Your job contains 1 sequence.
>psy6283
MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA
GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLIDKTNKFAAFQKLKDLKGQGVKHK
YEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDIEDVPQKKEK
HDKRKKNKNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKE
NNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIE
KKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGP
SWLEFPEAEKFPSRISWCKYEVQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIM
CELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGE
ETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRM
LQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKA
LKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMI
SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKM
ICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDL
DNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGR
RRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRR
RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE
EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE
KKRRRIRRKR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy6283
(1030 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q9DE46 - symbol:pola1 "DNA polymerase alpha cat... 1106 8.9e-182 3
UNIPROTKB|A6NMQ1 - symbol:POLA1 "DNA polymerase" species:... 1087 3.8e-179 3
UNIPROTKB|P09884 - symbol:POLA1 "DNA polymerase alpha cat... 1087 3.8e-179 3
ZFIN|ZDB-GENE-030114-9 - symbol:pola1 "polymerase (DNA di... 1115 8.0e-179 3
UNIPROTKB|Q59J88 - symbol:Q59J88 "DNA polymerase" species... 1117 5.6e-178 3
UNIPROTKB|F6Y1C9 - symbol:POLA1 "DNA polymerase" species:... 1083 3.0e-177 3
MGI|MGI:99660 - symbol:Pola1 "polymerase (DNA directed), ... 1074 5.0e-177 3
UNIPROTKB|Q59J89 - symbol:Q59J89 "DNA polymerase" species... 1089 2.7e-176 3
UNIPROTKB|E2QVU2 - symbol:POLA1 "Uncharacterized protein"... 1074 2.7e-176 3
UNIPROTKB|F1NR19 - symbol:POLA1 "DNA polymerase" species:... 1089 6.4e-175 3
UNIPROTKB|E1BJF4 - symbol:POLA1 "DNA polymerase" species:... 1040 1.3e-172 3
UNIPROTKB|Q59J90 - symbol:Q59J90 "DNA polymerase" species... 1087 6.5e-171 3
RGD|621816 - symbol:Pola1 "polymerase (DNA directed), alp... 1084 1.1e-163 2
UNIPROTKB|O89042 - symbol:Pola1 "DNA polymerase alpha cat... 1084 1.1e-163 2
FB|FBgn0259113 - symbol:DNApol-alpha180 "DNA polymerase a... 1122 2.6e-157 3
UNIPROTKB|Q9NAH1 - symbol:Y47D3A.29 "DNA polymerase" spec... 891 1.8e-131 3
WB|WBGene00012936 - symbol:Y47D3A.29a species:6239 "Caeno... 891 2.5e-131 3
UNIPROTKB|C7IVS4 - symbol:Y47D3A.29 "DNA polymerase" spec... 891 2.5e-131 3
UNIPROTKB|Q7SBT9 - symbol:NCU07870 "DNA polymerase" speci... 801 1.1e-113 3
POMBASE|SPAC3H5.06c - symbol:pol1 "DNA polymerase alpha c... 769 5.5e-112 3
UNIPROTKB|I3LIH4 - symbol:POLA1 "DNA polymerase" species:... 1104 7.6e-112 1
ASPGD|ASPL0000000737 - symbol:AN10755 species:162425 "Eme... 745 7.2e-111 3
UNIPROTKB|Q5B0J8 - symbol:AN5932.2 "DNA polymerase" speci... 745 8.0e-110 3
UNIPROTKB|O48653 - symbol:LOC_Os01g64820 "DNA polymerase ... 766 2.3e-107 4
UNIPROTKB|Q0JHE4 - symbol:Os01g0868300 "DNA polymerase" s... 766 1.6e-104 3
SGD|S000005046 - symbol:POL1 "Catalytic subunit of the DN... 711 6.8e-94 3
UNIPROTKB|Q755Y6 - symbol:AER381C "DNA polymerase" specie... 717 4.4e-91 2
CGD|CAL0002431 - symbol:POL1 species:5476 "Candida albica... 735 1.2e-90 2
DICTYBASE|DDB_G0282191 - symbol:polA1 "DNA polymerase alp... 709 1.7e-87 3
UNIPROTKB|K7GS14 - symbol:LOC100627036 "Uncharacterized p... 536 9.8e-66 2
UNIPROTKB|Q23AJ0 - symbol:TTHERM_00424700 "DNA polymerase... 448 2.7e-62 2
UNIPROTKB|A8J9T2 - symbol:POLA1 "DNA polymerase" species:... 293 8.5e-54 3
UNIPROTKB|I3LGG7 - symbol:LOC100627036 "Uncharacterized p... 536 1.2e-51 1
UNIPROTKB|Q7RBM5 - symbol:PY06115 "DNA polymerase" specie... 300 3.3e-41 2
UNIPROTKB|Q8TSB3 - symbol:MA_0885 "DNA polymerase" specie... 272 4.4e-25 2
UNIPROTKB|Q22HL1 - symbol:TTHERM_00636920 "DNA polymerase... 312 1.4e-24 3
UNIPROTKB|Q9LRE6 - symbol:POLD1 "DNA polymerase delta cat... 313 4.0e-24 3
ZFIN|ZDB-GENE-040718-187 - symbol:tmem147 "transmembrane ... 275 6.1e-23 1
UNIPROTKB|Q3SZR6 - symbol:TMEM147 "Transmembrane protein ... 272 1.3e-22 1
UNIPROTKB|Q9BVK8 - symbol:TMEM147 "Transmembrane protein ... 272 1.3e-22 1
MGI|MGI:1915011 - symbol:Tmem147 "transmembrane protein 1... 272 1.3e-22 1
RGD|1304706 - symbol:Tmem147 "transmembrane protein 147" ... 272 1.3e-22 1
DICTYBASE|DDB_G0285381 - symbol:polD1 "DNA polymerase del... 296 1.4e-22 2
FB|FBgn0015338 - symbol:CG5861 species:7227 "Drosophila m... 266 5.6e-22 1
ASPGD|ASPL0000065466 - symbol:AN7325 species:162425 "Emer... 290 2.3e-21 2
UNIPROTKB|Q5AWK5 - symbol:AN7325.2 "DNA polymerase" speci... 290 2.3e-21 2
POMBASE|SPBC336.04 - symbol:cdc6 "DNA polymerase delta ca... 265 3.8e-20 2
MGI|MGI:97741 - symbol:Pold1 "polymerase (DNA directed), ... 284 5.3e-20 2
ZFIN|ZDB-GENE-060429-1 - symbol:pold1 "polymerase (DNA di... 275 5.8e-20 2
UNIPROTKB|A8HPJ0 - symbol:POLD1 "DNA polymerase" species:... 281 1.7e-19 2
WB|WBGene00008645 - symbol:F10C2.4 species:6239 "Caenorha... 269 1.9e-19 1
UNIPROTKB|P90829 - symbol:F10C2.4 "DNA polymerase delta c... 269 1.9e-19 1
FB|FBgn0263600 - symbol:DNApol-delta "DNA-polymerase-delt... 279 2.2e-19 2
UNIPROTKB|K7GQ23 - symbol:LOC100627036 "Uncharacterized p... 189 4.1e-19 2
RGD|621839 - symbol:Pold1 "polymerase (DNA directed), del... 275 5.0e-19 2
UNIPROTKB|O54747 - symbol:Pold1 "DNA polymerase delta cat... 275 5.0e-19 2
UNIPROTKB|P28340 - symbol:POLD1 "DNA polymerase delta cat... 266 1.4e-18 2
GENEDB_PFALCIPARUM|PF10_0165 - symbol:PF10_0165 "DNA poly... 252 1.6e-18 2
UNIPROTKB|Q7KQL4 - symbol:PF10_0165 "DNA polymerase" spec... 252 1.6e-18 2
UNIPROTKB|E2R5W5 - symbol:POLD1 "DNA polymerase" species:... 266 1.8e-18 2
UNIPROTKB|J9NS34 - symbol:POLD1 "DNA polymerase" species:... 266 2.0e-18 2
UNIPROTKB|E1BNZ6 - symbol:E1BNZ6 "DNA polymerase" species... 267 5.4e-18 2
UNIPROTKB|P28339 - symbol:POLD1 "DNA polymerase delta cat... 267 7.7e-18 2
UNIPROTKB|F1RH32 - symbol:POLD1 "DNA polymerase" species:... 259 7.2e-17 2
UNIPROTKB|Q755K6 - symbol:AGOS_AFL189W "DNA polymerase" s... 239 9.6e-17 3
UNIPROTKB|Q8X0N7 - symbol:B10H4.020 "DNA polymerase" spec... 237 2.0e-15 2
WB|WBGene00022734 - symbol:ZK418.5 species:6239 "Caenorha... 204 2.5e-15 1
SGD|S000002260 - symbol:POL3 "Catalytic subunit of DNA po... 225 1.9e-14 2
TIGR_CMR|SO_1820 - symbol:SO_1820 "DNA polymerase II" spe... 217 5.3e-14 1
UNIPROTKB|A6V6S5 - symbol:polB "DNA polymerase" species:3... 214 1.1e-13 1
UNIPROTKB|P26811 - symbol:dpo1 "DNA polymerase 1" species... 210 3.5e-13 1
UNIPROTKB|Q7RSZ8 - symbol:PY00203 "DNA polymerase" specie... 214 3.6e-13 2
POMBASE|SPAC688.10 - symbol:rev3 "DNA polymerase zeta cat... 159 5.5e-13 3
UNIPROTKB|P21189 - symbol:polB "DNA polymerase II" specie... 213 7.5e-13 2
WB|WBGene00021344 - symbol:Y37B11A.2 species:6239 "Caenor... 158 1.1e-12 3
UNIPROTKB|Q9BKQ3 - symbol:Y37B11A.2 "DNA polymerase" spec... 158 1.1e-12 3
FB|FBgn0002891 - symbol:mus205 "mutagen-sensitive 205" sp... 167 2.1e-12 3
UNIPROTKB|Q9KSP4 - symbol:VC_1212 "DNA polymerase" specie... 202 9.3e-12 2
TIGR_CMR|VC_1212 - symbol:VC_1212 "DNA polymerase II" spe... 202 9.3e-12 2
UNIPROTKB|I3L6U8 - symbol:LOC100737059 "DNA polymerase" s... 122 1.7e-10 2
UNIPROTKB|Q8X1U8 - symbol:UPR1 "DNA polymerase" species:5... 143 2.0e-10 3
ZFIN|ZDB-GENE-050302-55 - symbol:rev3l "REV3-like, cataly... 129 2.9e-10 2
UNIPROTKB|G4NL37 - symbol:MGG_02986 "DNA polymerase" spec... 141 4.1e-10 3
UNIPROTKB|E1BPY8 - symbol:REV3L "DNA polymerase" species:... 127 1.0e-09 3
UNIPROTKB|O60673 - symbol:REV3L "DNA polymerase zeta cata... 124 1.7e-09 3
MGI|MGI:1337131 - symbol:Rev3l "REV3-like, catalytic subu... 122 1.7e-09 3
UNIPROTKB|F1P7E8 - symbol:REV3L "DNA polymerase" species:... 126 2.0e-09 3
UNIPROTKB|F1P7D5 - symbol:REV3L "DNA polymerase" species:... 126 2.1e-09 3
UNIPROTKB|F1LMP6 - symbol:Rev3l "DNA polymerase" species:... 119 3.6e-09 4
UNIPROTKB|F1M8G6 - symbol:Rev3l "DNA polymerase" species:... 119 3.7e-09 4
ASPGD|ASPL0000070569 - symbol:uvsI species:162425 "Emeric... 131 4.0e-09 4
TAIR|locus:2015393 - symbol:AT1G47640 "AT1G47640" species... 157 4.1e-09 1
UNIPROTKB|Q75F27 - symbol:AGOS_AAL099C "DNA polymerase" s... 121 8.5e-09 3
DICTYBASE|DDB_G0293704 - symbol:DDB_G0293704 "seven trans... 142 4.7e-07 1
UNIPROTKB|A8IZI8 - symbol:POLZ1 "DNA polymerase" species:... 159 1.3e-06 2
DICTYBASE|DDB_G0271608 - symbol:rev3 "DNA polymerase zeta... 119 3.6e-06 3
UNIPROTKB|Q7RF47 - symbol:PY04863 "Uncharacterized protei... 140 8.6e-06 1
UNIPROTKB|I3LER4 - symbol:I3LER4 "Uncharacterized protein... 113 1.4e-05 1
UNIPROTKB|A8IXV5 - symbol:CHLREDRAFT_172920 "Predicted pr... 129 4.8e-05 1
GENEDB_PFALCIPARUM|PF10_0362 - symbol:PF10_0362 "DNA poly... 102 0.00055 3
WARNING: Descriptions of 1 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|Q9DE46 [details] [associations]
symbol:pola1 "DNA polymerase alpha catalytic subunit"
species:8355 "Xenopus laevis" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363
GO:GO:0000084 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
CTD:5422 HOVERGEN:HBG080008 EMBL:AF202992 RefSeq:NP_001082055.1
UniGene:Xl.7596 ProteinModelPortal:Q9DE46 SMR:Q9DE46
MINT:MINT-7386218 GeneID:398200 KEGG:xla:398200
Xenbase:XB-GENE-1000552 Uniprot:Q9DE46
Length = 1458
Score = 1106 (394.4 bits), Expect = 8.9e-182, Sum P(3) = 8.9e-182
Identities = 223/410 (54%), Positives = 286/410 (69%)
Query: 400 IGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHA 459
+ ++ ++ T + + +I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNE+LLLHA
Sbjct: 736 VHLLYMLENTWIDAKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHA 795
Query: 460 FHEKSYVLPDK------QYXXXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFI 513
F E ++++PDK Q RKKAAY+GGLVLEPK GFYDKFI
Sbjct: 796 FTENNFIVPDKPVFKKMQQTTVEDNDDMGTDQNKNKSRKKAAYAGGLVLEPKVGFYDKFI 855
Query: 514 ILMDFNSLYPSIIQEYNICFTTI--PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLV 571
+L+DFNSLYPSIIQEYNICFTT+ Q + LP ++ GILP EI+KLV
Sbjct: 856 LLLDFNSLYPSIIQEYNICFTTVHREAPSTQKGEDQDEIPELPHSDLEMGILPREIRKLV 915
Query: 572 ESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
E RR VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT +
Sbjct: 916 ERRRHVKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHQ 975
Query: 632 GREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELD 691
GREILL+TK +V+ +N EVIYGDTDS+MI+ N N+ + VFK+GN++KSE NK YK LE+D
Sbjct: 976 GREILLHTKEMVQKMNLEVIYGDTDSIMINTNCNNLEEVFKLGNRVKSEINKSYKLLEID 1035
Query: 692 IDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQI 751
IDG+ +GK + QE+KG+D+VRRDW +LA +AG +VISQI
Sbjct: 1036 IDGIFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCELAKQAGNYVISQI 1095
Query: 752 LDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
L +Q D ++NI + + +I ++ NG VP+T EI K LTK P+
Sbjct: 1096 LSDQPR-----DSIVENIQKKLTEIGENVTNGTVPITQYEINKALTKDPQ 1140
Score = 541 (195.5 bits), Expect = 8.9e-182, Sum P(3) = 8.9e-182
Identities = 106/202 (52%), Positives = 139/202 (68%)
Query: 197 DDS-LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNID 255
D S LPL T + +VFR ++LDA+ED Y QPG VYLFGKV+++ +++ SCCV V+NI+
Sbjct: 325 DSSHLPLVTGADGSQVFRFYWLDAYEDQYSQPGVVYLFGKVWIESADAYVSCCVSVKNIE 384
Query: 256 RKIYLLPRSEHLK------TKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLP 308
R +YLLPR ++ T PVS+ VY EF++ +A +YKI+ FKS+K++K YAF +P
Sbjct: 385 RTVYLLPRENRVQLSTGKDTGAPVSMMHVYQEFNEAVAEKYKIMKFKSKKVDKDYAFEIP 444
Query: 309 GVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
VP SEYLEVRYSA P LP DL G+TFSHVFGT TS LE LL RKIKGPSWLE
Sbjct: 445 DVPASSEYLEVRYSADSPQLPQDLKGETFSHVFGTNTSSLELFLLSRKIKGPSWLEIKSP 504
Query: 369 EKFPSRISWCKYEVQCNQMEKI 390
+ +SWCK E + +++
Sbjct: 505 QLSSQPMSWCKVEAVVTRPDQV 526
Score = 155 (59.6 bits), Expect = 8.9e-182, Sum P(3) = 8.9e-182
Identities = 34/76 (44%), Positives = 45/76 (59%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXX 157
+K+ + A ++LK K G K KYE ++YEEV E EY++ V RQ+
Sbjct: 18 EKSGRKEALERLKRAKA-GEKVKYEVEQVSSIYEEVDEAEYSKLVRDRQDDDWIVDDDGT 76
Query: 158 XYVEDGREIFDDDIED 173
YVEDGREIFDDD+ED
Sbjct: 77 GYVEDGREIFDDDLED 92
Score = 37 (18.1 bits), Expect = 5.9e-62, Sum P(4) = 5.9e-62
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 718 GKMICSQEIKGVDVVR 733
G++IC EI +++R
Sbjct: 687 GRIICDIEISAKELIR 702
Score = 37 (18.1 bits), Expect = 5.9e-62, Sum P(4) = 5.9e-62
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 745 KFVISQILDEQSYTDYSLDDRLQNIH 770
K + Q+L Y++ +L Q ++
Sbjct: 1430 KSTVDQVLSRSGYSEVNLSKLFQTLN 1455
>UNIPROTKB|A6NMQ1 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 HOGENOM:HOG000163524 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 HGNC:HGNC:9173
HOVERGEN:HBG080008 ChiTaRS:POLA1 OrthoDB:EOG43XV2M EMBL:AC002504
EMBL:AC004655 EMBL:AC079375 EMBL:AC135280 IPI:IPI00647655
ProteinModelPortal:A6NMQ1 SMR:A6NMQ1 STRING:A6NMQ1 PRIDE:A6NMQ1
Ensembl:ENST00000379068 ArrayExpress:A6NMQ1 Bgee:A6NMQ1
Uniprot:A6NMQ1
Length = 1468
Score = 1087 (387.7 bits), Expect = 3.8e-179, Sum P(3) = 3.8e-179
Identities = 221/413 (53%), Positives = 289/413 (69%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 744 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 803
Query: 462 EKSYVLPDKQYXXX-------XXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ RKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 804 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 863
Query: 515 LMDFNSLYPSIIQEYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 864 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 922
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 923 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 982
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 983 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1042
Query: 689 ELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV +G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1043 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1102
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1103 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1150
Score = 537 (194.1 bits), Expect = 3.8e-179, Sum P(3) = 3.8e-179
Identities = 101/200 (50%), Positives = 135/200 (67%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 324 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 383
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 384 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 443
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 444 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 503
Query: 362 WLEFPEAEKFPSRISWCKYE 381
WLE + +SWCK E
Sbjct: 504 WLEVKSPQLLNQPVSWCKVE 523
Score = 153 (58.9 bits), Expect = 3.8e-179, Sum P(3) = 3.8e-179
Identities = 34/75 (45%), Positives = 44/75 (58%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K + A ++LK K G K+KYE VYEEV E++Y++ V RQ+
Sbjct: 34 KKGRQEALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIG 92
Query: 159 YVEDGREIFDDDIED 173
YVEDGREIFDDD+ED
Sbjct: 93 YVEDGREIFDDDLED 107
Score = 50 (22.7 bits), Expect = 2.8e-62, Sum P(4) = 2.8e-62
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 718 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
G+MIC EI +++R + + S+L + K I E YS +L + EH
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSESSQLLYLLEHTW 752
Query: 775 KIRTDLDNGFVPLTLLEITKQLT 797
K + L +L + Q+T
Sbjct: 753 KDAKFILQIMCELNVLPLALQIT 775
Score = 47 (21.6 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 202 LATDHENKKVFRMFFLD-AFEDIYKQPGTVYLF 233
L TDHE K+ + FF +D K T F
Sbjct: 1414 LTTDHEKDKLKKQFFTPKVLQDYRKLKNTAEQF 1446
Score = 38 (18.4 bits), Expect = 2.8e-62, Sum P(4) = 2.8e-62
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 442 RTLMGGRSERNEFLLLHAFHEKSYVLPDK 470
+T+ ++ +NE + + A S+ L DK
Sbjct: 551 KTMQNAKNHQNEIIAMAALVHHSFAL-DK 578
>UNIPROTKB|P09884 [details] [associations]
symbol:POLA1 "DNA polymerase alpha catalytic subunit"
species:9606 "Homo sapiens" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0016363 "nuclear matrix" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IDA;TAS] [GO:0000166 "nucleotide binding"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0006272
"leading strand elongation" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;NAS] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=IMP;TAS] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0006270 "DNA
replication initiation" evidence=IDA;TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000083
"regulation of transcription involved in G1/S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 Reactome:REACT_21300 GO:GO:0005730 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
DrugBank:DB01073 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000216
GO:GO:0000084 GO:GO:0008408 GO:GO:0017076 GO:GO:0006303
GO:GO:0000722 GO:GO:0000083 Reactome:REACT_383 GO:GO:0003887
KO:K02320 DrugBank:DB00631 GO:GO:0032201 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:X06745 EMBL:AY275833 EMBL:M64481
IPI:IPI00220317 PIR:S00257 RefSeq:NP_058633.2 UniGene:Hs.567319
PDB:1K0P PDB:1K18 PDB:1N5G PDBsum:1K0P PDBsum:1K18 PDBsum:1N5G
ProteinModelPortal:P09884 SMR:P09884 IntAct:P09884
MINT:MINT-1517478 STRING:P09884 PhosphoSite:P09884 DMDM:60392197
PaxDb:P09884 PRIDE:P09884 Ensembl:ENST00000379059 GeneID:5422
KEGG:hsa:5422 UCSC:uc004dbl.3 CTD:5422 GeneCards:GC0XP024712
H-InvDB:HIX0028476 HGNC:HGNC:9173 HPA:CAB012274 HPA:HPA002947
MIM:312040 neXtProt:NX_P09884 PharmGKB:PA162399856
HOVERGEN:HBG080008 PhylomeDB:P09884 BindingDB:P09884
ChEMBL:CHEMBL1828 ChiTaRS:POLA1 EvolutionaryTrace:P09884
GenomeRNAi:5422 NextBio:20977 ArrayExpress:P09884 Bgee:P09884
CleanEx:HS_POLA1 Genevestigator:P09884 GO:GO:0019103 Uniprot:P09884
Length = 1462
Score = 1087 (387.7 bits), Expect = 3.8e-179, Sum P(3) = 3.8e-179
Identities = 221/413 (53%), Positives = 289/413 (69%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 738 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 797
Query: 462 EKSYVLPDKQYXXX-------XXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ RKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 798 ENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFIL 857
Query: 515 LMDFNSLYPSIIQEYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 858 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVTEDGEQEQIPE-LPDPSLEMGILPREIR 916
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 917 KLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 976
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK L
Sbjct: 977 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLL 1036
Query: 689 ELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV +G + QE+KG+D+VRRDW LA + G FVI
Sbjct: 1037 EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGLDIVRRDWCDLAKDTGNFVI 1096
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1144
Score = 537 (194.1 bits), Expect = 3.8e-179, Sum P(3) = 3.8e-179
Identities = 101/200 (50%), Positives = 135/200 (67%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
++Q LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCC
Sbjct: 318 SVQEVQVDSSHLPLVKGADEEQVFHFYWLDAYEDQYNQPGVVFLFGKVWIESAETHVSCC 377
Query: 249 VIVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEK 301
V+V+NI+R +Y LPR + +T P+S+ VY EFD+ IAT+YKI+ FKS+ +EK
Sbjct: 378 VMVKNIERTLYFLPREMKIDLNTGKETGTPISMKDVYEEFDEKIATKYKIMKFKSKPVEK 437
Query: 302 KYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPS 361
YAF +P VP+ SEYLEV+YSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP
Sbjct: 438 NYAFEIPDVPEKSEYLEVKYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPC 497
Query: 362 WLEFPEAEKFPSRISWCKYE 381
WLE + +SWCK E
Sbjct: 498 WLEVKSPQLLNQPVSWCKVE 517
Score = 153 (58.9 bits), Expect = 3.8e-179, Sum P(3) = 3.8e-179
Identities = 34/75 (45%), Positives = 44/75 (58%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K + A ++LK K G K+KYE VYEEV E++Y++ V RQ+
Sbjct: 28 KKGRQEALERLKKAKA-GEKYKYEVEDFTGVYEEVDEEQYSKLVQARQDDDWIVDDDGIG 86
Query: 159 YVEDGREIFDDDIED 173
YVEDGREIFDDD+ED
Sbjct: 87 YVEDGREIFDDDLED 101
Score = 50 (22.7 bits), Expect = 2.7e-62, Sum P(4) = 2.7e-62
Identities = 22/83 (26%), Positives = 36/83 (43%)
Query: 718 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
G+MIC EI +++R + + S+L + K I E YS +L + EH
Sbjct: 687 GRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSESSQLLYLLEHTW 746
Query: 775 KIRTDLDNGFVPLTLLEITKQLT 797
K + L +L + Q+T
Sbjct: 747 KDAKFILQIMCELNVLPLALQIT 769
Score = 47 (21.6 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 202 LATDHENKKVFRMFFLD-AFEDIYKQPGTVYLF 233
L TDHE K+ + FF +D K T F
Sbjct: 1408 LTTDHEKDKLKKQFFTPKVLQDYRKLKNTAEQF 1440
Score = 38 (18.4 bits), Expect = 2.7e-62, Sum P(4) = 2.7e-62
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 442 RTLMGGRSERNEFLLLHAFHEKSYVLPDK 470
+T+ ++ +NE + + A S+ L DK
Sbjct: 545 KTMQNAKNHQNEIIAMAALVHHSFAL-DK 572
>ZFIN|ZDB-GENE-030114-9 [details] [associations]
symbol:pola1 "polymerase (DNA directed), alpha 1"
species:7955 "Danio rerio" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IBA] [GO:0006260 "DNA replication"
evidence=IEA;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IBA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
ZFIN:ZDB-GENE-030114-9 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:BX470095 IPI:IPI00898449
Ensembl:ENSDART00000128595 ArrayExpress:E7FB68 Bgee:E7FB68
Uniprot:E7FB68
Length = 1468
Score = 1115 (397.6 bits), Expect = 8.0e-179, Sum P(3) = 8.0e-179
Identities = 224/411 (54%), Positives = 288/411 (70%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + + I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNE+LLLHAFH
Sbjct: 747 LLYLLELTWMDAKLILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFH 806
Query: 462 EKSYVLPDKQYXXXXXXXXX------XXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIIL 515
E+ +++PDKQ+ RKKAAY+GGLVL+PK GFYDKFI+L
Sbjct: 807 ERDFIVPDKQFFKKAQQDLGEDEEGDSGKGKSNKTRKKAAYAGGLVLDPKVGFYDKFILL 866
Query: 516 MDFNSLYPSIIQEYNICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKL 570
+DFNSLYPSIIQE+NICFTT+ R + D + E LP+ ++ GILP EI+KL
Sbjct: 867 LDFNSLYPSIIQEFNICFTTVERGATNTRKKTEEDEDEIPE-LPDQSLEMGILPKEIRKL 925
Query: 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
VE RRQVK LMK+P+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT
Sbjct: 926 VERRRQVKQLMKEPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVTH 985
Query: 631 KGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK LE+
Sbjct: 986 KGREILMHTKEMVQRMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEI 1045
Query: 691 DIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
DIDGV +GK QE+KG+D+VRRDW LA E G +VI Q
Sbjct: 1046 DIDGVFKSLLLLKKKKYAALMVEPQGDGKYTTKQELKGLDIVRRDWCDLAKECGNYVIGQ 1105
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
IL +Q+ D ++NI +H+ +I + NG +PL + EI K LTK P+
Sbjct: 1106 ILSDQNR-----DTIIENIQKHLIEIGEKVANGNIPLNMFEIHKSLTKEPQ 1151
Score = 518 (187.4 bits), Expect = 8.0e-179, Sum P(3) = 8.0e-179
Identities = 104/201 (51%), Positives = 135/201 (67%)
Query: 197 DDS-LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNID 255
D S LPL + VFR ++LDAFED Y QPG V+LFGKV+++ +H SCCV V+NI+
Sbjct: 336 DSSQLPLVEGPDGDMVFRFYWLDAFEDQYNQPGVVFLFGKVWIESAEAHVSCCVAVKNIE 395
Query: 256 RKIYLLPRSEH---LKTKEP---VSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPG 309
R +YLLPR EH L T E V + VY EF++I+ ++KI+ FKS+ + K YAF +P
Sbjct: 396 RTMYLLPR-EHKVNLATGEKGVAVGMMDVYKEFNEISEKFKIMKFKSKPVTKNYAFEIPD 454
Query: 310 VPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE 369
+P SEYLEV+YSA+ P+LPSDL G TFSHVFGT TS LE+ LL RKI+GP WL+ +
Sbjct: 455 IPSQSEYLEVKYSAEIPSLPSDLKGTTFSHVFGTNTSSLEHFLLNRKIRGPCWLDVTTPQ 514
Query: 370 KFPSRISWCKYEVQCNQMEKI 390
ISWCK E + + I
Sbjct: 515 LSNQPISWCKVEAVAQKSDLI 535
Score = 141 (54.7 bits), Expect = 8.0e-179, Sum P(3) = 8.0e-179
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXX 157
+K + +A ++LK K +G K KYE ++Y+EV E++Y++ V +RQ+
Sbjct: 35 EKVGRKSALEQLKRAK-KGEKVKYEVEEFTSIYDEVDEEQYSKIVRERQDDDWIIDDDGT 93
Query: 158 XYVEDGREIFDDDIED 173
YVEDGREIFD++++D
Sbjct: 94 GYVEDGREIFDEELDD 109
Score = 37 (18.1 bits), Expect = 2.5e-56, Sum P(3) = 2.5e-56
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 718 GKMICSQEIKGVDVVR 733
G+++C EI +++R
Sbjct: 696 GRLVCDIEISAKELIR 711
>UNIPROTKB|Q59J88 [details] [associations]
symbol:Q59J88 "DNA polymerase" species:8517 "Iguana iguana"
[GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178527 Uniprot:Q59J88
Length = 1441
Score = 1117 (398.3 bits), Expect = 5.6e-178, Sum P(3) = 5.6e-178
Identities = 228/412 (55%), Positives = 291/412 (70%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + YI++IMC+LNVLPLA+QITN+ GNV+SRTLMGGR+ERNE+LLLHAF+
Sbjct: 710 LLYMVENTWTDAKYILQIMCDLNVLPLALQITNIAGNVMSRTLMGGRAERNEYLLLHAFY 769
Query: 462 EKSYVLPDKQYXXXXXXXXXXXXXX------XXXXRKKAAYSGGLVLEPKKGFYDKFIIL 515
EK++++PDKQ RKKAAYSGGLVLEPK GFYDKFI+L
Sbjct: 770 EKNFIVPDKQLFKKTQKQLEEDEDFEGDQNKSKTGRKKAAYSGGLVLEPKVGFYDKFILL 829
Query: 516 MDFNSLYPSIIQEYNICFTTIPV------RMLQDSDITTLCEYLPEHQVDTGILPSEIKK 569
+DFNSLYPSIIQE+NICFTT+ + +D + + E LP+ +D GILP EI+K
Sbjct: 830 LDFNSLYPSIIQEFNICFTTVHRVSSSLHKNTEDGEEEEIPE-LPDSSLDMGILPKEIRK 888
Query: 570 LVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVT 629
LVE RRQVK LMKQP+L+SDL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT
Sbjct: 889 LVERRRQVKQLMKQPDLNSDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVT 948
Query: 630 AKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
KGREIL++TK +VE +N EVIYGDTDS+MI+ N+ + + VFK+GN+IKSE NKLYK LE
Sbjct: 949 FKGREILMHTKEMVEKMNLEVIYGDTDSIMINTNITNLEEVFKLGNKIKSEVNKLYKLLE 1008
Query: 690 LDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+DIDG+ +GK I QE+KG+D+VRRDW LA E G ++IS
Sbjct: 1009 IDIDGIFKSLLLLKKKKYAALVVEPTGDGKYITKQELKGLDIVRRDWCDLAKETGNYIIS 1068
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +Q + D ++ NI + +I ++ NG VP+ EI K LTK P+
Sbjct: 1069 QILSDQ-FRDVIVE----NIQRRLIQIGENVVNGSVPIKQFEINKALTKDPQ 1115
Score = 532 (192.3 bits), Expect = 5.6e-178, Sum P(3) = 5.6e-178
Identities = 102/194 (52%), Positives = 136/194 (70%)
Query: 197 DDS-LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNID 255
D S LPL T + +++FR ++LDA+ED Y QPG V+LFGKV+++ S+ SCCV V+NI+
Sbjct: 297 DSSQLPLITGADGQQIFRFYWLDAYEDQYNQPGVVFLFGKVWIESAKSYVSCCVTVKNIE 356
Query: 256 RKIYLLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLP 308
R IYLLPR + +T+ PV++ VY EF D +A ++KI+ +KS+K+EK YAF +P
Sbjct: 357 RTIYLLPRESRIDKCSGKETENPVTMMDVYQEFNDHVAEKFKIMKYKSKKVEKNYAFEIP 416
Query: 309 GVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
VP S+YLEVRYSA+ LP DL G+TFSHVFGT TS LE LL+ RKIKGP WLE
Sbjct: 417 DVPAKSDYLEVRYSAEYSRLPQDLKGETFSHVFGTNTSSLELLLMNRKIKGPGWLEIKNP 476
Query: 369 EKFPSRISWCKYEV 382
+ +SWCK E+
Sbjct: 477 QLSSQAVSWCKVEL 490
Score = 117 (46.2 bits), Expect = 5.6e-178, Sum P(3) = 5.6e-178
Identities = 22/46 (47%), Positives = 32/46 (69%)
Query: 128 NVYEEVSEKEYTERVLKRQEXXXXXXXXXXXYVEDGREIFDDDIED 173
+VY+E+ E++Y++ V +RQE YVEDGREIFD+D+ED
Sbjct: 3 SVYDEIDEEQYSKIVRERQEDDWIVDDDGVGYVEDGREIFDEDLED 48
Score = 44 (20.5 bits), Expect = 1.0e-56, Sum P(3) = 1.0e-56
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 777
G+MIC EI +++R L +++QIL + T + ++N++ +++
Sbjct: 659 GRMICDVEISAKELIRCKSYHLTE-----LVNQILKVERIT--VPPEEIRNMYSDPRQLL 711
Query: 778 TDLDNGFVPLT-LLEITKQLTKAP 800
++N + +L+I L P
Sbjct: 712 YMVENTWTDAKYILQIMCDLNVLP 735
>UNIPROTKB|F6Y1C9 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSCAFT00000021463 EMBL:AAEX03026211 Uniprot:F6Y1C9
Length = 1467
Score = 1083 (386.3 bits), Expect = 3.0e-177, Sum P(3) = 3.0e-177
Identities = 222/413 (53%), Positives = 288/413 (69%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 744 LLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 803
Query: 462 EKSYVLPDKQYXXX-------XXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ RKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 804 ENNYIVPDKQIFRKPQQKLGDEDEELDGDANKYKKGRKKAAYAGGLVLDPKAGFYDKFIL 863
Query: 515 LMDFNSLYPSIIQEYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 864 LLDFNSLYPSIIQEFNICFTTVQRVASETQKVTEDGEQEQIPE-LPDPGLEMGILPREIR 922
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 923 KLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 982
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N D + V+K+GN++KSE NKLYK L
Sbjct: 983 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTDLEEVYKLGNKVKSEVNKLYKLL 1042
Query: 689 ELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDGV +G QE+KG+D+VRRDW LA E G FVI
Sbjct: 1043 EIDIDGVFKSLLLLKKKKYGALVVEPTSDGNYSTKQELKGLDIVRRDWCDLAKETGNFVI 1102
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1103 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1150
Score = 523 (189.2 bits), Expect = 3.0e-177, Sum P(3) = 3.0e-177
Identities = 101/193 (52%), Positives = 133/193 (68%)
Query: 197 DDS-LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNID 255
D S LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+
Sbjct: 331 DSSHLPLVKGTDEEQVFHFYWLDAYEDQYSQPGVVFLFGKVWIESAKTHVSCCVMVKNIE 390
Query: 256 RKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLP 308
R +Y LPR + +T+ V++ VY EFD+ IA +YKI+ FKS+ +EK YAF +P
Sbjct: 391 RTLYFLPREMKIDLNTGKETETLVTMKDVYDEFDEKIAAKYKIMKFKSKPVEKNYAFEIP 450
Query: 309 GVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE
