Query psy6283
Match_columns 1030
No_of_seqs 527 out of 1649
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:30:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iay_A DNA polymerase delta ca 100.0 1E-86 3.6E-91 827.1 47.1 388 402-821 444-851 (919)
2 2gv9_A DNA polymerase; polymer 100.0 3.2E-79 1.1E-83 773.5 34.4 401 403-819 530-1021(1193)
3 1qht_A Protein (DNA polymerase 100.0 1E-75 3.5E-80 720.6 28.2 383 401-820 304-692 (775)
4 3k59_A POL II, DNA polymerase 100.0 4.5E-74 1.5E-78 703.0 27.1 364 401-817 327-715 (786)
5 1s5j_A DNA polymerase I; repli 100.0 3.7E-71 1.3E-75 685.0 24.5 396 401-819 367-772 (847)
6 3qex_A DNA polymerase, GP43; d 100.0 9.8E-69 3.4E-73 659.4 27.0 383 402-820 317-817 (903)
7 2py5_A DNA polymerase; protein 99.9 1.5E-23 5.3E-28 250.1 6.6 142 559-730 356-534 (575)
8 1noy_A Protein (DNA polymerase 98.7 2.2E-08 7.5E-13 114.4 8.0 69 402-472 314-382 (388)
9 1s5j_A DNA polymerase I; repli 68.3 7.8 0.00027 48.5 7.8 131 209-367 11-143 (847)
10 3k59_A POL II, DNA polymerase 54.3 4.8 0.00016 49.9 2.3 125 212-366 6-132 (786)
No 1
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-86 Score=827.10 Aligned_cols=388 Identities=27% Similarity=0.395 Sum_probs=346.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCcc
Q psy6283 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEE 481 (1030)
Q Consensus 402 l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d 481 (1030)
+..|+.||++||.++++|+.++++++++.++|+++|++|+++++.|++.+++++|||++++.|||+|++...
T Consensus 444 ~~~L~~Y~~~Da~l~~~L~~kl~~l~~~~elArl~Gi~~~~vl~rG~qi~ves~Llr~a~~~~~ilP~~~~~-------- 515 (919)
T 3iay_A 444 RRRLAVYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFRKCLEIDTVIPNMQSQ-------- 515 (919)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHSCHHHHHHHHHHHHHHHTTEECBCCCCC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHcCCCHHHhhcccchHHHHHHHHHHHhhCCeeCCCcccc--------
Confidence 458999999999999999999999999999999999999999999999999999999999999999987531
Q ss_pred ccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCC------C-ccccccccCC--
Q psy6283 482 TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML------Q-DSDITTLCEY-- 552 (1030)
Q Consensus 482 ~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~------d-~~~i~~~~p~-- 552 (1030)
....+|+||+|++|++|+|++||++|||+|||||||++|||||||+++..+ . ++++. .+|.
T Consensus 516 ---------~~~~~y~Gg~V~eP~~G~y~~pV~~lDF~SLYPSIi~~~Nlc~~Tl~~~~~~~~~~~~~~~~~~-~~p~g~ 585 (919)
T 3iay_A 516 ---------ASDDQYEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYV-ITPNGD 585 (919)
T ss_dssp ---------CCSSCCCCCCBCCCCCEEECSCEEEEEETTHHHHHHHHTTCSGGGEECHHHHHHTTCCBTTTEE-ECTTSC
T ss_pred ---------cccccCCCCEEecCCCCceeccEEEEEecccchHHHHhcCcCcccccccchhhhcCCCCCccee-eCCCCc
Confidence 124579999999999999999999999999999999999999999986431 0 01110 1221
Q ss_pred -CCCccccCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHH
Q psy6283 553 -LPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631 (1030)
Q Consensus 553 -~p~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~ 631 (1030)
|..++.+.||||.+|..|++.|+++|+.|++ +.+|.++.+||++|+|+|++|||+|||||++++||||.++|++||++
T Consensus 586 ~f~~~~~~~gilp~~l~~ll~~R~~~K~~mk~-~~d~~~~~~ld~~Q~AlKi~~NS~YG~~G~~~~r~~~~~iA~siT~~ 664 (919)
T 3iay_A 586 YFVTTKRRRGILPIILDELISARKRAKKDLRD-EKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAY 664 (919)
T ss_dssp EEECTTTCCCHHHHHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSSCCCHHHHHHHHHH
T ss_pred EEeccCCCCCchHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHhhcccccccccccccccCccCCHHHHHHHHHH
Confidence 3334568999999999999999999999998 67999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhc---------cceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhcccc-eeEEeecchhhhhhh
Q psy6283 632 GREILLNTKSLVENL---------NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK-QLELDIDGVYKYMLL 701 (1030)
Q Consensus 632 GR~iL~~tkelve~~---------g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~-~leLe~E~vf~~lll 701 (1030)
||++|+.|++++++. |++|||||||||||+++..+.++++++|+++++.||+.|+ +++||||++|.++||
T Consensus 665 GR~~l~~t~~~ie~~~~~~~g~~~~~~ViYGDTDSvfv~~~~~~~~~~~~~g~~~~~~v~~~~~~~i~le~E~vy~~~ll 744 (919)
T 3iay_A 665 GRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAKYVSTLFKHPINLEFEKAYFPYLL 744 (919)
T ss_dssp HHHHHHHHHHHHHHHSSGGGTCSSCCEEEECBSSEEEEECSCSCHHHHHHHHHHHHHHHHTTSCTTCCEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCCeeEEEcCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEeeeehhhhh
Confidence 999999999999986 8999999999999999999999999999999999999884 899999999999999
Q ss_pred cccccceEEeeeecCCCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhh
Q psy6283 702 LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLD 781 (1030)
Q Consensus 702 l~KKrYa~l~~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~ 781 (1030)
++||||||+.+++. ++ .+++++||+++||||||+|++++++.+|+.||.+. +++. +.+++.+++.+|+
T Consensus 745 ~~KKrYag~~~~~~-~~--~~~~~~KGie~vRrD~~~~~k~~~~~~l~~ll~~~-----~~~~----~~~~~~~~~~~l~ 812 (919)
T 3iay_A 745 INKKRYAGLFWTNP-DK--FDKLDQKGLASVRRDSCSLVSIVMNKVLKKILIER-----NVDG----ALAFVRETINDIL 812 (919)
T ss_dssp EETTEEEEEEESSS-SS--CCEEEEESSGGGCTTSCHHHHHHHHHHHHHHHTTC-----CHHH----HHHHHHHHHHHHH
T ss_pred hcccceEEEEeccC-CC--CceEEEEeEEEEeCCchHHHHHHHHHHHHHHHcCC-----CHHH----HHHHHHHHHHHHH
Confidence 99999999987643 21 24679999999999999999999999999999988 7654 4566777788999
Q ss_pred CCCcChhhhHHhhcccCCCCCCcchHHHHHHHHHHcCCcc
Q psy6283 782 NGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRR 821 (1030)
Q Consensus 782 ~g~vpl~~lvItk~LsK~p~~~~~pHV~vA~r~~~~g~~~ 821 (1030)
+|++|+++|+|+|+|+| -+...+|||+||+||++++|..
