Query psy6283
Match_columns 1030
No_of_seqs 527 out of 1649
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 22:29:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0970|consensus 100.0 1E-187 3E-192 1640.3 54.3 718 93-825 11-1148(1429)
2 TIGR00592 pol2 DNA polymerase 100.0 1E-131 3E-136 1253.7 60.5 595 209-821 305-1114(1172)
3 PTZ00166 DNA polymerase delta 100.0 4.3E-85 9.4E-90 819.1 49.9 388 402-818 461-866 (1054)
4 KOG0969|consensus 100.0 1.4E-81 3E-86 722.2 23.4 492 274-817 344-873 (1066)
5 PHA03036 DNA polymerase; Provi 100.0 5.4E-76 1.2E-80 716.0 38.3 398 402-820 454-922 (1004)
6 cd05534 POLBc_zeta DNA polymer 100.0 1.1E-75 2.3E-80 680.2 31.5 347 447-819 1-384 (451)
7 PRK05761 DNA polymerase I; Rev 100.0 3.3E-74 7.1E-79 704.7 36.8 395 399-820 313-719 (787)
8 PRK05762 DNA polymerase II; Re 100.0 4.2E-74 9E-79 707.3 35.7 367 401-820 326-718 (786)
9 COG0417 PolB DNA polymerase el 100.0 5.9E-73 1.3E-77 696.6 38.8 385 402-821 329-717 (792)
10 cd05533 POLBc_delta DNA polyme 100.0 5.7E-73 1.2E-77 648.4 29.8 310 495-818 2-330 (393)
11 cd05532 POLBc_alpha DNA polyme 100.0 2.1E-72 4.6E-77 645.4 28.4 318 491-818 3-324 (400)
12 PHA02528 43 DNA polymerase; Pr 100.0 1.1E-68 2.5E-73 657.5 35.1 379 402-816 303-795 (881)
13 cd05536 POLBc_B3 DNA polymeras 100.0 6.3E-69 1.4E-73 611.3 29.2 304 494-819 2-307 (371)
14 cd05530 POLBc_B1 DNA polymeras 100.0 9.2E-68 2E-72 599.5 28.7 308 492-819 9-323 (372)
15 PF00136 DNA_pol_B: DNA polyme 100.0 8.6E-69 1.9E-73 627.7 20.2 355 447-818 1-382 (466)
16 cd05537 POLBc_Pol_II DNA polym 100.0 5.9E-67 1.3E-71 593.9 26.5 293 495-821 2-321 (371)
17 cd05538 POLBc_Pol_II_B DNA pol 100.0 2.1E-64 4.5E-69 568.6 26.6 262 495-802 2-266 (347)
18 cd00145 POLBc DNA polymerase t 100.0 4.9E-63 1.1E-67 554.1 28.3 268 495-776 2-271 (323)
19 KOG0968|consensus 100.0 9.5E-63 2.1E-67 582.3 27.9 395 402-821 867-1295(1488)
20 cd05531 POLBc_B2 DNA polymeras 100.0 2.6E-62 5.7E-67 552.8 25.6 290 494-820 3-305 (352)
21 PHA03334 putative DNA polymera 100.0 2.3E-50 5E-55 489.9 26.3 341 401-755 533-996 (1545)
22 cd05535 POLBc_epsilon DNA poly 100.0 4.5E-48 9.8E-53 449.2 26.0 251 558-821 219-535 (621)
23 smart00486 POLBc DNA polymeras 100.0 1E-45 2.2E-50 428.4 24.1 254 402-663 199-470 (471)
24 KOG1798|consensus 100.0 2.6E-32 5.7E-37 329.2 18.9 399 402-822 429-1042(2173)
25 KOG3236|consensus 100.0 1.7E-33 3.7E-38 284.3 6.2 108 1-111 50-157 (225)
26 PF09767 DUF2053: Predicted me 100.0 2.3E-32 4.9E-37 275.6 7.2 96 1-98 49-146 (159)
27 PHA02523 43B DNA polymerase su 100.0 2.5E-31 5.4E-36 292.4 15.5 217 592-820 37-305 (391)
28 PHA02524 43A DNA polymerase su 100.0 2.2E-28 4.7E-33 284.2 16.4 220 335-585 237-479 (498)
29 PF12254 DNA_pol_alpha_N: DNA 99.9 7.1E-23 1.5E-27 177.9 4.3 64 106-169 1-67 (67)
30 PHA02563 DNA polymerase; Provi 99.8 2.1E-18 4.6E-23 206.2 12.7 206 493-730 235-543 (630)
31 PF03104 DNA_pol_B_exo1: DNA p 99.4 8.5E-14 1.8E-18 155.3 -0.4 136 242-386 3-142 (325)
32 TIGR00592 pol2 DNA polymerase 99.2 3.7E-13 7.9E-18 173.5 -9.4 191 404-608 407-620 (1172)
33 PF08490 DUF1744: Domain of un 98.5 3.9E-06 8.5E-11 97.6 17.1 263 423-710 119-396 (396)
34 PF03175 DNA_pol_B_2: DNA poly 98.3 6.8E-09 1.5E-13 122.7 -10.4 34 493-527 203-236 (459)
35 PHA02735 putative DNA polymera 98.1 1.5E-05 3.2E-10 90.4 11.1 228 272-539 64-313 (716)
36 PTZ00121 MAEBL; Provisional 97.2 0.0036 7.7E-08 80.0 14.1 8 45-52 49-56 (2084)
37 PTZ00121 MAEBL; Provisional 97.0 0.014 3.1E-07 74.8 16.1 8 704-711 966-973 (2084)
38 KOG1798|consensus 96.3 0.055 1.2E-06 70.0 14.9 267 417-709 1583-1867(2173)
39 PTZ00266 NIMA-related protein 95.4 0.059 1.3E-06 69.6 10.2 7 513-519 181-187 (1021)
40 PTZ00266 NIMA-related protein 95.3 0.091 2E-06 68.0 11.4 6 277-282 58-63 (1021)
41 KOG4364|consensus 95.1 0.17 3.6E-06 61.3 11.8 11 804-814 162-172 (811)
42 KOG4676|consensus 93.8 0.017 3.6E-07 65.9 -0.1 12 804-815 198-209 (479)
43 cd05776 DNA_polB_alpha_exo ina 92.1 0.075 1.6E-06 58.0 1.9 31 401-431 204-234 (234)
44 PHA03144 helicase-primase prim 89.1 11 0.00023 47.5 16.4 225 502-793 402-644 (746)
45 KOG1029|consensus 88.1 4.7 0.0001 50.3 12.3 29 442-470 59-90 (1118)
46 KOG1029|consensus 87.5 2.7 5.9E-05 52.2 9.9 11 434-444 81-91 (1118)
47 KOG4676|consensus 86.2 0.041 8.9E-07 62.9 -5.7 9 606-614 104-112 (479)
48 PHA03181 helicase-primase prim 85.9 18 0.00039 45.6 15.7 226 502-791 411-656 (764)
49 KOG0163|consensus 85.8 3.3 7.2E-05 51.3 9.4 43 403-445 467-509 (1259)
50 KOG0334|consensus 85.8 0.88 1.9E-05 58.3 4.8 18 1007-1024 140-157 (997)
51 KOG0151|consensus 84.9 0.21 4.6E-06 60.9 -1.0 11 434-444 345-355 (877)
52 KOG1847|consensus 81.6 0.19 4.1E-06 60.6 -3.1 23 510-532 351-373 (878)
53 KOG0151|consensus 78.7 0.27 5.8E-06 60.1 -3.1 13 458-470 388-400 (877)
54 cd05777 DNA_polB_delta_exo DED 78.4 1.7 3.6E-05 47.4 3.1 72 355-428 146-228 (230)
55 KOG4661|consensus 77.0 16 0.00036 44.2 10.6 29 45-73 6-34 (940)
56 KOG0163|consensus 76.8 8.8 0.00019 47.9 8.5 13 726-738 823-835 (1259)
57 KOG4368|consensus 76.8 0.16 3.5E-06 60.6 -5.5 9 860-868 593-601 (757)
58 KOG1847|consensus 76.7 0.85 1.8E-05 55.3 0.2 22 343-365 227-248 (878)
59 PF07946 DUF1682: Protein of u 68.7 13 0.00028 42.8 7.3 17 1007-1023 304-320 (321)
60 KOG2002|consensus 66.0 11 0.00025 48.4 6.5 12 744-755 760-771 (1018)
61 KOG2548|consensus 65.0 2.2 4.8E-05 50.9 0.2 18 515-532 201-218 (653)
62 KOG4246|consensus 64.3 2.9 6.4E-05 52.2 1.0 14 785-798 241-254 (1194)
63 PHA03140 helicase-primase prim 64.2 1.7E+02 0.0038 37.3 15.8 225 501-788 408-663 (772)
64 PRK00247 putative inner membra 61.2 65 0.0014 38.8 11.2 9 785-793 247-255 (429)
65 KOG0415|consensus 56.3 4.2 9E-05 46.7 0.4 18 333-350 62-80 (479)
66 PF05262 Borrelia_P83: Borreli 55.5 2.8E+02 0.006 34.1 15.3 68 618-685 19-96 (489)
67 KOG4661|consensus 52.8 82 0.0018 38.6 10.0 10 602-611 392-401 (940)
68 KOG4246|consensus 50.9 4.3 9.3E-05 50.8 -0.6 8 502-509 99-106 (1194)
69 KOG0835|consensus 50.3 1.2 2.6E-05 50.6 -4.9 11 641-651 127-137 (367)
70 cd05780 DNA_polB_Kod1_like_exo 50.0 14 0.00029 39.3 3.0 65 356-422 120-194 (195)
71 KOG2891|consensus 46.7 1.9E+02 0.0041 32.7 11.0 22 502-523 19-40 (445)
72 KOG0969|consensus 45.2 47 0.001 42.2 6.8 162 209-386 72-256 (1066)
73 KOG2002|consensus 41.9 4.9 0.00011 51.5 -2.1 10 228-237 163-172 (1018)
74 KOG2891|consensus 39.5 1.5E+02 0.0032 33.6 8.8 11 804-814 269-279 (445)
75 TIGR02501 type_III_yscE type I 38.9 45 0.00098 30.0 4.0 47 563-611 15-65 (67)
76 cd05784 DNA_polB_II_exo DEDDy 38.8 25 0.00055 37.5 3.0 20 401-420 173-192 (193)
77 KOG2888|consensus 38.8 14 0.00029 42.3 0.9 9 653-661 150-158 (453)
78 KOG2888|consensus 37.6 4.8 0.0001 45.7 -2.7 15 567-581 132-146 (453)
79 cd05160 DEDDy_DNA_polB_exo DED 34.9 26 0.00057 36.8 2.4 20 401-420 179-198 (199)
80 cd05781 DNA_polB_B3_exo DEDDy 33.7 36 0.00077 36.1 3.1 21 402-422 167-187 (188)
81 cd05783 DNA_polB_B1_exo DEDDy 31.4 36 0.00079 36.6 2.7 23 399-421 180-202 (204)
82 KOG2985|consensus 27.2 46 0.001 36.9 2.6 15 644-658 23-37 (306)
83 cd05785 DNA_polB_like2_exo Unc 25.4 58 0.0013 35.1 3.0 20 401-420 187-206 (207)
84 KOG2253|consensus 24.3 7.9E+02 0.017 31.3 12.3 6 788-793 148-153 (668)
85 PF09851 SHOCT: Short C-termin 22.8 1.3E+02 0.0027 22.9 3.5 25 104-143 3-27 (31)
86 PF08988 DUF1895: Protein of u 21.0 2.3E+02 0.0051 25.6 5.4 40 564-604 17-60 (68)
87 COG3462 Predicted membrane pro 20.8 4.2E+02 0.009 26.3 7.3 27 103-144 88-114 (117)
88 PF09756 DDRGK: DDRGK domain; 20.7 33 0.00071 36.8 0.0 21 818-838 4-24 (188)
89 KOG3657|consensus 20.7 89 0.0019 40.1 3.6 29 401-431 357-385 (1075)
No 1
>KOG0970|consensus
Probab=100.00 E-value=1.2e-187 Score=1640.31 Aligned_cols=718 Identities=49% Similarity=0.818 Sum_probs=636.0
Q ss_pred chhhhhhccHHHHHHHHHHHhhcCcceeeeeccccccccccChHHHHHHHHhhccCCeEEeCCCCccccccccccccccc
Q psy6283 93 NICLIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIE 172 (1030)
Q Consensus 93 n~slv~~~~~~~al~~l~~~~~~g~~~~~~v~~~~~vy~~vde~~y~~~v~~r~~dd~v~dd~g~gy~~~gre~~d~~~~ 172 (1030)
..+..+|++|++||++||+|| |.+.+|+|+++++|||+|||+||.+||++||+|||||||||.||||||+|+||.+.+
T Consensus 11 rR~~~~ks~r~~alerLk~ar--~s~~~Ye~e~~~~vYD~VDeeEY~k~v~~r~~DdfvVdDdG~GYvd~G~deeD~~~~ 88 (1429)
T KOG0970|consen 11 RRSRGSKSSRLAALERLKAAR--TSGDKYEVEEVEDVYDTVDEEEYRKIVRQRLDDDFVVDDDGVGYVDNGVDEEDWSSP 88 (1429)
T ss_pred hhhccCchhhHHHHHHHHHhh--ccCcccccccccccccccCHHHHHHHHHHHhcCCeEEeCCCccccccCcchhhccCC
Confidence 456668999999999999999 888999999999999999999999999999999999999999999999985553211
Q ss_pred ---cchhhhhh-hh---hccc---------cCCCCCCc--------------------c-------C-------------
Q psy6283 173 ---DVPQKKEK-HD---KRKK---------NKNIQNPN--------------------A-------K------------- 196 (1030)
Q Consensus 173 ---~~~~~~~~-~~---~~~~---------~~~~~~~~--------------------~-------~------------- 196 (1030)
|....++| +| +.|+ ..+|+++| | +
T Consensus 89 s~ed~~nek~k~gk~~kk~Kr~~k~~~~t~~~~~kk~~~~~~aka~~d~k~~~k~d~~~~diLg~~~e~~~e~~~~~~~i 168 (1429)
T KOG0970|consen 89 SDEDTGNEKKKGGKKPKKDKRKEKDHPVTQMLSTKKSNSALVAKATADQKKSVKIDNFMADILGSIDEEEAEEPEKLKKI 168 (1429)
T ss_pred CccccccccccccccccchhhhhccccccccccccccchhhhhhhhccccccccchhhHHHHhhhccccccccccccccc
Confidence 21222211 11 1111 13344444 0 0
Q ss_pred ------------------C---------------------------------------C---------------------
Q psy6283 197 ------------------D---------------------------------------D--------------------- 198 (1030)
Q Consensus 197 ------------------~---------------------------------------~--------------------- 198 (1030)
| |
T Consensus 169 ~~~~~s~~~rk~~~~a~n~~~~~~~~~~~~kki~~~~s~~ke~~s~Pvp~~~~~~~~~d~~~~~~e~e~~~~ate~e~~e 248 (1429)
T KOG0970|consen 169 RPATPSSPKRKFDSAAKNDSLVPVAIAKKKKKIAEDSSSDKERESSPVPTKRADFYIPDVQPEADEVENPVKATEFEDTE 248 (1429)
T ss_pred cCCCCccccccccccccCCccCcccccccccccCCCCCcCCCCCCCCCCchhhhccCCCcccccccccCccccccccccc
Confidence 0 0
Q ss_pred ------------------------------------------C--CC--------------------------cccccC-
Q psy6283 199 ------------------------------------------S--LP--------------------------LATDHE- 207 (1030)
Q Consensus 199 ------------------------------------------~--~~--------------------------~~~~~~- 207 (1030)
+ +| ++...+
T Consensus 249 ~~~pl~~ee~~~dieet~~~~~~~~eeV~~~~~a~~~~~s~~s~~s~~~~~~di~~~~~~~~~~~~~~~s~~~~~~~~D~ 328 (1429)
T KOG0970|consen 249 LENPLADEEDIEDIEETIAMKKLSMEEVTDTARANKDTISKLSPGSPPGEPEDIKGLGPSNSLQVDTDSSSGVLVKPEDV 328 (1429)
T ss_pred cccccccccccccHHHHHHhhhHHHHHHhhhhhccccchhhcCCCCCCcChhhhhccCcccchhhccchhhccccccccc
Confidence 0 00 222223
Q ss_pred CCceEEEEEEeccccccCCCCEEEEEeeeeecCCCceeEEEEEEcceeeeEEEecCCCCCC--CC---CcccHHHHHHHH
Q psy6283 208 NKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK--TK---EPVSIAQVYSEF 282 (1030)
Q Consensus 208 ~~~~l~fy~~d~~e~~~~~~g~~~lfGkv~~~~~~~~~Sccv~v~~~~R~~~~lpr~~~~~--~~---~~~~~~~v~~e~ 282 (1030)
.+++|+|||||||||+++.||+|||||||++ ++.+|+||||+|+||+|+||||||+..++ ++ .++++.|||+||
T Consensus 329 e~~~l~f~wlDaYee~~~~~g~l~LFGKVk~-~~~t~~Sccv~V~ni~R~lyflPR~~~l~~~~~e~~~~~s~~dv~~E~ 407 (1429)
T KOG0970|consen 329 EDGSLRFFWLDAYEEVYKAPGTLYLFGKVKL-SGDTYVSCCVVVKNICRVLYFLPRPIKLSAAVGEDSIPESKRDVYKEV 407 (1429)
T ss_pred ccceEEEEEehhhHHHhCCCceEEEEeeeec-cCCCceEEEEEEcCeeeEEEecccccccccccCCccchhhHHHHHHHH
Confidence 6899999999999999999999999999998 68899999999999999999999986652 32 567999999999
Q ss_pred HH-HHHhcCCcceEEeeeeeccccCCCCCCCCccEEEEEeccCCCCCCCCCcCCceeeecccCchhhhhHHhhhhccCCe
Q psy6283 283 DQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361 (1030)
Q Consensus 283 ~~-~~~~~~i~~~~~k~v~~~yaf~~~~vp~~~~~lkv~y~~~~p~~~~~~~g~tfs~vfG~~~~~~E~f~l~~~i~Gp~ 361 (1030)
.+ ++++++++.|++|||+++|||+.|+||..++||||.||+.+|.||+|++|.|||||||+||++||+|||.|+|||||
T Consensus 408 ~~~l~~k~~~~~fk~k~v~~~yafe~~dvp~~~dyLeV~y~~~~p~LP~Dlkgdsfshvfgt~tn~lE~fll~rKimGPC 487 (1429)
T KOG0970|consen 408 GSLLSNKLGLTEFKSKPVKKNYAFELPDVPMKSDYLEVLYSYETPKLPSDLKGDSFSHVFGTNTNPLERFLLSRKIMGPC 487 (1429)
T ss_pred HHHHHhhhhhhHhhhhhhhhhhccccCCCCCCCcceEEeccccCCCCccccccchHHHHhccCccHHHHHHHhccccCce
Confidence 98 67789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCccCCCCcCccccceEeecchhhhc------------------------c---cCe-------------------
Q psy6283 362 WLEFPEAEKFPSRISWCKYEVQCNQMEKIR------------------------S---KQG------------------- 395 (1030)
Q Consensus 362 wl~i~~~~~~~~~~s~ck~e~~~~~~~~l~------------------------~---~~~------------------- 395 (1030)
||+|.+++....++|||++||.+.+|+.|. + +|.
T Consensus 488 Wlkv~~~s~~~~~~SwCk~Ev~v~sP~nI~~~~~~~a~~Ppl~llsL~i~T~~N~k~~~~Eiv~is~l~~~~~~id~p~p 567 (1429)
T KOG0970|consen 488 WLKVKGYSDPPRNASWCKVEVTVKSPQNITVVCSKKAPPPPLTLLSLNIRTSMNPKQNKNEIVMISMLCFHNFSIDKPAP 567 (1429)
T ss_pred EEEeecCCCCCCCccceeeEEEecCCcceEEeecCCCCCCCeeEEEeeeeehhccccchhhhhhhhhhhcccccccCCCC
Confidence 999999997779999999999999987110 0 000
Q ss_pred ---------------------------------------------------------EEE--------------------
Q psy6283 396 ---------------------------------------------------------LIY-------------------- 398 (1030)
Q Consensus 396 ---------------------------------------------------------viv-------------------- 398 (1030)
+||
T Consensus 568 ~~~~~~~~c~l~rP~~~~fP~g~~ela~~k~~~v~~~~sErALLs~fla~~~~~dpD~iVgHn~~~~~l~VLl~R~~~~K 647 (1429)
T KOG0970|consen 568 APAFPRHFCVLTRPPGTSFPLGLKELAKQKLSKVVLHNSERALLSHFLAMLNKEDPDVIVGHNIQGFYLDVLLSRLHALK 647 (1429)
T ss_pred CCcccCcceeEecCCCCcCCchHHHHHHhccCceEEecCHHHHHHHHHHHhhccCCCEEEEeccccchHHHHHHHHHHhc
Confidence 222
Q ss_pred -----Ecc------------------------------------------------------------------------
Q psy6283 399 -----LIG------------------------------------------------------------------------ 401 (1030)
Q Consensus 399 -----r~G------------------------------------------------------------------------ 401 (1030)
+||
T Consensus 648 ip~WS~IgRLrrS~~~kfg~~s~~~e~~~~aGRl~CD~~~~a~~lik~~S~~LseL~q~~l~~eR~~i~~~~i~~~y~~s 727 (1429)
T KOG0970|consen 648 IPNWSSIGRLRRSWPPKFGRSSSFGEFFIIAGRLMCDLNLAARELIKAQSYSLSELSQQILKEERKEINANEIPKMYEDS 727 (1429)
T ss_pred CcchhhhhhhhhccccccCCcccccccccccceEEeehHHHHHhhhccccccHHHHHHHHHhhhcccCCHhHhhhhccCh
Confidence 111
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCC
Q psy6283 402 --IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEG 479 (1030)
Q Consensus 402 --l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~ 479 (1030)
|..++.+|+.|+.++++||+++|+|||++|||||+||.|++||+|||++||||+|||+||++|||+||+....+.+.+
T Consensus 728 ~~L~~ll~~~~~d~~~~l~i~~~l~~LpLs~qlTnIaGni~~RTL~G~RAeRnEylLLH~F~~~~fIvPDK~~ssk~~~d 807 (1429)
T KOG0970|consen 728 KSLTYLLEHTITDAELILQIMFRLNALPLSKQLTNIAGNIWARTLQGGRAERNEYLLLHEFYKNGFIVPDKQNSSKAQKD 807 (1429)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhhccchhhhhHHHHHHHHHCCccCCCccchhhhhhh
Confidence 788999999999999999999999999999999999999999999999999999999999999999999855443332
Q ss_pred ccc-ccc--ccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCCCc
Q psy6283 480 EET-GEA--NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEH 556 (1030)
Q Consensus 480 ~d~-~~~--~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p~~ 556 (1030)
.+. .++ ....++++++|+||+||+|+.|||+++|++||||||||||||+||||||||.+...|.+++ |.+|.+
T Consensus 808 ~d~~~eg~d~~~~~KKk~kYaGGLVlePkkGlYe~~VLllDFNSLYPSIIQEyNICFTTv~~~~~d~Dql----p~lP~s 883 (1429)
T KOG0970|consen 808 ADETEEGADEPSKGKKKAKYAGGLVLEPKKGLYEKYVLLLDFNSLYPSIIQEYNICFTTVDRFSVDSDQL----PRLPSS 883 (1429)
T ss_pred hhhhhccccccccccccccccCceeeccccchhhheeEEEEccccchHHHHHhhheeeeccccccCcccC----CCCCCc
Confidence 222 111 1234566799999999999999999999999999999999999999999999854466677 899999
Q ss_pred cccCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHH
Q psy6283 557 QVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636 (1030)
Q Consensus 557 ~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL 636 (1030)
...+||||.+|+.||++|++||++||+. .+|+++.||||||+|||||||||||||||.+||||+.|+|++||.+||+||
T Consensus 884 ~~~~GiLPr~l~~LVerRk~VK~lMK~~-~tp~~~~q~DIRQqALKLTANSMYGCLGf~~SRFyAkpLAaLVT~KGReiL 962 (1429)
T KOG0970|consen 884 SSEQGILPRLLENLVERRKEVKKLMKQE-LTPEKRKQLDIRQQALKLTANSMYGCLGFVNSRFYAKPLAALVTYKGREIL 962 (1429)
T ss_pred cccCCccHHHHHHHHHHHHHHHHHHhcC-CCHHHHHhhhHHHHHHhhhhccchhhcccccchhhhhhHHHHHhhhhHHHH
Confidence 9999999999999999999999999995 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhcccceeEEeecchhhhhhhcccccceEEeeeecC
Q psy6283 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS 716 (1030)
Q Consensus 637 ~~tkelve~~g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~~leLe~E~vf~~llll~KKrYa~l~~~~~~ 716 (1030)
++|+++|++||++|||||||||||+++..|+++|++||++|++.||++|+.|+||+||||++|||++||+|||+.+.+++
T Consensus 963 m~Tk~Lve~mnl~VIYGDTDSvMInTn~td~~~a~kig~~~k~~VNkrYk~LEIDiDgVfkrlLLlkKKKYAAL~l~~dg 1042 (1429)
T KOG0970|consen 963 MNTKDLVEKMNLEVIYGDTDSVMINTNSTDYEEALKIGNEFKQAVNKRYKLLEIDIDGVFKRLLLLKKKKYAALTLNKDG 1042 (1429)
T ss_pred HHHHHHHHhcCeEEEEcCCceEEeeCCCccHHHHHHHHHHHHHHHHHHhhhheeehhHHHHHHHHHhhhhheeEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhcc
Q psy6283 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796 (1030)
Q Consensus 717 dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~L 796 (1030)
+| ++.+++|||||||||||+|+++++..||+.||++. ++++++++||++|.++..+|.+|.||++.|+|+++|
T Consensus 1043 kg--~~~~E~KGLDmvRRDwc~Lake~g~~vLd~ILs~~-----~~ee~veaI~d~L~kI~~k~~~G~vpl~~fvI~k~L 1115 (1429)
T KOG0970|consen 1043 KG--VERIEVKGLDMVRRDWCQLAKEIGKAVLDKILSDK-----SREEIVEAIHDELRKISEKLENGNVPLEKFVITKTL 1115 (1429)
T ss_pred CC--ceeeeecccchhHHHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHHHhcCccchhheeeehhc
Confidence 65 56889999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred cCCCCC----CcchHHHHHHHHHHcCCccchhh
Q psy6283 797 TKAPEG----GKVCITQIRLSRNRRGRRRRRRK 825 (1030)
Q Consensus 797 sK~p~~----~~~pHV~vA~r~~~~g~~~~Kk~ 825 (1030)
||+|++ +++|||+||+||+++|+++.+..
T Consensus 1116 tK~Pe~Yp~~kslPhVqVALrm~~~G~~~~k~g 1148 (1429)
T KOG0970|consen 1116 TKNPEAYPDGKSLPHVQVALRMNKRGKRKVKAG 1148 (1429)
T ss_pred cCChhhCCCcccCcHHHHHHHHHHhcCcccccC
Confidence 999998 88999999999999998777653
No 2
>TIGR00592 pol2 DNA polymerase (pol2). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-131 Score=1253.68 Aligned_cols=595 Identities=52% Similarity=0.876 Sum_probs=529.0
Q ss_pred CceEEEEEEeccccccCCCCEEEEEeeeeecCCCceeEEEEEEcceeeeEEEecCCCCC------CCCCcccHHHHHHHH
Q psy6283 209 KKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEF 282 (1030)
Q Consensus 209 ~~~l~fy~~d~~e~~~~~~g~~~lfGkv~~~~~~~~~Sccv~v~~~~R~~~~lpr~~~~------~~~~~~~~~~v~~e~ 282 (1030)
.+.+.||| |||+|+.+.+|++|||||. ..++|||+.|.|++|++|+||++... .+...+++++++.|+
T Consensus 305 ~~~~~~~~-da~~dr~~~~G~~~lfGr~-----~~~~s~~~~v~g~~R~~~~l~~~Grv~~D~~~~~~~~~~l~~y~le~ 378 (1172)
T TIGR00592 305 RQVFQFYW-DAYEDPAEKLGVVLLFGRD-----VDHVSPCVQVKGINRDLFFLPREGKIDFDLGKVTRRTINLPDYYLEF 378 (1172)
T ss_pred CceEEeeH-HhhhHHhhCCCeEEEeccc-----CCceeEEEEECCeeeeeEEeeccccccccccchhcccccHHHHHHHH
Confidence 34566777 9999988899999999993 23899999999999999999999765 345568999999998
Q ss_pred HH-HHHhcCCcceEEeeeeeccccCCC--CCCCCccEEEEEec-----cCCCCCCCCCcCCceeeecccCchhhhhHHhh
Q psy6283 283 DQ-IATQYKILDFKSRKIEKKYAFNLP--GVPDLSEYLEVRYS-----AKCPALPSDLSGDTFSHVFGTKTSFLENLLLE 354 (1030)
Q Consensus 283 ~~-~~~~~~i~~~~~k~v~~~yaf~~~--~vp~~~~~lkv~y~-----~~~p~~~~~~~g~tfs~vfG~~~~~~E~f~l~ 354 (1030)
.+ ++.+++++.|++|+|.++|||+.+ +||...+|++|.|+ +..|.+|.+++|.||+||||+|++.+|+|++.
T Consensus 379 vs~~~lg~~k~dv~~k~I~~~~~~~~~~~~v~y~~~~lkv~y~l~~~~~~l~~l~~~~~g~~~~~vf~~n~g~~erfll~ 458 (1172)
T TIGR00592 379 VSELALGYKKEKFRAKPIAKKYEFEAPDIDAPYSSEYLEVTYELGKEFAPMEALPSDLKGQTFWHVFGSNTGNLERFLLL 458 (1172)
T ss_pred HHHHHhhcCcCceeeEEehhhccCCCCccCCcCCcceEEEEEccCccchhhhhhhhhccCCcchheeccCHHHHHHHHhc
Confidence 77 788999999999999999999998 89999999999999 78889999999999999999999999999999
Q ss_pred hhccCCeEEEecCccCCCCc-CccccceEeecchhh----------------hc-----c-----cC-------------
Q psy6283 355 RKIKGPSWLEFPEAEKFPSR-ISWCKYEVQCNQMEK----------------IR-----S-----KQ------------- 394 (1030)
Q Consensus 355 ~~i~Gp~wl~i~~~~~~~~~-~s~ck~e~~~~~~~~----------------l~-----~-----~~------------- 394 (1030)
++|+|||||.+.++.....+ .|||++|+.+..+.. ++ + .|
T Consensus 459 rki~gp~WL~i~~p~~~~~~~~S~c~yEga~v~~p~v~~g~~~~~pPl~vLdFsi~SlyPsi~~~~nl~iS~~v~~~~~~ 538 (1172)
T TIGR00592 459 RKIKGPCWLAVKGPDELEYPRRSWCKYEGGYVKPPNVEKGLDKTPPPLVVLDFSMKSLNPSIIRNEIVSIPDTLHREFAL 538 (1172)
T ss_pred CCCCCCceEEeCCCcccCcCCccccceEEEEecCccccccccCCCCCeEEEEeeeEEecCccccCceEEEEEEEeecccc
Confidence 99999999999999887644 899999887754430 00 0 00
Q ss_pred ---------e----EEE---------------------------------------------------------------
Q psy6283 395 ---------G----LIY--------------------------------------------------------------- 398 (1030)
Q Consensus 395 ---------~----viv--------------------------------------------------------------- 398 (1030)
+ +++
T Consensus 539 d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~~~sEr~lL~~fl~~~~~~DPDii~g~n~~qfdlkvl~n 618 (1172)
T TIGR00592 539 DKPPPEPPYDVHPCVGTRPKDCSFPLDLKGEFPGKKPSLVEDLATERALIKKFMAKVKKIDPDEIVGHDYQQRALKVLAN 618 (1172)
T ss_pred cCCCCCCccceEEEEEEccCCCCCCchhhhhhhccCCcEEEEecCHHHHHHHHHHHHHhcCCCEEEEEcccCccHHHHHH
Confidence 0 000
Q ss_pred -----------Ecc------------------------------------------------------------------
Q psy6283 399 -----------LIG------------------------------------------------------------------ 401 (1030)
Q Consensus 399 -----------r~G------------------------------------------------------------------ 401 (1030)
++|
T Consensus 619 R~~~l~i~~~~~~Gr~~~~~~~~~~~~~~~~Grl~~D~~~~~k~~~~~~sy~L~~v~~~~L~~~k~~~~~~~i~~~~~~~ 698 (1172)
T TIGR00592 619 RINDLKIPTWSKIGRLRRSPKFGRRFGERTCGRMICDVEISAKELIRCKSYDLSELVQQILKTERKVIPIDNINNMYSES 698 (1172)
T ss_pred HHHHcCCCcccccCccccCCCccccccceECCEEEEEHHHHHHHHhCcCCCCHHHHHHHHhCCCCcccCHHHHHHHHhCc
Confidence 000
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcC--
Q psy6283 402 --IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK-- 477 (1030)
Q Consensus 402 --l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~-- 477 (1030)
+..++.||++||.++++|+.++++||++.+||+++|++|+++++|||++|||++|||+||++|||+|++....+.+
T Consensus 699 ~~~~~~~~y~~~Da~l~~~L~~~l~~l~l~~~lt~i~G~~~~~~l~~~~~~r~e~lll~~~~~~~~i~P~~~~~~~~~~~ 778 (1172)
T TIGR00592 699 SSLTYLLEHTWKDAMFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKQQKL 778 (1172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCcHHhccCCchHHHHHHHHHHHHHhCCEEccCcccccccccc
Confidence 3568899999999999999999999999999999999999999999999999999999999999999987543211
Q ss_pred CCccccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCCCcc
Q psy6283 478 EGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQ 557 (1030)
Q Consensus 478 ~~~d~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p~~~ 557 (1030)
.+.+.. .+.....++.+|+||+|++|++|||++||++|||||||||||++||||||||++.. +.+++ |.+|.+.