Sbjct: 451 DVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLEMFLMNRKIKGPCWLEVKNP 510
Query: 369 EKFPSRISWCKYE 381
+ +SWCK E
Sbjct: 511 QLLNQPVSWCKVE 523
Score = 153 (58.9 bits), Expect = 3.0e-177, Sum P(3) = 3.0e-177
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+
Sbjct: 34 KRGRQEALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIG 92
Query: 159 YVEDGREIFDDDIED 173
YVEDGREIFDDD+ED
Sbjct: 93 YVEDGREIFDDDLED 107
Score = 45 (20.9 bits), Expect = 4.0e-59, Sum P(3) = 4.0e-59
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 718 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
G+MIC EI +++R + + S+L + + I E YS L + EH
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILRTERVVIPMENVRNMYSESSHLLYLLEHTW 752
Query: 775 KIRTDLDNGFVPLTLLEITKQLT 797
K + L +L + Q+T
Sbjct: 753 KDARFILQIMCELNVLPLALQIT 775
Score = 44 (20.5 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 202 LATDHENKKVFRMFFLDAFEDIYKQPGTVYLF 233
L+TD E K+ ++F L +D K T F
Sbjct: 1414 LSTDQEKDKLKKVFTLKVRQDYQKLRNTAEQF 1445
>MGI|MGI:99660 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1"
species:10090 "Mus musculus" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISO] [GO:0000166 "nucleotide binding" evidence=ISO]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005635 "nuclear envelope" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0006260 "DNA
replication" evidence=ISO;IMP;IDA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISO] [GO:0006270 "DNA replication
initiation" evidence=ISO] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISO] [GO:0006272 "leading
strand elongation" evidence=ISO] [GO:0006273 "lagging strand
elongation" evidence=ISO] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISO;IBA] [GO:0008283 "cell
proliferation" evidence=ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017076 "purine
nucleotide binding" evidence=ISO] [GO:0019103 "pyrimidine
nucleotide binding" evidence=ISO] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
MGI:MGI:99660 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008283 GO:GO:0000785 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0003690 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0008408 GO:GO:0017076
GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 CTD:5422
HOVERGEN:HBG080008 GO:GO:0019103 EMBL:D13543 EMBL:D17384
IPI:IPI00114051 PIR:S45628 RefSeq:NP_032918.1 UniGene:Mm.1923
ProteinModelPortal:P33609 SMR:P33609 IntAct:P33609 STRING:P33609
PhosphoSite:P33609 PaxDb:P33609 PRIDE:P33609
Ensembl:ENSMUST00000006856 GeneID:18968 KEGG:mmu:18968
InParanoid:P33609 OrthoDB:EOG43XV2M BindingDB:P33609
ChEMBL:CHEMBL2797 NextBio:295308 Bgee:P33609 CleanEx:MM_POLA1
Genevestigator:P33609 GermOnline:ENSMUSG00000006678 Uniprot:P33609
Length = 1465
Score = 1074 (383.1 bits), Expect = 5.0e-177, Sum P(3) = 5.0e-177
Identities = 223/417 (53%), Positives = 288/417 (69%)
Query: 398 YLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLL 457
YL+ ++E I + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLL
Sbjct: 741 YLLYLLEHI---WKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLL 797
Query: 458 HAFHEKSYVLPDKQYXXX-------XXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYD 510
HAF+E +Y++PDKQ RKKA Y+GGLVL+PK GFYD
Sbjct: 798 HAFYENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKATYAGGLVLDPKVGFYD 857
Query: 511 KFIILMDFNSLYPSIIQEYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILP 564
KFI+L+DFNSLYPSIIQE+NICFTT+ + +D + + E LP+ ++ GILP
Sbjct: 858 KFILLLDFNSLYPSIIQEFNICFTTVQRVTSEVQKATEDEEQEQIPE-LPDPNLEMGILP 916
Query: 565 SEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPL 624
EI+KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PL
Sbjct: 917 REIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPL 976
Query: 625 AALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKL 684
AALVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKL
Sbjct: 977 AALVTYKGREILMHTKDMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKL 1036
Query: 685 YKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAG 744
YK LE+DID V +G I QE+KG+D+VRRDW LA + G
Sbjct: 1037 YKLLEIDIDAVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTG 1096
Query: 745 KFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
FVI QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1097 NFVIGQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1148
Score = 530 (191.6 bits), Expect = 5.0e-177, Sum P(3) = 5.0e-177
Identities = 104/199 (52%), Positives = 138/199 (69%)
Query: 191 QNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVI 250
Q +LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+
Sbjct: 324 QEVQVDSSNLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWIESVKTHVSCCVM 383
Query: 251 VQNIDRKIYLLPRSEH--LKT-KE---PVSIAQVYSEFD-QIATQYKILDFKSRKIEKKY 303
V+NI+R +Y LPR L T KE PV++ VY EFD +I+ +YKI+ FKS+ +EK Y
Sbjct: 384 VKNIERTLYFLPREMKFDLNTGKETAIPVTMKDVYEEFDSKISAKYKIMKFKSKIVEKNY 443
Query: 304 AFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWL 363
AF +P VP+ SEYLEVRYSA+ P LP +L G+TFSHVFGT TS LE L+ RKIKGP WL
Sbjct: 444 AFEIPDVPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCWL 503
Query: 364 EFPEAEKFPSRISWCKYEV 382
E + ISWCK+EV
Sbjct: 504 EVKNPQLLNQPISWCKFEV 522
Score = 153 (58.9 bits), Expect = 5.0e-177, Sum P(3) = 5.0e-177
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+
Sbjct: 34 KKGRQEALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIG 92
Query: 159 YVEDGREIFDDDIED 173
YVEDGREIFDDD+ED
Sbjct: 93 YVEDGREIFDDDLED 107
Score = 45 (20.9 bits), Expect = 3.3e-60, Sum P(3) = 3.3e-60
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 718 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
G+MIC EI +++ + + S+L + K I E YS L + EH+
Sbjct: 691 GRMICDVEISAKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSESSYLLYLLEHIW 750
Query: 775 KIRTDLDNGFVPLTLLEITKQLT 797
K + L +L + Q+T
Sbjct: 751 KDARFILQIMCELNVLPLALQIT 773
Score = 43 (20.2 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 197 DDSLPLATDHENKKVFRMFF-LDAFEDIYK 225
D +L T+HE K+ + FF L +D K
Sbjct: 1406 DCALEKLTEHEKDKLKKQFFPLRVLQDYRK 1435
>UNIPROTKB|Q59J89 [details] [associations]
symbol:Q59J89 "DNA polymerase" species:34903 "Trachemys
scripta" [GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178526 Uniprot:Q59J89
Length = 1441
Score = 1089 (388.4 bits), Expect = 2.7e-176, Sum P(3) = 2.7e-176
Identities = 222/411 (54%), Positives = 284/411 (69%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GNV+SRT+MGGRSERNEFLLLHAF+
Sbjct: 708 LLYMLENTWTDARFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFY 767
Query: 462 EKSYVLPDKQYXXX------XXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIIL 515
E+ Y++PDKQ RKKAAY+GGLVL+PK GFYD FI+L
Sbjct: 768 ERDYIVPDKQVFKKPQQKLVDEDEGVEDQNKSKIGRKKAAYAGGLVLDPKVGFYDTFILL 827
Query: 516 MDFNSLYPSIIQEYNICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKL 570
+DFNSLYPSIIQE+NICFTT+ + + + LP+ ++ GILP EI+KL
Sbjct: 828 LDFNSLYPSIIQEFNICFTTVQRESSDAQKRAEDGVQEEIPELPDPSLEMGILPKEIRKL 887
Query: 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTA 630
VE RRQVK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT
Sbjct: 888 VERRRQVKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTH 947
Query: 631 KGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLEL 690
KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN+IKSE NKLYK LE+
Sbjct: 948 KGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKIKSEVNKLYKLLEI 1007
Query: 691 DIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 750
DIDGV +GK + QE+KG+D+VRRDW LA E G +VI Q
Sbjct: 1008 DIDGVFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQ 1067
Query: 751 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
IL +QS D ++NI + +I ++ NG VP++ EI K LTK P+
Sbjct: 1068 ILSDQSR-----DTIVENIQRRLIEIGENVINGRVPISQFEINKALTKDPQ 1113
Score = 543 (196.2 bits), Expect = 2.7e-176, Sum P(3) = 2.7e-176
Identities = 103/189 (54%), Positives = 134/189 (70%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + +VFR ++LDA+ED Y QPG V+LFGKV+++ ++ SCCV V+NI+R IY
Sbjct: 299 LPLVNGEDGDQVFRFYWLDAYEDQYSQPGVVFLFGKVWIESAETYVSCCVTVKNIERIIY 358
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR + +T+ PV++ +Y EF DQIA +YKI+ F+S+K+EK YAF +P VP
Sbjct: 359 LLPREMQMDLTSGKETENPVTMMNIYQEFNDQIAVKYKIMKFRSKKVEKNYAFEIPDVPA 418
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
S+YLEVRYSA+ P LP DL G+TFSHVFGT TS LE LL+ RKIKGPSWLE +
Sbjct: 419 KSDYLEVRYSAEFPRLPQDLKGETFSHVFGTNTSSLELLLMSRKIKGPSWLEIKNPQPLS 478
Query: 373 SRISWCKYE 381
+SWCK E
Sbjct: 479 HPVSWCKVE 487
Score = 118 (46.6 bits), Expect = 2.7e-176, Sum P(3) = 2.7e-176
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 128 NVYEEVSEKEYTERVLKRQEXXXXXXXXXXXYVEDGREIFDDDIED 173
+VYEEV E +Y++ V +RQ+ YVEDGREIFD+D+ED
Sbjct: 3 SVYEEVDEAQYSKMVRERQDDDWIVDDDGIGYVEDGREIFDEDLED 48
Score = 47 (21.6 bits), Expect = 3.7e-59, Sum P(3) = 3.7e-59
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 777
G+MIC EI +++R L SE ++ QIL + T + ++N++ +
Sbjct: 657 GRMICDVEISAKELIRCKSYHL-SE----LVHQILKTERIT--IPPEEIRNMYSDSSHLL 709
Query: 778 TDLDNGFVPLT-LLEITKQLTKAP 800
L+N + +L+I +L P
Sbjct: 710 YMLENTWTDARFILQIMCELNVLP 733
>UNIPROTKB|E2QVU2 [details] [associations]
symbol:POLA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 Ensembl:ENSCAFT00000021463 Uniprot:E2QVU2
Length = 1357
Score = 1074 (383.1 bits), Expect = 2.7e-176, Sum P(3) = 2.7e-176
Identities = 222/414 (53%), Positives = 288/414 (69%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 744 LLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 803
Query: 462 EKSYVLPDKQYXXX-------XXXXXXXXXXXXXXXRKKAAYSGGLVLEPKK-GFYDKFI 513
E +Y++PDKQ RKKAAY+GGLVL+PK GFYDKFI
Sbjct: 804 ENNYIVPDKQIFRKPQQKLGDEDEELDGDANKYKKGRKKAAYAGGLVLDPKAAGFYDKFI 863
Query: 514 ILMDFNSLYPSIIQEYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILPSEI 567
+L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI
Sbjct: 864 LLLDFNSLYPSIIQEFNICFTTVQRVASETQKVTEDGEQEQIPE-LPDPGLEMGILPREI 922
Query: 568 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 627
+KLVE R+QVK LMKQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAAL
Sbjct: 923 RKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAAL 982
Query: 628 VTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ 687
VT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N D + V+K+GN++KSE NKLYK
Sbjct: 983 VTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTDLEEVYKLGNKVKSEVNKLYKL 1042
Query: 688 LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFV 747
LE+DIDGV +G QE+KG+D+VRRDW LA E G FV
Sbjct: 1043 LEIDIDGVFKSLLLLKKKKYGALVVEPTSDGNYSTKQELKGLDIVRRDWCDLAKETGNFV 1102
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
I QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1103 IGQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1151
Score = 523 (189.2 bits), Expect = 2.7e-176, Sum P(3) = 2.7e-176
Identities = 101/193 (52%), Positives = 133/193 (68%)
Query: 197 DDS-LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNID 255
D S LPL + ++VF ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+
Sbjct: 331 DSSHLPLVKGTDEEQVFHFYWLDAYEDQYSQPGVVFLFGKVWIESAKTHVSCCVMVKNIE 390
Query: 256 RKIYLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLP 308
R +Y LPR + +T+ V++ VY EFD+ IA +YKI+ FKS+ +EK YAF +P
Sbjct: 391 RTLYFLPREMKIDLNTGKETETLVTMKDVYDEFDEKIAAKYKIMKFKSKPVEKNYAFEIP 450
Query: 309 GVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE
Sbjct: 451 DVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLEMFLMNRKIKGPCWLEVKNP 510
Query: 369 EKFPSRISWCKYE 381
+ +SWCK E
Sbjct: 511 QLLNQPVSWCKVE 523
Score = 153 (58.9 bits), Expect = 2.7e-176, Sum P(3) = 2.7e-176
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+
Sbjct: 34 KRGRQEALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIG 92
Query: 159 YVEDGREIFDDDIED 173
YVEDGREIFDDD+ED
Sbjct: 93 YVEDGREIFDDDLED 107
Score = 45 (20.9 bits), Expect = 2.5e-59, Sum P(3) = 2.5e-59
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 718 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
G+MIC EI +++R + + S+L + + I E YS L + EH
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILRTERVVIPMENVRNMYSESSHLLYLLEHTW 752
Query: 775 KIRTDLDNGFVPLTLLEITKQLT 797
K + L +L + Q+T
Sbjct: 753 KDARFILQIMCELNVLPLALQIT 775
>UNIPROTKB|F1NR19 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9031 "Gallus gallus"
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000785 "chromatin" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003896 "DNA primase activity"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:AADN02011218 EMBL:AADN02011219
EMBL:AADN02011220 EMBL:AADN02011221 EMBL:AADN02011222
EMBL:AADN02011223 IPI:IPI00588123 Ensembl:ENSGALT00000026316
Uniprot:F1NR19
Length = 1462
Score = 1089 (388.4 bits), Expect = 6.4e-175, Sum P(3) = 6.4e-175
Identities = 224/405 (55%), Positives = 281/405 (69%)
Query: 409 TMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLP 468
T + +I++IMCELNVLPLA+QITN+ GNV+SRT+MGGRSERNEFLLLHAF+EK Y++P
Sbjct: 736 TWTDAKFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERNEFLLLHAFYEKDYIVP 795
Query: 469 DKQYXXX------XXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLY 522
DKQ +KKAAY+GGLVL+PK GFYDKFI+L+DFNSLY
Sbjct: 796 DKQVFKKPLQKLVDEDEDFEDQNKSKIGKKKAAYAGGLVLDPKVGFYDKFILLLDFNSLY 855
Query: 523 PSIIQEYNICFTTIPVRMLQDSDITTLCEY------LPEHQVDTGILPSEIKKLVESRRQ 576
PSIIQE+NICFTT+ R+ ++ E LP+ ++ GILP EI+KLVE RRQ
Sbjct: 856 PSIIQEFNICFTTVQ-RLSSEAQKRAEVEEEEEIPELPDPSLEMGILPKEIRKLVERRRQ 914
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK LMKQP+L+ DL +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL
Sbjct: 915 VKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTHKGREIL 974
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVX 696
++TK +V+ +N EVIYGDTDS+MI+ N + D VFK+GN+IKSE NKLYK LE+DIDGV
Sbjct: 975 MHTKEMVQKMNLEVIYGDTDSIMINTNSTNLDEVFKLGNKIKSEVNKLYKLLEIDIDGVF 1034
Query: 697 XXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQS 756
+GK + QE+KG+D+VRRDW LA E G +VI QIL +Q
Sbjct: 1035 KSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQP 1094
Query: 757 YTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + +I ++ NG +P+ EI K LTK P+
Sbjct: 1095 R-----DIIVENIQRRLIEIGENVINGQIPVNQFEINKALTKDPQ 1134
Score = 522 (188.8 bits), Expect = 6.4e-175, Sum P(3) = 6.4e-175
Identities = 100/189 (52%), Positives = 131/189 (69%)
Query: 200 LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
LPL + +V R ++LDA+ED Y QPG V+LFGKV+++ N++ SCCV V+NI+R +Y
Sbjct: 319 LPLVNGENDDQVLRFYWLDAYEDQYSQPGVVFLFGKVWIESANTYVSCCVTVKNIERTVY 378
Query: 260 LLPRSEHL------KTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNLPGVPD 312
LLPR + +T+ PV+I V+ EF D I+ +YKI+ FKS+K+EK YAF +P VP
Sbjct: 379 LLPRETEMDLSSGKETETPVTIMNVFKEFNDCISPKYKIMKFKSKKVEKYYAFEIPDVPA 438
Query: 313 LSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFP 372
SEYLEV+YSA+ P LP DL G+TFSH FGT TS LE LL+ RKIKGP WLE +
Sbjct: 439 KSEYLEVKYSAEYPRLPQDLKGETFSHAFGTNTSSLELLLMSRKIKGPCWLEIKNPQPSN 498
Query: 373 SRISWCKYE 381
+SWCK E
Sbjct: 499 QSVSWCKVE 507
Score = 126 (49.4 bits), Expect = 6.4e-175, Sum P(3) = 6.4e-175
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 116 GVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXXYVEDGREIFDDDIED 173
G K KYE VY+E+ E++Y++ V +RQ+ YVEDGREIFD+D++D
Sbjct: 6 GEKLKYEVEEFTGVYDEIDEEQYSKIVRERQDDDWIVDDDGIGYVEDGREIFDEDLDD 63
Score = 54 (24.1 bits), Expect = 4.1e-57, Sum P(3) = 4.1e-57
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 777
G+MIC EI +++R L SE ++ QIL + T L + ++N++ +
Sbjct: 678 GRMICDVEISAKELIRCKSYHL-SE----LVHQILKTERVT--ILPEEIRNLYSDSPHLL 730
Query: 778 TDLDNGFVPLT-LLEITKQLTKAP 800
L+N + +L+I +L P
Sbjct: 731 FMLENTWTDAKFILQIMCELNVLP 754
>UNIPROTKB|E1BJF4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9913 "Bos taurus"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006273
"lagging strand elongation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000084 "S phase of mitotic
cell cycle" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:DAAA02074352 IPI:IPI00717665
Ensembl:ENSBTAT00000010742 Uniprot:E1BJF4
Length = 1351
Score = 1040 (371.2 bits), Expect = 1.3e-172, Sum P(3) = 1.3e-172
Identities = 217/415 (52%), Positives = 284/415 (68%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 744 LLYLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 803
Query: 462 EKSYVLPDKQYXXX-------XXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ RKKAAYSGGLVL+PK GFYDKFI+
Sbjct: 804 ENNYIVPDKQTFRKPQQKLGDEDEDIDGDTNKYKKGRKKAAYSGGLVLDPKVGFYDKFIL 863
Query: 515 LMDFNSLYPSIIQEYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++++D + + E LP+ ++ GILP EI+
Sbjct: 864 LLDFNSLYPSIIQEFNICFTTVQRVASEAQKVVEDGEQEQIPE-LPDPSLEMGILPREIR 922
Query: 569 KLVESRRQV--KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAA 626
KLVE RR+ K LM Q L S +QYDIRQKALKLTANSMYGCLGF SRF+A+PLAA
Sbjct: 923 KLVERRRETIQKHLMPQICLLSLCGLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAA 982
Query: 627 LVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYK 686
LVT KGREIL++TK +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYK
Sbjct: 983 LVTYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYK 1042
Query: 687 QLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746
LE+DIDG+ +G + QE+KG+D+VRRDW LA + G F
Sbjct: 1043 LLEIDIDGIFKSLLLLKKKKYAALIVEPTSDGNYVTKQEVKGLDIVRRDWCDLAKDTGNF 1102
Query: 747 VISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
VI QIL +Q+ D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1103 VIGQILSDQNR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1152
Score = 522 (188.8 bits), Expect = 1.3e-172, Sum P(3) = 1.3e-172
Identities = 105/193 (54%), Positives = 134/193 (69%)
Query: 197 DDS-LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNID 255
D S LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+V+NI+
Sbjct: 331 DSSHLPLVKGADEEQVFQFYWLDAYEDPYSQPGVVFLFGKVWIESAETHVSCCVMVKNIE 390
Query: 256 RKIYLLPRSEH--LKT-KE---PVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLP 308
R + LPR L T KE PV++ VY EFD+ IA +YKI+ FKS+ +EK YAF +P
Sbjct: 391 RSLCFLPREMKVDLNTGKESGTPVTMKDVYDEFDEKIAAKYKIMKFKSKVVEKNYAFEIP 450
Query: 309 GVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEA 368
VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE
Sbjct: 451 DVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNP 510
Query: 369 EKFPSRISWCKYE 381
+ ISWCK E
Sbjct: 511 QLLNQPISWCKVE 523
Score = 153 (58.9 bits), Expect = 1.3e-172, Sum P(3) = 1.3e-172
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+
Sbjct: 34 KKGRQQALERLKRAKA-GEKYKYEVEDFTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIG 92
Query: 159 YVEDGREIFDDDIED 173
YVEDGREIFDDD+ED
Sbjct: 93 YVEDGREIFDDDLED 107
Score = 46 (21.3 bits), Expect = 1.9e-59, Sum P(4) = 1.9e-59
Identities = 22/83 (26%), Positives = 35/83 (42%)
Query: 718 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
G+MIC EI +++R + + S+L + K I E YS L + EH
Sbjct: 693 GRMICDVEISAKELIRCKSYHLSELVQQILKTERIVIPIETIRNMYSDSSHLLYLLEHTW 752
Query: 775 KIRTDLDNGFVPLTLLEITKQLT 797
K + L +L + Q+T
Sbjct: 753 KDARFILQIMCELNVLPLALQIT 775
Score = 37 (18.1 bits), Expect = 1.9e-59, Sum P(4) = 1.9e-59
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 442 RTLMGGRSERNEFLLLHAFHEKSYVLPDK 470
+T+ ++ NE + + A S+ L DK
Sbjct: 551 KTMQNAKTHENEIIAVSALVHHSFAL-DK 578
>UNIPROTKB|Q59J90 [details] [associations]
symbol:Q59J90 "DNA polymerase" species:8296 "Ambystoma
mexicanum" [GO:0000084 "S phase of mitotic cell cycle"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0003677
GO:GO:0008283 GO:GO:0003682 GO:GO:0006270 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0006303
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 HOVERGEN:HBG080008 EMBL:AB178525 Uniprot:Q59J90
Length = 1409
Score = 1087 (387.7 bits), Expect = 6.5e-171, Sum P(3) = 6.5e-171
Identities = 220/412 (53%), Positives = 287/412 (69%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T L + +I++IMCELNVLPLA+QITN+ GNV+SRTLMGGRSERNE+LLLHAF+
Sbjct: 685 LLYMLEHTWLDTKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYLLLHAFY 744
Query: 462 EKSYVLPDK-------QYXXXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFII 514
E ++++PDK Q RKKAAY+GGLVL+PK GFYDKFI+
Sbjct: 745 ENNFIVPDKPTFKKPLQNLVDEDEDIENDQGKQKKVRKKAAYAGGLVLDPKVGFYDKFIL 804
Query: 515 LMDFNSLYPSIIQEYNICFTTIP-----VRMLQDSDITTLCEYLPEHQVDTGILPSEIKK 569
L+DFNSLYPSIIQE+NICFTT+ + + + + LP+ ++ GILP EI+K
Sbjct: 805 LLDFNSLYPSIIQEFNICFTTVQRLDSNAQKMPEGEEQDDIPQLPDPDLELGILPREIRK 864
Query: 570 LVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVT 629
LVE RRQVK LMKQ +L+ DL MQYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT
Sbjct: 865 LVERRRQVKQLMKQSDLNPDLYMQYDIRQKALKLTANSMYGCLGFSFSRFYAKPLAALVT 924
Query: 630 AKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLE 689
KGREILL+T+ +V+ +N EVIYGDTDS+MI+ N + + VFK+GN++KSE NKLYKQLE
Sbjct: 925 HKGREILLHTRDMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYKQLE 984
Query: 690 LDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVIS 749
+DIDGV +GK + QE+KG+D+VRRDW LA E G ++I+
Sbjct: 985 IDIDGVFKSLLLLKKKKYAALTMEPAGDGKYVTKQELKGLDIVRRDWCDLAKETGNYIIT 1044
Query: 750 QILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +Q D ++NI + + +I ++ NG +P+ EI K LTK P+
Sbjct: 1045 QILSDQPR-----DTIVENIQKQLIEIGENVVNGSIPINQYEINKALTKDPQ 1091
Score = 536 (193.7 bits), Expect = 6.5e-171, Sum P(3) = 6.5e-171
Identities = 105/190 (55%), Positives = 133/190 (70%)
Query: 199 SLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKI 258
SLPL + +VFR ++LDA+ED Y QPG VYLFGKV+++ +H SCC+ V+NI+R +
Sbjct: 275 SLPLVIGTDGDQVFRFYWLDAYEDQYNQPGVVYLFGKVWIESAEAHVSCCLTVKNIERTV 334
Query: 259 YLLPRSEHL------KTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVP 311
YLLPR + +T PVS+ VY EF++ IA ++K++ FKS+KIEK YAF +P VP
Sbjct: 335 YLLPRETQVDLSSGKETGTPVSMMNVYQEFNERIAEKFKLMKFKSKKIEKNYAFEIPDVP 394
Query: 312 DLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE LL RKIKGPSWLE +
Sbjct: 395 ANSEYLEVRYSAELPPLPKDLKGETFSHVFGTNTSSLELFLLSRKIKGPSWLEIKTPQLS 454
Query: 372 PSRISWCKYE 381
+SWCK E
Sbjct: 455 FQPVSWCKVE 464
Score = 76 (31.8 bits), Expect = 6.5e-171, Sum P(3) = 6.5e-171
Identities = 13/15 (86%), Positives = 15/15 (100%)
Query: 159 YVEDGREIFDDDIED 173
YVEDGREIFDDD++D
Sbjct: 9 YVEDGREIFDDDLQD 23
Score = 41 (19.5 bits), Expect = 7.9e-53, Sum P(3) = 7.9e-53
Identities = 18/78 (23%), Positives = 37/78 (47%)
Query: 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ--ILDEQSYTDYSLDD-RLQNIHEHMK 774
G+MIC +I +++R L+ + + ++ I+ ++ +Y D +L + EH
Sbjct: 634 GRMICDVQISAKELIRCKSYHLSELVHQILKTERLIIPGENIRNYYSDSPQLLYMLEH-- 691
Query: 775 KIRTDLDNGFVPLTLLEI 792
T LD F+ + E+
Sbjct: 692 ---TWLDTKFILQIMCEL 706
Score = 37 (18.1 bits), Expect = 2.1e-52, Sum P(3) = 2.1e-52
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 749 SQILDEQSYTD 759
SQI DE+ Y D
Sbjct: 1213 SQITDEEKYKD 1223
>RGD|621816 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA;ISO;ISS] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=ISO;ISS] [GO:0000785 "chromatin"
evidence=ISO;ISS] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO;ISS] [GO:0003682
"chromatin binding" evidence=ISO;ISS] [GO:0003690 "double-stranded
DNA binding" evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISO;ISS;IDA;IMP] [GO:0003896 "DNA primase
activity" evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005635 "nuclear envelope" evidence=ISO;ISS] [GO:0005654
"nucleoplasm" evidence=ISO;ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IC;ISO;ISS;IDA] [GO:0005730
"nucleolus" evidence=ISO;ISS] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO;ISS;IMP] [GO:0006269
"DNA replication, synthesis of RNA primer" evidence=ISO;ISS]
[GO:0006270 "DNA replication initiation" evidence=ISO;ISS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO;ISS] [GO:0006272 "leading strand elongation"
evidence=ISO;ISS] [GO:0006273 "lagging strand elongation"
evidence=ISO;ISS] [GO:0006281 "DNA repair" evidence=ISO;ISS]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;ISS;IBA] [GO:0008283 "cell
proliferation" evidence=ISO;ISS] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix"
evidence=ISO;ISS] [GO:0017076 "purine nucleotide binding"
evidence=IMP] [GO:0019103 "pyrimidine nucleotide binding"
evidence=IMP] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:621816
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 1084 (386.6 bits), Expect = 1.1e-163, Sum P(2) = 1.1e-163
Identities = 221/400 (55%), Positives = 283/400 (70%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXX 474
+I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 758 FILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR 817
Query: 475 X-------XXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527
RKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQ
Sbjct: 818 KPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQ 877
Query: 528 EYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
E+NICFTT+ ++ +D + + E LP+ +D GILP EI+KLVE R+QVK LM
Sbjct: 878 EFNICFTTVQRVASETLKATEDEEQEQIPE-LPDPNLDMGILPREIRKLVERRKQVKQLM 936
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
KQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK
Sbjct: 937 KQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKE 996
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXX 701
+V+ +N EVIYGDTDS+MI+ N + + VFK+GN++K+E NKLYK LE+DIDGV
Sbjct: 997 MVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLL 1056
Query: 702 XXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
+G I QE+KG+D+VRRDW LA + G FVI QIL +QS
Sbjct: 1057 LKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR---- 1112
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1113 -DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1151
Score = 531 (192.0 bits), Expect = 1.1e-163, Sum P(2) = 1.1e-163
Identities = 113/259 (43%), Positives = 153/259 (59%)
Query: 131 EEVSEKEYTERVLKRQEXXXXXXXXXXXYVEDGREIF-DDDIEDVPQXXXXXXXXXXXXN 189
EEV E+E + QE E G F D + DV
Sbjct: 267 EEVDEEEPVTAKIWDQESEPVEGVKHEADPETGTTSFLDSFLPDVSCWDIDQKDENSFL- 325
Query: 190 IQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCV 249
+Q + LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+V+ +H SCCV
Sbjct: 326 LQEVQVDSNHLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWVESAKTHVSCCV 385
Query: 250 IVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKK 302
+V+NI+R +Y LPR + +T P+++ VY EFD +I+ +YKI+ FKS+ +EK
Sbjct: 386 MVKNIERTLYFLPREMKIDLNTGKETATPITMKDVYEEFDSKISAKYKIMKFKSKIVEKN 445
Query: 303 YAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSW 362
YAF +P VP+ SEYLEVRYSA+ P LP +L G+TFSHVFGT TS LE L+ RKIKGP W
Sbjct: 446 YAFEIPDVPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCW 505
Query: 363 LEFPEAEKFPSRISWCKYE 381
LE + ISWCK+E
Sbjct: 506 LEVKNPQLLNQPISWCKFE 524
Score = 153 (58.9 bits), Expect = 9.2e-124, Sum P(2) = 9.2e-124
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+
Sbjct: 34 KKGRQEALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIG 92
Query: 159 YVEDGREIFDDDIED 173
YVEDGREIFDDD+ED
Sbjct: 93 YVEDGREIFDDDLED 107
Score = 43 (20.2 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 718 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
G+MIC EI +++ + + S+L + K I E YS L + EH+
Sbjct: 694 GRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSEPSHLLYLLEHIW 753
Query: 775 KIRTDLDNGFVPLTLLEITKQLT 797
K + L +L + Q+T
Sbjct: 754 KDARFILQIMCELNVLPLALQIT 776
Score = 39 (18.8 bits), Expect = 9.7e-48, Sum P(2) = 9.7e-48
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 531 ICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 590
+CF R + D+D E LPEH+ D ++KK + R ++ K N++
Sbjct: 1399 LCF----YRYIFDADCAL--EKLPEHEKD------KLKKQFFTPRVLQDYRKVKNIAEHF 1446
Query: 591 L 591
L
Sbjct: 1447 L 1447
>UNIPROTKB|O89042 [details] [associations]
symbol:Pola1 "DNA polymerase alpha catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
RGD:621816 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 1084 (386.6 bits), Expect = 1.1e-163, Sum P(2) = 1.1e-163
Identities = 221/400 (55%), Positives = 283/400 (70%)
Query: 415 YIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXX 474
+I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ
Sbjct: 758 FILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFR 817
Query: 475 X-------XXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 527
RKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQ
Sbjct: 818 KPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQ 877
Query: 528 EYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM 581
E+NICFTT+ ++ +D + + E LP+ +D GILP EI+KLVE R+QVK LM
Sbjct: 878 EFNICFTTVQRVASETLKATEDEEQEQIPE-LPDPNLDMGILPREIRKLVERRKQVKQLM 936
Query: 582 KQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
KQ +L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK
Sbjct: 937 KQQDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKE 996
Query: 642 LVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXX 701
+V+ +N EVIYGDTDS+MI+ N + + VFK+GN++K+E NKLYK LE+DIDGV
Sbjct: 997 MVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEVNKLYKLLEIDIDGVFKSLLL 1056
Query: 702 XXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
+G I QE+KG+D+VRRDW LA + G FVI QIL +QS
Sbjct: 1057 LKKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR---- 1112