T Consensus 813 ~~~~~~~~lvi~k~l~k-~Y~~~~phv~~A~r~~~~~~~~ 851 (919)
T 3iay_A 813 HNRVDISKLIISKTLAP-NYTNPQPHAVLAERMKRREGVG 851 (919)
T ss_dssp TTCSCGGGGCEEEECCS-CCSSCCHHHHHHHHHHHHHSCC
T ss_pred cCCCCHHHeEEeeeccc-CCCCCChHHHHHHHHHHhcCCC
Confidence 99999999999999999 3336799999999999986443
No 2
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=100.00 E-value=3.2e-79 Score=773.48 Aligned_cols=401 Identities=24% Similarity=0.419 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcC----
Q psy6283 403 VEFIKFTMLHSSYIIKIMCEL-NVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKK---- 477 (1030)
Q Consensus 403 ~~lv~Y~~~Da~l~~~L~~kl-~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~---- 477 (1030)
..|+.||++||.++++|+.++ .++.+ .+||+|+|++|++++++|++.|+|++|||++++.|||+|++......+
T Consensus 530 ~~L~~Ycl~Da~lt~~L~~kl~~~lel-~elarl~gi~~~~vl~~G~~irves~Ll~~a~~~~~ilP~k~~~~~~~~~~~ 608 (1193)
T 2gv9_A 530 GVIGEYCIQDSLLVGQLFFKFLPHLEL-SAVARLAGINITRTIYDGQQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEA 608 (1193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHH-HHHHHHHTSCGGGTTSSCSTHHHHHHHHHHHHHHTEECBCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCCHHHHhcCccHHHHHHHHHHHHHHCCEeCCCcccccccccccc
Confidence 468899999999999999996 33444 589999999999999999999999999999999999999986321100
Q ss_pred -----C---Ccc-ccc-c-cc----------------CCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhc
Q psy6283 478 -----E---GEE-TGE-A-NK----------------GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYN 530 (1030)
Q Consensus 478 -----~---~~d-~~~-~-~~----------------~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~N 530 (1030)
. +.+ ..+ + .. ...+...+|+||+|++|.+|||++||++|||+|||||||++||
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~Gg~VleP~~Gly~~pV~vLDF~SLYPSII~a~N 688 (1193)
T 2gv9_A 609 PKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGYQGAKVLDPTSGFHVNPVVVFDFASLYPSIIQAHN 688 (1193)
T ss_dssp --------------------------------------------------CCCCCCEEECSCEEEEEEETHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccchhhhccccccccCCCEEeecCCCeeeCcEEEEeccccchHHHHHhc
Confidence 0 000 000 0 00 0112345899999999999999999999999999999999999
Q ss_pred cccccccccCCCc------cccccccC-----CCCCccccCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHH
Q psy6283 531 ICFTTIPVRMLQD------SDITTLCE-----YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599 (1030)
Q Consensus 531 Ic~tTv~~~~~d~------~~i~~~~p-----~~p~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~ 599 (1030)
|||||++...... ++.....+ .|.....+.||||.+|+.|+++|+++|+.|++. ++.++.+||++|+
T Consensus 689 lc~sTl~~~~~~~~~l~~~~dy~~~~~~~~~~~fvk~~~~~gilp~lL~~ll~~Rk~~K~~mk~~--~~~~~~llD~~Ql 766 (1193)
T 2gv9_A 689 LCFSTLSLRADAVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQS--SPEEAVLLDKQQA 766 (1193)
T ss_dssp CCTTTEESCSTTSTTCCTTTTEEEEECSSSEEEEECTTTSCCHHHHHHHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHH
T ss_pred CCcceeccCchhhccCCCccceeEecCCCCceeeccCccccchHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHH
Confidence 9999998753210 01100000 133345678999999999999999999999984 7889999999999
Q ss_pred HhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhh-----------------------ccceeEEecCc
Q psy6283 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-----------------------LNYEVIYGDTD 656 (1030)
Q Consensus 600 AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~-----------------------~g~~VIYGDTD 656 (1030)
|+|++|||+|||+|+++++|||.++|++||++||+||+.|++++|+ +|++|||||||
T Consensus 767 AlKi~aNS~YG~~G~~~grlpc~~iA~sVT~~GR~~L~~tk~~IE~~~~~~~~l~~~f~~~~~~~~~~~~g~~VIYGDTD 846 (1193)
T 2gv9_A 767 AIKVVCNSVYGFTGVQHGLLPCLHVAATVTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTD 846 (1193)
T ss_dssp HHHHHHHHHHHHHHCTTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHCGGGGGGBCSSCCEEEEEEECSS
T ss_pred HHHHhhcceecccccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhcccccccccccccccceeeccCC
Confidence 9999999999999999999999999999999999999999999874 48899999999
Q ss_pred ceeeecCCCCHHHHHHHHHHHHHHHhcc-c-ceeEEeecchhhhhhhcccccceEEeeeecCCCceeeeceeeeeeeeeC
Q psy6283 657 SLMISCNVNDYDSVFKIGNQIKSECNKL-Y-KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRR 734 (1030)
Q Consensus 657 SI~V~~~~~d~eea~~ig~~i~~~Vn~~-~-~~leLe~E~vf~~llll~KKrYa~l~~~~~~dG~~~~~~e~KGle~vRR 734 (1030)
||||.++..+.++++++|++|++.||+. | .+|+||+|++|.+|||++||||||+.+ +|+ +++||+++|||
T Consensus 847 SvfV~~~~~~~~~~~~~g~~i~~~i~~~~~~~~i~LE~Ekvy~~~ll~~KKRYag~~~----~g~----l~~KG~e~vRR 918 (1193)
T 2gv9_A 847 SIFVLCRGLTAAGLTAMGDKMASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVIY----GGK----MLIKGVDLVRK 918 (1193)
T ss_dssp EEEEEEETBCSTTHHHHHHHHHHHHHHHHCCTTCEEEEEEEEEEEEEEETTEEEEEET----TSC----EEEESCCSCCT
T ss_pred ceEEecCCCCHHHHHHHHHHHHHHHHHhccCCCEEEEeceeeHHHhhhccceEEEEec----CCE----eEEECCeeecC
Confidence 9999998888899999999999999974 5 479999999999999999999999963 454 58999999999
Q ss_pred ChHHHHHHHHHHHHHHHhccCCCCCCChhHHHH--------------------HHHHHHHHHHHHhhCCCcChhhhHHhh
Q psy6283 735 DWSQLASEAGKFVISQILDEQSYTDYSLDDRLQ--------------------NIHEHMKKIRTDLDNGFVPLTLLEITK 794 (1030)
Q Consensus 735 D~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~--------------------~I~~~l~~~~~~l~~g~vpl~~lvItk 794 (1030)
|||+|++++++.+|+.||.++ +.+++++ .|+++|.+.+.+|++|.+|+++|+|++
T Consensus 919 D~~~lvk~~~~~vl~~ll~~~-----d~~~a~~~v~~~~~~e~~~~~~~~~~~~i~~~l~~~~~~l~~~~v~i~~lvitk 993 (1193)
