++ + KM C KG++ VRRD S L + + ++L E+ D ++
Sbjct: 803 FTRPDTYDKMDC----KGIETVRRDNSPLVANLMNSCLQKLLIERD-PDGAV-------- 849
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++K++ DL + ++ L ITK+L K K
Sbjct: 850 AYVKQVIADLLCNRIDISHLVITKELAKTDYAAK 883
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1
PE=1 SV=2
Length = 1107
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 199/412 (48%), Gaps = 57/412 (13%)
Query: 411 LHSSYI-IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPD 469
L +Y+ ++++ L VL A+++ V G LS L G+ + LL + ++P
Sbjct: 513 LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMP- 571
Query: 470 KQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEY 529
K EG E Y+G V+EP KG+YD I +DF+SLYPSI+ +
Sbjct: 572 ----VVKSEGGED-------------YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAH 614
Query: 530 NICFTTI--P-----VRMLQDSDI-TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
N+C+TT+ P + + +D I T + + V G+LP ++ L+ +R++ KA +
Sbjct: 615 NLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAEL 674
Query: 582 KQPNLSSDLL--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT 639
+ +D L D RQ ALK++ANS+YG G + ++ VT GR+++ T
Sbjct: 675 AK---ETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKT 731
Query: 640 KSLVE---------NLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LE 689
K LVE + + +V+YGDTDS+M V+ +G + + + +
Sbjct: 732 KQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIR 791
Query: 690 LDIDGVYKYMLLLKKKKYAALSISKLSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFV 747
L+ + VY LL+ KK+YA L S + +M C KG++ VRRD L +
Sbjct: 792 LEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDC----KGLEAVRRDNCPLVANLVTAS 847
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ ++L +D + H + + +DL + ++ L ITK+LT+A
Sbjct: 848 LRRLL---------IDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRA 890
>sp|O36363|DPOL_ALHV1 DNA polymerase catalytic subunit OS=Alcelaphine herpesvirus 1
(strain C500) GN=9 PE=3 SV=1
Length = 1026
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 105/350 (30%), Positives = 167/350 (47%), Gaps = 69/350 (19%)
Query: 442 RTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLV 501
R L G+ R LL A E+ Y+LP G +EG Y G V
Sbjct: 545 RVLSDGQQIRVFTCLLAAAQERDYILPMPVTGS--QEG----------------YQGATV 586
Query: 502 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT------IP-VRMLQDSDITTL----- 549
+ P GFY+ ++++DF SLYPSIIQ +N+C++T +P L +D T
Sbjct: 587 INPISGFYNTPVLVVDFASLYPSIIQAHNLCYSTLIKQQDLPKFTNLTANDYETFMISGG 646
Query: 550 -CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKALKLTAN 606
++ +H+ ++ +L S +K + R+ +K ++Q D M+ D +Q A+K+T N
Sbjct: 647 PVHFVKKHKTES-LLASLLKTWLAKRKSIKKELEQ---CQDAKMKTILDKQQLAIKVTCN 702
Query: 607 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYE----------------- 649
S+YG G + +A VT +GR +L TK VEN+ E
Sbjct: 703 SVYGFTGVASGMLPCLMIAETVTLQGRTMLEKTKQFVENVTVEYLQKICNFEVQCLPQHP 762
Query: 650 -----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY--KQLELDIDGVYKYMLLL 702
V+YGDTDSL I C D+V K G+ + S + + ++L+ + V+K ++LL
Sbjct: 763 NPKFRVVYGDTDSLFIKCEGFAMDTVIKFGDALASHTSSVLFASPIKLESEKVFKCLMLL 822
Query: 703 KKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
KK+Y + LSN K++ +KGVD+VR+ E + V+ +L
Sbjct: 823 TKKRYVGI----LSNNKIL----MKGVDLVRKTACVYVQEVTRAVLELLL 864
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 101/327 (30%), Positives = 167/327 (51%), Gaps = 40/327 (12%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 580 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKT 639