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 1113 -DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 1151
Score = 531 (192.0 bits), Expect = 1.1e-163, Sum P(2) = 1.1e-163
Identities = 113/259 (43%), Positives = 153/259 (59%)
Query: 131 EEVSEKEYTERVLKRQEXXXXXXXXXXXYVEDGREIF-DDDIEDVPQXXXXXXXXXXXXN 189
EEV E+E + QE E G F D + DV
Sbjct: 267 EEVDEEEPVTAKIWDQESEPVEGVKHEADPETGTTSFLDSFLPDVSCWDIDQKDENSFL- 325
Query: 190 IQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCV 249
+Q + LPL ++++VF+ ++LDA+ED Y QPG V+LFGKV+V+ +H SCCV
Sbjct: 326 LQEVQVDSNHLPLVKGADDEQVFQFYWLDAYEDPYNQPGVVFLFGKVWVESAKTHVSCCV 385
Query: 250 IVQNIDRKIYLLPRSEHL------KTKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKK 302
+V+NI+R +Y LPR + +T P+++ VY EFD +I+ +YKI+ FKS+ +EK
Sbjct: 386 MVKNIERTLYFLPREMKIDLNTGKETATPITMKDVYEEFDSKISAKYKIMKFKSKIVEKN 445
Query: 303 YAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSW 362
YAF +P VP+ SEYLEVRYSA+ P LP +L G+TFSHVFGT TS LE L+ RKIKGP W
Sbjct: 446 YAFEIPDVPEKSEYLEVRYSAEVPQLPQNLKGETFSHVFGTNTSSLELFLMNRKIKGPCW 505
Query: 363 LEFPEAEKFPSRISWCKYE 381
LE + ISWCK+E
Sbjct: 506 LEVKNPQLLNQPISWCKFE 524
Score = 153 (58.9 bits), Expect = 9.2e-124, Sum P(2) = 9.2e-124
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K + A ++LK K G K+KYE +VYEEV E++Y++ V RQ+
Sbjct: 34 KKGRQEALERLKKAKA-GEKYKYEVEDLTSVYEEVDEEQYSKLVQARQDDDWIVDDDGIG 92
Query: 159 YVEDGREIFDDDIED 173
YVEDGREIFDDD+ED
Sbjct: 93 YVEDGREIFDDDLED 107
Score = 43 (20.2 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 718 GKMICSQEIKGVDVVR-RDW--SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
G+MIC EI +++ + + S+L + K I E YS L + EH+
Sbjct: 694 GRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTENIRNMYSEPSHLLYLLEHIW 753
Query: 775 KIRTDLDNGFVPLTLLEITKQLT 797
K + L +L + Q+T
Sbjct: 754 KDARFILQIMCELNVLPLALQIT 776
Score = 39 (18.8 bits), Expect = 9.7e-48, Sum P(2) = 9.7e-48
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 531 ICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 590
+CF R + D+D E LPEH+ D ++KK + R ++ K N++
Sbjct: 1399 LCF----YRYIFDADCAL--EKLPEHEKD------KLKKQFFTPRVLQDYRKVKNIAEHF 1446
Query: 591 L 591
L
Sbjct: 1447 L 1447
>FB|FBgn0259113 [details] [associations]
symbol:DNApol-alpha180 "DNA polymerase alpha 180kD"
species:7227 "Drosophila melanogaster" [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS;NAS;IDA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS;NAS;IDA]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=NAS] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0051539
GO:GO:0001882 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
EMBL:D90310 EMBL:S48157 EMBL:AB011813 EMBL:AY070529 PIR:S28079
RefSeq:NP_536736.2 UniGene:Dm.1592 ProteinModelPortal:P26019
SMR:P26019 DIP:DIP-23937N IntAct:P26019 MINT:MINT-206832
STRING:P26019 PaxDb:P26019 EnsemblMetazoa:FBtr0084115 GeneID:42553
KEGG:dme:Dmel_CG6349 CTD:42553 FlyBase:FBgn0259113
OrthoDB:EOG4MPG50 PhylomeDB:P26019 ChEMBL:CHEMBL6039
GenomeRNAi:42553 NextBio:829396 Bgee:P26019 GermOnline:CG6349
Uniprot:P26019
Length = 1488
Score = 1122 (400.0 bits), Expect = 2.6e-157, Sum P(3) = 2.6e-157
Identities = 227/434 (52%), Positives = 298/434 (68%)
Query: 378 CKYEVQCNQMEKIR-SKQGLI--YLIG--IVEFIKFTMLHSSYIIKIMCELNVLPLAIQI 432
CK ++ + E++ + L+ Y G I + I TM +SY++++MCELN++PLA+QI
Sbjct: 731 CKQVLKLKESERMEVNADDLLEMYEKGESITKLISLTMQDNSYLLRLMCELNIMPLALQI 790
Query: 433 TNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQ-----YXXXXXXXXXXXXXXX 487
TN+CGN ++RTL GGRSERNEFLLLHAFHEK+Y++PDK+
Sbjct: 791 TNICGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDKKPVSKRSGAGDTDATLSGADAT 850
Query: 488 XXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDIT 547
+KKAAY+GGLVLEP +G Y+K+++LMDFNSLYPSIIQEYNICFTT+ + D ++
Sbjct: 851 MQTKKKAAYAGGLVLEPMRGLYEKYVLLMDFNSLYPSIIQEYNICFTTVQQPVDAD-ELP 909
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANS 607
TL P+ + + GILP ++K+LVESR++VK LM P+LS +L MQY IRQ ALKLTANS
Sbjct: 910 TL----PDSKTEPGILPLQLKRLVESRKEVKKLMAAPDLSPELQMQYHIRQMALKLTANS 965
Query: 608 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDY 667
MYGCLGF +SRFFAQ LAALVT KGREIL NT+ LV+ +NY+V+YGDTDSLMI+ N+ DY
Sbjct: 966 MYGCLGFAHSRFFAQHLAALVTHKGREILTNTQQLVQKMNYDVVYGDTDSLMINTNITDY 1025
Query: 668 DSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIK 727
D V+KIG+ IK NKLYKQLELDIDGV G + QE K
Sbjct: 1026 DQVYKIGHNIKQSVNKLYKQLELDIDGVFGCLLLLKKKKYAAIKLSKDSKGNLRREQEHK 1085
Query: 728 GVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPL 787
G+D+VRRDWSQLA GK V+ ++L E+ L+++L +H ++KI+T + G VPL
Sbjct: 1086 GLDIVRRDWSQLAVMVGKAVLDEVLSEKP-----LEEKLDAVHAQLEKIKTQIAEGVVPL 1140
Query: 788 TLLEITKQLTKAPE 801
L ITKQLT+ P+
Sbjct: 1141 PLFVITKQLTRTPQ 1154
Score = 334 (122.6 bits), Expect = 2.6e-157, Sum P(3) = 2.6e-157
Identities = 76/193 (39%), Positives = 111/193 (57%)
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK---- 268
R ++ +A+ED K PG V+LFG+ S C+ VQNI+R +YLLPR L
Sbjct: 363 RFWYWEAYEDPVKMPGEVFLFGRTA-----DGKSVCLRVQNINRVLYLLPRQFLLDPISK 417
Query: 269 --TKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--VPDLSEYLEVRYSA 323
TK+ V++A +Y EFD ++A Q K+ F+SRK+ K +A + G VP +YLEV Y
Sbjct: 418 EPTKQKVTVADIYKEFDSEVANQLKLEFFRSRKVTKSFAHHAIGIEVPQSCDYLEVHYDG 477
Query: 324 K--CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
K P L +D ++ +H+FG T+ LE LL+RKIKGP WL+ + P+ +SWC E
Sbjct: 478 KKPLPNLSADKKYNSIAHIFGATTNALERFLLDRKIKGPCWLQVTGFKVSPTPMSWCNTE 537
Query: 382 VQCNQMEKIRSKQ 394
V + + + Q
Sbjct: 538 VTLTEPKNVELVQ 550
Score = 114 (45.2 bits), Expect = 2.6e-157, Sum P(3) = 2.6e-157
Identities = 27/76 (35%), Positives = 41/76 (53%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXX 156
+DK +FAA ++L+ LKG K K E D+ VY+ V E+EY +R ++
Sbjct: 15 VDKNGRFAAMERLRQLKGTKNKCKVEDQVDD-VYDVVDEREYAKRAQEKY-GDDWIEEDG 72
Query: 157 XXYVEDGREIFDDDIE 172
Y ED R+ F+D+ E
Sbjct: 73 TGYAEDLRDFFEDEDE 88
Score = 47 (21.6 bits), Expect = 3.0e-150, Sum P(3) = 3.0e-150
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 85 YIQNSLDSNICLIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLK 144
+ N +D + CL D N+F + + K K E T+ V E+ + K+ T K
Sbjct: 261 FSDNEMDFS-CLDDDENQFDVEKTQQTEKVSQTKTAAEKTSQSKVAEKSAPKKETTGSPK 319
Query: 145 RQE 147
E
Sbjct: 320 ESE 322
>UNIPROTKB|Q9NAH1 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 HSSP:Q56366
GeneID:176544 KEGG:cel:CELE_Y47D3A.29 CTD:176544
RefSeq:NP_001255109.1 ProteinModelPortal:Q9NAH1 SMR:Q9NAH1
IntAct:Q9NAH1 MINT:MINT-6669806 STRING:Q9NAH1
EnsemblMetazoa:Y47D3A.29a UCSC:Y47D3A.29 WormBase:Y47D3A.29a
InParanoid:Q9NAH1 NextBio:893018 ArrayExpress:Q9NAH1 Uniprot:Q9NAH1
Length = 1428
Score = 891 (318.7 bits), Expect = 1.8e-131, Sum P(3) = 1.8e-131
Identities = 189/385 (49%), Positives = 248/385 (64%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXX 476
++I+ LN LPL IQI+ + G + SRT+MGGR+ERNE+LLLHAF + + PDK
Sbjct: 738 LRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKYNSSES 797
Query: 477 XXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
KA YSGGLVLEPKKG Y+ I+L+DFNSLYPSIIQEYNIC+TT+
Sbjct: 798 KKKKEESQEGDEKKSGKAQYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNICYTTL 857
Query: 537 PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 596
D ++ +P+ G+LP EI+KLVE RR VK+LMK + Q DI
Sbjct: 858 EYSKDSDEQLS-----VPQSTDIEGVLPREIRKLVECRRDVKSLMKSERNEAKK-KQMDI 911
Query: 597 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 656
RQ ALKLTANSMYGCLGF SRF+A+PLAALVTAKGREIL+++K LVE + Y V+YGDTD
Sbjct: 912 RQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEKMGYSVVYGDTD 971
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 716
S+MI+ N D + K+GN+IK NK ++ LELD+DGV
Sbjct: 972 SIMINTNSVDLVAAKKLGNEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALTINPDT 1031
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 776
+ ++E+KG+D+VRRDWSQLA E G V+ +ILD S T D+ + +I + +++I
Sbjct: 1032 K---VEAKELKGLDIVRRDWSQLAKETGTAVVDKILDA-SLTR---DEMVSSIDDLLREI 1084
Query: 777 RTDLDNGFVPLTLLEITKQLTKAPE 801
R LD+G VPL + +I+KQLT+ PE
Sbjct: 1085 RAKLDSGTVPLEMFQISKQLTRNPE 1109
Score = 358 (131.1 bits), Expect = 1.8e-131, Sum P(3) = 1.8e-131
Identities = 76/188 (40%), Positives = 117/188 (62%)
Query: 210 KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 269
K RM+++DA+ED++K GTVYLFGKV N+ +C ++V+NI RK+Y +PR+++L T
Sbjct: 324 KAIRMYWIDAYEDVHKANGTVYLFGKVKTS-GNAWETCSIVVKNICRKVYFMPRTKNLST 382
Query: 270 KEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKY----AFNLPGVPDLSEYLEVRYSAK 324
E S+A+++ E D + ++ +FK + +EK+ +F G S +EV Y A+
Sbjct: 383 GEESSLAELHKEIGDVLRNKFNTHEFKCKMVEKELIRDESFGY-GCGTKSPLMEVLYPAE 441
Query: 325 CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQC 384
LPSDL GDTFS+ F T + LE LL+E+K GP W+E ++ S CKYE +
Sbjct: 442 KGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYNYSDPKAKTSNCKYEFEV 501
Query: 385 NQMEKIRS 392
+ MEK+R+
Sbjct: 502 D-MEKMRN 508
Score = 99 (39.9 bits), Expect = 1.8e-131, Sum P(3) = 1.8e-131
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K+ + +A ++LK + G ++ E E+VY+ V + EY + V KRQ+
Sbjct: 25 KSKELSAIEQLKLARSTGKAYRPELDV-EDVYDTVDDDEYEKIVAKRQKDNFIVDDDGMG 83
Query: 159 YVEDGREIFDDDIED 173
YV++G + F+DD ED
Sbjct: 84 YVDNGVD-FEDDYED 97
Score = 38 (18.4 bits), Expect = 7.5e-100, Sum P(4) = 7.5e-100
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 388 EKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
E + G +YL G V+ S ++K +C
Sbjct: 335 EDVHKANGTVYLFGKVKTSGNAWETCSIVVKNIC 368
Score = 37 (18.1 bits), Expect = 7.5e-100, Sum P(4) = 7.5e-100
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 269 TKEPVSIAQVYSEFD 283
TK+P+ + V +EFD
Sbjct: 135 TKKPIDESVVKAEFD 149
>WB|WBGene00012936 [details] [associations]
symbol:Y47D3A.29a species:6239 "Caenorhabditis elegans"
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0035046 "pronuclear migration" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0008340 GO:GO:0009792
GO:GO:0035046 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 EMBL:AL117202 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 891 (318.7 bits), Expect = 2.5e-131, Sum P(3) = 2.5e-131
Identities = 189/385 (49%), Positives = 248/385 (64%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXX 476
++I+ LN LPL IQI+ + G + SRT+MGGR+ERNE+LLLHAF + + PDK
Sbjct: 738 LRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKYNSSES 797
Query: 477 XXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
KA YSGGLVLEPKKG Y+ I+L+DFNSLYPSIIQEYNIC+TT+
Sbjct: 798 KKKKEESQEGDEKKSGKAQYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNICYTTL 857
Query: 537 PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 596
D ++ +P+ G+LP EI+KLVE RR VK+LMK + Q DI
Sbjct: 858 EYSKDSDEQLS-----VPQSTDIEGVLPREIRKLVECRRDVKSLMKSERNEAKK-KQMDI 911
Query: 597 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 656
RQ ALKLTANSMYGCLGF SRF+A+PLAALVTAKGREIL+++K LVE + Y V+YGDTD
Sbjct: 912 RQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEKMGYSVVYGDTD 971
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 716
S+MI+ N D + K+GN+IK NK ++ LELD+DGV
Sbjct: 972 SIMINTNSVDLVAAKKLGNEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALTINPDT 1031
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 776
+ ++E+KG+D+VRRDWSQLA E G V+ +ILD S T D+ + +I + +++I
Sbjct: 1032 K---VEAKELKGLDIVRRDWSQLAKETGTAVVDKILDA-SLTR---DEMVSSIDDLLREI 1084
Query: 777 RTDLDNGFVPLTLLEITKQLTKAPE 801
R LD+G VPL + +I+KQLT+ PE
Sbjct: 1085 RAKLDSGTVPLEMFQISKQLTRNPE 1109
Score = 358 (131.1 bits), Expect = 2.5e-131, Sum P(3) = 2.5e-131
Identities = 76/188 (40%), Positives = 117/188 (62%)
Query: 210 KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 269
K RM+++DA+ED++K GTVYLFGKV N+ +C ++V+NI RK+Y +PR+++L T
Sbjct: 324 KAIRMYWIDAYEDVHKANGTVYLFGKVKTS-GNAWETCSIVVKNICRKVYFMPRTKNLST 382
Query: 270 KEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKY----AFNLPGVPDLSEYLEVRYSAK 324
E S+A+++ E D + ++ +FK + +EK+ +F G S +EV Y A+
Sbjct: 383 GEESSLAELHKEIGDVLRNKFNTHEFKCKMVEKELIRDESFGY-GCGTKSPLMEVLYPAE 441
Query: 325 CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQC 384
LPSDL GDTFS+ F T + LE LL+E+K GP W+E ++ S CKYE +
Sbjct: 442 KGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYNYSDPKAKTSNCKYEFEV 501
Query: 385 NQMEKIRS 392
+ MEK+R+
Sbjct: 502 D-MEKMRN 508
Score = 99 (39.9 bits), Expect = 2.5e-131, Sum P(3) = 2.5e-131
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K+ + +A ++LK + G ++ E E+VY+ V + EY + V KRQ+
Sbjct: 25 KSKELSAIEQLKLARSTGKAYRPELDV-EDVYDTVDDDEYEKIVAKRQKDNFIVDDDGMG 83
Query: 159 YVEDGREIFDDDIED 173
YV++G + F+DD ED
Sbjct: 84 YVDNGVD-FEDDYED 97
Score = 38 (18.4 bits), Expect = 1.2e-99, Sum P(4) = 1.2e-99
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 388 EKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
E + G +YL G V+ S ++K +C
Sbjct: 335 EDVHKANGTVYLFGKVKTSGNAWETCSIVVKNIC 368
Score = 37 (18.1 bits), Expect = 1.2e-99, Sum P(4) = 1.2e-99
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 269 TKEPVSIAQVYSEFD 283
TK+P+ + V +EFD
Sbjct: 135 TKKPIDESVVKAEFD 149
>UNIPROTKB|C7IVS4 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 891 (318.7 bits), Expect = 2.5e-131, Sum P(3) = 2.5e-131
Identities = 189/385 (49%), Positives = 248/385 (64%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXX 476
++I+ LN LPL IQI+ + G + SRT+MGGR+ERNE+LLLHAF + + PDK
Sbjct: 738 LRIVVRLNALPLYIQISQIVGGIASRTMMGGRAERNEYLLLHAFEKADLIAPDKYNSSES 797
Query: 477 XXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
KA YSGGLVLEPKKG Y+ I+L+DFNSLYPSIIQEYNIC+TT+
Sbjct: 798 KKKKEESQEGDEKKSGKAQYSGGLVLEPKKGLYETLILLLDFNSLYPSIIQEYNICYTTL 857
Query: 537 PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 596
D ++ +P+ G+LP EI+KLVE RR VK+LMK + Q DI
Sbjct: 858 EYSKDSDEQLS-----VPQSTDIEGVLPREIRKLVECRRDVKSLMKSERNEAKK-KQMDI 911
Query: 597 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 656
RQ ALKLTANSMYGCLGF SRF+A+PLAALVTAKGREIL+++K LVE + Y V+YGDTD
Sbjct: 912 RQMALKLTANSMYGCLGFQYSRFYAKPLAALVTAKGREILMHSKDLVEKMGYSVVYGDTD 971
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 716
S+MI+ N D + K+GN+IK NK ++ LELD+DGV
Sbjct: 972 SIMINTNSVDLVAAKKLGNEIKKAVNKCHRLLELDLDGVFKRMLLLKKKKYAALTINPDT 1031
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 776
+ ++E+KG+D+VRRDWSQLA E G V+ +ILD S T D+ + +I + +++I
Sbjct: 1032 K---VEAKELKGLDIVRRDWSQLAKETGTAVVDKILDA-SLTR---DEMVSSIDDLLREI 1084
Query: 777 RTDLDNGFVPLTLLEITKQLTKAPE 801
R LD+G VPL + +I+KQLT+ PE
Sbjct: 1085 RAKLDSGTVPLEMFQISKQLTRNPE 1109
Score = 358 (131.1 bits), Expect = 2.5e-131, Sum P(3) = 2.5e-131
Identities = 76/188 (40%), Positives = 117/188 (62%)
Query: 210 KVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKT 269
K RM+++DA+ED++K GTVYLFGKV N+ +C ++V+NI RK+Y +PR+++L T
Sbjct: 324 KAIRMYWIDAYEDVHKANGTVYLFGKVKTS-GNAWETCSIVVKNICRKVYFMPRTKNLST 382
Query: 270 KEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKY----AFNLPGVPDLSEYLEVRYSAK 324
E S+A+++ E D + ++ +FK + +EK+ +F G S +EV Y A+
Sbjct: 383 GEESSLAELHKEIGDVLRNKFNTHEFKCKMVEKELIRDESFGY-GCGTKSPLMEVLYPAE 441
Query: 325 CPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQC 384
LPSDL GDTFS+ F T + LE LL+E+K GP W+E ++ S CKYE +
Sbjct: 442 KGKLPSDLKGDTFSNTFNTSVTPLERLLIEKKFMGPGWIELYNYSDPKAKTSNCKYEFEV 501
Query: 385 NQMEKIRS 392
+ MEK+R+
Sbjct: 502 D-MEKMRN 508
Score = 99 (39.9 bits), Expect = 2.5e-131, Sum P(3) = 2.5e-131
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K+ + +A ++LK + G ++ E E+VY+ V + EY + V KRQ+
Sbjct: 25 KSKELSAIEQLKLARSTGKAYRPELDV-EDVYDTVDDDEYEKIVAKRQKDNFIVDDDGMG 83
Query: 159 YVEDGREIFDDDIED 173
YV++G + F+DD ED
Sbjct: 84 YVDNGVD-FEDDYED 97
Score = 38 (18.4 bits), Expect = 1.2e-99, Sum P(4) = 1.2e-99
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 388 EKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMC 421
E + G +YL G V+ S ++K +C
Sbjct: 335 EDVHKANGTVYLFGKVKTSGNAWETCSIVVKNIC 368
Score = 37 (18.1 bits), Expect = 1.2e-99, Sum P(4) = 1.2e-99
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 269 TKEPVSIAQVYSEFD 283
TK+P+ + V +EFD
Sbjct: 135 TKKPIDESVVKAEFD 149
>UNIPROTKB|Q7SBT9 [details] [associations]
symbol:NCU07870 "DNA polymerase" species:367110 "Neurospora
crassa OR74A" [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
EMBL:AABX02000040 RefSeq:XP_963131.2 STRING:Q7SBT9
EnsemblFungi:EFNCRT00000007540 GeneID:3879279 KEGG:ncr:NCU07870
Uniprot:Q7SBT9
Length = 1479
Score = 801 (287.0 bits), Expect = 1.1e-113, Sum P(3) = 1.1e-113
Identities = 173/403 (42%), Positives = 241/403 (59%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++++I + +I + +LPL +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 753 GLMDYISHAETDTYFIAALALRTQILPLTKVLTNLAGNSWARTLTGTRAERNEYILLHEF 812
Query: 461 HEKSYVLPDKQYXXXXXXXXXXXXXXXXXX--RKKAAYSGGLVLEPKKGFYDKFIILMDF 518
H YV+PDKQ +KK Y GGLV EP+KG YDKF+++MDF
Sbjct: 813 HRNKYVVPDKQTFKGRQRIEEENAEEEGGEGGKKKDKYKGGLVFEPEKGLYDKFVLVMDF 872
Query: 519 NSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVK 578
NSLYPSIIQEYNICFTT+ L + D + E +P+ Q GILP I LV RRQVK
Sbjct: 873 NSLYPSIIQEYNICFTTVDRTSLSEDD-DAVPE-VPKEQAQ-GILPKLIATLVSRRRQVK 929
Query: 579 ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLN 638
+LMK N + + L +DI+Q ALKLTANSMYGCLG+ SRF+A+PLA L T KGREIL +
Sbjct: 930 SLMKDKNATPEELATWDIKQLALKLTANSMYGCLGYTKSRFYARPLAVLTTYKGREILRS 989
Query: 639 TKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXX 698
TK L E+ + +VIYGDTDS+MI+ N ++ ++G++ K N+ Y+ LE+DID V
Sbjct: 990 TKELAESNSLQVIYGDTDSVMINANKDNVAEALRVGHEFKKAVNERYRLLEIDIDNVFRR 1049
Query: 699 XXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYT 758
NGK + E+KG+D+ RR++ L+ E ++++IL T
Sbjct: 1050 ILLQAKKKYAAINMVEV-NGKWVEKMEVKGLDMKRREYCGLSKEISNRILTEILSGDD-T 1107
Query: 759 DYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+ S+ Q IHE+++ I + G VP+ I+ QL KAP+
Sbjct: 1108 EVSV----QRIHEYLRDISAKMREGAVPVQKYIISTQLGKAPK 1146
Score = 297 (109.6 bits), Expect = 1.1e-113, Sum P(3) = 1.1e-113
Identities = 67/161 (41%), Positives = 94/161 (58%)
Query: 228 GTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK----TKEPVSIAQVYSEFD 283
G++ LFGKV K+ ++ SC V V NI RK++ LPR ++ T E V + VY+E D
Sbjct: 362 GSLCLFGKVLNKKTKTYVSCFVKVDNILRKLFFLPRKYRVRGGEETTEEVEMMDVYNEVD 421
Query: 284 QIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGT 343
+I T+ + K + +KYAF LP VP S+YL++ Y PA+ G+TFSHVFGT
Sbjct: 422 EIMTKMNVGMHKIKACTRKYAFELPDVPKESQYLKLLYPYTKPAMEPTHKGETFSHVFGT 481
Query: 344 KTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEV 382
T+ E +L + I GP WL+ +A+ F S S CK EV
Sbjct: 482 NTALFEQFVLWKNIMGPCWLKIEDAD-FTSLRNASHCKLEV 521
Score = 88 (36.0 bits), Expect = 1.1e-113, Sum P(3) = 1.1e-113
Identities = 23/73 (31%), Positives = 37/73 (50%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEXXXXXXXX 155
+ K +K+A +L++L+ G K Y+ + +YEEV E +Y + V R E
Sbjct: 5 VAKRDKYA---ELRELRQSGKKKTYDVGEIDELYEEVDENQYKKIVRDRLNEDDFVVDDN 61
Query: 156 XXXYVEDGREIFD 168
Y +DGRE +D
Sbjct: 62 GEGYADDGREEWD 74
>POMBASE|SPAC3H5.06c [details] [associations]
symbol:pol1 "DNA polymerase alpha catalytic subunit"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IGI] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IGI] [GO:0006270
"DNA replication initiation" evidence=IMP] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IMP] [GO:0043596 "nuclear
replication fork" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
PomBase:SPAC3H5.06c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0051539 GO:GO:0003688
GO:GO:0000790 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0000723 GO:GO:0033314 GO:GO:0003887 KO:K02320 GO:GO:0006269
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 EMBL:X58299
EMBL:X69673 EMBL:AB027936 PIR:S15993 RefSeq:NP_594186.1
ProteinModelPortal:P28040 IntAct:P28040 STRING:P28040
EnsemblFungi:SPAC3H5.06c.1 GeneID:2543629 KEGG:spo:SPAC3H5.06c
HOGENOM:HOG000163524 OMA:GSGTDME OrthoDB:EOG4K0TWK NextBio:20804635
GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Uniprot:P28040
Length = 1405
Score = 769 (275.8 bits), Expect = 5.5e-112, Sum P(3) = 5.5e-112
Identities = 167/421 (39%), Positives = 241/421 (57%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+++++ + + +I + ++ +L L+ +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 727 GLLDYLVHCEIDTFFIAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTRAERNEYILLHEF 786
Query: 461 HEKSYVLPDKQYXXXXXXXXXXXXXXX---XXXRKKAAYSGGLVLEPKKGFYDKFIILMD 517
+ Y++PDKQ +KK Y GGLV EP+KG Y+ I++MD
Sbjct: 787 KKNGYIVPDKQQSIRRHAEAFGAEDGLQEESLGKKKDKYKGGLVFEPQKGLYETCILVMD 846
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ R +SD P + GI P I LVE RRQ+
Sbjct: 847 FNSLYPSIIQEYNICFTTVD-RSPSNSDSDDQIPDTPSASANQGIFPRLIANLVERRRQI 905
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K L+K + + +Q+DI+Q+ALKLTANSMYGCLG+ SRF+A+PLA L+T KGRE L+
Sbjct: 906 KGLLKDNSATPTQRLQWDIQQQALKLTANSMYGCLGYTKSRFYARPLAVLITYKGREALM 965
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXX 697
NTK L + + +VIYGDTDS+M++ NV D + +IGN+ K + N+ Y +LE+DID V
Sbjct: 966 NTKELADQMGLQVIYGDTDSVMLNTNVTDKNHALRIGNEFKEKVNERYSKLEIDIDNVYQ 1025
Query: 698 XXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
GK + ++KG+D+ RR++ LA EA KF + QIL +
Sbjct: 1026 RMLLHAKKKYAALQLDS--QGKP--NLDVKGLDMKRREFCTLAKEASKFCLDQILSGEL- 1080
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE---GGKVC-ITQIRLS 813
+ ++NIH ++ + NG P I +L K PE GK Q+ L
Sbjct: 1081 ----TETVIENIHSYLMDFSEKMRNGKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVALK 1136
Query: 814 R 814
+
Sbjct: 1137 K 1137
Score = 326 (119.8 bits), Expect = 5.5e-112, Sum P(3) = 5.5e-112
Identities = 72/195 (36%), Positives = 110/195 (56%)
Query: 201 PLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYL 260
P E+ +F F++D + ++Y G++ LFGKV+ K + SC + V I R +Y
Sbjct: 320 PSDVTEEDGSLF-FFWMD-YTEMY---GSLCLFGKVYDKATKQYVSCFLKVDGIMRSLYF 374
Query: 261 LPRSEHLKTKEPVSIAQVYSEFDQIA---TQYKILDFKSRKIEKKYAFNLPGVPDLSEYL 317
LPR E AQ +D++A ++ + ++KSR + KYAF L VP ++YL
Sbjct: 375 LPRPSSSSVSEDSIAAQTKDVYDEVANLLSKRGVKEWKSRVSKYKYAFELEDVPRTADYL 434
Query: 318 EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RI 375
EV YS PALP+DL+G +FSHVFGT T+ E +L R++ GP WL+ + F +
Sbjct: 435 EVIYSYSYPALPTDLTGSSFSHVFGTNTALFEQFVLSRRVMGPCWLKIQQPN-FDAVKNA 493
Query: 376 SWCKYEVQCNQMEKI 390
SWC+ E+ C+ + I
Sbjct: 494 SWCRVEIGCSSPQNI 508
Score = 74 (31.1 bits), Expect = 5.5e-112, Sum P(3) = 5.5e-112
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 97 IDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKR-QEXXXXXXXX 155
I + +FA + L+ G+ YE +E +Y+ VSE+EY + V +R E
Sbjct: 8 IKPSQRFAELRALRQA-GKTRASTYESKENEELYDNVSEEEYRKIVRQRLDEDDFVVDDN 66
Query: 156 XXXYVEDGREIFD 168
YV++G + +D
Sbjct: 67 GAGYVDNGYDEWD 79
>UNIPROTKB|I3LIH4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSSSCT00000027952 OMA:ESHETTT Uniprot:I3LIH4
Length = 497
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 224/413 (54%), Positives = 290/413 (70%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
++ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 50 LLYLLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 109
Query: 462 EKSYVLPDKQYXXX-------XXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFII 514
E +Y++PDKQ RKKAAYSGGLVL+PK GFYDKFI+
Sbjct: 110 ENNYIVPDKQIFRKPQQKLGDEDEDIDGDASKYKKGRKKAAYSGGLVLDPKVGFYDKFIL 169
Query: 515 LMDFNSLYPSIIQEYNICFTTIP------VRMLQDSDITTLCEYLPEHQVDTGILPSEIK 568
L+DFNSLYPSIIQE+NICFTT+ ++ +D + + E LP+ ++ GILP EI+
Sbjct: 170 LLDFNSLYPSIIQEFNICFTTVQRVASEAEKVTEDGEQEQIPE-LPDPGLEMGILPREIR 228
Query: 569 KLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALV 628
KLVE RRQVK LMKQP+L+ DL++QYDIRQKALKLTANSMYGCLGF SRF+A+PLAALV
Sbjct: 229 KLVERRRQVKQLMKQPDLNPDLVLQYDIRQKALKLTANSMYGCLGFSYSRFYAKPLAALV 288
Query: 629 TAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQL 688
T KGREIL++TK +V+ +N EVIYGDTDS+MI+ N N + VFK+GN++KSE NKLYK L
Sbjct: 289 TYKGREILMHTKEMVQKMNLEVIYGDTDSIMINTNSNSLEEVFKLGNKVKSEVNKLYKLL 348
Query: 689 ELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVI 748
E+DIDG+ +G I QE+KG+D++RRDW LA + G FVI
Sbjct: 349 EIDIDGIFKSLLLLKKKKYAALVVEPTSDGNYITKQEVKGLDIIRRDWCDLAKDTGNFVI 408
Query: 749 SQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
QIL +QS D ++NI + + +I ++ NG VP++ EI K LTK P+
Sbjct: 409 GQILSDQSR-----DTIVENIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQ 456
>ASPGD|ASPL0000000737 [details] [associations]
symbol:AN10755 species:162425 "Emericella nidulans"
[GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:BN001301 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EnsemblFungi:CADANIAT00007097 Uniprot:C8V3I8
Length = 1459
Score = 745 (267.3 bits), Expect = 7.2e-111, Sum P(3) = 7.2e-111
Identities = 158/404 (39%), Positives = 236/404 (58%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+V F+ + +I ++ +L +L L +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 742 GLVNFVTHCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 801
Query: 461 HEKSYVLPDK---QYXXXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMD 517
++ Y+ PDK + +KK Y GGLV EP++G YD+++++MD
Sbjct: 802 YKNKYICPDKYSSKLQKAEEIAQEGDEDDATDKKKKDKYKGGLVFEPERGLYDRYVLVMD 861
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 862 FNSLYPSIIQEYNICFTTVDRTSSAENENDEKVPEVPASDAEQGILPRLIATLVGRRREV 921
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 922 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 981
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXX 697
+TK LVE+ VIYGDTDS+MI+ N++ K+G ++K+ N+ YK LE+DID V
Sbjct: 982 STKELVESKQLRVIYGDTDSVMINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFR 1041
Query: 698 XXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+GK + E+KG+D+ RR++ L+ EA + ++++IL S
Sbjct: 1042 RLLLHAKKKYAAINMTEV-DGKYVDKLEVKGLDMKRREYCALSKEASQRLLNEIL---SG 1097
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L L +H++++++ ++ +P+ I +L+K PE
Sbjct: 1098 DDQELV--LNRVHDYLRELAGNMREYTIPVQKYVIYTKLSKRPE 1139
Score = 343 (125.8 bits), Expect = 7.2e-111, Sum P(3) = 7.2e-111
Identities = 75/179 (41%), Positives = 108/179 (60%)
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK---- 268
R F+LD + ++ G++ LFGKV K+N S++S V V +I RK+Y LPR K
Sbjct: 343 RFFWLD-YTEVN---GSLCLFGKVKNKQNGSYASAFVKVDSILRKLYFLPREYRHKGGRE 398
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPAL 328
T E V + VY E DQ+ ++ ++ K + +KYAF +PG+P +EYL++ Y PAL
Sbjct: 399 TDEEVDMEDVYHEVDQMMSRLRVGMHKIKACTRKYAFEMPGIPKEAEYLKLLYPYDKPAL 458
Query: 329 PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
P D G+TFSHVFGT TS E +L + I GP WL+ EA+ + SWCK+E Q ++
Sbjct: 459 PMDTKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADFSAVNNASWCKFECQTSK 517
Score = 73 (30.8 bits), Expect = 7.2e-111, Sum P(3) = 7.2e-111
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 104 AAFQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR-QEXXXXXXXXXXXYV 160
A +L+ L+ G K YE ++YEEV + Y + + R E Y
Sbjct: 6 AKLAELRALRAAGKKRLSTYEVEEQGDIYEEVDDDGYKKIIRNRLDEDDFVVDDNGEGYA 65
Query: 161 EDGREIFDD 169
+DGRE++++
Sbjct: 66 DDGREVWNE 74
>UNIPROTKB|Q5B0J8 [details] [associations]
symbol:AN5932.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004399 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACD01000101
GO:GO:0009228 GO:GO:0008408 GO:GO:0006303 InterPro:IPR013749
Pfam:PF08543 GO:GO:0003887 KO:K02320 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Gene3D:1.20.910.10 InterPro:IPR016084 SUPFAM:SSF48613
InterPro:IPR004305 Pfam:PF03070 GO:GO:0008972 TIGRFAMs:TIGR00097
RefSeq:XP_663536.1 ProteinModelPortal:Q5B0J8 STRING:Q5B0J8
GeneID:2871177 KEGG:ani:AN5932.2 Uniprot:Q5B0J8
Length = 2019
Score = 745 (267.3 bits), Expect = 8.0e-110, Sum P(3) = 8.0e-110
Identities = 158/404 (39%), Positives = 236/404 (58%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G+V F+ + +I ++ +L +L L +TN+ GN +RTL G R+ERNE++LLH F
Sbjct: 742 GLVNFVTHCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEF 801
Query: 461 HEKSYVLPDK---QYXXXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMD 517
++ Y+ PDK + +KK Y GGLV EP++G YD+++++MD
Sbjct: 802 YKNKYICPDKYSSKLQKAEEIAQEGDEDDATDKKKKDKYKGGLVFEPERGLYDRYVLVMD 861
Query: 518 FNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQV 577
FNSLYPSIIQEYNICFTT+ +++ +P + GILP I LV RR+V
Sbjct: 862 FNSLYPSIIQEYNICFTTVDRTSSAENENDEKVPEVPASDAEQGILPRLIATLVGRRREV 921
Query: 578 KALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILL 637
K LMK + + L +D +Q A KLTANSMYGCLG+ SRF+A+PLA L T KGREIL
Sbjct: 922 KKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYARPLAMLTTFKGREILR 981
Query: 638 NTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXX 697
+TK LVE+ VIYGDTDS+MI+ N++ K+G ++K+ N+ YK LE+DID V
Sbjct: 982 STKELVESKQLRVIYGDTDSVMINTNMDTISDALKVGEELKTAVNERYKLLEIDIDNVFR 1041
Query: 698 XXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
+GK + E+KG+D+ RR++ L+ EA + ++++IL S
Sbjct: 1042 RLLLHAKKKYAAINMTEV-DGKYVDKLEVKGLDMKRREYCALSKEASQRLLNEIL---SG 1097
Query: 758 TDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
D L L +H++++++ ++ +P+ I +L+K PE
Sbjct: 1098 DDQELV--LNRVHDYLRELAGNMREYTIPVQKYVIYTKLSKRPE 1139
Score = 343 (125.8 bits), Expect = 8.0e-110, Sum P(3) = 8.0e-110
Identities = 75/179 (41%), Positives = 108/179 (60%)
Query: 213 RMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLK---- 268
R F+LD + ++ G++ LFGKV K+N S++S V V +I RK+Y LPR K
Sbjct: 343 RFFWLD-YTEVN---GSLCLFGKVKNKQNGSYASAFVKVDSILRKLYFLPREYRHKGGRE 398
Query: 269 TKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPAL 328
T E V + VY E DQ+ ++ ++ K + +KYAF +PG+P +EYL++ Y PAL