T 2gv9_A 919 NNCAFINRTSRALVDLLFYDD-----TVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRITDPERDIQDFVLTA 993 (1193)
T ss_dssp TSCHHHHHHHHHHHHHHHHCH-----HHHHHHHHGGGSCHHHHHHSCCCGGGHHHHHHHHHHHHHHHSSCSCCGGGCBCC
T ss_pred chHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHhhcchhhhhhccchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHh
Confidence 999999999999999999998 6666543 467789999999999999999999999
Q ss_pred cccCCCCC---CcchHHHHHHHHHHcCC
Q psy6283 795 QLTKAPEG---GKVCITQIRLSRNRRGR 819 (1030)
Q Consensus 795 ~LsK~p~~---~~~pHV~vA~r~~~~g~ 819 (1030)
+|+|+|++ +.+|||+||+||.++++
T Consensus 994 ~LsK~~~~Y~~~~~phv~vA~rl~~~~~ 1021 (1193)
T 2gv9_A 994 ELSRHPRAYTNKRLAHLTVYYKLMARRA 1021 (1193)
T ss_dssp ----------------------------
T ss_pred hcCCChhHhcccCCcHHHHHHHHHHhcC
Confidence 99999988 56999999999987764
No 3
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=100.00 E-value=1e-75 Score=720.59 Aligned_cols=383 Identities=28% Similarity=0.454 Sum_probs=318.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCc
Q psy6283 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGE 480 (1030)
Q Consensus 401 Gl~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~ 480 (1030)
++..|+.||++||.+++.|+.+ ++|++.+||+++|+++..++.+|+++++|++|||++++.|||+|+++....
T Consensus 304 ~l~~l~~Y~~~Da~lt~~L~~~--~~~~~~~la~i~g~~~~~v~r~~~~~~ve~~Ll~~~~~~~~i~P~~~~~~~----- 376 (775)
T 1qht_A 304 GLERVARYSMEDAKVTYELGRE--FFPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAPNKPDERE----- 376 (775)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTSCHHHHTTCCHHHHHHHHHHHHHHHTTBCCCCCCCHHH-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCCchhceecccHHHHHHHHhHHHHhCCEeCCCCCchhh-----
Confidence 3799999999999999999975 789999999999999999888888999999999999999999999753210
Q ss_pred cccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCccccccccCCCC--Cccc
Q psy6283 481 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLP--EHQV 558 (1030)
Q Consensus 481 d~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~~i~~~~p~~p--~~~~ 558 (1030)
. .....+|+||+|++|++|+|++ |++|||+|||||||++|||||+|+++..++.... .|..+ ....
T Consensus 377 ---~-----~~~~~~y~Gg~V~eP~~G~y~~-v~~lDF~SLYPSIi~~~nl~~~t~~~~~~~~~~~---~~~~~~~f~~~ 444 (775)
T 1qht_A 377 ---L-----ARRRGGYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNREGCKEYDV---APEVGHKFCKD 444 (775)
T ss_dssp ---H-----HHTTTCCCCCCBCCCCCSCEEE-EEEEECSSHHHHHHHHTTCSTTTBTCTTCSCEEE---CTTTCCEEECS
T ss_pred ---h-----hccccccCCceEecccCCcccc-eeecchhcccHHHHHhcCCCcccccccccccccc---CCccCcccccc
Confidence 0 0115689999999999999997 9999999999999999999999998766532211 12111 1135
Q ss_pred cCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHH
Q psy6283 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638 (1030)
Q Consensus 559 ~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~ 638 (1030)
+.||+|.+|..|++.|+++|+.|++ ..+|.++.+||.+|+|+|++|||+|||+|++++||||+++|++||++||++|+.
T Consensus 445 ~~g~lp~~l~~l~~~R~~~K~~~k~-~~~~~~~~~~d~~Q~A~Ki~~NS~YG~~g~~~~r~~~~~~A~~vT~~Gr~~i~~ 523 (775)
T 1qht_A 445 FPGFIPSLLGDLLEERQKIKRKMKA-TVDPLEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAESVTAWGREYIEM 523 (775)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHHTTHHHHHHCTTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHhhheeeccccccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999998 689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hhccceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhccc-ceeEEeecchhhhhhhcccccceEEeeeecC
Q psy6283 639 TKSLV-ENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISKLS 716 (1030)
Q Consensus 639 tkelv-e~~g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~-~~leLe~E~vf~~llll~KKrYa~l~~~~~~ 716 (1030)
|++.+ +++|++|||||||||||.++..+.+++.++|.++++.||+.+ .+++||+|++|.+++|++|||||++. .
T Consensus 524 ~~~~i~~~~g~~ViygDTDSi~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~le~e~~y~~~~l~~KKrYa~~~----~ 599 (775)
T 1qht_A 524 VIRELEEKFGFKVLYADTDGLHATIPGADAETVKKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVID----E 599 (775)
T ss_dssp HHHHHHHHHCCEEEEEETTEEEEECTTCCHHHHHHHHHHHHHHHC------CCCEEEEEEEEEEEEETTEEEEEC----T
T ss_pred HHHHHHHhcCCeEEEeeccceEEEcCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEeEEeeeheecccCeEEEEc----c
Confidence 98764 567999999999999999999899999999999999999987 48999999999999999999999872 4
Q ss_pred CCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHhhcc
Q psy6283 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796 (1030)
Q Consensus 717 dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvItk~L 796 (1030)
+|+ +++||+++||||||+|++++++.+|+.||.++ +++++++ ++.++..+|++|.+|+++|+|+++|
T Consensus 600 ~g~----l~~KG~e~vRrd~~~l~k~~~~~vl~~ll~~~-----d~~~~~~----~v~~~~~~l~~~~~~~~~lvi~k~l 666 (775)
T 1qht_A 600 EGK----ITTRGLEIVRRDWSEIAKETQARVLEAILKHG-----DVEEAVR----IVKEVTEKLSKYEVPPEKLVIHEQI 666 (775)
T ss_dssp TCC----CEEESCSCCCSCCCHHHHHHHHHHHHHHHHHC-----CHHHHHH----HHHHTC------------CCBCCBC
T ss_pred CCe----EEEEeeEEEeCCcHHHHHHHHHHHHHHHhcCC-----CHHHHHH----HHHHHHHHHHcCCCCHHHhhhhHHh
Confidence 564 47999999999999999999999999999998 7665554 5556667889999999999999999
Q ss_pred cCCCCC--CcchHHHHHHHHHHcCCc
Q psy6283 797 TKAPEG--GKVCITQIRLSRNRRGRR 820 (1030)
Q Consensus 797 sK~p~~--~~~pHV~vA~r~~~~g~~ 820 (1030)
+|++++ ..+|||+||++|+++|..
