RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy6283
(1030 letters)
>gnl|CDD|99915 cd05532, POLBc_alpha, DNA polymerase type-B alpha subfamily
catalytic domain. Three DNA-dependent DNA polymerases
type B (alpha, delta, and epsilon) have been identified
as essential for nuclear DNA replication in eukaryotes.
DNA polymerase (Pol) alpha is almost exclusively
required for the initiation of DNA replication and the
priming of Okazaki fragments during elongation. In most
organisms no specific repair role, other than check
point control, has been assigned to this enzyme. Pol
alpha contains both polymerase and exonuclease domains,
but lacks exonuclease activity suggesting that the
exonuclease domain may be for structural purposes only.
Length = 400
Score = 490 bits (1264), Expect = e-165
Identities = 187/313 (59%), Positives = 225/313 (71%), Gaps = 10/313 (3%)
Query: 489 KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITT 548
K +KKA Y+GGLVLEPKKG YDKFI+L+DFNSLYPSIIQEYNICFTT+ D D
Sbjct: 1 KKKKKAKYAGGLVLEPKKGLYDKFILLLDFNSLYPSIIQEYNICFTTVDRADPDDEDDEE 60
Query: 549 LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSM 608
LP + GILP I+KLVE RRQVK LMK D Q DIRQ ALKLTANSM
Sbjct: 61 PP--LPPSDQEKGILPRIIRKLVERRRQVKKLMKSEK-DPDKKAQLDIRQLALKLTANSM 117
Query: 609 YGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYD 668
YGCLGF SRF+A+PLAAL+T+KGREIL TK LVE +N EVIYGDTDS+MI+ DY+
Sbjct: 118 YGCLGFSYSRFYAKPLAALITSKGREILQKTKDLVEKMNLEVIYGDTDSIMINTGTTDYE 177
Query: 669 SVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKG 728
K+GN+IK E NK YK+LE+DIDGV+K +LLLKKKKYAAL + GK +E+KG
Sbjct: 178 EAKKLGNKIKKEVNKSYKKLEIDIDGVFKRLLLLKKKKYAALKVVDDDKGK--LKKEVKG 235
Query: 729 VDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLT 788
+D+VRRDW L+ E G +V+ QIL ++S +D ++NIHE+++KI DL NG +PL
Sbjct: 236 LDIVRRDWCPLSKEIGNYVLDQILSDKSR-----EDIVENIHEYLRKINEDLRNGKIPLE 290
Query: 789 LLEITKQLTKAPE 801
ITKQLTK PE
Sbjct: 291 KFIITKQLTKNPE 303
>gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2). All proteins in this
superfamily for which functions are known are DNA
polymerases.This family is based on the phylogenomic
analysis of JA Eisen (1999, Ph.D. Thesis, Stanford
University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1172
Score = 447 bits (1150), Expect = e-139
Identities = 241/427 (56%), Positives = 312/427 (73%), Gaps = 12/427 (2%)
Query: 402 IVEFIKFTMLHSSYIIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFH 461
+ ++ T + +I++IMCELNVLPLA+QITN+ GN++SRTLMGGRSERNEFLLLHAF+
Sbjct: 701 LTYLLEHTWKDAMFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFY 760
Query: 462 EKSYVLPDKQ-YGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNS 520
E +Y++PDKQ + K +K G+E E + K KKAAY+GGLVLEPK G YDK+++LMDFNS
Sbjct: 761 ENNYIVPDKQIFRKQQKLGDEDEEIDGYKKGKKAAYAGGLVLEPKVGLYDKYVLLMDFNS 820
Query: 521 LYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKAL 580
LYPSIIQE+NICFTT+ Q D L E LP+ +++ GILP E++KLVE R++VK L
Sbjct: 821 LYPSIIQEFNICFTTVQ----QKVDEDELPE-LPDSELEMGILPRELRKLVERRKEVKKL 875
Query: 581 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTK 640
MKQ +L+ DL +QYDIRQKALKLTANSMYGCLG+ SRF+A+PLAALVTAKGREIL +T+
Sbjct: 876 MKQ-DLNPDLRLQYDIRQKALKLTANSMYGCLGYSKSRFYAKPLAALVTAKGREILEHTR 934
Query: 641 SLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYML 700
LVE +N EVIYGDTDS+MI+ Y+ VFKIG + KSE NKLYK LELDIDGV+K +L
Sbjct: 935 QLVEEMNLEVIYGDTDSIMINTPGTKYEEVFKIGKEFKSEVNKLYKLLELDIDGVFKRLL 994
Query: 701 LLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
LLKKKKYAA+ + S+G QE+KG+D+VRRDWS LA E GK V+ IL ++
Sbjct: 995 LLKKKKYAAIKVEGDSDGNYTTKQEVKGLDIVRRDWSPLAKETGKKVLDTILSDK----- 1049
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRR 820
+++ ++ + E ++KI ++ NG VPL I KQLT+ P+ + + R
Sbjct: 1050 DVEEAVEEVQEVLEKIGKNVLNGEVPLEKFVINKQLTRDPKDYPDGASLPHVHVALRINA 1109
Query: 821 RRRRKKK 827
R RK K
Sbjct: 1110 RGGRKVK 1116
Score = 142 bits (358), Expect = 3e-34
Identities = 89/319 (27%), Positives = 130/319 (40%), Gaps = 51/319 (15%)
Query: 109 LKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYV----EDGR 164
L + + + E E E +D + D+
Sbjct: 175 LIPVPLKRAEFAGGDVQMEGDPELKLASFDIETYFHDGKDFFPGDENPADEEIMISTTPV 234
Query: 165 EIFDDDIEDVPQKKEKH------------------DKRKKNKNIQNPNAKDDSLPLATDH 206
D E P+ + + + + +D + + +
Sbjct: 235 IAKQWDYESEPEARVVTWKKPDKPTTGSYVESVSEEISMIKRFWDVIDQEDTDVEITVNG 294
Query: 207 EN-------KKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNSHSSCCVIVQNIDRKIY 259
+N + F+ DA+ED ++ G V LFG+ + H S CV V+ I+R ++
Sbjct: 295 DNFDLVYLADRQVFQFYWDAYEDPAEKLGVVLLFGR-----DVDHVSPCVQVKGINRDLF 349
Query: 260 LLPRSEHLK------TKEPVSIAQVYSEFD-QIATQYKILDFKSRKIEKKYAFNLPG--V 310
LPR + T+ +++ Y EF ++A YK F+++ I KKY F P
Sbjct: 350 FLPREGKIDFDLGKVTRRTINLPDYYLEFVSELALGYKKEKFRAKPIAKKYEFEAPDIDA 409
Query: 311 PDLSEYLEVRYS-----AKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEF 365
P SEYLEV Y A ALPSDL G TF HVFG+ T LE LL RKIKGP WL
Sbjct: 410 PYSSEYLEVTYELGKEFAPMEALPSDLKGQTFWHVFGSNTGNLERFLLLRKIKGPCWLAV 469
Query: 366 --PEAEKFPSRISWCKYEV 382
P+ ++P R SWCKYE
Sbjct: 470 KGPDELEYP-RRSWCKYEG 487
Score = 60.5 bits (146), Expect = 5e-09
Identities = 31/90 (34%), Positives = 44/90 (48%), Gaps = 7/90 (7%)
Query: 129 VYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGREIFDDDI------EDVPQKKEKHD 182
+YE+V E+EY++RV ++ DD D G+GYVEDGRE F D+ +D E
Sbjct: 8 IYEDVDEEEYSKRVQEKPIDDIFVKDDGEGYVEDGREFFPDEDDILDLDKDDGSAAEAKK 67
Query: 183 KRKKN-KNIQNPNAKDDSLPLATDHENKKV 211
K K+N K + PN + K
Sbjct: 68 KDKENHKKVTKPNNIKAVRIACAPKKKKDR 97
Score = 33.9 bits (77), Expect = 0.55
Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 25/147 (17%)
Query: 489 KGRKKAAYSGGLVLEP--KKGFYD--KFIILMDFN--SLYPSIIQEYNICFTTIPVRMLQ 542
R Y GG V P +KG ++++DF+ SL PSII+ + R
Sbjct: 478 PRRSWCKYEGGYVKPPNVEKGLDKTPPPLVVLDFSMKSLNPSIIRNEIVSIPDTLHREFA 537
Query: 543 DSDITTLCEYLPEH-----------------QVDTGILPSEIKKLVESRRQVKALMKQ-P 584
D H G PS ++ L R +K M +
Sbjct: 538 -LDKPPPEPPYDVHPCVGTRPKDCSFPLDLKGEFPGKKPSLVEDLATERALIKKFMAKVK 596
Query: 585 NLSSDLLMQYDIRQKALKLTANSMYGC 611
+ D ++ +D +Q+ALK+ AN +
Sbjct: 597 KIDPDEIVGHDYQQRALKVLANRINDL 623
>gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B. This region of DNA
polymerase B appears to consist of more than one
structural domain, possibly including elongation,
DNA-binding and dNTP binding activities.
Length = 458
Score = 315 bits (810), Expect = 1e-97
Identities = 131/403 (32%), Positives = 194/403 (48%), Gaps = 42/403 (10%)
Query: 447 GRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKK 506
G+ R LLL E++++LPDK ++ + KK Y G VLEPKK
Sbjct: 1 GQQIRVFSLLLREAKERNFILPDKFELRSLS---------RQVNIKKEGYQGATVLEPKK 51
Query: 507 GFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRMLQDSDITTLCEYLPEHQVDT---- 560
GFY+ ++++DF SLYPSIIQ +N+C+ T+ E L
Sbjct: 52 GFYNNPVLVLDFASLYPSIIQAHNLCYETLVDVDAEAPKLAAERNLEVLHIVVGSLRERF 111
Query: 561 -------GILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLG 613
GILP ++ L+ R++ K LMK+ +L D +Q ALK+TANS+YG G
Sbjct: 112 VKKGVRKGILPVLLRDLLAKRKEKKKLMKESKDPEELRTLLDKQQLALKVTANSVYGFTG 171
Query: 614 FPNSRFFAQPLAALVTAKGREILLNTKSLVENL---NYEVIYGDTDSLMISCNVNDYDSV 670
N R P+A VTA GRE++ TK VE L ++VIYGDTDS+ + D +
Sbjct: 172 AANGRLPCLPIAESVTAIGREMIEKTKRYVEELLNYGFKVIYGDTDSVFVKFPGVDIEEA 231
Query: 671 FKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKG 728
K+G ++ +K ++L+ + VYK +LL+ KK+YA L + IKG
Sbjct: 232 KKLGKELAKHVTSELFFKPIKLEFEKVYKPLLLISKKRYAGLKYDGKGD--------IKG 283
Query: 729 VDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQN-IHEHMKKIRTDLDNGFVPL 787
VD+VRRDW + E + V+ +L ++ L+ I E +K + L VPL
Sbjct: 284 VDLVRRDWCEFVKEVIRKVLDLLLKDK--DVEDAAPSLKIVIIEILKSLTDKLVQNKVPL 341
Query: 788 TLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEK 830
L ITK+L+K P K + R ++R +E
Sbjct: 342 EDLVITKELSKPPSEYK----KKNPPHVTVALRLKKRGNEEAP 380
>gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA
replication, recombination, and repair].
Length = 792
Score = 268 bits (688), Expect = 7e-77
Identities = 129/413 (31%), Positives = 204/413 (49%), Gaps = 37/413 (8%)
Query: 416 IIKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKN 475
+++I+ + +LPL I+++ V G L G R E LLL + ++P
Sbjct: 343 VLRILLKNELLPLLIELSRVSGLPLDDVTRAGSGARVEGLLLREAKRRGELIP------- 395
Query: 476 KKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTT 535
NK + ++ Y GGLVLEP+ G Y+ ++++DF+SLYPSII +YNI T
Sbjct: 396 ----------NKEERPERKKYKGGLVLEPEPGLYEN-VLVLDFSSLYPSIIIKYNISPDT 444
Query: 536 IPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYD 595
+ D + + + G LP +++L++ R ++K MK+ D
Sbjct: 445 LVEEDCSDDYSPPGVGHGFC-KREKGFLPEILEELLDRRDEIKKKMKKE-KDPSERKLLD 502
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDT 655
RQ ALK+ ANS YG LG+ NSRF+ A VTA GREIL TK L E + VIYGDT
Sbjct: 503 GRQLALKVLANSFYGYLGYSNSRFYCIECAESVTAFGREILRETKELAEEMGLRVIYGDT 562
Query: 656 DSLMISCNVNDYDSVFKIGNQIKSECN-KLYKQLELDIDGVYKYMLLL-KKKKYAALSIS 713
DSL ++ Y+ KIG ++ E N +L +EL+++ VYK LL KK+YA L
Sbjct: 563 DSLFVTLPGATYEEAIKIGEELVEEVNERLPSGIELEVEKVYKRFLLPTAKKRYAGLLE- 621
Query: 714 KLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHM 773
K+ E+KG++ VRRDW +L E + V+ +L + + ++++ E +
Sbjct: 622 --DGDKI----EVKGLETVRRDWPELVKEFQREVLEVLLSGRDVEEALA-KYVRDVIEKL 674
Query: 774 KKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRRRRRKK 826
+ ++ L I+K+LT+ K + ++ R R +
Sbjct: 675 RNGEVPIE-------KLVISKRLTRPLSEYKANKPHVVVAARLRKRGINVKPG 720
>gnl|CDD|99912 cd00145, POLBc, DNA polymerase type-B family catalytic domain.
DNA-directed DNA polymerases elongate DNA by adding
nucleotide triphosphate (dNTP) residues to the 5'-end of
the growing chain of DNA. DNA-directed DNA polymerases
are multifunctional with both synthetic (polymerase) and
degradative modes (exonucleases) and play roles in the
processes of DNA replication, repair, and recombination.
DNA-dependent DNA polymerases can be classified in six
main groups based upon their phylogenetic relationships
with E. coli polymerase I (class A), E. coli polymerase
II (class B), E. coli polymerase III (class C),
euryarchaeota polymerase II (class D), human polymerase
beta (class x), E. coli UmuC/DinB, and eukaryotic RAP
30/Xeroderma pigmentosum variant (class Y). Family B
DNA polymerases include E. coli DNA polymerase II, some
eubacterial phage DNA polymerases, nuclear replicative
DNA polymerases (alpha, delta, epsilon, and zeta), and
eukaryotic viral and plasmid-borne enzymes. DNA
polymerase is made up of distinct domains and
sub-domains. The polymerase domain of DNA polymerase
type B (Pol domain) is responsible for the
template-directed polymerization of dNTPs onto the
growing primer strand of duplex DNA that is usually
magnesium dependent. In general, the architecture of the
Pol domain has been likened to a right hand with
fingers, thumb, and palm sub-domains with a deep groove
to accommodate the nucleic acid substrate. There are a
few conserved motifs in the Pol domain of family B DNA
polymerases. The conserved aspartic acid residues in the
DTDS motifs of the palm sub-domain is crucial for
binding to divalent metal ion and is suggested to be
important for polymerase catalysis.
Length = 323
Score = 226 bits (578), Expect = 1e-66
Identities = 96/268 (35%), Positives = 141/268 (52%), Gaps = 6/268 (2%)
Query: 494 AAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYL 553
Y GG V +P G Y+ +I++DF SLYPSII YN+ TT+ + +
Sbjct: 1 EPYEGGYVFDPIPGLYE-NVIVLDFKSLYPSIIITYNLSPTTLVGNGEIAAPEDYIGVGF 59
Query: 554 PEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLG 613
+ G+LP +++L+ R + K MK L+ + + YD RQ+ALK+ ANS YG LG
Sbjct: 60 RSPKDRKGLLPRILEELLNFRDEAKKRMKAAKLAPEERVLYDNRQQALKVLANSFYGYLG 119
Query: 614 FPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN-DYDSVFK 672
RF+ +AA +T+ GREI+ +T +LVE VIYGDTDS+ +S + K
Sbjct: 120 AKFFRFYDPEVAASITSFGREIIQDTIALVEEHGARVIYGDTDSIFVSLPKMGTKEDAIK 179
Query: 673 IGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVV 732
G +I + LEL+ + VY L KKK+YA L I K G+ +IKG++
Sbjct: 180 EGREI-LQELADEHLLELEFEKVYLPFFLGKKKRYAGLDIWK---GQDEGKIDIKGLETR 235
Query: 733 RRDWSQLASEAGKFVISQILDEQSYTDY 760
RRD L + K V+ IL+E+ +
Sbjct: 236 RRDSPPLVKKFQKEVLELILEEERKVEA 263
>gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family. DNA polymerase
alpha, delta, epsilon and zeta chain (eukaryota), DNA
polymerases in archaea, DNA polymerase II in e. coli,
mitochondrial DNA polymerases and and virus DNA
polymerases.