Sbjct: 399 TDEEVDMEDVYHEVDQMMSRLRVGMHKIKACTRKYAFEMPGIPKEAEYLKLLYPYDKPAL 458
Query: 329 PSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQ 386
P D G+TFSHVFGT TS E +L + I GP WL+ EA+ + SWCK+E Q ++
Sbjct: 459 PMDTKGETFSHVFGTNTSLFEQFVLWKNIMGPCWLKIEEADFSAVNNASWCKFECQTSK 517
Score = 73 (30.8 bits), Expect = 8.0e-110, Sum P(3) = 8.0e-110
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 104 AAFQKLKDLKGQGVKH--KYEFTADENVYEEVSEKEYTERVLKR-QEXXXXXXXXXXXYV 160
A +L+ L+ G K YE ++YEEV + Y + + R E Y
Sbjct: 6 AKLAELRALRAAGKKRLSTYEVEEQGDIYEEVDDDGYKKIIRNRLDEDDFVVDDNGEGYA 65
Query: 161 EDGREIFDD 169
+DGRE++++
Sbjct: 66 DDGREVWNE 74
>UNIPROTKB|O48653 [details] [associations]
symbol:LOC_Os01g64820 "DNA polymerase alpha catalytic
subunit" species:39947 "Oryza sativa Japonica Group" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS;IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=IDA] [GO:0006270 "DNA replication initiation"
evidence=IEP] [GO:0006273 "lagging strand elongation" evidence=IEP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 OMA:CASIQGT EMBL:AB004461 EMBL:AP003286
STRING:O48653 Gramene:O48653 Uniprot:O48653
Length = 1534
Score = 766 (274.7 bits), Expect = 2.3e-107, Sum P(4) = 2.3e-107
Identities = 176/423 (41%), Positives = 249/423 (58%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++ +++ + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLHAFH
Sbjct: 789 LLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAFH 848
Query: 462 EKSYVLPDK-----QYXXXXXXXXXXXXXXX-----------------XXXRKKAAYSGG 499
+ +++PDK ++ +K +Y+GG
Sbjct: 849 ARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQGKTKKGPSYAGG 908
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVD 559
LVLEPKKG YDK+++L+DFNSLYPSIIQEYNICFTT+ D ++ L P +
Sbjct: 909 LVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVD--RSADGNVPNL----PASKT- 961
Query: 560 TGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRF 619
TG+LP +K LVE RR VK+ +K S Q+DI+Q+ALKLTANSMYGCLGF NSRF
Sbjct: 962 TGVLPELLKSLVERRRMVKSWLK--TASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRF 1019
Query: 620 FAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIK 678
+A+PLA L+T +GREIL NT LV+N LN EVIYGDTDS+MI ++D I ++
Sbjct: 1020 YAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGKVI 1079
Query: 679 SECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQ 738
E NK Y+ LE+D+DG+ +G + + E KG+D+VRRDWS
Sbjct: 1080 QEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDWSL 1137
Query: 739 LASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
L+ E G F ++QIL + S DD +++IH + +++ + G L ITK LTK
Sbjct: 1138 LSKEIGDFCLNQIL-----SGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSLTK 1192
Query: 799 APE 801
APE
Sbjct: 1193 APE 1195
Score = 209 (78.6 bits), Expect = 2.3e-107, Sum P(4) = 2.3e-107
Identities = 44/114 (38%), Positives = 66/114 (57%)
Query: 280 SEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGDTFS 338
SE + + + +F +++ YAF +P+ +Y L++ Y K PALP+DL G F
Sbjct: 442 SEIADKLSDFNVSNFAMTPVKRNYAFERTDLPNGEQYVLKINYPYKDPALPTDLRGQHFH 501
Query: 339 HVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQCNQMEKI 390
+ GT S LE LL++RKIKGPSWL + P+ R+SWCK+EV + + I
Sbjct: 502 ALLGTNNSALELLLIKRKIKGPSWLSISKFLACPATQRVSWCKFEVTVDSPKDI 555
Score = 116 (45.9 bits), Expect = 2.3e-107, Sum P(4) = 2.3e-107
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 215 FFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS 264
+ LDA+E+ + GTVYLFGKV V + HS CCV+V+N+ R IY +P S
Sbjct: 357 YILDAYEEPFGANSGTVYLFGKVEVGKR-FHS-CCVVVKNMQRCIYAIPSS 405
Score = 59 (25.8 bits), Expect = 2.3e-107, Sum P(4) = 2.3e-107
Identities = 15/66 (22%), Positives = 32/66 (48%)
Query: 104 AAFQKLKDLKGQGVKHK--YEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX--Y 159
AA ++L+ ++ G + + + +Y+ V+E++Y V +R++ Y
Sbjct: 27 AALERLRAIRDGGARAAAAVQVRIEAPIYDTVAEEDYAALVARRRKDAGAFIVDDDGLGY 86
Query: 160 VEDGRE 165
+DGRE
Sbjct: 87 ADDGRE 92
Score = 37 (18.1 bits), Expect = 2.5e-79, Sum P(3) = 2.5e-79
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 388 EKIRSKQGLIYLIGIVEFIKFTMLHSSYII 417
E + G +YL G VE K HS ++
Sbjct: 364 EPFGANSGTVYLFGKVEVGK--RFHSCCVV 391
>UNIPROTKB|Q0JHE4 [details] [associations]
symbol:Os01g0868300 "DNA polymerase" species:39947 "Oryza
sativa Japonica Group" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 EMBL:AP008207 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 KO:K02320 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0005658 TIGRFAMs:TIGR00592
RefSeq:NP_001044920.1 UniGene:Os.47313 STRING:Q0JHE4 GeneID:4325052
KEGG:osa:4325052 Gramene:Q0JHE4 ProtClustDB:CLSN2686901
Uniprot:Q0JHE4
Length = 1244
Score = 766 (274.7 bits), Expect = 1.6e-104, Sum P(3) = 1.6e-104
Identities = 176/423 (41%), Positives = 249/423 (58%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+++ +++ + +++M L+VLPL Q+TN+ GN+ +TL G R++R E+LLLHAFH
Sbjct: 499 LLKLVEYGETDACLALELMFHLSVLPLTRQLTNISGNLWGKTLQGSRAQRVEYLLLHAFH 558
Query: 462 EKSYVLPDK-----QYXXXXXXXXXXXXXXX-----------------XXXRKKAAYSGG 499
+ +++PDK ++ +K +Y+GG
Sbjct: 559 ARKFIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQGKTKKGPSYAGG 618
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVD 559
LVLEPKKG YDK+++L+DFNSLYPSIIQEYNICFTT+ D ++ L P +
Sbjct: 619 LVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVD--RSADGNVPNL----PASKT- 671
Query: 560 TGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRF 619
TG+LP +K LVE RR VK+ +K S Q+DI+Q+ALKLTANSMYGCLGF NSRF
Sbjct: 672 TGVLPELLKSLVERRRMVKSWLK--TASGLKRQQFDIQQQALKLTANSMYGCLGFSNSRF 729
Query: 620 FAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIK 678
+A+PLA L+T +GREIL NT LV+N LN EVIYGDTDS+MI ++D I ++
Sbjct: 730 YAKPLAELITLQGREILQNTVDLVQNNLNLEVIYGDTDSIMIHTGLDDISRAKGIAGKVI 789
Query: 679 SECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQ 738
E NK Y+ LE+D+DG+ +G + + E KG+D+VRRDWS
Sbjct: 790 QEVNKKYRCLEIDLDGIYKRMLLLKKKKYAAIKVAL--DGSLRENIERKGLDMVRRDWSL 847
Query: 739 LASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
L+ E G F ++QIL + S DD +++IH + +++ + G L ITK LTK
Sbjct: 848 LSKEIGDFCLNQIL-----SGGSCDDVIESIHSSLVQVQEQMRGGQTELEKYIITKSLTK 902
Query: 799 APE 801
APE
Sbjct: 903 APE 905
Score = 209 (78.6 bits), Expect = 1.6e-104, Sum P(3) = 1.6e-104
Identities = 44/114 (38%), Positives = 66/114 (57%)
Query: 280 SEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEY-LEVRYSAKCPALPSDLSGDTFS 338
SE + + + +F +++ YAF +P+ +Y L++ Y K PALP+DL G F
Sbjct: 152 SEIADKLSDFNVSNFAMTPVKRNYAFERTDLPNGEQYVLKINYPYKDPALPTDLRGQHFH 211
Query: 339 HVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWCKYEVQCNQMEKI 390
+ GT S LE LL++RKIKGPSWL + P+ R+SWCK+EV + + I
Sbjct: 212 ALLGTNNSALELLLIKRKIKGPSWLSISKFLACPATQRVSWCKFEVTVDSPKDI 265
Score = 116 (45.9 bits), Expect = 1.6e-104, Sum P(3) = 1.6e-104
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 215 FFLDAFEDIY-KQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS 264
+ LDA+E+ + GTVYLFGKV V + HS CCV+V+N+ R IY +P S
Sbjct: 67 YILDAYEEPFGANSGTVYLFGKVEVGKR-FHS-CCVVVKNMQRCIYAIPSS 115
Score = 37 (18.1 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 388 EKIRSKQGLIYLIGIVEFIKFTMLHSSYII 417
E + G +YL G VE K HS ++
Sbjct: 74 EPFGANSGTVYLFGKVEVGK--RFHSCCVV 101
>SGD|S000005046 [details] [associations]
symbol:POL1 "Catalytic subunit of the DNA polymerase I
alpha-primase complex" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IMP] [GO:0006270 "DNA replication
initiation" evidence=IC] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IDA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0000076
"DNA replication checkpoint" evidence=IBA] [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=IBA] [GO:0000734 "gene conversion
at mating-type locus, DNA repair synthesis" evidence=IBA]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=IBA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0006279 "premeiotic DNA
replication" evidence=IMP] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 SGD:S000005046 GO:GO:0005739
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 EMBL:BK006947
GO:GO:0051539 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0006278 EMBL:Z50161 GO:GO:0000084 GO:GO:0000076 PDB:3OIQ
PDBsum:3OIQ GO:GO:0006279 GO:GO:0003887 RefSeq:NP_014297.3
GeneID:855621 KEGG:sce:YNL102W KO:K02320 GO:GO:0006273
GO:GO:0006269 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 PDB:3FLO PDBsum:3FLO HOGENOM:HOG000163524
OrthoDB:EOG4K0TWK GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:J03268 EMBL:Z71378 EMBL:Z12126 PIR:S58250
RefSeq:NP_014303.3 ProteinModelPortal:P13382 SMR:P13382
DIP:DIP-2526N IntAct:P13382 MINT:MINT-421899 STRING:P13382
PaxDb:P13382 PeptideAtlas:P13382 PRIDE:P13382 EnsemblFungi:YNL102W
GeneID:855628 KEGG:sce:YNL096C CYGD:YNL102w
GeneTree:ENSGT00550000074891 KO:K02993 OMA:CASIQGT
EvolutionaryTrace:P13382 NextBio:979813 ArrayExpress:P13382
Genevestigator:P13382 GermOnline:YNL102W Uniprot:P13382
Length = 1468
Score = 711 (255.3 bits), Expect = 6.8e-94, Sum P(3) = 6.8e-94
Identities = 156/392 (39%), Positives = 228/392 (58%)
Query: 418 KIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXX 477
++ + +L L Q+TN+ GN ++TL G R+ RNE++LLH F +++PDK+
Sbjct: 763 EVSYRIQLLTLTKQLTNLAGNAWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRA 822
Query: 478 XXXXXXXXXXXX--XRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
KKA Y GGLV EP+KG + ++++MDFNSLYPSIIQE+NICFTT
Sbjct: 823 QKQRQNEENADAPVNSKKAKYQGGLVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTT 882
Query: 536 IPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYD 595
+ DI L +P +VD G+LP + LV+ RR+VK +MK +Q D
Sbjct: 883 VD---RNKEDIDELPS-VPPSEVDQGVLPRLLANLVDRRREVKKVMKTET-DPHKRVQCD 937
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDT 655
IRQ+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL+NT+ L E++N V+YGDT
Sbjct: 938 IRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMNLLVVYGDT 997
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXX 715
DS+MI ++Y KIG K N+ Y+ LE+DID V
Sbjct: 998 DSVMIDTGCDNYADAIKIGLGFKRLVNERYRLLEIDIDNVFKKLLLHAKKKYAALTVNLD 1057
Query: 716 XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKK 775
NG E+KG+D+ RR++ L+ + V++ IL +D ++ LQ ++++++
Sbjct: 1058 KNGNGTTVLEVKGLDMKRREFCPLSRDVSIHVLNTIL-----SDKDPEEALQEVYDYLED 1112
Query: 776 IRTDLDNGFVPLTLLEITKQLTKAPE---GGK 804
IR ++ + + +I +L+K P+ GGK
Sbjct: 1113 IRIKVETNNIRIDKYKINMKLSKDPKAYPGGK 1144
Score = 229 (85.7 bits), Expect = 6.8e-94, Sum P(3) = 6.8e-94
Identities = 65/202 (32%), Positives = 107/202 (52%)
Query: 196 KDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNID 255
K+D + TD F+MF+LD E T+ LFGKV +K++N S+ V + +
Sbjct: 341 KEDVVDPETD-----TFQMFWLDYCE----VNNTLILFGKVKLKDDNCVSAM-VQINGLC 390
Query: 256 RKIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSE 315
R+++ LPR + K P I + + +Y + + +++ + KY+F LP +P S+
Sbjct: 391 RELFFLPR----EGKTPTDIHEEIIPL--LMDKYGLDNIRAKPQKMKYSFELPDIPSESD 444
Query: 316 YLEVRYSAKCP-----ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEK 370
YL+V + P +PSDLS DTF HVFG ++ E+ +++ +I GP WL+ A+
Sbjct: 445 YLKVLLPYQTPKSSRDTIPSDLSSDTFYHVFGGNSNIFESFVIQNRIMGPCWLDIKGAD- 503
Query: 371 FPS--RISWCKYEVQCNQMEKI 390
F S S C EV ++ + I
Sbjct: 504 FNSIRNASHCAVEVSVDKPQNI 525
Score = 61 (26.5 bits), Expect = 6.8e-94, Sum P(3) = 6.8e-94
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFT-AD-ENVYEEVSEKEYTERVLKRQE 147
K+ K +KL+ + YE +D + +Y+E+ EKEY R KRQE
Sbjct: 4 KSEKLEKLRKLQAARNGTSIDDYEGDESDGDRIYDEIDEKEYRAR--KRQE 52
Score = 43 (20.2 bits), Expect = 5.3e-92, Sum P(3) = 5.3e-92
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 77 RGAEFDWKYIQNS 89
RG E DW+ + NS
Sbjct: 70 RGVEEDWREVDNS 82
>UNIPROTKB|Q755Y6 [details] [associations]
symbol:AER381C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000734 "gene conversion at mating-type
locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 EMBL:AE016818
GenomeReviews:AE016818_GR GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
RefSeq:NP_985237.1 ProteinModelPortal:Q755Y6 STRING:Q755Y6
EnsemblFungi:AAS53061 GeneID:4621453 KEGG:ago:AGOS_AER381C
PhylomeDB:Q755Y6 Uniprot:Q755Y6
Length = 1435
Score = 717 (257.5 bits), Expect = 4.4e-91, Sum P(2) = 4.4e-91
Identities = 160/408 (39%), Positives = 231/408 (56%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+V ++ + +SS+ +I + +L L Q+TN+ GN TL G R+ RNEF+LLH F+
Sbjct: 716 LVLALREAITNSSFSAEIAFRIQILSLTKQLTNLAGNSWGHTLGGTRAGRNEFILLHEFY 775
Query: 462 EKSYVLPDKQYXXXXXXXXXXX--------XXXXXXXRKKAAYSGGLVLEPKKGFYDKFI 513
+Y+LPDK+ KKA Y GGLV +P KG + +I
Sbjct: 776 RNNYILPDKESRQMRSARQQQNVDTPDGDVATDSRNSNKKAKYQGGLVFDPDKGLHKNYI 835
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
++MDFNSLYPSIIQE+NICFTT+ DI L + +P + G+LP + LVE
Sbjct: 836 LVMDFNSLYPSIIQEFNICFTTVE---RNPHDIDELPQ-VPT-EAKPGVLPRLLANLVER 890
Query: 574 RRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGR 633
RR+VK LM + + DIRQ+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGR
Sbjct: 891 RREVKKLMNAET-DAHKKAECDIRQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGR 949
Query: 634 EILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDID 693
EIL+NT+ L E+L V+YGDTDS+MI ++Y IG K N+ Y+ LE+DID
Sbjct: 950 EILMNTRQLAESLGLAVVYGDTDSVMIDTGCDNYREALSIGENFKKLVNERYRLLEIDID 1009
Query: 694 GVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
V G I S E+KG+D+ RR++ L+ E V++ IL
Sbjct: 1010 NVFKKLLLHAKKKYAALNVSFDKAGNEITSLEVKGLDMRRREYCPLSKEVSTQVLNTILS 1069
Query: 754 EQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+Q + L+N++++M+ I++ ++N + +I +L+K P+
Sbjct: 1070 DQDS-----ESALENVYDYMETIKSKIENNEIRADKFKINTRLSKDPK 1112
Score = 232 (86.7 bits), Expect = 4.4e-91, Sum P(2) = 4.4e-91
Identities = 65/187 (34%), Positives = 96/187 (51%)
Query: 189 NIQNPNAKDDSLPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCC 248
N N +K+D + ATD F MF+LD E ++ LFGK+ N H S
Sbjct: 302 NFNNKYSKEDIVDQATDS-----FSMFWLDYTE----LETSLLLFGKIKTL-NGKHISAM 351
Query: 249 VIVQNIDRKIYLLPRSEHLKTKEPVSIAQVYSEF-DQIATQYKILDFKSRKIEKKYAFNL 307
V V I R++Y LPR E + +V+ E + +Y + +++ +K YAF L
Sbjct: 352 VQVAGIYRELYFLPR-------EGKTALEVHEEIIPLLMDKYGLSTIRAKPEKKMYAFEL 404
Query: 308 PGVPDLSEYLEVR--YSA-KCP--ALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSW 362
+P +EYL+V Y KC +PSDL GDTF HVFG +S E+ +++R+I GP W
Sbjct: 405 ADIPKEAEYLKVLLPYETPKCKNVVIPSDLCGDTFCHVFGGNSSIFESFVIQRRILGPCW 464
Query: 363 LEFPEAE 369
L + +
Sbjct: 465 LSIKQGD 471
Score = 38 (18.4 bits), Expect = 9.3e-14, Sum P(2) = 9.3e-14
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 671 FKIGNQIKSECNKLYKQLELDID 693
+++G + C + YK LE++ +
Sbjct: 683 WELGEMYQVVCQREYKPLEINFN 705
>CGD|CAL0002431 [details] [associations]
symbol:POL1 species:5476 "Candida albicans" [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006279 "premeiotic DNA replication"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
CGD:CAL0002431 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 RefSeq:XP_722942.1 RefSeq:XP_723089.1
STRING:Q5ANM8 GeneID:3635144 GeneID:3635340 KEGG:cal:CaO19.13294
KEGG:cal:CaO19.5873 Uniprot:Q5ANM8
Length = 1470
Score = 735 (263.8 bits), Expect = 1.2e-90, Sum P(2) = 1.2e-90
Identities = 156/406 (38%), Positives = 230/406 (56%)
Query: 406 IKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSY 465
+K L+ +I +L L+ Q+TN+ GN S TL G R+ RNE++LLH F +Y
Sbjct: 741 LKENELNVKQTAEIAFATQILSLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFKRNNY 800
Query: 466 VLPDKQ--------YXXXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMD 517
++PDK+ Y KK Y GGLV EP+KG + ++++MD
Sbjct: 801 IVPDKEDKTHKNTSYQQEARVENAEEDATTATSNKKPKYQGGLVFEPEKGLHKNYVLVMD 860
Query: 518 FNSLYPSIIQEYNICFTTIPV-RMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQ 576
FNSLYPSIIQE+NICFTT+ R D LPE ++G+LP + LV RR+
Sbjct: 861 FNSLYPSIIQEFNICFTTVNRDRFNITHDENKDMPILPERDTESGVLPRLLNTLVSRRRE 920
Query: 577 VKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREIL 636
VK L+K P + QYDI+Q+ALKLTANSMYGCLG+ NSRF+A+PLA LVT KGREIL
Sbjct: 921 VKKLLKDPKNTPFQKAQYDIKQQALKLTANSMYGCLGYVNSRFYAKPLAMLVTNKGREIL 980
Query: 637 LNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVX 696
++T+ L E+ + V+YGDTDS+MI + Y KIG Q K + N+ Y+ LE+DID V
Sbjct: 981 MDTRQLAESSSLRVVYGDTDSVMIDTGASSYQEAIKIGEQFKVQVNERYRLLEIDIDNVF 1040
Query: 697 XXXXXXXXXXXXXXXXXXX-XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQ 755
+ + E+KG+D+ RR++ QL+ + FV+++IL
Sbjct: 1041 KRLLLHAKKKYAAMNASINKATNEETATLEVKGLDMRRREYCQLSKDISTFVLTKIL--- 1097
Query: 756 SYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
+D + L +++++ ++ + N +P+ +I +L+K P+
Sbjct: 1098 --SDSDPETALLEVYDYLDDMKGKIQNNEIPIDKYKINTKLSKDPK 1141
Score = 210 (79.0 bits), Expect = 1.2e-90, Sum P(2) = 1.2e-90
Identities = 60/192 (31%), Positives = 95/192 (49%)
Query: 212 FRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRS------E 265
F+MF+ D E ++ LFGK+ KE S V V I R+++ LPR E
Sbjct: 329 FKMFWFDYAE----AENSLLLFGKIMTKEGKLVSGV-VKVDGICRELFFLPREYRIVDDE 383
Query: 266 HLKTKEPVSIAQVYSEFDQIA-TQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEV----R 320
K+K+ +I V E + Y + + +++ KKYAF L +P +EYL+V
Sbjct: 384 EDKSKKLTAI-DVLEEIQPLLLANYNLEELRAKPEVKKYAFELADIPKEAEYLKVLLPFN 442
Query: 321 YSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPS--RISWC 378
+P+++ G TF HVFGT + E+ +++R I GP WLE + F + S C
Sbjct: 443 NETNRNIMPANIEGSTFRHVFGTNANMFESFIMQRNIMGPCWLEIRGGD-FDAMQNASHC 501
Query: 379 KYEVQCNQMEKI 390
+ EV ++ +I
Sbjct: 502 QVEVVVDRPSQI 513
Score = 42 (19.8 bits), Expect = 6.3e-73, Sum P(2) = 6.3e-73
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 73 WVGARGAEFDWKYIQNSLDSNI-CLIDKTNKFAAFQK 108
W+ RG +FD +QN+ + ++D+ ++ + K
Sbjct: 484 WLEIRGGDFD--AMQNASHCQVEVVVDRPSQISTIDK 518
>DICTYBASE|DDB_G0282191 [details] [associations]
symbol:polA1 "DNA polymerase alpha catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA;IBA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0003896 "DNA
primase activity" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISS;IBA] [GO:0000731 "DNA synthesis involved in
DNA repair" evidence=ISS] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0005634 "nucleus"
evidence=IEA;IBA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0282191 GO:GO:0000166
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AAFI02000046
GO:GO:0008408 GO:GO:0006303 GO:GO:0000731 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 OMA:CASIQGT RefSeq:XP_640277.1
ProteinModelPortal:Q54SV8 STRING:Q54SV8 EnsemblProtists:DDB0232274
GeneID:8623451 KEGG:ddi:DDB_G0282191 Uniprot:Q54SV8
Length = 1509
Score = 709 (254.6 bits), Expect = 1.7e-87, Sum P(3) = 1.7e-87
Identities = 162/392 (41%), Positives = 230/392 (58%)
Query: 415 YIIKIMC-ELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYX 473
YII ++ +L V PL Q+TN+ GN ++L R+ER E+LLLH FHEK Y+LPDK Y
Sbjct: 810 YIIFLLIFKLLVFPLTKQLTNLAGNQWDKSLKSNRAERIEYLLLHNFHEKKYLLPDKIYQ 869
Query: 474 XXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICF 533
AAYSGGLVL+PK FYD++++L+DFNSLYPSIIQEYN+CF
Sbjct: 870 KSSSSGGGGGAKDKD---NHAAYSGGLVLDPKIDFYDRYVVLLDFNSLYPSIIQEYNVCF 926
Query: 534 TTIPVRMLQDSDITTLCEYLPE-HQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLM 592
TTI R+ +D E +P ++ GILP + LV RR++K M+Q + +
Sbjct: 927 TTIN-RVKRDDGKWE--EAMPPPSSIEKGILPKVLHGLVSKRREIKKRMEQEK-NKIIKA 982
Query: 593 QYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIY 652
QYDI+Q+A+KL ANSMYGCLGF +SRF+A PLA LVT KGRE L S+V + Y+VIY
Sbjct: 983 QYDIQQQAVKLIANSMYGCLGFSHSRFYALPLAELVTRKGRENLQKGASIVNKMCYDVIY 1042
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ--LELDIDGVXXXXXXXXXXXXXXX 710
GDTDSLMI V ++ IG +I+ + N Y+ +E+ +DG+
Sbjct: 1043 GDTDSLMIYTGVGTFNEAETIGKEIQKKINDQYRGSVMEIGLDGIFKRLLLFKKKKYACL 1102
Query: 711 XXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILD-EQSYTDYSLDDRLQNI 769
+ C +E KG+D+VRRD+ L + G++V++ IL E+ +SL I
Sbjct: 1103 KEFRIDSTTTKCERENKGIDIVRRDYCDLTKDIGQWVLNLILGGEEKIALFSL------I 1156
Query: 770 HEHMKKIRTDLDNGFVPLTLLEITKQLTKAPE 801
E+++ ++ + + + + ITK L+K PE
Sbjct: 1157 KEYLESVQQQIKDNTLAVEKFIITKTLSKQPE 1188
Score = 189 (71.6 bits), Expect = 1.7e-87, Sum P(3) = 1.7e-87
Identities = 45/160 (28%), Positives = 83/160 (51%)
Query: 244 HSSCCVIVQNIDRKIYLLPRSEHL-----KTKEPVSIAQVYSEFDQIATQYKILDFKSRK 298
++SCC+I++ ++R ++ LPR L T V+ + +E Q+ + KI D+K +K
Sbjct: 435 YASCCIIIEKMERNVFFLPRDYKLDQDGESTTIQVTDTMIEAELKQLVDRSKIKDYKLKK 494
Query: 299 IEKKYAFN--LP---GVPDLSEYL-EVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLL 352
+++ AF+ +P G Y+ ++ Y + P+D+ G TF +G +S +E L
Sbjct: 495 VKRTSAFDYSVPHKNGPVGEQHYVWKLSYPSNQMVFPNDIKGSTFRCAYGITSSPVELFL 554
Query: 353 LERKIKGPSWLEFPEAE-KFPSRISWCKYEVQCNQMEKIR 391
++RKI GP+WL F + S+ +YE + I+
Sbjct: 555 IKRKIMGPTWLTVSGITLNFDQKKSFARYEATVKSFKSIK 594
Score = 43 (20.2 bits), Expect = 1.7e-87, Sum P(3) = 1.7e-87
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSH 244
F L ED KQ G + LFGKV ++ + S+
Sbjct: 383 FLLTTEED--KQ-GRIILFGKVKLQASKSN 409
>UNIPROTKB|K7GS14 [details] [associations]
symbol:LOC100627036 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR012337 Pfam:PF03104 SUPFAM:SSF53098 InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
EMBL:CU207412 EMBL:FP339588 Ensembl:ENSSSCT00000034075
Uniprot:K7GS14
Length = 562
Score = 536 (193.7 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 107/198 (54%), Positives = 138/198 (69%)
Query: 193 PNAKDDS--LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVI 250
P + DS LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+
Sbjct: 326 PEVQVDSSHLPLVKGADGEQVFQFYWLDAYEDQYSQPGVVFLFGKVWIELAETHVSCCVM 385
Query: 251 VQNIDRKIYLLPRSEH--LKT-KE---PVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKY 303
V+NI+R +Y LPR L T KE PV++ VY EFD+ IA +YKI+ FKS+ +EK Y
Sbjct: 386 VKNIERTLYFLPRETKIDLNTGKEKGTPVTMKDVYDEFDEKIAAKYKIMKFKSKPVEKNY 445
Query: 304 AFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWL 363
AF +P VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WL
Sbjct: 446 AFEIPDVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWL 505
Query: 364 EFPEAEKFPSRISWCKYE 381
E + ISWCK+E
Sbjct: 506 EVKNPQLLNQPISWCKFE 523
Score = 151 (58.2 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 34/75 (45%), Positives = 44/75 (58%)
Query: 99 KTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXX 158
K + A ++LK K G K+KYE +VYEEV E +Y++ V RQ+
Sbjct: 34 KKGRQEALERLKRAKA-GEKYKYEVEDFTSVYEEVDEDQYSKLVQARQDDDWIVDDDGIG 92
Query: 159 YVEDGREIFDDDIED 173
YVEDGREIFDDD+ED
Sbjct: 93 YVEDGREIFDDDLED 107
>UNIPROTKB|Q23AJ0 [details] [associations]
symbol:TTHERM_00424700 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 EMBL:GG662724 RefSeq:XP_001013747.2
UniGene:Tth.5627 ProteinModelPortal:Q23AJ0 EnsemblProtists:EAR93502
GeneID:7845641 KEGG:tet:TTHERM_00424700 ProtClustDB:CLSZ2848284
Uniprot:Q23AJ0
Length = 1396
Score = 448 (162.8 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 107/264 (40%), Positives = 152/264 (57%)
Query: 542 QDSDITTLCEYLPEHQVDTGI--LPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQK 599
++ I + LP +V GI LPS ++ LVE R+ VK +K ++ DI+QK
Sbjct: 878 ENEQIVQTHDVLPTIEVIKGIAPLPSILQYLVEQRKVVKNQIKGQK-DPQVIETLDIKQK 936
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM 659
A KL ANSMYGCLGF +SRF+A PLA+ +TAKGR IL ++K +VE++ Y VIYGDTDSLM
Sbjct: 937 AFKLVANSMYGCLGFSSSRFYAMPLASFITAKGRHILFDSKKIVEDMGYSVIYGDTDSLM 996
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXX----- 714
I N++ K G IK + N YK+L+LDIDGV
Sbjct: 997 IKPGTNEFLEAVKTGLSIKIKVNSKYKKLQLDIDGVFKNMLLLKKKKYATLKVANWEEVK 1056
Query: 715 XXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
N +EIKG+DVVRRDW QL+ +AG ++ IL+ +S ++ LDD I +++
Sbjct: 1057 NTNAPEKLEKEIKGIDVVRRDWCQLSRDAGNKILEIILESKS-SENMLDD----IKKYLI 1111
Query: 775 KIRTDLDNGFVPLTLLEITKQLTK 798
++ D++ + + ITK+LTK
Sbjct: 1112 QLNDDINQKNIKNSNYYITKRLTK 1135
Score = 273 (101.2 bits), Expect = 2.7e-62, Sum P(2) = 2.7e-62
Identities = 69/215 (32%), Positives = 105/215 (48%)
Query: 338 SHVFGTKTSFLENLLLERKIKGPSWLEFPE--AEKFPSRISWCKYEVQCNQMEKIRSKQG 395
S F TK + LL++ + ++ E E ++ K E+ + + K
Sbjct: 623 SSTFKTKMAMKGRLLVDTLLSSQEFVNCVEYTLEALAQKLF--KIEIPRIDAKAYQQKFA 680
Query: 396 LIYLIGIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFL 455
L+ + T Y ++IM L ++PL Q+T++CGN+ +L R+ERNE L
Sbjct: 681 TYKLLN--SLVDDTYQDIDYALRIMYHLQIVPLTKQLTSICGNIWMGSLQNQRAERNEML 738
Query: 456 LLHAFHEKSYVLPDK---------------QYXXXXXXXXXXXXXXXXXXRKKAAYSGGL 500
LLH F++ +YV PD Q +K+ Y GG
Sbjct: 739 LLHKFNQLNYVYPDNFKNLPESYKKKHKNAQIRKQYEEDEDQAQGNKNPKKKENKYKGGQ 798
Query: 501 VLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
V EP+KG Y+++I+L+DFNSLYPSIIQE+N+CFTT
Sbjct: 799 VFEPEKGLYNEYIVLLDFNSLYPSIIQEFNVCFTT 833
Score = 200 (75.5 bits), Expect = 1.3e-54, Sum P(2) = 1.3e-54
Identities = 51/169 (30%), Positives = 85/169 (50%)
Query: 215 FFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVS 274
+ D F D +P +Y F KV K+ N+ +C + + I R ++ P S+ + T++ +
Sbjct: 289 YLYDYFYDAQVKPDKIYAFAKVQNKQTNAFDTCVIQIDTIIRNLFFYPSSDTV-TEQQIK 347
Query: 275 --IAQVYSEFDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDL 332
IA++ + +Q T K ++F ++K YAF LP S + +V S + + D
Sbjct: 348 NEIAELLKK-EQ--TSRKNVEFLGAFVDKNYAFELPIPRGKSRWYQVVMSYEYEVISPDT 404
Query: 333 SGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYE 381
G FS+ G+ S LE L+ +KI GPSW+ F + S I+ K E
Sbjct: 405 KGQYFSYCVGSTYSALETFLITKKITGPSWVRFQNVKDTTSCITNRKLE 453
>UNIPROTKB|A8J9T2 [details] [associations]
symbol:POLA1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 Pfam:PF00136 Pfam:PF03104 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 EMBL:DS496147
RefSeq:XP_001698708.1 ProteinModelPortal:A8J9T2
EnsemblPlants:EDO99390 GeneID:5724235 KEGG:cre:CHLREDRAFT_177262
BioCyc:CHLAMY:CHLREDRAFT_177262-MONOMER Uniprot:A8J9T2
Length = 1114
Score = 293 (108.2 bits), Expect = 8.5e-54, Sum P(3) = 8.5e-54
Identities = 62/135 (45%), Positives = 82/135 (60%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAF 460
G++ ++ + + IM L+VLPL Q++ + G + SRTL G R+ R E LLLH F
Sbjct: 514 GVLRLLRHGESDAWLALGIMFHLSVLPLTKQLSALSGQLWSRTLAGQRAGRIEMLLLHEF 573
Query: 461 HEKSYVLPDKQYXXXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
H + +++PDKQ Y+GGLVLEPKKG YDK +I++DFNS
Sbjct: 574 HSRKFIVPDKQ----------SYKSKAAPSGNGPKYAGGLVLEPKKGLYDKIVIILDFNS 623
Query: 521 LYPSIIQEYNICFTT 535
LYPSIIQEYNICFTT
Sbjct: 624 LYPSIIQEYNICFTT 638
Score = 217 (81.4 bits), Expect = 8.5e-54, Sum P(3) = 8.5e-54
Identities = 83/296 (28%), Positives = 131/296 (44%)
Query: 105 AFQKLKDLKGQGVKHK--YEFTADENVYEEVSEKEYTERVLKRQEXXXXXXXXXXXYVED 162
A ++L+ + G+K YE + VY+ V E++Y E V KR++ D
Sbjct: 20 ALEQLRAARDGGLKRALAYEVKEEAAVYDVVDEQQYAEIVKKRRDAGDFVVDDDGAGYHD 79
Query: 163 GREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNAKDDSLPLATDHENKKVFRMFFLDAFED 222
E DD ++ P + +DD+ A K V + LDA+E+
Sbjct: 80 IGE--DDYFQERPVEDDG-----------GDDGEDDTKQ-AGKKRKKGVLPFYLLDAYEN 125
Query: 223 IYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIAQ---VY 279
+PG V LFGK+ E SC V V+ + R + ++PR E + + +A V
Sbjct: 126 PDARPGEVVLFGKIEA-EGGRWQSCAVAVRGLQRTLIVVPRREVFEDGDGAIVAMHAAVK 184
Query: 280 SEFDQIATQYKILDFKSRK----IE--KKYAFNLPGVPDLSEY-LEVRYSAKCPAL--PS 330
++ + K+L S +E K YAF VP ++ ++VRY P L P+
Sbjct: 185 ADPARKPELMKMLQMWSAAGGVFLEGIKFYAFENRDVPHGEQWVIKVRYPGHLPVLQPPA 244
Query: 331 D--LSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF--PEAEKFPSRISWCKYEV 382
SG T+ +FG S LER+IKGP W+ P ++ ++ +WCK EV
Sbjct: 245 SGCFSGKTYCAIFGANQS-----TLERRIKGPGWMGICSPTRVEYGNQTTWCKVEV 295
Score = 185 (70.2 bits), Expect = 8.5e-54, Sum P(3) = 8.5e-54
Identities = 41/129 (31%), Positives = 66/129 (51%)
Query: 673 IGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVV 732
+G +IK E NK YK LE+++DGV G++ E KG+D+V
Sbjct: 686 LGARIKREVNKRYKLLEIELDGVFKSILLLKKKKYAAVKLEPDGQGRLAEVMEQKGLDIV 745
Query: 733 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEI 792
RRDW L+ + G F ++ +L + ++ + IH H++++ + G +P+ I
Sbjct: 746 RRDWCPLSKDVGNFALAAVLSGRGR-----EEVVGEIHAHLRQVAERVRAGQIPMGKFII 800
Query: 793 TKQLTKAPE 801
TKQLTK PE
Sbjct: 801 TKQLTKRPE 809
Score = 166 (63.5 bits), Expect = 8.3e-52, Sum P(3) = 8.3e-52
Identities = 45/111 (40%), Positives = 63/111 (56%)
Query: 585 NLSSDLLMQYDIR-QKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLV 643
+L ++ +Y+I A+KLTANSMYGCLGF SRF+AQPLA L+TA+GR IL +T L
Sbjct: 623 SLYPSIIQEYNICFTTAIKLTANSMYGCLGFGASRFYAQPLAELITAQGRSILSSTVDLE 682
Query: 644 ENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDG 694
I + + + + D VFK +K K Y ++L+ DG
Sbjct: 683 ARALGARIKREVNKRYKLLEI-ELDGVFKSILLLKK---KKYAAVKLEPDG 729
>UNIPROTKB|I3LGG7 [details] [associations]
symbol:LOC100627036 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR012337 Pfam:PF03104 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:CU207412 EMBL:FP339588
Ensembl:ENSSSCT00000027046 Uniprot:I3LGG7
Length = 313
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 107/198 (54%), Positives = 138/198 (69%)
Query: 193 PNAKDDS--LPLATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVI 250
P + DS LPL + ++VF+ ++LDA+ED Y QPG V+LFGKV+++ +H SCCV+
Sbjct: 74 PEVQVDSSHLPLVKGADGEQVFQFYWLDAYEDQYSQPGVVFLFGKVWIELAETHVSCCVM 133
Query: 251 VQNIDRKIYLLPRSEH--LKT-KE---PVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKY 303
V+NI+R +Y LPR L T KE PV++ VY EFD+ IA +YKI+ FKS+ +EK Y
Sbjct: 134 VKNIERTLYFLPRETKIDLNTGKEKGTPVTMKDVYDEFDEKIAAKYKIMKFKSKPVEKNY 193
Query: 304 AFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWL 363
AF +P VP+ SEYLEVRYSA+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WL