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLL--MQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA + + +D L D RQ ALK++
Sbjct: 640 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAK---ETDPLRRQVLDGRQLALKVS 695
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G R ++ VT GR+++ TK LVE + + +V+YGDT
Sbjct: 696 ANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAKVVYGDT 755
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISK 714
DS+M V+ +G + + + + L+ + VY LL+ KK+YA L S
Sbjct: 756 DSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 815
Query: 715 LSNG--KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 816 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPSGAVAH 862
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 863 AQDVISDLLCNRIDISQLVITKELTRA 889
>sp|O29753|DPOL_ARCFU DNA polymerase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16
/ DSM 4304 / JCM 9628 / NBRC 100126) GN=pol PE=3 SV=1
Length = 781
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 166/328 (50%), Gaps = 36/328 (10%)
Query: 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP 537
E ++ GE +Y G VLEP++G ++ + +DF S+YPSI+ +NI T
Sbjct: 373 EAKKIGEIAPNPPEHAESYEGAFVLEPERGLHEN-VACLDFASMYPSIMIAFNISPDTYG 431
Query: 538 VRMLQDSDITTLCEYLPE--HQV---DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLM 592
R C PE H+ G ++ L+E RR++K +K + S
Sbjct: 432 CR--------DDCYEAPEVGHKFRKSPDGFFKRILRMLIEKRRELKVELKNLSPESSEYK 483
Query: 593 QYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIY 652
DI+Q+ LK+ NS YG +G+ +R++ P A TA GR + + + E++ ++V+Y
Sbjct: 484 LLDIKQQTLKVLTNSFYGYMGWNLARWYCHPCAEATTAWGRHFIRTSAKIAESMGFKVLY 543
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSI 712
GDTDS+ ++ + V ++ +++ E +++++D Y + ++KK+YA L+
Sbjct: 544 GDTDSIFVTKAGMTKEDVDRLIDKLHEEL-----PIQIEVDEYYSAIFFVEKKRYAGLT- 597
Query: 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+G+++ +KG++V R DW +LA + + VI IL E+ + + L + +
Sbjct: 598 ---EDGRLV----VKGLEVRRGDWCELAKKVQREVIEVILKEK-----NPEKALSLVKDV 645
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKAP 800
+ +I+ G V L + I K LTK P
Sbjct: 646 ILRIK----EGKVSLEEVVIYKGLTKKP 669
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 159/319 (49%), Gaps = 37/319 (11%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP---------VRMLQDSDI 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ +++ +D I
Sbjct: 587 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVI 646
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM---KQPNLSSDLLMQYDIRQKALKL 603
T +Y + GILP + +L+ +R++ K + K P D+L + RQ ALK+
Sbjct: 647 TPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEKDP-FKRDVL---NGRQLALKI 702
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGD 654
+ANS+YG G + +++ VTA GR ++L TK+ V+ + V+YGD
Sbjct: 703 SANSVYGFTGATVGKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGD 762
Query: 655 TDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVYKYMLLLKKKKYAALSIS 713
TDS+M+ D +G + + L+K + L+ + Y LL+ KK+YA L
Sbjct: 763 TDSVMVKFGTTDLKEAMDLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLF-- 820
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+N + KG+ VRRD L S V+ +IL E+ ++D L + E +
Sbjct: 821 -WTNPDKFDKLDQKGLASVRRDSCSLVSIVMNKVLKKILIER-----NVDGALAFVRETI 874
Query: 774 KKI---RTDLDNGFVPLTL 789
I R D+ + TL
Sbjct: 875 NDILHNRVDISKLIISKTL 893
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 152/315 (48%), Gaps = 47/315 (14%)