Length = 474
Score = 227 bits (579), Expect = 6e-65
Identities = 110/267 (41%), Positives = 154/267 (57%), Gaps = 28/267 (10%)
Query: 417 IKIMCELNVLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNK 476
+K+ +LNV+PL I++ + G L RTL G R E LLL + +Y+LP K+
Sbjct: 215 LKLFNKLNVIPLIIELARIAGIPLRRTLYYGSQIRVESLLLREAKKNNYILPSKE----- 269
Query: 477 KEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI 536
+ ++ +KK Y GG VLEPKKGFYD ++++DFNSLYPSII +N+C++T+
Sbjct: 270 ---LYDFKGSEPDLKKKVKYEGGKVLEPKKGFYDNPVLVLDFNSLYPSIIIAHNLCYSTL 326
Query: 537 PVR-------MLQDSDITTLCEY-------LPEHQVDTGILPSEIKKLVESRRQVKALMK 582
L + +Y + + GILP +KKL++ R+++K LMK
Sbjct: 327 VGVGEVVIKGDLIIPEDLLTIKYEKGNKYRFVKKNIRKGILPKLLKKLLDKRKEIKKLMK 386
Query: 583 Q-PNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKS 641
+ + S +L D RQ ALKLTANS+YG LGF NSR +PLAA VTA GREIL TK
Sbjct: 387 KEKDESEELKKLLDSRQLALKLTANSVYGYLGFTNSRLPCKPLAASVTALGREILEKTKE 446
Query: 642 LVENLNY-----EVIYGDTDSLMISCN 663
L+E Y +VIYGDTDS+ ++
Sbjct: 447 LIEENGYPKPGFKVIYGDTDSIFVTKP 473
>gnl|CDD|235595 PRK05762, PRK05762, DNA polymerase II; Reviewed.
Length = 786
Score = 200 bits (511), Expect = 2e-53
Identities = 109/366 (29%), Positives = 164/366 (44%), Gaps = 77/366 (21%)
Query: 425 VLPLAIQITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGE 484
+LP ++ V G L R +GG E L L H YV P+ GE GE
Sbjct: 350 LLPFLLERATVTGLPLDR--VGGSVAAFEHLYLPRAHRAGYVAPNL--------GERPGE 399
Query: 485 ANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDS 544
A GG V++ K G YD ++L DF SLYPSII+ +NI + V L
Sbjct: 400 A----------SPGGYVMDSKPGLYDSVLVL-DFKSLYPSIIRTFNIDPDGL-VEGLAQP 447
Query: 545 DITTLCEYLPEHQV----------DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQY 594
E V + LP +++L E R + K M +P
Sbjct: 448 P---------EESVAGFLGARFSREKHFLPEIVERLWEGRDEAKREMNKP---------- 488
Query: 595 DIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGD 654
+A+K+ N+ YG LG RFF LA+ +T +G EI+ T+ L+E Y+VIYGD
Sbjct: 489 --LSQAIKIIMNAFYGVLGSSGCRFFDPRLASSITMRGHEIMKQTRELIEAQGYQVIYGD 546
Query: 655 TDSLMISCNV-NDYDSVFKIGNQIKSECNKLYKQ-----------LELDIDGVYK--YML 700
TDS + +D + KIG + E N+ +++ LEL+ + Y+ +M
Sbjct: 547 TDSTFVWLGGAHDEEDAAKIGRALVQEINQWWQEHLQQEFGLESALELEFEKHYRRFFMP 606
Query: 701 LLK------KKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDE 754
++ KK+YA L +G+++ KG++ VR DW+ LA E + + +I
Sbjct: 607 TIRGAEEGSKKRYAGLIQEGDGDGRIV----FKGLETVRTDWTPLAKEFQQELYERIFRG 662
Query: 755 QSYTDY 760
+ Y DY
Sbjct: 663 EPYVDY 668
>gnl|CDD|99916 cd05533, POLBc_delta, DNA polymerase type-B delta subfamily
catalytic domain. Three DNA-dependent DNA polymerases
type B (alpha, delta, and epsilon) have been identified
as essential for nuclear DNA replication in eukaryotes.
Presently, no direct data is available regarding the
strand specificity of DNA polymerase during DNA
replication in vivo. However, mutation analysis supports
the hypothesis that DNA polymerase delta is the enzyme
responsible for both elongation and maturation of
Okazaki fragments on the lagging strand.
Length = 393
Score = 176 bits (449), Expect = 3e-48
Identities = 103/321 (32%), Positives = 167/321 (52%), Gaps = 31/321 (9%)
Query: 496 YSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----PVRMLQDSDITTL-- 549
Y G V+EP KG+YD I +DF SLYPSI+ +N+C+TT+ + L D
Sbjct: 3 YEGATVIEPIKGYYDVPIATLDFASLYPSIMMAHNLCYTTLLNKNTAKKLPPEDYIKTPN 62
Query: 550 CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMY 609
+Y + V G+LP +++L+ +R++ K +K+ D RQ ALK++ANS+Y
Sbjct: 63 GDYFVKSSVRKGLLPEILEELLAARKRAKKDLKEET-DPFKKAVLDGRQLALKISANSVY 121
Query: 610 GCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVIYGDTDSLMI 660
G G + +++ VT+ GR+++ TK LVE + +VIYGDTDS+M+
Sbjct: 122 GFTGATVGKLPCLEISSSVTSFGRQMIEKTKKLVEEKYTKANGYSHDAKVIYGDTDSVMV 181
Query: 661 SCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISKLSN-G 718
V+D + K+G + +K + K ++L+ + VY LL+ KK+YA L +
Sbjct: 182 KFGVSDVEEAMKLGKEAAEYVSKKFIKPIKLEFEKVYFPYLLINKKRYAGLLWTNPDKHD 241
Query: 719 KMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRT 778
KM KG++ VRRD L + +++IL E+ ++ E +K + +
Sbjct: 242 KMDT----KGIETVRRDNCLLVQNVVETCLNKILIERD---------VEGAIEFVKGVIS 288
Query: 779 DLDNGFVPLTLLEITKQLTKA 799
DL + ++LL ITK LTK
Sbjct: 289 DLLQNKIDISLLVITKALTKT 309
>gnl|CDD|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic
domain. Archaeal proteins that are involved in DNA
replication are similar to those from eukaryotes. Some
members of the archaea also possess multiple family B
DNA polymerases (B1, B2 and B3). So far there is no
specific function(s) has been assigned for different
members of the archaea type B DNA polymerases.
Phylogenetic analyses of eubacterial, archaeal, and
eukaryotic family B DNA polymerases are support
independent gene duplications during the evolution of
archaeal and eukaryotic family B DNA polymerases.
Structural comparison of the thermostable DNA polymerase
type B to its mesostable homolog suggests several
adaptations to high temperature such as shorter loops,
disulfide bridges, and increasing electrostatic
interaction at subdomain interfaces.
Length = 371
Score = 172 bits (437), Expect = 6e-47
Identities = 110/309 (35%), Positives = 170/309 (55%), Gaps = 26/309 (8%)
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLP 554
+Y GG+VLEP+KG ++ I+++DF+SLYPSI+ +YNI T+ +D D+ +
Sbjct: 3 SYEGGIVLEPEKGLHEN-IVVLDFSSLYPSIMIKYNISPDTLVREGCEDCDVEPQVGHKF 61
Query: 555 EHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGF 614
G +PS ++ L+E RR++K MK+ + S+ D RQ+A+K+ ANS YG +G+
Sbjct: 62 RKDPP-GFIPSVLEDLLEERRRIKEKMKKLDPESEEYKLLDERQRAIKILANSFYGYMGW 120
Query: 615 PNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLM--ISCNVNDYDSVFK 672
N+R++ + A VTA GRE + T + E ++VIYGDTDSL I V K
Sbjct: 121 ANARWYCKECAEAVTAWGREYIKTTIKIAEEKGFKVIYGDTDSLFVKIDGADAVKKKVKK 180
Query: 673 IGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVV 732
+ I E LEL+I+ YK + KK+YA L +GK+ + G++VV
Sbjct: 181 LLKYINEELP-----LELEIEKFYKRGFFVTKKRYAGL----TEDGKID----VVGLEVV 227
Query: 733 RRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEI 792
RRDWS++A E V+ IL E +++ ++ + E ++K++ G VP L I
Sbjct: 228 RRDWSEIAKETQARVLEAILKEG-----DVEEAVKIVKEVIEKLK----RGEVPPEKLVI 278
Query: 793 TKQLTKAPE 801
KQLTK
Sbjct: 279 WKQLTKDLS 287
>gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit;
Provisional.
Length = 1054
Score = 168 bits (428), Expect = 1e-42
Identities = 105/337 (31%), Positives = 167/337 (49%), Gaps = 44/337 (13%)
Query: 486 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD 545
G + Y G VLEPKKGFYD+ I +DF SLYPSI+ +N+C++T ++ +D
Sbjct: 530 KYSGGGSEEKYEGATVLEPKKGFYDEPIATLDFASLYPSIMIAHNLCYST----LVPPND 585
Query: 546 ITTLCE----------YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYD 595
E + +V GILP +++L+ +R++ K MK L +
Sbjct: 586 ANNYPEDTYVTTPTGDKFVKKEVRKGILPLIVEELIAARKKAKKEMKDEK-DPLLKKVLN 644
Query: 596 IRQKALKLTANSMYGCLGFPNSRFFAQP---LAALVTAKGREILLNTKSLVENL------ 646
RQ ALK++ANS+YG G P ++ +T+ GR+++ TK LVE
Sbjct: 645 GRQLALKISANSVYGYTGAQVGGQL--PCLEVSTSITSFGRQMIDKTKELVEKHYTKANG 702
Query: 647 ---NYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLL 702
+ VIYGDTDS+M+ +D +G + +K + K ++L+ + VY LL+
Sbjct: 703 YKHDATVIYGDTDSVMVKFGTDDIQEAMDLGKEAAERISKKFLKPIKLEFEKVYCPYLLM 762
Query: 703 KKKKYAALSISKLSN-GKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYS 761
KK+YA L + K+ C KG++ VRRD L + + V+++IL E+
Sbjct: 763 NKKRYAGLLYTNPEKYDKIDC----KGIETVRRDNCLLVQQMVETVLNKILIEKD----- 813
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTK 798
+++ E K +DL + ++LL ITK L K
Sbjct: 814 ----VESAIEFTKGKISDLLQNRIDISLLVITKSLGK 846
Score = 30.0 bits (68), Expect = 9.7
Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 310 VPDLSEYLEVRYSAKCPALPSDLSGDTFSHVFGTKTSFLENLLLERKIKGPSWLEFPEAE 369
VP L +E D G + + F+ L++ I G SWL P
Sbjct: 170 VPRLRSLIESGVV--VCGGGWD--GIRLFQTYESNVPFVLRFLIDNNITGGSWLTLP-KG 224
Query: 370 KF-----PSRISWCKYEVQC 384
K+ + S C+ EV C
Sbjct: 225 KYKIRPPKKKTSTCQIEVDC 244
>gnl|CDD|220389 pfam09767, DUF2053, Predicted membrane protein (DUF2053). This
entry is of the conserved N-terminal 150 residues of
proteins conserved from plants to humans. The function
is unknown although some annotation suggests it to be a
transmembrane protein.
Length = 159
Score = 134 bits (340), Expect = 2e-36
Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 4/107 (3%)
Query: 1 MLILATFVPTTDNFSGGVDVFGDLIKLSIDLIDYVGKYLVLS--SIPGKGHAKILTAGVG 58
+L+LATF P +D SG D+FG+++K+S D ID G YLVLS + GKG ++IL G+G
Sbjct: 49 LLLLATFFPVSD--SGSFDIFGEILKISADFIDLAGLYLVLSQKTNAGKGESRILAVGLG 106
Query: 59 WAGAEVILTRFLDLWVGARGAEFDWKYIQNSLDSNICLIDKTNKFAA 105
WA AE I++R + LWVGARG EFDWKYI S+++N+ L+
Sbjct: 107 WAFAESIMSRLIPLWVGARGLEFDWKYILRSIEANLDLVQTLVLACL 153
>gnl|CDD|99920 cd05537, POLBc_Pol_II, DNA polymerase type-II subfamily catalytic
domain. Bacteria contain five DNA polymerases (I, II,
III, IV and V). DNA polymerase II (Pol II) is a
prototype for the B-family of polymerases. The role of
Pol II in a variety of cellular activities, such as
repair of DNA damaged by UV irradiation or oxidation has
been proven by genetic studies. DNA polymerase III is
the main enzyme responsible for replication of the
bacterial chromosome; however, In vivo studies have also
shown that Pol II is able to participate in chromosomal
DNA replication with larger role in lagging-strand
replication.
Length = 371
Score = 141 bits (358), Expect = 2e-36
Identities = 80/293 (27%), Positives = 131/293 (44%), Gaps = 57/293 (19%)
Query: 498 GGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQ 557
GG V++ K G Y ++L DF SLYPSII+ + I P+ +++ PE
Sbjct: 5 GGYVMDSKPGLYKNVLVL-DFKSLYPSIIRTFLI----DPLGLIEGLKAPD-----PEDL 54
Query: 558 V----------DTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANS 607
+ + ILP I +L +R + K + + A+K+ NS
Sbjct: 55 IPGFLGARFSREKHILPDLIARLWAARDEAK-------REKNAPLSQ-----AIKIIMNS 102
Query: 608 MYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVN-D 666
YG LG RFF LA+ +T +G EI+ T++ +E Y+VIYGDTDS + D
Sbjct: 103 FYGVLGSTGCRFFDPRLASSITLRGHEIMKQTRAWIEQQGYQVIYGDTDSTFVWLGEELD 162
Query: 667 YDSVFKIGNQIKSECNKLYKQ-----------LELDIDGVYKYMLLL--------KKKKY 707
IG ++ S+ N+ + Q LE++ + Y + KK+Y
Sbjct: 163 AAEAQAIGKELASQINQWWAQKLKEEFGLESFLEIEFETHYSRFFMPTIRGSDEGSKKRY 222
Query: 708 AALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDY 760
A L ++G KG++ VR DW+ LA + K + ++ +++ Y +
Sbjct: 223 AGLKS---TDGGD--ELVFKGLETVRSDWTPLARQFQKELYERVFNDEPYEGF 270
>gnl|CDD|99917 cd05534, POLBc_zeta, DNA polymerase type-B zeta subfamily catalytic
domain. DNA polymerase (Pol) zeta is a member of the
eukaryotic B-family of DNA polymerases and distantly
related to DNA Pol delta. Pol zeta plays a major role in
translesion replication and the production of either
spontaneous or induced mutations. Apart from its role in
translesion replication, Pol zeta also appears to be
involved in somatic hypermutability in B lymphocytes, an
important element for the production of high affinity
antibodies in response to an antigen.
Length = 451
Score = 140 bits (354), Expect = 3e-35
Identities = 79/279 (28%), Positives = 119/279 (42%), Gaps = 53/279 (18%)
Query: 500 LVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI----------------------- 536
LV+EP+ GFY +I++DF SLYPSI+ YN C++T
Sbjct: 40 LVMEPESGFYSDPVIVLDFQSLYPSIMIAYNYCYSTCLGRVEELNGGGKFGFLGVKLYLP 99
Query: 537 ---PVRMLQDSDITTL---CEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 590
+L D+T ++ + V GILP +++++++R VK MK+ L
Sbjct: 100 PPPLDLLLLKDDVTISPNGVMFVKKS-VRKGILPKMLEEILDTRIMVKKAMKKYKDDKKL 158
Query: 591 LMQYDIRQKALKLTANSMYGCLG------FPNSRFFAQPLAALVTAKGREILLNTKSLVE 644
D RQ ALKL AN YG P +A + GRE L L+E
Sbjct: 159 QRILDARQLALKLLANVTYGYTAASFSGRMPCVE-----IADSIVQTGRETLERAIELIE 213
Query: 645 NLNY---EVIYGDTDSLMISC---NVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYK 697
+ +V+YGDTDSL + + FKIG +I ++L + VY
Sbjct: 214 STPKWGAKVVYGDTDSLFVLLPGRTKEE---AFKIGKEIAEAVTAANPSPIKLKFEKVYH 270
Query: 698 YMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDW 736
+L+ KK+Y + + KG++ VRRD
Sbjct: 271 PCVLVTKKRYVGYKYESPDQTEPTF--DAKGIETVRRDG 307
>gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed.