Sbjct: 194 AFEIPDVPEKSEYLEVRYSAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWL 253
Query: 364 EFPEAEKFPSRISWCKYE 381
E + ISWCK+E
Sbjct: 254 EVKNPQLLNQPISWCKFE 271
>UNIPROTKB|Q7RBM5 [details] [associations]
symbol:PY06115 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 TIGRFAMs:TIGR00592 EMBL:AABL01002033
RefSeq:XP_726706.1 ProteinModelPortal:Q7RBM5 STRING:Q7RBM5
GeneID:3792046 KEGG:pyo:PY06115 EuPathDB:PlasmoDB:PY06115
Uniprot:Q7RBM5
Length = 906
Score = 300 (110.7 bits), Expect = 3.3e-41, Sum P(2) = 3.3e-41
Identities = 76/224 (33%), Positives = 127/224 (56%)
Query: 542 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALM-KQPNLSS-DLLMQYDIRQK 599
Q DI+ + +Y + + GILPS +K+LVE R +K L+ + N +LL+ ++
Sbjct: 197 QVGDISNI-DYFDKTK--PGILPSILKQLVEKRAFIKKLIASEKNKEKKELLL---VQSL 250
Query: 600 ALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSL 658
++KL +NS+YGCLG ++RF+A+ +A+ +T KGR +L +TK VE N +V+YGDTDS+
Sbjct: 251 SIKLISNSIYGCLGNTHNRFYAKYIASYITQKGRNLLQHTKFKVEKEFNLKVVYGDTDSI 310
Query: 659 MI-----SCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXX 713
MI S +VN+Y K+ + IK+ NK YK+LELD++ +
Sbjct: 311 MIDTGIKSSDVNNYKESLKLAHTIKNNINKNYKKLELDLECIFSKLLLLKKKKYACAKVI 370
Query: 714 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY 757
GK E+KG++ ++RD+ +++ G ++ I + Y
Sbjct: 371 DPNLGKY--EYEMKGINFIKRDFCKISKLIGNEMLRIIFSNKEY 412
Score = 224 (83.9 bits), Expect = 3.3e-41, Sum P(2) = 3.3e-41
Identities = 54/159 (33%), Positives = 84/159 (52%)
Query: 382 VQCNQMEKIRSKQGLIYLIGIVEFIKFTMLHSSYIIKIMCE-LNVLPLAIQITNVCGNVL 440
+ CN + S+Q L + +I + + S Y I +C L ++ + +T + G +
Sbjct: 10 INCNNIHLFDSEQILENHLNT--YIN-SQIFSIYEIYNVCNVLQLVEKSRDLTKLSGYIW 66
Query: 441 SRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYXXXXXXXXXXXXXXXXXXRKKAAYSGGL 500
+R+L+ SE E+ LLH +H+K Y+ P + A Y GGL
Sbjct: 67 ARSLLSYTSECVEYFLLHEYHKKKYITP------LVAKKKPKIENDSNKSKNTAKYLGGL 120
Query: 501 VLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR 539
VLEP G+YD +++ +DFNSLYPSII EYNICF+T ++
Sbjct: 121 VLEPLCGYYDTYVLYLDFNSLYPSIIIEYNICFSTFNMK 159
Score = 126 (49.4 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
Identities = 43/159 (27%), Positives = 75/159 (47%)
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXX 715
D+ + S +VN+Y K+ + IK+ NK YK+LELD++ +
Sbjct: 313 DTGIKSSDVNNYKESLKLAHTIKNNINKNYKKLELDLECIFSKLLLLKKKKYACAKVIDP 372
Query: 716 XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSY-------TDYSL---DD- 764
GK E+KG++ ++RD+ +++ G ++ I + Y ++ SL DD
Sbjct: 373 NLGKY--EYEMKGINFIKRDFCKISKLIGNEMLRIIFSNKEYKPSQPNSSNTSLSHTDDL 430
Query: 765 RLQN-----IHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+QN IHE+++ + + N L ITK+LTK
Sbjct: 431 SIQNDLSEQIHEYLRSVYQRIQNDEFDLEHYVITKKLTK 469
>UNIPROTKB|Q8TSB3 [details] [associations]
symbol:MA_0885 "DNA polymerase" species:188937
"Methanosarcina acetivorans C2A" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 EMBL:AE010299
GenomeReviews:AE010299_GR eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 OMA:RSFRPYF HSSP:Q56366
KO:K02319 RefSeq:NP_615844.1 ProteinModelPortal:Q8TSB3
GeneID:1472777 KEGG:mac:MA0885 ProtClustDB:CLSK568782
BioCyc:MACE188937:GI2O-954-MONOMER Uniprot:Q8TSB3
Length = 937
Score = 272 (100.8 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 75/260 (28%), Positives = 131/260 (50%)
Query: 404 EFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEK 463
+F+ + S ++++ EL +L I + V G++L + GG++ E LLL F K
Sbjct: 379 KFVDYARRDSELALELVLELRLLDKYIALAQVSGSLLQEIVDGGQTSMVETLLLREFGLK 438
Query: 464 SYVLPDKQYXXXXXXXXXXXXXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYP 523
V+ K + GG VLEPKKG + +IL D+ SLYP
Sbjct: 439 DRVILPKP----------GDELSAERYDMSSDLKGGEVLEPKKGLLENVLIL-DYKSLYP 487
Query: 524 SIIQEYNICFTTIPVRMLQDSDIT---TLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
+I+ +N+C+TT+ R D + E++P +V GI+PS ++ L+ R K
Sbjct: 488 TIMMAHNLCYTTVVTRDRPDGKTIKPPSGGEFVPP-EVFRGIVPSILEDLLNKRGDTKKR 546
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MK+ + ++ + D Q A+K+ NS YG G+ +R ++ LA VT+ GR +LNT+
Sbjct: 547 MKRTSDENEHRV-LDATQLAIKILLNSFYGYSGYARARLYSLTLANAVTSFGRSNILNTR 605
Query: 641 SLVENLNYEVIYGDTDSLMI 660
L+ +++ ++ +L++
Sbjct: 606 DLINGRIGKIVLRNSAALLL 625
Score = 100 (40.3 bits), Expect = 4.4e-25, Sum P(2) = 4.4e-25
Identities = 36/159 (22%), Positives = 68/159 (42%)
Query: 650 VIYGDTDSLMISCNVN---DYDSVFKIGNQIKSECN-KLYKQLELDIDGVXXXXXXXXXX 705
V YGDTDS+ + C + V +GN++ + L +EL+ + V
Sbjct: 642 VAYGDTDSVFVHCKAKGDLSLEEVSLVGNRLSEIVSASLPDPMELEFESVAKRALLIAKK 701
Query: 706 XXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDR 765
+G ++KG++ VRRDW +L S V+ +L E D +++
Sbjct: 702 RYALWLFEPRNSG-WENKIKVKGMETVRRDWCELTSITLNRVLEFVLIEGD-VDKAVE-H 758
Query: 766 LQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++ + ++ + D G + +L T+ LT+ + K
Sbjct: 759 VRKVVSDVRNLDPGKDAGIIEKLVL--TRTLTRKADSYK 795
>UNIPROTKB|Q22HL1 [details] [associations]
symbol:TTHERM_00636920 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0007346
GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
ProtClustDB:PTZ00166 EMBL:GG662588 RefSeq:XP_001032353.1
EnsemblProtists:EAR84690 GeneID:7846549 KEGG:tet:TTHERM_00636920
Uniprot:Q22HL1
Length = 1124
Score = 312 (114.9 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 101/321 (31%), Positives = 156/321 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLC-- 550
+ G VL+PKKGFYDK I +DF SLYPSI+ +N+C++T+ V M + D TL
Sbjct: 575 FEGAFVLQPKKGFYDKPIATLDFASLYPSIMMAHNLCYSTLISKNVAMSMNKDDYTLTPH 634
Query: 551 -EYLPEHQVDTGILPSEIKKLVESRRQVK-ALMKQPNLSSDLLMQYDIRQKALKLTANSM 608
+Y + V GILP +K L+ +R++ K L K+ + ++ D RQ ALK++ANS+
Sbjct: 635 GDYFAKPHVRQGILPDILKDLLAARKKAKNELAKETDPLRKAVL--DGRQLALKISANSV 692
Query: 609 YGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-------LNYE--VIYGDTDSLM 659
YG G + +++ VT+ GR+++ T+ V N NY+ VIYGDTDS+M
Sbjct: 693 YGFTGAQVGQLPCLEISSSVTSFGRQMIEATRDFVLNHYNKANGYNYDSDVIYGDTDSVM 752
Query: 660 ISCNVNDYDSVFKIGNQIKSECNK-LY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXN 717
+ + + K G + +K L+ ++L+ + V
Sbjct: 753 VKFGCDSIEEAMKYGKEAAEMISKKLFINPIKLEFEKVYYPYLLISKKRYAGCFYTKPDK 812
Query: 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 777
I + KG++ VRRD Q E + IL E D +Q + +K
Sbjct: 813 YDKI---DTKGMENVRRDNCQFIREMMNTCLRYILVEHK------QDGVQRSIQFIKGCI 863
Query: 778 TDLDNGFVPLTLLEITKQLTK 798
+DL V ++ L ITK LTK
Sbjct: 864 SDLYQNKVDISKLVITKSLTK 884
Score = 62 (26.9 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 28/101 (27%), Positives = 44/101 (43%)
Query: 289 YKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSHV-FGTKTSF 347
YK D+ K Y F P +P L +E Y+ + G F V F + F
Sbjct: 188 YKGKDYAQDTYLKIYTFIPPFIPALRGMIEKGYT---------IDGIRFPAVTFESNIPF 238
Query: 348 LENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQME 388
+++ I G W++ + EKF R S K++ +C Q+E
Sbjct: 239 ALRYMIDADIVGMGWIKL-DKEKFKIR-SLDKHKSRC-QIE 276
Score = 39 (18.8 bits), Expect = 1.4e-24, Sum P(3) = 1.4e-24
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 161 ED-GREIFDDDIEDV 174
ED G E+ +DD +DV
Sbjct: 13 EDFGDELIEDDFDDV 27
>UNIPROTKB|Q9LRE6 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:39947 "Oryza sativa Japonica Group" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0051539
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 EMBL:AB037899
EMBL:AC128644 EMBL:AC134047 RefSeq:NP_001067405.1 UniGene:Os.3738
ProteinModelPortal:Q9LRE6 STRING:Q9LRE6 PRIDE:Q9LRE6
EnsemblPlants:LOC_Os11g08330.1 GeneID:4349968
KEGG:dosa:Os11t0186400-00 KEGG:osa:4349968 Gramene:Q9LRE6
ProtClustDB:CLSN2698457 Uniprot:Q9LRE6
Length = 1105
Score = 313 (115.2 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 101/336 (30%), Positives = 166/336 (49%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IP---VRML----QDSDIT 547
+ G VLE + GFY+K I +DF SLYPSI+ YN+C+ T +P R L + + T
Sbjct: 587 FEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVPPEDARKLNLPPESVNKT 646
Query: 548 TLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANS 607
E + V GILP +++L+ +R++ KA +K+ + + D RQ ALK++ANS
Sbjct: 647 PSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAKDPFERAV-LDGRQLALKISANS 705
Query: 608 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIYGDTDSL 658
+YG G + +++ VT+ GR+++ +TK LVE+ N EVIYGDTDS+
Sbjct: 706 VYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSV 765
Query: 659 MISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVXXXXXXXXXXXXXXXXXXXXXN 717
M+ V+ + K+G + + + K ++L+ + + N
Sbjct: 766 MVQFGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAGLYWT---N 822
Query: 718 GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIR 777
+ + KG++ VRRD L K ++++ L + D + +Q ++K
Sbjct: 823 PEKFDKMDTKGIETVRRDNCLLV----KNLVTECL-HKILVDRDVPGAVQ----YVKNTI 873
Query: 778 TDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLS 813
+DL V L+LL ITK LTK E V + L+
Sbjct: 874 SDLLMNRVDLSLLVITKGLTKTGEDYAVKAAHVELA 909
Score = 56 (24.8 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 347 FLENLLLERKIKGPSWLEFPEAEKF--PSRI-SWCKYEVQC 384
F +++ I G +W+E P A K+ +RI S+C+ E+ C
Sbjct: 255 FALRFMIDCNIVGGNWIEVP-AGKYMKAARIMSYCQLELDC 294
Score = 39 (18.8 bits), Expect = 4.0e-24, Sum P(3) = 4.0e-24
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 312 DLSEYLEVRYSA-KCPALPSDLS 333
D E L R S + PALP+DL+
Sbjct: 74 DRDEALASRLSRWRRPALPADLA 96
>ZFIN|ZDB-GENE-040718-187 [details] [associations]
symbol:tmem147 "transmembrane protein 147"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0016020 "membrane" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] ZFIN:ZDB-GENE-040718-187 GO:GO:0016021
CTD:10430 eggNOG:NOG241002 HOGENOM:HOG000005667 HOVERGEN:HBG094059
OrthoDB:EOG46144T InterPro:IPR019164 PANTHER:PTHR12869 Pfam:PF09767
EMBL:BC076325 IPI:IPI00502131 RefSeq:NP_001002484.1
UniGene:Dr.79660 STRING:Q6DGL7 GeneID:436757 KEGG:dre:436757
InParanoid:Q6DGL7 NextBio:20831194 Uniprot:Q6DGL7
Length = 225
Score = 275 (101.9 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 52/97 (53%), Positives = 69/97 (71%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWA 60
ML LATF PT + +G D G+ +K ++D+ D +G +LV+S GKG KI+ A +GWA
Sbjct: 50 MLFLATFFPTWEGGAGVYDFVGEFMKATVDMADLLGLHLVMSRNAGKGEYKIMVAAMGWA 109
Query: 61 GAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
AE+I++R + LWVGARG EFDWKYIQ S DSNI L+
Sbjct: 110 TAELIMSRCIPLWVGARGIEFDWKYIQMSFDSNISLV 146
>UNIPROTKB|Q3SZR6 [details] [associations]
symbol:TMEM147 "Transmembrane protein 147" species:9913
"Bos taurus" [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
GO:GO:0016021 GO:GO:0005789 EMBL:BC102737 IPI:IPI00700809
RefSeq:NP_001029796.1 UniGene:Bt.4533 STRING:Q3SZR6
Ensembl:ENSBTAT00000021170 GeneID:535038 KEGG:bta:535038 CTD:10430
eggNOG:NOG241002 GeneTree:ENSGT00390000013276 HOGENOM:HOG000005667
HOVERGEN:HBG094059 InParanoid:Q3SZR6 OMA:GEFMKAT OrthoDB:EOG46144T
NextBio:20876605 InterPro:IPR019164 PANTHER:PTHR12869 Pfam:PF09767
Uniprot:Q3SZR6
Length = 224
Score = 272 (100.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 1 MLILATFVPTTDNFSGGV-DVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT + GG+ D G+ +K S+D+ D +G LV+S GKG KI+ A +GW
Sbjct: 50 MLFLATFFPT---WEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGW 106
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
A AE+I++R + LWVGARG EFDWKYIQ S+DSNI L+
Sbjct: 107 ATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLV 144
>UNIPROTKB|Q9BVK8 [details] [associations]
symbol:TMEM147 "Transmembrane protein 147" species:9606
"Homo sapiens" [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0005789 "endoplasmic reticulum membrane" evidence=IEA]
GO:GO:0016021 GO:GO:0005789 CTD:10430 eggNOG:NOG241002
HOGENOM:HOG000005667 HOVERGEN:HBG094059 OMA:GEFMKAT
InterPro:IPR019164 PANTHER:PTHR12869 Pfam:PF09767 EMBL:Y18007
EMBL:BC001118 IPI:IPI00013293 RefSeq:NP_116024.1 UniGene:Hs.9234
ProteinModelPortal:Q9BVK8 IntAct:Q9BVK8 MINT:MINT-1036854
STRING:Q9BVK8 PhosphoSite:Q9BVK8 DMDM:74733336 PRIDE:Q9BVK8
DNASU:10430 Ensembl:ENST00000222284 GeneID:10430 KEGG:hsa:10430
UCSC:uc002oai.2 GeneCards:GC19P036037 HGNC:HGNC:30414 MIM:613585
neXtProt:NX_Q9BVK8 PharmGKB:PA144596255 InParanoid:Q9BVK8
PhylomeDB:Q9BVK8 GenomeRNAi:10430 NextBio:39532 ArrayExpress:Q9BVK8
Bgee:Q9BVK8 CleanEx:HS_TMEM147 Genevestigator:Q9BVK8 Uniprot:Q9BVK8
Length = 224
Score = 272 (100.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 1 MLILATFVPTTDNFSGGV-DVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT + GG+ D G+ +K S+D+ D +G LV+S GKG KI+ A +GW
Sbjct: 50 MLFLATFFPT---WEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGW 106
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
A AE+I++R + LWVGARG EFDWKYIQ S+DSNI L+
Sbjct: 107 ATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLV 144
>MGI|MGI:1915011 [details] [associations]
symbol:Tmem147 "transmembrane protein 147" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016020 "membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
MGI:MGI:1915011 GO:GO:0016021 GO:GO:0005789 CTD:10430
eggNOG:NOG241002 GeneTree:ENSGT00390000013276 HOGENOM:HOG000005667
HOVERGEN:HBG094059 OMA:GEFMKAT OrthoDB:EOG46144T InterPro:IPR019164
PANTHER:PTHR12869 Pfam:PF09767 EMBL:AK007753 EMBL:AK008089
EMBL:AK010168 EMBL:BC035323 IPI:IPI00318696 IPI:IPI00461948
RefSeq:NP_081491.2 UniGene:Mm.27499 ProteinModelPortal:Q9CQG6
STRING:Q9CQG6 PhosphoSite:Q9CQG6 PaxDb:Q9CQG6 PRIDE:Q9CQG6
Ensembl:ENSMUST00000006478 GeneID:69804 KEGG:mmu:69804
InParanoid:Q9CQG6 NextBio:330374 Bgee:Q9CQG6 CleanEx:MM_TMEM147
Genevestigator:Q9CQG6 Uniprot:Q9CQG6
Length = 224
Score = 272 (100.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 1 MLILATFVPTTDNFSGGV-DVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT + GG+ D G+ +K S+D+ D +G LV+S GKG KI+ A +GW
Sbjct: 50 MLFLATFFPT---WEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGW 106
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
A AE+I++R + LWVGARG EFDWKYIQ S+DSNI L+
Sbjct: 107 ATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLV 144
>RGD|1304706 [details] [associations]
symbol:Tmem147 "transmembrane protein 147" species:10116 "Rattus
norvegicus" [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
RGD:1304706 GO:GO:0016021 GO:GO:0005789 CTD:10430 eggNOG:NOG241002
GeneTree:ENSGT00390000013276 HOGENOM:HOG000005667
HOVERGEN:HBG094059 OMA:GEFMKAT OrthoDB:EOG46144T InterPro:IPR019164
PANTHER:PTHR12869 Pfam:PF09767 EMBL:BC111082 IPI:IPI00206875
RefSeq:NP_001033583.1 UniGene:Rn.66215 STRING:Q2TA63 PRIDE:Q2TA63
Ensembl:ENSRNOT00000028514 GeneID:292792 KEGG:rno:292792
UCSC:RGD:1304706 InParanoid:Q2TA63 NextBio:634803
Genevestigator:Q2TA63 Uniprot:Q2TA63
Length = 224
Score = 272 (100.8 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 54/98 (55%), Positives = 70/98 (71%)
Query: 1 MLILATFVPTTDNFSGGV-DVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML LATF PT + GG+ D G+ +K S+D+ D +G LV+S GKG KI+ A +GW
Sbjct: 50 MLFLATFFPT---WEGGIYDFIGEFMKASVDVADLIGLNLVMSRNAGKGEYKIMVAALGW 106
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
A AE+I++R + LWVGARG EFDWKYIQ S+DSNI L+
Sbjct: 107 ATAELIMSRCIPLWVGARGIEFDWKYIQMSIDSNISLV 144
>DICTYBASE|DDB_G0285381 [details] [associations]
symbol:polD1 "DNA polymerase delta subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;IBA]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0285381 GO:GO:0007346
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000079 GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 OMA:MIEQTKQ GO:GO:0043625 RefSeq:XP_638283.1
HSSP:P26811 STRING:Q54N97 EnsemblProtists:DDB0232268 GeneID:8625091
KEGG:ddi:DDB_G0285381 ProtClustDB:PTZ00166 Uniprot:Q54N97
Length = 1104
Score = 296 (109.3 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 94/331 (28%), Positives = 156/331 (47%)
Query: 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRMLQDSDIT 547
K + G +V+EP GFYD I +DF SLYPSI+ +N+C++T+ + L T
Sbjct: 583 KGEKFQGAIVIEPTPGFYDTPIATLDFTSLYPSIMMAHNLCYSTLLSAEEAKKLPPEIYT 642
Query: 548 T--LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 605
T ++ + G+LP +++L+ +R++ K +K + D RQ ALK++A
Sbjct: 643 TTPFGDHFIKSDTKKGLLPRILEELLSARKKAKDELKNEKDPFKRAV-LDGRQLALKISA 701
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NYE----VIYGDTD 656
NS+YG G + ++ VT+ GRE+L TK +VE Y+ +IYGDTD
Sbjct: 702 NSVYGFTGARVGKLPCLEISRSVTSFGREMLDKTKKIVEERYTIANGYKHDAVIIYGDTD 761
Query: 657 SLMISCNVNDYDSVFKIGNQI-KSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXX- 714
S+M+ V ++G K + + LD + V
Sbjct: 762 SVMVKFGVKTVAEAMEMGRDAAKFVTTTFIRPINLDFEKVYYPYLLMAKKKYAGLYWTKP 821
Query: 715 XXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
+ +M ++KG+++VRRD L ++ +IL E+ L++ E+ K
Sbjct: 822 DIHDRM----DVKGLEMVRRDTCLLVRNVVSTILKKILIEKD---------LKSAEEYTK 868
Query: 775 KIRTDLDNGFVPLTLLEITKQLTKAPEGGKV 805
+ +DL + L++L ITK L+K GKV
Sbjct: 869 SVISDLLQNRLDLSMLVITKALSKTQYKGKV 899
Score = 53 (23.7 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 347 FLENLLLERKIKGPSWLEFP-EAEKFPSR-ISWCKYEVQCNQMEKIRS 392
F L+++ I G SW+E P K +S C+ EV + +E I S
Sbjct: 259 FALRFLIDKGITGCSWIELPANTYKLSETPVSTCQIEVDTS-LETIIS 305
>FB|FBgn0015338 [details] [associations]
symbol:CG5861 species:7227 "Drosophila melanogaster"
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] GO:GO:0006911
EMBL:AE014134 eggNOG:NOG241002 GeneTree:ENSGT00390000013276
OMA:GEFMKAT InterPro:IPR019164 PANTHER:PTHR12869 Pfam:PF09767
EMBL:AY071295 RefSeq:NP_609789.1 UniGene:Dm.8780 STRING:Q9V3I6
EnsemblMetazoa:FBtr0080850 GeneID:34965 KEGG:dme:Dmel_CG5861
UCSC:CG5861-RA FlyBase:FBgn0015338 InParanoid:Q9V3I6
OrthoDB:EOG4FN30P GenomeRNAi:34965 NextBio:791125 Uniprot:Q9V3I6
Length = 227
Score = 266 (98.7 bits), Expect = 5.6e-22, P = 5.6e-22
Identities = 51/98 (52%), Positives = 72/98 (73%)
Query: 1 MLILATFVPT-TDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGW 59
ML+LATF + + SG + F ++++ S+D+ D +G L+LS IPGKGH+K++TAG+GW
Sbjct: 49 MLVLATFFYSDAPSSSGEFNFFAEILRCSMDIADLLGFALILSRIPGKGHSKLITAGLGW 108
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
A AEVIL+R + LWVGARG EF W YI L+SN+ L+
Sbjct: 109 ATAEVILSRGIMLWVGARGTEFSWIYILKCLESNVLLV 146
>ASPGD|ASPL0000065466 [details] [associations]
symbol:AN7325 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0010972 "negative regulation of G2/M transition of mitotic cell
cycle" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 290 (107.1 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 93/322 (28%), Positives = 157/322 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR-----MLQDSD--ITT 548
Y G V+EP + +YD I +DF SLYPSIIQ +N+C+TT+ + M +D D +T
Sbjct: 576 YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVAGMKKDEDYIVTP 635
Query: 549 LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLTAN 606
+ +V G+L +++L+ +R++ K + Q +D + + RQ ALK++AN
Sbjct: 636 NGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQ---ETDPFKKAVLNGRQLALKVSAN 692
Query: 607 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTDS 657
S+YG G + +A+ T+ GR+++ TK VE + + +VIYGDTDS
Sbjct: 693 SVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAKVIYGDTDS 752
Query: 658 LMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 716
+M+ V + + K+G + + K K ++L+ + V
Sbjct: 753 VMVKFGVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT--- 809
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 776
N K + KG++ VRRD L + V+ +IL +D ++ E++K
Sbjct: 810 NPKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKIL---------IDRDVEAAQEYVKDT 860
Query: 777 RTDLDNGFVPLTLLEITKQLTK 798
+DL + ++ L ITK LTK
Sbjct: 861 ISDLLQNKIDMSKLVITKALTK 882
Score = 47 (21.6 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 347 FLENLLLERKIKGPSWLEFPEAEKF----PS-RISWCKYEVQ 383
+L +++ I+G SW+E P A K+ P ++S C+ E +
Sbjct: 244 YLLRFMIDTDIQGMSWVEAP-AGKYELIAPQDKVSNCQLEAR 284
Score = 40 (19.1 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 251 VQNIDRKIYLLPRSEHLK-TKEPVSIAQVYSEFDQIATQYKILDFKSRKI 299
+ N D YLL R++HLK T P ++ + + ++ K +F S+++
Sbjct: 393 IANFDFP-YLLDRAKHLKCTNFPY-----WTRLNGMRSEAKDTNFSSKQM 436
>UNIPROTKB|Q5AWK5 [details] [associations]
symbol:AN7325.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625
OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 290 (107.1 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 93/322 (28%), Positives = 157/322 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR-----MLQDSD--ITT 548
Y G V+EP + +YD I +DF SLYPSIIQ +N+C+TT+ + M +D D +T
Sbjct: 576 YEGATVIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNKNSVAGMKKDEDYIVTP 635
Query: 549 LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI--RQKALKLTAN 606
+ +V G+L +++L+ +R++ K + Q +D + + RQ ALK++AN
Sbjct: 636 NGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQ---ETDPFKKAVLNGRQLALKVSAN 692
Query: 607 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTDS 657
S+YG G + +A+ T+ GR+++ TK VE + + +VIYGDTDS
Sbjct: 693 SVYGLTGATVGKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIANGYSHDAKVIYGDTDS 752
Query: 658 LMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXX 716
+M+ V + + K+G + + K K ++L+ + V
Sbjct: 753 VMVKFGVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAGLYWT--- 809
Query: 717 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 776
N K + KG++ VRRD L + V+ +IL +D ++ E++K
Sbjct: 810 NPKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKIL---------IDRDVEAAQEYVKDT 860
Query: 777 RTDLDNGFVPLTLLEITKQLTK 798
+DL + ++ L ITK LTK
Sbjct: 861 ISDLLQNKIDMSKLVITKALTK 882
Score = 47 (21.6 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 347 FLENLLLERKIKGPSWLEFPEAEKF----PS-RISWCKYEVQ 383
+L +++ I+G SW+E P A K+ P ++S C+ E +
Sbjct: 244 YLLRFMIDTDIQGMSWVEAP-AGKYELIAPQDKVSNCQLEAR 284
Score = 40 (19.1 bits), Expect = 1.2e-20, Sum P(2) = 1.2e-20
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 251 VQNIDRKIYLLPRSEHLK-TKEPVSIAQVYSEFDQIATQYKILDFKSRKI 299
+ N D YLL R++HLK T P ++ + + ++ K +F S+++
Sbjct: 393 IANFDFP-YLLDRAKHLKCTNFPY-----WTRLNGMRSEAKDTNFSSKQM 436
>POMBASE|SPBC336.04 [details] [associations]
symbol:cdc6 "DNA polymerase delta catalytic subunit Cdc6"
species:4896 "Schizosaccharomyces pombe" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 PomBase:SPBC336.04 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000731
GO:GO:0043137 GO:GO:0010972 GO:GO:0003887 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 EMBL:X59278 EMBL:L07734 EMBL:AB027796 PIR:S19661
PIR:T40242 PIR:T43266 RefSeq:NP_596124.1 ProteinModelPortal:P30316
IntAct:P30316 STRING:P30316 EnsemblFungi:SPBC336.04.1
GeneID:2540255 KEGG:spo:SPBC336.04 OrthoDB:EOG4B01XB
NextBio:20801385 Uniprot:P30316
Length = 1086
Score = 265 (98.3 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 73/201 (36%), Positives = 115/201 (57%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIP-------VRMLQDSD--I 546
Y G V+EP KG+YD I +DF+SLYPSI+Q +N+C+TT+ +++ QD D +
Sbjct: 566 YEGATVIEPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLLDSNTAELLKLKQDVDYSV 625
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPNLSSDLLMQYDIRQKALKLTA 605
T +Y + V G+LP + L+ +R++ KA L K+ + ++ D RQ ALK++A
Sbjct: 626 TPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKKETDPFKKAVL--DGRQLALKVSA 683
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDT-DSLMISCNV 664
NS+YG G N R +++ VT+ GR+++ TK +VE Y + G + D+++I
Sbjct: 684 NSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEK-RYRIENGYSHDAVVI---Y 739
Query: 665 NDYDSVF-KIGNQIKSECNKL 684
D DSV K G + E KL
Sbjct: 740 GDTDSVMVKFGVKTLPEAMKL 760
Score = 207 (77.9 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 77/287 (26%), Positives = 132/287 (45%)
Query: 538 VRMLQDSD--ITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPNLSSDLLMQY 594
+++ QD D +T +Y + V G+LP + L+ +R++ KA L K+ + ++
Sbjct: 615 LKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKKETDPFKKAVL-- 672
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NYE 649
D RQ ALK++ANS+YG G N R +++ VT+ GR+++ TK +VE Y
Sbjct: 673 DGRQLALKVSANSVYGFTGATNGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYS 732
Query: 650 ----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXX 704
VIYGDTDS+M+ V K+G + + + + ++L+ + V
Sbjct: 733 HDAVVIYGDTDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISK 792
Query: 705 XXXXXXXXXXXXN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
KM + KG++ VRRD L S +VI L + +D
Sbjct: 793 KRYAGLFWTRTDTYDKM----DSKGIETVRRDNCPLVS----YVIDTALRKML-----ID 839
Query: 764 DRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQI 810
++ KK+ +DL + ++ L ITK L+K K+ ++
Sbjct: 840 QDVEGAQLFTKKVISDLLQNKIDMSQLVITKALSKTDYAAKMAHVEL 886
Score = 62 (26.9 bits), Expect = 3.8e-20, Sum P(2) = 3.8e-20
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAE---KFPSRISWCKYEVQCNQMEKI 390
F + T +L +++ + G +W+ P ++ ++ +R+S C+ E N + I
Sbjct: 228 FESNTQYLLRFMIDCDVVGMNWIHLPASKYQFRYQNRVSNCQIEAWINYKDLI 280
Score = 38 (18.4 bits), Expect = 4.2e-13, Sum P(3) = 4.2e-13
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 523 PSIIQEYNICFTTIP 537
P ++ YNIC IP
Sbjct: 374 PDVLIGYNICNFDIP 388
>MGI|MGI:97741 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10090 "Mus musculus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IBA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=ISO] [GO:0006261 "DNA-dependent DNA replication"
evidence=ISO] [GO:0006287 "base-excision repair, gap-filling"
evidence=ISO;IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO;IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 MGI:MGI:97741 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 GO:GO:0000109 EMBL:Z21848 EMBL:AF024570 EMBL:AK167569
EMBL:AK168967 EMBL:AK169040 IPI:IPI00323143 PIR:S40243
RefSeq:NP_035261.3 UniGene:Mm.16549 ProteinModelPortal:P52431
SMR:P52431 IntAct:P52431 STRING:P52431 PhosphoSite:P52431
PaxDb:P52431 PRIDE:P52431 Ensembl:ENSMUST00000049343 GeneID:18971
KEGG:mmu:18971 InParanoid:Q3TFX6 OrthoDB:EOG4KWJS2 ChiTaRS:POLD1
NextBio:295320 PMAP-CutDB:P52431 Bgee:P52431 Genevestigator:P52431
GermOnline:ENSMUSG00000038644 Uniprot:P52431
Length = 1105
Score = 284 (105.0 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 97/326 (29%), Positives = 157/326 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 579 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 638
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY-DIRQKALKLTA 605
E++ + V G+LP ++ L+ +R++ KA + Q + L Q D RQ ALK++A
Sbjct: 639 PTGDEFV-KSSVRKGLLPQILENLLSARKRAKAELAQE--TDPLRRQVLDGRQLALKVSA 695
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE+ N +V+YGDTD
Sbjct: 696 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVVYGDTD 755
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXX--XXXXXXXXXXXXXXXX 713
S+M V+ +G + + + + + L+ + V
Sbjct: 756 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSR 815
Query: 714 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ KM C KG++ VRRD L + + +IL D D + H
Sbjct: 816 SDAHDKMDC----KGLEAVRRDNCPLVANLVTSSLRRIL-----VDRDPDGAVA----HA 862
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 863 KDVISDLLCNRIDISQLVITKELTRA 888
Score = 41 (19.5 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAE---KFPSRISWCKYEV 382
+ F +++ I G +WLE P + + + + C+ EV
Sbjct: 242 YEANVDFEIRFMVDADIVGCNWLELPAGKYVRRAEKKATLCQLEV 286
>ZFIN|ZDB-GENE-060429-1 [details] [associations]
symbol:pold1 "polymerase (DNA directed), delta 1,
catalytic subunit" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IBA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA]
[GO:0045004 "DNA replication proofreading" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IBA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 ZFIN:ZDB-GENE-060429-1
GO:GO:0007346 GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
EMBL:AY883095 IPI:IPI00631610 RefSeq:NP_001034899.1
UniGene:Dr.49022 ProteinModelPortal:Q2KNE0 STRING:Q2KNE0
GeneID:556456 KEGG:dre:556456 InParanoid:Q2KNE0 NextBio:20881495
ArrayExpress:Q2KNE0 Uniprot:Q2KNE0
Length = 1105
Score = 275 (101.9 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 94/328 (28%), Positives = 153/328 (46%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRML---QDSDITT 548
Y+G V+EP+KG+Y I +DF+SLYPSI+ +N+C+TT+ + L D I T
Sbjct: 585 YTGATVIEPEKGYYSVPIATLDFSSLYPSIMMAHNLCYTTLLQKSQIEKLGLGPDDFIKT 644
Query: 549 LC-EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLTA 605
+ + V G+LP ++ L+ +R++ KA +K+ +L D RQ ALK++A
Sbjct: 645 PTGDLFVKSSVRKGLLPEILENLLSARKRAKAELKKETDPFKKQVL---DGRQLALKISA 701
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NYE----VIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE+ Y+ VIYGDTD
Sbjct: 702 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLVESRYTLDNGYQADAKVIYGDTD 761
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVXX--XXXXXXXXXXXXXXXX 713
S+M+ V G + + + ++L+ + V
Sbjct: 762 SVMVKLGVATVQEAMNQGKEAAEWVSSHFVPPIKLEFEKVYYPYLLINKKRYAGLYFSSS 821
Query: 714 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ KM C KG++ VRRD L + + IL D D + H
Sbjct: 822 AEHHDKMDC----KGIETVRRDNCPLVANLINTCLQNIL-----IDRDPDGAVT----HA 868
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPE 801
K++ +DL + ++ L ITK+LT+ +
Sbjct: 869 KEVISDLLCNRIDISQLVITKELTRTAQ 896
Score = 50 (22.7 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAE--------------KFPSRISWCKYEV 382
F F +++ + G W+E P+ + K+P ++S C+YEV
Sbjct: 237 FEANIDFEIRFMVDSNVVGCCWIELPKGKYQLREERREGQTDSKYPGKVSLCQYEV 292
>UNIPROTKB|A8HPJ0 [details] [associations]