T Consensus 779 ~~~~~~-~~~~~~~~~~~y~Gg~V~eP~~G~y~~~V~~lDF~SLYPSIi~~~Nic~~t~~~~~-~~~~~----~~~~~~~ 852 (1172)
T TIGR00592 779 GDEDEE-IDGYKKGKKAAYAGGLVLEPKVGLYDKYVLLMDFNSLYPSIIQEFNICFTTVQQKV-DEDEL----PELPDSE 852 (1172)
T ss_pred cccccc-ccccccccccCcCCCeEecCCCCcccCCEEEEEcCCccHHHHHHhCcCccccCCCC-cchhc----ccCCccc
Confidence 111110 01111224578999999999999999999999999999999999999999998754 33445 6777778
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHH
Q psy6283 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637 (1030)
Q Consensus 558 ~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~ 637 (1030)
.+.||||.+|+.|++.|+++|++|++ +.+|.++.+||++|+|||++|||||||||+++|||||.++|++||++||++|+
T Consensus 853 ~~~Gilp~il~~L~~~R~~~K~~mk~-~~~~~~~~~~d~~Q~AlKi~aNS~YG~lG~~~~r~~~~~~A~~iT~~GR~~l~ 931 (1172)
T TIGR00592 853 LEMGILPRELRKLVERRKEVKKLMKQ-DLNPDLRLQYDIRQKALKLTANSMYGCLGYSKSRFYAKPLAALVTAKGREILE 931 (1172)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHhhhccccccccccccccChHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhcccceeEEeecchhhhhhhcccccceEEeeeecCC
Q psy6283 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSN 717 (1030)
Q Consensus 638 ~tkelve~~g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~~leLe~E~vf~~llll~KKrYa~l~~~~~~d 717 (1030)
.|+++++++|++|||||||||||+++..+.++++++|.+|++.||+.|++|+|++|++|.++||++||||||+.++...+
T Consensus 932 ~~~~~~e~~g~~VIYGDTDSv~v~~~~~~~~e~~~~~~~~~~~in~~~~~l~le~e~vy~~~ll~~KKrYa~l~~~~~~~ 1011 (1172)
T TIGR00592 932 HTRQLVEEMNLEVIYGDTDSIMINTPGTKYEEVFKIGKEFKSEVNKLYKLLELDIDGVFKRLLLLKKKKYAAIKVEGDSD 1011 (1172)
T ss_pred HHHHHHHHcCCEEEEecCCeEEEEcCCCCHHHHHHHHHHHHHHHhhcCCceEEeehhhhHhhHhhhccceEEEeeccCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876667
Q ss_pred CceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhccc
Q psy6283 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLT 797 (1030)
Q Consensus 718 G~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~Ls 797 (1030)
|...+++++||+++||||||+|+|+++..||+.||+++ +.+++++.|+++|.++..+|.+|.+|+++|+|+++|+
T Consensus 1012 g~~~~k~~~KGle~vRrD~~~l~k~~~~~vl~~il~~~-----~~~~~~~~i~~~l~~~~~~l~~g~~~~~~lvi~k~l~ 1086 (1172)
T TIGR00592 1012 GNYTTKQEVKGLDIVRRDWSPLAKETGKKVLDTILSDK-----DVEEAVEEVQEVLEKIGKNVLNGEVPLEKFVINKQLT 1086 (1172)
T ss_pred CCcceeEEeecceEEECCcHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHHHhcCCCCHHHeeehhhcc
Confidence 87777899999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred CCCCC----CcchHHHHHHHHHHcCCcc
Q psy6283 798 KAPEG----GKVCITQIRLSRNRRGRRR 821 (1030)
Q Consensus 798 K~p~~----~~~pHV~vA~r~~~~g~~~ 821 (1030)
|+|++ +++|||+||+||++++|..
T Consensus 1087 k~~~~Y~~~~~~phv~~A~~~~~~~g~~ 1114 (1172)
T TIGR00592 1087 RDPKDYPDGASLPHVHVALRINARGGRK 1114 (1172)
T ss_pred CCHHHcCCCCCChHHHHHHHHHHhcCCC
Confidence 99877 6799999999999986544
No 3
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional
Probab=100.00 E-value=4.3e-85 Score=819.07 Aligned_cols=388 Identities=29% Similarity=0.455 Sum_probs=346.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCcc
Q psy6283 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEE 481 (1030)
Q Consensus 402 l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d 481 (1030)
+..++.||++||.|+++|+.++++++.+.++|+++|+++..++..|++.+++++|+|+++..||++|++....
T Consensus 461 ~~~l~~Y~l~Da~L~~~L~~kl~~~~~~~e~arv~gip~~~v~~rG~q~kv~s~Llr~~~~~~~viP~~~~~~------- 533 (1054)
T PTZ00166 461 RRRIAVYCLKDAILPLRLLDKLLLIYNYVEMARVTGTPIGWLLTRGQQIKVTSQLLRKCKKLNYVIPTVKYSG------- 533 (1054)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCChHHhhcCCcchhHHHHHHHHHHhcCeeccCchhcc-------
Confidence 4579999999999999999999999999999999999999999999999999999999999999999875310
Q ss_pred ccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCC----CccccccccCC---CC
Q psy6283 482 TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML----QDSDITTLCEY---LP 554 (1030)
Q Consensus 482 ~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~----d~~~i~~~~p~---~p 554 (1030)
.....+|+||+|++|++|||++||++|||+|||||||++|||||||+++..+ .++.+ ...|. |.
T Consensus 534 --------~~~~~~yeGg~VleP~~G~y~~pV~vLDF~SLYPSIiia~NlcysTl~~~~~~~~~~~~~~-~~~p~g~~Fv 604 (1054)
T PTZ00166 534 --------GGSEEKYEGATVLEPKKGFYDEPIATLDFASLYPSIMIAHNLCYSTLVPPNDANNYPEDTY-VTTPTGDKFV 604 (1054)
T ss_pred --------ccccCCCCCceeecCCCCCeeCceEEeecCCcccHHHHhcCCCcceeecchhhccCCCcce-eecCCCceee
Confidence 1234689999999999999999999999999999999999999999987642 01111 01121 44
Q ss_pred CccccCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCC-CCCCCHHHHHHHHHHhH
Q psy6283 555 EHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPN-SRFFAQPLAALVTAKGR 633 (1030)
Q Consensus 555 ~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~-srfy~~~lA~~IT~~GR 633 (1030)
.++.++||||.+|+.|++.|+++|+.|++. .||.++.+||.+|+|||++|||+|||+|+++ +||||.++|++||++||
T Consensus 605 ~~~~r~Gilp~iL~~Ll~~R~~~K~~mk~~-~d~~~~~~ld~rQ~AlKi~aNS~YG~~G~~~~gr~~c~~iA~sIT~~GR 683 (1054)
T PTZ00166 605 KKEVRKGILPLIVEELIAARKKAKKEMKDE-KDPLLKKVLNGRQLALKISANSVYGYTGAQVGGQLPCLEVSTSITSFGR 683 (1054)
T ss_pred ecCCCCcccHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHhhhhhccccccccccccCCccccHHHHHHHHHHHH
Confidence 445689999999999999999999999984 5999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHhhhc---------cceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhccc-ceeEEeecchhhhhhhcc
Q psy6283 634 EILLNTKSLVENL---------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLK 703 (1030)
Q Consensus 634 ~iL~~tkelve~~---------g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~-~~leLe~E~vf~~llll~ 703 (1030)
++|+.|++++++. |++|||||||||||+++..+.++++++|.++++.||+.| ++|+||||+||.++||++
T Consensus 684 ~~i~~t~~~ie~~~~~~~g~~~g~~VIYGDTDSvfV~~~~~~~~ea~~~g~e~a~~Is~~~~~pi~LefEkvy~~~ll~~ 763 (1054)
T PTZ00166 684 QMIDKTKELVEKHYTKANGYKHDATVIYGDTDSVMVKFGTDDIQEAMDLGKEAAERISKKFLKPIKLEFEKVYCPYLLMN 763 (1054)
T ss_pred HHHHHHHHHHHHhccccccCcCCeEEEecCCCceEEEeCCccHHHHHHHHHHHHHHHHHhcCCCcEEEEeeeeeeeeecc
Confidence 9999999999986 999999999999999998899999999999999999987 589999999999999999
Q ss_pred cccceEEeeeecCCCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCC
Q psy6283 704 KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNG 783 (1030)
Q Consensus 704 KKrYa~l~~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g 783 (1030)
||||||+.+++. ++ .+++++||+++||||||+|++++++.+|+.||.++ +.+. +.+++.+.+.+|++|
T Consensus 764 KKrYag~~~~~~-~~--~~k~d~KGie~vRRD~c~~~k~~~~~vl~~il~~~-----d~~~----a~~~~~~~~~~l~~~ 831 (1054)
T PTZ00166 764 KKRYAGLLYTNP-EK--YDKIDCKGIETVRRDNCLLVQQMVETVLNKILIEK-----DVES----AIEFTKGKISDLLQN 831 (1054)
T ss_pred cceEEEEEEecC-CC--CceeeeeeeEEEeccchHHHHHHHHHHHHHHHccC-----CHHH----HHHHHHHHHHHHHcC
Confidence 999999988753 21 24679999999999999999999999999999987 6554 455666777889999
Q ss_pred CcChhhhHHhhcccCCCCCCcchHHHHHHHHHHcC
Q psy6283 784 FVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRG 818 (1030)
Q Consensus 784 ~vpl~~lvItk~LsK~p~~~~~pHV~vA~r~~~~g 818 (1030)
++|+++|+|+|+|+|.-+...+|||+||+||++++
T Consensus 832 ~v~i~~lvi~k~l~k~~Y~~~~phv~~A~rl~~rd 866 (1054)
T PTZ00166 832 RIDISLLVITKSLGKDDYEGRLAHVELAKKLRQRD 866 (1054)
T ss_pred CCCHHHEEEEEEechhhCCCCCcHHHHHHHHHHhC
Confidence 99999999999999955557799999999999873
No 4
>KOG0969|consensus
Probab=100.00 E-value=1.4e-81 Score=722.19 Aligned_cols=492 Identities=28% Similarity=0.432 Sum_probs=419.3
Q ss_pred cHHHHHHHHHH-HHHhcCCcceEEeeeeeccccCCCCCCCCccEEEE---EeccCCCCCCCCCcCCce-eeecccCchhh
Q psy6283 274 SIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEV---RYSAKCPALPSDLSGDTF-SHVFGTKTSFL 348 (1030)
Q Consensus 274 ~~~~v~~e~~~-~~~~~~i~~~~~k~v~~~yaf~~~~vp~~~~~lkv---~y~~~~p~~~~~~~g~tf-s~vfG~~~~~~ 348 (1030)
.+..+..|+++ +...|+|.+| +.|-+-.-+.-|+| -|.++...+-+.++-.|| |+.||+.++-
T Consensus 344 ~W~~firevDPDvI~GYNi~nF-----------DiPYll~RA~~L~Ie~Fp~LGRikn~~s~irDttfSSkq~GtRetK- 411 (1066)
T KOG0969|consen 344 SWRKFIREVDPDVIIGYNICNF-----------DIPYLLNRAKTLGIENFPYLGRIKNSRSVIRDSTFSSKQYGTRETK- 411 (1066)
T ss_pred HHHHHHHhcCCCeEeccccccc-----------ccceecChHhhcCcccccccceecccceeeeccccchhhcCcccce-
Confidence 45667777776 6778888876 33333333444544 344555555667788999 5899999998
Q ss_pred hhHHhhhhccCCeEEEec----------CccCCCCcCccc---cceEeecchhhhcccCeEEEEccHHHHHHHHHHHHHH
Q psy6283 349 ENLLLERKIKGPSWLEFP----------EAEKFPSRISWC---KYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSY 415 (1030)
Q Consensus 349 E~f~l~~~i~Gp~wl~i~----------~~~~~~~~~s~c---k~e~~~~~~~~l~~~~~vivr~Gl~~lv~Y~~~Da~l 415 (1030)
..+|.|.-.+++. ++++|+.+..+. |-+|..+.+.+|+++|.- -..+|+.||++||+|
T Consensus 412 -----~v~I~GRlqfDllqvi~Rd~KLrSytLNaVs~hFL~EQKEDV~~siItdLQng~~~----TRRRlA~YCLkDAYL 482 (1066)
T KOG0969|consen 412 -----EVNIDGRLQFDLLQVILRDYKLRSYTLNAVSAHFLGEQKEDVHHSIITDLQNGNEQ----TRRRLAVYCLKDAYL 482 (1066)
T ss_pred -----EEeecceeeehHHHHHHHhhhhhhcchhhhHHHhhhhhcccccccchhhhhcCcHH----HHHHHHHHHhhhhcc
Confidence 6889999888773 444444443333 447777766677665420 178999999999999
Q ss_pred HHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCccccccccCCCCCCcc
Q psy6283 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAA 495 (1030)
Q Consensus 416 ~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d~~~~~~~~~~~~~~ 495 (1030)
.++|+.+|.+|-.+.+|++++|+|++..|+.|++.++-++||+.+...++++|+-... +.....
T Consensus 483 PlRLlekLM~ivNy~EMARVTGVP~syLltRGqqIKVlSqLlRkakq~~~~~P~i~~~----------------~s~~e~ 546 (1066)
T KOG0969|consen 483 PLRLLEKLMVIVNYTEMARVTGVPISYLLTRGQQIKVLSQLLRKAKQKDFVIPNIKSQ----------------GSDDEQ 546 (1066)
T ss_pred hHHHHHHHHHHHhHHhhhhhhCCcHHHHHhCCcchHHHHHHHHHHhhcCeeeeeeccc----------------CCcccc
Confidence 9999999999999999999999999999999999999999999999999999986432 112357
Q ss_pred ccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCC-----CccccccccC---CCCCccccCCcchHHH
Q psy6283 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML-----QDSDITTLCE---YLPEHQVDTGILPSEI 567 (1030)
Q Consensus 496 Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~-----d~~~i~~~~p---~~p~~~~~~GIlP~iL 567 (1030)
|+||.|++|..|||+.||+.|||+|||||||++||+||||++.... +++.+ ..| +|.....++|+||.+|
T Consensus 547 yEGatVIEp~kGfY~~PIATLDFaSLYPSIMmahNLCYtTLl~~~t~~~l~~~~~~--~TP~g~yFv~~~~rkGlLP~IL 624 (1066)
T KOG0969|consen 547 YEGATVIEPRKGFYDKPIATLDFASLYPSIMMAHNLCYTTLLTKETVEKLGDEDYT--RTPTGDYFVKTEVRKGLLPEIL 624 (1066)
T ss_pred ccccEEeecccccCCCCceeeehhhhhhHHHHHhhhhheeccccchhhhcCcccee--ECCCCCeeeehhhhccccHHHH
Confidence 9999999999999999999999999999999999999999987653 11121 123 3677788999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhh--
Q psy6283 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-- 645 (1030)
Q Consensus 568 ~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~-- 645 (1030)
.+||..|+.+|+.|+. ++||..++.||.||+|||+.|||.||++|++.+.++|.++..+||++||+||..|+.++|+
T Consensus 625 e~ll~aRKraK~dlk~-ekDp~kr~vldGRQLAlKisANSvYGFTGAtvGkLPCleIS~SVT~yGR~MI~~TK~~Ve~~y 703 (1066)
T KOG0969|consen 625 EDLLTARKRAKADLKK-EKDPFKRAVLDGRQLALKISANSVYGFTGATVGKLPCLEISQSVTAYGRQMIEKTKKLVEEKY 703 (1066)
T ss_pred HHHHHHHHHHHHHHHh-ccCHHHHhhhcchhhheeecccccccccccccCccceeeechhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999 7899999999999999999999999999999999999999999999999999999999996
Q ss_pred -------ccceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhccc-ceeEEeecchhhhhhhcccccceEEeeeecCC
Q psy6283 646 -------LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISKLSN 717 (1030)
Q Consensus 646 -------~g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~-~~leLe~E~vf~~llll~KKrYa~l~~~~~~d 717 (1030)
.++.|||||||||||+++..+.++|+++|.++++.|+..| +||.||||+||.+.||+.||||||+.|.+...
T Consensus 704 ~~~ngy~~da~ViYGDTDSVMv~Fgv~~v~~am~lg~eaa~~vs~~F~~PIkLEFEKvY~PYLLInKKRYAGL~~t~pd~ 783 (1066)
T KOG0969|consen 704 TIKNGYSHDAVVIYGDTDSVMVKFGVSDVEEAMKLGREAAEYVSSKFVKPIKLEFEKVYFPYLLINKKRYAGLLWTNPDV 783 (1066)
T ss_pred hhccCCccccEEEecCCceEEEecCchhHHHHHHHhHHHHHHHHhcCCCCceeEeeeeecceEEeccceeeeeEeccCCc
Confidence 3568999999999999999999999999999999999988 58999999999999999999999999985433
Q ss_pred CceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhccc
Q psy6283 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLT 797 (1030)
Q Consensus 718 G~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~Ls 797 (1030)
..+++.||++.||||+|+|++++...+|+.||.+. +++.+++.+++. +.+|..+.++++.|||+|.|+
T Consensus 784 ---~DkmD~kGietVRRDnc~LV~~v~~~~L~kiLi~r-----dv~gA~~fvk~~----IsDlL~nriDiS~LVItK~Lt 851 (1066)
T KOG0969|consen 784 ---FDKMDCKGIETVRRDNCPLVANVVNTVLRKILIER-----DVEGALAFVKDT----ISDLLCNRIDISLLVITKELT 851 (1066)
T ss_pred ---CccccccccchhccCCchHHHHHHHHHHHHHHhhc-----ChHHHHHHHHHH----HHHHHhcccceeeeeeeehhc
Confidence 24789999999999999999999999999999999 887777776654 567888999999999999999
Q ss_pred CCCCC--CcchHHHHHHHHHHc
Q psy6283 798 KAPEG--GKVCITQIRLSRNRR 817 (1030)
Q Consensus 798 K~p~~--~~~pHV~vA~r~~~~ 817 (1030)
|.-.+ ..++||++|.||+++
T Consensus 852 kagd~Y~~kqaHveLAermrkR 873 (1066)
T KOG0969|consen 852 KAGDDYAAKQAHVELAERMRKR 873 (1066)
T ss_pred ccccchhhhhhhHHHHHHhhhc
Confidence 98666 789999999999887
No 5
>PHA03036 DNA polymerase; Provisional
Probab=100.00 E-value=5.4e-76 Score=716.00 Aligned_cols=398 Identities=23% Similarity=0.328 Sum_probs=345.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCcc
Q psy6283 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEE 481 (1030)
Q Consensus 402 l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d 481 (1030)
..+++.||++||.|+++|+.++.++.-..+++..+.+|..+++..+++.+++.+||+.+.+.|+++|....
T Consensus 454 r~rla~YClkDa~L~l~L~~~l~~~~~v~~~a~~~~lp~~~~i~~~~s~~i~~qllr~~~~~~~i~p~~~~--------- 524 (1004)
T PHA03036 454 ALEMARYCIHDACLCKYLWEYYGIETKIDAGASTYLLPQSMVFEYRASTLIKGPLLKLLLEEKTILVRSET--------- 524 (1004)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhheEeeeeccccccHHHHHHHHCCcccccCCC---------
Confidence 68899999999999999999999988889999999999999999999999999999999999999983211
Q ss_pred ccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCcc---------ccc-----
Q psy6283 482 TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS---------DIT----- 547 (1030)
Q Consensus 482 ~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~---------~i~----- 547 (1030)
....+|+||+|++|++|+|++||++|||+|||||||++|||||+|+++..+..+ .+.
T Consensus 525 ---------~~~~~YeGa~VlEP~~G~Y~~pV~vLDFaSLYPSIIia~NLcyeTlv~~~~~~~~~~~~i~~~~i~~~~p~ 595 (1004)
T PHA03036 525 ---------KNKFPYEGGKVFAPKQKMFDNNVLIFDYNSLYPNVCIFGNLSPETLVGVVVNDNRLEAEINKQELRRKYPY 595 (1004)
T ss_pred ---------CccCCcCceEEecCCCCcccCCEEEEEccccchHHHHHhCCCcCeEeeccccccccccccccccccccCCC
Confidence 123479999999999999998999999999999999999999999986432000 000
Q ss_pred -c----cc-CC---C-----CCccccCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCC
Q psy6283 548 -T----LC-EY---L-----PEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLG 613 (1030)
Q Consensus 548 -~----~~-p~---~-----p~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG 613 (1030)
+ .| |. + .....++||||++|+.|++.|+++|++|++ ..+|.++.+||.+|+|+|++|||+|||+|
T Consensus 596 ~dy~~v~~~~~~~~~v~~~~vf~~~rkGILP~iL~~Ll~~Rk~~Kk~mK~-~~d~~e~~~lD~rQlAlKI~aNS~YG~~G 674 (1004)
T PHA03036 596 PRYIYVHCEPRSPDLVSEIAVFDRRIEGIIPKLLKTFLEERARYKKLLKE-ATSSVEKAIYDSMQYTYKIVANSVYGLMG 674 (1004)
T ss_pred ccceeeeccCCcccccccceeecCCCCcChHHHHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHHHHHHHHHhccccccc
Confidence 0 01 21 1 112458999999999999999999999998 56888899999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhh--------------------------------------ccceeEEecC
Q psy6283 614 FPNSRFFAQPLAALVTAKGREILLNTKSLVEN--------------------------------------LNYEVIYGDT 655 (1030)
Q Consensus 614 ~~~srfy~~~lA~~IT~~GR~iL~~tkelve~--------------------------------------~g~~VIYGDT 655 (1030)
+++|+|||.++|++||++||++|+.|+++++. +|++||||||
T Consensus 675 ~~~~rly~~~iA~sVTa~GR~mI~~tk~~Ve~~~~~~~~~~l~~~p~~~f~~~~r~~~~~~~~~l~~~~~~g~kVIYGDT 754 (1004)
T PHA03036 675 FRNSALYSYASAKSCTAIGRNMIKYLNSVLNGSKLINGKLILANCPINPFFKDDRSIDTNYDTNLPVEYNFTFRSVYGDT 754 (1004)
T ss_pred ccCccccCHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhccccccccccccccccccccccccccCCcEEEEEec
Confidence 99999999999999999999999999876531 6899999999
Q ss_pred cceeeecCCCCHHHHHHHHHHHHHHHhcc--cceeEEeecchhhhhhhcccccceEEeeeecCCCceeeeceeeeeeeee
Q psy6283 656 DSLMISCNVNDYDSVFKIGNQIKSECNKL--YKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVR 733 (1030)
Q Consensus 656 DSI~V~~~~~d~eea~~ig~~i~~~Vn~~--~~~leLe~E~vf~~llll~KKrYa~l~~~~~~dG~~~~~~e~KGle~vR 733 (1030)
|||||+++..+.++++++|.++++.||+. +++++||||+||.++||++||||||+.+++..+|...+++++||+++||
T Consensus 755 DSVFV~~~~~d~eea~~ig~ela~~In~~lf~~pikLEfEKVY~~lLLl~KKRYAGl~~~~~~~~~~~~kid~KGie~VR 834 (1004)
T PHA03036 755 DSVFLEINTKDVDKSIKIAKELERIINEKVLFDNFKIEFEAVYKNLIMQSKKKYTTLKYIASSTDGSVPERVNKGTSETR 834 (1004)
T ss_pred CeeEEEcCCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEehhhHHHHHhhhhhheeeEeeccccCCCCceEEEEECceeEe
Confidence 99999999889999999999999999973 5799999999999999999999999998764323334678999999999
Q ss_pred CChHHHHHHHHHHHHHHH---hccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhcccCCCCCCcchHHHH
Q psy6283 734 RDWSQLASEAGKFVISQI---LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQI 810 (1030)
Q Consensus 734 RD~~~l~k~~~~~vL~~I---L~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~LsK~p~~~~~pHV~v 810 (1030)
||||+|++++++.+++.| |++.+.. +.+.+++.+++.+.++...+++|.+|+++|+|+++|+++..+..+|||+|
T Consensus 835 RD~c~fvK~v~~~vi~~L~~iL~~~d~~--~~~~~i~~Lk~~i~dL~~n~~~~~vple~LviSk~l~~~Yk~~~~ph~~l 912 (1004)
T PHA03036 835 RDVSKFHKYMIKIYKTRLLDMLSEGNMN--SNQVCIDILRSLEKDLIIEFDSRSAPLEMFLLSRTHHCNYKSPDNPNMYL 912 (1004)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccCCch--hHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhhcccccCCCCCCCHHHH
Confidence 999999999999977655 8776111 35678888888888888889999999999999999999977766999999
Q ss_pred HHHHHHcCCc
Q psy6283 811 RLSRNRRGRR 820 (1030)
Q Consensus 811 A~r~~~~g~~ 820 (1030)
|.||+++...
T Consensus 913 a~r~~~r~~~ 922 (1004)
T PHA03036 913 VNEYNKNNPE 922 (1004)
T ss_pred HHHHHhhCCC
Confidence 9999987654
No 6
>cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain. DNA polymerase (Pol) zeta is a member of the eukaryotic B-family of DNA polymerases and distantly related to DNA Pol delta. Pol zeta plays a major role in translesion replication and the production of either spontaneous or induced mutations. Apart from its role in translesion replication, Pol zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen.
Probab=100.00 E-value=1.1e-75 Score=680.18 Aligned_cols=347 Identities=27% Similarity=0.419 Sum_probs=300.9
Q ss_pred chhHHHHHHHHHHHhhcCeeccCCccccCcCCCccccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHH
Q psy6283 447 GRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSII 526 (1030)
Q Consensus 447 gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII 526 (1030)
|++.|+|++||+.+++.||++|+..... .....+.|+||+|++|++|||++||++|||+|||||||
T Consensus 1 g~q~rve~~llr~~~~~g~~~p~~~~~~--------------~~~~~~~~~g~~V~eP~~G~y~~~V~vLDF~SLYPSIi 66 (451)
T cd05534 1 GSQFRVESMLLRLAKPENYILPSPSRQQ--------------VAQQRALECLPLVMEPESGFYSDPVIVLDFQSLYPSIM 66 (451)
T ss_pred CCeEEeHHHHHHHHHHcCEEeecCchhc--------------cccccccccCcEeecCCcCcccCceEEEecccccHHHH
Confidence 5788999999999999999999764210 01124678999999999999999999999999999999
Q ss_pred HHhccccccccccCCC----c----------------------cccccccCC---CCCccccCCcchHHHHHHHHHHHHH
Q psy6283 527 QEYNICFTTIPVRMLQ----D----------------------SDITTLCEY---LPEHQVDTGILPSEIKKLVESRRQV 577 (1030)
Q Consensus 527 ~~~NIc~tTv~~~~~d----~----------------------~~i~~~~p~---~p~~~~~~GIlP~iL~~Ll~~R~~v 577 (1030)
++|||||||+++...+ . +.+. .+|. |...+.+.||||.+|+.|++.|.++
T Consensus 67 ~~~Nic~sT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~Gilp~iL~~Ll~~R~~~ 145 (451)
T cd05534 67 IAYNYCYSTCLGRVEELNGGGKFGFLGVKLYLPPPPLDLLLLKDDVT-ISPNGVMFVKKSVRKGILPKMLEEILDTRIMV 145 (451)
T ss_pred HHhCcCcccccccccccccccccccccccccccccccccccCCCcEE-ECCCcceeecCCCCCCchHHHHHHHHHHHHHH
Confidence 9999999999864210 0 0010 1121 3333458999999999999999999
Q ss_pred HHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCC-CCCCCHHHHHHHHHHhHHHHHHHHHHhhh---ccceeEEe
Q psy6283 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPN-SRFFAQPLAALVTAKGREILLNTKSLVEN---LNYEVIYG 653 (1030)
Q Consensus 578 Kk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~-srfy~~~lA~~IT~~GR~iL~~tkelve~---~g~~VIYG 653 (1030)
|++|++.+.++.++.+||.+|+|+||+|||+|||||+++ +||||.++|++||++||++|+.|++++++ +|++||||
T Consensus 146 K~~mk~~~~~~~~~~~ld~~Q~AlKi~~NS~YGy~G~~~~gr~~~~~iA~~IT~~GR~~l~~~~~~ie~~~~~g~~VIYG 225 (451)
T cd05534 146 KKAMKKYKDDKKLQRILDARQLALKLLANVTYGYTAASFSGRMPCVEIADSIVQTGRETLERAIELIESTPKWGAKVVYG 225 (451)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEee
Confidence 999998666689999999999999999999999999997 59999999999999999999999999998 99999999
Q ss_pred cCcceeeecCCCCHHHHHHHHHHHHHHHhcccc-eeEEeecchhhhhhhcccccceEEeeeecCCCceeeeceeeeeeee
Q psy6283 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK-QLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVV 732 (1030)
Q Consensus 654 DTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~-~leLe~E~vf~~llll~KKrYa~l~~~~~~dG~~~~~~e~KGle~v 732 (1030)
|||||||++++.+.++++++|.+|++.||+.|+ +|+|++|++|.++||++||||||+.+++.+++ .+++++||+++|
T Consensus 226 DTDSvfv~~~~~~~~~~~~~~~~i~~~in~~~~~~i~le~E~vy~~~ll~~KKrYag~~~~~~~~~--~~ki~~KGle~v 303 (451)
T cd05534 226 DTDSLFVLLPGRTKEEAFKIGKEIAEAVTAANPSPIKLKFEKVYHPCVLVTKKRYVGYKYESPDQT--EPTFDAKGIETV 303 (451)
T ss_pred cccceeEecCCCCHHHHHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHhhhhEEEEEEecCCCC--CceEEeecceEE
Confidence 999999999988899999999999999999885 89999999999999999999999988764332 346799999999
Q ss_pred eCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhcccCCCCC---CcchHHH
Q psy6283 733 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG---GKVCITQ 809 (1030)
Q Consensus 733 RRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~LsK~p~~---~~~pHV~ 809 (1030)
|||||+|++++++.+|+.||.++ +.+ .+++++.+.+.+|++|.+|+++|+|+++|++.++. ..+|||+
T Consensus 304 RrD~~~~~k~~~~~vl~~il~~~-----d~~----~~~~~l~~~~~~l~~g~~~~~dlii~k~l~~~~y~~~~~~p~hv~ 374 (451)
T cd05534 304 RRDGCPAVQKILEKSLRILFETK-----DLS----TVKSYLQRQWSKLLQGRVSIQDFIFAKEVRLGTYKEGATLPAGAI 374 (451)
T ss_pred ecccHHHHHHHHHHHHHHHhccC-----CHH----HHHHHHHHHHHHHHcCCCCHHHeEEEEEeeccccCccCCCChHHH
Confidence 99999999999999999999887 644 55667778888999999999999999999998743 4568999
Q ss_pred HHHHHHHcCC
Q psy6283 810 IRLSRNRRGR 819 (1030)
Q Consensus 810 vA~r~~~~g~ 819 (1030)
||+++++++.