Length = 787
Score = 139 bits (351), Expect = 1e-33
Identities = 92/332 (27%), Positives = 152/332 (45%), Gaps = 22/332 (6%)
Query: 475 NKKEGEET-GEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICF 533
K++ E K K Y GGLV +P G + + ++DF SLYPSII ++N+
Sbjct: 385 WKEDILRLDHEVYKKAIIKGKKYRGGLVFQPPPGIFFN-VYVLDFASLYPSIIVKWNLSP 443
Query: 534 TTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQ--VKALMKQPNLSSDLL 591
T+ + + + E D L S + L+ R K K PNL +
Sbjct: 444 ETVRIPECKCHYDDEVPELGHSVCDDRPGLTSVLVGLLRDFRVKIYKKKAKDPNLDEERR 503
Query: 592 MQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVI 651
YD+ Q+ALK+ N+ YG G N + + +A +TA GREILL+TK E L +V+
Sbjct: 504 AWYDVVQRALKVFLNASYGVFGAENFKLYRIEVAESITALGREILLSTKKKAEELGLKVL 563
Query: 652 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLK-KKKYAAL 710
YGDTDSL + +S+ ++ +I+ ++L++D Y ++ KK Y
Sbjct: 564 YGDTDSLFVWG--PTKESLEELIKEIEERTG-----IDLEVDKTYDWVAFSGLKKNY--- 613
Query: 711 SISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIH 770
L +GK+ +IKG+ +R+ + E + V+ ++L + + I
Sbjct: 614 -FGVLKDGKV----KIKGIVAKKRNTPEFVKELQREVL-EVLKSIRSPEDVEKVK-DEIE 666
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEG 802
+ +K+ L PL L I +L+K +
Sbjct: 667 DVLKRYYEKLRAKDYPLDELAIRVRLSKPLDE 698
>gnl|CDD|99913 cd05530, POLBc_B1, DNA polymerase type-B B1 subfamily catalytic
domain. Archaeal proteins that are involved in DNA
replication are similar to those from eukaryotes. Some
archaeal members also possess multiple family B DNA
polymerases (B1, B2 and B3). So far there is no specific
function(s) has been assigned for different members of
the archaea type B DNA polymerases. Phylogenetic
analyses of eubacterial, archaeal, and eukaryotic family
B DNA polymerases are support independent gene
duplications during the evolution of archaeal and
eukaryotic family B DNA polymerases.
Length = 372
Score = 122 bits (309), Expect = 5e-30
Identities = 88/318 (27%), Positives = 145/318 (45%), Gaps = 29/318 (9%)
Query: 489 KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITT 548
KG+K Y G +VLEP G + ++++DF SLYPSII+ +N+ + T V T
Sbjct: 9 KGKK---YRGAIVLEPPPGIFFN-VVVLDFASLYPSIIKVWNLSYET--VNCPHCECKTN 62
Query: 549 LCEYLPEHQVDT---GILPSEIKKLVESRRQV-KALMKQPNLSSDLLMQYDIRQKALKLT 604
+ H V GI I L + R ++ K K +L ++ YD+ Q A+K+
Sbjct: 63 EVPEVG-HWVCKKRPGITSQIIGLLRDLRVKIYKKKAKDKSLDEEMRQWYDVVQSAMKVF 121
Query: 605 ANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNV 664
N+ YG G N + P+A TA GR I+ +T L +V+YGDTDSL +
Sbjct: 122 INASYGVFGAENFPLYCPPVAESTTALGRYIITSTIKKARELGLKVLYGDTDSLFLWNPP 181
Query: 665 NDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKK-YAALSISKLSNGKMICS 723
+ ++ + ++ +L L+L++D Y+Y++ KK Y + +G +
Sbjct: 182 QE-----QLEDLVEWVEKEL--GLDLELDKEYRYVVFSGLKKNY----LGVTKDGSV--- 227
Query: 724 QEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNG 783
+IKG+ +R+ + E VI + S D+ + I + +K + L
Sbjct: 228 -DIKGLLGKKRNTPEFVKELFYEVIEILSAVNSPEDFE--KAREKIRDIVKGVYKRLKKK 284
Query: 784 FVPLTLLEITKQLTKAPE 801
L L L+K PE
Sbjct: 285 EYTLDQLAFKVMLSKPPE 302
>gnl|CDD|99914 cd05531, POLBc_B2, DNA polymerase type-B B2 subfamily catalytic
domain. Archaeal proteins that are involved in DNA
replication are similar to those from eukaryotes. Some
archaeal members also possess multiple family B DNA
polymerases (B1, B2 and B3). So far there is no specific
function(s) has been assigned for different members of
the archaea type B DNA polymerases. Phylogenetic
analyses of eubacterial, archaeal, and eukaryotic family
B DNA polymerases are support independent gene
duplications during the evolution of archaeal and
eukaryotic family B DNA polymerases.
Length = 352
Score = 113 bits (286), Expect = 3e-27
Identities = 84/320 (26%), Positives = 150/320 (46%), Gaps = 40/320 (12%)
Query: 494 AAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYL 553
A GGLV +P+ G Y+ + DF+S+YPSII +YNI TI R + D L +
Sbjct: 3 LADRGGLVFQPEPGLYENVAQI-DFSSMYPSIIVKYNISPETINCRCCECRDHVYLGHRI 61
Query: 554 PEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLG 613
G LP ++ L+E R + K L K+ + Y RQKALK + +G LG
Sbjct: 62 CLK--RRGFLPEVLEPLLERRLEYKRLKKEED-------PYAGRQKALKWILVTSFGYLG 112
Query: 614 FPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKI 673
+ N++F + +TA GR+ILL K + E + + V++G DSL I D + +
Sbjct: 113 YKNAKFGRIEVHEAITAYGRKILLRAKEIAEEMGFRVLHGIVDSLWIQGR-GDIEEL--- 168
Query: 674 GNQIKSECNKLYKQ--LELDIDGVYKYMLLLKKKKYAALS---ISKLSNGKMICSQEIKG 728
++ ++ + L ++G Y +++ L ++ +LS+G+M ++G
Sbjct: 169 -------AREIEERTGIPLKLEGHYDWIVFLPERDGLGAPNRYFGRLSDGEMK----VRG 217
Query: 729 VDVVRRDWSQLASEAGKFVISQILDE-QSYTDY--SLDDRLQNIHEHMKKIRTDLDNGFV 785
+++ RRD + + + IL ++ + ++ L +++++R
Sbjct: 218 IELRRRDTPPFVKKFQEEAL-DILASAKTPEELLKLREEALDLFRRYLQRLR------EG 270
Query: 786 PLTLLEITKQLTKAPEGGKV 805
L L I K+++K KV
Sbjct: 271 DLEDLIIEKKISKRSSEYKV 290
>gnl|CDD|217301 pfam02956, TT_ORF1, TT viral orf 1. TT virus (TTV), isolated
initially from a Japanese patient with hepatitis of
unknown aetiology, has since been found to infect both
healthy and diseased individuals and numerous prevalence
studies have raised questions about its role in
unexplained hepatitis. ORF1 is a large 750 residue
protein. The N-terminal half of this protein corresponds
to the capsid protein.
Length = 525
Score = 113 bits (284), Expect = 6e-26
Identities = 44/56 (78%), Positives = 48/56 (85%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R RRR++R R RRRR RRRR RRRRRRRR RRRRR RRRRRRRRRRRRRRRR+R+
Sbjct: 4 RWWRRRRRRWRGRRRRRRRRRARRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRKRK 59
Score = 112 bits (283), Expect = 8e-26
Identities = 42/57 (73%), Positives = 47/57 (82%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
RRRR++ R RRRR RRR RRRRRRRR RRRRR RRRRRRRRRRRRRRRR+R++
Sbjct: 4 RWWRRRRRRWRGRRRRRRRRRARRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRKRKK 60
Score = 111 bits (280), Expect = 2e-25
Identities = 43/57 (75%), Positives = 47/57 (82%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RRRRR+ R R RRRR RR RRRRRRRR RRRRR RRRRRRRRRRRRRRRR+R++
Sbjct: 4 RWWRRRRRRWRGRRRRRRRRRARRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRKRKK 60
Score = 111 bits (279), Expect = 2e-25
Identities = 42/59 (71%), Positives = 46/59 (77%)
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RRRRR + RRR RRRR RRRRRRRR RRRRR RRRRRRRRRRRRRRRR+R++
Sbjct: 4 RWWRRRRRRWRGRRRRRRRRRARRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRKRKKLI 62
Score = 110 bits (277), Expect = 4e-25
Identities = 43/59 (72%), Positives = 47/59 (79%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
RRRRRR + RR RRRR R RRRRRRRR RRRRR RRRRRRRRRRRRRRRR+R++
Sbjct: 4 RWWRRRRRRWRGRRRRRRRRRARRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRKRKKLI 62
Score = 105 bits (264), Expect = 2e-23
Identities = 43/51 (84%), Positives = 43/51 (84%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
RRR RR R RRRRRRRRR RRRRRRRR RRRRR RRRRRRRRRRRRRR K
Sbjct: 7 RRRRRRWRGRRRRRRRRRARRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRK 57
Score = 104 bits (261), Expect = 4e-23
Identities = 42/55 (76%), Positives = 44/55 (80%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R +RRR R R RRRRRRRR RRRRRRRR RRRRR RRRRRRRRRRRRRRR +
Sbjct: 4 RWWRRRRRRWRGRRRRRRRRRARRRRRRRRVRRRRRGRRRRRRRRRRRRRRRRKR 58
Score = 69.2 bits (170), Expect = 5e-12
Identities = 43/133 (32%), Positives = 46/133 (34%), Gaps = 78/133 (58%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGG 870
R R RGRRRRRR
Sbjct: 8 RRRRRWRGRRRRRR---------------------------------------------- 21
Query: 871 GGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
RRR RRRR RRRR RRRRR RRRRRRRRR
Sbjct: 22 ----RRRARRRR----------------------------RRRRVRRRRRGRRRRRRRRR 49
Query: 931 RRRRRRRRRRRRR 943
RRRRRRR+R++
Sbjct: 50 RRRRRRRKRKKLI 62
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 111 bits (280), Expect = 4e-25
Identities = 48/169 (28%), Positives = 68/169 (40%), Gaps = 7/169 (4%)
Query: 808 TQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE 867
Q R R R RR +K + + R + EEE++ ++ + +++ E
Sbjct: 125 AQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAE 184
Query: 868 EGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
G GRR R R + ++++G R RR R RRR R RR R R
Sbjct: 185 AERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNR 244
Query: 928 RRRRRR-------RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK 969
R R R RR RR R R RR RR G E E E ++ +
Sbjct: 245 EDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELREDDVL 293
Score = 90.7 bits (226), Expect = 1e-18
Identities = 29/150 (19%), Positives = 45/150 (30%)
Query: 814 RNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
R R ++ E+ + + E + E G
Sbjct: 77 ARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAAEAASAPEAAQARERRERGEA 136
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
RR R+ E+ + R ++ R RR R+ R R RR R
Sbjct: 137 ARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREER 196
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
R R RR RR + RR G+ + +
Sbjct: 197 GRDGDDRDRRDRREQGDRREERGRRDGGDR 226
Score = 89.6 bits (223), Expect = 3e-18
Identities = 38/146 (26%), Positives = 49/146 (33%), Gaps = 2/146 (1%)
Query: 813 SRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGG 872
+ R E + RR RG+ +K E E
Sbjct: 102 AEAAPAARAAAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAA 161
Query: 873 --GGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
R RR + E+++ + G R RR + R R R RR + RR R RR
Sbjct: 162 ERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSG 956
RR RRRRR RR R R
Sbjct: 222 DGGDRRGRRRRRDRRDARGDDNREDR 247
Score = 88.8 bits (221), Expect = 6e-18
Identities = 44/182 (24%), Positives = 68/182 (37%), Gaps = 9/182 (4%)
Query: 813 SRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGG 872
S + R RR++ E RR K E ++ E + EE
Sbjct: 120 SAPEAAQARERRERGEA---------ARRGAARKAGEGGEQPATEARADAAERTEEEERD 170
Query: 873 GGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
RRR R E E ++ R + RR R + RR R RR RR RR
Sbjct: 171 ERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRR 230
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
RRR RR R R R R E + + + ++ ++ +G ++E + +E+
Sbjct: 231 RRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELRED 290
Query: 993 EE 994
+
Sbjct: 291 DV 292
Score = 83.0 bits (206), Expect = 3e-16
Identities = 30/149 (20%), Positives = 43/149 (28%), Gaps = 1/149 (0%)
Query: 820 RRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRR 879
RR + + K E + E RR R
Sbjct: 75 AAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAAA-EAASAPEAAQARERRER 133
Query: 880 RRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
+ + K + G R R+ RRRR R R+ R R RR
Sbjct: 134 GEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRR 193
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEE 968
R R R RR R + + EE+ + +
Sbjct: 194 EERGRDGDDRDRRDRREQGDRREERGRRD 222
Score = 80.3 bits (199), Expect = 2e-15
Identities = 35/225 (15%), Positives = 74/225 (32%), Gaps = 8/225 (3%)
Query: 814 RNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEE--------EKKKKKEEEEEGGEKE 865
+ RG R R ++ E K +
Sbjct: 56 KEARGGGAAAAAATPAAPAAAARRAARAAAAARQAEQPAAEAAAAKAEAAPAARAAAAAA 115
Query: 866 EEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRR 925
E + R RR G+ ++ G G + + R + R R RRRR
Sbjct: 116 AEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRR 175
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK 985
R R+ R R RR R R R E+ ++++E +++ +++ + + +
Sbjct: 176 GDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDR 235
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ + ++ E + + ++ E + + +++ RR
Sbjct: 236 RDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGG 280
>gnl|CDD|222962 PHA03036, PHA03036, DNA polymerase; Provisional.