symbol:POLD1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 EMBL:DS496108 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GO:GO:0043625 ProtClustDB:CLSN2698457
RefSeq:XP_001689909.1 UniGene:Cre.7835 STRING:A8HPJ0
EnsemblPlants:EDP09647 GeneID:5715105 KEGG:cre:CHLREDRAFT_189721
BioCyc:CHLAMY:CHLREDRAFT_189721-MONOMER Uniprot:A8HPJ0
Length = 1091
Score = 281 (104.0 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 95/334 (28%), Positives = 164/334 (49%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR-ML-----QDSDITTL 549
Y G VL+PK GFYD+ + +DF SLYPSI+ +N+C+TT+ + L +D + +
Sbjct: 570 YEGATVLDPKIGFYDRPVATLDFASLYPSIMMAHNLCYTTLLTKDQLNIVPPEDREQSPS 629
Query: 550 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
++ + G+LP +++L+ +R++ K +K + D RQ ALK++ANS+Y
Sbjct: 630 GDWFVRNSRQRGLLPEILEELLAARKRAKNDLKAEKDPFKRAV-LDGRQLALKVSANSVY 688
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN----LN-YE----VIYGDTDSLMI 660
G G + ++A T+ GRE+++ T+ LV+ N YE VIYGDTDS+M+
Sbjct: 689 GFTGATVGKMPCLAISASTTSYGREMIMTTRQLVQEHYTRANGYETDCEVIYGDTDSVMV 748
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX-XXNG 718
+ V D ++G + + +K + ++L+ + V +
Sbjct: 749 NFKVADVARAMELGREAAAVVSKAFPPPVKLEFEKVYYPYLLMNKKRYAGLLWTRPETHD 808
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
KM + KG++ VRRD L + +IL + +Q ++K +
Sbjct: 809 KM----DSKGIETVRRDNCLLVRNVVTTCLERIL---------IGKDVQGAVGYVKGVIA 855
Query: 779 DLDNGFVPLTLLEITKQLTK-APE-GGKVCITQI 810
DL + L+LL I+K LT+ A E GK+ ++
Sbjct: 856 DLLMNKIDLSLLVISKGLTQDADEYEGKIAHVEL 889
Score = 39 (18.8 bits), Expect = 1.7e-19, Sum P(2) = 1.7e-19
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 347 FLENLLLERKIKGPSWLEFP 366
F +++ K+ G +W+E P
Sbjct: 231 FTLRFMVDCKVVGGNWVELP 250
>WB|WBGene00008645 [details] [associations]
symbol:F10C2.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0035188 "hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 269 (99.8 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 90/321 (28%), Positives = 156/321 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLC-E 551
Y G V++P +GFY++ I +DF SLYPSI+ +N+C+TT+ P + + I T +
Sbjct: 553 YEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVENEDYIRTPSGQ 612
Query: 552 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGC 611
Y G+LP ++ ++ +R++ K MK M Y+ RQ ALK++ANS+YG
Sbjct: 613 YFATKSKRRGLLPEILEDILAARKRAKNDMKNEK-DEFKRMVYNGRQLALKISANSVYGF 671
Query: 612 LGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL------------NYEVIYGDTDSLM 659
G + ++ VTA GR+++ TK VE + + +VIYGDTDS+M
Sbjct: 672 TGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPADAKVIYGDTDSVM 731
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNG 718
+ V +IG E +K++ ++L+ + V
Sbjct: 732 VKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINKKRYAGLYFT---KP 788
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
+ + KG++ VRRD L ++ + ++L E+ D+ Q+ + K+ +
Sbjct: 789 DVHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIER--------DQ-QSALDFAKRTIS 839
Query: 779 DLDNGFVPLTLLEITKQLTKA 799
DL + ++LL I+K+LTK+
Sbjct: 840 DLLCNKIDISLLIISKELTKS 860
>UNIPROTKB|P90829 [details] [associations]
symbol:F10C2.4 "DNA polymerase delta catalytic subunit"
species:6239 "Caenorhabditis elegans" [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 269 (99.8 bits), Expect = 1.9e-19, P = 1.9e-19
Identities = 90/321 (28%), Positives = 156/321 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI---PVRMLQDSDITTLC-E 551
Y G V++P +GFY++ I +DF SLYPSI+ +N+C+TT+ P + + I T +
Sbjct: 553 YEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQGVENEDYIRTPSGQ 612
Query: 552 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGC 611
Y G+LP ++ ++ +R++ K MK M Y+ RQ ALK++ANS+YG
Sbjct: 613 YFATKSKRRGLLPEILEDILAARKRAKNDMKNEK-DEFKRMVYNGRQLALKISANSVYGF 671
Query: 612 LGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL------------NYEVIYGDTDSLM 659
G + ++ VTA GR+++ TK VE + + +VIYGDTDS+M
Sbjct: 672 TGATVGKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPADAKVIYGDTDSVM 731
Query: 660 ISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNG 718
+ V +IG E +K++ ++L+ + V
Sbjct: 732 VKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINKKRYAGLYFT---KP 788
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
+ + KG++ VRRD L ++ + ++L E+ D+ Q+ + K+ +
Sbjct: 789 DVHDKMDCKGLETVRRDNCPLVAKVLGVCLEKLLIER--------DQ-QSALDFAKRTIS 839
Query: 779 DLDNGFVPLTLLEITKQLTKA 799
DL + ++LL I+K+LTK+
Sbjct: 840 DLLCNKIDISLLIISKELTKS 860
>FB|FBgn0263600 [details] [associations]
symbol:DNApol-delta "DNA-polymerase-delta" species:7227
"Drosophila melanogaster" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;NAS;IDA] [GO:0043625 "delta DNA polymerase
complex" evidence=ISS;IDA] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=IDA] [GO:0006273 "lagging strand elongation"
evidence=NAS] [GO:0006272 "leading strand elongation" evidence=NAS]
[GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=NAS] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005875 EMBL:AE014296
GO:GO:0022008 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006974 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0008296 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0043625 EMBL:X88928
EMBL:AY113526 RefSeq:NP_524099.2 UniGene:Dm.2838
ProteinModelPortal:P54358 SMR:P54358 DIP:DIP-22360N IntAct:P54358
MINT:MINT-877114 STRING:P54358 PaxDb:P54358
EnsemblMetazoa:FBtr0075522 GeneID:39746 KEGG:dme:Dmel_CG5949
CTD:39746 FlyBase:FBgn0263600 InParanoid:P54358 OMA:RSFRPYF
OrthoDB:EOG4RFJ7F PhylomeDB:P54358 GenomeRNAi:39746 NextBio:815171
Bgee:P54358 GermOnline:CG5949 Uniprot:P54358
Length = 1092
Score = 279 (103.3 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 98/334 (29%), Positives = 161/334 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-------PVRM---LQDSD 545
Y G V+EPK+G+Y I +DF SLYPSI+ +N+C+TT+ +R LQD
Sbjct: 566 YEGATVIEPKRGYYADPISTLDFASLYPSIMMAHNLCYTTLVLGGTREKLRQQENLQDDQ 625
Query: 546 I--TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQ--YDIRQKAL 601
+ T Y + +V G+LP ++ L+ +R++ K +K + +D + D RQ AL
Sbjct: 626 VERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK---VETDPFKRKVLDGRQLAL 682
Query: 602 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN----LN-YE----VIY 652
K++ANS+YG G + ++ VTA GR ++ TK+ VE+ N YE VIY
Sbjct: 683 KISANSVYGFTGAQVGKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIY 742
Query: 653 GDTDSLMISCNVNDYDSVFKIGNQIKS-ECNKLYKQLELDIDGVXXXXXXXXXXXXXXXX 711
GDTDS+M++ V + ++G + +K ++L+ + V
Sbjct: 743 GDTDSVMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLY 802
Query: 712 XXXXXN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
KM C KG++ VRRD S L + + ++L E+ D ++
Sbjct: 803 FTRPDTYDKMDC----KGIETVRRDNSPLVANLMNSCLQKLLIERD-PDGAV-------- 849
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGK 804
++K++ DL + ++ L ITK+L K K
Sbjct: 850 AYVKQVIADLLCNRIDISHLVITKELAKTDYAAK 883
Score = 40 (19.1 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 237 FVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTK 270
FV+E + + N D YLL R+ HLK +
Sbjct: 368 FVREVDPDILTGYNINNFDFP-YLLNRAAHLKVR 400
>UNIPROTKB|K7GQ23 [details] [associations]
symbol:LOC100627036 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR012337 Pfam:PF03104 SUPFAM:SSF53098
GeneTree:ENSGT00550000074891 EMBL:CU207412 EMBL:FP339588
Ensembl:ENSSSCT00000035548 Uniprot:K7GQ23
Length = 135
Score = 189 (71.6 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 35/65 (53%), Positives = 43/65 (66%)
Query: 317 LEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRIS 376
++ + A+ P LP DL G+TFSHVFGT TS LE L+ RKIKGP WLE + IS
Sbjct: 32 MKFKSKAEMPQLPQDLKGETFSHVFGTNTSSLELFLMNRKIKGPCWLEVKNPQLLNQPIS 91
Query: 377 WCKYE 381
WCK+E
Sbjct: 92 WCKFE 96
Score = 76 (31.8 bits), Expect = 4.1e-19, Sum P(2) = 4.1e-19
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 272 PVSIAQVYSEFDQ-IATQYKILDFKSR 297
PV++ VY EFD+ IA +YKI+ FKS+
Sbjct: 11 PVTMKDVYDEFDEKIAAKYKIMKFKSK 37
>RGD|621839 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IEA;ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA;ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO;IMP;IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA;ISO;IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IEA;ISO;IBA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA;ISO;IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IC;IBA] [GO:0045004 "DNA replication
proofreading" evidence=IEA;ISO;IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 275 (101.9 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 95/326 (29%), Positives = 156/326 (47%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 577 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 636
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY-DIRQKALKLTA 605
E++ + V G+LP ++ L+ +R++ KA + Q + L Q D RQ ALK++
Sbjct: 637 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAQE--TDPLRRQVLDGRQLALKVSP 693
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDTD
Sbjct: 694 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGYDANAKVVYGDTD 753
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXX--XXXXXXXXXXXXXXXX 713
S+M V+ +G + + + + + L+ + V
Sbjct: 754 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSR 813
Query: 714 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ +M C KG++ VRRD L + + +IL D D + H
Sbjct: 814 SDAHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL-----VDRDPDGAVA----HA 860
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 861 KDVISDLLCNRIDISQLVITKELTRA 886
Score = 41 (19.5 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAE---KFPSRISWCKYEV 382
+ F +++ I G +WLE P + + + + C+ EV
Sbjct: 240 YEANVDFEIRFMVDADIVGCNWLELPAGKYVRRAEKKATLCQLEV 284
>UNIPROTKB|O54747 [details] [associations]
symbol:Pold1 "DNA polymerase delta catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 275 (101.9 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 95/326 (29%), Positives = 156/326 (47%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 577 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKT 636
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY-DIRQKALKLTA 605
E++ + V G+LP ++ L+ +R++ KA + Q + L Q D RQ ALK++
Sbjct: 637 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAQE--TDPLRRQVLDGRQLALKVSP 693
Query: 606 NSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDTD 656
NS+YG G + ++ VT GR+++ TK LVE + N +V+YGDTD
Sbjct: 694 NSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGYDANAKVVYGDTD 753
Query: 657 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXX--XXXXXXXXXXXXXXXX 713
S+M V+ +G + + + + + L+ + V
Sbjct: 754 SVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSR 813
Query: 714 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ +M C KG++ VRRD L + + +IL D D + H
Sbjct: 814 SDAHDRMDC----KGLEAVRRDNCPLVANLVTSSLRRIL-----VDRDPDGAVA----HA 860
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKA 799
K + +DL + ++ L ITK+LT+A
Sbjct: 861 KDVISDLLCNRIDISQLVITKELTRA 886
Score = 41 (19.5 bits), Expect = 5.0e-19, Sum P(2) = 5.0e-19
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAE---KFPSRISWCKYEV 382
+ F +++ I G +WLE P + + + + C+ EV
Sbjct: 240 YEANVDFEIRFMVDADIVGCNWLELPAGKYVRRAEKKATLCQLEV 284
>UNIPROTKB|P28340 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IDA;IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IDA;TAS] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006287 "base-excision repair, gap-filling" evidence=IDA]
[GO:0000109 "nucleotide-excision repair complex" evidence=IDA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IC;IMP;TAS] [GO:0009411 "response to UV" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 EMBL:AY129569
GO:GO:0007346 GO:GO:0009411 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000722 GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283
GO:GO:0043137 GO:GO:0003887 GO:GO:0032201 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
OMA:MIEQTKQ GO:GO:0043625 EMBL:M80397 EMBL:M81735 EMBL:BC008800
IPI:IPI00002894 PIR:A41618 RefSeq:NP_001243778.1 RefSeq:NP_002682.2
UniGene:Hs.279413 ProteinModelPortal:P28340 SMR:P28340
IntAct:P28340 MINT:MINT-1414678 STRING:P28340 PhosphoSite:P28340
DMDM:50403732 PaxDb:P28340 PRIDE:P28340 DNASU:5424
Ensembl:ENST00000440232 GeneID:5424 KEGG:hsa:5424 UCSC:uc002psb.4
GeneCards:GC19P050889 H-InvDB:HIX0202825 HGNC:HGNC:9175
HPA:CAB004375 MIM:174761 neXtProt:NX_P28340 PharmGKB:PA33496
PhylomeDB:P28340 BindingDB:P28340 ChEMBL:CHEMBL2735 GenomeRNAi:5424
NextBio:20985 PMAP-CutDB:P28340 Bgee:P28340 CleanEx:HS_POLD1
Genevestigator:P28340 GermOnline:ENSG00000062822 GO:GO:0000109
Uniprot:P28340
Length = 1107
Score = 266 (98.7 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 94/327 (28%), Positives = 159/327 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 581 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTEDQFIRT 640
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 641 PTGDEFV-KTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 696
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NY----EVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE+ Y +V+YGDT
Sbjct: 697 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAKVVYGDT 756
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 714
DS+M V+ +G + + + + L+ + V
Sbjct: 757 DSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 816
Query: 715 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ +M C KG++ VRRD L + + ++L +D + H
Sbjct: 817 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPEGAVAH 863
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRA 890
Score = 46 (21.3 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQME 388
+ F +++ I G +WLE P A K+ R+ + QC Q+E
Sbjct: 244 YEANVDFEIRFMVDTDIVGCNWLELP-AGKYALRLK--EKATQC-QLE 287
>GENEDB_PFALCIPARUM|PF10_0165 [details] [associations]
symbol:PF10_0165 "DNA polymerase delta
catalytic subunit" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 ProtClustDB:PTZ00166 GO:GO:0008310
RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 252 (93.8 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 97/325 (29%), Positives = 160/325 (49%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTL- 549
Y G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ V LQ+ DITT+
Sbjct: 577 YEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQ 636
Query: 550 ----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 605
+++ ++ V GILP +++L+E+R++VK L+K ++ M + RQ ALK++A
Sbjct: 637 GKNNLKFVKKN-VKKGILPLIVEELIEARKKVKLLIKNEK-NNITKMVLNGRQLALKISA 694
Query: 606 NSMYGCLGFPNS-RFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNV 664
NS+YG G + + +A +T GR ++ TK VE+ + + +S +I
Sbjct: 695 NSVYGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVI---Y 751
Query: 665 NDYDSVF-KIG-NQI-------KSECNKLYKQLELDID-GVXXXXXXXXXXXXXXXXXXX 714
D DSV K G N I K ++ K+ I
Sbjct: 752 GDTDSVMVKFGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLL 811
Query: 715 XXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
N + KG++ VRRD+ L + + V++++L E++ L + E+ K
Sbjct: 812 YTNPNKHDKMDCKGIETVRRDFCILIQQMMETVLNKLLIEKN---------LNSAIEYTK 862
Query: 775 -KIRTDLDNGFVPLTLLEITKQLTK 798
KI+ L N + ++LL +TK L K
Sbjct: 863 SKIKELLTNN-IDMSLLVVTKSLGK 886
Score = 60 (26.2 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 30/153 (19%), Positives = 62/153 (40%)
Query: 248 CVIVQNIDR--KIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIE--KKY 303
C ++ N+ + + + + ++ + + + +E + +QYKI + K KIE K
Sbjct: 129 CSVLINVHNFFPYFYVEKPDDFDNEDLIKLEMLMNENLNLNSQYKIYEKKILKIEIVKTE 188
Query: 304 A---FNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSH-------VFGTKTSFLENLLL 353
+ F G D + + V P+L G + V+ F+ ++
Sbjct: 189 SLMYFKKNGKKDFLK-ITVLLPKMVPSLKKYFEGIVHVNNKSIGGIVYEANLPFILRYII 247
Query: 354 ERKIKGPSWLEFPEAEKF----PSRISWCKYEV 382
+ KI G SW+ + + +IS C +E+
Sbjct: 248 DHKITGSSWINCKKGHYYIRNKNKKISNCTFEI 280
Score = 39 (18.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 89 SLDSNIC--LIDKTNKFAAF--QKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLK 144
SL + C LI+ N F F +K D + + K E +EN+ K Y +++LK
Sbjct: 123 SLRKDGCSVLINVHNFFPYFYVEKPDDFDNEDLI-KLEMLMNENLNLNSQYKIYEKKILK 181
>UNIPROTKB|Q7KQL4 [details] [associations]
symbol:PF10_0165 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=ISS] [GO:0043625 "delta DNA
polymerase complex" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 ProtClustDB:PTZ00166
GO:GO:0008310 RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 252 (93.8 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 97/325 (29%), Positives = 160/325 (49%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTL- 549
Y G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ V LQ+ DITT+
Sbjct: 577 YEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKSNHEVSDLQNDDITTIQ 636
Query: 550 ----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTA 605
+++ ++ V GILP +++L+E+R++VK L+K ++ M + RQ ALK++A
Sbjct: 637 GKNNLKFVKKN-VKKGILPLIVEELIEARKKVKLLIKNEK-NNITKMVLNGRQLALKISA 694
Query: 606 NSMYGCLGFPNS-RFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNV 664
NS+YG G + + +A +T GR ++ TK VE+ + + +S +I
Sbjct: 695 NSVYGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVI---Y 751
Query: 665 NDYDSVF-KIG-NQI-------KSECNKLYKQLELDID-GVXXXXXXXXXXXXXXXXXXX 714
D DSV K G N I K ++ K+ I
Sbjct: 752 GDTDSVMVKFGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLL 811
Query: 715 XXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMK 774
N + KG++ VRRD+ L + + V++++L E++ L + E+ K
Sbjct: 812 YTNPNKHDKMDCKGIETVRRDFCILIQQMMETVLNKLLIEKN---------LNSAIEYTK 862
Query: 775 -KIRTDLDNGFVPLTLLEITKQLTK 798
KI+ L N + ++LL +TK L K
Sbjct: 863 SKIKELLTNN-IDMSLLVVTKSLGK 886
Score = 60 (26.2 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
Identities = 30/153 (19%), Positives = 62/153 (40%)
Query: 248 CVIVQNIDR--KIYLLPRSEHLKTKEPVSIAQVYSEFDQIATQYKILDFKSRKIE--KKY 303
C ++ N+ + + + + ++ + + + +E + +QYKI + K KIE K
Sbjct: 129 CSVLINVHNFFPYFYVEKPDDFDNEDLIKLEMLMNENLNLNSQYKIYEKKILKIEIVKTE 188
Query: 304 A---FNLPGVPDLSEYLEVRYSAKCPALPSDLSGDTFSH-------VFGTKTSFLENLLL 353
+ F G D + + V P+L G + V+ F+ ++
Sbjct: 189 SLMYFKKNGKKDFLK-ITVLLPKMVPSLKKYFEGIVHVNNKSIGGIVYEANLPFILRYII 247
Query: 354 ERKIKGPSWLEFPEAEKF----PSRISWCKYEV 382
+ KI G SW+ + + +IS C +E+
Sbjct: 248 DHKITGSSWINCKKGHYYIRNKNKKISNCTFEI 280
Score = 39 (18.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 18/60 (30%), Positives = 28/60 (46%)
Query: 89 SLDSNIC--LIDKTNKFAAF--QKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLK 144
SL + C LI+ N F F +K D + + K E +EN+ K Y +++LK
Sbjct: 123 SLRKDGCSVLINVHNFFPYFYVEKPDDFDNEDLI-KLEMLMNENLNLNSQYKIYEKKILK 181
>UNIPROTKB|E2R5W5 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0045004 "DNA replication proofreading"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0003682 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0000731 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 CTD:5424 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0000109
EMBL:AAEX03000791 RefSeq:XP_851285.1 Ensembl:ENSCAFT00000004726
GeneID:610047 KEGG:cfa:610047 Uniprot:E2R5W5
Length = 1107
Score = 266 (98.7 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 94/327 (28%), Positives = 158/327 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 581 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTKDQFIKT 640
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 641 PTGDEFV-KTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 696
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE+ N +V+YGDT
Sbjct: 697 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSANAKVVYGDT 756
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 714
DS+M V+ +G + + + + L+ + V
Sbjct: 757 DSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFPYLLISKKRYAGLLFSS 816
Query: 715 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 817 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPAGAVAH 863
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRA 890
Score = 45 (20.9 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
+ F +++ I G +WLE P AEK+
Sbjct: 244 YEANVDFEIRFMVDTDIVGCNWLELP-AEKY 273
>UNIPROTKB|J9NS34 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 GeneTree:ENSGT00560000077365
OMA:MIEQTKQ EMBL:AAEX03000791 Ensembl:ENSCAFT00000045094
Uniprot:J9NS34
Length = 1131
Score = 266 (98.7 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 94/327 (28%), Positives = 158/327 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 581 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTKDQFIKT 640
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 641 PTGDEFV-KTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 696
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN---------LNYEVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE+ N +V+YGDT
Sbjct: 697 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSANAKVVYGDT 756
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 714
DS+M V+ +G + + + + L+ + V
Sbjct: 757 DSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFPYLLISKKRYAGLLFSS 816
Query: 715 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 817 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPAGAVAH 863
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRA 890
Score = 45 (20.9 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
+ F +++ I G +WLE P AEK+
Sbjct: 244 YEANVDFEIRFMVDTDIVGCNWLELP-AEKY 273
>UNIPROTKB|E1BNZ6 [details] [associations]
symbol:E1BNZ6 "DNA polymerase" species:9913 "Bos taurus"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 IPI:IPI00706072
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:DAAA02047499 EMBL:DAAA02047500 Ensembl:ENSBTAT00000014714
Uniprot:E1BNZ6
Length = 984
Score = 267 (99.0 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 94/327 (28%), Positives = 158/327 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 580 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKT 639
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 640 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 695
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G R ++ VT GR+++ TK LVE + + +V+YGDT
Sbjct: 696 ANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAKVVYGDT 755
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 714
DS+M V+ +G + + + + L+ + V
Sbjct: 756 DSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 815
Query: 715 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 816 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPSGAVAH 862
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 863 AQDVISDLLCNRIDISQLVITKELTRA 889
Score = 38 (18.4 bits), Expect = 5.4e-18, Sum P(2) = 5.4e-18
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
+ F +++ I G +WLE P A K+
Sbjct: 243 YEANVDFEIRFMVDTDIVGCNWLELP-AGKY 272
>UNIPROTKB|P28339 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IC] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=TAS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 EMBL:M80395 IPI:IPI00706072 PIR:A39299
RefSeq:NP_776852.1 UniGene:Bt.4749 ProteinModelPortal:P28339
IntAct:P28339 STRING:P28339 PRIDE:P28339 GeneID:281990
KEGG:bta:281990 CTD:5424 HOVERGEN:HBG051395 KO:K02327
BindingDB:P28339 ChEMBL:CHEMBL4057 NextBio:20805858
InterPro:IPR025687 Pfam:PF14260 Uniprot:P28339
Length = 1106
Score = 267 (99.0 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 94/327 (28%), Positives = 158/327 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + +D I T
Sbjct: 580 YTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKT 639
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 640 PTGDEFV-KASVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 695
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVE---------NLNYEVIYGDT 655
ANS+YG G R ++ VT GR+++ TK LVE + + +V+YGDT
Sbjct: 696 ANSVYGFTGAQVGRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAKVVYGDT 755
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 714
DS+M V+ +G + + + + L+ + V
Sbjct: 756 DSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSS 815
Query: 715 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 816 RPDAHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPSGAVAH 862
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 863 AQDVISDLLCNRIDISQLVITKELTRA 889
Score = 38 (18.4 bits), Expect = 7.7e-18, Sum P(2) = 7.7e-18
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
+ F +++ I G +WLE P A K+
Sbjct: 243 YEANVDFEIRFMVDTDIVGCNWLELP-AGKY 272
>UNIPROTKB|F1RH32 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:FP102476 RefSeq:XP_003127412.2 Ensembl:ENSSSCT00000003572
GeneID:100525752 KEGG:ssc:100525752 Uniprot:F1RH32
Length = 1107
Score = 259 (96.2 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 94/327 (28%), Positives = 157/327 (48%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--P-----VRMLQDSDITT 548
Y+G V+EP KG+YD I +DF+SLYPSI+ +N+C+TT+ P + + D I T
Sbjct: 581 YTGATVIEPLKGYYDVPITTLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTADQFIKT 640
Query: 549 LC--EYLPEHQVDTGILPSEIKKLVESRRQVKA-LMKQPN-LSSDLLMQYDIRQKALKLT 604
E++ + V G+LP ++ L+ +R++ KA L K+ + L +L D RQ ALK++
Sbjct: 641 PTGDEFV-KTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVL---DGRQLALKVS 696
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL-----NY----EVIYGDT 655
ANS+YG G + ++ VT GR+++ TK LVE+ Y +V+YGDT
Sbjct: 697 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYGTSAKVVYGDT 756
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXX 714
DS+M V+ +G + + + + L+ + V
Sbjct: 757 DSVMCRFGVSSVAEAMALGREAADWVSGHFPAPIRLEFEKVYFPYLLISKKRYAGLLFSS 816
Query: 715 X--XNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEH 772
+ +M C KG++ VRRD L + + ++L +D H
Sbjct: 817 RPDTHDRMDC----KGLEAVRRDNCPLVANLVTASLRRLL---------IDRDPAGAVAH 863
Query: 773 MKKIRTDLDNGFVPLTLLEITKQLTKA 799
+ + +DL + ++ L ITK+LT+A
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRA 890
Score = 37 (18.1 bits), Expect = 7.2e-17, Sum P(2) = 7.2e-17
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 341 FGTKTSFLENLLLERKIKGPSWLEFPEAEKF 371
+ F +++ + G +WLE P A K+
Sbjct: 244 YEANVDFEIRFMVDADVVGCNWLELP-AGKY 273
>UNIPROTKB|Q755K6 [details] [associations]
symbol:AGOS_AFL189W "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB EMBL:AE016819
GenomeReviews:AE016819_GR RefSeq:NP_985361.2 STRING:Q755K6
EnsemblFungi:AAS53185 GeneID:4621586 KEGG:ago:AGOS_AFL189W
Uniprot:Q755K6
Length = 1092
Score = 239 (89.2 bits), Expect = 9.6e-17, Sum P(3) = 9.6e-17
Identities = 70/197 (35%), Positives = 109/197 (55%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRMLQ-----DSDI 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ V+ LQ D I
Sbjct: 582 YQGATVIEPIRGYYDIPIATLDFNSLYPSIMMAHNLCYTTLCNKATVQRLQLKENEDYII 641
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 604
T +Y + GILP +++L+ +R++ K +K+ D+L + RQ ALK++
Sbjct: 642 TPNGDYFVTSKKRRGILPIILEELIAARQRAKGELKKETDPFKKDVL---NGRQLALKIS 698
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG-DTDSLMISCN 663
ANS+YG G + +++ VTA GR ++ TK VE Y + G D++++
Sbjct: 699 ANSVYGFTGATVGKLPCLSISSSVTAYGRTMIETTKRAVEE-KYTIKNGYKHDAIVV--- 754
Query: 664 VNDYDSVF-KIG-NQIK 678
D DSV K G N++K
Sbjct: 755 YGDTDSVMIKFGTNELK 771
Score = 181 (68.8 bits), Expect = 1.6e-10, Sum P(3) = 1.6e-10
Identities = 69/273 (25%), Positives = 125/273 (45%)
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
I+M N Y ++ + + + ++ +D IT +Y + GILP +++L+ +
Sbjct: 611 IMMAHNLCYTTLCNKATV--QRLQLKENEDYIITPNGDYFVTSKKRRGILPIILEELIAA 668
Query: 574 RRQVKALMKQPN--LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
R++ K +K+ D+L + RQ ALK++ANS+YG G + +++ VTA
Sbjct: 669 RQRAKGELKKETDPFKKDVL---NGRQLALKISANSVYGFTGATVGKLPCLSISSSVTAY 725
Query: 632 GREILLNTKSLVENL-----NYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN 682
GR ++ TK VE Y+ V+YGDTDS+MI N+ ++G + + +
Sbjct: 726 GRTMIETTKRAVEEKYTIKNGYKHDAIVVYGDTDSVMIKFGTNELKQTMELGAEAAAYVS 785
Query: 683 KLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLAS 741
L+K + L+ + V + + KG+ VRRD L S
Sbjct: 786 SLFKHPINLEFEKVYFPYLLINKKRYAGLYWTKPEKYDKL---DQKGLASVRRDSCPLVS 842
Query: 742 EAGKFVISQILDEQS------YTDYSLDDRLQN 768
++ IL E++ + + +++D LQN
Sbjct: 843 IVMNKILRMILIERNVPGALKFVENTIEDLLQN 875
Score = 63 (27.2 bits), Expect = 9.6e-17, Sum P(3) = 9.6e-17
Identities = 42/188 (22%), Positives = 76/188 (40%)
Query: 217 LDAFEDI---YKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYL-LPRSEHLKTKEP 272
LDA + + Y GT + + F HS C + +Y+ P + +T P
Sbjct: 114 LDAEQAVLPGYIDGGTSAVV-RFFGVTEQGHSVLCSVT-GFKHYMYVPAPANFDARTDVP 171
Query: 273 VSIAQVYSEFDQIATQYKILDFKS---RKIEKKYAFNLPGVPDLSEYLEVRYS-AKCPAL 328
V + + FD + ++ +S ++K F V D ++R + K
Sbjct: 172 VLVDYLNDMFDGVVDSVEVCQKQSIWGYSGDQKLQFLKVLVADPYGLNKIRTAFEKGYIT 231
Query: 329 PSD--LSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE--KFPS--RISWCKYEV 382
P+D G T ++ ++ L+++ I G SW+ P+ + P +IS C+ EV
Sbjct: 232 PNDTWFQGGTTTY---DNIAYTLRLMIDCGIVGMSWITLPKGKYAMIPKNKKISTCQLEV 288
Query: 383 QCNQMEKI 390
N + I
Sbjct: 289 SINYKDLI 296
Score = 39 (18.8 bits), Expect = 9.6e-17, Sum P(3) = 9.6e-17
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 111 DLKGQGVKHKYEFTADENVYEEVSEKEYTERVL 143
D KG G +E + +E + +E ++VL
Sbjct: 60 DTKGNGDATLFEHELQQMEHESAAAQERNQQVL 92
>UNIPROTKB|Q8X0N7 [details] [associations]
symbol:B10H4.020 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006287 "base-excision