Query: 473 GKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNIC 532
KN + N KG++ Y G VLEPK G+Y ++ DF SLYPSI+ +N+C
Sbjct: 527 AKNLNMILPSMNTNFNKGKENVGYKGATVLEPKIGYYATPTVVFDFQSLYPSIMMAHNLC 586
Query: 533 FTTI-----PVRMLQDSDITTLCEYLPEH-----QVDTGILPSEIKKLVESRRQVKALMK 582
++T+ V L DI T+ H V IL S +KK ++ R++VK MK
Sbjct: 587 YSTLVVDENAVIGLHADDILTVHVGPVTHRFVKKTVRESILASLLKKWLDKRKEVKMQMK 646
Query: 583 QPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSL 642
N + + M D +Q ALK T NS+YG G +S +AA VT GRE+L T
Sbjct: 647 MCN-NPVMEMLLDKKQLALKTTCNSVYGVTGATHSLLPCVAIAASVTCLGREMLCKTVDY 705
Query: 643 VENLNY----------------------EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSE 680
V++ Y EVIYGDTDSL ++ ++ +I I S
Sbjct: 706 VDSAMYSDTFFIEKFGLTRGDFSGTFGIEVIYGDTDSLFVTFKNVCPKALKRIAPSIASH 765
Query: 681 C-NKLYKQ-LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQ 738
N L+K ++L+ + + ++L+ KK+Y I KL + ++ KGV++VR+
Sbjct: 766 ITNTLFKHPIKLEFEKILFPLILICKKRY----IGKLDDATLV----FKGVELVRKT--- 814
Query: 739 LASEAGKFVISQILD 753
+ + K V+ I+D
Sbjct: 815 -SCDFVKVVVKDIID 828
>sp|P30320|DPOL_PBCVN DNA polymerase OS=Paramecium bursaria Chlorella virus NY2A GN=DPO
PE=3 SV=1
Length = 913
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 162/329 (49%), Gaps = 45/329 (13%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTL--CEYL 553
Y G VL+ KKG Y I +DF SLYPSII+ +N+ P ++ D L EY
Sbjct: 464 YEGATVLDAKKGAYFTSIAALDFASLYPSIIRAHNMS----PETLVMDKRFENLPGIEYY 519
Query: 554 -----------PEHQVDTG----ILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDI 596
P+ +TG ++P+ + L + R+Q K M + + D + YD
Sbjct: 520 EIETGLGTFKYPQKNDETGEGQGVVPALLDDLAKFRKQAKKHMAEAKKNDDEFREALYDA 579
Query: 597 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL--NYEVIYGD 654
+Q++ K+ NS+YG LG P+AA VTA GR+++ +T V L EVIYGD
Sbjct: 580 QQRSYKIVMNSVYGFLGASRGFIPCVPIAASVTATGRKMIEHTAKRVTELLPGSEVIYGD 639
Query: 655 TDSLMISC-----NVNDYDSVFKIGNQIKSECNKLYKQL-ELDIDGVYKYMLLLKKKKYA 708
TDS+MI ++D D FK+ + E K +K +L+ + +Y +L KK+YA
Sbjct: 640 TDSVMIRMKLPDDKIHDMDEQFKMAKWLAGEITKDFKAPNDLEFEKIYYPYILYSKKRYA 699
Query: 709 ALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ 767
A+ GK+ ++KG+ +VRRD+S + E K + IL ++ D
Sbjct: 700 AIKFEDPDEKGKV----DVKGLALVRRDFSPITREILKESLDTILFKK--------DTPT 747
Query: 768 NIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
+ E ++ IR LDN + P+ ++K L
Sbjct: 748 AVTETVECIRKVLDNEY-PMEKFTMSKTL 775
>sp|Q6DFI2|TM147_XENLA Transmembrane protein 147 OS=Xenopus laevis GN=tmem147 PE=2 SV=1
Length = 225
Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/97 (54%), Positives = 70/97 (72%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
ML LATF PT + +G D G+ +K ++DL D +G +LV+S GKG KI+ A +GWA
Sbjct: 50 MLFLATFFPTWEGAAGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKGEYKIMVAAMGWA 109
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AE++++R L LWVGARG EFDWKYIQ S+DSNI L+
Sbjct: 110 TAELVMSRCLPLWVGARGIEFDWKYIQMSIDSNISLV 146
>sp|P07918|DPOL_HHV21 DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain
186) GN=UL30 PE=3 SV=1
Length = 1240
Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 167/375 (44%), Gaps = 81/375 (21%)
Query: 432 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--YGKNKKEGEETGEANKGK 489
+ + G ++RT+ G+ R LL +K ++LPD Q + KE + +G+
Sbjct: 602 VARLAGINITRTIYDGQQIRVFTCLLRLAGQKGFILPDTQGRFRGLDKEAPKRPAVPRGE 661
Query: 490 GRKK---------------------------------AAYSGGLVLEPKKGFYDKFIILM 516
G + Y G VL+P GF+ +++