Length = 1004
Score = 107 bits (269), Expect = 1e-23
Identities = 81/331 (24%), Positives = 134/331 (40%), Gaps = 71/331 (21%)
Query: 492 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSD------ 545
K Y GG V PK+ +D +++ D+NSLYP++ N+ T+ V ++ + +
Sbjct: 526 NKFPYEGGKVFAPKQKMFDNNVLIFDYNSLYPNVCIFGNLSPETL-VGVVVNDNRLEAEI 584
Query: 546 --------------ITTLCEYLPEHQVDT---------GILPSEIKKLVESRRQVKALMK 582
I CE V GI+P +K +E R + K L+K
Sbjct: 585 NKQELRRKYPYPRYIYVHCEPRSPDLVSEIAVFDRRIEGIIPKLLKTFLEERARYKKLLK 644
Query: 583 QPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSL 642
+ S + + YD Q K+ ANS+YG +GF NS ++ A TA GR ++ S+
Sbjct: 645 EATSSVEKAI-YDSMQYTYKIVANSVYGLMGFRNSALYSYASAKSCTAIGRNMIKYLNSV 703
Query: 643 VEN--------------------------------------LNYEVIYGDTDSLMISCNV 664
+ + +YGDTDS+ + N
Sbjct: 704 LNGSKLINGKLILANCPINPFFKDDRSIDTNYDTNLPVEYNFTFRSVYGDTDSVFLEINT 763
Query: 665 NDYDSVFKIGNQIKSECNK--LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMIC 722
D D KI +++ N+ L+ +++ + VYK +++ KKKY L S +
Sbjct: 764 KDVDKSIKIAKELERIINEKVLFDNFKIEFEAVYKNLIMQSKKKYTTLKYIASSTDGSVP 823
Query: 723 SQEIKGVDVVRRDWSQLASEAGKFVISQILD 753
+ KG RRD S+ K +++LD
Sbjct: 824 ERVNKGTSETRRDVSKFHKYMIKIYKTRLLD 854
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 88.7 bits (219), Expect = 1e-17
Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 4/215 (1%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEE----EEEGGEKEEEEGGGGGG 874
++ KKK E+ K K ++ KK E K + E E E E++ E
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
+++ + K+ EEKKK + + +KK ++ + +++ +++ +++
Sbjct: 1375 EAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD 1434
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
+++ ++ +++ K+ EE +KK EE KK +E KKK E K +E KK+ EE
Sbjct: 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494
Query: 995 EKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
KKK + ++ E +KK +E K+ EE K+ +K
Sbjct: 1495 AKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK 1529
Score = 86.7 bits (214), Expect = 4e-17
Identities = 60/223 (26%), Positives = 102/223 (45%), Gaps = 12/223 (5%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR 878
+++ KK ++ K K ++ KK E KKK +E ++ E ++ + +
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA-EEAK 1534
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
+ + K EE+KK E ++ ++++++ + + R+ ++ R
Sbjct: 1535 KADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK--------KEGKTKKEEKKK 990
+ ++ + K+ EE + K EE KK EEEKKK E K K EE KK
Sbjct: 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEE---KEEEEKKRRRIRRKR 1030
EEE K K +E +K EE+KK+ EE EE+EKK +K
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
Score = 84.8 bits (209), Expect = 2e-16
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 9/220 (4%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKK----EEEEEGGEKEEEEGGGGGG 874
++ KKK + K K + K E E + EE+ E EK++EE
Sbjct: 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
+++ K +E KKK E + +K ++ +++ +++ +++
Sbjct: 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAE 1441
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
++ +++ ++ + K+ EE +K E KKK EE KK E K K EE KK+ +E
Sbjct: 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
Query: 995 -----EKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
E KKK E +K EE KK +E K+ EE K+ +K
Sbjct: 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Score = 84.4 bits (208), Expect = 2e-16
Identities = 57/214 (26%), Positives = 98/214 (45%), Gaps = 8/214 (3%)
Query: 824 RKKKEEKKKW----KRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRR 879
+KK EE KK K+ ++ KK+ E+ KKK +E + + +++ +
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
Query: 880 RRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
+ K+ EE KK + +++ + + +++ ++ + R+
Sbjct: 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
++ R EEE++ K EE KK EE K K E K EE+KK+ E+ KKK+
Sbjct: 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642
Query: 1000 KKEEEKEEEEKKEEEE----KEEEEKKRRRIRRK 1029
+E++K EE KK EEE EE KK ++K
Sbjct: 1643 AEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
Score = 82.5 bits (203), Expect = 1e-15
Identities = 65/226 (28%), Positives = 107/226 (47%), Gaps = 14/226 (6%)
Query: 819 RRRRRRKKKEEKKK--WKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRR 876
++ KK EEKKK ++ + +K EE KK +E E K EE
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
++ + + EE KK E + + +KK +++ ++ + + ++
Sbjct: 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
Query: 937 RRRRR----RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE--------GKTK 984
+++ ++ ++ KE EE +K +E KKKE EEKKK E K K
Sbjct: 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIK 1731
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
EE KKE EE+KKK ++ ++ EEE+KK K+EEEKK IR+++
Sbjct: 1732 AEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
Score = 82.1 bits (202), Expect = 1e-15
Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 6/213 (2%)
Query: 823 RRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGE--KEEEEGGGGGGRRRRRR 880
+K E K +K E +KKKEE ++ + K++ E +++
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA 1400
Query: 881 RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
K+ +E KK + +KK ++ +++ ++ +++ ++
Sbjct: 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE----EK 996
+++ ++ + K+ EE +K E KKK EE KKK + K E KK+ +E E+
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
KK E +K EE KK +E K+ EEKK+ +K
Sbjct: 1521 AKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
Score = 81.7 bits (201), Expect = 2e-15
Identities = 51/223 (22%), Positives = 109/223 (48%), Gaps = 4/223 (1%)
Query: 812 LSRNRRGRRRRRRKKKEEKKKWK--RRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEG 869
+ ++ KK EE KK ++ +++ K+ E+ KK EE+++ E ++ E
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574
Query: 870 GGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
R+ + +E ++ + ++ + ++ +++ + + ++ +++
Sbjct: 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK 1634
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK 989
+ +++ +++ ++ K EE +K +E+KKK EE KK +E + K E
Sbjct: 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
Query: 990 KEEEEEKKKKKKEEEKEEEEKKEEEE--KEEEEKKRRRIRRKR 1030
K+E EE KK ++ ++KE EEKK+ EE K EEE K + K+
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
Score = 81.3 bits (200), Expect = 2e-15
Identities = 53/207 (25%), Positives = 103/207 (49%), Gaps = 2/207 (0%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRS 883
KKKEE KK + + K +E KKK +E++++ E ++ +++
Sbjct: 1370 EKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
Query: 884 GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
K+ +E KKK + +KK +++ +++ ++ +++ ++ +
Sbjct: 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
++ +++ K+ E +KK +E KK EE KK E K +E KK +E ++ ++KKK +
Sbjct: 1490 KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
Query: 1004 E--KEEEEKKEEEEKEEEEKKRRRIRR 1028
E K EE KK EE+K+ EE K+ +
Sbjct: 1550 ELKKAEELKKAEEKKKAEEAKKAEEDK 1576
Score = 81.3 bits (200), Expect = 2e-15
Identities = 52/213 (24%), Positives = 102/213 (47%), Gaps = 8/213 (3%)
Query: 825 KKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRS- 883
KKK E+ K E E ++K E E ++E ++ ++ ++++
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
Query: 884 --GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
K+ EE KKK + +KK ++++ +++ +++ ++ +++
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK-- 999
++ +++ K+ +E +KK EE KK +E KKK E KK ++ K+ E KKK
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADE 1514
Query: 1000 -KKEEEKE--EEEKKEEEEKEEEEKKRRRIRRK 1029
KK EE + +E KK EE K+ +E K+ ++K
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
Score = 81.0 bits (199), Expect = 2e-15
Identities = 56/230 (24%), Positives = 112/230 (48%), Gaps = 17/230 (7%)
Query: 812 LSRNRRGRRRRRRKKKEEKKKWK--RRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEG 869
+ ++ KK EEKKK ++ ++ KK+ E+ KK EE++ ++ EE
Sbjct: 1527 AKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA 1586
Query: 870 GGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
R + +EE++ K +E ++ + + ++ + +++ + +++
Sbjct: 1587 KKAEEARIEEVMKLYEEEKKMKAEEA-----KKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK 989
+++ ++ + + + K EE+++K +E KK EE+EKK E K+ E+
Sbjct: 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA 1701
Query: 990 KEEEEEKKKKKKEEEKEEEEKKEEEE----------KEEEEKKRRRIRRK 1029
K+ EE KKK+ +E++K EE KK EEE + EE+KK+ +K
Sbjct: 1702 KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
Score = 81.0 bits (199), Expect = 3e-15
Identities = 54/217 (24%), Positives = 108/217 (49%), Gaps = 8/217 (3%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGE--KEEEEGGGGGGRR 876
R+ KK EEKKK ++ KK +E KKK EE ++ E K+ EE
Sbjct: 1278 RKADELKKAEEKKKADE---AKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAA 1334
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRR---RRRRRRRRRRR 933
+++ + K E K + +++ + ++ +++ +++ +++
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
+++ +++ ++ + K+ +E +KK EEKKK +E KKK E K +E KK+ E
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E KK ++ +++ EE +K +E +K+ EE K+ +K+
Sbjct: 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
Score = 79.8 bits (196), Expect = 7e-15
Identities = 53/212 (25%), Positives = 104/212 (49%), Gaps = 3/212 (1%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR 878
++ +KK + KK + K EE+KKK E ++ K++ + ++
Sbjct: 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
+ + K+ EE KK + ++ KK ++++ ++ +++ ++ ++
Sbjct: 1432 KADEAKKKAEEAKKADEAK-KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKK 1490
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
+ +++ ++ K++ +E KK EE KK +E KK +E K E KK EE+++ +
Sbjct: 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
Query: 999 KKKEEE--KEEEEKKEEEEKEEEEKKRRRIRR 1028
KK EE K EE+KK EE K+ EE K +R+
Sbjct: 1551 LKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
Score = 79.0 bits (194), Expect = 1e-14
Identities = 64/245 (26%), Positives = 112/245 (45%), Gaps = 8/245 (3%)
Query: 794 KQLTKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKK 853
++L KA E K + R+ KK E+ + + + K EE KK
Sbjct: 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKK 1614
Query: 854 KKEEEEEGGE--KEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSR 911
+E + + E K EEE +++ K EE KK +E + KK +
Sbjct: 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDK 1674
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS---GKEEEEEEKKKEE 968
++ ++ ++ ++ ++ +++ ++++ K EEE + K EE
Sbjct: 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEEKKK---KKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
KKE EE KKK + KK+E++K++ KK KK EE ++E+E EEE +EE++KRR
Sbjct: 1735 AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM 1794
Query: 1026 IRRKR 1030
K+
Sbjct: 1795 EVDKK 1799
Score = 78.6 bits (193), Expect = 1e-14
Identities = 54/211 (25%), Positives = 105/211 (49%), Gaps = 7/211 (3%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEE----EEGGEKEEEEGGGGGG 874
++ KK EEKKK ++ KK +E KKK EE + +K EE
Sbjct: 1290 KKADEAKKAEEKKKADE--AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
+ + + E ++K E ++ +KK ++++ +++ +++ +++
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK-EEKKKEEEEKKKKEGKTKKEEKKKEEE 993
++ +++ +++ K++ +E KKK EE KK +E KKK E K EE KK+ E
Sbjct: 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE 1467
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
E KK + +++ EE +K +E +K+ EE K++
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 77.5 bits (190), Expect = 3e-14
Identities = 52/219 (23%), Positives = 93/219 (42%), Gaps = 6/219 (2%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGG 870
+ R+ +R + + + ++ R+ KK E +K +E + ++ E+
Sbjct: 1141 KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR 1200
Query: 871 GGGGRRR----RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRR 926
R+ R+ + K E+ KK + + +K +++ R R+
Sbjct: 1201 KAEAARKAEEERKAEEARKAEDAKKAEAVK--KAEEAKKDAEEAKKAEEERNNEEIRKFE 1258
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
R RR+ + R+ ++ K++ +E KK EEKKK +E KKK E K +
Sbjct: 1259 EARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
E KK+ EE KKK ++K EE KK E + E +
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357
Score = 76.7 bits (188), Expect = 5e-14
Identities = 57/199 (28%), Positives = 100/199 (50%), Gaps = 13/199 (6%)
Query: 826 KKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGE---KEEEEGGGGGGRRRRRRRR 882
KK E+ K K + KK E+ KKK+ EE++ E K EEE + +
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN------KIKAAEE 1666
Query: 883 SGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
+ K EE+KKK E ++ + +++ + ++ +++ +++ +
Sbjct: 1667 AKKAEEDKKKAE----EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK 1722
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
+ + + + KE EE++KK EE KK+EEEKKK K+EEKK EE ++K+ E
Sbjct: 1723 KAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
Query: 1003 EEKEEEEKKEEEEKEEEEK 1021
EE +EE++K E +++ K
Sbjct: 1783 EELDEEDEKRRMEVDKKIK 1801
Score = 76.7 bits (188), Expect = 6e-14
Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 15/221 (6%)
Query: 824 RKKKEEKKK---WKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRR 880
+K E KKK K+ ++ KK EE KK E ++ +K+ +E ++
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE 1562
Query: 881 RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
++ +E ++ ++ + R+ KK +R + ++ + ++ + +
Sbjct: 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE----KKKKEGKTKKEEKKKEEE--- 993
++ +++ K++E EEKKK E+ K+ EE K +E K +E+KKK EE
Sbjct: 1623 EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
Query: 994 EEKKKKKKEEE--KEEEEKKEEEE---KEEEEKKRRRIRRK 1029
E+ +KK E KE EE K+ EE KE EEKK+ +K
Sbjct: 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 76.7 bits (188), Expect = 6e-14
Identities = 40/205 (19%), Positives = 97/205 (47%), Gaps = 3/205 (1%)
Query: 823 RRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRR 882
R+ ++ K + R+ R+ +++ E+ +K E+ ++ ++ E ++
Sbjct: 1188 RKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEE 1247
Query: 883 SGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
EE +K +E RR+ + R++ ++ +++ ++ +++
Sbjct: 1248 ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEA 1307
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK- 1001
+++ ++ + K+ EE +KK + KK+ EE KK K E + +E E ++K
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAE 1367
Query: 1002 --EEEKEEEEKKEEEEKEEEEKKRR 1024
E++KEE +KK + K++ E+K++
Sbjct: 1368 AAEKKKEEAKKKADAAKKKAEEKKK 1392
Score = 75.9 bits (186), Expect = 9e-14
Identities = 45/222 (20%), Positives = 99/222 (44%), Gaps = 9/222 (4%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGG 870
+ R+ R+ ++ + + ++ R+ +K EE +K ++ ++ K+ EE
Sbjct: 1177 KAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEA- 1235
Query: 871 GGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
++ + K EEE+ +E R RR ++ R+ ++ +
Sbjct: 1236 ------KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEK 1289
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
++ ++ +++ +++ + K +E ++K +E KKK + KKK E K E K
Sbjct: 1290 KKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK 1349
Query: 991 EEEEEKKK--KKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E E + EE+ E EKK+EE K++ + +++ K+
Sbjct: 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Score = 75.6 bits (185), Expect = 1e-13
Identities = 52/241 (21%), Positives = 112/241 (46%), Gaps = 25/241 (10%)
Query: 809 QIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEE 868
++R + + R R+ ++E K + R+ ++ K+ E+ KK EE + E+E
Sbjct: 1192 ELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN 1251
Query: 869 GGGGGGRRRR-----RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRR 923
R RR+ + K EE +K E +++ + +++ ++ +++
Sbjct: 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKA 1311
Query: 924 RRRRRRRRRRRRRRRRRRR----RRRRRRRRRRRRSGKEEEE----------------EE 963
++ +++ +++ +++ ++ + K E E E+
Sbjct: 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
KK+E KKK + KKK E K K +E KK+ EE+KKK + ++ +KK +E K++ E+K+
Sbjct: 1372 KKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Query: 1024 R 1024
+
Sbjct: 1432 K 1432
Score = 75.6 bits (185), Expect = 1e-13
Identities = 52/224 (23%), Positives = 105/224 (46%), Gaps = 12/224 (5%)
Query: 807 ITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEE 866
I + +R RR+ K EE +K K+ E+KKK +E ++ EK++
Sbjct: 1254 IRKFEEARMAHFARRQAAIKAEEARKADEL----------KKAEEKKKADEAKKAEEKKK 1303
Query: 867 EEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRR 926
+ ++ + K+ EE KKK ++ KK + + +
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
+ +++ +++ +++ ++ K +E ++K +E+KKK +E KK K K +
Sbjct: 1364 EKAEAAEKKKEEAKKKADAAKKKAEEKK--KADEAKKKAEEDKKKADELKKAAAAKKKAD 1421
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E KK+ EE+KK + +++ EE +K +E +K+ EE K+ +K+
Sbjct: 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Score = 75.2 bits (184), Expect = 2e-13
Identities = 62/231 (26%), Positives = 106/231 (45%), Gaps = 19/231 (8%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR 878
++ KKK ++ K K + KK EE KK E +++ E ++ E +
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
+ + K+ EE KK + + +KK +++ +++ ++ ++ ++
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
Query: 939 RRRRRRRRRRRRRRRRSGKE--EEEEEKKKEEKKKEEEEKKKKEGKT----------KKE 986
++ ++ ++ E + EE KK EEKKK EE KK +E K K E
Sbjct: 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAE 1590
Query: 987 EKKKEE-----EEEKKKKKKEEEKEEEEKKEEEE--KEEEEKKRRRIRRKR 1030
E + EE EEEKK K +E +K EE K + EE K EEEKK+ +K+
Sbjct: 1591 EARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKK 1641
Score = 74.8 bits (183), Expect = 2e-13
Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 4/211 (1%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR 878
++ +KK +E KK + K KKK E +++ EK++ + +
Sbjct: 1385 KKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
+ + K+ EE KK E +++ K+ ++++ ++ +++ +++
Sbjct: 1445 KADEAKKKAEEAKKAEEA--KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE--EEEK 996
++ +++ ++ ++ +E KK EE KK +E KK +E K E KK EE + E+
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE 1562
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
KKK +E +K EE+K K EE KK R
Sbjct: 1563 KKKAEEAKKAEEDKNMALRKAEEAKKAEEAR 1593
Score = 73.6 bits (180), Expect = 5e-13
Identities = 52/219 (23%), Positives = 101/219 (46%), Gaps = 12/219 (5%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR 878
+ R +E +K + R RR+ + E+ +K +E ++ EK++ + +++
Sbjct: 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKK 1303
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
K EE KK E +++ + ++++ + + ++ +
Sbjct: 1304 ADEAKKKAEEAKKADEA----KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEA 1359
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK-KEGKTKKEEKKKEEEEEKK 997
+ +++ + K+ + +KK EEKKK +E KKK +E K K +E KK +KK
Sbjct: 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
Query: 998 ----KKKKEEEKEEEE---KKEEEEKEEEEKKRRRIRRK 1029
KKK EE+K+ +E K EE +K +E KK+ +K
Sbjct: 1420 ADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458
Score = 72.9 bits (178), Expect = 8e-13
Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 14/234 (5%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEE-EGGEKEEEEG 869
R+ R+ R+ ++ + + K+ R+ +K EE +K ++ + E K EEE
Sbjct: 1153 RVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEER 1212
Query: 870 GGGGGRRRRRRRRSG--KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
R+ +++ K+ EE KK + R + +R RR+
Sbjct: 1213 KAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAI 1272