T Consensus 667 sk~~~~Y~~~~phv~~A~rl~~~g~~ 692 (775)
T 1qht_A 667 TRDLRDYKATGPHVAVAKRLAARGVK 692 (775)
T ss_dssp --------CCHHHHHHHHHHHTTTCC
T ss_pred cCCHHHcCCCChHHHHHHHHHhcCCC
Confidence 999988 779999999999888753
No 4
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=100.00 E-value=4.5e-74 Score=703.03 Aligned_cols=364 Identities=25% Similarity=0.403 Sum_probs=320.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCc
Q psy6283 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGE 480 (1030)
Q Consensus 401 Gl~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~ 480 (1030)
+...|+.||++||.++++|+.+++++|++.++|+++|++|+++ ||++..+++++|+++|+.|||+|++...
T Consensus 327 ~~~~L~~Y~l~Da~L~~~L~~kl~ll~~~~elarl~Gi~~~~~--ggs~~~~~~lll~~~~~~~~i~P~~~~~------- 397 (786)
T 3k59_A 327 DKPALATYNLKNCELVTQIFHKTEIMPFLLERATVNGLPVDRH--GGSVAAFGHLYFPRMHRAGYVAPNLGEV------- 397 (786)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCSCTTCC--CCHHHHHHHHHHHHHHHTTBCCCCTTSS-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHc--ccHHHHHHHHHHHHHHHcCeeCCCcccc-------
Confidence 4678999999999999999999999999999999999999995 7888899999999999999999987531
Q ss_pred cccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCC---CccccccccCCCCCcc
Q psy6283 481 ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML---QDSDITTLCEYLPEHQ 557 (1030)
Q Consensus 481 d~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~---d~~~i~~~~p~~p~~~ 557 (1030)
...+|+||+|++|++|+|++ |++|||+|||||||++|||||+|++...+ +.+.+.+ |.-..-.
T Consensus 398 -----------~~~~y~Gg~V~eP~~G~y~~-V~~lDF~SLYPSIi~~~ni~~~t~~~~~~~~~~~~~~~~--~~g~~f~ 463 (786)
T 3k59_A 398 -----------PPHASPGGYVMDSRPGLYDS-VLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEG--FLDAWFS 463 (786)
T ss_dssp -----------CCCCCCCCCBCCCCCEEESC-EEEEEETTHHHHHHHHHCCCHHHHHHHHHSCSTTTEEEC--STTCEEE
T ss_pred -----------ccccCCCcEEeeccCCceee-EEEEEhhhccHHHHHHhCCCccccccccCCccccccccC--CCCceEe
Confidence 13579999999999999987 99999999999999999999999864321 1222211 1100012
Q ss_pred ccCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHH
Q psy6283 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637 (1030)
Q Consensus 558 ~~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~ 637 (1030)
.++||||.+|..|++.|+++|+.|++ .+|+|+|++|||+|||+|+++++|||+++|++||++||++|+
T Consensus 464 ~~~g~lp~~l~~l~~~R~~~K~~~~~------------~~q~AlKi~~Ns~YG~~G~~~~~~~~~~~A~~iT~~GR~~l~ 531 (786)
T 3k59_A 464 REKHCLPEIVTNIWHGRDEAKRQGNK------------PLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMR 531 (786)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHGGGSTTSTTCCHHHHHHHHHHHHHHHH
T ss_pred ecCCchHHHHHHHHHHHHHHHHhcch------------HHHHhhheeeecccccccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 37999999999999999999998753 479999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccceeEEecCcceeeecCC-CCHHHHHHHHHHHHHHHhccc----------ceeEEeecchhhhhhhc----
Q psy6283 638 NTKSLVENLNYEVIYGDTDSLMISCNV-NDYDSVFKIGNQIKSECNKLY----------KQLELDIDGVYKYMLLL---- 702 (1030)
Q Consensus 638 ~tkelve~~g~~VIYGDTDSI~V~~~~-~d~eea~~ig~~i~~~Vn~~~----------~~leLe~E~vf~~llll---- 702 (1030)
.|+++++++|++|||||||||||+++. .+.++++++|+++++.||+.| .+|+||||++|.+|||+
T Consensus 532 ~~~~~ie~~g~~ViYGDTDSvfv~~~~~~~~~~~~~~g~~l~~~vn~~~~~~~~~~~l~~~i~Le~Ekvy~~~ll~t~rg 611 (786)
T 3k59_A 532 QTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRG 611 (786)
T ss_dssp HHHHHHHHTTCEEEECBSSEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCEEEEEEESEEEECBCTT
T ss_pred HHHHHHHHcCCEEEEEeccceEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCceEEEEEEeEhhheehhccC
Confidence 999999999999999999999999997 689999999999999999865 27999999999999986
Q ss_pred ----ccccceEEeeeecCCCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHH
Q psy6283 703 ----KKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778 (1030)
Q Consensus 703 ----~KKrYa~l~~~~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~ 778 (1030)
+||||||+.++. +| +++++||+++||||||+|++++++.+|+.||.++ ++ ++++.+++.
T Consensus 612 ~~~~~KKRYag~~~~~--~~---~~~~~KGle~vRrD~~~l~k~~~~~~l~~il~~~-----~v-------~~~~~~~~~ 674 (786)
T 3k59_A 612 ADTGSKKRYAGLIQEG--DK---QRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNE-----PY-------QEYVRETID 674 (786)
T ss_dssp SSSBCSSCEEEEEEET--TE---EEEEEESSGGGCTTSCHHHHHHHHHHHHHHHTTC-----CC-------HHHHHHHHH
T ss_pred CcccccceEEEEEecC--CC---CEEEEEeeEEEcCCccHHHHHHHHHHHHHHHcCC-----CH-------HHHHHHHHH
Confidence 599999998763 33 4678999999999999999999999999999988 43 467778889
Q ss_pred HhhCCCcChhhhHHhhcccCCCCC---CcchHHHHHHHHHHc
Q psy6283 779 DLDNGFVPLTLLEITKQLTKAPEG---GKVCITQIRLSRNRR 817 (1030)
Q Consensus 779 ~l~~g~vpl~~lvItk~LsK~p~~---~~~pHV~vA~r~~~~ 817 (1030)
+|++|++| ++|+|+|+|+|++++ +++|||+||++|.+.