T Consensus 375 ~A~k~~~~~~ 384 (451)
T cd05534 375 VALRRMEKDP 384 (451)
T ss_pred HHHHHHHhCC
Confidence 9988887763
No 7
>PRK05761 DNA polymerase I; Reviewed
Probab=100.00 E-value=3.3e-74 Score=704.73 Aligned_cols=395 Identities=24% Similarity=0.330 Sum_probs=333.8
Q ss_pred EccHHHHHHHHHHHHHHHHHHH--HHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCc
Q psy6283 399 LIGIVEFIKFTMLHSSYIIKIM--CELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476 (1030)
Q Consensus 399 r~Gl~~lv~Y~~~Da~l~~~L~--~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~ 476 (1030)
++.+..|+.||++||.+|++|+ .+..+|++..+|++++|.|+.++..++.+.+++++|++++++.||++|++......
T Consensus 313 ~~~~~~l~~Y~l~Da~l~~~L~~f~~~~~l~~~~elarit~lpl~~v~r~~~g~~i~~~l~~~a~~~~~liP~~~~~~~~ 392 (787)
T PRK05761 313 ELDLEELAEYNFRDAEITLKLTFFNNELVLKLILLLSRISKLPIEELSRATISTWISNLEYWEHRKRGWLIPWKEDILRL 392 (787)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCcCHHHHhccCHHHHHHHHHHHHHHhCCEeCCCCcccccc
Confidence 3447899999999999999995 36789999999999999999999878888999999999999999999987641100
Q ss_pred CCCccccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCC--C
Q psy6283 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYL--P 554 (1030)
Q Consensus 477 ~~~~d~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~--p 554 (1030)
.. + ..........+|.||+|++|.+|+|++ |++|||+|||||||++|||||+|+++..++.... ...+.. .
T Consensus 393 ~~--~---~~~~~~~~~~~y~Gg~V~~P~~G~y~~-V~vlDF~SLYPSIi~~~Ni~p~T~~~~~~~~~~~-~~~~~~~~~ 465 (787)
T PRK05761 393 DH--E---VYKKAIIKGKKYRGGLVFQPPPGIFFN-VYVLDFASLYPSIIVKWNLSPETVRIPECKCHYD-DEVPELGHS 465 (787)
T ss_pred cc--c---cccccccccCCcCCcEEeccCCCceee-EEEeeecccchHHHHHhCCChhhccCcccccccc-CCCCCCCce
Confidence 00 0 000112235689999999999999998 9999999999999999999999999776421110 000000 1
Q ss_pred CccccCCcchHHHHHHHHHHHHHHHHhcCCC-CChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhH
Q psy6283 555 EHQVDTGILPSEIKKLVESRRQVKALMKQPN-LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633 (1030)
Q Consensus 555 ~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~-~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR 633 (1030)
....+.||+|.+|..|++.|+++|+.|++.. .+++++.+||.+|+|+||+|||+|||||++++||||+++|++||++||
T Consensus 466 ~~~~~~gl~~~il~~l~~~R~~~k~~~~~~~~~~~~~~~~ld~~Q~AlKi~~NS~YGy~G~~~~r~~~~~~A~~IT~~GR 545 (787)
T PRK05761 466 VCDDRPGLTSVLVGLLRDFRVKIYKKKAKDPNLDEERRAWYDVVQRALKVFLNASYGVFGAENFKLYRIEVAESITALGR 545 (787)
T ss_pred eecCCCCchHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhheeeeecccccccccCCCCCCHHHHHHHHHHHH
Confidence 1235899999999999999999999998743 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhcccceeEEeecchhhhhhhc-ccccceEEee
Q psy6283 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLL-KKKKYAALSI 712 (1030)
Q Consensus 634 ~iL~~tkelve~~g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~~leLe~E~vf~~llll-~KKrYa~l~~ 712 (1030)
++|+.|+++++++|++|||||||||||+.+. .+.+. ++.+.|++.+ +|+||+|++|.+++|. +||||||+.
T Consensus 546 ~~l~~t~~~ie~~g~~VIYGDTDSvfv~~~~--~~~~~----~l~~~i~~~~-~i~LE~Ek~y~~~l~~~~KKrYag~~- 617 (787)
T PRK05761 546 EILLSTKKKAEELGLKVLYGDTDSLFVWGPT--KESLE----ELIKEIEERT-GIDLEVDKTYDWVAFSGLKKNYFGVL- 617 (787)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCceEEEECCC--HHHHH----HHHHHHHHhC-CCceEEEEEEEEEEEecccceEEEEe-
Confidence 9999999999999999999999999999764 23333 4556666666 4999999999999985 999999996
Q ss_pred eecCCCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChh---HHHHHHHHHHHHHHHHhhCCCcChhh
Q psy6283 713 SKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD---DRLQNIHEHMKKIRTDLDNGFVPLTL 789 (1030)
Q Consensus 713 ~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e---~~v~~I~~~l~~~~~~l~~g~vpl~~ 789 (1030)
.+|+ +++||++++|||||+|++++|..+|+.||.++ +++ .++..+++++.+.+.+|++|++|+++
T Consensus 618 ---~dgk----i~~KG~e~vRrD~~~~~k~~~~~vl~~ll~~~-----~~~~~~~~~~~~~~~v~~~~~~l~~g~~~~~~ 685 (787)
T PRK05761 618 ---KDGK----VKIKGIVAKKRNTPEFVKELQREVLEVLKSIR-----SPEDVEKVKDEIEDVLKRYYEKLRAKDYPLDE 685 (787)
T ss_pred ---cCCe----EEEEEEEEEeCCchHHHHHHHHHHHHHHhcCC-----ChhHHHHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 3564 58999999999999999999999999999988 554 45668999999999999999999999
Q ss_pred hHHhhcccCCCCC---CcchHHHHHHHHHHcCCc
Q psy6283 790 LEITKQLTKAPEG---GKVCITQIRLSRNRRGRR 820 (1030)
Q Consensus 790 lvItk~LsK~p~~---~~~pHV~vA~r~~~~g~~ 820 (1030)
|+|+++|+|++++ +++|||+||++|.+.|..
T Consensus 686 lvi~k~l~k~~~~Y~~~~~~hv~aa~~~~~~g~~ 719 (787)
T PRK05761 686 LAIRVRLSKPLDEYTKNTPQHVKAALQLRDYGVE 719 (787)
T ss_pred EEEEeeecCCHHHhcCCCchHHHHHHHHHhCCCC
Confidence 9999999999887 467999999999887743
No 8
>PRK05762 DNA polymerase II; Reviewed
Probab=100.00 E-value=4.2e-74 Score=707.35 Aligned_cols=367 Identities=28% Similarity=0.459 Sum_probs=326.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCc
Q psy6283 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGE 480 (1030)
Q Consensus 401 Gl~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~ 480 (1030)
+...|+.||++||.+|+.|+.+++++|++.++|+++|++|++++ |++.++|++||+++|+.||++|++...
T Consensus 326 ~~~~l~~Y~l~Da~lt~~L~~kl~ll~~~~ela~l~g~~~~~v~--~~~~~~e~lll~~~~~~g~v~P~~~~~------- 396 (786)
T PRK05762 326 DKPALARYNLKDCELVTRIFEKTKLLPFLLERATVTGLPLDRVG--GSVAAFEHLYLPRAHRAGYVAPNLGER------- 396 (786)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcCHHHhC--ccHHhHHHHHHHHHHHCCEeCCCcccc-------
Confidence 36889999999999999999999999999999999999999975 677788999999999999999986421
Q ss_pred cccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCc--cccccccCC-CCCcc
Q psy6283 481 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQD--SDITTLCEY-LPEHQ 557 (1030)
Q Consensus 481 d~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~--~~i~~~~p~-~p~~~ 557 (1030)
....|.||+|++|+||||++ |++|||+|||||||++|||||+|++...+.+ +.+.. |. .-. .
T Consensus 397 -----------~~~~y~Gg~V~~p~~G~y~~-V~~lDF~SLYPSIi~~~Ni~p~T~~~~~~~~~~~~~~~--~~~~~f-~ 461 (786)
T PRK05762 397 -----------PGEASPGGYVMDSKPGLYDS-VLVLDFKSLYPSIIRTFNIDPDGLVEGLAQPPEESVAG--FLGARF-S 461 (786)
T ss_pred -----------cccccCccEEecCCCCCcCc-eEEEEchhhhHHHHHHhCcCccceecCCCCCCcccccC--CCCccc-c
Confidence 23579999999999999997 9999999999999999999999998654311 11110 10 001 1
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHH
Q psy6283 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637 (1030)
Q Consensus 558 ~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~ 637 (1030)
.+.||||.+|+.|++.|+++|+.|++ .+|+|+|++|||+|||||++++||||+++|++||+.||++|+
T Consensus 462 k~~gilp~~l~~l~~~R~~~K~~~~~------------~~q~a~Ki~~Ns~YG~~g~~~~r~~~~~~A~~it~~Gr~~l~ 529 (786)
T PRK05762 462 REKHFLPEIVERLWEGRDEAKREMNK------------PLSQAIKIIMNAFYGVLGSSGCRFFDPRLASSITMRGHEIMK 529 (786)
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhhhhcccccccccccccChHHHHHHHHhHHHHHH
Confidence 27999999999999999999999975 589999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccceeEEecCcceeeecC-CCCHHHHHHHHHHHHHHHhcccc-----------eeEEeecchhhhhhhc---
Q psy6283 638 NTKSLVENLNYEVIYGDTDSLMISCN-VNDYDSVFKIGNQIKSECNKLYK-----------QLELDIDGVYKYMLLL--- 702 (1030)
Q Consensus 638 ~tkelve~~g~~VIYGDTDSI~V~~~-~~d~eea~~ig~~i~~~Vn~~~~-----------~leLe~E~vf~~llll--- 702 (1030)
.|++++++.|++|||||||||||+++ ..+.+++.++|.+|.+.||+.|. +|+||+|++|.+++|+
T Consensus 530 ~~~~~~~~~g~~viYgDTDSifv~~~~~~~~~~~~~~~~~l~~~in~~~~~~l~~~~~~~~~l~le~E~vy~~~~l~~~r 609 (786)
T PRK05762 530 QTRELIEAQGYQVIYGDTDSTFVWLGGAHDEEDAAKIGRALVQEINQWWQEHLQQEFGLESALELEFEKHYRRFFMPTIR 609 (786)
T ss_pred HHHHHHHHCCCEEEeecCCceEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhccCCCceEEEEeeeeehhcccccc
Confidence 99999999999999999999999998 57889999999999999998543 7999999999999995
Q ss_pred -----ccccceEEeeeecCCCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHH
Q psy6283 703 -----KKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 777 (1030)
Q Consensus 703 -----~KKrYa~l~~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~ 777 (1030)
+||||||+.+..+++| ++++||+++||||||+|+|++|.++|+.||.++ +. ++++.++.
T Consensus 610 g~~~~~KKrYag~~~~~~~~~----~~~~KGle~vRrD~~~~~k~~~~~vl~~il~~~-----~~-------~~~~~~~~ 673 (786)
T PRK05762 610 GAEEGSKKRYAGLIQEGDGDG----RIVFKGLETVRTDWTPLAKEFQQELYERIFRGE-----PY-------VDYVREVI 673 (786)
T ss_pred ccchhhhheEEEEEEccCCCc----eEEEEeeEEECCChHHHHHHHHHHHHHHHhcCC-----CH-------HHHHHHHH
Confidence 9999999988544444 468999999999999999999999999999988 43 56777888
Q ss_pred HHhhCCCcChhhhHHhhcccCCCCC---CcchHHHHHHHHHHcCCc
Q psy6283 778 TDLDNGFVPLTLLEITKQLTKAPEG---GKVCITQIRLSRNRRGRR 820 (1030)
Q Consensus 778 ~~l~~g~vpl~~lvItk~LsK~p~~---~~~pHV~vA~r~~~~g~~ 820 (1030)
.+|++|++| ++|+|+++|+|++++ +++|||+||+++++.|..
T Consensus 674 ~~l~~~~~~-~~lv~~k~l~k~~~~Y~~~~~phv~aa~~~~~~~~~ 718 (786)
T PRK05762 674 DKLRAGELD-EKLVYRKRLRRPLDEYQRNVPPHVRAARLADEMGYK 718 (786)
T ss_pred HHHHcCCCc-hhEEEEehcCCCHHHcCCCCCHHHHHHHHHHhcCcc
Confidence 999999999 999999999999988 679999999999998865
No 9
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair]
Probab=100.00 E-value=5.9e-73 Score=696.56 Aligned_cols=385 Identities=34% Similarity=0.552 Sum_probs=348.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCcc
Q psy6283 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEE 481 (1030)
Q Consensus 402 l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d 481 (1030)
...++.||+.|+.++++++.+.++||+..++++++|+++.+++.+|++.+++++|++++++.|+++|++....
T Consensus 329 ~~~~~~~~l~~~~l~~~~~~~~~~l~~~~e~s~vsg~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iP~~~~~~------- 401 (792)
T COG0417 329 KLRLLLYNLSDADLVLRILLKNELLPLLIELSRVSGLPLDDVTRAGSGARVEGLLLREAKRRGELIPNKEERP------- 401 (792)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHcccchhHHHHHHHHHHHhhcCEeccCccccc-------
Confidence 6889999999999999999999999999999999999999999999999999999999999999999876321
Q ss_pred ccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCCCccccCC
Q psy6283 482 TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTG 561 (1030)
Q Consensus 482 ~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p~~~~~~G 561 (1030)
....|.||+|++|.||||+| |++|||+|||||||++|||||+|+++.++...... ....+.....++|
T Consensus 402 ----------~~~~~~Gg~V~~P~~Gly~~-V~vLDF~SLYPSII~~~Ni~p~T~~~~~~~~~~~~-~~~~~~~~~~~~G 469 (792)
T COG0417 402 ----------ERKKYKGGLVLEPEPGLYEN-VLVLDFSSLYPSIIIKYNISPDTLVEEDCSDDYSP-PGVGHGFCKREKG 469 (792)
T ss_pred ----------hhhhcCCCEEccCCccccCc-EEEEEccccChHHHHHhCCCcceecCCCccccccC-CCCcccccccCCC
Confidence 11579999999999999999 99999999999999999999999998765211110 0011333457899
Q ss_pred cchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHH
Q psy6283 562 ILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641 (1030)
Q Consensus 562 IlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tke 641 (1030)
++|.+|..|++.|.++|+.|++ ..++.++.+||.+|+||||+|||+|||+|+++|||||.+||++||++||++|..|++
T Consensus 470 ~lp~il~~L~~~R~~~K~~~k~-~~~~~e~~~~d~rQ~AlKvl~NS~YGy~G~~~~rf~~~e~a~~VT~~gR~ii~~t~~ 548 (792)
T COG0417 470 FLPEILEELLDRRDEIKKKMKK-EKDPSERKLLDGRQLALKVLANSFYGYLGYSNSRFYCIECAESVTAFGREILRETKE 548 (792)
T ss_pred chHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHhhccccccccCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 466779999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhccc-ceeEEeecchhhhhhhcc-cccceEEeeeecCCCc
Q psy6283 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLK-KKKYAALSISKLSNGK 719 (1030)
Q Consensus 642 lve~~g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~-~~leLe~E~vf~~llll~-KKrYa~l~~~~~~dG~ 719 (1030)
+++++|+.|||||||||||.++....+++++++.++.+.||..+ .+|+||+|++|+++||+. ||||||+.+ +|.
T Consensus 549 ~ae~~G~~ViyGDTDSlfv~~~~~~~~ea~~~~~~l~~~vn~~~~~~i~lE~e~~y~~~ll~~~KKRYag~~~----~g~ 624 (792)
T COG0417 549 LAEEMGLRVIYGDTDSLFVTLPGATYEEAIKIGEELVEEVNERLPSGIELEVEKVYKRFLLPTAKKRYAGLLE----DGD 624 (792)
T ss_pred HHHHcCCEEEEECCceeEEEcCCCchHHHHHHHHHHHHHHhhcCCCCeEEEeeehhhhhhccccccceEEEec----cCC
Confidence 99999999999999999999998779999999999999999975 489999999999999999 999999964 342
Q ss_pred eeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhcccCC
Q psy6283 720 MICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKA 799 (1030)
Q Consensus 720 ~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~LsK~ 799 (1030)
.+++||++++|||||+|+|++|.+||+.||.+. +++++. ..++..+...+++|.+|+++|+|+++|++.
T Consensus 625 ---~~~vKG~e~~RrD~~~l~k~~q~~vl~~il~~~-----~~e~~~---~~~~~~v~~~l~~~~~~~~~lvi~k~l~k~ 693 (792)
T COG0417 625 ---KIEVKGLETVRRDWPELVKEFQREVLEVLLSGR-----DVEEAL---AKYVRDVIEKLRNGEVPIEKLVISKRLTRP 693 (792)
T ss_pred ---EEEEeeeEEEecCccHHHHHHHHHHHHHHHcCC-----CHHHHH---HHHHHHHHHHHHcCCcCHHHheeeeeeccC
Confidence 468999999999999999999999999999999 888774 666777888999999999999999999999
Q ss_pred CCC--CcchHHHHHHHHHHcCCcc
Q psy6283 800 PEG--GKVCITQIRLSRNRRGRRR 821 (1030)
Q Consensus 800 p~~--~~~pHV~vA~r~~~~g~~~ 821 (1030)
+.+ +++|||++|++++..|...
T Consensus 694 ~~ey~~~~p~~~~a~~~~~~g~~~ 717 (792)
T COG0417 694 LSEYKANKPHVVVAARLRKRGINV 717 (792)
T ss_pred hhhhcCCCcHHHHHHHHHhCCCCC
Confidence 877 8899999999999985544
No 10
>cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. Presently, no direct data is available regarding the strand specificity of DNA polymerase during DNA replication in vivo. However, mutation analysis supports the hypothesis that DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand.
Probab=100.00 E-value=5.7e-73 Score=648.41 Aligned_cols=310 Identities=33% Similarity=0.504 Sum_probs=276.9
Q ss_pred cccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCC----ccccccccCC---CCCccccCCcchHHH
Q psy6283 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ----DSDITTLCEY---LPEHQVDTGILPSEI 567 (1030)
Q Consensus 495 ~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d----~~~i~~~~p~---~p~~~~~~GIlP~iL 567 (1030)
+|+||+|++|++|||++||++|||+|||||||++|||||+|+++..+. ++++. ..|. |...+.+.||||.+|
T Consensus 2 ~Y~Gg~V~eP~~G~y~~~V~~lDF~SLYPSIi~~~Nic~~T~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~Gilp~iL 80 (393)
T cd05533 2 QYEGATVIEPIKGYYDVPIATLDFASLYPSIMMAHNLCYTTLLNKNTAKKLPPEDYI-KTPNGDYFVKSSVRKGLLPEIL 80 (393)
T ss_pred CCCCeEeccCCCCCccCCeEEecCCCccHHHHHHhCcCccccccCcccccCCCcceE-ECCCCceeecCCCCCCchHHHH
Confidence 699999999999999999999999999999999999999999876530 11110 1121 333356899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhc-
Q psy6283 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL- 646 (1030)
Q Consensus 568 ~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~- 646 (1030)
+.|++.|.++|+.|++ ..||.++.+||.+|+|+||+|||+|||||++++||||.++|++||++||.+|+.|++++++.
T Consensus 81 ~~Ll~~R~~~K~~mk~-~~d~~~~~~ld~~Q~AlKi~~NS~YG~~G~~~~r~~~~~~A~~iT~~GR~~l~~~~~~ie~~~ 159 (393)
T cd05533 81 EELLAARKRAKKDLKE-ETDPFKKAVLDGRQLALKISANSVYGFTGATVGKLPCLEISSSVTSFGRQMIEKTKKLVEEKY 159 (393)
T ss_pred HHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHhhheeeeecccccccccCCccchHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 9999999999999998 56899999999999999999999999999999999999999999999999999999999975
Q ss_pred --------cceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhcccc-eeEEeecchhhhhhhcccccceEEeeeecCC
Q psy6283 647 --------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK-QLELDIDGVYKYMLLLKKKKYAALSISKLSN 717 (1030)
Q Consensus 647 --------g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~-~leLe~E~vf~~llll~KKrYa~l~~~~~~d 717 (1030)
|++|||||||||||+++..+.++++++|.+|++.||+.|+ +|+||+|++|.++|+++||||||+.+++. +
T Consensus 160 ~~~~g~~~~~~VIYGDTDSvfv~~~~~~~~~~~~~~~ei~~~i~~~~~~~i~Le~E~vy~~~ll~~KKrYag~~~~~~-~ 238 (393)
T cd05533 160 TKANGYSHDAKVIYGDTDSVMVKFGVSDVEEAMKLGKEAAEYVSKKFIKPIKLEFEKVYFPYLLINKKRYAGLLWTNP-D 238 (393)
T ss_pred cccccCCCceEEEecCCCceEEEcCCCCHHHHHHHHHHHHHHHHhcCCCCeEEeeHHHHHHHHHHHHhhheEEEeecC-C
Confidence 8899999999999999988999999999999999999985 89999999999999999999999987652 2
Q ss_pred CceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhccc
Q psy6283 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLT 797 (1030)
Q Consensus 718 G~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~Ls 797 (1030)
+ .+++++||++++|||||+|+|+++..+|+.||.++ +.+. +++++.+++.+|.+|++|+++|+|+++|+
T Consensus 239 ~--~~ki~~KGle~vRRD~~~~~k~~~~~vl~~il~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~l~i~k~l~ 307 (393)
T cd05533 239 K--HDKMDTKGIETVRRDNCLLVQNVVETCLNKILIER-----DVEG----AIEFVKGVISDLLQNKIDISLLVITKALT 307 (393)
T ss_pred C--CceeEEeceEEEcccchHHHHHHHHHHHHHHHhcC-----CHHH----HHHHHHHHHHHHHcCCCCHHHEEEEeeec
Confidence 1 24678999999999999999999999999999887 6554 45566677788999999999999999999
Q ss_pred CCCCC--CcchHHHHHHHHHHcC
Q psy6283 798 KAPEG--GKVCITQIRLSRNRRG 818 (1030)
Q Consensus 798 K~p~~--~~~pHV~vA~r~~~~g 818 (1030)
|+|++ ..+|||+||+||+++|
T Consensus 308 k~~~~Y~~~~phv~~A~rl~~~~ 330 (393)
T cd05533 308 KTADDYAGKQAHVELAERMRKRD 330 (393)
T ss_pred CChhhcCCCCchHHHHHHHHhcC
Confidence 99877 6699999999999986
No 11
>cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. In most organisms no specific repair role, other than check point control, has been assigned to this enzyme. Pol alpha contains both polymerase and exonuclease domains, but lacks exonuclease activity suggesting that the exonuclease domain may be for structural purposes only.
Probab=100.00 E-value=2.1e-72 Score=645.38 Aligned_cols=318 Identities=59% Similarity=0.911 Sum_probs=291.1
Q ss_pred CCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCCCccccCCcchHHHHHH
Q psy6283 491 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKL 570 (1030)
Q Consensus 491 ~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p~~~~~~GIlP~iL~~L 570 (1030)
++..+|+||+|++|.+|||++||++|||+|||||||++|||||+|+++..+... ... ...++....+.||||.+|+.|
T Consensus 3 ~~~~~y~Gg~V~eP~~G~y~~~V~~lDF~SLYPSIi~~~Ni~~~Ti~~~~~~~~-~~~-~~~~~~~~~~~Gilp~~l~~l 80 (400)
T cd05532 3 KKKAKYAGGLVLEPKKGLYDKFILLLDFNSLYPSIIQEYNICFTTVDRADPDDE-DDE-EPPLPPSDQEKGILPRIIRKL 80 (400)
T ss_pred CccCCcCCceeecCCCCcccCceEEEeccccchHHHHHhcCChhhccccccccc-CCc-cccccccccCCCchHHHHHHH
Confidence 456789999999999999999999999999999999999999999997654111 100 012444567899999999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhcccee
Q psy6283 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEV 650 (1030)
Q Consensus 571 l~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~g~~V 650 (1030)
++.|.++|++|++ ..|+.++.+||.+|+|+|++|||+|||+|+++|||||.++|++||+.||.+|+.|++++++.|++|
T Consensus 81 ~~~R~~~K~~~k~-~~d~~~~~~~d~~Q~alKi~~NS~YG~~g~~~~r~~~~~~A~~iT~~GR~~l~~~~~~~e~~g~~V 159 (400)
T cd05532 81 VERRRQVKKLMKS-EKDPDKKAQLDIRQLALKLTANSMYGCLGFSYSRFYAKPLAALITSKGREILQKTKDLVEKMNLEV 159 (400)
T ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHhhcccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 9999999999999 458999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcceeeecCCCCHHHHHHHHHHHHHHHhcccceeEEeecchhhhhhhcccccceEEeeeecCCCceeeeceeeeee
Q psy6283 651 IYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVD 730 (1030)
Q Consensus 651 IYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~~leLe~E~vf~~llll~KKrYa~l~~~~~~dG~~~~~~e~KGle 730 (1030)
||||||||||.++..+.+++++++.+|++.||+.|++|+|++|++|.+++|++|||||++.++.++ ...+++++||++
T Consensus 160 iYgDTDSifv~~~~~~~~~~~~~~~~i~~~in~~~~~i~le~e~iy~~~ll~~KKrYag~~~~~~~--~~~~k~~~KGie 237 (400)
T cd05532 160 IYGDTDSIMINTGTTDYEEAKKLGNKIKKEVNKSYKKLEIDIDGVFKRLLLLKKKKYAALKVVDDD--KGKLKKEVKGLD 237 (400)
T ss_pred EEeCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhcceEEEeecCC--ccceeeEEecee
Confidence 999999999999888899999999999999999999999999999999999999999999887543 223467999999
Q ss_pred eeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhcccCCCCC--C--cch
Q psy6283 731 VVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG--G--KVC 806 (1030)
Q Consensus 731 ~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~LsK~p~~--~--~~p 806 (1030)
++|||||+|+++++..+|+.||.++ +.+++++.|++++.+++.+|.+|++|+++|+|+++|+|++++ . ++|
T Consensus 238 ~~RrD~~~~~k~~~~~vl~~ll~~~-----~~~~~~~~i~~~~~~~~~~l~~~~~~~~~lii~k~l~k~~~~Y~~~~~~~ 312 (400)
T cd05532 238 IVRRDWCPLSKEIGNYVLDQILSDK-----SREDIVENIHEYLRKINEDLRNGKIPLEKFIITKQLTKNPEEYPDKKSLP 312 (400)
T ss_pred EEecccHHHHHHHHHHHHHHHHcCC-----ChHHHHHHHHHHHHHHHHHHHcCCCCHHHEEEeecccCChHHcCCCCCCc
Confidence 9999999999999999999999999 888999999999999999999999999999999999999877 2 689
Q ss_pred HHHHHHHHHHcC
Q psy6283 807 ITQIRLSRNRRG 818 (1030)
Q Consensus 807 HV~vA~r~~~~g 818 (1030)
||+||+||.+.|
T Consensus 313 hv~~A~rl~~~g 324 (400)
T cd05532 313 HVQVALRMNKRG 324 (400)
T ss_pred HHHHHHHHHHcC
Confidence 999999999887
No 12
>PHA02528 43 DNA polymerase; Provisional
Probab=100.00 E-value=1.1e-68 Score=657.49 Aligned_cols=379 Identities=21% Similarity=0.290 Sum_probs=303.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCcc
Q psy6283 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEE 481 (1030)
Q Consensus 402 l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d 481 (1030)
...|+.||++||.|+++|+.++++|+++.++|+++|+++.+++ ++...+++++|+.+|+.|||+|++..
T Consensus 303 ~~~l~~Ynl~Da~Lv~~L~~kl~ll~~~~e~ArltGi~l~~v~--sq~~~~~~lll~~~~r~g~viP~~~~--------- 371 (881)
T PHA02528 303 HQKYIEYNIIDVELVDRLDDKRKLIELVLSMAYYAKINFEDVF--SPIKTWDAIIFNSLKEEKIVIPENKS--------- 371 (881)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHhc--chHhHHHHHHHHHHHHcCcccCCccc---------
Confidence 6789999999999999999999999999999999999999995 34555689999999999999997642
Q ss_pred ccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCc---cccccc---------
Q psy6283 482 TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQD---SDITTL--------- 549 (1030)
Q Consensus 482 ~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~---~~i~~~--------- 549 (1030)
....+|.||+|++|+||||+ +|++|||+|||||||++|||||+|+++..+.. ..+...