Sbjct: 662 GERPGDGNGDEDKDDDEDGDEDGDEREEVARETGGRHVGYQGARVLDPTSGFHVDPVVVF 721
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYL-----------PEHQVDTGILPS 565
DF SLYPSIIQ +N+CF+T+ +R + + +YL + V +L
Sbjct: 722 DFASLYPSIIQAHNLCFSTLSLRPEAVAHLEADRDYLEIEVGGRRLFFVKAHVRESLLSI 781
Query: 566 EIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLA 625
++ + R+Q+++ + Q +L+ D +Q A+K+ NS+YG G + +A
Sbjct: 782 LLRDWLAMRKQIRSRIPQSPPEEAVLL--DKQQAAIKVVCNSVYGFTGVQHGLLPCLHVA 839
Query: 626 ALVTAKGREILLNTKSLVEN-----------------------LNYEVIYGDTDSLMISC 662
A VT GRE+LL T++ V + +IYGDTDS+ + C
Sbjct: 840 ATVTTIGREMLLATRAYVHARWAEFDQLLADFPEAAGMRAPGPYSMRIIYGDTDSIFVLC 899
Query: 663 NVNDYDSVFKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
+++ +G+++ S ++ ++L+ + + +LL+ KKKY I + GKM
Sbjct: 900 RGLTGEALVAMGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKY----IGVICGGKM 955
Query: 721 ICSQEIKGVDVVRRD 735
+ IKGVD+VR++
Sbjct: 956 L----IKGVDLVRKN 966
>sp|P89453|DPOL_HHV2H DNA polymerase catalytic subunit OS=Human herpesvirus 2 (strain
HG52) GN=UL30 PE=3 SV=1
Length = 1240
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 165/375 (44%), Gaps = 81/375 (21%)
Query: 432 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ--YGKNKKEGEETGEANKGK 489
+ + G ++RT+ G+ R LL +K ++LPD Q + KE + +G+
Sbjct: 602 VARLAGINITRTIYDGQQIRVFTCLLRLAGQKGFILPDTQGRFRGLDKEAPKRPAVPRGE 661
Query: 490 GRKK---------------------------------AAYSGGLVLEPKKGFYDKFIILM 516
G + Y G VL+P GF+ +++
Sbjct: 662 GERPGDGNGDEDKDDDEDGDEDGDEREEVARETGGRHVGYQGARVLDPTSGFHVDPVVVF 721
Query: 517 DFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYL-----------PEHQVDTGILPS 565
DF SLYPSIIQ +N+CF+T+ +R + + +YL + V +L
Sbjct: 722 DFASLYPSIIQAHNLCFSTLSLRPEAVAHLEADRDYLEIEVGGRRLFFVKAHVRESLLSI 781
Query: 566 EIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLA 625
++ + R+Q+++ + Q +L+ D +Q A+K+ NS+YG G + +A
Sbjct: 782 LLRDWLAMRKQIRSRIPQSTPEEAVLL--DKQQAAIKVVCNSVYGFTGVQHGLLPCLHVA 839
Query: 626 ALVTAKGREILLNTKSLVEN-----------------------LNYEVIYGDTDSLMISC 662
A VT GRE+LL T++ V + +IYGDTDS+ + C
Sbjct: 840 ATVTTIGREMLLATRAYVHARWAEFDQLLADFPEAAGMRAPGPYSMRIIYGDTDSIFVLC 899
Query: 663 NVNDYDSVFKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720
+ +G+++ S ++ ++L+ + + +LL+ KKKY I + GKM
Sbjct: 900 RGLTAAGLVAMGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKY----IGVICGGKM 955
Query: 721 ICSQEIKGVDVVRRD 735
+ IKGVD+VR++
Sbjct: 956 L----IKGVDLVRKN 966
>sp|P04293|DPOL_HHV11 DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain 17)
GN=UL30 PE=1 SV=2
Length = 1235
Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 166/373 (44%), Gaps = 81/373 (21%)
Query: 432 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE------- 484
+ + G ++RT+ G+ R LL +K ++LPD Q G+ + G E +
Sbjct: 601 VARLAGINITRTIYDGQQIRVFTCLLRLADQKGFILPDTQ-GRFRGAGGEAPKRPAAARE 659
Query: 485 --------------------------ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
A + GR Y G VL+P GF+ +++ DF
Sbjct: 660 DEERPEEEGEDEDEREEGGGEREPEGARETAGRH-VGYQGARVLDPTSGFHVNPVVVFDF 718
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYL-----------PEHQVDTGILPSEI 567
SLYPSIIQ +N+CF+T+ +R + + +YL + V +L +
Sbjct: 719 ASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILL 778
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
+ + R+Q+++ + Q + +L+ D +Q A+K+ NS+YG G + +AA
Sbjct: 779 RDWLAMRKQIRSRIPQSSPEEAVLL--DKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAAT 836
Query: 628 VTAKGREILLNTKSLVEN-----------------------LNYEVIYGDTDSLMISCNV 664