T Consensus 675 ~l~~g~~~-~~lv~~k~l~k~~~~Y~~~~~phv~aa~~~~~~ 715 (786)
T 3k59_A 675 KLMAGELD-ARLVYRKRLRRPLSEYQRNVPPHVRAARLADEE 715 (786)
T ss_dssp HHHTTCCG-GGCCEEEEECSCGGGCCSCCCHHHHHHHHHHHH
T ss_pred HHHcCCCC-hheEEEeeecCChHHcccCCcHHHHHHHHHHHh
Confidence 99999999 899999999999887 568999999998654
No 5
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=100.00 E-value=3.7e-71 Score=684.97 Aligned_cols=396 Identities=22% Similarity=0.314 Sum_probs=279.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCC
Q psy6283 401 GIVEFIKFTMLHSSYIIKIMC--ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKE 478 (1030)
Q Consensus 401 Gl~~lv~Y~~~Da~l~~~L~~--kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~ 478 (1030)
++..++.||++||.++++|+. +..+++++.+|++++|+++..++.+|.+.+++++||+++++.||++|++........
T Consensus 367 ~~~~l~~Ycl~Da~lt~~L~~~~~~~~~~~~~~la~i~~lp~~~l~r~~~~~~v~slll~~~~~~~~i~P~~~~~~~~~~ 446 (847)
T 1s5j_A 367 DVEKLIEYNFRDAEITLQLTTFNNDLTMKLIVLFSRISRLGIEELTRTEISTWVKNLYYWEHRKRNWLIPLKEEILAKSS 446 (847)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHCCCHHHHTTSCHHHHHHHHHHHHHHHHTBCCCCHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhCCCchhhcccchhhhhHHHHHHHHHhcCcccCCchhhhhhcc
Confidence 379999999999999999953 456899999999999999999887788889999999999999999999753211000
Q ss_pred CccccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCc-cccccccCCCCC--
Q psy6283 479 GEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQD-SDITTLCEYLPE-- 555 (1030)
Q Consensus 479 ~~d~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~-~~i~~~~p~~p~-- 555 (1030)
.. ......+..+|+||+|++|++|+|++ |++|||+|||||||++|||||+|++...|.. .......|..+.
T Consensus 447 ~~-----~~~~~~~~~~y~Gg~V~eP~~G~y~~-v~~lDf~SLYPSIi~~~Nl~~~T~~~~~~~~~~~~~~~~~~~~~~~ 520 (847)
T 1s5j_A 447 NI-----RTSALIKGKGYKGAVVIDPPAGIFFN-ITVLDFASLYPSIIRTWNLSYETVDIQQCKKPYEVKDETGEVLHIV 520 (847)
T ss_dssp C-------------------CCCCCCCSEEEEE-EEEEEETTHHHHHHHHTTCCTTTBSCSCCSSCCEECCSSSCCCEEB
T ss_pred cc-----cchhccccccccCCcccCCCCCcccc-eeEeehhhhchHHHHHcCCCcceeccccccccccccccCCCCceeE
Confidence 00 00011234689999999999999997 9999999999999999999999998654311 100001132211
Q ss_pred ccccCCcchHHHHHHHHHHHHHHHHhcC-CCCChHHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHH
Q psy6283 556 HQVDTGILPSEIKKLVESRRQVKALMKQ-PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGRE 634 (1030)
Q Consensus 556 ~~~~~GIlP~iL~~Ll~~R~~vKk~mk~-~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~ 634 (1030)
...+.||+|.+|..|++.|+.+|+.|++ ...+|.++.+||.+|+|+|++|||+|||+|+++++|||+++|++||++||+
T Consensus 521 ~~~~~g~~p~~l~~l~~~R~~~kk~~~k~~~~~~~~~~~~d~~Q~AlKi~~NS~YG~~g~~~~~~~~~~~A~~iT~~GR~ 600 (847)
T 1s5j_A 521 CMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINATYGVFGAETFPLYAPRVAESVTALGRY 600 (847)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHTHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSTTCCHHHHHHHHHHHHH
T ss_pred eccCCcccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHHHHH
Confidence 1358999999999999999998877644 356888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccceeEEecCcceeeecCCCCHHHHHHHHHHHHHHHhcccceeEEeecchhhhhhhc-ccccceEEeee
Q psy6283 635 ILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLL-KKKKYAALSIS 713 (1030)
Q Consensus 635 iL~~tkelve~~g~~VIYGDTDSI~V~~~~~d~eea~~ig~~i~~~Vn~~~~~leLe~E~vf~~llll-~KKrYa~l~~~ 713 (1030)
+|+.|+++++++|++|||||||||||.++. .+.+ .+|.+.|++.+ +++|++|++|.+|+|. +||||||+.
T Consensus 601 ~l~~t~~~ve~~g~~ViYGDTDSi~v~~~~--~~~~----~~~~~~v~~~~-~i~le~e~vy~~~ll~~~KKrYag~~-- 671 (847)
T 1s5j_A 601 VITSTVKKAREEGLTVLYGDTDSLFLLNPP--KNSL----ENIIKWVKTTF-NLDLEVDKTYKFVAFSGLKKNYFGVY-- 671 (847)
T ss_dssp HHHHHHHHHHTTTCCEEEEETTEEEEESCC--HHHH----HHHHHHHHHHS-SCCEEEEEEEEEEEEC----CEEEEC--
T ss_pred HHHHHHHHHHhCCcEEecCCCcceEEecCc--HHHH----HHHHHHHHhhc-CccEEecchhHhHccchhhCcEEEEe--
Confidence 999999999999999999999999999764 2333 34556677666 5999999999998887 899999984
Q ss_pred ecCCCceeeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHHhhCCCcChhhhHHh
Q psy6283 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEIT 793 (1030)
Q Consensus 714 ~~~dG~~~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~l~~~~~~l~~g~vpl~~lvIt 793 (1030)
.+|+ +++||+++||||||+|++++++.+|+.||.+.+.. +.+.+++.|++++.++..+|++|.+|+++|+|+
T Consensus 672 --~~g~----~~~KG~e~vRrd~~~l~k~~~~~~l~~ll~~~~~~--~~~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~ 743 (847)
T 1s5j_A 672 --QDGK----VDIKGMLVKKRNTPEFVKKVFNEVKELMISINSPN--DVKEIKRKIVDVVKGSYEKLKNKGYNLDELAFK 743 (847)
T ss_dssp --SSSC----CCEESCCC--------CCSHHHHHHHHHHTTCCSC--CTTHHHHHHHHHHHHHHCTTC------------
T ss_pred --cCCe----eeeeeeEEeeCCcHHHHHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHHHHHHHcCCCCHHHEEEE
Confidence 3554 58999999999999999999999999999976222 455688999999999999999999999999999
Q ss_pred hcccCCCCC---CcchHHHHHHHHHHcCC
Q psy6283 794 KQLTKAPEG---GKVCITQIRLSRNRRGR 819 (1030)
Q Consensus 794 k~LsK~p~~---~~~pHV~vA~r~~~~g~ 819 (1030)
++|+|++++ +.+|||++|++|++.|.