T Consensus 372 ---------~~~~~y~Gg~V~eP~pGlY~-~VvVLDF~SLYPSIIiayNIcp~Tlv~~~~~~~~~~~~~~~~~~~~~~~~ 441 (881)
T PHA02528 372 ---------HKKQKYAGAFVKEPVPGAYR-WVVSFDLTSLYPSIIRQVNISPETIAGTFHVAPVHEYINKTAPRPSDEYS 441 (881)
T ss_pred ---------cCCCCCCCcEEecCCCCccc-ceEEEeccccChHHHHHhCCChhhccccccccccccccccccCCCCCcee
Confidence 12357999999999999998 59999999999999999999999998753200 000001
Q ss_pred -cCC-CCCccccCCcchHHHHHHHHHHHHHHHHhcCCCCC----------------------------------------
Q psy6283 550 -CEY-LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLS---------------------------------------- 587 (1030)
Q Consensus 550 -~p~-~p~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~---------------------------------------- 587 (1030)
+|. ......++||||.+|..|++.|.++|+.|++++.+
T Consensus 442 ~~p~G~~F~k~~~GiLP~iL~~Ll~~R~~~Kk~Mk~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (881)
T PHA02528 442 CSPNGWMYRKDIRGVIPTEIKKVFDQRKIYKKKMLAAERNAELIKTILEDLNDSVDTPIDVDYYFDFSDEFKAELKTLTK 521 (881)
T ss_pred EcCCCCeEeCCCCeehHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccchhhhhhhhcccch
Confidence 111 00113469999999999999999999999764322
Q ss_pred ----------hHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHh----hh----cc-c
Q psy6283 588 ----------SDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV----EN----LN-Y 648 (1030)
Q Consensus 588 ----------~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelv----e~----~g-~ 648 (1030)
..++.+||.+|+|+|++|||+|||||+.++||||.++|++||++||.+|+.+...+ ++ .| +
T Consensus 522 ~~l~~~~~~~~~~~~~~d~~Q~A~KI~~NS~YG~lG~~~~r~y~~~~A~aiT~~Gr~~I~~i~~~~~e~l~~~~~~~g~~ 601 (881)
T PHA02528 522 SSLKALLEECEKEIALCNTIQMARKILINSLYGALGNEHFRYYDLRNAEAITLFGQLAIQWIERKMNEYLNKLCKTEDED 601 (881)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhccCcCccCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 14678999999999999999999999999999999999999999999887665443 22 45 6
Q ss_pred eeEEecCcceeeecCCC-CHH------HHH-------HHH------------HHHHHHHhcccceeEEeecchhhhhhhc
Q psy6283 649 EVIYGDTDSLMISCNVN-DYD------SVF-------KIG------------NQIKSECNKLYKQLELDIDGVYKYMLLL 702 (1030)
Q Consensus 649 ~VIYGDTDSI~V~~~~~-d~e------ea~-------~ig------------~~i~~~Vn~~~~~leLe~E~vf~~llll 702 (1030)
.|||||||||||+++.. +.. +.. +++ .++++.+|...+++.|++|++|.+++|+
T Consensus 602 ~VIYGDTDSvfV~~~~~~~~~~~~~~~~~~~lv~~~~~~~~~~l~~~~~~~~~el~e~~~~~~~~~~m~~ek~~~~~~~~ 681 (881)
T PHA02528 602 YVIYGDTDSIYVNLDPLVEKVGEDKFKDTNHWVDFLDKFCKERMEPYIDSSYRELCEYMNNYEHLMFMDREAIAGPGFWT 681 (881)
T ss_pred EEEEEcCCeeEEEeCCcchhhhhccchhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhccccchhHHHHhhHhhhh
Confidence 99999999999998642 110 001 111 1444556655556899999999999999
Q ss_pred ccccceEEeeeecCCCce--eeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHh
Q psy6283 703 KKKKYAALSISKLSNGKM--ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL 780 (1030)
Q Consensus 703 ~KKrYa~l~~~~~~dG~~--~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l 780 (1030)
+||||||+.|+.+ |.. .+++.+||+++||||||++++++|.++++.||.+. . + .+++++.++..++
T Consensus 682 sKKRYAgl~~~~~--g~~~~~~kl~~kGlEtvRsD~~~lak~~q~~vi~~Il~~~-----~-e----~~~~yvk~~i~~~ 749 (881)
T PHA02528 682 AKKRYALNVWDSE--GTRYAEPKLKIMGIETQRSSTPKAVQKALKEAIRRILQEG-----E-E----SLQEYIKEFEKEF 749 (881)
T ss_pred ccccEEEEeccCC--CcccCCCeEEEecceeeecchHHHHHHHHHHHHHHHHhCC-----c-H----hHHHHHHHHHHHH
Confidence 9999999976543 321 24678999999999999999999999999999986 3 3 4555666666777
Q ss_pred hCCCcChhhhHHhhcccCCCCC----------CcchHHHHHH---HHHH
Q psy6283 781 DNGFVPLTLLEITKQLTKAPEG----------GKVCITQIRL---SRNR 816 (1030)
Q Consensus 781 ~~g~vpl~~lvItk~LsK~p~~----------~~~pHV~vA~---r~~~ 816 (1030)
++ +|+++++|+ ++.+++++ +.+|||.+|+ ++++
T Consensus 750 ~~--~d~~~i~~~-~~~~~l~~Y~~~~~~y~k~~pphV~aA~~~~~~~~ 795 (881)
T PHA02528 750 RK--LDYEEIAFV-SSANNIAKYSDDKGIPGKGCPIHIRGALLYNRAVK 795 (881)
T ss_pred Hc--CCHHHEEee-eccCCHHHhcccccccccCCCHHHHHHHHHHHHHh
Confidence 76 999999888 88887655 4589999999 7666
No 13
>cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some members of the archaea also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases. Structural comparison of the thermostable DNA polymerase type B to its mesostable homolog suggests several adaptations to high temperature such as shorter loops, disulfide bridges, and increasing electrostatic interaction at subdomain interfaces.
Probab=100.00 E-value=6.3e-69 Score=611.27 Aligned_cols=304 Identities=37% Similarity=0.563 Sum_probs=268.4
Q ss_pred ccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCCCccccCCcchHHHHHHHHH
Q psy6283 494 AAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573 (1030)
Q Consensus 494 ~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p~~~~~~GIlP~iL~~Ll~~ 573 (1030)
.+|+||+|++|.||||++ |++|||+|||||||++|||||||+++..+....+.. +........+.||+|.+|+.|++.
T Consensus 2 ~~y~Gg~V~~P~~G~y~~-V~~lDf~SLYPSii~~~Ni~~~Ti~~~~~~~~~~~~-~~~~~f~~~~~Gilp~il~~ll~~ 79 (371)
T cd05536 2 ESYEGGIVLEPEKGLHEN-IVVLDFSSLYPSIMIKYNISPDTLVREGCEDCDVEP-QVGHKFRKDPPGFIPSVLEDLLEE 79 (371)
T ss_pred CCCCceEEeCCCCCCcCC-EEEEEcccccHHHHHHHCcChhhcCCCCccccccCC-CCCcEEecCCCCchHHHHHHHHHH
Confidence 369999999999999997 999999999999999999999999876642222210 001111245799999999999999
Q ss_pred HHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhccceeEEe
Q psy6283 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG 653 (1030)
Q Consensus 574 R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~g~~VIYG 653 (1030)
|.++|++|++.+.++.++.+||.+|+|+||+|||+|||||+.+|||||.++|++||+.||.+|+.|++++++.|++||||
T Consensus 80 R~~~K~~mk~~~~~~~~~~~~d~~Q~AlKi~~NS~YG~~g~~~~r~~~~~~A~~iT~~GR~~l~~~~~~i~~~g~~VIYg 159 (371)
T cd05536 80 RRRIKEKMKKLDPESEEYKLLDERQRAIKILANSFYGYMGWANARWYCKECAEAVTAWGREYIKTTIKIAEEKGFKVIYG 159 (371)
T ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHhccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999997666689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeecCCCCHHHHHHHHHHHHHHHhcccceeEEeecchhhhhhhcccccceEEeeeecCCCceeeeceeeeeeeee
Q psy6283 654 DTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVR 733 (1030)
Q Consensus 654 DTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~~leLe~E~vf~~llll~KKrYa~l~~~~~~dG~~~~~~e~KGle~vR 733 (1030)
|||||||+++..+. +...+.++.+.||+.++ |+|++|++|.+|++++||||||+. .+|+ +++||++++|
T Consensus 160 DTDSvfv~~~~~~~--~~~~~~~l~~~i~~~~~-i~le~E~vy~~~l~~~KKrY~g~~----~~g~----i~~KG~e~~R 228 (371)
T cd05536 160 DTDSLFVKIDGADA--VKKKVKKLLKYINEELP-LELEIEKFYKRGFFVTKKRYAGLT----EDGK----IDVVGLEVVR 228 (371)
T ss_pred cCcccEEeecCchH--HHHHHHHHHHHHHhcCC-eeEEEeeeeHHHHHhhhceeEEEc----cCCe----EEEEeeeeEe
Confidence 99999999986542 55667788889999887 999999999999999999999984 3564 4799999999
Q ss_pred CChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhcccCCCCC--CcchHHHHH
Q psy6283 734 RDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG--GKVCITQIR 811 (1030)
Q Consensus 734 RD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~LsK~p~~--~~~pHV~vA 811 (1030)
||||+|+++++.++|+.||.++ ++++++ .++.++.++|.+|++|+++|+|+++|+|+|++ ..+|||+||
T Consensus 229 rD~~~~~k~~~~~~l~~ll~~~-----~~~~~~----~~~~~~~~~l~~g~~~~~dlii~k~l~k~~~~Y~~~~~hv~~a 299 (371)
T cd05536 229 RDWSEIAKETQARVLEAILKEG-----DVEEAV----KIVKEVIEKLKRGEVPPEKLVIWKQLTKDLSEYKATGPHVAAA 299 (371)
T ss_pred CccHHHHHHHHHHHHHHHHcCC-----CHHHHH----HHHHHHHHHHHcCCCCHHHeEEeHHhcCCHHHhCCCCcHHHHH
Confidence 9999999999999999999988 766654 55666778899999999999999999999988 779999999
Q ss_pred HHHHHcCC
Q psy6283 812 LSRNRRGR 819 (1030)
Q Consensus 812 ~r~~~~g~ 819 (1030)
++|.++|.
T Consensus 300 ~~l~~~g~ 307 (371)
T cd05536 300 KKLAKRGY 307 (371)
T ss_pred HHHHhcCC
Confidence 99998864
No 14
>cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=100.00 E-value=9.2e-68 Score=599.46 Aligned_cols=308 Identities=27% Similarity=0.401 Sum_probs=263.4
Q ss_pred CCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCCC--ccccCCcchHHHHH
Q psy6283 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPE--HQVDTGILPSEIKK 569 (1030)
Q Consensus 492 ~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p~--~~~~~GIlP~iL~~ 569 (1030)
+..+|+||+|++|++|||++ |++|||+|||||||++|||||+|+++..++.... ..|..+. ...+.||+|.+|..
T Consensus 9 ~~~~y~Gg~V~~P~~G~y~~-V~~lDF~SLYPSIi~~~Ni~~~T~~~~~~~~~~~--~~p~~~~~~~~~~~Gilp~il~~ 85 (372)
T cd05530 9 KGKKYRGAIVLEPPPGIFFN-VVVLDFASLYPSIIKVWNLSYETVNCPHCECKTN--EVPEVGHWVCKKRPGITSQIIGL 85 (372)
T ss_pred cCCCCCCCEeecCCCCcccc-EEEEEcccccHHHHHHhCCChhhcccCcccccce--ecCCCCceEEecCCCccHHHHHH
Confidence 34689999999999999998 9999999999999999999999999765421111 1133221 14689999999999
Q ss_pred HHHHHHHHH-HHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhccc
Q psy6283 570 LVESRRQVK-ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNY 648 (1030)
Q Consensus 570 Ll~~R~~vK-k~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~g~ 648 (1030)
|++.|.++| ++|+....+|.++.+||++|+|+||+|||+|||+|+.+++|||+++|++||++||.+|..|++++++.|+
T Consensus 86 L~~~R~~~~k~~~k~~~~d~~~~~~ld~~Q~alKi~~NS~YG~~g~~~~~~~~~~~A~~it~~GR~~l~~~~~~~~~~g~ 165 (372)
T cd05530 86 LRDLRVKIYKKKAKDKSLDEEMRQWYDVVQSAMKVFINASYGVFGAENFPLYCPPVAESTTALGRYIITSTIKKARELGL 165 (372)
T ss_pred HHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHhccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 999999865 4555544489999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhcccceeEEeecchhhhhhhc-ccccceEEeeeecCCCceeeeceee
Q psy6283 649 EVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLL-KKKKYAALSISKLSNGKMICSQEIK 727 (1030)
Q Consensus 649 ~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~~leLe~E~vf~~llll-~KKrYa~l~~~~~~dG~~~~~~e~K 727 (1030)
+|||||||||||+++. .+.+ .+|.+.|++.+ +++||+|++|++++|. +||||||+. .+|+ +++|
T Consensus 166 ~VIYGDTDSvfv~~~~--~~~~----~~i~~~i~~~~-~i~le~E~~y~~~ll~~~KKrY~g~~----~~gk----i~~K 230 (372)
T cd05530 166 KVLYGDTDSLFLWNPP--QEQL----EDLVEWVEKEL-GLDLELDKEYRYVVFSGLKKNYLGVT----KDGS----VDIK 230 (372)
T ss_pred EEEEEeccceEEecCC--hhHH----HHHHHHHhhcc-CceEEEEEEEeeeeeccccccEEEEe----cCCc----EEEE
Confidence 9999999999999764 2333 45566777766 4999999999988775 799999984 3564 5899
Q ss_pred eeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhcccCCCCC---Cc
Q psy6283 728 GVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG---GK 804 (1030)
Q Consensus 728 Gle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~LsK~p~~---~~ 804 (1030)
|++++|||||+|+++++.++|+.||.+++.. +.+.+++.+++++.+...+|.+|++|+++|+|+++|+|+|++ .+
T Consensus 231 Gie~~RrD~~~~~k~~~~~vl~~ll~~~~~~--~~~~~~~~i~~~~~~~~~~l~~g~~~~~~lvi~k~L~K~~~~Y~~~~ 308 (372)
T cd05530 231 GLLGKKRNTPEFVKELFYEVIEILSAVNSPE--DFEKAREKIRDIVKGVYKRLKKKEYTLDQLAFKVMLSKPPEEYTKNT 308 (372)
T ss_pred eEEEEeCCchHHHHHHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHHHHHHHcCCCCHHHheeehhccCCHHHhcCCC
Confidence 9999999999999999999999999987211 234567789999999999999999999999999999999988 56
Q ss_pred chHHHHHHHHHHcCC
Q psy6283 805 VCITQIRLSRNRRGR 819 (1030)
Q Consensus 805 ~pHV~vA~r~~~~g~ 819 (1030)
+|||+||++|.+.|.
T Consensus 309 ~phv~aa~~~~~~g~ 323 (372)
T cd05530 309 PQHVKAARQLEKYGR 323 (372)
T ss_pred CHHHHHHHHHHhcCC
Confidence 899999999988764
No 15
>PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included.; InterPro: IPR006134 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known, however, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain of DNA polymerase B appears to consist of more than one activities, possibly including elongation, DNA-binding and dNTP binding [].; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 1NOY_A 1NOZ_B 2CW7_A 2CW8_A 1WNS_A 2XHB_A 2VWK_A 2VWJ_A 1TGO_A ....
Probab=100.00 E-value=8.6e-69 Score=627.70 Aligned_cols=355 Identities=37% Similarity=0.607 Sum_probs=297.5
Q ss_pred chhHHHHHHHHHHHhhcCeeccCCccccCcCCCccccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHH
Q psy6283 447 GRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSII 526 (1030)
Q Consensus 447 gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII 526 (1030)
||+.|+|++||+.+++.||++|++...... .........+|+||+|++|.+|||+++|.+|||+|||||||
T Consensus 1 gq~~~v~~~ll~~~~~~~~~~p~~~~~~~~---------~~~~~~~~~~y~Gg~V~~P~~G~~~~v~~~lDF~SLYPsii 71 (466)
T PF00136_consen 1 GQQIRVESLLLREAHRRNYIIPSKKERPEG---------FTSKSEQKEKYEGGYVLEPKPGLYENVVSVLDFASLYPSII 71 (466)
T ss_dssp -CHHHHHHHHHHHHHHTTBE-B-HHHHHHT---------HHHHHHHCTCEEEC-BE--HSSEEEEEEEEEEETTHHHHHH
T ss_pred CchhhHHHHHHHHHHHCCEEeeCCcccccc---------cccccccccccccceeeccccccccCceeeeecccccHHHH
Confidence 689999999999999999999987643100 00011235789999999999999999666899999999999
Q ss_pred HHhccccccccccC-CCcccc---------cccc--C---CCCCccccCCcchHHHHHHHHHHHHHHHHhcCCCCChHH-
Q psy6283 527 QEYNICFTTIPVRM-LQDSDI---------TTLC--E---YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL- 590 (1030)
Q Consensus 527 ~~~NIc~tTv~~~~-~d~~~i---------~~~~--p---~~p~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~- 590 (1030)
++|||||+|+++.. +....+ ...+ + .+.......||||.+|+.|++.|.++|+.|++. .++.+
T Consensus 72 ~~~Ni~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gilp~~l~~~l~~R~~~K~~~~~~-~~~~~~ 150 (466)
T PF00136_consen 72 IAYNICPETIVDDDECKDNEVSPDIKYDYGPFIVGSPVGVRFVKKGVRPGILPEILEELLEKRKEIKKLMKKA-KDPDEE 150 (466)
T ss_dssp HHTTHSTTTBTCTTHCSSEEEHTTCCCCTCEEEECSCCSEEEESSTCSHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHH
T ss_pred HhccCCcceEecchhhhcccccccccccccceeecCCceeeecccCcccccChHHHHHHHHHHHHHhhhhhhh-ccchhh
Confidence 99999999999875 211111 0000 1 122346789999999999999999999999984 45554
Q ss_pred HHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhc--cceeEEecCcceeeecCCCCHH
Q psy6283 591 LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL--NYEVIYGDTDSLMISCNVNDYD 668 (1030)
Q Consensus 591 ~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~--g~~VIYGDTDSI~V~~~~~d~e 668 (1030)
+..||++|+|+||+|||+|||||+.+||||++++|++||++||.+|+.|++++++. |++|||||||||||.++..+.+
T Consensus 151 ~~~~d~~Q~a~Ki~~NS~YG~~g~~~~r~~~~~~a~~iT~~GR~~i~~~~~~~~~~~~g~~viYgDTDSv~v~~~~~~~~ 230 (466)
T PF00136_consen 151 YAILDARQLALKIIANSFYGYLGAKNSRFYCKEIAEAITATGREIIKKAIEIIEEMEFGFEVIYGDTDSVFVQFPDSDKE 230 (466)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHTSTTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHSCTEEEEEEETTEEEEECTTCHHH
T ss_pred HHHHHHHHHhhcccceeeEeecCccccchhhhhhhheehhhhHhhHHHHHHHHHhhcccceEEEEcccceEEecCCCcHH
Confidence 89999999999999999999999999999999999999999999999999999998 9999999999999999988888
Q ss_pred HHHHHHHHHHHHHhcc--cceeEEeecchhhhhhhcccccceEEeeeecCCCceeeeceeeeeeeeeCChHHHHHHHHHH
Q psy6283 669 SVFKIGNQIKSECNKL--YKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746 (1030)
Q Consensus 669 ea~~ig~~i~~~Vn~~--~~~leLe~E~vf~~llll~KKrYa~l~~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~ 746 (1030)
++.+.+.++++.||.. +.+|+|++|++|.+++|++|||||++.+++. |...+++++||++++|||||+|+++++..
T Consensus 231 ~~~~~~~~l~~~i~~~~~~~~i~le~E~~y~~~~l~~KKrY~~~~~~~~--~~~~~~~~~kG~e~~RrD~~~~~k~~~~~ 308 (466)
T PF00136_consen 231 DAKKKGEELAKEINSELFPSPIKLEFEKVYRWFILLAKKRYAGLKYDNE--GKKKGKIKIKGLELVRRDWCPFVKDIQRE 308 (466)
T ss_dssp HHHHHHHHHHHHHHHHSCSTTHEEEEEEEEEEEEEEETTEEEEEETCCC--EEETSEEEEESSSGGSSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhcCCCceeeecccEEEEEEEccCCccceeeeec--ccccceeEEeccccccCchhHHHHHHHHH
Confidence 8999999999999975 4689999999999999999999999988754 33335679999999999999999999999
Q ss_pred HHHHHhccCCCCCCChhHHHHHHH----HHHHHHHHHhhCCCcChhhhHHhhcccCCCCC---CcchHHHHHHHHHHcC
Q psy6283 747 VISQILDEQSYTDYSLDDRLQNIH----EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG---GKVCITQIRLSRNRRG 818 (1030)
Q Consensus 747 vL~~IL~~~~~~~~~~e~~v~~I~----~~l~~~~~~l~~g~vpl~~lvItk~LsK~p~~---~~~pHV~vA~r~~~~g 818 (1030)
+|+.||.+. +.+.+.+.|. ++|..+..++.++.+|+++|+|++++++++++ ...|||.+|.+|+.+|
T Consensus 309 ~l~~il~~~-----~~~~~~~~i~~~~~e~l~~~~~~l~~~~~~~~~li~~k~l~k~~~~Y~~~~~~hv~~a~rl~~~~ 382 (466)
T PF00136_consen 309 VLEIILKGK-----DPEEAVEKIKEVIIEYLKKYIEKLRNGEVPIEDLIISKRLSKDLEEYKKKTPPHVRAAKRLKKRG 382 (466)
T ss_dssp HHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHTTCSHGGGGHEEEECCSCGGGCSSSHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCC-----CHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHhhhccCCcccccccCCcHHHHHHHHHhhh
Confidence 999999999 7777766554 77778888899999999999999999999988 4455999999999988
No 16
>cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proven by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=100.00 E-value=5.9e-67 Score=593.91 Aligned_cols=293 Identities=28% Similarity=0.454 Sum_probs=255.7
Q ss_pred cccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCc--cccccccCCCCC--ccccCCcchHHHHHH
Q psy6283 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQD--SDITTLCEYLPE--HQVDTGILPSEIKKL 570 (1030)
Q Consensus 495 ~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~--~~i~~~~p~~p~--~~~~~GIlP~iL~~L 570 (1030)
.++||+|++|++|||++ |++|||+|||||||++|||||+|++...+.+ +.. .|.... -....||||.+|+.|
T Consensus 2 ~~~Gg~V~eP~~G~y~~-V~vlDF~SLYPSII~~~Ni~p~t~~~~~~~~~~~~~---~~~~~~~~f~~~~Gilp~~l~~l 77 (371)
T cd05537 2 SSPGGYVMDSKPGLYKN-VLVLDFKSLYPSIIRTFLIDPLGLIEGLKAPDPEDL---IPGFLGARFSREKHILPDLIARL 77 (371)
T ss_pred CCCCcEEeCCCCCccCc-eEEEEcccccHHHHHHhCCCCceecCCCCCCCcccc---ccCCCCCeEecCCCchHHHHHHH
Confidence 46899999999999997 9999999999999999999999987654311 111 011111 023469999999999
Q ss_pred HHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhcccee
Q psy6283 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEV 650 (1030)
Q Consensus 571 l~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~g~~V 650 (1030)
++.|+++|+.|+. .+|+|+||+|||+|||+|++++||||+++|++||++||.+|+.|+++++++|++|
T Consensus 78 ~~~R~~~K~~~~~------------~~q~AlKi~~Ns~YG~~g~~~~r~~~~~~A~~iT~~GR~~l~~~~~~~e~~g~~V 145 (371)
T cd05537 78 WAARDEAKREKNA------------PLSQAIKIIMNSFYGVLGSTGCRFFDPRLASSITLRGHEIMKQTRAWIEQQGYQV 145 (371)
T ss_pred HHHHHHHHHhccH------------HHHHhHhhheecceeecccccccccChHHHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 9999999998753 3799999999999999999999999999999999999999999999999999999
Q ss_pred EEecCcceeeecCC-CCHHHHHHHHHHHHHHHhcccc-----------eeEEeecchhhhhhhc--------ccccceEE
Q psy6283 651 IYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYK-----------QLELDIDGVYKYMLLL--------KKKKYAAL 710 (1030)
Q Consensus 651 IYGDTDSI~V~~~~-~d~eea~~ig~~i~~~Vn~~~~-----------~leLe~E~vf~~llll--------~KKrYa~l 710 (1030)
||||||||||+++. .+.+++.++|.+|++.||+.|+ +++|+||++|.++||+ +||||||+
T Consensus 146 iYgDTDSvfV~~~~~~~~~~~~~~~~~l~~~In~~~~~~~~~~~~~~~~l~Le~Ekvy~~~ll~~~~~~~~~~KKrYag~ 225 (371)
T cd05537 146 IYGDTDSTFVWLGEELDAAEAQAIGKELASQINQWWAQKLKEEFGLESFLEIEFETHYSRFFMPTIRGSDEGSKKRYAGL 225 (371)
T ss_pred EEecCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCceEEEeeeeeeeeeeccccccccccceEEEE
Confidence 99999999999986 6888999999999999998652 5899999999999986 79999999
Q ss_pred eeeecCCCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhh
Q psy6283 711 SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLL 790 (1030)
Q Consensus 711 ~~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~l 790 (1030)
.++ +++| ++++||++++|||||+|+++++.++|+.||.++ ++ ++++.++..+|++|.+| ++|
T Consensus 226 ~~~-~~~~----~i~~KGle~vRrD~~~l~k~~~~~vl~~il~~~-----~~-------~~~~~~~~~~l~~g~~~-~~l 287 (371)
T cd05537 226 KST-DGGD----ELVFKGLETVRSDWTPLARQFQKELYERVFNDE-----PY-------EGFIKETVEELLAGELD-ELL 287 (371)
T ss_pred EEE-CCCc----EEEeecceeEecchHHHHHHHHHHHHHHHhcCC-----CH-------HHHHHHHHHHHHcCCCc-hHh
Confidence 875 3344 568999999999999999999999999999998 54 35566777899999999 999
Q ss_pred HHhhcccCCCCC---CcchHHHHHHHHHHcCCcc
Q psy6283 791 EITKQLTKAPEG---GKVCITQIRLSRNRRGRRR 821 (1030)
Q Consensus 791 vItk~LsK~p~~---~~~pHV~vA~r~~~~g~~~ 821 (1030)
+|+++|+|+|++ +++|||+||++|.+.|...
T Consensus 288 vi~k~L~k~~~~Y~~~~~phv~aa~~~~~~~~~~ 321 (371)
T cd05537 288 VYRKRLRRPLSEYTKNVPPHVQAARLADQINREL 321 (371)
T ss_pred EEehhcCCCHHHcCCCCCcHHHHHHHHHhcCCcc
Confidence 999999999987 5689999999999988643
No 17
>cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proved by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=100.00 E-value=2.1e-64 Score=568.59 Aligned_cols=262 Identities=27% Similarity=0.347 Sum_probs=237.5
Q ss_pred cccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCCCccccCCcchHHHHHHHHHH
Q psy6283 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESR 574 (1030)
Q Consensus 495 ~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p~~~~~~GIlP~iL~~Ll~~R 574 (1030)
+|+||+|++|.||+|++ |++|||+|||||||++|||||+. ...||+|.+|+.|++.|
T Consensus 2 ~~~GG~v~~p~~Gl~~~-V~~lDf~SLYPSIi~~~ni~p~~----------------------~~~Gilp~il~~Ll~~R 58 (347)
T cd05538 2 KFEGGYAYVFITGVLGP-IVHADVASLYPSIMLAYRICPAR----------------------DSLGIFLALLKYLVELR 58 (347)
T ss_pred CcCCceEcccCCcCcCc-eEEEEcccchHHHHHHhCCCCCC----------------------CCCcccHHHHHHHHHHH
Confidence 69999999999999997 99999999999999999999852 25699999999999999
Q ss_pred HHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhccceeEEec
Q psy6283 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 654 (1030)
Q Consensus 575 ~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~g~~VIYGD 654 (1030)
.++|+.|++ ..+|.++.+||.+|+|+||++||+|||||+.+++|||+++|++||++||.+|..|+++++++|++|||||
T Consensus 59 ~~~K~~~k~-~~~~~~~~~~d~~Q~AlKi~~NS~YG~lG~~~~r~~~~~~A~~iT~~GR~~L~~~~~~~e~~g~~VIygD 137 (347)
T cd05538 59 LAAKESARA-AARPAERDAFKAKQAAFKVLINSFYGYLGTGLHAFSDPEAAAEVTRLGRELLKLMIRWLRRRGATPVEVD 137 (347)
T ss_pred HHHHHHHhc-CCChHHHHHHHHHHHHHhhhhhhchhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 999999998 5688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeecCCC-C-HHHHHHHHHHHHHHHhccc-ceeEEeecchhhhhhhcccccceEEeeeecCCCceeeeceeeeeee
Q psy6283 655 TDSLMISCNVN-D-YDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDV 731 (1030)
Q Consensus 655 TDSI~V~~~~~-d-~eea~~ig~~i~~~Vn~~~-~~leLe~E~vf~~llll~KKrYa~l~~~~~~dG~~~~~~e~KGle~ 731 (1030)
||||||.++.. + .+++ .++.++|++.+ .+|+|++|++|.+||+++|||||++. .+|+ +++||+++
T Consensus 138 TDSi~v~~~~~~~~~~~~----~~~~~~i~~~~~~~i~le~e~~y~~~l~~~KKrYa~~~----~~gk----i~~KG~e~ 205 (347)
T cd05538 138 TDGIYFIPPNGVDTEDEE----EELVRELSSTLPKGITVEFDGRYRAMFSYKIKNYALLD----YDGK----LIVKGSAF 205 (347)
T ss_pred CCeeEEEeCCCCChHHHH----HHHHHHHHHhCCCCeEEEEhHHHHHHHhhcCceEEEEe----cCCc----EEEECCCc
Confidence 99999987642 2 3333 45666676655 58999999999999999999999974 3565 47999999
Q ss_pred eeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhcccCCCCC
Q psy6283 732 VRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802 (1030)
Q Consensus 732 vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~LsK~p~~ 802 (1030)
||||||+|+++++.++|+.||+++ .+.+++++.++..+|++|.+|+++|+|+++|+|+|++
T Consensus 206 vRrD~~~~~k~~~~~vl~~ll~~~----------~~~~~~~~~~~~~~l~~~~~~~~~l~i~k~l~k~~~~ 266 (347)
T cd05538 206 RSRGIEPFLREFLREAVRLLLQGD----------GAGVHDLYEDYLRRLRSHELPISDLARTETLKESPEE 266 (347)
T ss_pred ccCCchHHHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHHHHcCCCCHHHEEEEeecCCCHHH
Confidence 999999999999999999999875 2467888889999999999999999999999999987
No 18
>cd00145 POLBc DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic (polymerase) and degradative modes (exonucleases) and play roles in the processes of DNA replication, repair, and recombination. DNA-dependent DNA polymerases can be classified in six main groups based upon their phylogenetic relationships with E. coli polymerase I (class A), E. coli polymerase II (class B), E. coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB, and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family B DNA polymerases include E. coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative DNA polymerases (alpha, delta, epsilon, and zeta), and eukaryotic viral and plasmid-borne enzymes. DNA polymerase is
Probab=100.00 E-value=4.9e-63 Score=554.09 Aligned_cols=268 Identities=36% Similarity=0.524 Sum_probs=236.3
Q ss_pred cccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCcccccc-ccCCCCCccccCCcchHHHHHHHHH
Q psy6283 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITT-LCEYLPEHQVDTGILPSEIKKLVES 573 (1030)
Q Consensus 495 ~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~-~~p~~p~~~~~~GIlP~iL~~Ll~~ 573 (1030)
+|+||+|++|.+|+|+ +|++|||+|||||||++|||||+|++...+.. .... ....+.....++||+|.+|+.|++.
T Consensus 2 ~y~Gg~V~~P~~G~~~-~V~~lDf~SLYPSIi~~~Ni~~~T~~~~~~~~-~~~~~~~~~~~~~~~~~Gilp~iL~~Ll~~ 79 (323)
T cd00145 2 PYEGGYVFDPIPGLYE-NVIVLDFKSLYPSIIITYNLSPTTLVGNGEIA-APEDYIGVGFRSPKDRKGLLPRILEELLNF 79 (323)
T ss_pred CCCCcEEecCcccccC-ceEEeecCCccHHHHHHhCCCccccccccccc-CcccccCccccccCCCCCCCHHHHHHHHHH
Confidence 6999999999999998 59999999999999999999999998765311 0100 0012344567899999999999999
Q ss_pred HHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhccceeEEe
Q psy6283 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG 653 (1030)
Q Consensus 574 R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~g~~VIYG 653 (1030)
|.++|+.|++.+.++.++.+||.+|+|+||+|||+|||+|+++|||||.++|++||+.||.+|+.|+++++++|++||||
T Consensus 80 R~~~K~~mk~~~~~~~~~~~~d~~Q~AlKi~~NS~YG~~G~~~~r~~~~~~A~~IT~~GR~~l~~~~~~ie~~g~~VIYG 159 (323)
T cd00145 80 RDEAKKRMKAAKLAPEERVLYDNRQQALKVLANSFYGYLGAKFFRFYDPEVAASITSFGREIIQDTIALVEEHGARVIYG 159 (323)
T ss_pred HHHHHHHHhhCcCCHHHHHHHHHHhhhhheeeecceeecccccccCCChHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 99999999997777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeeecCC-CCHHHHHHHHHHHHHHHhcccceeEEeecchhhhhhhcccccceEEeeeecCCCceeeeceeeeeeee
Q psy6283 654 DTDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVV 732 (1030)
Q Consensus 654 DTDSI~V~~~~-~d~eea~~ig~~i~~~Vn~~~~~leLe~E~vf~~llll~KKrYa~l~~~~~~dG~~~~~~e~KGle~v 732 (1030)
|||||||.++. .+.+++.++++++.+.| ..+.+|+||+|++|.++++++||||||+.+++. ...+++++||++++
T Consensus 160 DTDSifv~~~~~~~~~~~~~~~~~~~~~i-~~~~~i~le~E~vy~~~ll~~KKrYag~~~~~~---~~~~~~~~KG~e~v 235 (323)
T cd00145 160 DTDSIFVSLPKMGTKEDAIKEGREILQEL-ADEHLLELEFEKVYLPFFLGKKKRYAGLDIWKG---QDEGKIDIKGLETR 235 (323)
T ss_pred CCCceEEEeCCCCCHHHHHHHHHHHHHHh-CCCCCeEEEEchhhHHHHHhhhhhEEEEEEEcC---CCCceEEEEcceEE
Confidence 99999999998 78999999999999999 455689999999999999999999999988752 22346799999999
Q ss_pred eCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHH
Q psy6283 733 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 776 (1030)
Q Consensus 733 RRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~ 776 (1030)
|||||+|+++++.++|+.||.++ .+++.+++++.++
T Consensus 236 RrD~~~~~k~~~~~vl~~ll~~~--------~~~~~v~~~~~~l 271 (323)
T cd00145 236 RRDSPPLVKKFQKEVLELILEEE--------RKVEAVKEYIDEL 271 (323)
T ss_pred ecCcHHHHHHHHHHHHHHHHcCC--------chHHHHHHHHHHh
Confidence 99999999999999999999953 2466677776655
No 19
>KOG0968|consensus
Probab=100.00 E-value=9.5e-63 Score=582.32 Aligned_cols=395 Identities=24% Similarity=0.358 Sum_probs=347.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCcc
Q psy6283 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEE 481 (1030)
Q Consensus 402 l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d 481 (1030)
+..++.|-+.-|.+.++|+.+++++.-+.+++++.|+.+-.+++.|++.|+|++||+-+|..|||.|.+.....