repair, gap-filling" evidence=IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IBA] [GO:0007346 "regulation of
mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB HSSP:Q56366
EMBL:AL670010 ProteinModelPortal:Q8X0N7 STRING:Q8X0N7
Uniprot:Q8X0N7
Length = 1104
Score = 237 (88.5 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 93/325 (28%), Positives = 146/325 (44%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT-IPVRMLQDSDITTLCEYL- 553
Y G V+EP +G+YD I +DF SLYPSI+Q +N+C+TT I R ++ D+ +Y+
Sbjct: 577 YEGATVIEPTRGYYDVPIATLDFASLYPSIMQAHNLCYTTLIKKRDIERWDLKKDEDYIV 636
Query: 554 -PEHQ--VDT----GILPSEIKKLVESRRQVK---ALMKQPNLSSDLLMQYDIRQKALKL 603
P V T G+L +++L+ +R+Q K A+ K P + L + RQ ALK+
Sbjct: 637 TPNGDMFVTTKQRKGLLAQILEELLSARKQAKRELAVEKDPFKKAVL----NGRQLALKV 692
Query: 604 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCN 663
+ANS+YG G N + +A+ VT+ GR+++ TK VE Y + G + +
Sbjct: 693 SANSVYGLTGATNGKLPCLEIASSVTSFGRQMIERTKKEVEE-RYTIANGYSHDAQVI-- 749
Query: 664 VNDYDSVF-KIGNQIKSECNKLYKQLELDIDG---------VXXXXXXXXXXXXXXXXXX 713
D DSV K G + +E KL + + G
Sbjct: 750 YGDTDSVMVKFGTKDLAEAMKLGQDASEYVSGKFIKPIKLEFEKVYFPYLLINKKRYAGL 809
Query: 714 XXXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
+ + KG++ VRRD L + V+ IL +D + ++
Sbjct: 810 YWTKPEKYDKMDTKGIETVRRDNCLLVQTVIEKVLRMIL---------IDQDVPGAQAYV 860
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTK 798
K DL + ++ L ITK LTK
Sbjct: 861 KDTIADLLQNKIDMSKLVITKALTK 885
Score = 46 (21.3 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 251 VQNIDRKIYLLPRSEHLKTKE 271
+ N D YLL R++HLK K+
Sbjct: 394 IANFDFP-YLLDRAKHLKVKD 413
Score = 44 (20.5 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 347 FLENLLLERKIKGPSWLEFPEA--EKFPSRISWCKYEVQCNQMEKIRSK 393
+L +++ I G SW+E P + + S C+ E + + + I K
Sbjct: 247 YLLRFMVDCSIAGMSWVEAPAGSYQLVNDKHSNCQIEAEMSYRDLIAHK 295
>WB|WBGene00022734 [details] [associations]
symbol:ZK418.5 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] EMBL:FO080150
eggNOG:NOG241002 GeneTree:ENSGT00390000013276 HOGENOM:HOG000005667
OMA:GEFMKAT InterPro:IPR019164 PANTHER:PTHR12869 Pfam:PF09767
PIR:T27851 RefSeq:NP_498544.1 ProteinModelPortal:Q23483
DIP:DIP-26344N MINT:MINT-1089014 STRING:Q23483 PaxDb:Q23483
EnsemblMetazoa:ZK418.5 GeneID:175987 KEGG:cel:CELE_ZK418.5
UCSC:ZK418.5 CTD:175987 WormBase:ZK418.5 InParanoid:Q23483
NextBio:890618 Uniprot:Q23483
Length = 225
Score = 204 (76.9 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 39/98 (39%), Positives = 62/98 (63%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSS-IPGKGHAKILTAGVGW 59
+LI+ATF P D S G + + +K S D+ID +G +L++++ + GKG + + G+GW
Sbjct: 50 LLIIATFFPALD--SEGFSIVPEFLKSSADIIDVIGLHLLMTNFLAGKGEVRFVVGGLGW 107
Query: 60 AGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLI 97
A + R + LWVGARG F W+++Q SLDS+ L+
Sbjct: 108 GFAHSVAHRLVLLWVGARGTAFTWRWVQTSLDSSADLL 145
>SGD|S000002260 [details] [associations]
symbol:POL3 "Catalytic subunit of DNA polymerase delta"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=NAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA;TAS] [GO:0006301 "postreplication
repair" evidence=TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=TAS] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IGI] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IMP;IDA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0008296 "3'-5'-exodeoxyribonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 SGD:S000002260 GO:GO:0007346 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0051539
GO:GO:0006298 SUPFAM:SSF53098 GO:GO:0006278 GO:GO:0000084
GO:GO:0006301 EMBL:X95644 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0006272 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00560000077365
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 OrthoDB:EOG4B01XB
EMBL:X15477 EMBL:X61920 EMBL:Z74150 PIR:S67644 RefSeq:NP_010181.2
PDB:3IAY PDBsum:3IAY ProteinModelPortal:P15436 SMR:P15436
DIP:DIP-2524N IntAct:P15436 MINT:MINT-2781941 STRING:P15436
PaxDb:P15436 PeptideAtlas:P15436 EnsemblFungi:YDL102W GeneID:851456
KEGG:sce:YDL102W CYGD:YDL102w NextBio:968726 Genevestigator:P15436
GermOnline:YDL102W GO:GO:0008310 Uniprot:P15436
Length = 1097
Score = 225 (84.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 67/192 (34%), Positives = 104/192 (54%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRMLQ---DSD--I 546
Y G V+EP +G+YD I +DFNSLYPSI+ +N+C+TT+ V L D D I
Sbjct: 587 YEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVI 646
Query: 547 TTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPN--LSSDLLMQYDIRQKALKLT 604
T +Y + GILP + +L+ +R++ K ++ D+L + RQ ALK++
Sbjct: 647 TPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEKDPFKRDVL---NGRQLALKIS 703
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYG-DTDSLMISCN 663
ANS+YG G + +++ VTA GR ++L TK+ V+ Y + G D++++
Sbjct: 704 ANSVYGFTGATVGKLPCLAISSSVTAYGRTMILKTKTAVQE-KYCIKNGYKHDAVVV--- 759
Query: 664 VNDYDSVF-KIG 674
D DSV K G
Sbjct: 760 YGDTDSVMVKFG 771
Score = 176 (67.0 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 71/288 (24%), Positives = 128/288 (44%)
Query: 514 ILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVES 573
I+M N Y ++ + + + +++ +D IT +Y + GILP + +L+ +
Sbjct: 616 IMMAHNLCYTTLCNKATV--ERLNLKIDEDYVITPNGDYFVTTKRRRGILPIILDELISA 673
Query: 574 RRQVKALMKQPN--LSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAK 631
R++ K ++ D+L + RQ ALK++ANS+YG G + +++ VTA
Sbjct: 674 RKRAKKDLRDEKDPFKRDVL---NGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAY 730
Query: 632 GREILLNTKSLVENL-----NYE----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECN 682
GR ++L TK+ V+ Y+ V+YGDTDS+M+ D +G + +
Sbjct: 731 GRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAKYVS 790
Query: 683 KLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRDWSQLAS 741
L+K + L+ + N + KG+ VRRD L S
Sbjct: 791 TLFKHPINLEFE---KAYFPYLLINKKRYAGLFWTNPDKFDKLDQKGLASVRRDSCSLVS 847
Query: 742 EAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 789
V+ +IL E++ D +L + I++ + R D+ + TL
Sbjct: 848 IVMNKVLKKILIERN-VDGALAFVRETINDILHN-RVDISKLIISKTL 893
Score = 49 (22.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 351 LLLERKIKGPSWLEFPEAEKF---PS-RISWCKYEVQCN 385
L+++ I G SW+ P+ + P+ R+S C+ EV N
Sbjct: 258 LMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSIN 296
>TIGR_CMR|SO_1820 [details] [associations]
symbol:SO_1820 "DNA polymerase II" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR SUPFAM:SSF53098
GO:GO:0003887 HOGENOM:HOG000221829 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 RefSeq:NP_717428.1 ProteinModelPortal:Q8EFZ4
GeneID:1169593 KEGG:son:SO_1820 PATRIC:23523263 Uniprot:Q8EFZ4
Length = 808
Score = 217 (81.4 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 80/287 (27%), Positives = 126/287 (43%)
Query: 498 GGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS----DITTLCEYL 553
GG V++ GFY + I++ DF SLYPSII+ + I + + DS + T+ +L
Sbjct: 423 GGYVMDSVPGFY-QHILVFDFKSLYPSIIRTFLIDPKGLIEGLGDDSLVLDESETVTGFL 481
Query: 554 -PEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCL 612
ILP I+ L E R + K P LS +A+K+ NS+YG L
Sbjct: 482 GARFSRRQPILPKLIQTLSEQREKAKREANAP-LS-----------QAIKIIMNSLYGVL 529
Query: 613 GFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN-DYDSVF 671
G F LA+ +T +G +I+ T++ +E + Y+VIYGDTDS + D +
Sbjct: 530 GSQGCVFHDAKLASSITMRGHQIMKQTRAWIEEMGYQVIYGDTDSTFVHLGYEPDLSDIS 589
Query: 672 KIGNQIKSECN-----KLYKQ------LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKM 720
+G QI ++ N K+ K LEL +
Sbjct: 590 ALGKQIAAQINANWQAKITKDFELESFLELQFERHYEQFFMPTLRGSEEGSKKRYVGAWR 649
Query: 721 ICSQEI----KGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
S E+ KG++ VR DWS LA + + ++ +++ + Y D
Sbjct: 650 NVSGELEITFKGMEQVRSDWSPLARKVQAELYERMFNQRDISGYLAD 696
>UNIPROTKB|A6V6S5 [details] [associations]
symbol:polB "DNA polymerase" species:381754 "Pseudomonas
aeruginosa PA7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:CP000744 GenomeReviews:CP000744_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 HOGENOM:HOG000221829 KO:K02336 ProtClustDB:PRK05762
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
RefSeq:YP_001348760.1 ProteinModelPortal:A6V6S5 SMR:A6V6S5
STRING:A6V6S5 GeneID:5354072 KEGG:pap:PSPA7_3400 PATRIC:19828452
OMA:SATWSFP BioCyc:PAER381754:GHMY-3442-MONOMER Uniprot:A6V6S5
Length = 788
Score = 214 (80.4 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 78/290 (26%), Positives = 126/290 (43%)
Query: 491 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLC 550
++ A GG V++ + G Y+ ++L D+ SLYPSII+ + I + + Q D ++
Sbjct: 397 KRPEASPGGFVMDSRPGLYESVLVL-DYKSLYPSIIRTFLIDPVGLVEGLRQPDDEHSVE 455
Query: 551 EYLPEHQVDTG-ILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
+ T LP+ + ++ E R K QP LS +ALK+ N+ Y
Sbjct: 456 GFRGARFSRTRHCLPAIVARVWEGREAAKRERNQP-LS-----------QALKIIMNAFY 503
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISC-NVNDYD 668
G LG RFF LA+ +T +G I+ T+ L+E Y VIYGDTDS + + + +
Sbjct: 504 GVLGSSGCRFFDPRLASSITLRGHRIMRRTRELIEAEGYTVIYGDTDSTFVWLGSPHAEE 563
Query: 669 SVFKIGNQIKSECNKLYKQ-----------LELDIDGVXXXXXXXXXXXXXXXXXXXXXN 717
IG + + N +++ LEL +
Sbjct: 564 EAAAIGRALVARVNDWWREHLKEEFGLASALELQFETHYRRFLMPTVRGAEEGSKKRYAG 623
Query: 718 --GKMICSQEI--KGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLD 763
+ +E+ KG++ VR DWS LA + + +I + Q Y DY D
Sbjct: 624 LVRRADGGEEMVFKGLETVRTDWSPLAQRFQQELYLRIFNRQPYQDYVRD 673
>UNIPROTKB|P26811 [details] [associations]
symbol:dpo1 "DNA polymerase 1" species:273057 "Sulfolobus
solfataricus P2" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE006641
GenomeReviews:AE006641_GR GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
EMBL:X64466 EMBL:U92875 EMBL:Y18930 PIR:F90201 PIR:S23019
RefSeq:NP_342079.1 PDB:1S5J PDBsum:1S5J ProteinModelPortal:P26811
SMR:P26811 DIP:DIP-48850N GeneID:1454836 KEGG:sso:SSO0552
HOGENOM:HOG000108124 KO:K02319 OMA:HKPYFLT ProtClustDB:PRK05761
EvolutionaryTrace:P26811 Uniprot:P26811
Length = 882
Score = 210 (79.0 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 60/203 (29%), Positives = 100/203 (49%)
Query: 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS-DITTLC 550
K Y G +V++P G + +L DF SLYPSII+ +N+ + T+ ++ + ++
Sbjct: 490 KGKGYKGAVVIDPPAGIFFNITVL-DFASLYPSIIRTWNLSYETVDIQQCKKPYEVKDET 548
Query: 551 -EYLPEHQVDTGILPSEIKKLVESRRQ--VKALMKQPNLSSDLLMQYDIRQKALKLTANS 607
E L +D + + I L+ R K K PN S + + YD+ Q+A+K+ N+
Sbjct: 549 GEVLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINA 608
Query: 608 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSL-MISCNVND 666
YG G +A +A VTA GR ++ +T V+YGDTDSL +++ N
Sbjct: 609 TYGVFGAETFPLYAPAVAESVTALGRYVITSTVKKAREEGLTVLYGDTDSLFLLNPPKNS 668
Query: 667 YDSVFKIGN---QIKSECNKLYK 686
+++ K + E +K YK
Sbjct: 669 LENIIKWVKTTFNLDLEVDKTYK 691
>UNIPROTKB|Q7RSZ8 [details] [associations]
symbol:PY00203 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
GO:GO:0043625 EMBL:AABL01000054 RefSeq:XP_729844.1
ProteinModelPortal:Q7RSZ8 STRING:Q7RSZ8 PRIDE:Q7RSZ8 GeneID:3807142
KEGG:pyo:PY00203 EuPathDB:PlasmoDB:PY00203 Uniprot:Q7RSZ8
Length = 1097
Score = 214 (80.4 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 67/206 (32%), Positives = 108/206 (52%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQDSDITTL- 549
+ G VLEP KG+Y + I +DF SLYPSI+ +N+C++T+ + L +DITT+
Sbjct: 580 FEGATVLEPIKGYYIEPISTLDFASLYPSIMIAHNLCYSTLIKNNDEISDLNKNDITTVP 639
Query: 550 ----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMK-QPNLSSDLLMQYDIRQKALKLT 604
+++ + V G+LP +++L+ +R+ VKA+MK + N + +++ RQ ALK++
Sbjct: 640 GKNNFKFV-KGNVKRGVLPLIVEELIRARKNVKAMMKNEQNPITKMVLNG--RQLALKIS 696
Query: 605 ANSMYGCLGFP-NSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCN 663
ANS+YG G + +A +T GR ++ TK VE Y + +
Sbjct: 697 ANSVYGYTGAAAGGQLPCLEIATSITTFGRSMIEKTKETVE-----AYYCKNNGFEHNAT 751
Query: 664 V--NDYDSVF-KIGNQIKSECNKLYK 686
V D DSV K G E +L K
Sbjct: 752 VVYGDTDSVMVKFGTNDVGEAMRLGK 777
Score = 214 (80.4 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 79/278 (28%), Positives = 136/278 (48%)
Query: 541 LQDSDITTL-----CEYLPEHQVDTGILPSEIKKLVESRRQVKALMK-QPNLSSDLLMQY 594
L +DITT+ +++ + V G+LP +++L+ +R+ VKA+MK + N + +++
Sbjct: 630 LNKNDITTVPGKNNFKFV-KGNVKRGVLPLIVEELIRARKNVKAMMKNEQNPITKMVLNG 688
Query: 595 DIRQKALKLTANSMYGCLGFP-NSRFFAQPLAALVTAKGREILLNTKSLVE-----NLNY 648
RQ ALK++ANS+YG G + +A +T GR ++ TK VE N +
Sbjct: 689 --RQLALKISANSVYGYTGAAAGGQLPCLEIATSITTFGRSMIEKTKETVEAYYCKNNGF 746
Query: 649 E----VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXX 703
E V+YGDTDS+M+ ND ++G +K + ++L+ + V
Sbjct: 747 EHNATVVYGDTDSVMVKFGTNDVGEAMRLGKDAAERISKEFLHPIKLEFEKVYCPYLLLN 806
Query: 704 XXXXXXXXXXX-XXNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSL 762
+ KM C KG++ VRRD+ L + + V++++L E+
Sbjct: 807 KKRYAGLLYTNPNKHDKMDC----KGIETVRRDFCILIQQMMETVLNKLLIEKD------ 856
Query: 763 DDRLQNIHEHMK-KIRTDLDNGFVPLTLLEITKQLTKA 799
L + E+ K KI+ L N + ++LL +TK L KA
Sbjct: 857 ---LNSAIEYTKSKIKDLLTNN-IDMSLLVVTKSLGKA 890
Score = 48 (22.0 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 21/82 (25%), Positives = 35/82 (42%)
Query: 290 KILDFKSRKIEKKYAFNLPGVPDLSEYLEVRYSAKCPALPSDL-SGDTFS--H----VFG 342
KIL ++ K E F G D + + V P+L SG + H V+
Sbjct: 181 KILKIETVKTESIMYFKKSGKTDFLK-ITVLLPKMVPSLKKFFESGINVNSKHFGGIVYE 239
Query: 343 TKTSFLENLLLERKIKGPSWLE 364
F+ ++++KI G SW++
Sbjct: 240 ANLPFILRYIIDKKITGSSWIK 261
>POMBASE|SPAC688.10 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit Rev3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0016035 "zeta DNA
polymerase complex" evidence=ISO] [GO:0042276 "error-prone
translesion synthesis" evidence=ISO] [GO:0043504 "mitochondrial DNA
repair" evidence=IC] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=ISO]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 PomBase:SPAC688.10
GO:GO:0005829 GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0043596 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0070987 GO:GO:0043504 GO:GO:0042276 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 RefSeq:NP_594068.1 HSSP:P21189
ProteinModelPortal:Q9P6L6 STRING:Q9P6L6 EnsemblFungi:SPAC688.10.1
GeneID:2543358 KEGG:spo:SPAC688.10 HOGENOM:HOG000194392 OMA:RVPYLII
OrthoDB:EOG4FN7RT NextBio:20804373 Uniprot:Q9P6L6
Length = 1480
Score = 159 (61.0 bits), Expect = 5.5e-13, Sum P(3) = 5.5e-13
Identities = 65/258 (25%), Positives = 111/258 (43%)
Query: 552 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY-DIRQKALKLTANSMYG 610
Y+ E+ V +L +++L+E+R VK MK + SD + + + RQ ALKL AN YG
Sbjct: 1015 YVKEN-VRKSLLAKMLEELIETRNMVKRGMK--DCDSDYVNKVLNSRQLALKLIANVTYG 1071
Query: 611 CLGFPNS-RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVND 666
S R +A + GREIL + + L++ +V+YGDTDSL +
Sbjct: 1072 YTSASFSGRMPCSEIADTIVETGREILSYSLEYINTLDFCHAKVVYGDTDSLFVELPGAT 1131
Query: 667 YDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQE 725
+ F IG Q+ + + + L + + I E
Sbjct: 1132 KEQAFDIGQQLANNITSRFPSPIRLKFEKIYFPCFLLAKKRYVGFKFESVSQKAPIF--E 1189
Query: 726 IKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNI-HEHMKKIRTDLDNGF 784
KG++ VRRD + + + + + + + + ++ QN+ ++ M +D F
Sbjct: 1190 AKGIETVRRDGTPVQQQLLRRCLEILFKTKDLS--TVKKEFQNVCYQIMSGNVPVMDFCF 1247
Query: 785 VPLTLLEITKQLTKAPEG 802
LE K+L+ AP G
Sbjct: 1248 SKEVRLEKYKELSTAPPG 1265
Score = 117 (46.2 bits), Expect = 5.5e-13, Sum P(3) = 5.5e-13
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRML 541
LV+EPK Y+ ++++DF SLYPSII YN+C++T PV+++
Sbjct: 938 LVMEPKSDLYNNPVVVLDFQSLYPSIIIAYNLCYSTCLGPVKIV 981
Score = 37 (18.1 bits), Expect = 5.5e-13, Sum P(3) = 5.5e-13
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 96 LIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQE 147
L+D + A K+ + + + +F D N+Y + + + ++KR +
Sbjct: 142 LVDLFRQGAILNKVIQVYESHLPYLLQFMVDHNLYG-CAPIDLDDSIIKRDD 192
>UNIPROTKB|P21189 [details] [associations]
symbol:polB "DNA polymerase II" species:83333 "Escherichia
coli K-12" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045004 "DNA replication proofreading"
evidence=IDA] [GO:0009432 "SOS response" evidence=IEA;IEP]
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0008296 "3'-5'-exodeoxyribonuclease activity" evidence=IDA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA;IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005694 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
SUPFAM:SSF53098 EMBL:M35371 EMBL:M62646 EMBL:M37727 EMBL:M38283
GO:GO:0009432 GO:GO:0003887 GO:GO:0006297 EMBL:X54847 PIR:S15943
RefSeq:NP_414602.1 RefSeq:YP_488366.1 PDB:1Q8I PDB:3K57 PDB:3K58
PDB:3K59 PDB:3K5L PDB:3K5M PDB:3K5N PDB:3K5O PDB:3MAQ PDBsum:1Q8I
PDBsum:3K57 PDBsum:3K58 PDBsum:3K59 PDBsum:3K5L PDBsum:3K5M
PDBsum:3K5N PDBsum:3K5O PDBsum:3MAQ ProteinModelPortal:P21189
SMR:P21189 IntAct:P21189 PRIDE:P21189
EnsemblBacteria:EBESCT00000004906 EnsemblBacteria:EBESCT00000016904
GeneID:12932627 GeneID:944779 KEGG:ecj:Y75_p0060 KEGG:eco:b0060
PATRIC:32115221 EchoBASE:EB0740 EcoGene:EG10747 eggNOG:COG0417
HOGENOM:HOG000221829 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
BioCyc:EcoCyc:EG10747-MONOMER BioCyc:ECOL316407:JW0059-MONOMER
BioCyc:MetaCyc:EG10747-MONOMER EvolutionaryTrace:P21189
Genevestigator:P21189 GO:GO:0008296 GO:GO:0045004 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 Uniprot:P21189
Length = 783
Score = 213 (80.0 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 76/282 (26%), Positives = 123/282 (43%)
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLP 554
A GG V++ + G YD ++L D+ SLYPSII+ + I PV +++ + + P
Sbjct: 398 ASPGGYVMDSRPGLYDSVLVL-DYKSLYPSIIRTFLID----PVGLVEG-----MAQPDP 447
Query: 555 EHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGF 614
EH + G L + + ++ + + + Q ALK+ N+ YG LG
Sbjct: 448 EHSTE-GFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQ-ALKIIMNAFYGVLGT 505
Query: 615 PNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCN-VNDYDSVFKI 673
RFF LA+ +T +G +I+ TK+L+E Y+VIYGDTDS + + + KI
Sbjct: 506 TACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKI 565
Query: 674 GNQIKSECNK-----LYKQ-----LELDIDG-----VXXXXXXXXXXXXXXXXXXXXXNG 718
G + N L KQ LEL+ + +
Sbjct: 566 GRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGD 625
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
K KG++ VR DW+ LA + + + +I + Y +Y
Sbjct: 626 KQ--RMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEY 665
Score = 42 (19.8 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 349 ENLLLERKIKGPSWLE 364
E L+ER I P W+E
Sbjct: 112 ERYLMERFITSPVWVE 127
>WB|WBGene00021344 [details] [associations]
symbol:Y37B11A.2 species:6239 "Caenorhabditis elegans"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 158 (60.7 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 53/187 (28%), Positives = 85/187 (45%)
Query: 561 GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFP-NSRF 619
G++P +++++ +R VK+ MK+ + L D RQ ALKL AN YG + R
Sbjct: 717 GVMPLLLREILAARIMVKSAMKRTK-NKKLKRILDARQLALKLVANVSYGYTAANWSGRM 775
Query: 620 FAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
LA + KGRE L + +V+ +Y EVIYGDTDS+ + + F+IG +
Sbjct: 776 PCAELADAILGKGRETLERSIEMVQRGDYGGAEVIYGDTDSMFVLVRGASVEEAFEIGRR 835
Query: 677 IKSEC-NKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRD 735
I + N + L ++ V + S + KG++ VRRD
Sbjct: 836 IVDDVTNSNPDPVVLKLEKVYKGCVLETKKRYAGWMYEHENDEG---SLDAKGIETVRRD 892
Query: 736 WSQLASE 742
+ +E
Sbjct: 893 TCPIVAE 899
Score = 102 (41.0 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
L+LEP+ Y +I++DF SLYPS++ YN C++TI
Sbjct: 621 LILEPQSKVYFDPVIVLDFQSLYPSMVIAYNYCYSTI 657
Score = 46 (21.3 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 331 DLSGDTFSHVFGTKTSFLENLLLERKIKG 359
DL G ++V K L+N L R+IKG
Sbjct: 504 DL-GSAVANVLRKKIPMLDNAALMRRIKG 531
>UNIPROTKB|Q9BKQ3 [details] [associations]
symbol:Y37B11A.2 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005634 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 158 (60.7 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 53/187 (28%), Positives = 85/187 (45%)
Query: 561 GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFP-NSRF 619
G++P +++++ +R VK+ MK+ + L D RQ ALKL AN YG + R
Sbjct: 717 GVMPLLLREILAARIMVKSAMKRTK-NKKLKRILDARQLALKLVANVSYGYTAANWSGRM 775
Query: 620 FAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKIGNQ 676
LA + KGRE L + +V+ +Y EVIYGDTDS+ + + F+IG +
Sbjct: 776 PCAELADAILGKGRETLERSIEMVQRGDYGGAEVIYGDTDSMFVLVRGASVEEAFEIGRR 835
Query: 677 IKSEC-NKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMICSQEIKGVDVVRRD 735
I + N + L ++ V + S + KG++ VRRD
Sbjct: 836 IVDDVTNSNPDPVVLKLEKVYKGCVLETKKRYAGWMYEHENDEG---SLDAKGIETVRRD 892
Query: 736 WSQLASE 742
+ +E
Sbjct: 893 TCPIVAE 899
Score = 102 (41.0 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
L+LEP+ Y +I++DF SLYPS++ YN C++TI
Sbjct: 621 LILEPQSKVYFDPVIVLDFQSLYPSMVIAYNYCYSTI 657
Score = 46 (21.3 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 331 DLSGDTFSHVFGTKTSFLENLLLERKIKG 359
DL G ++V K L+N L R+IKG
Sbjct: 504 DL-GSAVANVLRKKIPMLDNAALMRRIKG 531
>FB|FBgn0002891 [details] [associations]
symbol:mus205 "mutagen-sensitive 205" species:7227
"Drosophila melanogaster" [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS;IBA;NAS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;IDA;NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0019985 "translesion synthesis"
evidence=IBA;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AE013599 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0000724 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
FlyBase:FBgn0002891 EMBL:AF298216 RefSeq:NP_524881.2
UniGene:Dm.10622 SMR:Q9GSR1 MINT:MINT-864058 STRING:Q9GSR1
EnsemblMetazoa:FBtr0088831 GeneID:47186 KEGG:dme:Dmel_CG1925
UCSC:CG1925-RA CTD:47186 InParanoid:Q9GSR1 OMA:IPPLNRC
GenomeRNAi:47186 NextBio:838931 Uniprot:Q9GSR1
Length = 2130
Score = 167 (63.8 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 61/208 (29%), Positives = 96/208 (46%)
Query: 538 VRMLQDSDITTL--CEYL-PEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
++ L + D+ T+ C + + +V GILP + +++++R+ VK MK SS L
Sbjct: 1652 LQKLLEHDLVTVSPCGVVFVKREVREGILPRMLTEILDTRQMVKQSMKLHKDSSALQRIL 1711
Query: 595 DIRQKALKLTANSMYG--CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYE--- 649
RQ LKL AN YG F + R + + V +KGRE L LVEN N E
Sbjct: 1712 HSRQLGLKLMANVTYGYTAANF-SGRMPSVEVGDSVVSKGRETLERAIKLVEN-NEEWKV 1769
Query: 650 -VIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQ-LELDIDGVXXXXXXXXXXXX 707
V+YGDTDS+ + + F+IG +I ++ Q ++L ++ V
Sbjct: 1770 RVVYGDTDSMFVLVPGRNRAEAFRIGEEIAKAVTEMNPQPVKLKLEKVYQPCMLQTKKRY 1829
Query: 708 XXXXXXXXXNGKMICSQEIKGVDVVRRD 735
+ + E KG++ VRRD
Sbjct: 1830 VGYMYETADQEQPV--YEAKGIETVRRD 1855
Score = 107 (42.7 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L++EP+ FY +I++DF SLYPS+I YN CF+T
Sbjct: 1589 LIMEPQSRFYADPLIVLDFQSLYPSMIIAYNYCFST 1624
Score = 38 (18.4 bits), Expect = 2.1e-12, Sum P(3) = 2.1e-12
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 282 FDQIATQYKILDFKSRKIEKKYAFNLPGVPDLSEYLEVRY 321
+D++ + + +D + +K Y N P D+S+ EV +
Sbjct: 1010 YDEVVSGSRKMDIPEYEFQKPYYSN-PS--DVSKVTEVGF 1046
>UNIPROTKB|Q9KSP4 [details] [associations]
symbol:VC_1212 "DNA polymerase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR SUPFAM:SSF53098
GO:GO:0003887 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
Gene3D:3.90.1600.10 InterPro:IPR023211 HSSP:P21189 PIR:E82227
RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4 DNASU:2614645
GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512 Uniprot:Q9KSP4
Length = 787
Score = 202 (76.2 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 62/198 (31%), Positives = 94/198 (47%)
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNI----CFTTIPVRMLQDSDITTLC 550
A GG V++ G YD ++L DF SLYPSII+ + I + + + + +D
Sbjct: 398 ASPGGYVMDSIPGLYDSVLVL-DFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPG 456
Query: 551 EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG 610
+ LP I+KL +R + K Q S +A+K+ NS YG
Sbjct: 457 FRGGQFHRTKHFLPEMIEKLWAARDEAKR--NQEKAFS----------QAIKIIMNSFYG 504
Query: 611 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN-DYDS 669
LG RFF LA+ +T +G EI++ TK L+E Y+VIYGDTDS ++
Sbjct: 505 VLGSSGCRFFDARLASSITMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQE 564
Query: 670 VFKIGNQIKSECNKLYKQ 687
IG+ + E N+ + +
Sbjct: 565 ADNIGHALVREINQWWTE 582
Score = 43 (20.2 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 727 KGVDVVRRDWSQLASEAGKFVISQIL---DEQSY----TDYSLDDRLQNIHEHMKKIRTD 779
KG++ R DW+ LA + I D +SY + +L +L + + K++R
Sbjct: 636 KGLESARTDWTPLAQRFQHQLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRR 695
Query: 780 L 780
L
Sbjct: 696 L 696
>TIGR_CMR|VC_1212 [details] [associations]
symbol:VC_1212 "DNA polymerase II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
SUPFAM:SSF53098 GO:GO:0003887 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 PIR:E82227 RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4
DNASU:2614645 GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512
Uniprot:Q9KSP4
Length = 787
Score = 202 (76.2 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 62/198 (31%), Positives = 94/198 (47%)
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNI----CFTTIPVRMLQDSDITTLC 550
A GG V++ G YD ++L DF SLYPSII+ + I + + + + +D
Sbjct: 398 ASPGGYVMDSIPGLYDSVLVL-DFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPG 456
Query: 551 EYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG 610
+ LP I+KL +R + K Q S +A+K+ NS YG
Sbjct: 457 FRGGQFHRTKHFLPEMIEKLWAARDEAKR--NQEKAFS----------QAIKIIMNSFYG 504
Query: 611 CLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN-DYDS 669
LG RFF LA+ +T +G EI++ TK L+E Y+VIYGDTDS ++
Sbjct: 505 VLGSSGCRFFDARLASSITMRGHEIMIQTKRLIEARGYQVIYGDTDSTFVALGGQYSQQE 564
Query: 670 VFKIGNQIKSECNKLYKQ 687
IG+ + E N+ + +
Sbjct: 565 ADNIGHALVREINQWWTE 582
Score = 43 (20.2 bits), Expect = 9.3e-12, Sum P(2) = 9.3e-12
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 727 KGVDVVRRDWSQLASEAGKFVISQIL---DEQSY----TDYSLDDRLQNIHEHMKKIRTD 779
KG++ R DW+ LA + I D +SY + +L +L + + K++R
Sbjct: 636 KGLESARTDWTPLAQRFQHQLYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRR 695
Query: 780 L 780
L
Sbjct: 696 L 696
>UNIPROTKB|I3L6U8 [details] [associations]
symbol:LOC100737059 "DNA polymerase" species:9823 "Sus
scrofa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GeneTree:ENSGT00550000074640 EMBL:FP102400 RefSeq:XP_003480350.1
Ensembl:ENSSSCT00000026193 GeneID:100737059 KEGG:ssc:100737059
OMA:KATISQY Uniprot:I3L6U8
Length = 721
Score = 122 (48.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 38/125 (30%), Positives = 57/125 (45%)
Query: 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFP 615
V G+LP +++++++R VK MK L + RQ LKL AN +G F
Sbjct: 274 VRKGVLPRMLEEILKTRLMVKQSMKAYKQDRALSRMLEARQLGLKLIANVTFGYTAANF- 332
Query: 616 NSRFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFK 672
+ R + + K RE L LV + V+YGDTDS+ + + FK
Sbjct: 333 SGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFK 392
Query: 673 IGNQI 677
IG +I
Sbjct: 393 IGQEI 397
Score = 113 (44.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 190 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 225
>UNIPROTKB|Q8X1U8 [details] [associations]
symbol:UPR1 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT EMBL:AB077040 ProteinModelPortal:Q8X1U8
STRING:Q8X1U8 Uniprot:Q8X1U8
Length = 1926
Score = 143 (55.4 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 42/137 (30%), Positives = 65/137 (47%)
Query: 552 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGC 611
Y H + +L + +++E+R VK+ MKQ + + RQ ALKL AN YG
Sbjct: 1299 YTKPH-IRKSLLAKMLTEILETRIMVKSGMKQDKDDRAIQQLLNNRQLALKLLANVTYGY 1357
Query: 612 LGFPNS-RFFAQPLAALVTAKGREILLNTKSLVENL---NYEVIYGDTDSLMISCNVNDY 667
S R +A + GRE L + + ++ + +V+YGDTDSL +S
Sbjct: 1358 TSASFSGRMPCSEIADSIVQTGRETLERAIAFIHSVQKWDADVVYGDTDSLFVSLKGRTR 1417
Query: 668 DSVFKIGNQIKSECNKL 684
+ F+IG +I KL
Sbjct: 1418 EQAFEIGQEIADAVTKL 1434
Score = 108 (43.1 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML 541
LV+EP+ FY ++++DF SLYPS++ YN C++T R++
Sbjct: 1222 LVMEPQSAFYSSPLLVLDFQSLYPSVMIAYNYCYSTFLGRIV 1263
Score = 41 (19.5 bits), Expect = 2.0e-10, Sum P(3) = 2.0e-10
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 114 GQ-GVKHKYEFTADENVYEEVSEKEYTE 140
GQ G + K + E VYEE +++ + E
Sbjct: 540 GQPGPQRKLQSNPPERVYEEPNKRVHEE 567
>ZFIN|ZDB-GENE-050302-55 [details] [associations]
symbol:rev3l "REV3-like, catalytic subunit of DNA
polymerase zeta (yeast)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 ZFIN:ZDB-GENE-050302-55 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:CABZ01061477 EMBL:CABZ01061476
EMBL:CU570797 IPI:IPI00996886 Ensembl:ENSDART00000092264
ArrayExpress:E7FDC5 Bgee:E7FDC5 Uniprot:E7FDC5
Length = 2953
Score = 129 (50.5 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 39/124 (31%), Positives = 57/124 (45%)
Query: 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS 617
V G+LP +++++++R VK MK L D RQ LKL AN +G S
Sbjct: 2500 VRRGVLPRMLEEILKTRIMVKQSMKAYRNDKALSRLLDARQLGLKLIANVTFGYTSANFS 2559
Query: 618 -RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKI 673
R + + K RE L +V + V+YGDTDS+ + + FKI
Sbjct: 2560 GRMPCVEVGDSIVHKARETLERAIKMVNDTKKWGARVVYGDTDSMFVLLKGATKEQAFKI 2619
Query: 674 GNQI 677
GN+I
Sbjct: 2620 GNEI 2623