T Consensus 744 k~l~k~~~~Y~~~~~~hv~~A~~~~~~g~ 772 (847)
T 1s5j_A 744 VMLSKPLDAYKKNTPQHVKAALQLRPFGV 772 (847)
T ss_dssp -----------------------------
T ss_pred EEeccChhHhccCCCHHHHHHHHHHhcCC
Confidence 999999877 56899999999988763
No 6
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=100.00 E-value=9.8e-69 Score=659.40 Aligned_cols=383 Identities=19% Similarity=0.234 Sum_probs=314.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCccccCcCCCcc
Q psy6283 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEE 481 (1030)
Q Consensus 402 l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~~kk~~~~~d 481 (1030)
+..|+.||++||.++++|+.+++++|++.++|+++|++|.++++ +...+|++|+|++++.||++|++..
T Consensus 317 ~~~L~~Ycl~Da~Lt~~L~~Kl~li~~~~elArl~Gi~~~~vls--q~~v~e~LLlr~a~~~~~iiP~~~~--------- 385 (903)
T 3qex_A 317 HQRYISYNIIAVYRVLQIDAKRQFINLSLDMGYYAKIQIQSVFS--PIKTWDAIIFNSLKEQNKVIPQGRS--------- 385 (903)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSCGGGGGC--HHHHHHHHHHHHHHTTTEECCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHhcc--hHHHHHHHHHHHHHHCCEeccCCcc---------
Confidence 68899999999999999999999999999999999999999984 4555699999999999999998752
Q ss_pred ccccccCCCCCCccccCceeeccccccccceEEEeeccccChhHHHHhccccccccccCCCcc---------cccc----
Q psy6283 482 TGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS---------DITT---- 548 (1030)
Q Consensus 482 ~~~~~~~~~~~~~~Y~GGlVleP~~GlY~~~V~vLDFnSLYPSII~~~NIc~tTv~~~~~d~~---------~i~~---- 548 (1030)
....+|.||+|++|.+|+|++ |++|||+|||||||++|||||+|+++..+... .++.
T Consensus 386 ---------~~~~~y~Gg~V~~p~~G~y~~-v~~lDf~SLYPsIi~~~ni~~~T~~~~~~~~~~~~~i~~~~~~p~~~~~ 455 (903)
T 3qex_A 386 ---------HPVQPYPGAFVKEPIPNRYKY-VMSFDLTSLYPSIIRQVNISPETIAGTFKVAPLHDYINAVAERPSDVYS 455 (903)
T ss_dssp ---------CCCCCCCCCCBCCCCCEECSS-EEEEEETTHHHHHHHHHTCCGGGEEEECCCCCHHHHHTTCSCCSCSSSE
T ss_pred ---------cccCCCCCCEEecccCCceEE-EEEEehhhhchHHHHHhCcChhhccccccccchhcccccccCCCCCcee
Confidence 124679999999999999986 99999999999999999999999987643110 0000
Q ss_pred ccCC-CCCccccCCcchHHHHHHHHHHHHHHHHhcCCC-----------------CCh----------------------
Q psy6283 549 LCEY-LPEHQVDTGILPSEIKKLVESRRQVKALMKQPN-----------------LSS---------------------- 588 (1030)
Q Consensus 549 ~~p~-~p~~~~~~GIlP~iL~~Ll~~R~~vKk~mk~~~-----------------~~~---------------------- 588 (1030)
.+|. ......+.||||.+|+.|++.|+++|+.|++.+ .||
T Consensus 456 ~~p~g~~F~k~~~GiLP~iL~~Ll~~R~~~K~~mk~~~~~~~~~k~~L~~~~~~~~dp~~~~~~~~~~~~~~~~~~~~~~ 535 (903)
T 3qex_A 456 CSPNGMMYYKDRDGVVPTEITKVFNQRKEHKGYMLAAQRNGEIIKEALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSA 535 (903)
T ss_dssp ECTTSEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCCCCCCCTTSCCCHHHHHHHTTCCH
T ss_pred eCCCCceEecCCCcchHHHHHHHHHHHHHHHHHHhhccccchhhhhhcccccccccCccccccccccchhhhhhhhccch
Confidence 1111 001135899999999999999999999997531 233
Q ss_pred -----------HHHHhhHHHHHHhccccccccccCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHhhhc--------c-c
Q psy6283 589 -----------DLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL--------N-Y 648 (1030)
Q Consensus 589 -----------~~~~~~d~rQ~AlKl~aNS~YG~lG~~~srfy~~~lA~~IT~~GR~iL~~tkelve~~--------g-~ 648 (1030)
.++.+||++|+|+||+|||+|||||++++||||.++|++||++||++|+.|++.++++ | +
T Consensus 536 ~~L~~~l~~~~~~~~~~d~rQ~AlKi~~NS~YG~~G~~~~r~~~~~~A~sIT~~GR~~i~~~~~~v~~~~~~~~~~~~~~ 615 (903)
T 3qex_A 536 KSLNEMLFRAQRTEVAGMTAQINRKALINGLAGALGNVWFRYYDLRNATAITTFGQMALQWIERKVNEYLNEVCGTEGEA 615 (903)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCe
Confidence 3577899999999999999999999999999999999999999999999999988863 4 5
Q ss_pred eeEEecCcceeeecCCCC-H--HHHHHHHHHHHHHHhc----------------------cc-ceeEEeecchhhh----
Q psy6283 649 EVIYGDTDSLMISCNVND-Y--DSVFKIGNQIKSECNK----------------------LY-KQLELDIDGVYKY---- 698 (1030)
Q Consensus 649 ~VIYGDTDSI~V~~~~~d-~--eea~~ig~~i~~~Vn~----------------------~~-~~leLe~E~vf~~---- 698 (1030)
.|||||||||||+++... . .+++++|+++.+.||+ .| .++.|++|+||.+
T Consensus 616 ~VIYGDTDSvfV~~~~~~~~~~~~~f~~g~~l~~~i~~~~~~~~~~~i~~~~~el~e~~~~~~~p~~l~~E~i~~~~~gs 695 (903)
T 3qex_A 616 FVLYGDTDSIYVSADKIIDKVGESKFRDTNHWVDFLDKFARERMEPAIDRGFREMCEYMNNKQHLMFMDREAIAGPPLGS 695 (903)
T ss_dssp CEEEEETTEEEEECHHHHHHHCGGGCSSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECCCTTS
T ss_pred EEEEEeCCceEEEeCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccCCcceeeeeeeeecCcccc
Confidence 899999999999987531 1 1223334433333222 23 4799999999999