T Consensus 867 r~~~l~y~l~Ra~~NlelLsq~d~i~k~~E~ARv~GIdF~sV~tRGSQ~rVESmllRiAk~~Nyi~~SPs~kQv------ 940 (1488)
T KOG0968|consen 867 RNDVLNYLLSRARLNLELLSQLDWILKNSEMARVIGIDFHSVLTRGSQFRVESMLLRIAKPMNYIAPSPSHKQV------ 940 (1488)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHhhcceeeEEeeccchhhHHHHHHHHhcccccccCCccHHHH------
Confidence 68889999999999999999999999999999999999999999999999999999999999999997653211
Q ss_pred ccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCC---ccccc-----------
Q psy6283 482 TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ---DSDIT----------- 547 (1030)
Q Consensus 482 ~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d---~~~i~----------- 547 (1030)
....+.-+=.+|++|+.-||.+||+||||.||||||||+||+||+|+.+.... .+++.
T Consensus 941 --------~~q~A~EcvPLVMEPeS~fY~~PViVLDFQSLYPSivIAYNyCySTcLG~v~~l~~~~e~~LG~s~~s~~~d 1012 (1488)
T KOG0968|consen 941 --------AMQGAPECVPLVMEPESAFYFDPVIVLDFQSLYPSIVIAYNYCYSTCLGKVGNLNQMNEIKLGVSKYSLPPD 1012 (1488)
T ss_pred --------hhcCCccccceeecchhhhccCceEEEEchhhcchHHHhHHHHHHHhhhHHHhhccccceeeeeeeccCCHH
Confidence 11234556789999999999999999999999999999999999999875420 11110
Q ss_pred -------c--ccCC---CCCccccCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCC
Q psy6283 548 -------T--LCEY---LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFP 615 (1030)
Q Consensus 548 -------~--~~p~---~p~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~ 615 (1030)
+ ..|+ ++.+++++|+||.+|+++|+.|..||+.||..+.+......+|.||+||||+||..|||+.+.
T Consensus 1013 il~~~~ndV~isPNgv~yVK~sVRkgvLpkmLeEIL~tRiMVKkaMK~~~~~~~L~RiLnaRQLALKLiANVTYGYTsA~ 1092 (1488)
T KOG0968|consen 1013 ILVLAKNDVTISPNGVMYVKPSVRKGVLPKMLEEILATRIMVKKAMKRTKDNKKLKRILNARQLALKLIANVTYGYTSAN 1092 (1488)
T ss_pred HHHHHhcceeeCCCceEEechhhhhhhHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHhhhHHHHHHHHhhccccccccc
Confidence 0 1232 445678999999999999999999999999965466677899999999999999999999998
Q ss_pred CC-CCCCHHHHHHHHHHhHHHHHHHHHHhhh---ccceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhcccc-eeEE
Q psy6283 616 NS-RFFAQPLAALVTAKGREILLNTKSLVEN---LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK-QLEL 690 (1030)
Q Consensus 616 ~s-rfy~~~lA~~IT~~GR~iL~~tkelve~---~g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~-~leL 690 (1030)
.| |++|.++|.+|..+||++|.+++++|+. +|++||||||||+||.+++.+.++||.||.+|++.|+..+| |+.|
T Consensus 1093 FSGRMPCaElADsIV~~GRETLEraIe~Vn~~d~w~AkVVYGDTDSmFVlL~GaT~eeAF~IGq~iAe~VT~~NP~PV~L 1172 (1488)
T KOG0968|consen 1093 FSGRMPCAELADSIVQKGRETLERAIEMVNRGDYWGAKVVYGDTDSMFVLLPGATVEEAFEIGQEIAEAVTNSNPKPVVL 1172 (1488)
T ss_pred cCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcCCeEEEEcCCCceEEEecCccHHHHHHHHHHHHHHHHhcCCCCeEE
Confidence 87 9999999999999999999999999985 89999999999999999999999999999999999998875 8999
Q ss_pred eecchhhhhhhcccccceEEeeeecCCCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHH
Q psy6283 691 DIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770 (1030)
Q Consensus 691 e~E~vf~~llll~KKrYa~l~~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~ 770 (1030)
.||+||.+++|++||||+|++|+..... .+.++.||+++||||.||.+..+...+|..|++.+ + +..|+
T Consensus 1173 KfEKVY~PCvL~tKKRYVG~~YEs~~Qk--~PiFDAKGIETVRRDtcPavakilEksL~LlFetk-----d----lS~IK 1241 (1488)
T KOG0968|consen 1173 KFEKVYHPCVLLTKKRYVGFMYESPNQK--EPIFDAKGIETVRRDTCPAVAKILEKSLRLLFETK-----D----LSKIK 1241 (1488)
T ss_pred EeeeecccceeeeccceeeeeeccCccc--CCccccccceeeeccCcHHHHHHHHHHHHHHhhcc-----c----HHHHH
Confidence 9999999999999999999999865432 24679999999999999999999999999999987 4 67899
Q ss_pred HHHHHHHHHhhCCCcChhhhHHhhcccC--CCCC-CcchHHHHHHHHHHcCCcc
Q psy6283 771 EHMKKIRTDLDNGFVPLTLLEITKQLTK--APEG-GKVCITQIRLSRNRRGRRR 821 (1030)
Q Consensus 771 ~~l~~~~~~l~~g~vpl~~lvItk~LsK--~p~~-~~~pHV~vA~r~~~~g~~~ 821 (1030)
.|+...+.++..|++++.||++.|.+.- .... ...|...||.|++....+.
T Consensus 1242 ~y~q~~~~ki~~Gkvs~qDF~FaKEvRl~~~~~~~~~pP~avva~r~i~~DpR~ 1295 (1488)
T KOG0968|consen 1242 KYLQNVCNKIQEGKVSFQDFCFAKEVRLEKYYSASAAPPGAVVARRRITKDPRH 1295 (1488)
T ss_pred HHHHHHHHHHhhCCcchhhheeeeeecceeccccccCCchHHHHHHHhccCCcc
Confidence 9999999999999999999999998876 3333 5577888998888766543
No 20
>cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=100.00 E-value=2.6e-62 Score=552.80 Aligned_cols=290 Identities=28% Similarity=0.456 Sum_probs=246.3
Q ss_pred ccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCC--CccccCCcchHHHHHHH
Q psy6283 494 AAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLP--EHQVDTGILPSEIKKLV 571 (1030)
Q Consensus 494 ~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p--~~~~~~GIlP~iL~~Ll 571 (1030)
.+|.||+|++|.+|||++ |++|||+|||||||++|||||+|+++.++..... +... ....+.||+|.+|+.|+
T Consensus 3 ~~~~Gg~V~~p~~G~~~~-V~~lDF~SLYPSii~~~ni~~~ti~~~~~~~~~~----~~~~~~~~~~~~gilp~~l~~l~ 77 (352)
T cd05531 3 LADRGGLVFQPEPGLYEN-VAQIDFSSMYPSIIVKYNISPETINCRCCECRDH----VYLGHRICLKRRGFLPEVLEPLL 77 (352)
T ss_pred cCCCCcEEecCCCCccCc-eEEEEccccchHHHHHhCCChhhccccCcccccC----CCCCceEecCCCCchHHHHHHHH
Confidence 479999999999999997 9999999999999999999999998765311111 1111 12468999999999999
Q ss_pred HHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhccceeE
Q psy6283 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVI 651 (1030)
Q Consensus 572 ~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~g~~VI 651 (1030)
+.|.++|+.|++.+ + +|.+|+|+||+|||+|||||+++|+||+.++|++||+.||.+|+.|+++++++|++||
T Consensus 78 ~~R~~~K~~~k~~~-~------~d~~q~AlKi~~NS~YGylG~~~~~f~~~~~A~~vT~~GR~~L~~~~~~~e~~g~~VI 150 (352)
T cd05531 78 ERRLEYKRLKKEED-P------YAGRQKALKWILVTSFGYLGYKNAKFGRIEVHEAITAYGRKILLRAKEIAEEMGFRVL 150 (352)
T ss_pred HHHHHHHHHhhcCC-C------chHHHhhheeeeecccccccccccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 99999999999742 2 3999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCcceeeecCCCCHHHHHHHHHHHHHHHhcccceeEEeecchhhhhhhc-------ccccceEEeeeecCCCceeeec
Q psy6283 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLL-------KKKKYAALSISKLSNGKMICSQ 724 (1030)
Q Consensus 652 YGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~~leLe~E~vf~~llll-------~KKrYa~l~~~~~~dG~~~~~~ 724 (1030)
|||||||||+++. ... +++.+|++.+ +++|++|++|.+++|+ .||||+|+.. +|+ +
T Consensus 151 ygDTDSvfv~~~~----~~~----~~~~~i~~~~-~i~l~le~~y~~~~~~~~~~~~~~kKrY~g~~~----~g~----i 213 (352)
T cd05531 151 HGIVDSLWIQGRG----DIE----ELAREIEERT-GIPLKLEGHYDWIVFLPERDGLGAPNRYFGRLS----DGE----M 213 (352)
T ss_pred EEccccceeecCc----hHH----HHHHHHHHhc-CCceEEEEEEEEEEeeccccccCcceeEEEecC----CCc----E
Confidence 9999999999742 233 3444555555 4889999999998765 5899999852 564 4
Q ss_pred eeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHH---HHHHHHHHHHHHHHhhCCCcChhhhHHhhcccCCCC
Q psy6283 725 EIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR---LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801 (1030)
Q Consensus 725 e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~---v~~I~~~l~~~~~~l~~g~vpl~~lvItk~LsK~p~ 801 (1030)
++||++++|||||+|++++|..+|+.||.++ +++++ ++.+++++.+...+|.+|. +++|+|+++|+|+|+
T Consensus 214 ~~KG~e~vRrD~~~~~k~~~~~vl~~ll~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~lvi~k~l~k~~~ 286 (352)
T cd05531 214 KVRGIELRRRDTPPFVKKFQEEALDILASAK-----TPEELLKLREEALDLFRRYLQRLREGD--LEDLIIEKKISKRSS 286 (352)
T ss_pred EEEeeEEEeCCchHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHHHHHHhcCC--hHHEEEEEEecCCHH
Confidence 7999999999999999999999999999998 77653 5678889999999999997 999999999999998
Q ss_pred C-CcchHHHHHHHHHHcCCc
Q psy6283 802 G-GKVCITQIRLSRNRRGRR 820 (1030)
Q Consensus 802 ~-~~~pHV~vA~r~~~~g~~ 820 (1030)
+ ...+|. ||++|++.|..
T Consensus 287 ~Y~~~~~~-~a~~l~~~g~~ 305 (352)
T cd05531 287 EYKVLAST-ALKALRAKGVS 305 (352)
T ss_pred HcCCchHH-HHHHHHhCCCC
Confidence 8 444444 89999888743
No 21
>PHA03334 putative DNA polymerase catalytic subunit; Provisional
Probab=100.00 E-value=2.3e-50 Score=489.93 Aligned_cols=341 Identities=21% Similarity=0.247 Sum_probs=253.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchh------hccCc--hhHHHHHHHHHHHh-hcCeeccCCc
Q psy6283 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSR------TLMGG--RSERNEFLLLHAFH-EKSYVLPDKQ 471 (1030)
Q Consensus 401 Gl~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~sr------tl~~g--r~~r~E~lLL~~~~-~~~yivPdk~ 471 (1030)
|+.+++.||++||.|+++|+.++..+....++++++|++..- ++..| ||.|+-..+|..+. +.|+++|...
T Consensus 533 ~RaRla~YCLkDA~LvlrLlkkl~~h~e~~eraRvT~~id~~~l~RG~v~fdG~vQQIKV~s~lL~kA~~~~~~~ia~~~ 612 (1545)
T PHA03334 533 ALARYLIYNLVDSELLIRIAKNLDPVIEFLNRLRATYNIDYVAHGRGVMNFCGFVQSTKSVEVPLLKARLRIGIFVATGR 612 (1545)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeecccceecccCccchhhHHHHHHHHHHHhcCccccccc
Confidence 489999999999999999999999888888999998877532 34455 88887755555554 7888887322
Q ss_pred cccCcCCCccccccccCCCCCCccccCceeecccccc-----ccceEEEeeccccChhHHHHhccccccccccCCCc--c
Q psy6283 472 YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGF-----YDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQD--S 544 (1030)
Q Consensus 472 ~~kk~~~~~d~~~~~~~~~~~~~~Y~GGlVleP~~Gl-----Y~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~--~ 544 (1030)
.... ...++. . ....+...+|+||+|++|++|| |++||++|||+|||||||++|||||+|++...+.. .
T Consensus 613 i~~s-~ilP~~-~--~~~~~~~~~YeGAtVLEP~~Gf~~~~~Y~~PVaVLDFASLYPSIIiahNLCYeTLV~~~c~~~~~ 688 (1545)
T PHA03334 613 IAES-LCMPEK-Y--ARDCRQKIKLKGGYVFAPLTGLTFAGPYQGTELTLDFASLYPSNMCDANISPEAIVDPDCTARVR 688 (1545)
T ss_pred cccc-ccCCcc-c--ccccccccccCCeEeecCCCCccccccCCCcEEEEEccccchHHHHHhCCCcccccCccchhhhc
Confidence 1100 000000 0 0011335689999999999999 67799999999999999999999999999765411 0
Q ss_pred --------cccc-c------------cCCCCCccccCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhcc
Q psy6283 545 --------DITT-L------------CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKL 603 (1030)
Q Consensus 545 --------~i~~-~------------~p~~p~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl 603 (1030)
.++. . .|..|......+++|.+|+.|++.|+++|+.||+ ..+|.++.+||.+|+|+|+
T Consensus 689 ~~~~~d~~k~p~gy~~~~~vy~V~~~~~~~P~~~rf~SiLp~LL~eLL~~RK~~Kk~MKk-~kDp~er~iLD~rQlALKV 767 (1545)
T PHA03334 689 GWVVFDWKKIDRGFGKATLMYTILRTKPEEPSWRRFTTYTTSSLNHYLSMRTEYKGAMKQ-AKDPKLKSYHNQLQNEMKI 767 (1545)
T ss_pred cccccccccCCcccCccccceeeccccCcCCCcceecchHHHHHHHHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHH
Confidence 0000 0 0113333345689999999999999999999998 5688899999999999999
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhh-hccceeEEecCcceeeecCCCCH-----------HHHH
Q psy6283 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE-NLNYEVIYGDTDSLMISCNVNDY-----------DSVF 671 (1030)
Q Consensus 604 ~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve-~~g~~VIYGDTDSI~V~~~~~d~-----------eea~ 671 (1030)
+|||+|||+|. .+|++||++||++|+.|+++++ +.|++|||||||||||+++..+. ++..
T Consensus 768 tANSvYGytG~--------~cA~lVTa~GRemI~~t~~~IE~e~G~~VIYGDTDSVfV~~p~~d~~~~~~d~v~~~~~~~ 839 (1545)
T PHA03334 768 CANSHYGVAPH--------ACQHLITTLGRHKIKLVEEFIKKEPGMTVNYGDTDSVMFQLPPDDAETYLEDTVTLEDEER 839 (1545)
T ss_pred HHHhhcCcchh--------HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCceEEEeCccccccccccccchhhhhh
Confidence 99999999875 4799999999999999999999 89999999999999999874321 0111
Q ss_pred HHH------------HHHHH---------------HHhc-cc----------c------e---------------e----
Q psy6283 672 KIG------------NQIKS---------------ECNK-LY----------K------Q---------------L---- 688 (1030)
Q Consensus 672 ~ig------------~~i~~---------------~Vn~-~~----------~------~---------------l---- 688 (1030)
.++ +.+.+ -||. +| . | +
T Consensus 840 ~~~~~~~~~~s~~~~~~~~~~k~~~~~~~v~~~L~~l~~~l~d~m~~~l~~~~~~~~~~p~~~~~~~~~~d~~~g~~~~~ 919 (1545)
T PHA03334 840 APLEYTLEEWSAEAVNHVTKAKTKREGETVQSILSDLNTVLYDDMIERLRYVDEGGSVEPFKDGEDWWVVDPLDGIWTYV 919 (1545)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHhheEeCCCCcEeeccCCCceeeecCCCceEEEe
Confidence 111 11111 1111 00 0 1 1
Q ss_pred ----------EEeecchhhhhhhcccccceEEeeeecCCCce-eeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccC
Q psy6283 689 ----------ELDIDGVYKYMLLLKKKKYAALSISKLSNGKM-ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755 (1030)
Q Consensus 689 ----------eLe~E~vf~~llll~KKrYa~l~~~~~~dG~~-~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~ 755 (1030)
+|++|..-.-.+.++||+|+..+|+.+ +|.+ .++++++|++.+++..+..++.+..++++.||.|.
T Consensus 920 ~~~f~~~~ItkL~yEn~stv~~~~aKK~Yi~~vhd~e-~~~~~~pKlK~~G~ea~KSStpga~r~~~~d~i~lI~~gg 996 (1545)
T PHA03334 920 RDPFSSELITKLCYENTSTVTCRLAKKMYIYTNHELN-NGPLGNTKIKMRGMQANKSSAAGATRRITNDFVNLIFKGG 996 (1545)
T ss_pred ccchhHhHHHHHhhhcchhhhhhhhhhhhheeeeecC-CcccccceeeeccccccccCCcHHHHHHHHHHHHHHhcCC
Confidence 233444444446679999999988854 5554 47899999999999999999999999999999987
No 22
>cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) epsilon has been proposed to play a role in elongation of the leading strand during DNA replication. Pol epsilon might also have a role in DNA repair. The structure of pol epsilon is characteristic of this family with the exception that it contains a large c-terminal domain with an unclear function. Phylogenetic analyses indicate that Pol epsilon is the ortholog to the archaeal Pol B3 rather than to Pol alpha, delta, or zeta. This might be because pol epsilon is ancestral to both archaea and eukaryotes DNA polymerases type B.
Probab=100.00 E-value=4.5e-48 Score=449.17 Aligned_cols=251 Identities=23% Similarity=0.284 Sum_probs=209.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhcCCC---------CCh-------HHHHhhHHHHHHhccccccccccCCCCCCCCCC
Q psy6283 558 VDTGILPSEIKKLVESRRQVKALMKQPN---------LSS-------DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFA 621 (1030)
Q Consensus 558 ~~~GIlP~iL~~Ll~~R~~vKk~mk~~~---------~~~-------~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~ 621 (1030)
.+.+++...++.+.++|..+|.+.|... .++ ..-.+||++|+|+|+++||||||+|+++||||+
T Consensus 219 rEn~Fyvdtvr~FrdrRy~yK~~~k~~k~~~~~~~~~~~~~~~~~a~~~~~lyDs~Q~A~KiIlNSfYGYlG~~gsRwYs 298 (621)
T cd05535 219 RENPFYVDTVRAFRDRRYEYKGLHKVWKKKLEAAKAAGDAAEIKEAKKMVVLYDSLQLAHKCILNSFYGYVMRKGSRWYS 298 (621)
T ss_pred ccCCcHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCccCcCCcccCC
Confidence 5788999999999999999999887431 121 233689999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhhhccceeEEecCcceeeecCCCCHHH---HHHHHHH---------HH-----HHHhcc
Q psy6283 622 QPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDS---VFKIGNQ---------IK-----SECNKL 684 (1030)
Q Consensus 622 ~~lA~~IT~~GR~iL~~tkelve~~g~~VIYGDTDSI~V~~~~~d~ee---a~~ig~~---------i~-----~~Vn~~ 684 (1030)
.++|++||++||+||+.|+++++.+|+.| |||||||||.+|....++ +.+.|.. +. ..+|..
T Consensus 299 ~emA~~VT~~GreIIk~tr~lvE~~G~~V-egDTDsI~~~lp~~~~e~~~~~~k~g~~~~~~~~~~~LN~~V~~~~tn~q 377 (621)
T cd05535 299 MEMAGIVCYTGANIIQMARELVEQIGRPL-ELDTDGIWCILPKSFPENFTFKTKNGKKVTISYPCVMLNHLVHKKFTNDQ 377 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCEE-EEecCeeEEEcCCCChHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 799999999987654443 2222222 22 233332
Q ss_pred c----------------ceeEEeecchhhhhhhc--------ccccceEEeeeecCCCceeeeceeeeeeeeeCChHHHH
Q psy6283 685 Y----------------KQLELDIDGVYKYMLLL--------KKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLA 740 (1030)
Q Consensus 685 ~----------------~~leLe~E~vf~~llll--------~KKrYa~l~~~~~~dG~~~~~~e~KGle~vRRD~~~l~ 740 (1030)
| .+|+||+||+|++|||+ .|||||++. .||.+ .++||++++|||||+|+
T Consensus 378 y~~l~~p~~~~y~i~se~~IefEvDG~Yk~mllpask~~~~~~KKRYAv~~----~dG~i---~elKGfEikRRd~~~La 450 (621)
T cd05535 378 YQELVDPSTGTYETRSENSIFFEVDGPYKAMILPASKEEGKLLKKRYAVFN----EDGSL---AELKGFEVKRRGELQLI 450 (621)
T ss_pred hhhccCcccccccccccceeEEEeccceeeeEcccccccccccccceEEEc----CCCCE---EEEeCceeeeCCHHHHH
Confidence 2 14999999999999995 699999873 46765 37999999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhC--CCcC----hhhhHHhhcccCCCCC---CcchHHHHH
Q psy6283 741 SEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDN--GFVP----LTLLEITKQLTKAPEG---GKVCITQIR 811 (1030)
Q Consensus 741 k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~--g~vp----l~~lvItk~LsK~p~~---~~~pHV~vA 811 (1030)
|++|.+|++.||.|+ +.+++++.|++.+..+.+.|.+ +.++ ++.++++++|+|+|++ ...|||++|
T Consensus 451 K~fQ~eV~e~iL~g~-----~~Eea~~~V~~v~~~~ld~L~~~~~~~~d~eLi~li~~~k~LsK~l~eY~~~ks~~V~~A 525 (621)
T cd05535 451 KIFQSEVFDAFLKGS-----TLEECYAAVAAVANYWLDVLDSKGENLDDEELFELISENRSMSKKLEEYGNQKSTSITTA 525 (621)
T ss_pred HHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHhhcccCCCHHHcCCCCCcHHHHH
Confidence 999999999999999 9999999999999998888888 5565 5557779999999998 368899999
Q ss_pred HHHHHcCCcc
Q psy6283 812 LSRNRRGRRR 821 (1030)
Q Consensus 812 ~r~~~~g~~~ 821 (1030)
+||++..|.-
T Consensus 526 kRl~e~lg~~ 535 (621)
T cd05535 526 KRLAEFLGDQ 535 (621)
T ss_pred HHHHHhhcCC
Confidence 9999865543
No 23
>smart00486 POLBc DNA polymerase type-B family. DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases
Probab=100.00 E-value=1e-45 Score=428.40 Aligned_cols=254 Identities=43% Similarity=0.681 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCcc
Q psy6283 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEE 481 (1030)
Q Consensus 402 l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d 481 (1030)
+..++.||++||.++++|+.+++++++..++++++|.++.+++.+|++.++++++++.++..|+++|++.......
T Consensus 199 ~~~~~~Y~~~D~~l~~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~g~~~~v~~~l~~~~~~~~~~~P~~~~~~~~~---- 274 (471)
T smart00486 199 RDELLEYCIQDAVLTLKLFNKLNVIPLIIELARIAGIPQRRTLYYGSQIRVESLLLREAKKNNYILPSKSLIDFKG---- 274 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCcCHHHHHhcCcHHHHHHHHHHHHhhCCEEeccchhccccc----
Confidence 6889999999999999999999999999999999999999999999999999999999999999999876421100
Q ss_pred ccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCcccc----------ccccC
Q psy6283 482 TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDI----------TTLCE 551 (1030)
Q Consensus 482 ~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i----------~~~~p 551 (1030)
.........+|.||+|++|.+|+|++||+++||+|||||||++|||||+|++......... ....|
T Consensus 275 ----~~~~~~~~~~y~gg~v~~p~~g~~~~~v~~lDf~SlYPsii~~~nl~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (471)
T smart00486 275 ----SEPELKKKAKYPGGKVLEPKKGFYDNPVLVLDFNSLYPSIIIAHNLCYSTLVGRGENSGELFLDVEDLLTIKYEKP 350 (471)
T ss_pred ----ccccccccccccccEEecCCCCcccCceEEeehhhccHHHHHHhCCCCcccccccccccccCCChhhcceeeecCC
Confidence 0011234578999999999999999999999999999999999999999998755310000 00001
Q ss_pred ---CCCCccccCCcchHHHHHHHHHHHHHHHHhcCCC-CChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHH
Q psy6283 552 ---YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN-LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627 (1030)
Q Consensus 552 ---~~p~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~-~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~ 627 (1030)
.+.......||+|.+|..|+..|..+|+.|++.. .+..++..||.+|.|+|+++||+||++|+.+++||+.++|++
T Consensus 351 ~~~~~~~~~~~~gil~~~l~~l~~~R~~~K~~~~~~~~~~~~~~~~~d~~q~a~K~~~Ns~yG~~g~~~~~~~~~~~a~~ 430 (471)
T smart00486 351 EGYHFVKKNIRKGILPKLLKKLLDKRKEIKKLMKKEKDESEELKKLLDSRQLALKLTANSVYGYLGFTNSRLYCKPLAAS 430 (471)
T ss_pred CcceeecCCCCCeehHHHHHHHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHHHhhhcccccccccccccCccHHHHHH
Confidence 1233344579999999999999999999998843 233489999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHhhhcc----ceeEEecCcceeeecC
Q psy6283 628 VTAKGREILLNTKSLVENLN----YEVIYGDTDSLMISCN 663 (1030)
Q Consensus 628 IT~~GR~iL~~tkelve~~g----~~VIYGDTDSI~V~~~ 663 (1030)
||+.||.+|+.|+.++++.| ++|||||||||||+++
T Consensus 431 iT~~gr~~l~~~~~~i~~~~~~~~~~viYgDTDSi~v~~~ 470 (471)
T smart00486 431 VTALGREILEKTKELIEKNGYPPGFKVIYGDTDSIFVTKP 470 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCceEEEecC
Confidence 99999999999999999987 8999999999999875
No 24
>KOG1798|consensus
Probab=99.98 E-value=2.6e-32 Score=329.17 Aligned_cols=399 Identities=20% Similarity=0.249 Sum_probs=304.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCcc
Q psy6283 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEE 481 (1030)
Q Consensus 402 l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d 481 (1030)
++.|+.|+..||..|+-|.++- +.|+...|+.|.+.+.+.+|.-|++..+|+||+-++...|.|+|+|......+.
T Consensus 429 PQ~lasYSVSDAVATYyLYMkY-VhPFIFsLctIIPl~PDevLRKGSGTLCE~LLmVeA~~~NIv~PNK~~e~~~~f--- 504 (2173)
T KOG1798|consen 429 PQTLASYSVSDAVATYYLYMKY-VHPFIFSLCTIIPLNPDEVLRKGSGTLCEALLMVEAYHANIVFPNKHTEDPEKF--- 504 (2173)
T ss_pred chhhhhcchHHHHHHHHHHHHH-hhhHHhhhhhccccChHHHHhcCcchHHHHHHHHHHHhcCeecCCcCccchhhh---
Confidence 7899999999999999999884 899999999999999999999999999999999999999999999875211000
Q ss_pred ccccccCCCCCCccccCceeecccccccc---------------------------------------------------
Q psy6283 482 TGEANKGKGRKKAAYSGGLVLEPKKGFYD--------------------------------------------------- 510 (1030)
Q Consensus 482 ~~~~~~~~~~~~~~Y~GGlVleP~~GlY~--------------------------------------------------- 510 (1030)
+ .+.--....|-||.|=.-+.|++.