VT GRE+LL T+ V + +IYGDTDS+ + C
Sbjct: 837 VTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRG 896
Query: 665 NDYDSVFKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMIC 722
+ +G+++ S ++ ++L+ + + +LL+ KKKY I + GKM+
Sbjct: 897 LTAAGLTAVGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKY----IGVIYGGKML- 951
Query: 723 SQEIKGVDVVRRD 735
IKGVD+VR++
Sbjct: 952 ---IKGVDLVRKN 961
>sp|P07917|DPOL_HHV1A DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
Angelotti) GN=UL30 PE=1 SV=1
Length = 1235
Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 166/373 (44%), Gaps = 81/373 (21%)
Query: 432 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE------- 484
+ + G ++RT+ G+ R LL +K ++LPD Q G+ + G E +
Sbjct: 601 VARLAGINITRTIYDGQQIRVFTCLLRLADQKGFILPDTQ-GRFRGAGGEAPKRPAAARE 659
Query: 485 --------------------------ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
A + GR Y G VL+P GF+ +++ DF
Sbjct: 660 DEERPEEEGEDEDEREEGGGEREPEGARETAGRH-VGYQGARVLDPTSGFHVNPVVVFDF 718
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYL-----------PEHQVDTGILPSEI 567
SLYPSIIQ +N+CF+T+ +R + + +YL + V +L +
Sbjct: 719 ASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILL 778
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
+ + R+Q+++ + Q + +L+ D +Q A+K+ NS+YG G + +AA
Sbjct: 779 RDWLAMRKQIRSRIPQSSPEEAVLL--DKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAAT 836
Query: 628 VTAKGREILLNTKSLVEN-----------------------LNYEVIYGDTDSLMISCNV 664
VT GRE+LL T+ V + +IYGDTDS+ + C
Sbjct: 837 VTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRG 896
Query: 665 NDYDSVFKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMIC 722
+ +G+++ S ++ ++L+ + + +LL+ KKKY I + GKM+
Sbjct: 897 LTAAGLTAVGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKY----IGVIYGGKML- 951
Query: 723 SQEIKGVDVVRRD 735
IKGVD+VR++
Sbjct: 952 ---IKGVDLVRKN 961
>sp|Q28FY5|TM147_XENTR Transmembrane protein 147 OS=Xenopus tropicalis GN=tmem147 PE=2
SV=1
Length = 225
Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats.
Identities = 53/97 (54%), Positives = 69/97 (71%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
ML LATF PT + G D G+ +K ++DL D +G +LV+S GKG KI+ A +GWA
Sbjct: 50 MLFLATFFPTWEGAVGAYDFIGEFMKATVDLADLLGLHLVMSRNAGKGEYKIMVAAMGWA 109
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AE++++R L LWVGARG EFDWKYIQ S+DSNI L+
Sbjct: 110 TAELVMSRCLPLWVGARGIEFDWKYIQMSIDSNISLV 146
>sp|P09252|DPOL_VZVD DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Dumas) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 102/397 (25%), Positives = 172/397 (43%), Gaps = 63/397 (15%)
Query: 440 LSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN----------------KKEGEETG 483
L++ + G+ R LL + ++LPD Y E E
Sbjct: 590 LTKAIYDGQQVRIYTCLLGLASSRGFILPDGGYPATFEYKDVIPDVGDVEEEMDEDESVS 649
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PV 538
GR Y G V +P GFY ++++DF SLYPSIIQ +N+CFTT+ V
Sbjct: 650 PTGTSSGRN-VGYKGARVFDPDTGFYIDPVVVLDFASLYPSIIQAHNLCFTTLTLNFETV 708
Query: 539 RMLQDSDITTLCE-----YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ 593
+ L SD T + V +L +K + R+ ++A + P SSD +
Sbjct: 709 KRLNPSDYATFTVGGKRLFFVRSNVRESLLGVLLKDWLAMRKAIRA--RIPGSSSDEAVL 766
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-------- 645
D +Q A+K+ NS+YG G +AA VT GR++LL+T+ + N
Sbjct: 767 LDKQQAAIKVVCNSVYGFTGVAQGFLPCLYVAATVTTIGRQMLLSTRDYIHNNWAAFERF 826
Query: 646 ----------------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNK--LYKQ 687