Q ss_pred ----hhhcccccceEEeeeecCCCce--eeeceeeeeeeeeCChHHHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHH
Q psy6283 699 ----MLLLKKKKYAALSISKLSNGKM--ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772 (1030)
Q Consensus 699 ----llll~KKrYa~l~~~~~~dG~~--~~~~e~KGle~vRRD~~~l~k~~~~~vL~~IL~~~~~~~~~~e~~v~~I~~~ 772 (1030)
++|++||||||+.++.+ |+- .+++++||+++||||||+++++++..+|+.||.+. + +.++++
T Consensus 696 ~~~~~~l~~KKRYag~~~~~~--g~~~~~~kl~~kGlE~vRrd~~~~~k~~~~~~l~~ll~~~-----~-----~~~~~y 763 (903)
T 3qex_A 696 KGIGGFWTGKKRYALNVWDME--GTRYAEPKLKIMGLETQKSSTPKAVQKALKECIRRMLQEG-----E-----ESLQEY 763 (903)
T ss_dssp CCCCEEEEETTEEEEEEEEET--TEEEEEEEEEEESSGGGCTTSCHHHHHHHHHHHHHHHHTC-----H-----HHHHHH
T ss_pred cccchheeeccceEEEEeecC--CcccCCCeeEEeceEEEeccchHHHHHHHHHHHHHHHhcC-----c-----HHHHHH
Confidence 99999999999998753 432 46789999999999999999999999999999986 2 567788
Q ss_pred HHHHHHHhhCCCcChhhhHHhhcccCCCCC---------CcchHHHHHHHHHHcCCc
Q psy6283 773 MKKIRTDLDNGFVPLTLLEITKQLTKAPEG---------GKVCITQIRLSRNRRGRR 820 (1030)
Q Consensus 773 l~~~~~~l~~g~vpl~~lvItk~LsK~p~~---------~~~pHV~vA~r~~~~g~~ 820 (1030)
+.++..++++ +++++|+|++++ ++++. ...|||..|+..++..++
T Consensus 764 v~~~~~~~~~--~~~~di~~~~~~-~~l~~Y~~~~~~~~~~p~hv~ga~~~n~~~~~ 817 (903)
T 3qex_A 764 FKEFEKEFRQ--LNYISIASVSSA-NNIAKYDVGGFPGPKCPFHIRGILTYNRAIKG 817 (903)
T ss_dssp HHHHHHHGGG--SCGGGGCEEEEC-CCTGGGEETTEECTTCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHc--CCHHHEEeeccc-CCHHHhCCCCCCCCCCchhHHHHHHHHHHhhc
Confidence 8888889988 678999999999 56665 245899999887776655
No 7
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=99.88 E-value=1.5e-23 Score=250.14 Aligned_cols=142 Identities=25% Similarity=0.311 Sum_probs=102.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHHhcCCCCChHHHHhhHHHHHHhccccccccccCCCCCC--------------CCC----
Q psy6283 559 DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS--------------RFF---- 620 (1030)
Q Consensus 559 ~~GIlP~iL~~Ll~~R~~vKk~mk~~~~~~~~~~~~d~rQ~AlKl~aNS~YG~lG~~~s--------------rfy---- 620 (1030)
..|+++..+..|++.|.+.+ + ..++++|+++||+||.+|..-. +|+
T Consensus 356 ~~~~f~~~i~~l~~~k~~~~---------~-------~~~~~~Kl~lNS~YGk~g~~~~~~~~~~~~~~~~~~~f~~~e~ 419 (575)
T 2py5_A 356 TTGLFKDFIDKWTYIKTTSE---------G-------AIKQLAKLMLNSLYGKFASNPDVTGKVPYLKENGALGFRLGEE 419 (575)
T ss_dssp ESCTTHHHHHHHHHHHHHCC---------H-------HHHHHHHHHHHSSHHHHTCCSBCCBEEEEECTTSSEEEEECCC
T ss_pred CCCchHHHHHHHHHHhhhCc---------H-------HHHHHHHHHHHhHhhhhccCccccceEEEecccceeeeecCcc
Confidence 47999999999999887622 1 2334779999999999998711 222
Q ss_pred ------CHHHHHHHHHHhHHHHHHHHHHhhhccceeEEecCcceeeec-CCCCHHHHHHHHHHHHHHH-hcccceeEEee
Q psy6283 621 ------AQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC-NVNDYDSVFKIGNQIKSEC-NKLYKQLELDI 692 (1030)
Q Consensus 621 ------~~~lA~~IT~~GR~iL~~tkelve~~g~~VIYGDTDSI~V~~-~~~d~eea~~ig~~i~~~V-n~~~~~leLe~ 692 (1030)
+.++|++||+.||.+|..+...+ |..|+||||||||+.. +..+ . +.+.+ +.... .++.
T Consensus 420 ~~~~p~~v~ia~~iTa~aR~~m~~~~~~~---~~~v~Y~DTDSi~~~~~~~~~---~------l~~~~~~~~lG--~~~~ 485 (575)
T 2py5_A 420 ETKDPVYTPMGVFITAWARYTTITAAQAC---YDRIIYCDTDSIHLTGTEIPD---V------IKDIVDPKKLG--YWAH 485 (575)
T ss_dssp CBCCCCCHHHHHHHHHHHHHHHHHHHHHT---TTTEEEEETTEEEEESSSCCG---G------GGGGBCSSSTT--SEEE
T ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHc---CCcEEEecCCcceeccccchh---h------hhhcccccchh--chhh
Confidence 25699999999999998877655 9999999999999985 3221 1 11112 22222 3445
Q ss_pred cchhhhhhhcccccceEEeeeecCCCce-----------eeeceeeeee
Q psy6283 693 DGVYKYMLLLKKKKYAALSISKLSNGKM-----------ICSQEIKGVD 730 (1030)
Q Consensus 693 E~vf~~llll~KKrYa~l~~~~~~dG~~-----------~~~~e~KGle 730 (1030)
|.++..++++++|+||+..+..+.+|++ ...+.+||+.
T Consensus 486 E~~~~~~~f~~~K~Y~~~~~~~~~~g~i~~~~~~~~~~~~~~~k~KGi~ 534 (575)
T 2py5_A 486 ESTFKRAKYLRQKTYIQDIYMKEVDGKLVEGSPDDYTDIKFSVKCAGMT 534 (575)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEETTEEEECBTTBCSEEEEEEEETTCC
T ss_pred hhheeeEEEeeCceEeEeecccCCCCcEeecccccccCcceEEEcCCCC
Confidence 5688999999999999986544446776 4467889984
No 8
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=98.67 E-value=2.2e-08 Score=114.40 Aligned_cols=69 Identities=9% Similarity=0.198 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCcchhhccCchhHHHHHHHHHHHhhcCeeccCCcc
Q psy6283 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQY 472 (1030)
Q Consensus 402 l~~lv~Y~~~Da~l~~~L~~kl~vlpl~~~lt~iaG~~~srtl~~gr~~r~E~lLL~~~~~~~yivPdk~~ 472 (1030)
+..++.||++||.++++|+.+++++|++.++|+++|++|++++ | +..-.|++|||++|++|||+|++..