T Consensus 505 --~--dGhlleSETYVGGHVE~LesGVFRSDip~~F~~dp~a~~eLi~~l~~~L~~~l~vE~k~~vd~v~nfeEv~~~I~ 580 (2173)
T KOG1798|consen 505 --Y--DGHLLESETYVGGHVECLESGVFRSDIPTEFRMDPSAYEELIDELGETLDFALTVENKVRVDEVTNFEEVKDEIL 580 (2173)
T ss_pred --c--cCeeeeeeeeechhhhhHhcccccccCcccccCCHHHHHHHHHHHHHHHHHHHhhhcccchhhhcCHHHHHHHHH
Confidence 0 011123467899998878888764
Q ss_pred --------------c-eEEEeeccccChhHHHHhccccccccccC----CCccc-----------------ccc------
Q psy6283 511 --------------K-FIILMDFNSLYPSIIQEYNICFTTIPVRM----LQDSD-----------------ITT------ 548 (1030)
Q Consensus 511 --------------~-~V~vLDFnSLYPSII~~~NIc~tTv~~~~----~d~~~-----------------i~~------ 548 (1030)
+ -|++||++||||+||....+.|.+|+... ||.+. +++
T Consensus 581 ~kL~~lrd~p~R~E~PlIYHLDVaaMYPNIilTNRLQP~siv~E~~C~~CDfN~P~ktC~Rkm~W~WRGe~~pa~r~EY~ 660 (2173)
T KOG1798|consen 581 EKLEELRDVPIREEGPLIYHLDVAAMYPNIILTNRLQPDSIVDEEICAACDFNKPGKTCKRKMEWAWRGEYFPAKRSEYH 660 (2173)
T ss_pred HHHHHhcCCCccccCCeEEEEehhhccCceeeecCCCCcccccHhhhccCCCCCCCcchhhhheeeeeeeEecCcchHHH
Confidence 3 38999999999999999999999987542 22110 000
Q ss_pred -------------ccCC--------CCC----------------------------------ccccCCcchHHHHHHHHH
Q psy6283 549 -------------LCEY--------LPE----------------------------------HQVDTGILPSEIKKLVES 573 (1030)
Q Consensus 549 -------------~~p~--------~p~----------------------------------~~~~~GIlP~iL~~Ll~~ 573 (1030)
..|. ++. ...+..+.-..++.+.++
T Consensus 661 ~I~~qlesE~f~~~~~~~~~k~F~~L~~~eq~~~~kkRl~~Ysrk~Y~rv~~~~i~eRet~ICqRENpFYVdTVrsFRDR 740 (2173)
T KOG1798|consen 661 RIKKQLESESFPAGAPFSPSKSFHELSREEQAAKLKKRLKDYSRKVYHRVKDTEIEERETTICQRENPFYVDTVRSFRDR 740 (2173)
T ss_pred HHHHHHHhccCCCCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHhHhcccchhhhhcchhhccCchhhhhHHHhhhh
Confidence 0000 000 024567888999999999
Q ss_pred HHHHHHHhcCC---------CCChH-------HHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHH
Q psy6283 574 RRQVKALMKQP---------NLSSD-------LLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637 (1030)
Q Consensus 574 R~~vKk~mk~~---------~~~~~-------~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~ 637 (1030)
|.++|.+.|.. ..+.. .-..||..|+|.|+++||+|||.-..+||||+.++|..||.+|..||+
T Consensus 741 RYeyK~L~K~wkg~ls~a~~sg~~a~i~eak~mvVlYdSLQLAHKcILNSFYGYVMRKGsRWYSMEMAGIvc~TGAnIIq 820 (2173)
T KOG1798|consen 741 RYEYKGLHKVWKGKLSAAKASGDLARIKEAKKMVVLYDSLQLAHKCILNSFYGYVMRKGSRWYSMEMAGIVCLTGANIIQ 820 (2173)
T ss_pred hhHHHHHHHHHHHHHhhhhccCchhhHHhhhheEEehHhHHHHHHHHHhhhhhhhhccccchheeehhheeeccchHHHH
Confidence 99999987743 11111 124799999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccceeEEecCcceeeecCCCCHHH-------HH--------H-HHHHHHH-HHhcc-----------c----
Q psy6283 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDS-------VF--------K-IGNQIKS-ECNKL-----------Y---- 685 (1030)
Q Consensus 638 ~tkelve~~g~~VIYGDTDSI~V~~~~~d~ee-------a~--------~-ig~~i~~-~Vn~~-----------~---- 685 (1030)
.|++++|..|- ..--|||+||+-+|..-++. .. . +..-+.+ .-|.+ |
T Consensus 821 ~AR~lVEriGr-PLELDTDGIWCilP~SFPEnf~Fk~~n~kkvtiSYPc~mLN~~V~e~fTN~QYq~L~dp~~~~Y~t~S 899 (2173)
T KOG1798|consen 821 MARELVERIGR-PLELDTDGIWCILPGSFPENFTFKLKNGKKVTISYPCVMLNHLVHEGFTNHQYQELVDPVRLTYVTRS 899 (2173)
T ss_pred HHHHHHHHhCC-CeeccCCceEEeccCCCccceEEEecCCcEEEEechHHHHHHHHHhccchhhHHHhcCcccceeeecc
Confidence 99999999885 45689999999877542220 00 0 1111111 11222 2
Q ss_pred -ceeEEeecchhhhhhhcc--------cccceEEeeeecCCCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCC
Q psy6283 686 -KQLELDIDGVYKYMLLLK--------KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756 (1030)
Q Consensus 686 -~~leLe~E~vf~~llll~--------KKrYa~l~~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~ 756 (1030)
..|.+|+||.|+.|+|.+ |||||-+. .||.+. ++||+++.||.--+|+|.+|..+++.+|.|.
T Consensus 900 EnSIfFEVDGPYkAMILPaSkEEGk~lKKRYAVFN----~DGsLA---ELKGFEiKRRGEL~lIK~FQs~lF~~FL~Gs- 971 (2173)
T KOG1798|consen 900 ENSIFFEVDGPYKAMILPASKEEGKLLKKRYAVFN----EDGSLA---ELKGFEIKRRGELKLIKVFQSELFKVFLKGS- 971 (2173)
T ss_pred cceEEEEecCceeEEeeccchhhhhhhhheeEEec----CCCchh---hhcCceeeecchhhHHHHHHHHHHHHHhCCC-
Confidence 258899999999999974 89999883 588874 8999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhCCC---cC----hhhhHHhhcccCCCCC---CcchHHHHHHHHHHcCCccc
Q psy6283 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGF---VP----LTLLEITKQLTKAPEG---GKVCITQIRLSRNRRGRRRR 822 (1030)
Q Consensus 757 ~~~~~~e~~v~~I~~~l~~~~~~l~~g~---vp----l~~lvItk~LsK~p~~---~~~pHV~vA~r~~~~g~~~~ 822 (1030)
+.|++.+.|..... .|-+|..+. ++ ++.+.-+++++|...+ .....+..|+||...-|..+
T Consensus 972 ----tLEEcY~aVA~Vad-~WLDiL~s~G~~l~D~eL~elISEnrSMSk~L~dYg~QKStsitTAkRLaeFLGd~M 1042 (2173)
T KOG1798|consen 972 ----TLEECYSAVAAVAD-RWLDILDSHGADLTDSELLELISENRSMSKKLEDYGGQKSTSITTAKRLAEFLGDDM 1042 (2173)
T ss_pred ----cHHHHHHHHHHHHH-HHHHHHHhccCCCCcHHHHHHHhhchhhhhhHHHhccccchHHHHHHHHHHHhchhh
Confidence 99999988876654 444454322 22 4455567888888877 44567889999988766544
No 25
>KOG3236|consensus
Probab=99.98 E-value=1.7e-33 Score=284.26 Aligned_cols=108 Identities=46% Similarity=0.850 Sum_probs=100.7
Q ss_pred CeEEeeeccCccCCCCccccHHHHHHHHHhHHHhhhhhhhhhcCCCCCceeeEEeecchhhHHHHHHhhhhHhhcCCCcc
Q psy6283 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWAGAEVILTRFLDLWVGARGAE 80 (1030)
Q Consensus 1 ml~latf~p~~~~~~~~~~~~~e~~k~~~~~~dl~g~y~~l~~~~~~~~~k~~~~glgW~~a~~~~~~~~~lw~garg~e 80 (1030)
||+||||||+.+. +.||+++|+|||++|++||+|++|+||+++|++|+|++++||||||||+|++|++||||||||+|
T Consensus 50 lL~lAtff~~~~s--~~f~~~~e~LK~s~di~dl~Gl~li~s~~~~~~~~k~~~~gLGWafA~sVlhRlipLWVGARG~e 127 (225)
T KOG3236|consen 50 MLILATFFPALES--GGFDFVPEFLKCSADIADLIGLHLIMSRFPGKGEVKFVVAGLGWAFAESVLHRLIPLWVGARGTE 127 (225)
T ss_pred HHHHHHhhhcccc--cccchHHHHHHhhhhHHHHhhHHHHHhcCCCCCceeEEEeechHHHHHHHHHhhhHhhccccCce
Confidence 7899999999876 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHhhhccchhhhhhccHHHHHHHHHH
Q psy6283 81 FDWKYIQNSLDSNICLIDKTNKFAAFQKLKD 111 (1030)
Q Consensus 81 F~w~yi~~~~~sn~slv~~~~~~~al~~l~~ 111 (1030)
|+|+|||+|||||++|+- .-+.+||--|-.
T Consensus 128 FtW~yVl~~LesN~~Lv~-~I~la~l~w~it 157 (225)
T KOG3236|consen 128 FTWDYVLQSLESNANLVQ-IISLAALGWMIT 157 (225)
T ss_pred eEHHHHHHHhccCccHhh-hhHHHHHHHHhe
Confidence 999999999999999998 445666655533
No 26
>PF09767 DUF2053: Predicted membrane protein (DUF2053); InterPro: IPR019164 This family of proteins is conserved from plants to humans. The function is unknown although some annotation suggests that it is a transmembrane protein.
Probab=99.97 E-value=2.3e-32 Score=275.58 Aligned_cols=96 Identities=61% Similarity=1.068 Sum_probs=93.9
Q ss_pred CeEEeeeccCccCCCCccccHHHHHHHHHhHHHhhhhhhhhhc--CCCCCceeeEEeecchhhHHHHHHhhhhHhhcCCC
Q psy6283 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSS--IPGKGHAKILTAGVGWAGAEVILTRFLDLWVGARG 78 (1030)
Q Consensus 1 ml~latf~p~~~~~~~~~~~~~e~~k~~~~~~dl~g~y~~l~~--~~~~~~~k~~~~glgW~~a~~~~~~~~~lw~garg 78 (1030)
||+||||||+++. ++||+++||+|+++|++||+||||+|++ .+|++|+||+++|||||+||+|+||++||||||||
T Consensus 49 ml~lATf~P~~~~--~~~~~~~eilk~~~d~~Dl~gi~~il~~~~~~~~~~~ril~~glGWa~ae~l~tr~~plwvgarg 126 (159)
T PF09767_consen 49 MLLLATFFPSSDS--STFDFIQEILKSSVDLIDLIGIYLILSSKANAGKGESRILAIGLGWAFAESLLTRFLPLWVGARG 126 (159)
T ss_pred HHHHHHcCCcccc--ccchHHHHHHHHHHHHHHHHHHHHHHhCcccCCCcceeEEEEeeeeehHHHHHHHHHHHHhcccc
Confidence 7899999999887 6899999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cccchHHHHhhhccchhhhh
Q psy6283 79 AEFDWKYIQNSLDSNICLID 98 (1030)
Q Consensus 79 ~eF~w~yi~~~~~sn~slv~ 98 (1030)
+||||+|||+|++||++++.
T Consensus 127 ~eF~wkyi~~sl~SNi~li~ 146 (159)
T PF09767_consen 127 SEFDWKYIQMSLESNISLIQ 146 (159)
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 99999999999999999997
No 27
>PHA02523 43B DNA polymerase subunit B; Provisional
Probab=99.97 E-value=2.5e-31 Score=292.42 Aligned_cols=217 Identities=19% Similarity=0.238 Sum_probs=171.6
Q ss_pred HhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHH--------HHHhhhccce-eEEecCcceeeec
Q psy6283 592 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNT--------KSLVENLNYE-VIYGDTDSLMISC 662 (1030)
Q Consensus 592 ~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~t--------kelve~~g~~-VIYGDTDSI~V~~ 662 (1030)
+..+.+|.|+|+++||+|||||+.++|||++++|++||++||++|+.+ .++++..|+. |||||||||||++
T Consensus 37 a~~~~~q~AiKIlmNSfYGylG~~~~R~yd~e~A~aVT~~Gre~Ik~i~~~~ney~~~l~~t~G~~~VIYgDTDSifv~~ 116 (391)
T PHA02523 37 QKRNTNQLNRKILINSLYGALGNNWFRYFDLRNAEAITTYGQLAIRWIERKLNEYINELVKTTGVDYVCYIDTDSVYLNM 116 (391)
T ss_pred HHHhcchHHHHHHHHhhhhhhcCCCceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcceEEEecCCeeEEEe
Confidence 456778999999999999999999999999999999999999999944 4466678996 9999999999998
Q ss_pred CCCCHHHHH--------------H-HHHHHHHHHhccc-----------ceeEEeecchhhhh--------hhcccccce
Q psy6283 663 NVNDYDSVF--------------K-IGNQIKSECNKLY-----------KQLELDIDGVYKYM--------LLLKKKKYA 708 (1030)
Q Consensus 663 ~~~d~eea~--------------~-ig~~i~~~Vn~~~-----------~~leLe~E~vf~~l--------lll~KKrYa 708 (1030)
+...-.... + ...++...||..| ..+.+++|++|.++ ++.+|||||
T Consensus 117 ~~~v~~~~~~~~~d~~~~vd~ldk~~~~~iE~~In~sY~el~eymna~~h~~~m~rE~ia~~f~~s~g~~gfw~~KKRYA 196 (391)
T PHA02523 117 EAVVNRVGIDKFRDTNHLIDFLDNLGSKKLEPFIDDSYKELEEYMNHDHHLLLMDREAIFGAPLGSDGIGGFWTGKKRYA 196 (391)
T ss_pred cchHHHHhhhhhccchhhhHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhhhhHHHhccccccccccchhhhhhhhhh
Confidence 642100000 0 1234445555443 36889999999996 778999999
Q ss_pred EEeeeecCCCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChh
Q psy6283 709 ALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLT 788 (1030)
Q Consensus 709 ~l~~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~ 788 (1030)
+.+|++++...-.+++++.|++.+|+|.|++++.++.++++.||.+. . +.|++|+.++....+ .+|++
T Consensus 197 ~~v~d~EG~r~~epklkI~G~E~qrSstp~~~~~~~ke~i~~Il~~~-----e-----e~iqeyi~~~~~ey~--~~~~~ 264 (391)
T PHA02523 197 LNVYDMEGTRYAEPHLKIMGLETQRSSTPLACQKSLKESIRRLLQEG-----E-----SSLQDYFKEFKDEFK--NIPYQ 264 (391)
T ss_pred heeeeccCccccCCccceeeeeecccCchHHHHHHHHHHHHHHHhCC-----h-----HHHHHHHHHHHHHHh--cCCHH
Confidence 99999764432236899999999999999999999999999999976 2 236777777777775 89999
Q ss_pred hhHH---hhcccCCCCC------CcchHHHHHHHHHHcCCc
Q psy6283 789 LLEI---TKQLTKAPEG------GKVCITQIRLSRNRRGRR 820 (1030)
Q Consensus 789 ~lvI---tk~LsK~p~~------~~~pHV~vA~r~~~~g~~ 820 (1030)
+..+ ...+.|..+. ....||..|+-.|..-+.
T Consensus 265 ~Ia~~s~~~~I~K~~d~~~~~~kg~p~hvrGal~~N~~~~~ 305 (391)
T PHA02523 265 DVAAVSSANNIGKNGDALGFPIKGTPYHVKGVLAYNRIAKT 305 (391)
T ss_pred HhcccCCCCchhhcccccCCCCCCCchhhHHHHHHHHHhcc
Confidence 9998 4677777666 345799999877765444
No 28
>PHA02524 43A DNA polymerase subunit A; Provisional
Probab=99.95 E-value=2.2e-28 Score=284.19 Aligned_cols=220 Identities=19% Similarity=0.281 Sum_probs=156.7
Q ss_pred CceeeecccCchhhhhHHhhhhccCCeEEEecCccCC--CCcCccccceEeecchhhhcccCe----EEE---EccHHHH
Q psy6283 335 DTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKF--PSRISWCKYEVQCNQMEKIRSKQG----LIY---LIGIVEF 405 (1030)
Q Consensus 335 ~tfs~vfG~~~~~~E~f~l~~~i~Gp~wl~i~~~~~~--~~~~s~ck~e~~~~~~~~l~~~~~----viv---r~Gl~~l 405 (1030)
...+..||.++ ...|.|..-|++-..-.. ..+++.++++-+.. ..++..+. .|. .-...+|
T Consensus 237 ~~s~~~~G~~~--------~~~I~GRv~iDl~~l~kk~s~~~l~sYsL~~Vs~--~~Lg~~K~d~~~~I~~l~~~d~~rl 306 (498)
T PHA02524 237 KTITNLYGEKI--------IYKIHGIALMDYMDVFKKFSFTPMPDYKLGNVGY--REVKADKLDYEGPINKFRKADHQRY 306 (498)
T ss_pred ccceeecCcee--------EEEEeeEEEeEHHHHHHHhhhccCCCCCHHHHHH--HhcCCccccchhhHHHHhcCchHHH
Confidence 34456777643 137888887777433221 12444444433221 11211110 001 1126789
Q ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCcccccc
Q psy6283 406 IKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEA 485 (1030)
Q Consensus 406 v~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d~~~~ 485 (1030)
+.||++||.|++.|+.++.+++++.++|+++|+++.+++ ++...++++|+++++++|+++|+....
T Consensus 307 a~YclkDa~L~~~L~~~~~ll~~~~~larvtglpl~~v~--~qikv~~~lllr~~~~~g~viP~~~~~------------ 372 (498)
T PHA02524 307 VDYCVRDTDIILLIDGRRCFIDLILSLSYYAKIRFDDVL--GTIKVWDSIIFNSLVESNVVIPAMKAS------------ 372 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhc--cHHHHHHHHHHHHHHHCCEecCCCCCC------------
Confidence 999999999999998889999999999999999999986 466678899999999999999975421
Q ss_pred ccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCC--C-ccc---c---c----cccCC
Q psy6283 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML--Q-DSD---I---T----TLCEY 552 (1030)
Q Consensus 486 ~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~--d-~~~---i---~----~~~p~ 552 (1030)
...+|+||+|++|.||+|++ |++|||+|||||||++|||||+|+++... . ... + + ...|.
T Consensus 373 ------~~~~Y~GA~V~eP~~GlY~~-VivLDFaSLYPSII~a~NIsPeTl~~~~~~~~~~~~~~~~~~~~~~~~~~~P~ 445 (498)
T PHA02524 373 ------PKQSFPGAYVKEPVPGGYRY-GLSFDLTSLYPSILRLLNISPEMIAGMFSPARLEDYINKVAPKPSDQFSCAPN 445 (498)
T ss_pred ------CCCccCCeEEecCCCccccC-eEEEEccccCHHHHHHhCCCHHHhhccccccchhhhccccCCCCCcceEECCC
Confidence 13479999999999999998 57899999999999999999999975421 0 000 0 0 01121
Q ss_pred -CCCccccCCcchHHHHHHHHHHHHHHHHhcCCC
Q psy6283 553 -LPEHQVDTGILPSEIKKLVESRRQVKALMKQPN 585 (1030)
Q Consensus 553 -~p~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~ 585 (1030)
.-..+..+||||.+|+.|++.|+++|+.|+++.
T Consensus 446 G~~F~K~~~GilP~iLe~Ll~~RK~~Kk~M~~a~ 479 (498)
T PHA02524 446 GMMYKKGVVGVLPNETEKVFLQRKSEKKMMLAAI 479 (498)
T ss_pred CCEEecCCCcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 001236799999999999999999999999853
No 29
>PF12254 DNA_pol_alpha_N: DNA polymerase alpha subunit p180 N terminal; InterPro: IPR024647 This entry represents the N-terminal domain of DNA polymerase alpha catalytic subunit (the DNA polymerase alpha complex is composed of four subunits). This domain is approximately 70 amino acids in length and it contains a specific labile site [].
Probab=99.87 E-value=7.1e-23 Score=177.90 Aligned_cols=64 Identities=53% Similarity=0.927 Sum_probs=60.0
Q ss_pred HHHHHHHhhcCcce--eeeeccccccccccChHHHHHHHHhh-ccCCeEEeCCCCcccccccccccc
Q psy6283 106 FQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVEDGREIFDD 169 (1030)
Q Consensus 106 l~~l~~~~~~g~~~--~~~v~~~~~vy~~vde~~y~~~v~~r-~~dd~v~dd~g~gy~~~gre~~d~ 169 (1030)
|++||+||++|.++ .|+|++.++|||+|||++|+++|++| |+|||||||||.||||||+|+|||
T Consensus 1 L~~Lk~~R~~g~~~~~~~ev~e~~~IYdeVdE~eY~~~v~~R~~~dDFIvDDdG~GYvD~G~e~wdd 67 (67)
T PF12254_consen 1 LEKLKAAREGGKKRTDEYEVEEEEDIYDEVDEEEYRKLVRKRLQEDDFIVDDDGEGYVDDGREEWDD 67 (67)
T ss_pred CHHHHHHHhcCCccccchhhhcccccceeeCHHHHHHHHHHHHhcCCceEcCCCCcccccChhhccC
Confidence 68999999988776 68999999999999999999999999 589999999999999999999975
No 30
>PHA02563 DNA polymerase; Provisional
Probab=99.76 E-value=2.1e-18 Score=206.22 Aligned_cols=206 Identities=23% Similarity=0.305 Sum_probs=137.6
Q ss_pred CccccCceee---ccccccccceEEEeeccccChhHHHHhccccccccccCCCcc----------cc-c------cccCC
Q psy6283 493 KAAYSGGLVL---EPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS----------DI-T------TLCEY 552 (1030)
Q Consensus 493 ~~~Y~GGlVl---eP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~----------~i-~------~~~p~ 552 (1030)
..+|.||.|. .+.+|++++ +.++|+||||||+|..+++|+.+-........ .+ . ..+|.
T Consensus 235 r~sY~GGr~~~~~~~~~~~~~~-~~~yDvnSlYPsaM~~~~~P~g~p~~~~~k~~~~~~~~~~i~~~~~~f~~~ev~~p~ 313 (630)
T PHA02563 235 RKFYRGGRTWYNPKYIGKLIEE-GYVYDVNSLYPYVMYNAKLPYGEPFYEKGKPAELKPDPLYIYNYGALFKLKKGYVPD 313 (630)
T ss_pred HHheeCceeecccccccccccc-ccccccccccHHHHhhccCCCCCceeeccCcccccccccccccceEEEEEEEccCCC
Confidence 3689999998 888999987 67999999999999999998865211110000 00 0 00110
Q ss_pred -----------------CCC-----------------------------------------ccccCCcchHHHHHHHHHH
Q psy6283 553 -----------------LPE-----------------------------------------HQVDTGILPSEIKKLVESR 574 (1030)
Q Consensus 553 -----------------~p~-----------------------------------------~~~~~GIlP~iL~~Ll~~R 574 (1030)
+|. -....+++.+.+..|.+.|
T Consensus 314 ~~~i~Ik~~~~~~~~~i~p~g~~~g~~~~~E~~~~~~~~i~le~~ik~y~~~~i~v~~Gy~fe~~~~~FkeyI~~lY~iK 393 (630)
T PHA02563 314 DMLIQIKSNLDFNGRLVLKVGIVKYVNSGNEYVDLNLNNLDLELEITHYDAFNEEVESGVVFECETGLFRDFIDHFYEIK 393 (630)
T ss_pred ccccceeccccCCCceeeecccEeeEecCceEEEEEeceEEHHHhhhccceeEEEEEEEEEEcccCchHHHHHHHHHHHH
Confidence 110 0012466777777777777
Q ss_pred HHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCC---CC--------------------CC-HHHHHHHHH
Q psy6283 575 RQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS---RF--------------------FA-QPLAALVTA 630 (1030)
Q Consensus 575 ~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~s---rf--------------------y~-~~lA~~IT~ 630 (1030)
.+.|+.- + .+...|+++||.||-+|..-. .+ +. +++|++||+
T Consensus 394 ~~~K~~~------~--------~~~i~KLlLNSLYGKfg~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~yv~iAa~ITa 459 (630)
T PHA02563 394 TNSKGAK------K--------QNMLAKLMLNSLYGKFALNPDNTGKVPYLDDNGRLDLISNGEENKEPNYIPIAAFITA 459 (630)
T ss_pred hccccCc------c--------HHHHHHHHHhcccchhhcCccccCceeeecccceeeeecCCccccccccchHHHHHHH
Confidence 7755421 1 236899999999999986433 11 11 679999999
Q ss_pred HhHHHHHHHHHHhhhccceeEEecCcceeeecCCCCH-HHHHHHHHHHHHHHhcccceeEEeecchhhhhhhcccccceE
Q psy6283 631 KGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDY-DSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAA 709 (1030)
Q Consensus 631 ~GR~iL~~tkelve~~g~~VIYGDTDSI~V~~~~~d~-eea~~ig~~i~~~Vn~~~~~leLe~E~vf~~llll~KKrYa~ 709 (1030)
.||.+|..++..+++. |+|||||||||....... .+-+-.+ .++. .+++|.++...+++++|.|+.
T Consensus 460 ~aR~~m~~~~~~~~~~---v~Y~DTDSi~v~~~~~~~L~~~~i~~----~eLG------k~k~E~~~~~~~fl~~K~Y~l 526 (630)
T PHA02563 460 RARSNLLSALQYLYEK---FIYCDTDSIHLEGAETPKLPKDMIDP----KELG------KWDHEGEFIKAKYLRPKKYAL 526 (630)
T ss_pred HHHHHHHHHHHHhhcc---EEEECCceEEEecCccccCchhhCCh----hHhc------ceeccceeeEEEEEeccEEEE
Confidence 9999999999988765 999999999998654321 1100001 1111 236788999999999999965
Q ss_pred EeeeecCCCceeeeceeeeee
Q psy6283 710 LSISKLSNGKMICSQEIKGVD 730 (1030)
Q Consensus 710 l~~~~~~dG~~~~~~e~KGle 730 (1030)
+. .+.+|.+ .+.+||+.
T Consensus 527 ~~--~d~~~~i--~ik~KGi~ 543 (630)
T PHA02563 527 YA--EEVNGKL--KIKCAGMP 543 (630)
T ss_pred Ee--cCCCceE--EEEeCCCC
Confidence 54 2345665 36789984
No 31
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included.; InterPro: IPR006133 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known. However, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold [].; GO: 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 4AHC_A 3A2F_A 2JGU_A 4AIL_C 1NOY_A 1NOZ_B 3IAY_A 1WNS_A 3K5O_A ....
Probab=99.36 E-value=8.5e-14 Score=155.26 Aligned_cols=136 Identities=27% Similarity=0.516 Sum_probs=109.5
Q ss_pred CceeEEEEEEcceeeeEEEecCCCCCCCCCcccHHHHHHHHHH-HHHhcCCcceEEeeeeeccccCCCCCCCCccEEEEE
Q psy6283 242 NSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVR 320 (1030)
Q Consensus 242 ~~~~Sccv~v~~~~R~~~~lpr~~~~~~~~~~~~~~v~~e~~~-~~~~~~i~~~~~k~v~~~yaf~~~~vp~~~~~lkv~ 320 (1030)
..+.||||+|.|+.+.+|++|++.. ...++.+.+.. +..+.++..+++++|+|+|+|+..+.|... ||+|.
T Consensus 3 ~~g~svcv~v~~f~pyfYv~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~V~r~~~~~~y~~~~~~-~lkV~ 74 (325)
T PF03104_consen 3 EDGKSVCVRVHGFRPYFYVLPPESD-------SPKDLEQFIEQLLRKKFKIDVFKIEKVKRKKSFYGYDGKEEP-FLKVY 74 (325)
T ss_dssp CTSEEEEEEEST--EEEEEEESSGG-------GHHHHTTHEEHHEETTEEEEEEEEEEEEEEEESSEETTEEEE-EEEEE
T ss_pred CCCCEEEEEEcCCCEEEEEECCCCc-------cHHHHHHHHHHHhhhccCCceEEEEEEEeeeeeccCCCCCce-EEEEE
Confidence 3579999999999999999999843 22233333222 566788999999999999999887777666 99999
Q ss_pred eccCCC--CCCCCCcCCceeeecccCchhhhhHHhhhhccCCeEEEecCc-cCCCCcCccccceEeecc
Q psy6283 321 YSAKCP--ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA-EKFPSRISWCKYEVQCNQ 386 (1030)
Q Consensus 321 y~~~~p--~~~~~~~g~tfs~vfG~~~~~~E~f~l~~~i~Gp~wl~i~~~-~~~~~~~s~ck~e~~~~~ 386 (1030)
|+...+ .++..+.+ ++.++|+++.+.+++|+++++|+||||+.+.+. .......|||+.|+.+..
T Consensus 75 ~~~~~~~~~~~~~l~~-~~~~~~e~~i~~~~rfl~~~~i~~~~wi~i~~~~~~~~~~~s~~~~e~~~~~ 142 (325)
T PF03104_consen 75 FSSPRDVRKLRDNLKK-TFFKVYEADIPPLERFLIDRNIRGPGWIKIKNPSKPVKDRVSWCDIEFSVDY 142 (325)
T ss_dssp ESSTTHHHHHHHHHHH-TEEEEESTSS-HHHHHHHHTTHCTTEEEEEETTECHHHHHTCTCSCECECCH
T ss_pred ECcHHHHHHHHHHHHh-ccchhhccCCCHHHheeeecCcccceeeeccccccccccccccccccccccc
Confidence 998877 66677777 999999999999999999999999999999998 344577899999998863
No 32
>TIGR00592 pol2 DNA polymerase (pol2). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.17 E-value=3.7e-13 Score=173.54 Aligned_cols=191 Identities=21% Similarity=0.291 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCcccc
Q psy6283 404 EFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETG 483 (1030)
Q Consensus 404 ~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d~~ 483 (1030)
+++.||.+|+.+++.|+.++..++. ..+.+.|.+++.+...+++..+.+++.+.+...+++.|..+....