+VIYGDTDS+ I + + KIG ++ +
Sbjct: 827 ITAFPDIESSVLSQKAYEVKVIYGDTDSVFIRFKGVSVEGIAKIGEKMAHIISTALFCPP 886
Query: 688 LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFV 747
++L+ + + +LL+ KKKY I + GK++ +KGVD+VR++ Q ++ + +
Sbjct: 887 IKLECEKTFIKLLLITKKKY----IGVIYGGKVL----MKGVDLVRKNNCQFINDYARKL 938
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGF 784
+ +L + + + + + +I E ++ GF
Sbjct: 939 VELLLYDDTVSRAAAEASCVSIAEWNRRAMPSGMAGF 975
>sp|Q4JQU7|DPOL_VZVO DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Oka vaccine) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 102/397 (25%), Positives = 172/397 (43%), Gaps = 63/397 (15%)
Query: 440 LSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN----------------KKEGEETG 483
L++ + G+ R LL + ++LPD Y E E
Sbjct: 590 LTKAIYDGQQVRIYTCLLGLASSRGFILPDGGYPATFEYKDVIPDVGDVEEEMDEDESVS 649
Query: 484 EANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PV 538
GR Y G V +P GFY ++++DF SLYPSIIQ +N+CFTT+ V
Sbjct: 650 PTGTSSGRN-VGYKGARVFDPDTGFYIDPVVVLDFASLYPSIIQAHNLCFTTLTLNFETV 708
Query: 539 RMLQDSDITTLCE-----YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ 593
+ L SD T + V +L +K + R+ ++A + P SSD +
Sbjct: 709 KRLNPSDYATFTVGGKRLFFVRSNVRESLLGVLLKDWLAMRKAIRA--RIPGSSSDEAVL 766
Query: 594 YDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-------- 645
D +Q A+K+ NS+YG G +AA VT GR++LL+T+ + N
Sbjct: 767 LDKQQAAIKVVCNSVYGFTGVAQGFLPCLYVAATVTTIGRQMLLSTRDYIHNNWAAFERF 826
Query: 646 ----------------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNK--LYKQ 687
+VIYGDTDS+ I + + KIG ++ +
Sbjct: 827 ITAFPDIESSVLSQKAYEVKVIYGDTDSVFIRFKGVGVEGIAKIGEKMAHIISTALFCPP 886
Query: 688 LELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFV 747
++L+ + + +LL+ KKKY I + GK++ +KGVD+VR++ Q ++ + +
Sbjct: 887 IKLECEKTFIKLLLITKKKY----IGVIYGGKVL----MKGVDLVRKNNCQFINDYARKL 938
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGF 784
+ +L + + + + + +I E ++ GF
Sbjct: 939 VELLLYDDTVSRAAAEASCVSIAEWNRRAMPSGMAGF 975
>sp|Q9HH06|DPOL_PYRGL DNA polymerase OS=Pyrococcus glycovorans GN=pol PE=3 SV=1
Length = 775
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 104/346 (30%), Positives = 170/346 (49%), Gaps = 41/346 (11%)
Query: 418 KIMCELN--VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
K+ EL P+ Q++ + G L E+ LL +E++ + P+K
Sbjct: 317 KVTYELGREFFPMEAQLSRLVGQPLWDVSRSSTGNLVEWYLLRKAYERNELAPNKP---- 372
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+ + + R + +Y+GG V EP+KG ++ + L DF SLYPSII +N+ T
Sbjct: 373 --------DEREYERRLRESYAGGYVKEPEKGLWEGLVSL-DFRSLYPSIIITHNVSPDT 423
Query: 536 IPVRMLQDSDITT-----LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 590
+ ++ D+ C+ P G +PS +K+L++ R+++K MK S D
Sbjct: 424 LNREGCREYDVAPEVKHKFCKDFP------GFIPSLLKRLLDERQEIKRKMKA---SKDP 474
Query: 591 L--MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL-LNTKSLVENLN 647
+ D RQ+A+K+ ANS YG G+ +R++ + A VTA GRE + K L E
Sbjct: 475 IEKKMLDYRQRAIKILANSYYGYYGYAKARWYCKECAESVTAWGREYIEFVRKELEEKFG 534
Query: 648 YEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKK 706
++V+Y DTD L + + + + + N KL LEL+ +G Y + KKK
Sbjct: 535 FKVLYIDTDGLYATIPGAKPEEIKRKALEFVEYINAKLPGLLELEYEGFYVRGFFVTKKK 594
Query: 707 YAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQIL 752
YA + GK+I +G+++VRRDWS++A E V+ IL
Sbjct: 595 YALID----EEGKIIT----RGLEIVRRDWSEIAKETQAKVLEAIL 632
>sp|P09854|DPOL_HHV1S DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
SC16) GN=UL30 PE=3 SV=1
Length = 1235