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK-- 985
+ R+ ++ +++ ++ K+ +E +KK EE KK +E KKK E KK
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332
Query: 986 -------EEKKKEE--EEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E KK E + E + E E EE+ + E+K+EE KK+ +K+
Sbjct: 1333 AAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
Score = 70.9 bits (173), Expect = 3e-12
Identities = 56/238 (23%), Positives = 108/238 (45%), Gaps = 7/238 (2%)
Query: 797 TKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKE 856
KA E K + R+ R+ ++ + + KR R+ +K EE +K ++
Sbjct: 1115 RKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAED 1174
Query: 857 EEEEGGEKEEEEGGGGGGRRR----RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRR 912
++ ++ EE R+ R+ + K EEE+K +E R+ KK ++
Sbjct: 1175 AKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEA---RKAEDAKKAEAVKK 1231
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE 972
++ ++ R R+ R RR+ ++ + + +E KK E+KK+
Sbjct: 1232 AEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK 1291
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+E KK E K K +E KK+ EE KK + +++ EE +KK + K++ E+ ++ +
Sbjct: 1292 ADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAK 1349
Score = 66.3 bits (161), Expect = 8e-11
Identities = 55/234 (23%), Positives = 103/234 (44%), Gaps = 30/234 (12%)
Query: 814 RNRRGRRRRRRKKKEEKKKW---KRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGG 870
+ G+ RK +E KKK ++ R+ +K EE +K ++ + ++ E+
Sbjct: 1105 KTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDA- 1163
Query: 871 GGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
R+ + K E+ KK + R+ ++ R++ R R+ R+
Sbjct: 1164 -------RKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEE 1216
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEE---------------EE 975
R+ ++ ++ ++ K+ EEE +E +K EE EE
Sbjct: 1217 ARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
Query: 976 KKKKEGKTKKEEKKKEEE----EEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+K + K EEKKK +E EEKKK + ++K EE KK +E K++ E+ +++
Sbjct: 1277 ARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 62.5 bits (151), Expect = 1e-09
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 25/206 (12%)
Query: 844 RGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRR 903
GK EE KK + + EE + EE + R+ R++ E+ +K +E +R
Sbjct: 1097 FGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKA---EDARKAEEARKAEDAKR 1153
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
+ R++ +R+ R+ ++ R+ R+ R+ R+ + EEE
Sbjct: 1154 VEIARKAED--ARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEE 1211
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE------------------- 1004
+K EE +K E+ KK + K +E KK EE +K ++++ E
Sbjct: 1212 RKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAA 1271
Query: 1005 -KEEEEKKEEEEKEEEEKKRRRIRRK 1029
K EE +K +E K+ EEKK+ +K
Sbjct: 1272 IKAEEARKADELKKAEEKKKADEAKK 1297
Score = 61.7 bits (149), Expect = 2e-09
Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 6/189 (3%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
KE+ + + EE G +E ++ G R+ + K+ E+ +K E R+ +
Sbjct: 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEA--RKAEDAR 1140
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK-EEEEEEK 964
K +R+ +R R+ R+ R+ ++ R+ R++ + + E+ +
Sbjct: 1141 KAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDAR 1200
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEE---EEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
K E +K EEE+K +E + ++ KK E EE KK +E +K EEE+ EE ++ EE
Sbjct: 1201 KAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
Query: 1022 KRRRIRRKR 1030
+ R++
Sbjct: 1261 RMAHFARRQ 1269
Score = 60.2 bits (145), Expect = 6e-09
Identities = 46/205 (22%), Positives = 87/205 (42%), Gaps = 4/205 (1%)
Query: 828 EEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEE 887
E K + K G + ++ KE+ EE G ++ + +
Sbjct: 1057 EGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARK 1116
Query: 888 EEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
E+ KK+ R+ +K +R+ R+ +R R+ R+ R+ +
Sbjct: 1117 AEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK 1176
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK----KKKKKEE 1003
+ R++ + + EE +K E ++ E +K E + K EE +K E+ +K KK ++ +
Sbjct: 1177 KAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAK 1236
Query: 1004 EKEEEEKKEEEEKEEEEKKRRRIRR 1028
+ EE KK EEE+ EE ++ R
Sbjct: 1237 KDAEEAKKAEEERNNEEIRKFEEAR 1261
Score = 46.3 bits (109), Expect = 1e-04
Identities = 55/252 (21%), Positives = 99/252 (39%), Gaps = 16/252 (6%)
Query: 794 KQLTKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKK 853
++L KA E K+ + ++ KK EE +K + KK EE KK
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
Query: 854 KKEEEEEGGE--KEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSR 911
K+ EE++ E K+ EE ++ K++ E+ KK+ ++ KK +
Sbjct: 1710 KEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKK 1769
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE---------EEEE 962
R+ + +RR ++ + GKE E E+
Sbjct: 1770 AEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMED 1829
Query: 963 EKKKE-----EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
KE + EE + +K K E ++ +E K+++ KE++E++ EE E
Sbjct: 1830 SAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADE 1889
Query: 1018 EEEKKRRRIRRK 1029
E+ + I R+
Sbjct: 1890 IEKIDKDDIERE 1901
Score = 41.3 bits (96), Expect = 0.003
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE 991
+ + + + + KE+ ++ EE + EE KK E +E +K E
Sbjct: 1059 KAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAE 1118
Query: 992 E---EEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
E + E +K +E K E+ +K EE ++ E+ KR I RK
Sbjct: 1119 EAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARK 1159
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 81.2 bits (201), Expect = 2e-15
Identities = 38/144 (26%), Positives = 82/144 (56%), Gaps = 4/144 (2%)
Query: 886 EEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
+E+ K E R++ RRK R+ +RR R+ RR R R RR R R RR RR+
Sbjct: 589 QEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRR---NRRQ 645
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
+++ R ++ E EK + + ++++ +++++ + + +EK++ ++E K +E+
Sbjct: 646 AQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQ-RRRNDEKRQAQQEAKALNVEEQSV 704
Query: 1006 EEEEKKEEEEKEEEEKKRRRIRRK 1029
+E E++E ++ + +K+R++ +K
Sbjct: 705 QETEQEERVQQVQPRRKQRQLNQK 728
Score = 79.3 bits (196), Expect = 6e-15
Identities = 35/148 (23%), Positives = 76/148 (51%), Gaps = 14/148 (9%)
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
K +E+ K K R+ RR+ R+ RR R RR R R RR R R
Sbjct: 587 KPQEQPAPKAE--------AKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREE 638
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
RR RR+ ++ E E ++ + +K ++++++ + +++ ++ +E K++ ++E
Sbjct: 639 NRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDE----KRQAQQEA 694
Query: 1005 KEEEEKKEEEEKEEEEKKRRRI--RRKR 1030
K +++ ++ E+E++ +++ RRK+
Sbjct: 695 KALNVEEQSVQETEQEERVQQVQPRRKQ 722
Score = 62.4 bits (152), Expect = 1e-09
Identities = 40/217 (18%), Positives = 82/217 (37%), Gaps = 37/217 (17%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
K +E+ K E + +++ RR R RR + + ++EG R RR
Sbjct: 586 TKPQEQPAPKAEAKPE-RQQDRRKPRQNNRRDRNERRD--TRDNRTRREGRENREENRRN 642
Query: 906 KRRR---------------SRRRRSRRRRRRRRRRRRRRRRRRRRRR------------- 937
+R+ + + R++ +++ RR R+RRR +R+
Sbjct: 643 RRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQ 702
Query: 938 ------RRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE 991
+ R ++ + RR++R+ + K E+ +E EE E ++ +
Sbjct: 703 SVQETEQEERVQQVQPRRKQRQLNQKVRIEQSVAEEAVAPVVEETVAAEPVVQEVPAPRT 762
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
E + + E++++ E + RR RR
Sbjct: 763 ELVKVPLPVVAQTAPEQDEENNAENRDNNGMPRRSRR 799
Score = 31.5 bits (72), Expect = 3.0
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 29/91 (31%)
Query: 815 NRRGRRRR-----------------RRKKKEEKKKWKRRGGGRRRRRGKKE--EEKKKKK 855
NRR RR+ + + ++E+++ RR RRR K++ +E K
Sbjct: 639 NRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALN 698
Query: 856 EEEEEGGEKEEEEGGGGGGRRR----RRRRR 882
EE+ E E+EE R + RR++R
Sbjct: 699 VEEQSVQETEQEE------RVQQVQPRRKQR 723
Score = 30.4 bits (69), Expect = 5.8
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKK-------EEEKEEEEKKEEEEKEEEEKKRRR 1025
EE K +E K E K E +++++K ++ E + + E +E E+ RR
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENREENRRN 642
Query: 1026 IRRK 1029
R+
Sbjct: 643 RRQA 646
>gnl|CDD|99921 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B subfamily
catalytic domain. Bacteria contain five DNA polymerases
(I, II, III, IV and V). DNA polymerase II (Pol II) is a
prototype for the B-family of polymerases. The role of
Pol II in a variety of cellular activities, such as
repair of DNA damaged by UV irradiation or oxidation has
been proved by genetic studies. DNA polymerase III is
the main enzyme responsible for replication of the
bacterial chromosome; however, In vivo studies have also
shown that Pol II is able to participate in chromosomal
DNA replication with larger role in lagging-strand
replication.
Length = 347
Score = 76.8 bits (189), Expect = 8e-15
Identities = 76/308 (24%), Positives = 112/308 (36%), Gaps = 45/308 (14%)
Query: 495 AYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLP 554
+ GG G I+ D SLYPSI+ Y IC P R DS
Sbjct: 2 KFEGGYAYVFITGVLGP-IVHADVASLYPSIMLAYRIC----PAR---DS---------- 43
Query: 555 EHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGF 614
GI + +K LVE R K + + + +Q A K+ NS YG LG
Sbjct: 44 -----LGIFLALLKYLVELRLAAKESARAAARPA-ERDAFKAKQAAFKVLINSFYGYLGT 97
Query: 615 PNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSVFKIG 674
F AA VT GRE+L + + DTD + +
Sbjct: 98 GLHAFSDPEAAAEVTRLGRELLKLMIRWLRRRGATPVEVDTDGIYFI--PPNGVDTEDEE 155
Query: 675 NQIKSECNK-LYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVR 733
++ E + L K + ++ DG Y+ M K K YA L +GK+I +KG
Sbjct: 156 EELVRELSSTLPKGITVEFDGRYRAMFSYKIKNYALLD----YDGKLI----VKGSAFRS 207
Query: 734 RDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEIT 793
R E F+ L +H+ + L + +P++ L T
Sbjct: 208 RGIEPFLRE---FLR-------EAVRLLLQGDGAGVHDLYEDYLRRLRSHELPISDLART 257
Query: 794 KQLTKAPE 801
+ L ++PE
Sbjct: 258 ETLKESPE 265
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
splicing factor. These splicing factors consist of an
N-terminal arginine-rich low complexity domain followed
by three tandem RNA recognition motifs (pfam00076). The
well-characterized members of this family are auxilliary
components of the U2 small nuclear ribonuclearprotein
splicing factor (U2AF). These proteins are closely
related to the CC1-like subfamily of splicing factors
(TIGR01622). Members of this subfamily are found in
plants, metazoa and fungi.
Length = 509
Score = 71.1 bits (174), Expect = 1e-12
Identities = 36/117 (30%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
R R K + + RRR R + R R R RRSR R R R R RRR
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 935 RRRR------RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK 985
R R RR R R RRR R RS ++ + + + ++ KK+ K
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIK 117
Score = 68.0 bits (166), Expect = 1e-11
Identities = 35/114 (30%), Positives = 47/114 (41%)
Query: 857 EEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSR 916
+EE E+E+ G R RRRS + + R R + R RR SR
Sbjct: 2 DEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSR 61
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKK 970
R R RR R R RRR R R + RRR R R + +++KK+
Sbjct: 62 SPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWD 115
Score = 66.1 bits (161), Expect = 4e-11
Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRR-----RSRRRRRRRRRRRRRRRRRRRRRRRR 939
++EE +++E GR R R +R R R R R R RR R R R R R RRR
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
R R R RR R + E+ + + + +K++KK+ + K
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIKPPG 120
Score = 64.5 bits (157), Expect = 1e-10
Identities = 32/118 (27%), Positives = 48/118 (40%)
Query: 854 KKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRR 913
+ EE + EK R RRR R ++ ++ R R + RR
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
RS R R RR R R RRR R R + RRR R R + ++++++ + K
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIKP 118
Score = 63.8 bits (155), Expect = 2e-10
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR---RRRRRRRRRRRRRS 955
R R K R R R R S R RRR R R R R R RR R R R R R RRR R
Sbjct: 5 PDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPR 64
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+ ++ ++ + E ++ + + +K KK
Sbjct: 65 SLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKK 110
Score = 61.1 bits (148), Expect = 2e-09
Identities = 34/139 (24%), Positives = 49/139 (35%), Gaps = 21/139 (15%)
Query: 820 RRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRR 879
R R+K + + + RRR R + + ++ E E R R R
Sbjct: 5 PDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDS---------RPRDR 55
Query: 880 RRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
RR + R R RRSR R RR R R + RRR R R +
Sbjct: 56 RRYDSRS------------PRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQ 103
Query: 940 RRRRRRRRRRRRRRRSGKE 958
R+ ++R + G E
Sbjct: 104 WRKDDKKRSLWDIKPPGYE 122
Score = 56.4 bits (136), Expect = 5e-08
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 3/112 (2%)
Query: 903 RRKKRRRSR---RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
R ++ R R R R R R R RRR R R R R R RR R R R R R R +
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+ + ++ ++ ++ + ++ + + K+++++
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRS 112
Score = 53.7 bits (129), Expect = 3e-07
Identities = 22/119 (18%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
R R + R R R R R RRR R R R R R RR R R R ++ ++++ + +
Sbjct: 5 PDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYR--EDSRPRDRRRYDSRS 62
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ +++ +++ + + E+ + + + ++R
Sbjct: 63 PRSLRYSSVRRSRDRPRRRS-----RSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDI 116
Score = 52.6 bits (126), Expect = 7e-07
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR---RRRRRRSGKE 958
R + R + R R R R R RRR R R R R R RR R R R R R RR
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+ ++ + +++ + E + + + + +++++K+
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSRSVRSIE--QHRRRLRDRSPSNQWRKDDKKR 111
Score = 51.0 bits (122), Expect = 2e-06
Identities = 22/111 (19%), Positives = 45/111 (40%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEE 973
R R R + R R R R R RRR R R R R R RR + E+ + ++ ++ +
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+ + + + + + + E+ + + + ++ K+R
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKR 111
Score = 44.5 bits (105), Expect = 3e-04
Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 12/109 (11%)
Query: 813 SRNRRGRRRRRRKKKEEKKKWKRRGGGRR---RRRGKKEEEKKKKKEEEEEGGEKEEEEG 869
SR R R R ++ + + + R RR R + + +++ +
Sbjct: 12 SRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPRSLRYSSV 71
Query: 870 GGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRR 918
R RRR R E+ RRR R + R+ ++R
Sbjct: 72 RRSRDRPRRRSRSVRSIEQH---------RRRLRDRSPSNQWRKDDKKR 111
>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777). This is a
family of eukaryotic proteins of unknown function. Some
of the proteins in this family are putative nucleic acid
binding proteins.
Length = 158
Score = 64.9 bits (158), Expect = 4e-12
Identities = 46/113 (40%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 896 GGGRRRRRRKKRRRSRRR-RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
G R R R+ RRR R R R RR RRR R R R R RRRR R R R RR R RR R
Sbjct: 2 GRSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRS 61
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
+ +K E+ K+ E KK+ E++K +EE + K +EE E
Sbjct: 62 RSRSPSRRRDRKRERDKDAREPKKR-------ERQKLIKEEDLEGKSDEEVEM 107
Score = 63.0 bits (153), Expect = 2e-11
Identities = 40/99 (40%), Positives = 53/99 (53%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
R RRR + R R RR R R R R R R RRRR R R R RR R RR R R R S +
Sbjct: 11 RSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRSRSPSRRR 70
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK 997
+ + E+ K+ ++ ++ E++K + E K EE E K
Sbjct: 71 DRKRERDKDAREPKKRERQKLIKEEDLEGKSDEEVEMMK 109
Score = 59.1 bits (143), Expect = 4e-10
Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
RR RRR RS + +++ R R R ++R R RR RSR R RR R RR R R
Sbjct: 10 RRSRRRGRSRSRDRRERR------RERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSRS 63
Query: 935 R--RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
R RRR R+R R + R ++ +++ +E+ E K EE E K G
Sbjct: 64 RSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDEEVEMMKMMG 112
Score = 58.7 bits (142), Expect = 6e-10
Identities = 41/106 (38%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 882 RSGKEEEEKKKKEGGGGRRRRRRKKRRRSR-RRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
RS + ++ G R RR ++R RSR R R RRRR R R R RR R RR R R
Sbjct: 3 RSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSR 62
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
R RRR R+R R E +++++++ KEE EGK+ +E
Sbjct: 63 SRSPSRRRDRKRERDKDAREPKKRERQKLIKEE----DLEGKSDEE 104
Score = 53.3 bits (128), Expect = 5e-08
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
R R R RR RRR R R R RR RRR R R R R R + + + + +
Sbjct: 3 RSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSR 62
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+++ ++K+E +++ ++ KK E ++ ++++ E K +EE
Sbjct: 63 SRSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDEE 104
Score = 51.0 bits (122), Expect = 3e-07
Identities = 31/102 (30%), Positives = 52/102 (50%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
R R R RR RRR R R R RR RRR R R R R RR + + + +
Sbjct: 3 RSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSR 62
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+ +++ K++ +++ ++ KK+E +K +E+ E + +EE
Sbjct: 63 SRSPSRRRDRKRERDKDAREPKKRERQKLIKEEDLEGKSDEE 104
Score = 42.9 bits (101), Expect = 1e-04
Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
R R R RR RRR R R R RR RRR RS E+ + + + + + ++ +
Sbjct: 3 RSRSRSPRRSRRRGRSRSRDRRERRRERS----RSRERDRRRRSRSRSPHRSRRSRSPRR 58
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+ + +++ +K E ++ + ++ E+++ K+
Sbjct: 59 HRSRSRSPSRRRDRKRERDKDAREPKKRERQKLIKE 94
Score = 31.8 bits (72), Expect = 1.1
Identities = 19/86 (22%), Positives = 41/86 (47%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
R R R RR RRR RS + E +++ + +E + +++ ++ ++ + +
Sbjct: 3 RSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSR 62
Query: 1000 KKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+ + + K+E ++ E KKR R
Sbjct: 63 SRSPSRRRDRKRERDKDAREPKKRER 88
Score = 29.1 bits (65), Expect = 6.5
Identities = 14/88 (15%), Positives = 40/88 (45%)
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
R R R RR RRR + +++ E+ + E +++ +++ + + ++ + +
Sbjct: 3 RSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRSRSRSPHRSRRSRSPRRHRSR 62
Query: 1002 EEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
++ E ++ + ++R R+K
Sbjct: 63 SRSPSRRRDRKRERDKDAREPKKRERQK 90
>gnl|CDD|221491 pfam12254, DNA_pol_alpha_N, DNA polymerase alpha subunit p180 N
terminal. This domain family is found in eukaryotes,
and is approximately 70 amino acids in length. The
family is found in association with pfam00136,
pfam08996, pfam03104. This family is the N terminal of
DNA polymerase alpha subunit p180 protein. The N
terminal contains the catalytic region of the alpha
subunit.