T Consensus 407 ~~v~y~~~~lkv~y~l~~~~~~l~~--l~~~~~g~~~~~vf~~n~g~~erfll~rki~gp~WL~i~~p~~~~-------- 476 (1172)
T TIGR00592 407 IDAPYSSEYLEVTYELGKEFAPMEA--LPSDLKGQTFWHVFGSNTGNLERFLLLRKIKGPCWLAVKGPDELE-------- 476 (1172)
T ss_pred cCCcCCcceEEEEEccCccchhhhh--hhhhccCCcchheeccCHHHHHHHHhcCCCCCCceEEeCCCcccC--------
Confidence 4789999999999998877544443 345778999999888888888889998888888888876543210
Q ss_pred ccccCCCCCCccccCceeecc--ccccccc--eEEEeecc--ccChhHHHHhccccccccccCCC-----ccc-cc-ccc
Q psy6283 484 EANKGKGRKKAAYSGGLVLEP--KKGFYDK--FIILMDFN--SLYPSIIQEYNICFTTIPVRMLQ-----DSD-IT-TLC 550 (1030)
Q Consensus 484 ~~~~~~~~~~~~Y~GGlVleP--~~GlY~~--~V~vLDFn--SLYPSII~~~NIc~tTv~~~~~d-----~~~-i~-~~~ 550 (1030)
. .......|+|+.|++| .+|+|.+ ||++|||+ |||||||+++|||++|++..... +.. .. ..|
T Consensus 477 ---~-~~~S~c~yEga~v~~p~v~~g~~~~~pPl~vLdFsi~SlyPsi~~~~nl~iS~~v~~~~~~d~~~~~~~~~~~~~ 552 (1172)
T TIGR00592 477 ---Y-PRRSWCKYEGGYVKPPNVEKGLDKTPPPLVVLDFSMKSLNPSIIRNEIVSIPDTLHREFALDKPPPEPPYDVHPC 552 (1172)
T ss_pred ---c-CCccccceEEEEecCccccccccCCCCCeEEEEeeeEEecCccccCceEEEEEEEeecccccCCCCCCccceEEE
Confidence 0 0122467999999999 9999998 89999999 99999999999997766543210 111 10 001
Q ss_pred ----C---CCCC--ccccCCcchHHHHHHHHHHHHHHHHhcCC-CCChHHHHhhHHHHHHhccccccc
Q psy6283 551 ----E---YLPE--HQVDTGILPSEIKKLVESRRQVKALMKQP-NLSSDLLMQYDIRQKALKLTANSM 608 (1030)
Q Consensus 551 ----p---~~p~--~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~-~~~~~~~~~~d~rQ~AlKl~aNS~ 608 (1030)
| .||. .....|++|..|..+.+.|..+++.|+.. ..||+....||+.|.|||+++|=+
T Consensus 553 ~~~~~~~~~~p~~~~~~~~~~~~~~L~~~~sEr~lL~~fl~~~~~~DPDii~g~n~~qfdlkvl~nR~ 620 (1172)
T TIGR00592 553 VGTRPKDCSFPLDLKGEFPGKKPSLVEDLATERALIKKFMAKVKKIDPDEIVGHDYQQRALKVLANRI 620 (1172)
T ss_pred EEEccCCCCCCchhhhhhhccCCcEEEEecCHHHHHHHHHHHHHhcCCCEEEEEcccCccHHHHHHHH
Confidence 1 0121 12467999999999999999999999864 358999999999999999999933
No 33
>PF08490 DUF1744: Domain of unknown function (DUF1744); InterPro: IPR013697 This domain is found on the catalytic subunit of DNA polymerase epsilon. It is found C-terminal to IPR006133 from INTERPRO and IPR006134 from INTERPRO. ; GO: 0003887 DNA-directed DNA polymerase activity, 0008270 zinc ion binding, 0006260 DNA replication, 0005634 nucleus
Probab=98.46 E-value=3.9e-06 Score=97.57 Aligned_cols=263 Identities=14% Similarity=0.128 Sum_probs=170.5
Q ss_pred hcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCC-CccccccccCCCCCCccccCcee
Q psy6283 423 LNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE-GEETGEANKGKGRKKAAYSGGLV 501 (1030)
Q Consensus 423 l~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~-~~d~~~~~~~~~~~~~~Y~GGlV 501 (1030)
..+|...+++++.+++|+..+-......-..-+.-+.+++.|+|+=..+.. .|.. ..+.+ +. ........-..+
T Consensus 119 ~~wl~~~i~laRY~~IPlgNl~~D~~~f~~Di~yAR~L~~~~~VLW~S~~~-~PDlGG~e~D--d~--~~~~~~~~~~~~ 193 (396)
T PF08490_consen 119 GSWLSERIELARYAHIPLGNLPSDNPLFLIDIFYARRLRKNNHVLWWSPSP-RPDLGGKEED--DN--RLLWDMDELESP 193 (396)
T ss_pred HHHHHHHHHHHHHcCCCcccCCcchHHHHHHHHHHHHHHHCCeEEeCCCCC-CCCCCcchhh--hh--cccccccccCce
Confidence 457778889999999998877555555567778888889999998443321 1110 00000 00 000011111223
Q ss_pred eccccccccceEEEeecccc-ChhHHHHhccccccccccCC---Ccccc----cc---ccCCCCCccccCCcchHHHHHH
Q psy6283 502 LEPKKGFYDKFIILMDFNSL-YPSIIQEYNICFTTIPVRML---QDSDI----TT---LCEYLPEHQVDTGILPSEIKKL 570 (1030)
Q Consensus 502 leP~~GlY~~~V~vLDFnSL-YPSII~~~NIc~tTv~~~~~---d~~~i----~~---~~p~~p~~~~~~GIlP~iL~~L 570 (1030)
.--.||+|.+..+.||+..| .-+|.++.-|.= +.+... ..+.. .+ ....+ ....+-+..+.-
T Consensus 194 ~in~pG~Y~~vcvEl~i~~LavnaiL~S~~i~e--~EG~~~~~~~~~~~~~~~~~~~~~~~~~----~e~~~~~~~f~i- 266 (396)
T PF08490_consen 194 EINNPGAYRSVCVELDISNLAVNAILQSSLINE--LEGSDSAGFNFDTASDASNGSANSSSSY----DESAFCSAAFRI- 266 (396)
T ss_pred EEECCCccceEEEEEEecceeHHHHHHHhHHhh--hcCCcccccccccccccccccccccccc----ccccccHHHHHH-
Confidence 33578999998899999998 555555444321 000000 00000 00 00000 111222222222
Q ss_pred HHHHHHHHHHhcCCC-CChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhccce
Q psy6283 571 VESRRQVKALMKQPN-LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYE 649 (1030)
Q Consensus 571 l~~R~~vKk~mk~~~-~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~g~~ 649 (1030)
.|..+|..+.... .++ ..|. +++.+|-.+-.+.|.+|++.+...|-..=+..+.....-..++|.+
T Consensus 267 --Lr~mv~~w~~d~~~~n~----~AD~-------ll~~f~rWl~sp~S~LyDPaL~~~v~~LmkK~flqLl~Ef~rlG~~ 333 (396)
T PF08490_consen 267 --LRSMVKSWLRDALKGNS----FADS-------LLQHFYRWLSSPSSLLYDPALHRMVHNLMKKVFLQLLAEFRRLGSK 333 (396)
T ss_pred --HHHHHHHHHHHHhcCCc----cHHH-------HHHHHHHHHcCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 2334444444310 111 1111 2577899999999999999999999999888888887777899999
Q ss_pred eEEecCcceeeecCCCCHHHHHHHHHHHHHHHhc--ccceeEEeecchhhhhhhcccccceEE
Q psy6283 650 VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKKKKYAAL 710 (1030)
Q Consensus 650 VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~--~~~~leLe~E~vf~~llll~KKrYa~l 710 (1030)
|||+|-..|.|.++..+.++|..-++-|.+.|+. +|..|.|++...|..++++.+-+|+|+
T Consensus 334 VVyA~~~riil~T~K~~~~~A~ay~~yi~~~i~~~~lF~~l~l~~~~~w~~LlwmD~~NygGi 396 (396)
T PF08490_consen 334 VVYADFNRIILCTGKTSLENAYAYVQYILKSIRSRELFSWLDLKPVRYWDSLLWMDPYNYGGI 396 (396)
T ss_pred EEEEcCCEEEEECCCCCHHHHHHHHHHHHHHHhcccccccEEeEHHHHhhhheEecccccCCC
Confidence 9999999999999999999999999999998875 678899999999999999999999974
No 34
>PF03175 DNA_pol_B_2: DNA polymerase type B, organellar and viral; InterPro: IPR004868 This entry is found in DNA polymerase type B proteins. Proteins in this entry are found in plant and fungal mitochondria, and in viruses.; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1XI1_B 2EX3_G 1XHZ_D 1XHX_C 2PZS_B 2PY5_A 2PYL_A 2PYJ_A.
Probab=98.31 E-value=6.8e-09 Score=122.67 Aligned_cols=34 Identities=38% Similarity=0.564 Sum_probs=24.6
Q ss_pred CccccCceeeccccccccceEEEeeccccChhHHH
Q psy6283 493 KAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527 (1030)
Q Consensus 493 ~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~ 527 (1030)
..+|-||.+-.-.+|.+. .|..+|++|||||+|.
T Consensus 203 r~s~~GGr~~~~~~~~~~-~i~~yDvnSLYP~~m~ 236 (459)
T PF03175_consen 203 RKSYYGGRCEVFKPGIKN-KIYYYDVNSLYPSAMK 236 (459)
T ss_dssp -EEE-GGGB-TEEEESE----EEEEETTHHHHHHH
T ss_pred HhhcCCceeeeeeccccc-ceeeeeccCCcHHHHh
Confidence 468999998666667776 6999999999999998
No 35
>PHA02735 putative DNA polymerase type B; Provisional
Probab=98.11 E-value=1.5e-05 Score=90.37 Aligned_cols=228 Identities=17% Similarity=0.203 Sum_probs=111.4
Q ss_pred cccHHHHHHHHHHHHHhcCCcceEEeeeeeccccCC----CCCCCCccEEEEEeccCCCCCCCCCcCCceeeecccCchh
Q psy6283 272 PVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNL----PGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSF 347 (1030)
Q Consensus 272 ~~~~~~v~~e~~~~~~~~~i~~~~~k~v~~~yaf~~----~~vp~~~~~lkv~y~~~~p~~~~~~~g~tfs~vfG~~~~~ 347 (1030)
+.+...|.+-+.+-....+|..| -+.-|+. .+|..+.+.-++..+++.-+ . +..||...+.|.+.+
T Consensus 64 ~l~a~~i~~~ltd~k~rs~in~w------ynldfdan~il~~i~se~elaelvvs~ttla-n---sdrtyrqymdt~~~~ 133 (716)
T PHA02735 64 ELDAEQIMDALTDHKARSNINIW------YNLDFDANAILNGICSEEELAELVVSGTTLA-N---SDRTYRQYMDTDKEL 133 (716)
T ss_pred hhcHHHHHHHHhhhhhcccceee------EeccccHHHHHHhhcCHHHHhHHeecCcccc-c---cchhhhhhccccchh
Confidence 34445555544444445555554 2444543 35666666666666665443 2 336666666666655
Q ss_pred hhhHHhhhhccCCeEEEecCccCCCCcCccccc-eEeecchh-----hhcccC---eEEE---------EccHHHHHHHH
Q psy6283 348 LENLLLERKIKGPSWLEFPEAEKFPSRISWCKY-EVQCNQME-----KIRSKQ---GLIY---------LIGIVEFIKFT 409 (1030)
Q Consensus 348 ~E~f~l~~~i~Gp~wl~i~~~~~~~~~~s~ck~-e~~~~~~~-----~l~~~~---~viv---------r~Gl~~lv~Y~ 409 (1030)
---=.+-.-|+| .+|.|.+-.-+-. .++.. .+.+.+.. -|+..+ .|-. .-....+++|+
T Consensus 134 ~~~ey~i~yik~-k~l~i~d~n~~i~--~hyd~aqffytsldna~~ewlge~ka~dgid~~~f~~k~yi~~n~~dilkya 210 (716)
T PHA02735 134 AGGEYEIFYIKG-KFLEIKDENGHIS--PHYDAAQFFYTSLDNAAEEWLGENKAKDGIDAGKFDAKEYIKDNFDDILKYA 210 (716)
T ss_pred cCceEEEEEEec-eeEEEeccCCccc--ccccHHHHHHHHHHhHHHHHhccccccccccccccchHHHHhhhHHHHHHHH
Confidence 221112234566 5788864322110 11111 11111111 121111 0100 11277889999
Q ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCccccccccCC
Q psy6283 410 MLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGK 489 (1030)
Q Consensus 410 ~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d~~~~~~~~ 489 (1030)
-.||.|+..|... ....+-+| .+|+.|-.+.|- |-.++...+ +-.++... .... +
T Consensus 211 k~da~l~~dl~~e--~~n~~e~l----dipmgrp~stgy-------la~~yl~~~--~~ekp~lg-----~~~m-----a 265 (716)
T PHA02735 211 KIDAELTQDLAIE--ATNEAEEL----DIPMGRPFSTGY-------LAAEYLDAN--LEEKPGLG-----NEAM-----A 265 (716)
T ss_pred hhhHHHHHHHHHH--HhhhHhhc----CCccCCCcccch-------hhHHHHhcc--cccCCCCC-----hHHH-----H
Confidence 9999999987755 12222222 234433332221 111111111 11111100 0000 0
Q ss_pred CCCCccccCceeeccccccccceEEEeeccccChhHHHHhcccccccccc
Q psy6283 490 GRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR 539 (1030)
Q Consensus 490 ~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~ 539 (1030)
.---..|.||.+=--++|=+-. |+.-|.||+||+||+..- .|.|+...
T Consensus 266 ~~~wEsYyGGrfeV~KrgnvGE-v~~pDINSaYPaim~dlP-DpKTl~W~ 313 (716)
T PHA02735 266 KLAWESYAGGRFEVFKRGNVGE-VAAPDINSAYPAILADLP-DPKTLNWK 313 (716)
T ss_pred HHHHHhhcCCceEEeccCccce-eeeccccccchHHHHhCC-CCcccchh
Confidence 0113579999976667787765 999999999999999943 46776543
No 36
>PTZ00121 MAEBL; Provisional
Probab=97.21 E-value=0.0036 Score=79.96 Aligned_cols=8 Identities=38% Similarity=0.580 Sum_probs=4.2
Q ss_pred CCCCceee
Q psy6283 45 PGKGHAKI 52 (1030)
Q Consensus 45 ~~~~~~k~ 52 (1030)
-|+|+.++
T Consensus 49 ~g~g~~ky 56 (2084)
T PTZ00121 49 HGEGDFKY 56 (2084)
T ss_pred ccCCceee
Confidence 45555554
No 37
>PTZ00121 MAEBL; Provisional
Probab=96.97 E-value=0.014 Score=74.81 Aligned_cols=8 Identities=38% Similarity=0.555 Sum_probs=4.9
Q ss_pred cccceEEe
Q psy6283 704 KKKYAALS 711 (1030)
Q Consensus 704 KKrYa~l~ 711 (1030)
+++|-|+.
T Consensus 966 r~k~WGvW 973 (2084)
T PTZ00121 966 RKKYWGIW 973 (2084)
T ss_pred ccccceee
Confidence 56676663
No 38
>KOG1798|consensus
Probab=96.31 E-value=0.055 Score=70.00 Aligned_cols=267 Identities=12% Similarity=0.157 Sum_probs=156.3
Q ss_pred HHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcC-C--CccccccccCCCCCC
Q psy6283 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK-E--GEETGEANKGKGRKK 493 (1030)
Q Consensus 417 ~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~-~--~~d~~~~~~~~~~~~ 493 (1030)
...+.-.++|....++++.+++|+...-..-...-+..++-+++.+.|.++=..... .+. + +.|+.... ..
T Consensus 1583 ~h~~a~~~wl~~~i~~SRY~~VPigNl~~D~~~f~iD~~faR~Lrk~~~vLW~s~~~-~PDlGGie~d~~~~s-----~~ 1656 (2173)
T KOG1798|consen 1583 QHYLASGSWLSHRIKLSRYSHVPIGNLPEDWLTFIIDLFFARKLRKHNHVLWWSKNG-VPDLGGIENDEMLLS-----SE 1656 (2173)
T ss_pred HHHHhHHHHHHHHHHHHHhcCCcccCCchHHHHHHHHHHHHHHHHhcCeeEEecCCC-CCCCCcccchhhhhh-----HH
Confidence 334444567888889999999988665433333457888889999988886221100 000 0 00000000 00
Q ss_pred ccccCceeeccccccccceEEEeeccccChhHHHH-------hc-----cccccccccCCCccccccccCC-CCCccccC
Q psy6283 494 AAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQE-------YN-----ICFTTIPVRMLQDSDITTLCEY-LPEHQVDT 560 (1030)
Q Consensus 494 ~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~-------~N-----Ic~tTv~~~~~d~~~i~~~~p~-~p~~~~~~ 560 (1030)
-.-....|.--.||+|++..+-|+..-|-=+-|.. -+ +.+....... ..+.+.+.|.. +.......
T Consensus 1657 ~~~~s~~~~ln~~G~Y~~v~vel~l~nlavntll~S~lvne~EG~d~~g~~~dv~~~~~-~~d~~~~~~~De~a~~~~~f 1735 (2173)
T KOG1798|consen 1657 LQTTSDTVELNRPGAYSTVCVELKLSNLAVNTLLQSALVNEMEGADFLGVTFDVNDRTA-AEDDLTGACYDETALCAQAF 1735 (2173)
T ss_pred hcccccchhhccccccceeEEEEEehHHHHHHHHHHhhhhhhhccccccccccccccch-hhccccccccccccchHHHH
Confidence 00112455556789999977778764333222221 11 1110000000 01111111100 00000111
Q ss_pred CcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHH
Q psy6283 561 GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640 (1030)
Q Consensus 561 GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tk 640 (1030)
-||-.+|..++.. ..+. ...++ -++.++++-.+-...|.++++.+...+.-.=+.+++...
T Consensus 1736 ~VLk~llk~~~~d------~~~~----gN~~A---------D~iv~~l~~Wl~spss~L~dpaL~~~vh~lmkK~fl~L~ 1796 (2173)
T KOG1798|consen 1736 RVLKQLLKRWVLD------AAKS----GNIYA---------DLIVQHLSRWLRSPSSKLHDPALHRHVHVLMKKLFLQLL 1796 (2173)
T ss_pred HHHHHHHHHHHHH------HHhh----cchhH---------HHHHHHHHHHHcCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence 2333333333321 1111 01111 124456666677788999999999999988877777777
Q ss_pred HHhhhccceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhc--ccceeEEeecchhhhhhhcccccceE
Q psy6283 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKKKKYAA 709 (1030)
Q Consensus 641 elve~~g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~--~~~~leLe~E~vf~~llll~KKrYa~ 709 (1030)
.-+...|+.|||.|-+=|-|+++..+.+.|...++-+.+.|.. .|..|.|.+-..|..+++...-+|.|
T Consensus 1797 ~e~~rlGa~iIyA~~nkili~T~K~~~e~A~~y~e~l~ksi~t~~~f~~l~i~~~r~wd~llwmD~~n~~g 1867 (2173)
T KOG1798|consen 1797 AELRRLGAIIIYADFNKILINTGKFSVEAAKAYSEYLLKSISTLPVFHLLDINPVRYWDSLLWMDAHNYGG 1867 (2173)
T ss_pred HHHHhcCCeEEEecCCEEEEecCCCCHHHHHHHHHHHHHhhhcccchhheeccHHHHHHHHhhhccccccc
Confidence 7778899999999999999999999999999999999888865 35678888888899999999888544
No 39
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.39 E-value=0.059 Score=69.62 Aligned_cols=7 Identities=29% Similarity=0.406 Sum_probs=4.1
Q ss_pred EEEeecc
Q psy6283 513 IILMDFN 519 (1030)
Q Consensus 513 V~vLDFn 519 (1030)
|-+.||.
T Consensus 181 VKLsDFG 187 (1021)
T PTZ00266 181 AKIGDFG 187 (1021)
T ss_pred eEEccCC
Confidence 4556664
No 40
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=95.31 E-value=0.091 Score=67.98 Aligned_cols=6 Identities=33% Similarity=0.296 Sum_probs=2.6
Q ss_pred HHHHHH
Q psy6283 277 QVYSEF 282 (1030)
Q Consensus 277 ~v~~e~ 282 (1030)
.+..|+
T Consensus 58 ~~~~EI 63 (1021)
T PTZ00266 58 QLVIEV 63 (1021)
T ss_pred HHHHHH
Confidence 344444
No 41
>KOG4364|consensus
Probab=95.07 E-value=0.17 Score=61.35 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=4.6
Q ss_pred cchHHHHHHHH
Q psy6283 804 KVCITQIRLSR 814 (1030)
Q Consensus 804 ~~pHV~vA~r~ 814 (1030)
+.+-|.++++.
T Consensus 162 ~s~~vVl~~~~ 172 (811)
T KOG4364|consen 162 SSVRVVLKLRR 172 (811)
T ss_pred CcchhHHhhhh
Confidence 34444444433
No 42
>KOG4676|consensus
Probab=93.83 E-value=0.017 Score=65.91 Aligned_cols=12 Identities=17% Similarity=0.124 Sum_probs=6.9
Q ss_pred cchHHHHHHHHH
Q psy6283 804 KVCITQIRLSRN 815 (1030)
Q Consensus 804 ~~pHV~vA~r~~ 815 (1030)
.+..+.-|++|.
T Consensus 198 ~qts~~halr~~ 209 (479)
T KOG4676|consen 198 KQTSSKHALRSH 209 (479)
T ss_pred hhhhHHHHHHhc
Confidence 455556666663
No 43
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are
Probab=92.11 E-value=0.075 Score=58.04 Aligned_cols=31 Identities=29% Similarity=0.577 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q psy6283 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQ 431 (1030)
Q Consensus 401 Gl~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~ 431 (1030)
++..++.||++||.++++|+.++++|||++|
T Consensus 204 ~l~~l~~y~~~Da~l~~~L~~kl~il~Ltkq 234 (234)
T cd05776 204 SLLKLLEHTEKDAYLILQLMFKLNILPLTKQ 234 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCcCCCC
Confidence 3889999999999999999999999999865
No 44
>PHA03144 helicase-primase primase subunit; Provisional
Probab=89.06 E-value=11 Score=47.51 Aligned_cols=225 Identities=12% Similarity=0.169 Sum_probs=139.3
Q ss_pred eccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCCCccccCCcchHHHHHHHHHHHHHHHHh
Q psy6283 502 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581 (1030)
Q Consensus 502 leP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p~~~~~~GIlP~iL~~Ll~~R~~vKk~m 581 (1030)
++|-.=+..-+++-|||+-++|++..+. .|+ . .-|...+..| +
T Consensus 402 l~~P~~i~~~wlAKFDFSaFfptLy~al--~p~-----h------------------------~RL~~~v~aR------~ 444 (746)
T PHA03144 402 LDHPAVIGGVWLAKFDFSAFFPTLYLAL--FPG-----H------------------------ERLARAVRAR------A 444 (746)
T ss_pred cCCCceecceeEEEeechhhHHHHHHHh--CCC-----c------------------------hhHHHHHHHH------h
Confidence 4443334444689999999999999887 232 0 0133344444 2
Q ss_pred cCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhccceeEEecCcceeee
Q psy6283 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMIS 661 (1030)
Q Consensus 582 k~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~g~~VIYGDTDSI~V~ 661 (1030)
+. .. -.||-.+-+++|-|-. -++....+|-..+..|=......+...|+-|-=..-|+.|=-
T Consensus 445 r~--~~-----------pwlK~aLv~f~GgL~h-----~~p~~yr~ii~i~N~Is~~vE~~A~~~~FAiCtYvkDGfWG~ 506 (746)
T PHA03144 445 RR--EK-----------PWLKAALVSFFGGLQH-----ICPAAYRALIALANAVSRALERAANAVGFAVCTYVKDGFWGV 506 (746)
T ss_pred cc--cC-----------chHHHHHHHHhhhhhh-----cCHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEeecCCceEEe
Confidence 22 11 1577788999997755 567888899998888877788888889998887888998755
Q ss_pred cCCC-----C---HHHHHHHHHHHHHHHhc-------cc---ceeEEeecchhhhhhhcccccceEEeeeecCCCceeee
Q psy6283 662 CNVN-----D---YDSVFKIGNQIKSECNK-------LY---KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICS 723 (1030)
Q Consensus 662 ~~~~-----d---~eea~~ig~~i~~~Vn~-------~~---~~leLe~E~vf~~llll~KKrYa~l~~~~~~dG~~~~~ 723 (1030)
++.. . ...+..+........++ .+ .++.|.+||||...++..-..|=..+-. ++ .
T Consensus 507 f~~~~~~~~~~~a~~~ae~lR~ace~aA~~~L~~~GL~~~~~~~l~LRlEGvyThAvsW~~~~yWLwN~~---~~----~ 579 (746)
T PHA03144 507 LGVDPQDAVSADALAAAERARAACQAAAEAVLADMGLLLPEGAPLHLRLEGLYTHAVSWSQHGYWLWNRR---TD----T 579 (746)
T ss_pred ccCCcccccccchhhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeEEeeeeeeecCcceeeccCC---CC----c
Confidence 5432 1 12233332222222222 12 2578889999999999988888655421 21 1
Q ss_pred ceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHh
Q psy6283 724 QEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEIT 793 (1030)
Q Consensus 724 ~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvIt 793 (1030)
-.+-|+-. |.-.+..+|+....+|.....+. -+.+.+.+..++.+..+.........+.+-...+
T Consensus 580 ~~~vGFP~-Rs~~a~~ak~aL~~lL~~~~~~~----~~~~~~~~~a~~~cd~lv~~AF~~R~D~~fWs~~ 644 (746)
T PHA03144 580 EDFVGFPL-RSAAARAAKAALRALLRAAVADS----ADAETLRQAAREACDRLVLEAFARRLDAEFWSVP 644 (746)
T ss_pred cceeeccC-chHHHHHHHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHHHHHHHhhcCCCCeeecC
Confidence 24579965 67777777777777775222221 1345566666666666666555555554443333
No 45
>KOG1029|consensus
Probab=88.14 E-value=4.7 Score=50.29 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=16.0
Q ss_pred hhccCchhHHHHHHHHHHH---hhcCeeccCC
Q psy6283 442 RTLMGGRSERNEFLLLHAF---HEKSYVLPDK 470 (1030)
Q Consensus 442 rtl~~gr~~r~E~lLL~~~---~~~~yivPdk 470 (1030)
++-..|+...+||.+--.+ .-+|+-+|.-
T Consensus 59 DldkDGrmdi~EfSIAmkLi~lkLqG~~lP~~ 90 (1118)
T KOG1029|consen 59 DLDKDGRMDIREFSIAMKLIKLKLQGIQLPPV 90 (1118)
T ss_pred hcCccccchHHHHHHHHHHHHHHhcCCcCCCC
Confidence 3335566666776554332 3467766643
No 46
>KOG1029|consensus
Probab=87.48 E-value=2.7 Score=52.19 Aligned_cols=11 Identities=27% Similarity=0.305 Sum_probs=5.0
Q ss_pred HHhCCcchhhc
Q psy6283 434 NVCGNVLSRTL 444 (1030)
Q Consensus 434 ~iaG~~~srtl 444 (1030)
.+.|..+-.+|
T Consensus 81 kLqG~~lP~~L 91 (1118)
T KOG1029|consen 81 KLQGIQLPPVL 91 (1118)
T ss_pred HhcCCcCCCCC
Confidence 34455544433
No 47
>KOG4676|consensus
Probab=86.21 E-value=0.041 Score=62.87 Aligned_cols=9 Identities=22% Similarity=-0.016 Sum_probs=3.6
Q ss_pred ccccccCCC
Q psy6283 606 NSMYGCLGF 614 (1030)
Q Consensus 606 NS~YG~lG~ 614 (1030)
|+.-|.|.+
T Consensus 104 navprll~p 112 (479)
T KOG4676|consen 104 NAVPRLLPP 112 (479)
T ss_pred cccccccCC
Confidence 344444433
No 48
>PHA03181 helicase-primase primase subunit; Provisional
Probab=85.88 E-value=18 Score=45.58 Aligned_cols=226 Identities=14% Similarity=0.171 Sum_probs=143.5
Q ss_pred eccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCCCccccCCcchHHHHHHHHHHHHHHHHh
Q psy6283 502 LEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581 (1030)
Q Consensus 502 leP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p~~~~~~GIlP~iL~~Ll~~R~~vKk~m 581 (1030)
++|-.=+..-.++-|||+-++|+|..+.- |+ . .-|...+.. .+
T Consensus 411 l~~P~~i~~~~~AkFDFSaFfptLylaLf--P~-----h------------------------~rL~~~v~a------R~ 453 (764)
T PHA03181 411 FREPTLIENAAIAKFDFSAFFATLYLGLF--PC-----H------------------------SRLRDAVKA------RL 453 (764)
T ss_pred cCCCceeccceEEEeechhhHHHHHHHHC--CC-----c------------------------HHHHHHHHH------Hh
Confidence 54444444456899999999999988743 32 0 013333333 33
Q ss_pred cCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhccceeEEecCcceeee
Q psy6283 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMIS 661 (1030)
Q Consensus 582 k~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~g~~VIYGDTDSI~V~ 661 (1030)
+.. . --||..+-+++|-|-. -++....+|-..+..|=...-..+...|+-|-=..-|+.|=-
T Consensus 454 rre--~-----------~wLK~aLv~f~G~Lkh-----~~p~~y~aii~i~N~Is~~vE~~A~~~~FAiCtYvkDGfWG~ 515 (764)
T PHA03181 454 RRE--K-----------DWLKRPIVEFGGLLKH-----FREDVYKAIIGIGNHISLEVEATASTLMFAPCTYVKDGMWGT 515 (764)
T ss_pred ccc--C-----------chHHHHHHHHhhhhhh-----cCHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEeecCCceEEe
Confidence 321 1 1577788889987755 567888899999988888888888889998877888988755
Q ss_pred cCCC-------C--HHHHH-HHHHHHHHHHhc-------ccc---eeEEeecchhhhhhhcccccceEEeeeecCCCcee
Q psy6283 662 CNVN-------D--YDSVF-KIGNQIKSECNK-------LYK---QLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMI 721 (1030)
Q Consensus 662 ~~~~-------d--~eea~-~ig~~i~~~Vn~-------~~~---~leLe~E~vf~~llll~KKrYa~l~~~~~~dG~~~ 721 (1030)
++.. + ...++ .+-.......++ .++ ++.|-+||||...++..-..|=..+. .++.
T Consensus 516 F~~~~~~~~~~~~~~~~a~~~lR~ac~~aA~~~l~~~GL~~p~~~~l~LRlEGvYThAvsW~~n~yWLwN~---~~~~-- 590 (764)
T PHA03181 516 FIDKANNVIVSPEGNENIFETLRVACNESANRLATSIGLRFPDGINLQMRLEGVYTHAMSWNANCYWLWNR---NTRE-- 590 (764)
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeEEeeeeeeecCcceeeccC---CCCC--
Confidence 4422 1 12232 222222222222 222 57788999999999988888765532 1211
Q ss_pred eeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhH
Q psy6283 722 CSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLE 791 (1030)
Q Consensus 722 ~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lv 791 (1030)
-.+-|+- -|...+.-+|+....+|..|....+ +.-+.+.+++..++.+.++...-....-+.+-..
T Consensus 591 --~~~vGFP-~r~~~~~~ak~~Ls~lL~~i~~~~~-~~~~l~~~~~~a~~~cd~Lv~~AF~~R~D~~fWS 656 (764)
T PHA03181 591 --SDFVGFP-KQPEFATHAKEALSTLLEEICLCND-TDESLLTIQEKVQKVFEELLYMAFKKRGDASFWS 656 (764)
T ss_pred --cceeecC-CCcHHHHHHHHHHHHHHHHHHhccC-CcccHHHHHHHHHHHHHHHHHHHHhhcCCCCeee
Confidence 1346884 5777888899999999988877652 1124555677777777766666655554444333
No 49
>KOG0163|consensus
Probab=85.85 E-value=3.3 Score=51.35 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhcc
Q psy6283 403 VEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLM 445 (1030)
Q Consensus 403 ~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~ 445 (1030)
..+-.+|+.=+.--++=|+.-.+|-.-.+|-.--|+....+-.
T Consensus 467 NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f 509 (1259)
T KOG0163|consen 467 NSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEF 509 (1259)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEe
Confidence 3444555555555555555555666666666666665554443
No 50
>KOG0334|consensus
Probab=85.76 E-value=0.88 Score=58.28 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy6283 1007 EEEKKEEEEKEEEEKKRR 1024 (1030)
Q Consensus 1007 ~ee~~~~eee~~~~re~~ 1024 (1030)
...++.+.+++.+++++-
T Consensus 140 ~~~~~~l~e~l~~rr~~~ 157 (997)
T KOG0334|consen 140 GSIQARLAEELRKRRERV 157 (997)
T ss_pred chhhhhHHHHHHHHHHHH
Confidence 456666666666665544
No 51
>KOG0151|consensus
Probab=84.90 E-value=0.21 Score=60.94 Aligned_cols=11 Identities=36% Similarity=0.232 Sum_probs=4.7
Q ss_pred HHhCCcchhhc
Q psy6283 434 NVCGNVLSRTL 444 (1030)
Q Consensus 434 ~iaG~~~srtl 444 (1030)
.-.||++...|
T Consensus 345 re~~nplF~fl 355 (877)
T KOG0151|consen 345 RERGNPLFSFL 355 (877)
T ss_pred hhccChhHHHH
Confidence 33445444433
No 52
>KOG1847|consensus
Probab=81.61 E-value=0.19 Score=60.55 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=16.3
Q ss_pred cceEEEeeccccChhHHHHhccc
Q psy6283 510 DKFIILMDFNSLYPSIIQEYNIC 532 (1030)
Q Consensus 510 ~~~V~vLDFnSLYPSII~~~NIc 532 (1030)
++++.-+||.-+||..=+.-.|+
T Consensus 351 ~~~~p~~~~~~~~~tt~~~~~V~ 373 (878)
T KOG1847|consen 351 DKSQPKLELQIVEPTTEMKRVVD 373 (878)
T ss_pred CCCCccceeeeecccchhhhhhh
Confidence 34577788888888877665554
No 53
>KOG0151|consensus
Probab=78.70 E-value=0.27 Score=60.10 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=7.8
Q ss_pred HHHhhcCeeccCC
Q psy6283 458 HAFHEKSYVLPDK 470 (1030)
Q Consensus 458 ~~~~~~~yivPdk 470 (1030)
.-|.--|..+|..