T Consensus 314 ~~~l~~Y~~~D~~l~~~L~~kl~~l~~~~ela~i~g~~~~~vl-~-q~~~~~~lll~~~~~~~~i~P~~~~ 382 (388)
T 1noy_A 314 HQRYISYNIIDVESVQAIDKIRGFIDLVLSMSYYAKMPFSGVM-S-PIKTWDAIIFNSLKGEHKVIPQQGS 382 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCGGGGG-C-HHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHChHHHHHHHhCccCCCHHHhC-c-cHHHHHHHHHHHHHhCCEEcccCCc
Confidence 6889999999999999999999999999999999999999999 3 3333488999999999999999864
No 9
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=68.33 E-value=7.8 Score=48.47 Aligned_cols=131 Identities=11% Similarity=0.081 Sum_probs=79.2
Q ss_pred CceEEEEEEeccccccCCCCEEEEEeeeeecCCCceeEEEEEEcceeeeEEEecCCCCCCCCCcccHHHHHHHHHHHHHh
Q psy6283 209 KKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQ 288 (1030)
Q Consensus 209 ~~~l~fy~~d~~e~~~~~~g~~~lfGkv~~~~~~~~~Sccv~v~~~~R~~~~lpr~~~~~~~~~~~~~~v~~e~~~~~~~ 288 (1030)
+....+|.||+.-+.....-.|.|||. +..-.|+|+.|.|- |..|+++-+. + ++ .++.+++..
T Consensus 11 ~~~~~~~ll~~~y~~~~~~~vi~l~~~-----~~~~~~~~~~v~gf-~pYfyv~~~~----~------~~-~~~~~~~~~ 73 (847)
T 1s5j_A 11 QENKIYFLLQVDYDGKKGKAVCKLFDK-----ETQKIYALYDNTGH-KPYFLVDLEP----D------KV-GKIPKIVRD 73 (847)
T ss_dssp CTTCEEEEEEEEEETTTTEEEEEEEET-----TTTEEEEEECCSCC-CCEEEESSCH----H------HH-TTCHHHHTC
T ss_pred ccCCeEEEEeeeeecCCCCeEEEEEEe-----eCCccEEEEEcCCC-ceEEEEECCc----H------HH-HHHHHHhcc
Confidence 355679999998875222234999993 12336666666555 4444444221 0 11 222233333
Q ss_pred cCCcceEEeeeeeccccCCCCCCCCccEEEEEecc--CCCCCCCCCcCCceeeecccCchhhhhHHhhhhccCCeEEEec
Q psy6283 289 YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSA--KCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFP 366 (1030)
Q Consensus 289 ~~i~~~~~k~v~~~yaf~~~~vp~~~~~lkv~y~~--~~p~~~~~~~g~tfs~vfG~~~~~~E~f~l~~~i~Gp~wl~i~ 366 (1030)
.. -..+..|+|.--+. .....|+||.... ..|.+-..+. .+|-++-....+|++.++|.|.+|+.+.
T Consensus 74 ~~--~~~ve~v~k~~~~~----~~~~~~~ki~~~~p~~v~~~r~~l~-----~~~EadI~~~~RfliD~~i~~~~w~~~~ 142 (847)
T 1s5j_A 74 PS--FDHIETVSKIDPYT----WNKFKLTKIVVRDPLAVRRLRNDVP-----KAYEAHIKYFNNYMYDIGLIPGMPYVVK 142 (847)
T ss_dssp TT--EEEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHTTSSS-----CEESCSSCHHHHHHHHHTCCTTSEEEEE
T ss_pred CC--ceEEEEEEeEeccC----CCceeEEEEEEeCHHHHHHHHHHhh-----hheecCCchHhhhheecCccceEEEEEe
Confidence 23 36677887753332 2346799987642 2232222222 7899999999999999999999999886
Q ss_pred C
Q psy6283 367 E 367 (1030)
Q Consensus 367 ~ 367 (1030)
.
T Consensus 143 ~ 143 (847)
T 1s5j_A 143 N 143 (847)
T ss_dssp T
T ss_pred c
Confidence 5
No 10
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=54.31 E-value=4.8 Score=49.94 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=73.5
Q ss_pred EEEEEEeccccccCCCCEEEEEeeeeecCCCceeEEEEEEcceeeeEEEecCCCCCCCCCcccHHHHHHHHHHHHHhcCC
Q psy6283 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKI 291 (1030)
Q Consensus 212 l~fy~~d~~e~~~~~~g~~~lfGkv~~~~~~~~~Sccv~v~~~~R~~~~lpr~~~~~~~~~~~~~~v~~e~~~~~~~~~i 291 (1030)
.+=|.||.+-......-.|.|||+-. .+ .+||.|.+ +|..|++|-+.. ..+..++.. .
T Consensus 6 ~~g~~l~~~~~~~~~g~~i~~~g~t~---~G---~~~v~v~~-~~~yfy~~~~~~-------------~~~~~~~~~--~ 63 (786)
T 3k59_A 6 QAGFILTRHWRDTPQGTEVSFWLATD---NG---PLQVTLAP-QESVAFIPADQV-------------PRAQHILQG--E 63 (786)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEET---TE---EEEEECSC-CCEEEEEEGGGH-------------HHHHHHTTT--C
T ss_pred cccEEEeeEEEEeCCceEEEEEEEcC---CC---CEEEEEcC-CceEEEEECCcH-------------HHHHHHHhc--C
Confidence 34456666522211344677999853 22 39999976 999999987621 112333332 3
Q ss_pred cceEEeeeeeccccCCCCCCCCccEEEEEec--cCCCCCCCCCcCCceeeecccCchhhhhHHhhhhccCCeEEEec
Q psy6283 292 LDFKSRKIEKKYAFNLPGVPDLSEYLEVRYS--AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFP 366 (1030)
Q Consensus 292 ~~~~~k~v~~~yaf~~~~vp~~~~~lkv~y~--~~~p~~~~~~~g~tfs~vfG~~~~~~E~f~l~~~i~Gp~wl~i~ 366 (1030)
..+..+++..+ .|.. ..+++|..+ ...+.+-..+.-..+ .+|.++-....+|++.+.|.|..|+...
T Consensus 64 ~~~~~~~~~l~-~~~~------~~~~~i~~~~~~~~~~~r~~l~~~g~-~v~EadI~~~~RfliD~~i~~~~w~~~~ 132 (786)
T 3k59_A 64 QGFRLTPLALK-DFHR------QPVYGLYCRAHRQLMNYEKRLREGGV-TVYEADVRPPERYLMERFITSPVWVEGD 132 (786)
T ss_dssp CSEEEEEEEEE-CTTC------CEEEEEEESSHHHHHHHHHHHHHTTC-CCBSTTCCHHHHHHHHTTCSSEEEEEEE
T ss_pred CceEEEEeeee-eecC------ceEEEEEECCHHHHHHHHHHHHHcCC-ceeeccCChhheeeEecCcccceEEEEe
Confidence 35777776533 4431 135555432 111221111111112 7999999999999999999999998754
Done!