Length = 67
Score = 61.1 bits (149), Expect = 7e-12
Identities = 29/67 (43%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 106 FQKLKDLKGQGVKHKYEFTADE--NVYEEVSEKEYTERVLKR-QEDDWIDDDGGDGYVED 162
KL+ + G K E+ +E ++Y+EV E+EY + V +R DD+I DD G+GYV+D
Sbjct: 1 LAKLRAAREGGKKRLDEYEVEEEKDIYDEVDEEEYRKIVRQRLLNDDFIVDDDGEGYVDD 60
Query: 163 GREIFDD 169
GRE +DD
Sbjct: 61 GREEWDD 67
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This protein,
which interacts with both microtubules and TRAF3 (tumour
necrosis factor receptor-associated factor 3), is
conserved from worms to humans. The N-terminal region is
the microtubule binding domain and is well-conserved; the
C-terminal 100 residues, also well-conserved, constitute
the coiled-coil region which binds to TRAF3. The central
region of the protein is rich in lysine and glutamic acid
and carries KKE motifs which may also be necessary for
tubulin-binding, but this region is the least
well-conserved.
Length = 506
Score = 68.4 bits (167), Expect = 9e-12
Identities = 37/186 (19%), Positives = 83/186 (44%), Gaps = 22/186 (11%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRR 904
G K K K +E + +EEE K+KE +++++
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEE----------------------KEKEQVKEEKKKKK 121
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
+K + + R + + +R + + + + ++ R R ++R R R + ++ +K
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKK 181
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
K KKKE E++K+ ++ K K EE + +++++EE + ++++ EE++ R+
Sbjct: 182 KPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQ 241
Query: 1025 RIRRKR 1030
R
Sbjct: 242 SSEISR 247
Score = 67.2 bits (164), Expect = 2e-11
Identities = 37/203 (18%), Positives = 84/203 (41%), Gaps = 7/203 (3%)
Query: 825 KKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSG 884
K +E K + + + + K+E++KKK+K +EE K +EE + +R
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEE-------AKEKRPPKE 145
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
KE+E++KK E R ++++R R++ R + +++ +++ ++R+ R +
Sbjct: 146 KEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVK 205
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
+ ++EE++ K +E EE + ++ ++
Sbjct: 206 GKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASP 265
Query: 1005 KEEEEKKEEEEKEEEEKKRRRIR 1027
+ E K E + + R
Sbjct: 266 ETRESSKRTETRPRTSLRPPSAR 288
Score = 60.7 bits (147), Expect = 2e-09
Identities = 39/209 (18%), Positives = 93/209 (44%), Gaps = 7/209 (3%)
Query: 822 RRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRR 881
+R +K K + + + +EE+K+K++ +EE +K+E+ + +
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKP-------KEEPKD 130
Query: 882 RSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
R KEE ++K+ + + ++ + R R +R R R + R ++ +++ +++
Sbjct: 131 RKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEP 190
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
++R+ R + EE + +E +K+E++ K ++ + EE + + E ++
Sbjct: 191 PEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSS 250
Query: 1002 EEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K+ + E E +R R R
Sbjct: 251 SSLKKPDPSPSMASPETRESSKRTETRPR 279
Score = 58.7 bits (142), Expect = 9e-09
Identities = 35/224 (15%), Positives = 94/224 (41%), Gaps = 21/224 (9%)
Query: 791 EITKQLTKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEE 850
E K++ K G T+ + ++K++ K+ +K+++
Sbjct: 75 EAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKE--------------EKKKK 120
Query: 851 KKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRS 910
K+K KEE ++ KEE + +R + KE+E+K ++ ++R + R +S
Sbjct: 121 KEKPKEEPKDRKPKEEAK-------EKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKS 173
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKK 970
R ++ +++ +++ ++R+ R + + R +E++ ++++
Sbjct: 174 RPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSP 233
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
EE+E ++ +++ ++ + E +E ++ E
Sbjct: 234 MEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTETR 277
Score = 53.7 bits (129), Expect = 4e-07
Identities = 43/231 (18%), Positives = 84/231 (36%), Gaps = 20/231 (8%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKK----KKKEEEEEGGEKEEEEGGGGGG 874
+ +R K++EK+K K+ R R KK E + KK +++ K++E
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQ 196
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR- 933
R+ R GK EE +E + ++ S R+ RR ++
Sbjct: 197 RQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKP 256
Query: 934 -----------RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGK 982
R +R R R R R + K ++ + + GK
Sbjct: 257 DPSPSMASPETRESSKRTETRPRTSLRPPSARPASARPAPPRVKRKEIVTVLQDAQGVGK 316
Query: 983 T----KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
E KK E+E+++ + + + E++ E+ +++ + +K
Sbjct: 317 IVSNVILEGKKSEDEDDENFVVEAAAQAPDIVAGGEDEAEDGEQQGGLVQK 367
Score = 49.5 bits (118), Expect = 7e-06
Identities = 41/225 (18%), Positives = 80/225 (35%), Gaps = 23/225 (10%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEE---EEGGGGGGR 875
++R R + K KK ++ +++ +EE++++ E +G +E EE
Sbjct: 164 KKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDD 223
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
+ R + EE++ ++ RR K+ + R +R R R R
Sbjct: 224 GKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTETRPRTSLR 283
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKK---------KEEKKKEEEEK-------KKK 979
R R R +R+ ++ + E KK E+E+ +
Sbjct: 284 PPSARPASARPAPPRVKRKEIVTVLQDAQGVGKIVSNVILEGKKSEDEDDENFVVEAAAQ 343
Query: 980 EGKTKKEEKKKEEEEEKK----KKKKEEEKEEEEKKEEEEKEEEE 1020
+ + E+ E++ +K E +KE E E E
Sbjct: 344 APDIVAGGEDEAEDGEQQGGLVQKILETKKEYETGSGSASPGETE 388
Score = 43.0 bits (101), Expect = 7e-04
Identities = 22/72 (30%), Positives = 42/72 (58%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E + + K+ E+ K KTK ++ K E ++++K+KE+ KEE++KK+E+ KEE
Sbjct: 68 ESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Query: 1019 EEKKRRRIRRKR 1030
+ ++ + K
Sbjct: 128 PKDRKPKEEAKE 139
Score = 41.4 bits (97), Expect = 0.002
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
S +E K+ E+ + K K K K E KEEE+EK++ K+E++K++E+ KEE
Sbjct: 69 SKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEP 128
Query: 1015 EKEEEEKKRRRIRRKR 1030
+ + +++ + R +
Sbjct: 129 KDRKPKEEAKEKRPPK 144
>gnl|CDD|217037 pfam02443, Circo_capsid, Circovirus capsid protein. Circoviruses
are small circular single stranded viruses. This family
is the capsid protein from viruses such as porcine
circovirus and beak and feather disease virus. These
proteins are about 220 amino acids long.
Length = 237
Score = 65.5 bits (160), Expect = 1e-11
Identities = 26/41 (63%), Positives = 27/41 (65%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R R RRR RR RRRRRRRR RRR RRRR RRR R +
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNR 41
Score = 64.8 bits (158), Expect = 2e-11
Identities = 27/41 (65%), Positives = 27/41 (65%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
R R RRR RR RRRRRRRR RRR RRRR RRR R R
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNR 41
Score = 64.8 bits (158), Expect = 2e-11
Identities = 27/41 (65%), Positives = 27/41 (65%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R R RRR RR RRRRRRRR RRR RRRR RRR R R
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNR 41
Score = 63.2 bits (154), Expect = 6e-11
Identities = 26/41 (63%), Positives = 26/41 (63%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R RRR RR RRRRRRRR RRR RRRR RRR R R
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNR 41
Score = 62.8 bits (153), Expect = 9e-11
Identities = 26/41 (63%), Positives = 26/41 (63%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R R RRR R RRRRRRRR RRR RRRR RRR R R
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNR 41
Score = 62.1 bits (151), Expect = 2e-10
Identities = 26/41 (63%), Positives = 26/41 (63%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
R R RR RR RRRRRRRR RRR RRRR RRR R R
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNR 41
Score = 61.7 bits (150), Expect = 2e-10
Identities = 26/41 (63%), Positives = 26/41 (63%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
R R RR RR RRRRRRRR RRR RRRR RRR R R
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNR 41
Score = 61.7 bits (150), Expect = 2e-10
Identities = 27/47 (57%), Positives = 27/47 (57%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R R R RR RRRRRRRR RRR RRRR RRR R R R R
Sbjct: 3 RIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNRIYTFRLTR 49
Score = 61.3 bits (149), Expect = 3e-10
Identities = 26/41 (63%), Positives = 26/41 (63%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
R RRR RR RRRRRRRR RRR RRRR RRR R R
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNR 41
Score = 60.1 bits (146), Expect = 8e-10
Identities = 26/49 (53%), Positives = 28/49 (57%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
R R R++ RR RRRR RRR RRR RRRR RRR R R R R
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNRIYTFRLTR 49
Score = 59.4 bits (144), Expect = 1e-09
Identities = 27/49 (55%), Positives = 28/49 (57%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
R + RRR RR R RRRRRR RRR RRRR RRR R R R R
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNRIYTFRLTR 49
Score = 59.4 bits (144), Expect = 1e-09
Identities = 26/49 (53%), Positives = 27/49 (55%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
R R +RR R RR RRRRR RRR RRRR RRR R R R R
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNRIYTFRLTR 49
Score = 57.1 bits (138), Expect = 8e-09
Identities = 26/49 (53%), Positives = 27/49 (55%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R R RR+ RR RRRR RR RRR RRRR RRR R R R R
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHRTNRIYTFRLTR 49
Score = 55.1 bits (133), Expect = 3e-08
Identities = 22/34 (64%), Positives = 23/34 (67%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R R RRR RR RRRRRRRR RRR RRRR +
Sbjct: 1 RFRIRRRYRRPRRRRRRRRHWRRRYRRRRLHINR 34
Score = 48.2 bits (115), Expect = 7e-06
Identities = 26/60 (43%), Positives = 26/60 (43%), Gaps = 13/60 (21%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
R RRR RR RRRRRR RRR RRRR RRR R R R R
Sbjct: 3 RIRRRYRR-------------PRRRRRRRRHWRRRYRRRRLHINRRRHRTNRIYTFRLTR 49
Score = 35.9 bits (83), Expect = 0.072
Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 15/54 (27%)
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
RRRRRRRR RRR R++R RRR R R R R
Sbjct: 11 PRRRRRRRR---------------HWRRRYRRRRLHINRRRHRTNRIYTFRLTR 49
Score = 31.6 bits (72), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 809 QIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRR 844
+IR R RRRRRR+ + + +R RRR R
Sbjct: 3 RIRRRYRRPRRRRRRRRHWRRRYRRRRLHINRRRHR 38
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors including
the Pad-1 protein (N. crassa), CAPER (M. musculus) and
CC1.3 (H.sapiens). These proteins are characterized by
an N-terminal arginine-rich, low complexity domain
followed by three (or in the case of 4 H. sapiens
paralogs, two) RNA recognition domains (rrm: pfam00706).
These splicing factors are closely related to the U2AF
splicing factor family (TIGR01642). A homologous gene
from Plasmodium falciparum was identified in the course
of the analysis of that genome at TIGR and was included
in the seed.
Length = 457
Score = 68.0 bits (166), Expect = 1e-11
Identities = 34/86 (39%), Positives = 40/86 (46%)
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
R R R G+ + ++ + G R RRR + R RSRRRR R R RR R R R R R
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEE 962
R R RR RR R E E
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAE 86
Score = 65.7 bits (160), Expect = 5e-11
Identities = 35/92 (38%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
R R R R + K GR R RR+ R R R RR R R R RR R R R
Sbjct: 1 RYRDRERGRLRNDTRRSDK-----GRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSP 55
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
R R R R RR RR R+ KE E ++
Sbjct: 56 NRYYRPRGDRSYRRDDRRSGRNTKEPLTEAER 87
Score = 60.3 bits (146), Expect = 2e-09
Identities = 29/85 (34%), Positives = 40/85 (47%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
R R R RR + R RRR R R R RRRR R R RR R R R R R R +
Sbjct: 7 RGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRPRGDRS 66
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKT 983
++++ KE + +++ +T
Sbjct: 67 YRRDDRRSGRNTKEPLTEAERDDRT 91
Score = 58.8 bits (142), Expect = 8e-09
Identities = 33/85 (38%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRR-------RRRRRRRRRRRRRRRR 942
+ +E G R RR + R R RR R R R RRRR RR R R R R R
Sbjct: 2 YRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYRP 61
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKE 967
R R RR RRSG+ +E + E
Sbjct: 62 RGDRSYRRDDRRSGRNTKEPLTEAE 86
Score = 57.6 bits (139), Expect = 2e-08
Identities = 25/87 (28%), Positives = 35/87 (40%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
R R R R R R RR + R R RRR R R R RRRR R G+ + +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKK 998
++ + + KE E ++
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAER 87
Score = 56.8 bits (137), Expect = 3e-08
Identities = 29/86 (33%), Positives = 37/86 (43%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
R R ++R R R R + R R RRR R R R RRRR R R RR R R R +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKE 986
+ + + KE T+ E
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAE 86
Score = 54.1 bits (130), Expect = 2e-07
Identities = 27/90 (30%), Positives = 38/90 (42%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
R R R R R RR + R R RRR R R R RRRR R R RR + +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
+ ++ G+ KE + E +++
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAERDDR 90
Score = 41.0 bits (96), Expect = 0.003
Identities = 27/112 (24%), Positives = 35/112 (31%), Gaps = 22/112 (19%)
Query: 839 GRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGG 898
R R + ++ ++ E + R R RRRR
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRS------RDRSRRRRD--------------- 39
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
R R +R RSR R R R R R RR RR R + R R
Sbjct: 40 -RDYYRGRRGRSRSRSPNRYYRPRGDRSYRRDDRRSGRNTKEPLTEAERDDR 90
Score = 41.0 bits (96), Expect = 0.003
Identities = 14/90 (15%), Positives = 34/90 (37%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
R R R R R R RR + R + + ++++ + + + G+++ +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
+ + +++ +E E E R
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAERDDR 90
Score = 38.7 bits (90), Expect = 0.015
Identities = 11/90 (12%), Positives = 30/90 (33%)
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
R R R R R R RR + + + ++ ++ + + + + +
Sbjct: 1 RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR 60
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+ + + + +E E ++ R
Sbjct: 61 PRGDRSYRRDDRRSGRNTKEPLTEAERDDR 90
Score = 35.3 bits (81), Expect = 0.17
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 16/105 (15%)
Query: 813 SRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGG 872
R+R R R ++ +K + + R R R R ++ ++ +
Sbjct: 2 YRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRR-------------- 47
Query: 873 GGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRR 917
R R R + + RR R K + R R
Sbjct: 48 --GRSRSRSPNRYYRPRGDRSYRRDDRRSGRNTKEPLTEAERDDR 90
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional.