T Consensus 388 rmfknggrwippp 400 (877)
T KOG0151|consen 388 RMFKNGGRWIPPP 400 (877)
T ss_pred hhcccCceecCCC
Confidence 3455667777753
No 54
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic
Probab=78.42 E-value=1.7 Score=47.39 Aligned_cols=72 Identities=7% Similarity=0.058 Sum_probs=43.6
Q ss_pred hhccCCeEEEecCccCCCCcCccccceEeecchhhhcccCe-----EE---EE---ccHHHHHHHHHHHHHHHHHHHHHh
Q psy6283 355 RKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQG-----LI---YL---IGIVEFIKFTMLHSSYIIKIMCEL 423 (1030)
Q Consensus 355 ~~i~Gp~wl~i~~~~~~~~~~s~ck~e~~~~~~~~l~~~~~-----vi---vr---~Gl~~lv~Y~~~Da~l~~~L~~kl 423 (1030)
..|.|...+++........+++.++++-++.. .++.++. .| .+ -++..+++||++||.++++|+.++
T Consensus 146 ~~i~GR~~iD~~~~~~~~~kl~sy~L~~Va~~--~Lg~~k~d~~~~~i~~~~~~~~~~~~~l~~Y~~~Da~l~l~L~~kl 223 (230)
T cd05777 146 INIEGRIQFDLLQVIQRDYKLRSYSLNSVSAH--FLGEQKEDVHYSIITDLQNGNPETRRRLAVYCLKDAYLPLRLLDKL 223 (230)
T ss_pred EEEcCEEeeeHHHHHHHhcCcccCcHHHHHHH--HhCCCCCCCCHHHHHHHHccCHhHhHHHHHhhHHHHHHHHHHHHHH
Confidence 46778888887654433344555555433321 1111110 00 00 126789999999999999999999
Q ss_pred cchHH
Q psy6283 424 NVLPL 428 (1030)
Q Consensus 424 ~vlpl 428 (1030)
++|..
T Consensus 224 ~~~~~ 228 (230)
T cd05777 224 MCLVN 228 (230)
T ss_pred hhHcc
Confidence 88753
No 55
>KOG4661|consensus
Probab=76.97 E-value=16 Score=44.21 Aligned_cols=29 Identities=28% Similarity=0.203 Sum_probs=13.7
Q ss_pred CCCCceeeEEeecchhhHHHHHHhhhhHh
Q psy6283 45 PGKGHAKILTAGVGWAGAEVILTRFLDLW 73 (1030)
Q Consensus 45 ~~~~~~k~~~~glgW~~a~~~~~~~~~lw 73 (1030)
+|-+++.--++.|+=++++.=.-||-.|-
T Consensus 6 ~g~gdsg~gta~l~~~~~EtGtrrlseLR 34 (940)
T KOG4661|consen 6 SGLGDSGAGTAALSSAMPETGTRRLSELR 34 (940)
T ss_pred ccccccccchhhhcCCCcccccchhhhee
Confidence 44444444445555555555333333333
No 56
>KOG0163|consensus
Probab=76.80 E-value=8.8 Score=47.89 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=5.5
Q ss_pred eeeeeeeeCChHH
Q psy6283 726 IKGVDVVRRDWSQ 738 (1030)
Q Consensus 726 ~KGle~vRRD~~~ 738 (1030)
++|.-+++|-.+.
T Consensus 823 ~Rg~L~rkr~~~r 835 (1259)
T KOG0163|consen 823 ARGYLARKRHRPR 835 (1259)
T ss_pred HHHHHHHhhhchH
Confidence 3454444444443
No 57
>KOG4368|consensus
Probab=76.79 E-value=0.16 Score=60.55 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=3.6
Q ss_pred hcCchhhhc
Q psy6283 860 EGGEKEEEE 868 (1030)
Q Consensus 860 ~~~~~e~ee 868 (1030)
.++.+++|.
T Consensus 593 aRKsk~~e~ 601 (757)
T KOG4368|consen 593 ARRRKGQES 601 (757)
T ss_pred HHhhccccc
Confidence 334444443
No 58
>KOG1847|consensus
Probab=76.69 E-value=0.85 Score=55.29 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=11.3
Q ss_pred cCchhhhhHHhhhhccCCeEEEe
Q psy6283 343 TKTSFLENLLLERKIKGPSWLEF 365 (1030)
Q Consensus 343 ~~~~~~E~f~l~~~i~Gp~wl~i 365 (1030)
-.-+++-.|| ++-|.|-.++..
T Consensus 227 H~Lnpyykfl-Qkll~ek~yv~~ 248 (878)
T KOG1847|consen 227 HHLNPYYKFL-QKLLTEKSYVEE 248 (878)
T ss_pred cccCHHHHHH-HHHHhccccchh
Confidence 3445555664 455555555443
No 59
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=68.74 E-value=13 Score=42.80 Aligned_cols=17 Identities=41% Similarity=0.659 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy6283 1007 EEEKKEEEEKEEEEKKR 1023 (1030)
Q Consensus 1007 ~ee~~~~eee~~~~re~ 1023 (1030)
-++|++.++++++++.|
T Consensus 304 peeQrK~eeKe~kk~~r 320 (321)
T PF07946_consen 304 PEEQRKYEEKERKKEQR 320 (321)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 45666666665555443
No 60
>KOG2002|consensus
Probab=65.95 E-value=11 Score=48.37 Aligned_cols=12 Identities=25% Similarity=0.099 Sum_probs=5.9
Q ss_pred HHHHHHHHhccC
Q psy6283 744 GKFVISQILDEQ 755 (1030)
Q Consensus 744 ~~~vL~~IL~~~ 755 (1030)
+..+-..+|...
T Consensus 760 ~kkla~s~lr~~ 771 (1018)
T KOG2002|consen 760 LKKLAESILRLE 771 (1018)
T ss_pred HHHHHHHHHhcc
Confidence 344444555554
No 61
>KOG2548|consensus
Probab=64.98 E-value=2.2 Score=50.89 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=7.6
Q ss_pred EeeccccChhHHHHhccc
Q psy6283 515 LMDFNSLYPSIIQEYNIC 532 (1030)
Q Consensus 515 vLDFnSLYPSII~~~NIc 532 (1030)
.||.+=|=|.-|-..|-|
T Consensus 201 e~D~~~ld~eq~~tlnkq 218 (653)
T KOG2548|consen 201 EFDSNDLDDEQMETLNKQ 218 (653)
T ss_pred ccccccCCHHHHHHHHhh
Confidence 344444444444444444
No 62
>KOG4246|consensus
Probab=64.27 E-value=2.9 Score=52.18 Aligned_cols=14 Identities=14% Similarity=0.057 Sum_probs=6.9
Q ss_pred cChhhhHHhhcccC
Q psy6283 785 VPLTLLEITKQLTK 798 (1030)
Q Consensus 785 vpl~~lvItk~LsK 798 (1030)
-|+++++.+.+.+.
T Consensus 241 ~p~~~~~~~a~~s~ 254 (1194)
T KOG4246|consen 241 RPLDDYIYPASSSN 254 (1194)
T ss_pred CCCCCccchhhhcC
Confidence 35555555544443
No 63
>PHA03140 helicase-primase primase subunit; Provisional
Probab=64.22 E-value=1.7e+02 Score=37.31 Aligned_cols=225 Identities=12% Similarity=0.142 Sum_probs=134.7
Q ss_pred eeccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCCCccccCCcchHHHHHHHHHHHHHHHH
Q psy6283 501 VLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580 (1030)
Q Consensus 501 VleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p~~~~~~GIlP~iL~~Ll~~R~~vKk~ 580 (1030)
+++|-.=+..-+++-|||+-++|+|..+.- |+ . .-|..++..|
T Consensus 408 il~~P~~i~~~wlAKFDFSaFfptLY~alf--P~-----h------------------------~rL~r~v~aR------ 450 (772)
T PHA03140 408 ILDSPVCVRDLWLAKFDFSAFFPTIYCALF--PE-----H------------------------ARLARIIRAR------ 450 (772)
T ss_pred ccCCCceeccceEEEeechhhHHHHHHHHC--cC-----c------------------------HHHHHHHHHH------
Confidence 355544444456789999999999988743 32 0 1144444444
Q ss_pred hcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhccceeEEecCcceee
Q psy6283 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI 660 (1030)
Q Consensus 581 mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~g~~VIYGDTDSI~V 660 (1030)
++.. .| -||-.+.+++|-|-. -++....+|-+.+..|=......+.+.|+-|-=..-|+.|=
T Consensus 451 ~rre--~p-----------~LK~aLv~f~GgLrh-----~~p~~y~aii~i~N~Is~~vE~~A~~~~FAiCtYvKDGFWG 512 (772)
T PHA03140 451 RRRG--RP-----------CLKPALVTFFGGLRH-----IHPPAYKAIIALANAISACVERAANERNFAICTYVKDGFWG 512 (772)
T ss_pred hccC--Cc-----------hHHHHHHHHhhhhhh-----cCHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEeeccCceeE
Confidence 2221 11 477778899997755 56788889999998887788888888999887778898875
Q ss_pred ecCCC---------CHHHHHHHHHHHHHHHhc--------cc---ceeEEeecchhhhhhhcccccceEEeeeecCCCce
Q psy6283 661 SCNVN---------DYDSVFKIGNQIKSECNK--------LY---KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM 720 (1030)
Q Consensus 661 ~~~~~---------d~eea~~ig~~i~~~Vn~--------~~---~~leLe~E~vf~~llll~KKrYa~l~~~~~~dG~~ 720 (1030)
-++.. ....++.+-......+++ .+ ..+.|-+||||...+...-..|=..+. ..+..
T Consensus 513 ~F~~~~~~~~~~~~~~~~a~~lR~ace~aA~~~L~~~~GL~~~~~~~l~LRlEGvyThAvsW~~~~yWLwN~---~~~~~ 589 (772)
T PHA03140 513 AFGDLVPGAVSRDAARAAALALRDDCERAVEAVLRDDLGLRPAEGAEPHLRFEGVFTHAVSWCTTGYWLWNA---TTGES 589 (772)
T ss_pred ecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCceEEEeEEeeeeeeecCcceeeccc---CCCCc
Confidence 44332 122333322222222221 22 257788899999999988887765431 12211
Q ss_pred eeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCC-------CCC----CChhHHHHHHHHHHHHHHHHhhCCCcChh
Q psy6283 721 ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS-------YTD----YSLDDRLQNIHEHMKKIRTDLDNGFVPLT 788 (1030)
Q Consensus 721 ~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~-------~~~----~~~e~~v~~I~~~l~~~~~~l~~g~vpl~ 788 (1030)
-.+-|+- -|...+.-+|+....+| ....+.. |+. ..+..+++..++.+.++...-....-+.+
T Consensus 590 ---~~~vGFP-~rs~a~~~ak~~l~~lL-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~a~~acd~Lv~~AF~~R~D~~ 663 (772)
T PHA03140 590 ---EHLVGVP-CRSEAARDAKESLAGLL-CRAVAIRERLYASTWTVSNYITWPGDTVAAAAAACDALVHAAFERRGDVR 663 (772)
T ss_pred ---cceeecc-CccHHHHHHHHHHHHHH-HhccCcchhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 1346884 57777777787777777 2211110 000 01122666777776666665555444433
No 64
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=61.23 E-value=65 Score=38.77 Aligned_cols=9 Identities=11% Similarity=0.062 Sum_probs=3.7
Q ss_pred cChhhhHHh
Q psy6283 785 VPLTLLEIT 793 (1030)
Q Consensus 785 vpl~~lvIt 793 (1030)
+|+--++.+
T Consensus 247 ~PaallLYW 255 (429)
T PRK00247 247 FPTAIALYW 255 (429)
T ss_pred chHHHHHHH
Confidence 444433333
No 65
>KOG0415|consensus
Probab=56.28 E-value=4.2 Score=46.65 Aligned_cols=18 Identities=22% Similarity=0.708 Sum_probs=11.2
Q ss_pred cCCce-eeecccCchhhhh
Q psy6283 333 SGDTF-SHVFGTKTSFLEN 350 (1030)
Q Consensus 333 ~g~tf-s~vfG~~~~~~E~ 350 (1030)
.|.++ .-++|-.+..||.
T Consensus 62 GG~si~~~lyG~q~rffea 80 (479)
T KOG0415|consen 62 GGESIYGVLYGEQARFFEA 80 (479)
T ss_pred Ccceeeeecccccchhhhh
Confidence 34443 5677777777774
No 66
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=55.50 E-value=2.8e+02 Score=34.13 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHhHHHHHHHHHHh-h-hccceeEEec----Ccc----eeeecCCCCHHHHHHHHHHHHHHHhccc
Q psy6283 618 RFFAQPLAALVTAKGREILLNTKSLV-E-NLNYEVIYGD----TDS----LMISCNVNDYDSVFKIGNQIKSECNKLY 685 (1030)
Q Consensus 618 rfy~~~lA~~IT~~GR~iL~~tkelv-e-~~g~~VIYGD----TDS----I~V~~~~~d~eea~~ig~~i~~~Vn~~~ 685 (1030)
+.-..+.+..|...|..+=...+.-- . .-+|.||+.= |.+ ||+-.+..++++...|-.-|.-+|...|
T Consensus 19 p~~~~~t~~~i~~iG~~la~~~~~~~~~~~~~y~ii~~vd~~~~~~~~ADi~~ig~~a~vdhI~nlrrIiagyl~~ay 96 (489)
T PF05262_consen 19 PHASIETAQQIRGIGSGLAEALKNGRAGSYGRYYIIHAVDPEEKKKLDADIFIIGENARVDHINNLRRIIAGYLEAAY 96 (489)
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCCccCcEEEEEecCcccccCCCCcEEEEcCCCCccHHHHHHHHHHHHHHHhc
Confidence 44557888999999987643332110 0 1357777743 444 5666666677777776666666766555
No 67
>KOG4661|consensus
Probab=52.85 E-value=82 Score=38.64 Aligned_cols=10 Identities=40% Similarity=0.219 Sum_probs=4.2
Q ss_pred cccccccccc
Q psy6283 602 KLTANSMYGC 611 (1030)
Q Consensus 602 Kl~aNS~YG~ 611 (1030)
|.++||--|-
T Consensus 392 k~~~k~ekgr 401 (940)
T KOG4661|consen 392 KTGAKSEKGR 401 (940)
T ss_pred cccccccccc
Confidence 3444444443
No 68
>KOG4246|consensus
Probab=50.86 E-value=4.3 Score=50.84 Aligned_cols=8 Identities=38% Similarity=0.966 Sum_probs=3.6
Q ss_pred eccccccc
Q psy6283 502 LEPKKGFY 509 (1030)
Q Consensus 502 leP~~GlY 509 (1030)
+.|..-+|
T Consensus 99 ~~Pqq~l~ 106 (1194)
T KOG4246|consen 99 LSPQQHLY 106 (1194)
T ss_pred cCchhhcc
Confidence 44444444
No 69
>KOG0835|consensus
Probab=50.31 E-value=1.2 Score=50.59 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=6.4
Q ss_pred HHhhhccceeE
Q psy6283 641 SLVENLNYEVI 651 (1030)
Q Consensus 641 elve~~g~~VI 651 (1030)
.++.++||.|-
T Consensus 127 ~ILr~LGF~~H 137 (367)
T KOG0835|consen 127 RILRELGFDVH 137 (367)
T ss_pred HHHHHhCCeee
Confidence 55566676543
No 70
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show
Probab=50.02 E-value=14 Score=39.27 Aligned_cols=65 Identities=14% Similarity=0.245 Sum_probs=37.3
Q ss_pred hccCCeEEEecCccCCCCcCccccceEeecchhhhcccCe------E--EEEcc--HHHHHHHHHHHHHHHHHHHHH
Q psy6283 356 KIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQG------L--IYLIG--IVEFIKFTMLHSSYIIKIMCE 422 (1030)
Q Consensus 356 ~i~Gp~wl~i~~~~~~~~~~s~ck~e~~~~~~~~l~~~~~------v--ivr~G--l~~lv~Y~~~Da~l~~~L~~k 422 (1030)
.|.|...|++........+++.|+++-.+.. .++.++. | ++.-| +..++.||++||.+|++|+.+
T Consensus 120 ~i~Gr~~lDl~~~~~~~~~l~sy~L~~v~~~--~Lg~~k~d~~~~~i~~~~~~~~~~~~l~~Y~~~D~~lt~~L~~~ 194 (195)
T cd05780 120 EIKGRIHVDLYPVARRTLNLTRYTLERVYEE--LFGIEKEDVPGEEIAEAWDSGENLERLFRYSMEDAKYTYEIGKE 194 (195)
T ss_pred ccCCeEEEeHHHHHHhhCCCCcCcHHHHHHH--HhCCCCCcCCHHHHHHHHhCCCchHHHHHHhHHHHHHHHHHHhh
Confidence 4567767776544333344555555433221 0111100 0 01123 899999999999999999875
No 71
>KOG2891|consensus
Probab=46.69 E-value=1.9e+02 Score=32.73 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=11.8
Q ss_pred eccccccccceEEEeeccccCh
Q psy6283 502 LEPKKGFYDKFIILMDFNSLYP 523 (1030)
Q Consensus 502 leP~~GlY~~~V~vLDFnSLYP 523 (1030)
|.|--|||-+||+++-.+-..|
T Consensus 19 f~kaq~lylkpia~ikisv~lp 40 (445)
T KOG2891|consen 19 FCKAQGLYLKPIAKIKISVALP 40 (445)
T ss_pred hhhhcceeeccceeEEEEEecc
Confidence 4455566655665555544444
No 72
>KOG0969|consensus
Probab=45.24 E-value=47 Score=42.18 Aligned_cols=162 Identities=21% Similarity=0.346 Sum_probs=91.7
Q ss_pred CceEEEEEEeccc---cccCCC---CEEEEEeeeeecCCCceeEEEEEEcceeeeEEEecCCCCCCCCCcccHHHHHHHH
Q psy6283 209 KKVFRMFFLDAFE---DIYKQP---GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEF 282 (1030)
Q Consensus 209 ~~~l~fy~~d~~e---~~~~~~---g~~~lfGkv~~~~~~~~~Sccv~v~~~~R~~~~lpr~~~~~~~~~~~~~~v~~e~ 282 (1030)
...+-|=-+|+-. ++.... -+|-+||-.. .--|.|+.|.|..=-.|+-|-.. + .+-.+.+..+.+
T Consensus 72 ~~~i~fqq~~~e~y~~~~~~~~~~~pvvr~fGvT~-----~G~sv~~~v~gf~pyfYv~ap~g-~---~~e~i~~~~~~l 142 (1066)
T KOG0969|consen 72 KNDIEFQQIDIEFYVENGSGTSGSVPVVRLFGVTK-----EGNSVCCHVHGFFPYFYVEAPNG-F---GPEHIGKFQQAL 142 (1066)
T ss_pred cccceEEEeehhhhccCCCcccCCCceEEEeeecc-----CCCeEEEEEecccceEEecCCCC-C---CHHHHHHHHHHH
Confidence 3456666666533 111111 2567999754 24689999999988888765432 1 222345555555
Q ss_pred HHHHHhcCCcceEEeeeee--ccccCCCCCCCCccEEEEEeccCCCC--------CCCC--CcCCc---eeeecccCchh
Q psy6283 283 DQIATQYKILDFKSRKIEK--KYAFNLPGVPDLSEYLEVRYSAKCPA--------LPSD--LSGDT---FSHVFGTKTSF 347 (1030)
Q Consensus 283 ~~~~~~~~i~~~~~k~v~~--~yaf~~~~vp~~~~~lkv~y~~~~p~--------~~~~--~~g~t---fs~vfG~~~~~ 347 (1030)
+.-+...-+... -.|.+ .|-|. + -..+.|++|.-. +|. |... .+|.. +-..|-.|+..
T Consensus 143 ~~~~~~~av~~v--e~~~k~~l~~~~--g-~~k~~f~kit~~--lP~~~~~~r~~lergv~~~~~~~~~~~~~yEsNi~f 215 (1066)
T KOG0969|consen 143 DVKVTAHAVDHV--EVVSKESLYGYQ--G-DTKQPFLKITVT--LPRMVAAARRLLERGVFISGKGEKVGFTTYESNIDF 215 (1066)
T ss_pred HHHHHHhHHHHH--HHHhhhhhheec--C-CCCceeEEEecc--cHHHHHHhHHHHHhcccccccCcceeeeEecCCccE
Confidence 543332111111 01111 12222 2 234557666543 221 1111 12222 23466778888
Q ss_pred hhhHHhhhhccCCeEEEecCcc--CCCCcCccccceEeecc
Q psy6283 348 LENLLLERKIKGPSWLEFPEAE--KFPSRISWCKYEVQCNQ 386 (1030)
Q Consensus 348 ~E~f~l~~~i~Gp~wl~i~~~~--~~~~~~s~ck~e~~~~~ 386 (1030)
.=+|..+..|-|=.|+.+.... ......|.|++|+++..
T Consensus 216 ~lrfmvd~~iVG~~wi~lp~gk~~~~~~~~s~cqlEv~v~y 256 (1066)
T KOG0969|consen 216 VLRFMVDCDIVGMNWIELPAGKYRIRDNRVSRCQLEVSVNY 256 (1066)
T ss_pred EEEEEecCccccceeEEeccchheeccchhcccceEEEEee
Confidence 8899999999999999997544 33578999999999964
No 73
>KOG2002|consensus
Probab=41.89 E-value=4.9 Score=51.50 Aligned_cols=10 Identities=30% Similarity=0.404 Sum_probs=4.3
Q ss_pred CEEEEEeeee
Q psy6283 228 GTVYLFGKVF 237 (1030)
Q Consensus 228 g~~~lfGkv~ 237 (1030)
|.+.||||..
T Consensus 163 Nil~LlGkA~ 172 (1018)
T KOG2002|consen 163 NILALLGKAR 172 (1018)
T ss_pred chHHHHHHHH
Confidence 3444444443
No 74
>KOG2891|consensus
Probab=39.54 E-value=1.5e+02 Score=33.56 Aligned_cols=11 Identities=18% Similarity=0.093 Sum_probs=7.4
Q ss_pred cchHHHHHHHH
Q psy6283 804 KVCITQIRLSR 814 (1030)
Q Consensus 804 ~~pHV~vA~r~ 814 (1030)
.+..|++|.|.
T Consensus 269 hlsevqiakra 279 (445)
T KOG2891|consen 269 HLSEVQIAKRA 279 (445)
T ss_pred hhhHHHHHHHH
Confidence 36678887664
No 75
>TIGR02501 type_III_yscE type III secretion system protein, YseE family. Members of this family are found exclusively in type III secretion appparatus gene clusters in bacteria. Those bacteria with a protein from this family tend to target animal cells, as does Yersinia pestis. This protein is small (about 70 amino acids) and not well characterized.
Probab=38.90 E-value=45 Score=29.97 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHHHHHHHhcCCCCChHHHHhh----HHHHHHhcccccccccc
Q psy6283 563 LPSEIKKLVESRRQVKALMKQPNLSSDLLMQY----DIRQKALKLTANSMYGC 611 (1030)
Q Consensus 563 lP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~----d~rQ~AlKl~aNS~YG~ 611 (1030)
.-.++..|...+..+|..|.. ..+|++|..| +.-+.|++|+ |.+|+.
T Consensus 15 ~~~~~~~L~~a~~~lk~qL~~-~~tp~qYq~l~~~~~A~~aA~~II-~~l~~r 65 (67)
T TIGR02501 15 ARAIIEQLEAALAELKEQLSR-GGDPQQYQEWQLLADAIEAAIKII-EILTGR 65 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 567888999999999999998 5789988655 5667777877 666654
No 76
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases. The 3'-5' exonuclease domain of Escherichia coli DNA polymerase II (Pol II) and similar bacterial proteins. Pol II is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain has a fundamental role in the proofreading activity of polII. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Pol II is involved in a variety of cellular activities, such as the repair of DNA damaged
Probab=38.83 E-value=25 Score=37.52 Aligned_cols=20 Identities=5% Similarity=0.348 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q psy6283 401 GIVEFIKFTMLHSSYIIKIM 420 (1030)
Q Consensus 401 Gl~~lv~Y~~~Da~l~~~L~ 420 (1030)
+...+++||++||.|+++|+
T Consensus 173 ~~~~l~~Y~~~Da~L~l~L~ 192 (193)
T cd05784 173 DKLALARYNLQDCELVWRIF 192 (193)
T ss_pred CHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999997
No 77
>KOG2888|consensus
Probab=38.77 E-value=14 Score=42.30 Aligned_cols=9 Identities=44% Similarity=0.427 Sum_probs=7.4
Q ss_pred ecCcceeee
Q psy6283 653 GDTDSLMIS 661 (1030)
Q Consensus 653 GDTDSI~V~ 661 (1030)
-+|||.||.
T Consensus 150 nhtdSpYIR 158 (453)
T KOG2888|consen 150 NHTDSPYIR 158 (453)
T ss_pred hcCCchhhh
Confidence 689999885
No 78
>KOG2888|consensus
Probab=37.61 E-value=4.8 Score=45.74 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHh
Q psy6283 567 IKKLVESRRQVKALM 581 (1030)
Q Consensus 567 L~~Ll~~R~~vKk~m 581 (1030)
|=.|+..+...|++|
T Consensus 132 LYklftlklTrKQ~~ 146 (453)
T KOG2888|consen 132 LYKLFTLKLTRKQLI 146 (453)
T ss_pred HHHHHHHHhHHHHHH
Confidence 444555555555444
No 79
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative
Probab=34.90 E-value=26 Score=36.77 Aligned_cols=20 Identities=10% Similarity=0.363 Sum_probs=18.4
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q psy6283 401 GIVEFIKFTMLHSSYIIKIM 420 (1030)
Q Consensus 401 Gl~~lv~Y~~~Da~l~~~L~ 420 (1030)
++..++.||++||.++++|+
T Consensus 179 ~~~~~~~Y~~~D~~~~~~l~ 198 (199)
T cd05160 179 DPERLIEYNLKDAELTLQIL 198 (199)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 37899999999999999987
No 80
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=33.75 E-value=36 Score=36.12 Aligned_cols=21 Identities=5% Similarity=-0.042 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy6283 402 IVEFIKFTMLHSSYIIKIMCE 422 (1030)
Q Consensus 402 l~~lv~Y~~~Da~l~~~L~~k 422 (1030)
+..++.||++||.+|+.|+.+
T Consensus 167 ~~~l~~Y~~~D~~~t~~l~~~ 187 (188)
T cd05781 167 RDILLKYNRDDARSTYGLAEK 187 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 789999999999999999875
No 81
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal proteins. B1 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B1displays thermostable polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family-B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Family-B DNA polymerases from thermophilic archaea are uniq
Probab=31.36 E-value=36 Score=36.61 Aligned_cols=23 Identities=4% Similarity=0.264 Sum_probs=19.9
Q ss_pred EccHHHHHHHHHHHHHHHHHHHH
Q psy6283 399 LIGIVEFIKFTMLHSSYIIKIMC 421 (1030)
Q Consensus 399 r~Gl~~lv~Y~~~Da~l~~~L~~ 421 (1030)
++.+.+|+.||++||.+|++|+.
T Consensus 180 ~~~~~~l~~Y~~~D~~lt~~L~~ 202 (204)
T cd05783 180 ELNLYELAEYNYRDAELTLELTT 202 (204)
T ss_pred hhcHHHHHHhhHHHHHHHHHHhc
Confidence 33589999999999999999874
No 82
>KOG2985|consensus
Probab=27.20 E-value=46 Score=36.93 Aligned_cols=15 Identities=20% Similarity=-0.099 Sum_probs=8.0
Q ss_pred hhccceeEEecCcce
Q psy6283 644 ENLNYEVIYGDTDSL 658 (1030)
Q Consensus 644 e~~g~~VIYGDTDSI 658 (1030)
...+.--+--||||-
T Consensus 23 ~t~~~~~~~~d~ds~ 37 (306)
T KOG2985|consen 23 QTHGIWQSAIDYDSY 37 (306)
T ss_pred ccCCceeeeeccCCC
Confidence 334444455677763
No 83
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=25.40 E-value=58 Score=35.14 Aligned_cols=20 Identities=0% Similarity=0.021 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q psy6283 401 GIVEFIKFTMLHSSYIIKIM 420 (1030)
Q Consensus 401 Gl~~lv~Y~~~Da~l~~~L~ 420 (1030)
|...|+.||++||.+|++|.
T Consensus 187 ~~~~l~~Y~~~D~~~t~~l~ 206 (207)
T cd05785 187 DPARLLAYALDDVRETEGLA 206 (207)
T ss_pred CHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999885
No 84
>KOG2253|consensus
Probab=24.30 E-value=7.9e+02 Score=31.27 Aligned_cols=6 Identities=0% Similarity=-0.507 Sum_probs=2.2
Q ss_pred hhhHHh
Q psy6283 788 TLLEIT 793 (1030)
Q Consensus 788 ~~lvIt 793 (1030)
.++.+.
T Consensus 148 ~~~~~~ 153 (668)
T KOG2253|consen 148 DEQIHK 153 (668)
T ss_pred hHHHHH
Confidence 333333
No 85
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=22.81 E-value=1.3e+02 Score=22.92 Aligned_cols=25 Identities=40% Similarity=0.700 Sum_probs=19.7
Q ss_pred HHHHHHHHHhhcCcceeeeeccccccccccChHHHHHHHH
Q psy6283 104 AAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVL 143 (1030)
Q Consensus 104 ~al~~l~~~~~~g~~~~~~v~~~~~vy~~vde~~y~~~v~ 143 (1030)
++|+.|+.+.+.| .++++||.+.-+
T Consensus 3 ~~L~~L~~l~~~G---------------~IseeEy~~~k~ 27 (31)
T PF09851_consen 3 DRLEKLKELYDKG---------------EISEEEYEQKKA 27 (31)
T ss_pred HHHHHHHHHHHcC---------------CCCHHHHHHHHH
Confidence 5788888889888 578899987543
No 86
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=21.04 E-value=2.3e+02 Score=25.63 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCChHHHHhh----HHHHHHhccc
Q psy6283 564 PSEIKKLVESRRQVKALMKQPNLSSDLLMQY----DIRQKALKLT 604 (1030)
Q Consensus 564 P~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~----d~rQ~AlKl~ 604 (1030)
-.+...|......+|+.|.. ..+|.+|.+| +.-|.|++|+
T Consensus 17 ~~i~~~L~~a~~~vkr~L~~-G~~P~eyQq~q~~~~AieAA~~Vi 60 (68)
T PF08988_consen 17 RAIEQQLRQAQSQVKRKLDR-GGTPQEYQQLQQQYDAIEAAIAVI 60 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-TSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999998 6789988655 5666666665
No 87
>COG3462 Predicted membrane protein [Function unknown]
Probab=20.81 E-value=4.2e+02 Score=26.29 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhcCcceeeeeccccccccccChHHHHHHHHh
Q psy6283 103 FAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLK 144 (1030)
Q Consensus 103 ~~al~~l~~~~~~g~~~~~~v~~~~~vy~~vde~~y~~~v~~ 144 (1030)
+.|++=||+-=|.| |+||+||.++.++
T Consensus 88 sRA~eIlkER~AkG---------------EItEEEY~r~~~~ 114 (117)
T COG3462 88 SRAEEILKERYAKG---------------EITEEEYRRIIRT 114 (117)
T ss_pred cHHHHHHHHHHhcC---------------CCCHHHHHHHHHH
Confidence 45666666544446 6899999999875
No 88
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=20.71 E-value=33 Score=36.77 Aligned_cols=21 Identities=24% Similarity=0.578 Sum_probs=0.0
Q ss_pred CCccchhhhHHHHHHHhhhcc
Q psy6283 818 GRRRRRRKKKEEKKKWKRRGG 838 (1030)
Q Consensus 818 g~~~~Kk~~~~~~k~~~~~~~ 838 (1030)
|..+.+|.++.+.++.+++.+
T Consensus 4 gaKK~kKle~Keerk~qREae 24 (188)
T PF09756_consen 4 GAKKRKKLEEKEERKAQREAE 24 (188)
T ss_dssp ---------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 89
>KOG3657|consensus
Probab=20.70 E-value=89 Score=40.15 Aligned_cols=29 Identities=7% Similarity=0.259 Sum_probs=25.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Q psy6283 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQ 431 (1030)
Q Consensus 401 Gl~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~ 431 (1030)
.++.|+.||.+|+.+|.+++.+ ++|+.++
T Consensus 357 ~fq~L~~YCA~Dv~aThqVf~~--lfP~Fle 385 (1075)
T KOG3657|consen 357 NFQPLMNYCARDVIATHQVFFR--LFPLFLE 385 (1075)
T ss_pred HHHHHHHHHhhhhHHHHHHHHH--HhHHHHH
Confidence 3899999999999999999988 6777655
Done!