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 166/373 (44%), Gaps = 81/373 (21%)
Query: 432 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE------- 484
+ + G ++RT+ G+ R LL +K ++LPD Q G+ + G E +
Sbjct: 601 VARLAGINITRTIYDGQQIRVFTCLLRLADQKGFILPDTQ-GRFRGAGGEAPKRPAAARE 659
Query: 485 --------------------------ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
A + GR Y G VL+P GF+ +++ DF
Sbjct: 660 DEERPEEEGEDEDEREEGGGEREPDGARETAGRH-VGYQGARVLDPTSGFHVNPVVVFDF 718
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYL-----------PEHQVDTGILPSEI 567
SLYPSIIQ +N+CF+T+ +R + + +YL + V +L +
Sbjct: 719 ASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILL 778
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
+ + R+Q+++ + Q + +L+ D +Q A+K+ NS+YG G + +AA
Sbjct: 779 RDWLAMRKQIRSRIPQSSPEEAVLL--DKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAAT 836
Query: 628 VTAKGREILLNTKSLVEN-----------------------LNYEVIYGDTDSLMISCNV 664
VT GRE+LL T+ V + +IYGDTDS+ + C
Sbjct: 837 VTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRG 896
Query: 665 NDYDSVFKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMIC 722
+ +G+++ S ++ ++L+ + + +LL+ KKKY I + GKM+
Sbjct: 897 LTAAGLTAMGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKY----IGVIYGGKML- 951
Query: 723 SQEIKGVDVVRRD 735
IKGVD+VR++
Sbjct: 952 ---IKGVDLVRKN 961
>sp|P04292|DPOL_HHV1K DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
KOS) GN=UL30 PE=1 SV=1
Length = 1235
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/373 (25%), Positives = 166/373 (44%), Gaps = 81/373 (21%)
Query: 432 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE------- 484
+ + G ++RT+ G+ R LL +K ++LPD Q G+ + G E +
Sbjct: 601 VARLAGINITRTIYDGQQIRVFTCLLRLADQKGFILPDTQ-GRFRGAGGEAPKRPAAARE 659
Query: 485 --------------------------ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDF 518
A + GR Y G VL+P GF+ +++ DF
Sbjct: 660 DEERPEEEGEDEDEREEGGGEREPEGARETAGRH-VGYQGAKVLDPTSGFHVNPVVVFDF 718
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYL-----------PEHQVDTGILPSEI 567
SLYPSIIQ +N+CF+T+ +R + + +YL + V +L +
Sbjct: 719 ASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILL 778
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
+ + R+Q+++ + Q + +L+ D +Q A+K+ NS+YG G + +AA
Sbjct: 779 RDWLAMRKQIRSRIPQSSPEEAVLL--DKQQAAIKVVCNSVYGFTGVQHGLLPCLHVAAT 836
Query: 628 VTAKGREILLNTKSLVEN-----------------------LNYEVIYGDTDSLMISCNV 664
VT GRE+LL T+ V + +IYGDTDS+ + C
Sbjct: 837 VTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRG 896
Query: 665 NDYDSVFKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMIC 722
+ +G+++ S ++ ++L+ + + +LL+ KKKY I + GKM+
Sbjct: 897 LTAAGLTAMGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKY----IGVIYGGKML- 951
Query: 723 SQEIKGVDVVRRD 735
IKGVD+VR++
Sbjct: 952 ---IKGVDLVRKN 961
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,658,757
Number of Sequences: 539616
Number of extensions: 21298834
Number of successful extensions: 1055607
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7417
Number of HSP's successfully gapped in prelim test: 1557
Number of HSP's that attempted gapping in prelim test: 361979
Number of HSP's gapped (non-prelim): 320423
length of query: 1030
length of database: 191,569,459
effective HSP length: 128
effective length of query: 902
effective length of database: 122,498,611
effective search space: 110493747122
effective search space used: 110493747122
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 67 (30.4 bits)