Length = 482
Score = 67.3 bits (165), Expect = 2e-11
Identities = 38/70 (54%), Positives = 53/70 (75%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
S K ++ +K E+ +K+ EE+KK++ K KKKEEEEE++K+KKEEEKEEEE++
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 1013 EEEKEEEEKK 1022
EEEKEEEE+K
Sbjct: 463 EEEKEEEEEK 472
Score = 64.6 bits (158), Expect = 2e-10
Identities = 33/73 (45%), Positives = 57/73 (78%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+ ++ ++ +K EKK+EEE+K+KK+ ++K++EEEEEK+KK++E+E+EEEE
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 1011 KEEEEKEEEEKKR 1023
+EE+E+EEE+KK+
Sbjct: 463 EEEKEEEEEKKKK 475
Score = 59.9 bits (146), Expect = 4e-09
Identities = 29/65 (44%), Positives = 55/65 (84%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+ E+ +KK E++K+E++KK GK K+EE+++E+E+++++K++EEE+ EEEK+EEEEK
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Query: 1017 EEEEK 1021
++++
Sbjct: 473 KKKQA 477
Score = 55.3 bits (134), Expect = 1e-07
Identities = 28/61 (45%), Positives = 50/61 (81%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
K E++ E++K+EKKK+ KKKE + ++E++KKEEE+E+++++ EEEKEEEE+K++++
Sbjct: 417 EKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQ 476
Query: 1016 K 1016
Sbjct: 477 A 477
Score = 54.5 bits (132), Expect = 2e-07
Identities = 28/66 (42%), Positives = 48/66 (72%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+EE E ++ K+ ++ +K K ++EEKK+++++ KKKEEE+EEE++K+EEEK
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 1017 EEEEKK 1022
EEEE++
Sbjct: 456 EEEEEE 461
Score = 54.2 bits (131), Expect = 2e-07
Identities = 23/66 (34%), Positives = 45/66 (68%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
EEE + K+ +K KK + ++++++E++E+KKK ++KEEEE++E+E+KEEE
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 1020 EKKRRR 1025
+++
Sbjct: 455 KEEEEE 460
Score = 51.8 bits (125), Expect = 1e-06
Identities = 19/61 (31%), Positives = 46/61 (75%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
+ ++R K+E++++ +KK+EEEE++K++ + +KEE+++E EEEK++++++++
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 1005 K 1005
K
Sbjct: 475 K 475
Score = 50.7 bits (122), Expect = 3e-06
Identities = 20/66 (30%), Positives = 45/66 (68%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EEE + KK ++ KK K +K+ +++++E++KK ++++EEEE+++E+++EE
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 1019 EEKKRR 1024
+E++
Sbjct: 455 KEEEEE 460
Score = 49.9 bits (120), Expect = 5e-06
Identities = 21/61 (34%), Positives = 47/61 (77%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
+ ++R +++E+++K KKKEEEE+++KE K +++E+++EE EE+K++++E++K
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 1006 E 1006
+
Sbjct: 475 K 475
Score = 49.9 bits (120), Expect = 5e-06
Identities = 23/63 (36%), Positives = 48/63 (76%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
+ + +EE++E+KKK K++EE++++E + K+EEK++EEEE +++K++EEEK++
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 1008 EEK 1010
++
Sbjct: 475 KQA 477
Score = 49.1 bits (118), Expect = 1e-05
Identities = 18/61 (29%), Positives = 43/61 (70%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
+ ++R ++ K+ +KK+EE+++E+E+K++++ + ++E ++++EEEE+KKK
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 1000 K 1000
K
Sbjct: 475 K 475
Score = 48.8 bits (117), Expect = 1e-05
Identities = 18/61 (29%), Positives = 43/61 (70%)
Query: 938 RRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK 997
+ ++R ++ ++ ++++++EE++KE++E++K+E + + EE+K+EEEE+KK
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 998 K 998
K
Sbjct: 475 K 475
Score = 48.4 bits (116), Expect = 1e-05
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
KK K KK +K E++ E++KK+K+++ +KKEEEE+EE+EKK
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 48.4 bits (116), Expect = 2e-05
Identities = 17/61 (27%), Positives = 44/61 (72%)
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
+ ++R ++ +++ +++E+++EE+K+++EE+K++E + +EEK++EEE++K
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 997 K 997
K
Sbjct: 475 K 475
Score = 48.0 bits (115), Expect = 2e-05
Identities = 23/61 (37%), Positives = 44/61 (72%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
+ ++R ++ K++ KKKEE+++EE+EKK++E + ++EE ++E+EEE++KKK
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 1001 K 1001
K
Sbjct: 475 K 475
Score = 48.0 bits (115), Expect = 2e-05
Identities = 21/61 (34%), Positives = 44/61 (72%)
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+ ++R + K+++ KK+E+++EEE++KK+E K ++EE+ +EE+EE+++KKK
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 1002 E 1002
+
Sbjct: 475 K 475
Score = 46.1 bits (110), Expect = 8e-05
Identities = 18/63 (28%), Positives = 45/63 (71%)
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
+ ++R +++++ K+++++EEEEK+KKE + ++EE++ EEE+E++++KK+
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 1003 EEK 1005
++
Sbjct: 475 KQA 477
Score = 44.1 bits (105), Expect = 3e-04
Identities = 20/61 (32%), Positives = 43/61 (70%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK 989
+ ++R ++ ++++ ++ +EEEEE++KKEE+K+EEEE+ ++E + ++E+KK
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 990 K 990
K
Sbjct: 475 K 475
Score = 43.4 bits (103), Expect = 5e-04
Identities = 22/61 (36%), Positives = 43/61 (70%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
+ ++R ++ ++++ + +EEEEEEK+K+E++KEEEE++ +E K ++EEKKK
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 991 E 991
+
Sbjct: 475 K 475
Score = 42.6 bits (101), Expect = 9e-04
Identities = 17/60 (28%), Positives = 39/60 (65%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+EE E K K+ KK E+ EKK++++++EK+++ ++++EEEE+++ + ++
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 42.2 bits (100), Expect = 0.001
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRS 883
K+ KK K+ ++R ++++EKKKK ++ E+EEEE + +
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 884 GKEEEEKKKKEGG 896
+E+EE+++K+
Sbjct: 463 EEEKEEEEEKKKK 475
Score = 39.9 bits (94), Expect = 0.006
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 823 RRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRR 882
KK KK K ++R +K+E+KKK +++ E+EEE+ +
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEK---EKKEEEKEEEE 459
Query: 883 SGKEEEEKKKKEGGGG 898
EEE+++++E
Sbjct: 460 EEAEEEKEEEEEKKKK 475
Score = 39.5 bits (93), Expect = 0.009
Identities = 17/61 (27%), Positives = 43/61 (70%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK 988
+ ++R ++ ++++ +++ +EEEE+EKK+EEK++EEEE ++++ + ++++K
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 989 K 989
K
Sbjct: 475 K 475
Score = 38.4 bits (90), Expect = 0.021
Identities = 15/61 (24%), Positives = 39/61 (63%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
+ ++R ++ ++++ +++ ++E++EE+K+EE+++ EEEK+++E K K
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 985 K 985
K
Sbjct: 475 K 475
Score = 37.2 bits (87), Expect = 0.042
Identities = 15/61 (24%), Positives = 38/61 (62%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT 983
+ ++R ++ ++++ +++ KE++EEEK++EE++ EEE+++++E K
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 984 K 984
K
Sbjct: 475 K 475
Score = 33.7 bits (78), Expect = 0.52
Identities = 13/61 (21%), Positives = 37/61 (60%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
+ ++R ++ ++++ +++ K+EEE+E+++EE ++E+EE+++K+
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 982 K 982
K
Sbjct: 475 K 475
Score = 31.8 bits (73), Expect = 2.3
Identities = 15/61 (24%), Positives = 37/61 (60%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
+ ++R ++ ++++ +++ + ++ ++EEEEE+ +EEK++EEE+KK
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKK 474
Query: 978 K 978
K
Sbjct: 475 K 475
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner membrane
complex of itself with TolQ and TolR to the outer
membrane complex of TolB and OprL (also called Pal). Most
of the length of the protein consists of low-complexity
sequence that may differ in both length and composition
from one species to another, complicating efforts to
discriminate TolA (the most divergent gene in the tol-pal
system) from paralogs such as TonB. Selection of members
of the seed alignment and criteria for setting scoring
cutoffs are based largely conserved operon struction.
//The Tol-Pal complex is required for maintaining outer
membrane integrity. Also involved in transport (uptake)
of colicins and filamentous DNA, and implicated in
pathogenesis. Transport is energized by the proton motive
force. TolA is an inner membrane protein that interacts
with periplasmic TolB and with outer membrane porins
ompC, phoE and lamB [Transport and binding proteins,
Other, Cellular processes, Pathogenesis].
Length = 346
Score = 64.9 bits (158), Expect = 6e-11
Identities = 31/115 (26%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
++ + R+++ ++ ++R + R++ +R ++ K+ E+ K+ EEK+K+ EE
Sbjct: 64 KKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEE 123
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K K+ E K K E E +KK K+E +K+ EE+ + + E +KK ++K
Sbjct: 124 AKAKQ---AAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKA 175
Score = 57.9 bits (140), Expect = 1e-08
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 9/136 (6%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R ++++K + + R ++ ++ ++R + R++ +R + ++ ++ K
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK 112
Query: 958 EEEEEEKKKEEKK-KEEEEKKKK-----EGKTKKEEKKKEEEEEKKKKKKEEEKEEEE-- 1009
+ EE++K+ EE K K+ E K K E K K+E KK+ EEE K K E +K+ E
Sbjct: 113 QAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAK 172
Query: 1010 -KKEEEEKEEEEKKRR 1024
K E E K + E K +
Sbjct: 173 KKAEAEAKAKAEAKAK 188
Score = 56.0 bits (135), Expect = 5e-08
Identities = 35/191 (18%), Positives = 83/191 (43%), Gaps = 14/191 (7%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRR 904
G ++ + +++++ +KE+E R+++ + +E E+++ E + +R
Sbjct: 46 GAVAQQANRIQQQKKPAAKKEQE--------RQKKLEQQAEEAEKQRAAEQARQKELEQR 97
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
++ ++ + ++ ++++ + ++ + + ++ + + K+ EEE K
Sbjct: 98 AAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
Query: 965 KKEE---KKKEEEEKKKKEGKTKKE---EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
K KKK E KKK E + K + + K + EE K K + + K E + E E
Sbjct: 158 AKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEA 217
Query: 1019 EEKKRRRIRRK 1029
RK
Sbjct: 218 AAAAAAEAERK 228
Score = 52.5 bits (126), Expect = 6e-07
Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 17/159 (10%)
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR--RRRRRRRRRRRR 942
KE+E +KK E ++ +K+R + + R + +R + ++ + ++ ++++
Sbjct: 65 KEQERQKKLE----QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQ 120
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEE--KKKEEEEKKKK---EGKTKKEEKKKEEEEEKK 997
+ ++ K E E EKK +E KK+ EEE K K E K K E KK+ E E K
Sbjct: 121 AEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAK 180
Query: 998 ------KKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K K EE + + + + + E +
Sbjct: 181 AKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAA 219
Score = 46.8 bits (111), Expect = 4e-05
Identities = 36/181 (19%), Positives = 73/181 (40%), Gaps = 18/181 (9%)
Query: 846 KKEEEKKKKKEEEEEGGEKE--EEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRR 903
KKE+E++KK E++ E EK+ E+ R++ + E+ K+ E +
Sbjct: 64 KKEQERQKKLEQQAEEAEKQRAAEQ------ARQKELEQRAAAEKAAKQAE------QAA 111
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
++ + ++ + ++ + + ++ + +++ + + K++ E
Sbjct: 112 KQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEA 171
Query: 964 KKKEE----KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
KKK E K E + K K E K E K + + K E E E E K +E
Sbjct: 172 KKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADE 231
Query: 1020 E 1020
Sbjct: 232 A 232
Score = 41.4 bits (97), Expect = 0.002
Identities = 28/196 (14%), Positives = 79/196 (40%), Gaps = 18/196 (9%)
Query: 814 RNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
R ++ ++ +K++E +KK +++ ++R ++ +K+ ++ ++ E
Sbjct: 54 RIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAE----- 108
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
+ ++ K+ EE K K+ +++ ++ + +++ +
Sbjct: 109 -QAAKQAEEKQKQAEEAKAKQ----------AAEAKAKAEAEAEKKAKEEAKKQAEEEAK 157
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
+ +++ +++ + + E + K K E+ K + E K K E K E
Sbjct: 158 AKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKA--KAAAEAAAKAEA 215
Query: 994 EEKKKKKKEEEKEEEE 1009
E E E++ +E
Sbjct: 216 EAAAAAAAEAERKADE 231
Score = 41.4 bits (97), Expect = 0.002
Identities = 14/70 (20%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE-EEEKKEEEEKEEEE 1020
++ +++++ KK++ + KK E++ EE E+++ ++ +KE E+ E+ ++ E
Sbjct: 49 AQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAE 108
Query: 1021 KKRRRIRRKR 1030
+ ++ K+
Sbjct: 109 QAAKQAEEKQ 118
Score = 36.4 bits (84), Expect = 0.077
Identities = 30/201 (14%), Positives = 75/201 (37%), Gaps = 23/201 (11%)
Query: 795 QLTKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKK 854
Q K P K Q +L + ++R ++ +K+ ++R + K+ E+ K
Sbjct: 56 QQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQR---AAAEKAAKQAEQAAK 112
Query: 855 KEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRR 914
+ EE++ K+ EE K+ E K K +K + ++++
Sbjct: 113 QAEEKQ---KQAEE-------------AKAKQAAEAKAKA----EAEAEKKAKEEAKKQA 152
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEE 974
+ + +++ +++ + + + + + K + E K K + +
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAK 212
Query: 975 EKKKKEGKTKKEEKKKEEEEE 995
+ + E ++K +E E
Sbjct: 213 AEAEAAAAAAAEAERKADEAE 233
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 63.3 bits (155), Expect = 5e-10
Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 8/145 (5%)
Query: 848 EEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKR 907
EEE+ +K+E + E E+ + E + EEE K +
Sbjct: 39 EEEEARKEEAKREAEEEAKAE--------AEEAAAAEAEEEAKAEAAAAAPAEEAAEAAA 90
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
R R RR + ++ ++++ + ++++ +R+ + + + K
Sbjct: 91 AAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGR 150
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEE 992
+++ ++KK+ K K EK E
Sbjct: 151 RRRRGRRRRRKKKKKQKPTEKIPRE 175
Score = 57.9 bits (141), Expect = 2e-08
Identities = 21/140 (15%), Positives = 54/140 (38%), Gaps = 3/140 (2%)
Query: 858 EEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRR 917
EEE KEE + + + E EE+ K E ++ +
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAE---AAAAAPAEEAAEAAAAAEAA 95
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
R R RR + ++ ++++ + ++++ ++ K+ + K +
Sbjct: 96 ARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRG 155
Query: 978 KKEGKTKKEEKKKEEEEEKK 997
++ + KK+++K E+ ++
Sbjct: 156 RRRRRKKKKKQKPTEKIPRE 175
Score = 57.2 bits (139), Expect = 4e-08
Identities = 19/140 (13%), Positives = 49/140 (35%), Gaps = 4/140 (2%)
Query: 886 EEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
EEEE +K+E +R ++ + + +
Sbjct: 39 EEEEARKEE----AKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEA 94
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
R + E + K +K ++++ K + K K + + + K K + +
Sbjct: 95 AARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRR 154
Query: 1006 EEEEKKEEEEKEEEEKKRRR 1025
++++++K++ +K R
Sbjct: 155 GRRRRRKKKKKQKPTEKIPR 174
Score = 56.4 bits (137), Expect = 7e-08
Identities = 24/142 (16%), Positives = 45/142 (31%)
Query: 887 EEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
EEE+ +KE K + R
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARP 98
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
R + + KK KKK+ + KKK+ K K K + K ++++ +
Sbjct: 99 AEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRRRRGRRR 158
Query: 1007 EEEKKEEEEKEEEEKKRRRIRR 1028
+KK++++ E+ + I
Sbjct: 159 RRKKKKKQKPTEKIPREVVIPE 180
Score = 49.1 bits (118), Expect = 1e-05
Identities = 18/73 (24%), Positives = 31/73 (42%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EEEE K++ +++ EEE K + E E +++ + E EE E E +
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARP 98
Query: 1018 EEEKKRRRIRRKR 1030
E++ R
Sbjct: 99 AEDEAARPAEAAA 111
Score = 46.4 bits (111), Expect = 8e-05
Identities = 23/73 (31%), Positives = 31/73 (42%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+E E K EEEE +K+E K + EE+ K E EE + EEE + E +E
Sbjct: 25 KELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEE 84
Query: 1018 EEEKKRRRIRRKR 1030
E R
Sbjct: 85 AAEAAAAAEAAAR 97
Score = 45.2 bits (108), Expect = 2e-04
Identities = 14/104 (13%), Positives = 34/104 (32%)
Query: 815 NRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGG 874
+ +E + R + + + ++++G
Sbjct: 71 EAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKK 130
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRR 918
++ +R+ G + + K RRRRRKK+++ + R
Sbjct: 131 KKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPR 174
Score = 43.3 bits (103), Expect = 7e-04
Identities = 16/104 (15%), Positives = 37/104 (35%)
Query: 814 RNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
+ ++ + R + + + + K+++
Sbjct: 71 EAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKK 130
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRR 917
+ +R+ R GK + K + GRRRRR+KK+++ + R
Sbjct: 131 KKPKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPR 174
Score = 39.8 bits (94), Expect = 0.009
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
E+ K+ E K ++EE +KEE + + +++ + E EE E EE+ + E
Sbjct: 22 EKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAP 81
Query: 1027 RRKR 1030
+
Sbjct: 82 AEEA 85
Score = 37.5 bits (88), Expect = 0.044
Identities = 22/62 (35%), Positives = 29/62 (46%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
K+ KE EK K+ G K EEEE +K++ + E EEE K E EE E +
Sbjct: 11 KELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEE 70
Query: 1024 RR 1025
Sbjct: 71 EA 72
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 60.9 bits (148), Expect = 6e-10
Identities = 28/123 (22%), Positives = 65/123 (52%), Gaps = 18/123 (14%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE--EKKKEEKKKEEEEKKK 978
++ +R+++ ++ ++++ R + R R+R KE+ EE +K ++ K+ K K
Sbjct: 95 AKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHK 154
Query: 979 KEG----------------KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
KE +EE KK +E + KK K+++++ EE++ ++ K+++E++
Sbjct: 155 KEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEE 214
Query: 1023 RRR 1025
R+
Sbjct: 215 ERK 217
Score = 49.0 bits (117), Expect = 5e-06
Identities = 23/105 (21%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEE--EKKKKEGKTKKEEKKK 990
++ +R+++ ++ ++++ R + EE E +++ K+K EE +K ++ ++ K K
Sbjct: 95 AKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHK 154
Query: 991 EEEEEK-----KKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+E E K E +E+ ++ +E E KK ++ ++KR
Sbjct: 155 KEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKR 199
Score = 37.8 bits (88), Expect = 0.021
Identities = 33/173 (19%), Positives = 80/173 (46%), Gaps = 29/173 (16%)
Query: 812 LSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGG 871
LS + R+++ +K EEK+K +R + R + E ++ KE+ EE ++ ++
Sbjct: 93 LSAKQAQRQKKLQKLLEEKQKQERE-----KEREEAELRQRLAKEKYEEWCRQKAQQ--- 144
Query: 872 GGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRR 931
++R K+E + G + R + ++R + ++ ++++++R
Sbjct: 145 ----AAKQRTPKHKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKRE 200
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
RR++R+ K++EEEE+K++ ++ ++ K + + K
Sbjct: 201 EERRKQRK-----------------KQQEEEERKQKAEEAWQKWMKNVKQRPK 236
Score = 37.0 bits (86), Expect = 0.032
Identities = 34/179 (18%), Positives = 80/179 (44%), Gaps = 32/179 (17%)
Query: 821 RRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRR 880
+ R+ +E + W K+ +++KK ++ E +K+E
Sbjct: 80 KLERQAQEAYENWLSA----------KQAQRQKKLQKLLEEKQKQE-------------- 115
Query: 881 RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
R +EE E +++ R+K +++ ++R+ + ++ + R
Sbjct: 116 REKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNV 175
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
+ ++R +E E +K K++++K EEE++K+ K ++EE++K++ EE +K
Sbjct: 176 SQEEAKKRL--------QEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 37.0 bits (86), Expect = 0.036
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE--E 1008
+ R +E E ++ +++++ +K E K K+E +K+ EE E +++ +E+ EE
Sbjct: 80 KLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCR 139
Query: 1009 EKKEEEEKEEEEKKRRR 1025
+K ++ K+ K ++
Sbjct: 140 QKAQQAAKQRTPKHKKE 156
Score = 30.9 bits (70), Expect = 2.7
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query: 954 RSGKEEEEEEKKKEE-----KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
RS KE + E + +E K+ + +KK + EEK+K+E E+++++ + ++ +
Sbjct: 74 RSLKEVKLERQAQEAYENWLSAKQAQRQKKLQ--KLLEEKQKQEREKEREEAELRQRLAK 131
Query: 1009 EKKEE--EEKEEEEKKRR 1024
EK EE +K ++ K+R
Sbjct: 132 EKYEEWCRQKAQQAAKQR 149
Score = 30.5 bits (69), Expect = 3.8
Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK---KEEEKEEEEKKEEEEK 1016
++ K E++ +E + K + +KK ++ E+K+K+ KE E+ E ++ +EK
Sbjct: 74 RSLKEVKLERQAQEAYENWLSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEK 133
Query: 1017 EEE--EKKRRRIRRKR 1030
EE +K ++ ++R
Sbjct: 134 YEEWCRQKAQQAAKQR 149
>gnl|CDD|215824 pfam00260, Protamine_P1, Protamine P1.