Score = 117 (46.2 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 491 RKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
+++AA LV+EP+ FY +I++DF SLYPSI+ YN C++T
Sbjct: 2407 QQRAAQCIPLVMEPESRFYSNSVIVLDFQSLYPSIVIAYNYCYST 2451
>UNIPROTKB|G4NL37 [details] [associations]
symbol:MGG_02986 "DNA polymerase" species:242507
"Magnaporthe oryzae 70-15" [GO:0009405 "pathogenesis" evidence=IMP]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0009405
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
EMBL:CM001237 GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 RefSeq:XP_003720713.1
EnsemblFungi:MGG_02986T0 GeneID:2682539 KEGG:mgr:MGG_02986
Uniprot:G4NL37
Length = 1782
Score = 141 (54.7 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 40/125 (32%), Positives = 61/125 (48%)
Query: 557 QVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPN 616
++ +L + +++E+R VK+ MKQ L + RQ ALKL AN YG
Sbjct: 1241 EIRKSLLAKMLTEILETRVMVKSGMKQDKDDKTLQQLLNNRQLALKLLANVTYGYTSASF 1300
Query: 617 S-RFFAQPLAALVTAKGREILLNTKSLVENL---NYEVIYGDTDSLMISCNVNDYDSVFK 672
S R +A + GRE L + + ++ EV+YGDTDSL I + F+
Sbjct: 1301 SGRLPCSEIADSIVQTGRETLERAIAFIHSVPRWGAEVVYGDTDSLFIHLKGRTKEQAFE 1360
Query: 673 IGNQI 677
IGN++
Sbjct: 1361 IGNEM 1365
Score = 110 (43.8 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRML 541
LV+EP+ FY+ ++++DF SLYPS++ YN C++T R++
Sbjct: 1160 LVMEPQSAFYNSPVLVLDFQSLYPSVMIAYNYCYSTFLGRIV 1201
Score = 37 (18.1 bits), Expect = 4.1e-10, Sum P(3) = 4.1e-10
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 9 PTTDNFSG--GVD----VFGDLIKLSI--DLIDYVGKYLVLSSIPGKGHAKILTAGV 57
PTT + +G G+D + G ++ I +LID + +LS +P IL G+
Sbjct: 448 PTTASINGLVGLDTSSLITGKRPEIPITQELIDAAIEEDLLSEVPAPLQTPILREGL 504
>UNIPROTKB|E1BPY8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9913 "Bos taurus"
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:DAAA02025892 EMBL:DAAA02025893
EMBL:DAAA02025894 EMBL:DAAA02025895 IPI:IPI00923965
Ensembl:ENSBTAT00000060948 Uniprot:E1BPY8
Length = 3133
Score = 127 (49.8 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 40/125 (32%), Positives = 57/125 (45%)
Query: 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFP 615
V G+LP +++++++R VK MK L D RQ LKL AN +G F
Sbjct: 2684 VRKGVLPRMLEEILKTRLMVKRSMKAYKQDRVLSRMLDARQLGLKLIANVTFGYTAANF- 2742
Query: 616 NSRFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFK 672
+ R + + K RE L LV + V+YGDTDSL + + FK
Sbjct: 2743 SGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSLFVLLKGATKEQSFK 2802
Query: 673 IGNQI 677
IG +I
Sbjct: 2803 IGQEI 2807
Score = 113 (44.8 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2600 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2635
Score = 52 (23.4 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 23/120 (19%), Positives = 53/120 (44%)
Query: 26 KLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWAGAEVILTRF-LDLWVGARGAEFDWK 84
K+S L + KY++++ G+ + + + +VILT ++L+ + W
Sbjct: 967 KMSKKLPPVIIKYIIINRFRGRKNMLVKLGKIDSKEKQVILTEEKMELYKKLAPLKDFWP 1026
Query: 85 YIQNSLDSNICLIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVS-EKEYTERVL 143
+ +S + + T K + +K K + + + T+ EN+ +S K+ + +L
Sbjct: 1027 KVPDSPATKYPIYPLTPKKSHRRKSKHKSAKKKTGRQQRTSSENIRRTLSFRKKRSHAIL 1086
>UNIPROTKB|O60673 [details] [associations]
symbol:REV3L "DNA polymerase zeta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006261 "DNA-dependent DNA
replication" evidence=TAS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0051539 GO:GO:0006261
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 EMBL:AF058701 EMBL:AF071798 EMBL:AF157476
EMBL:AF179428 EMBL:AF179429 EMBL:AF078695 EMBL:AY684169
EMBL:AL080317 EMBL:AL136310 EMBL:AL512325 EMBL:AF035537
IPI:IPI00248651 IPI:IPI00745230 RefSeq:NP_002903.3
UniGene:Hs.232021 PDB:3ABD PDB:3ABE PDB:3VU7 PDBsum:3ABD
PDBsum:3ABE PDBsum:3VU7 ProteinModelPortal:O60673 SMR:O60673
IntAct:O60673 STRING:O60673 PhosphoSite:O60673 PaxDb:O60673
PRIDE:O60673 Ensembl:ENST00000358835 Ensembl:ENST00000368802
Ensembl:ENST00000368805 Ensembl:ENST00000435970 GeneID:5980
KEGG:hsa:5980 UCSC:uc003pux.4 CTD:5980 GeneCards:GC06M111665
H-InvDB:HIX0017582 HGNC:HGNC:9968 MIM:602776 neXtProt:NX_O60673
PharmGKB:PA34337 HOGENOM:HOG000112263 HOVERGEN:HBG000426
InParanoid:O60673 KO:K02350 OMA:DGTADEN OrthoDB:EOG4NVZJD
PhylomeDB:O60673 ChiTaRS:REV3L EvolutionaryTrace:O60673
GenomeRNAi:5980 NextBio:23277 ArrayExpress:O60673 Bgee:O60673
CleanEx:HS_REV3L Genevestigator:O60673 GermOnline:ENSG00000009413
GO:GO:0016035 Uniprot:O60673
Length = 3130
Score = 124 (48.7 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 39/124 (31%), Positives = 56/124 (45%)
Query: 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS 617
V G+LP +++++++R VK MK L D RQ LKL AN +G S
Sbjct: 2681 VRKGVLPRMLEEILKTRFMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTSANFS 2740
Query: 618 -RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKI 673
R + + K RE L LV + V+YGDTDS+ + + FKI
Sbjct: 2741 GRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFKI 2800
Query: 674 GNQI 677
G +I
Sbjct: 2801 GQEI 2804
Score = 113 (44.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2597 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2632
Score = 53 (23.7 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 24/120 (20%), Positives = 53/120 (44%)
Query: 26 KLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWAGAEVILTRF-LDLWVGARGAEFDWK 84
K+S L + KY++++ G+ + + + +VILT ++L+ + W
Sbjct: 966 KMSKKLPPVIIKYIIINRFRGRKNMLVKLGKIDSKEKQVILTEEKMELYKKLAPLKDFWP 1025
Query: 85 YIQNSLDSNICLIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVS-EKEYTERVL 143
+ +S + + T K + +K K + K + T +EN+ +S K+ + +L
Sbjct: 1026 KVPDSPATKYPIYPLTPKKSHRRKSKHKSAKKKTGKQQRTNNENIKRTLSFRKKRSHAIL 1085
>MGI|MGI:1337131 [details] [associations]
symbol:Rev3l "REV3-like, catalytic subunit of DNA polymerase
zeta RAD54 like (S. cerevisiae)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016035 "zeta DNA polymerase
complex" evidence=ISO;IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AF083464 MGI:MGI:1337131
GO:GO:0005634 GO:GO:0005694 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
HOGENOM:HOG000112263 HOVERGEN:HBG000426 KO:K02350 OMA:DGTADEN
ChiTaRS:REV3L GO:GO:0016035 EMBL:AB031049 EMBL:AC118733
EMBL:AC119943 EMBL:D78644 IPI:IPI00378205 PIR:T17202
RefSeq:NP_035394.2 UniGene:Mm.439723 PDB:4FJO PDBsum:4FJO
ProteinModelPortal:Q61493 SMR:Q61493 STRING:Q61493
PhosphoSite:Q61493 PaxDb:Q61493 PRIDE:Q61493
Ensembl:ENSMUST00000019986 Ensembl:ENSMUST00000164763 GeneID:19714
KEGG:mmu:19714 UCSC:uc007ewc.1 GeneTree:ENSGT00550000074640
InParanoid:Q61493 NextBio:297104 Bgee:Q61493 Genevestigator:Q61493
GermOnline:ENSMUSG00000019841 Uniprot:Q61493
Length = 3122
Score = 122 (48.0 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 38/125 (30%), Positives = 57/125 (45%)
Query: 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFP 615
V G+LP +++++++R VK MK L + RQ LKL AN +G F
Sbjct: 2673 VRKGVLPRMLEEILKTRLMVKQSMKSYKQDRALSRMLNARQLGLKLIANVTFGYTAANF- 2731
Query: 616 NSRFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFK 672
+ R + + K RE L LV + V+YGDTDS+ + + FK
Sbjct: 2732 SGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFK 2791
Query: 673 IGNQI 677
IG +I
Sbjct: 2792 IGQEI 2796
Score = 113 (44.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2589 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2624
Score = 55 (24.4 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 26 KLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWAGAEVILTRF-LDLWVGARGAEFDWK 84
K+S L + KY++++ G+ + + + +VILT ++L+ + W
Sbjct: 965 KMSKKLPPVIIKYIIINRFRGRKNMLVKLGKIDSKEKQVILTEEKMELYKKLAPLKDFWP 1024
Query: 85 YIQNSLDSNICLIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVS-EKEYTERVL 143
+ +S + + T K + +K K + K T EN+ +S K+ T VL
Sbjct: 1025 KVPDSPATKYPIYPLTPKKSHRRKSKHKSAKKKPGKQHRTNSENIKRTLSFRKKRTHAVL 1084
>UNIPROTKB|F1P7E8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
Ensembl:ENSCAFT00000006343 Uniprot:F1P7E8
Length = 3058
Score = 126 (49.4 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 39/125 (31%), Positives = 57/125 (45%)
Query: 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFP 615
V G+LP +++++++R VK MK L D RQ LKL AN +G F
Sbjct: 2609 VRKGVLPRMLEEILKTRLMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTAANF- 2667
Query: 616 NSRFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFK 672
+ R + + K RE L LV + V+YGDTDS+ + + FK
Sbjct: 2668 SGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFK 2727
Query: 673 IGNQI 677
IG +I
Sbjct: 2728 IGQEI 2732
Score = 113 (44.8 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2525 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2560
Score = 50 (22.7 bits), Expect = 2.0e-09, Sum P(3) = 2.0e-09
Identities = 22/110 (20%), Positives = 47/110 (42%)
Query: 26 KLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWAGAEVILTRF-LDLWVGARGAEFDWK 84
K+S L + KY++++ G+ + + + +VILT ++L+ + W
Sbjct: 887 KMSKKLPPVIIKYIIINRFRGRKNMLVKLGKIDSKEKQVILTEEKMELYKKLAPLKDFWP 946
Query: 85 YIQNSLDSNICLIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVS 134
+ +S + + T K + +K K + K + T EN+ +S
Sbjct: 947 KVPDSPATKYPIYPLTPKKSHRRKSKHKSAKKKTGKQQRTNSENIKRTLS 996
>UNIPROTKB|F1P7D5 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 CTD:5980 KO:K02350 OMA:DGTADEN GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
RefSeq:XP_539084.3 Ensembl:ENSCAFT00000006350 GeneID:481963
KEGG:cfa:481963 Uniprot:F1P7D5
Length = 3136
Score = 126 (49.4 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 39/125 (31%), Positives = 57/125 (45%)
Query: 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYG--CLGFP 615
V G+LP +++++++R VK MK L D RQ LKL AN +G F
Sbjct: 2687 VRKGVLPRMLEEILKTRLMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFGYTAANF- 2745
Query: 616 NSRFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFK 672
+ R + + K RE L LV + V+YGDTDS+ + + FK
Sbjct: 2746 SGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFK 2805
Query: 673 IGNQI 677
IG +I
Sbjct: 2806 IGQEI 2810
Score = 113 (44.8 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2603 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2638
Score = 50 (22.7 bits), Expect = 2.1e-09, Sum P(3) = 2.1e-09
Identities = 22/110 (20%), Positives = 47/110 (42%)
Query: 26 KLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWAGAEVILTRF-LDLWVGARGAEFDWK 84
K+S L + KY++++ G+ + + + +VILT ++L+ + W
Sbjct: 965 KMSKKLPPVIIKYIIINRFRGRKNMLVKLGKIDSKEKQVILTEEKMELYKKLAPLKDFWP 1024
Query: 85 YIQNSLDSNICLIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVS 134
+ +S + + T K + +K K + K + T EN+ +S
Sbjct: 1025 KVPDSPATKYPIYPLTPKKSHRRKSKHKSAKKKTGKQQRTNSENIKRTLS 1074
>UNIPROTKB|F1LMP6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 IPI:IPI00361212
Ensembl:ENSRNOT00000000725 ArrayExpress:F1LMP6 Uniprot:F1LMP6
Length = 3118
Score = 119 (46.9 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 38/124 (30%), Positives = 56/124 (45%)
Query: 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS 617
V G+LP +++++++R VK MK L + RQ LKL AN +G S
Sbjct: 2669 VRKGVLPRMLEEILKTRFMVKQSMKAYRQDRALSRMLNARQLGLKLIANVTFGYTSANFS 2728
Query: 618 -RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKI 673
R + + K RE L LV + V+YGDTDS+ + + FKI
Sbjct: 2729 GRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFKI 2788
Query: 674 GNQI 677
G +I
Sbjct: 2789 GQEI 2792
Score = 113 (44.8 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2585 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2620
Score = 53 (23.7 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 26 KLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWAGAEVILTRF-LDLWVGARGAEFDWK 84
K+S L + KY++++ G+ + + + +VILT ++L+ + W
Sbjct: 965 KMSKKLPPVIIKYIIINRFRGRKNMLVKLGKIDSKEKQVILTEEKMELYKKLAPLKDFWP 1024
Query: 85 YIQNSLDSNICLIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVS-EKEYTERVL 143
+ +S + + T K + +K K + K + EN+ +S K+ T VL
Sbjct: 1025 KVPDSPATKYPIYPLTPKKSHRRKSKHKSAKRKPGKQHRASSENIKRTLSFRKKRTHAVL 1084
Score = 49 (22.3 bits), Expect = 3.6e-09, Sum P(4) = 3.6e-09
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 314 SEYLEVRYSAKCPALPSDLSGDTFSHVFGT 343
S +LE R S + P PS GD+ S V+ +
Sbjct: 1296 SSFLESRKSVQFPTFPSS-RGDSRSSVYSS 1324
>UNIPROTKB|F1M8G6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
IPI:IPI00778278 RefSeq:NP_001077435.1 UniGene:Rn.8189
Ensembl:ENSRNOT00000057227 GeneID:309812 KEGG:rno:309812
NextBio:661358 ArrayExpress:F1M8G6 Uniprot:F1M8G6
Length = 3132
Score = 119 (46.9 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 38/124 (30%), Positives = 56/124 (45%)
Query: 558 VDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNS 617
V G+LP +++++++R VK MK L + RQ LKL AN +G S
Sbjct: 2683 VRKGVLPRMLEEILKTRFMVKQSMKAYRQDRALSRMLNARQLGLKLIANVTFGYTSANFS 2742
Query: 618 -RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDSVFKI 673
R + + K RE L LV + V+YGDTDS+ + + FKI
Sbjct: 2743 GRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFKI 2802
Query: 674 GNQI 677
G +I
Sbjct: 2803 GQEI 2806
Score = 113 (44.8 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 2599 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 2634
Score = 53 (23.7 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 25/120 (20%), Positives = 51/120 (42%)
Query: 26 KLSIDLIDYVGKYLVLSSIPGKGHAKILTAGVGWAGAEVILTRF-LDLWVGARGAEFDWK 84
K+S L + KY++++ G+ + + + +VILT ++L+ + W
Sbjct: 965 KMSKKLPPVIIKYIIINRFRGRKNMLVKLGKIDSKEKQVILTEEKMELYKKLAPLKDFWP 1024
Query: 85 YIQNSLDSNICLIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVS-EKEYTERVL 143
+ +S + + T K + +K K + K + EN+ +S K+ T VL
Sbjct: 1025 KVPDSPATKYPIYPLTPKKSHRRKSKHKSAKRKPGKQHRASSENIKRTLSFRKKRTHAVL 1084
Score = 49 (22.3 bits), Expect = 3.7e-09, Sum P(4) = 3.7e-09
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 314 SEYLEVRYSAKCPALPSDLSGDTFSHVFGT 343
S +LE R S + P PS GD+ S V+ +
Sbjct: 1296 SSFLESRKSVQFPTFPSS-RGDSRSSVYSS 1324
>ASPGD|ASPL0000070569 [details] [associations]
symbol:uvsI species:162425 "Emericella nidulans"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISA] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=ISA;IMP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0070987 "error-free
translesion synthesis" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0003887
EMBL:AACD01000081 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 HOGENOM:HOG000194392
RefSeq:XP_662393.1 ProteinModelPortal:G5EB69
EnsemblFungi:CADANIAT00005633 GeneID:2872590 KEGG:ani:AN4789.2
OMA:INIWRAM Uniprot:G5EB69
Length = 1681
Score = 131 (51.2 bits), Expect = 4.0e-09, Sum P(4) = 4.0e-09
Identities = 42/125 (33%), Positives = 56/125 (44%)
Query: 557 QVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPN 616
+V +L + +++E+R VK MK L + RQ ALKL AN YG
Sbjct: 1212 EVRKSLLAKMLTEILETRVMVKTGMKVDKDDRALQRLLNNRQLALKLIANVTYGYTSASF 1271
Query: 617 S-RFFAQPLAALVTAKGREILLNTKSL---VENLNYEVIYGDTDSLMISCNVNDYDSVFK 672
S R +A + GRE L + VE EV+YGDTDSL + D F
Sbjct: 1272 SGRMPCSEIADSIVQSGRETLEKAIAFIHSVERWGAEVVYGDTDSLFVYLKGRTRDQAFD 1331
Query: 673 IGNQI 677
IG +I
Sbjct: 1332 IGEEI 1336
Score = 108 (43.1 bits), Expect = 4.0e-09, Sum P(4) = 4.0e-09
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
LV+EP+ FY +I++DF SLYPSI+ YN C++T
Sbjct: 1131 LVMEPQSDFYTSPLIVLDFQSLYPSIMIAYNYCYST 1166
Score = 42 (19.8 bits), Expect = 4.0e-09, Sum P(4) = 4.0e-09
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 725 EIKGVDVVRRDWS----QLASEAGKFV-----ISQILDE-QSYTDYSLDDRL--QNI-HE 771
+ KG++ VRRD + ++ +A K + +SQ+ QS + R+ Q+
Sbjct: 1383 DAKGIETVRRDGTPAEQKIEEKALKLLFRTADLSQVKSYFQSQCTKIMQGRVSVQDFCFA 1442
Query: 772 HMKKIRTDLDNGFVPLTLLEITKQLTKAP 800
K+ T +NG +P L TK++ + P
Sbjct: 1443 RAVKLGTYSENGTLPAGALISTKKMLEDP 1471
Score = 41 (19.5 bits), Expect = 4.0e-09, Sum P(4) = 4.0e-09
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 412 HSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKS 464
H Y+ + MC+ N+ A CG R+ + + + L H +H++S
Sbjct: 165 HLQYVPQWMCDYNLFGCAFM---KCGKAKFRSPIPEYLDLPD--LSHRWHDRS 212
Score = 39 (18.8 bits), Expect = 6.4e-09, Sum P(4) = 6.4e-09
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 116 GVKHKYEFTADENVYEEVSEKEYTERVLKRQE 147
G + K A E+ EKEY +VL + E
Sbjct: 780 GEQQK-SLAATTKTEEQYEEKEYRGKVLSQIE 810
>TAIR|locus:2015393 [details] [associations]
symbol:AT1G47640 "AT1G47640" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005794 EMBL:AC007519
eggNOG:NOG241002 HOGENOM:HOG000005667 InterPro:IPR019164
PANTHER:PTHR12869 Pfam:PF09767 EMBL:AY052722 EMBL:BT004521
EMBL:AK227286 IPI:IPI00542325 PIR:D96517 RefSeq:NP_564509.1
UniGene:At.11494 PaxDb:Q9SX96 PRIDE:Q9SX96
EnsemblPlants:AT1G47640.1 GeneID:841173 KEGG:ath:AT1G47640
TAIR:At1g47640 InParanoid:Q9SX96 OMA:LEFTWDY PhylomeDB:Q9SX96
ProtClustDB:CLSN2688526 Genevestigator:Q9SX96 Uniprot:Q9SX96
Length = 228
Score = 157 (60.3 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 39/116 (33%), Positives = 60/116 (51%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLSSIPGKG---HAKILTAGV 57
++ LATF+ ++ + D + + +K I ID G Y L+ + + + K G+
Sbjct: 50 LVCLATFLQVSE--TEVFDPYQEALKAMIGFIDVAGLYYALAQLTHRNISQNHKFQAVGL 107
Query: 58 GWAGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLIDKTNKFAAFQKLKDLK 113
GWA A+ +L R LWVGARG EF W Y+ L++N L+ T AA L L+
Sbjct: 108 GWAFADSVLHRLAPLWVGARGLEFTWDYVLQGLEANANLVF-TISLAALGSLMWLR 162
>UNIPROTKB|Q75F27 [details] [associations]
symbol:AGOS_AAL099C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE016814
GenomeReviews:AE016814_GR GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT RefSeq:NP_982443.2 STRING:Q75F27
EnsemblFungi:AAS50267 GeneID:4618518 KEGG:ago:AGOS_AAL099C
Uniprot:Q75F27
Length = 1464
Score = 121 (47.7 bits), Expect = 8.5e-09, Sum P(3) = 8.5e-09
Identities = 40/128 (31%), Positives = 57/128 (44%)
Query: 555 EHQVDTGILPSEIKKLVESRRQVK-ALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLG 613
+ + IL + ++++R +K + N S LL D RQ ALKL AN YG
Sbjct: 997 KQNIRKSILAKMLSDILDTRVLLKRTISDMHNGSKRLLSTLDNRQLALKLLANVTYGYAS 1056
Query: 614 FPNS-RFFAQPLAALVTAKGREILLNTKSLVENLNY---EVIYGDTDSLMISCNVNDYDS 669
S R +A + GRE L ++E + V+YGDTDSL + +
Sbjct: 1057 ASYSGRMPCSDIADSIVHTGRETLRAAIQMIEKEDKWGARVVYGDTDSLFVHLPGKSREQ 1116
Query: 670 VFKIGNQI 677
FKIG I
Sbjct: 1117 AFKIGAAI 1124
Score = 115 (45.5 bits), Expect = 8.5e-09, Sum P(3) = 8.5e-09
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
L+LEP FY ++++DF SLYPSII YN C+TTI
Sbjct: 917 LILEPDPTFYTSPVLVLDFQSLYPSIIIAYNYCYTTI 953
Score = 37 (18.1 bits), Expect = 8.5e-09, Sum P(3) = 8.5e-09
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 222 DIYKQPGTVYLFGKVFVKENNS 243
D Y Q V+ F K F++ +N+
Sbjct: 247 DEYHQSDAVHTFLKRFLRPDNT 268
>DICTYBASE|DDB_G0293704 [details] [associations]
symbol:DDB_G0293704 "seven transmembrane domain
protein" species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0016021 "integral to membrane" evidence=IEA]
dictyBase:DDB_G0293704 GO:GO:0016021 EMBL:AAFI02000218
eggNOG:NOG241002 InterPro:IPR019164 PANTHER:PTHR12869 Pfam:PF09767
RefSeq:XP_629003.1 EnsemblProtists:DDB0233389 GeneID:8629287
KEGG:ddi:DDB_G0293704 InParanoid:Q54BM6 OMA:SISHIHF Uniprot:Q54BM6
Length = 235
Score = 142 (55.0 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 32/101 (31%), Positives = 58/101 (57%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVL--SSIPGKGHAKILTAGVG 58
MLI+ATF+P+ + S G+ + ++IK+ ++ID LVL + G +IL G+G
Sbjct: 50 MLIIATFLPSFNTTSIGI--YPEIIKIICNVIDLFSMSLVLKFAEFSGSKDYRILGIGIG 107
Query: 59 WAGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLIDK 99
W+ + I+++ + L +G FD+ Y +S++SN I +
Sbjct: 108 WSFSHAIMSQLIPLLMGTLSISFDFSYYLDSIESNFIAIQQ 148
>UNIPROTKB|A8IZI8 [details] [associations]
symbol:POLZ1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:DS496129 RefSeq:XP_001694423.1 STRING:A8IZI8
EnsemblPlants:EDP02418 GeneID:5720008 KEGG:cre:CHLREDRAFT_117843
ProtClustDB:CLSN2703070 BioCyc:CHLAMY:CHLREDRAFT_117843-MONOMER
Uniprot:A8IZI8
Length = 729
Score = 159 (61.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 43/127 (33%), Positives = 66/127 (51%)
Query: 557 QVDTGILPSEIKKLVESRRQVKALMKQ-PNLSSDLLMQYDIRQKALKLTANSMYG--CLG 613
QV G+LP +++++++R +K MK+ P LL + RQ LK+ AN YG G
Sbjct: 302 QVRPGVLPRMLREILDTRVMIKGAMKKVPPEDKVLLRVLNARQFGLKMIANVSYGYTAAG 361
Query: 614 FPNSRFFAQPLAALVTAKGREILLNTKSLVEN---LNYEVIYGDTDSLMISCNVNDYDSV 670
F FA+ LA + GR+ L N ++VE+ V+YGDTDS+ +
Sbjct: 362 FSGRMPFAE-LADAIVQSGRQTLENAIAMVESHPEWRARVVYGDTDSMFVLLQGRSRKEA 420
Query: 671 FKIGNQI 677
F+IG +I
Sbjct: 421 FRIGAEI 427
Score = 139 (54.0 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 53/176 (30%), Positives = 81/176 (46%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------------PVRM--LQDS- 544
LV+EP+ Y ++++DF SLYPS + YN+C++T PVR+ Q S
Sbjct: 217 LVMEPESRMYASPVVVLDFQSLYPSQVIAYNLCYSTCVGRPMHARAGGTPVRLGVTQYSY 276
Query: 545 DITTLCEYLPEH-------------QVDTGILPSEIKKLVESRRQVKALMKQ-PNLSSDL 590
PE QV G+LP +++++++R +K MK+ P L
Sbjct: 277 PAPAAGTATPEDLVISPNGVAYVSPQVRPGVLPRMLREILDTRVMIKGAMKKVPPEDKVL 336
Query: 591 LMQYDIRQKALKLTANSMYGCLGFPNS-RFFAQPLAALVTAKGREILLNTKSLVEN 645
L + RQ LK+ AN YG S R LA + GR+ L N ++VE+
Sbjct: 337 LRVLNARQFGLKMIANVSYGYTAAGFSGRMPFAELADAIVQSGRQTLENAIAMVES 392
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 725 EIKGVDVVRRD 735
+ KG++ VRRD
Sbjct: 474 DAKGIETVRRD 484
>DICTYBASE|DDB_G0271608 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016035 "zeta
DNA polymerase complex" evidence=ISS;IBA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0271608 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GenomeReviews:CM000151_GR EMBL:AAFI02000006 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GO:GO:0016035 RefSeq:XP_645553.1 ProteinModelPortal:Q55AZ3
EnsemblProtists:DDB0232271 GeneID:8618010 KEGG:ddi:DDB_G0271608
InParanoid:Q55AZ3 OMA:TTCELEV Uniprot:Q55AZ3
Length = 2701
Score = 119 (46.9 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 36/135 (26%), Positives = 63/135 (46%)
Query: 555 EHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY-DIRQKALKLTANSMYGCLG 613
+ + TG+ P +++++++R VK MK+ + + + RQ LK+ AN +G
Sbjct: 2188 DKSIRTGLFPKLLQEVLDTRIMVKRAMKKIDKGDKKMFNILNARQLGLKMMANVAFGYTA 2247
Query: 614 FPNS-RFFAQPLAALVTAKGREILLNTKSLVENL---NYEVIYGDTDSLMISCNVNDYDS 669
S R + + RE L +VE+ N +V+YGDTDSL + +
Sbjct: 2248 ATYSGRMPCIEIGDSIVQTARETLEAAIKIVESSKEWNAKVVYGDTDSLFVLLPGVSREK 2307
Query: 670 VFKIGNQIKSECNKL 684
F+IG I ++ L
Sbjct: 2308 AFEIGQNIANKVTSL 2322
Score = 95 (38.5 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
LV++P Y+ ++++DF SLYPSI+ YN C++T
Sbjct: 2039 LVMDPITRLYNSPVVVLDFQSLYPSIMIAYNYCYST 2074
Score = 41 (19.5 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 37/173 (21%), Positives = 67/173 (38%)
Query: 89 SLDSNI-CLIDKT-NKFAAF--QKLKDLKGQGVKHKYEFTADENVYE--EVSEKEYTERV 142
++D+N C +KT NK +K K+ + + K K + A +N ++ E+ KE E+
Sbjct: 1625 NMDNNHGC--EKTKNKLIVTKNEKEKEKEKEKEKEKEKAKAKDNDFKFNEIKRKENYEQY 1682
Query: 143 LKRQEXXXXXXXXXXXYVED-GREIFDDDIEDVPQXXXXXXXXXXXXNIQNPNAKDDSLP 201
YV D ++ + N+ NPN + DS+
Sbjct: 1683 FSEFSQISQHTPSPIKYVRDFSKKRLQSNQNQNLTILSVEIHCNSRDNL-NPNPEFDSIQ 1741
Query: 202 ----LATDHENKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVI 250
D ++ ++ D ++DI G + + + ENNS+ C I
Sbjct: 1742 SIIYCIRDEQSIEIEG----DQYQDI---KGILMVNDGHYENENNSYGLNCFI 1787
Score = 40 (19.1 bits), Expect = 4.5e-06, Sum P(3) = 4.5e-06
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 340 VFGTKTSFLENLLLERKIKGPSWLEFPEAE---KFPSRIS-WCKYEVQCNQM 387
VF + F+ + L+ + G S +EF A P ++ W E +Q+
Sbjct: 199 VFESHIPFILQVFLDYNLSGMSNIEFTNAYFRLPLPEKLKKWGTKEYDLSQL 250
Score = 37 (18.1 bits), Expect = 9.0e-06, Sum P(3) = 9.0e-06
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 280 SEFDQIATQYKILD 293
+ FDQ+ + KILD
Sbjct: 491 TSFDQLDSNIKILD 504
>UNIPROTKB|Q7RF47 [details] [associations]
symbol:PY04863 "Uncharacterized protein" species:73239
"Plasmodium yoelii yoelii" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] InterPro:IPR012337 GO:GO:0005634
GO:GO:0005694 GO:GO:0003676 SUPFAM:SSF53098 GO:GO:0003887
eggNOG:COG0417 GO:GO:0019985 GO:GO:0016035 EMBL:AABL01001504
RefSeq:XP_725232.1 GeneID:3790571 KEGG:pyo:PY04863
EuPathDB:PlasmoDB:PY04863 Uniprot:Q7RF47
Length = 665
Score = 140 (54.3 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 43/172 (25%), Positives = 81/172 (47%)
Query: 222 DIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIYLLPRSEHLKTKEPVSIA---QV 278
DI K ++ LFG+ K + S + ++++DR Y L K+ + I +
Sbjct: 356 DICKHKNSIILFGRTLTKLKR-YKSISIYIEDMDRCYYFLLNKNKKYVKDGIEITYGHEK 414
Query: 279 YSEF---DQIATQYKILDFKSRKIEK-KYAF--NLPGVPDLSE-YLEVRYSAKCPALPSD 331
Y F D ++ KI ++ + K+ K K F NL + E Y +V YS +
Sbjct: 415 YKNFIMLDFVSEFKKIREYHNIKMAKYKIVFRKNLNLSSNNEELYAKVLYSYNYDNISEQ 474
Query: 332 LS-GDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAEK-FPSRISWCKYE 381
S GDT+S + +EN ++++ +K P W++ + + F + I++C ++
Sbjct: 475 FSKGDTYSSFYCCNDDIVENFIIKKNMKMPCWVKIKDLKNNFSNNIAYCYFD 526
>UNIPROTKB|I3LER4 [details] [associations]
symbol:I3LER4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR012337 Pfam:PF00136
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 GeneTree:ENSGT00550000074640 EMBL:CU915528
Ensembl:ENSSSCT00000026918 Uniprot:I3LER4
Length = 127
Score = 113 (44.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L++EP+ FY ++++DF SLYPSI+ YN CF+T
Sbjct: 82 LIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFST 117
>UNIPROTKB|A8IXV5 [details] [associations]
symbol:CHLREDRAFT_172920 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF00136 PRINTS:PR00106 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 GO:GO:0006287 GO:GO:0043625 EMBL:DS496126
RefSeq:XP_001693242.1 EnsemblPlants:EDP03268 GeneID:5718970
KEGG:cre:CHLREDRAFT_172920 ProtClustDB:CLSN2921640 Uniprot:A8IXV5
Length = 350
Score = 129 (50.5 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 46/135 (34%), Positives = 67/135 (49%)
Query: 507 GFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSE 566
G Y + +DF SLYPS+ + +N+C+TT+ V P+ V GILP+
Sbjct: 177 GLYRGPVATLDFASLYPSLFRAHNLCYTTL-VH--------------PD-DVRLGILPTI 220
Query: 567 IKKLVESRRQVKALMKQ-----PNLSSDL------LMQYDIRQKALKLTANSMYGCLGFP 615
+ L+ +R +A +K ++DL M D RQKALK+TAN++YG G
Sbjct: 221 LAALMTARAATRAAIKALGGGGSGAATDLHAAAAAAMVLDGRQKALKVTANALYGFTGGW 280
Query: 616 NSRFFAQPLAALVTA 630
R AALV+A
Sbjct: 281 KRRRLPAAAAALVSA 295
>GENEDB_PFALCIPARUM|PF10_0362 [details] [associations]
symbol:PF10_0362 "DNA polymerase zeta catalytic
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0016035
"zeta DNA polymerase complex" evidence=ISS] InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR008973 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562
SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 102 (41.0 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 39/154 (25%), Positives = 73/154 (47%)
Query: 538 VRMLQDSDITTLCE---YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
++ L+ DI Y+ +H+ GI P ++ ++++R +K M + +
Sbjct: 1317 IKNLKSEDIIITSNNTIYVKKHK-RKGICPLFLEDILKTRIMLKRCMGM--YEERVNKKL 1373
Query: 595 DIRQKALKLTANSMYGCLGFPNS-RFFAQPLAALVTAKGREILLNTKSLV-ENLNY-EVI 651
+ R LKL N G +G S R ++ + + GR LL + EN + +++
Sbjct: 1374 NERMGKLKLILNVATGYIGANFSGRMPCVDISESIISIGRNFLLFIIEYIKENYKFVKIL 1433
Query: 652 YGDTDSL-MISCNVNDYDSVFKIGNQIKSECNKL 684
YGDTDSL +++ +D S FK+ +I + N +
Sbjct: 1434 YGDTDSLFLLNETTDDIQSSFKLAYEILNSINNI 1467
Score = 89 (36.4 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L+L+PK +++ DF SLYPSI+ +NIC++T
Sbjct: 1089 LILQPKSSINFFPLLVFDFQSLYPSILIAFNICYST 1124
Score = 40 (19.1 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQE 147
D+ K ++ K+ + + K K E E E EK+ ER ++QE
Sbjct: 485 DEREKEKQDEREKEKQDEREKEKQEEREKEKQEEREKEKQ-EEREKEKQE 533
>UNIPROTKB|Q8IJ38 [details] [associations]
symbol:PF10_0362 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR008973 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562 SUPFAM:SSF53098
EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 102 (41.0 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 39/154 (25%), Positives = 73/154 (47%)
Query: 538 VRMLQDSDITTLCE---YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
++ L+ DI Y+ +H+ GI P ++ ++++R +K M + +
Sbjct: 1317 IKNLKSEDIIITSNNTIYVKKHK-RKGICPLFLEDILKTRIMLKRCMGM--YEERVNKKL 1373
Query: 595 DIRQKALKLTANSMYGCLGFPNS-RFFAQPLAALVTAKGREILLNTKSLV-ENLNY-EVI 651
+ R LKL N G +G S R ++ + + GR LL + EN + +++
Sbjct: 1374 NERMGKLKLILNVATGYIGANFSGRMPCVDISESIISIGRNFLLFIIEYIKENYKFVKIL 1433
Query: 652 YGDTDSL-MISCNVNDYDSVFKIGNQIKSECNKL 684
YGDTDSL +++ +D S FK+ +I + N +
Sbjct: 1434 YGDTDSLFLLNETTDDIQSSFKLAYEILNSINNI 1467
Score = 89 (36.4 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
L+L+PK +++ DF SLYPSI+ +NIC++T
Sbjct: 1089 LILQPKSSINFFPLLVFDFQSLYPSILIAFNICYST 1124
Score = 40 (19.1 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 98 DKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQE 147
D+ K ++ K+ + + K K E E E EK+ ER ++QE
Sbjct: 485 DEREKEKQDEREKEKQDEREKEKQEEREKEKQEEREKEKQ-EEREKEKQE 533
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1030 753 0.00090 121 3 11 22 0.39 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 101
No. of states in DFA: 618 (66 KB)
Total size of DFA: 379 KB (2187 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 62.31u 0.07s 62.38t Elapsed: 00:00:04
Total cpu time: 62.34u 0.08s 62.42t Elapsed: 00:00:04
Start: Thu Aug 15 13:24:29 2013 End: Thu Aug 15 13:24:33 2013
WARNINGS ISSUED: 1