Length = 51
Score = 54.9 bits (132), Expect = 9e-10
Identities = 34/50 (68%), Positives = 34/50 (68%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
R R R RSR R RRRRRR RRRRRR RRRRRR RRR RRRRRR
Sbjct: 2 RYRCCRSRSRSRCRRRRRRRCRRRRRRCCRRRRRRVGCCRRRYTRRRRRR 51
Score = 53.4 bits (128), Expect = 3e-09
Identities = 33/48 (68%), Positives = 33/48 (68%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R R RSR RRRRRRR RRRRRR RRRRRR RRR RRRRRR
Sbjct: 4 RCCRSRSRSRCRRRRRRRCRRRRRRCCRRRRRRVGCCRRRYTRRRRRR 51
Score = 53.0 bits (127), Expect = 4e-09
Identities = 33/50 (66%), Positives = 34/50 (68%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
R R + R RSR RR RRRR RRRRRR RRRRRR RRR RRRRRR
Sbjct: 2 RYRCCRSRSRSRCRRRRRRRCRRRRRRCCRRRRRRVGCCRRRYTRRRRRR 51
Score = 53.0 bits (127), Expect = 4e-09
Identities = 33/50 (66%), Positives = 34/50 (68%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R + RSR R RRRRRRR RRRRRR RRRRRR RRR RRRRRR
Sbjct: 2 RYRCCRSRSRSRCRRRRRRRCRRRRRRCCRRRRRRVGCCRRRYTRRRRRR 51
Score = 50.3 bits (120), Expect = 4e-08
Identities = 31/50 (62%), Positives = 32/50 (64%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
R R R + R RRR RRR RRRRRR RRRRRR RRR RRRRRR
Sbjct: 2 RYRCCRSRSRSRCRRRRRRRCRRRRRRCCRRRRRRVGCCRRRYTRRRRRR 51
Score = 48.7 bits (116), Expect = 1e-07
Identities = 28/46 (60%), Positives = 29/46 (63%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
+R R R R R R RRRRRRR RRRRRR RRRRRR RRR
Sbjct: 1 ARYRCCRSRSRSRCRRRRRRRCRRRRRRCCRRRRRRVGCCRRRYTR 46
Score = 41.4 bits (97), Expect = 5e-05
Identities = 26/37 (70%), Positives = 26/37 (70%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R R R R R R RRRRRRR RRRRRR RRRRRR G
Sbjct: 2 RYRCCRSRSRSRCRRRRRRRCRRRRRRCCRRRRRRVG 38
Score = 41.0 bits (96), Expect = 7e-05
Identities = 25/38 (65%), Positives = 25/38 (65%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R R R R R R RRRRRRR RRRRRR RRRRRR
Sbjct: 2 RYRCCRSRSRSRCRRRRRRRCRRRRRRCCRRRRRRVGC 39
Score = 35.3 bits (81), Expect = 0.008
Identities = 26/55 (47%), Positives = 28/55 (50%), Gaps = 16/55 (29%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
R RRRRRR R RRRR++ R RRRR RRR RRRRRR
Sbjct: 13 RCRRRRRR----------------RCRRRRRRCCRRRRRRVGCCRRRYTRRRRRR 51
Score = 35.3 bits (81), Expect = 0.009
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
RR RRR++R RRRR RRR RRRRRR
Sbjct: 19 RRRCRRRRRRCCRRRRRRVGCCRRRYTRRRRRR 51
Score = 33.7 bits (77), Expect = 0.024
Identities = 19/30 (63%), Positives = 20/30 (66%)
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R R R R R R RRRRRRR RRRRRR +
Sbjct: 2 RYRCCRSRSRSRCRRRRRRRCRRRRRRCCR 31
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked with
mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of it
enhances mitochondrial movement. The activity appears to
be mediated through binding the mitochondria to the actin
intermediate filaments (IFs).
Length = 349
Score = 60.7 bits (148), Expect = 1e-09
Identities = 54/229 (23%), Positives = 111/229 (48%), Gaps = 22/229 (9%)
Query: 816 RRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGR 875
+ +R K+K+ +++ R +KEEEK++++EEE + E + E+
Sbjct: 113 EAEAQEKREKQKKLREEIDE---FNEERIERKEEEKEREREEELKILEYQREKA-----E 164
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
R R +E +E+K++E R ++ + R R + R+ R++ +
Sbjct: 165 REEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEE 224
Query: 936 RRRRRR--------RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE 987
+RRR R + + R + + EEE E+++ +K+ E+E+ ++E K+
Sbjct: 225 AEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRM 284
Query: 988 KKKEEEEE------KKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K+ E E +K++++ E+EEE ++ E +EEE +++ RI +R
Sbjct: 285 KRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQARIEEER 333
Score = 57.6 bits (140), Expect = 1e-08
Identities = 64/254 (25%), Positives = 114/254 (44%), Gaps = 57/254 (22%)
Query: 820 RRRRRKKKEEKKKWKRRGGGRRRRRGKKE-----EEKKKKKEEEEEGGEKEEEEGGGGGG 874
R + EE+++ ++R RR G+ EE++K+++EE E +E E+
Sbjct: 49 EERLKALAEEEERERKRK--EERREGRAVLQEQIEEREKRRQEEYEERLQEREQ------ 100
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRR---RSRRRRSRRRRRRRRRRRR---- 927
+EE+E + +E +R +++K R R R+ + R R
Sbjct: 101 --MDEIIERIQEEDEAEAQE----KREKQKKLREEIDEFNEERIERKEEEKEREREEELK 154
Query: 928 -----RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK-----KKEEEEKK 977
R + R R RR R+ + R R ++EE E ++EE +EE +
Sbjct: 155 ILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYE 214
Query: 978 KKEGKTKKEEKKK------------EEEEEKKKKKKEEEKEEEEK---------KEEEEK 1016
+KE + +KEE +K EE+ E+K+++ +EE+ EEE E+EE
Sbjct: 215 RKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEEL 274
Query: 1017 EEEEKKRRRIRRKR 1030
E+E ++RR++R
Sbjct: 275 EQENAEKRRMKRLE 288
Score = 55.7 bits (135), Expect = 6e-08
Identities = 39/158 (24%), Positives = 81/158 (51%), Gaps = 8/158 (5%)
Query: 880 RRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
++R EE+E++++ R + R R R+ RR R + + R +RR+
Sbjct: 29 KKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQ 88
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE--------GKTKKEEKKKE 991
R + R + + +EE++ + ++K+E+++K ++E + K+EEK++E
Sbjct: 89 EEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKERE 148
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
EEE K + + EK E E++ E E+ E ++++ R +
Sbjct: 149 REEELKILEYQREKAEREEEREAERRERKEEKEREVAR 186
Score = 54.5 bits (132), Expect = 1e-07
Identities = 52/227 (22%), Positives = 107/227 (47%), Gaps = 34/227 (14%)
Query: 823 RRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRR 882
R + EEKK+ K RR + EE++ K EEE E+E + R+ RR
Sbjct: 22 RDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEE--ERERK---------RKEERR 70
Query: 883 SGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
G+ +++ +E R +RR+++ + R + R + + +R ++++
Sbjct: 71 EGRAVLQEQIEE----REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKL 126
Query: 943 RR------RRRRRRRRRRSGKEEEEEEK------KKEEKKKEEEEKKKKEGKTKKEEKKK 990
R R R+ +E EEE K +K E+++E E ++++ + K+ E +
Sbjct: 127 REEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVAR 186
Query: 991 EEEEEKKKKKKEEEKEE-------EEKKEEEEKEEEEKKRRRIRRKR 1030
++++ + + EE +E EE + +E ++E+E+ +R R+K+
Sbjct: 187 LRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQ 233
Score = 50.3 bits (121), Expect = 3e-06
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 11/188 (5%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR 878
R R ++ E+K+ K R R ++EE + ++EE +E +E R
Sbjct: 165 REEEREAERRERKEEKER---EVARLRAQQEEAEDEREELDELRADLYQE------EYER 215
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
+ R+ KEE EK++++ +R R + + R + R R R ++
Sbjct: 216 KERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELE 275
Query: 939 RRRRRRRRRRRRRRRRSGKE--EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
+ +RR +R RR ++ EE+EE++ E+++E EE ++ + + + + EEE ++
Sbjct: 276 QENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREEEAERQARIEEERQR 335
Query: 997 KKKKKEEE 1004
K+ E
Sbjct: 336 LLKEHAEA 343
Score = 48.8 bits (117), Expect = 1e-05
Identities = 41/216 (18%), Positives = 95/216 (43%), Gaps = 19/216 (8%)
Query: 806 CITQIRLSRNRRGRRRRRRKKKEEK--KKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGE 863
R+ + R +++E K + + + R ++ E K++K+ E
Sbjct: 130 IDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRA 189
Query: 864 KEEEEGGGGGGRRRRRRR---RSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRR 920
++EE R R+ +EE ++KE R++ + + +R R+++ +R R
Sbjct: 190 QQEEA------EDEREELDELRADLYQEEYERKE----RQKEKEEAEKRRRQKQELQRAR 239
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
+ + R + R R R ++ +E E+ + K + + E E++ +E
Sbjct: 240 EEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEE 299
Query: 981 GKTKKEEKKKEEEEEKKKKKKEE----EKEEEEKKE 1012
+ ++ +++EE EE ++ ++EE + EEE++
Sbjct: 300 KEERRAAEREEELEEGERLREEEAERQARIEEERQR 335
Score = 32.6 bits (75), Expect = 1.0
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E E+ +E +K K KE + EEKK+ + EEK+++++ +E EEE+ + +EEE
Sbjct: 1 ENSEELRELNEKLRAAKVNKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEE 60
Query: 1020 EKKRRRIRRKR 1030
+++R+ R+
Sbjct: 61 RERKRKEERRE 71
>gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional.
Length = 881
Score = 62.0 bits (151), Expect = 1e-09
Identities = 59/246 (23%), Positives = 87/246 (35%), Gaps = 76/246 (30%)
Query: 487 KGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNI-------CFTTIPV- 538
+ K KK Y+G V EP G Y +++ D SLYPSII++ NI F PV
Sbjct: 368 ENKSHKKQKYAGAFVKEPVPGAYR-WVVSFDLTSLYPSIIRQVNISPETIAGTFHVAPVH 426
Query: 539 -----------------------------------------------RMLQDSDITTLCE 551
+ML L +
Sbjct: 427 EYINKTAPRPSDEYSCSPNGWMYRKDIRGVIPTEIKKVFDQRKIYKKKMLAAERNAELIK 486
Query: 552 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLM---------QYDIRQKALK 602
+ E D+ P ++ + + KA +K SS + + Q A K
Sbjct: 487 TILEDLNDSVDTPIDVDYYFDFSDEFKAELKTLTKSSLKALLEECEKEIALCNTIQMARK 546
Query: 603 LTANSMYGCLGFPNSRFFAQPLAALVTAKGR----------EILLNTKSLVENLNYEVIY 652
+ NS+YG LG + R++ A +T G+ LN E+ +Y VIY
Sbjct: 547 ILINSLYGALGNEHFRYYDLRNAEAITLFGQLAIQWIERKMNEYLNKLCKTEDEDY-VIY 605
Query: 653 GDTDSL 658
GDTDS+
Sbjct: 606 GDTDSI 611
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 61.2 bits (148), Expect = 3e-09
Identities = 45/223 (20%), Positives = 84/223 (37%), Gaps = 16/223 (7%)
Query: 816 RRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGR 875
G + + E K + + G R+G++E E + + +E + GE E EE G
Sbjct: 662 ESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGET 721
Query: 876 RRR--------RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
G+E E++ + E G R+ + +
Sbjct: 722 EAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEG 781
Query: 928 RRR-----RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK---KK 979
+ + + + + + E + E K E E++ +
Sbjct: 782 EIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAEN 841
Query: 980 EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+G+ K++EK + EEE+EEEE++EEEE+EEEE++
Sbjct: 842 QGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEE 884
Score = 52.7 bits (126), Expect = 1e-06
Identities = 38/205 (18%), Positives = 80/205 (39%), Gaps = 1/205 (0%)
Query: 821 RRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRR 880
+ K E + + G + E E + +E EE E E E G R
Sbjct: 702 KEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDR 761
Query: 881 RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
+ + E E + + + + + + + + +
Sbjct: 762 KETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSET 821
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
+ + + E + E K++EK + G +++EE+++EEEEE+++++
Sbjct: 822 QADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDG-GDSEEEEEEEEEEEEEEEEE 880
Query: 1001 KEEEKEEEEKKEEEEKEEEEKKRRR 1025
+EEE+EEEE +E E E ++++
Sbjct: 881 EEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 41.5 bits (97), Expect = 0.003
Identities = 32/176 (18%), Positives = 59/176 (33%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRR 904
G+ EE + E+E E K E E G R+ + E E K+ G
Sbjct: 657 GENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
+ + R+ G+ E E ++
Sbjct: 717 HEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKE 776
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
++E + + E + +G E K + E E + +K E E + E + ++ E ++E
Sbjct: 777 DEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDET 832
Score = 37.7 bits (87), Expect = 0.038
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKE---EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E E E +E E + EG+ +E E ++E E E K + + E + E+K E+E E
Sbjct: 637 EAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGE 696
Query: 1018 EEEKKRR 1024
E + +
Sbjct: 697 GEIEAKE 703
Score = 37.3 bits (86), Expect = 0.055
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 954 RSGKEEEE----EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
R+G+E E E + EE E E++ + E K + E + + E K +++ E E E +E
Sbjct: 644 RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
Query: 1010 KKEEEEKEEEEKK 1022
+ E E EE +
Sbjct: 704 ADHKGETEAEEVE 716
Score = 36.9 bits (85), Expect = 0.062
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
K E+E E + E K+ + + + + E + E + E E++ + + EE EE E + E E
Sbjct: 689 RKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE 748
Query: 1016 KEEEEKKRRRIRRK 1029
E + + RK
Sbjct: 749 AEGKHEVETEGDRK 762
Score = 35.0 bits (80), Expect = 0.27
Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 31/178 (17%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
EE ++ + E E G E E G + G+ E+K ++ G G +
Sbjct: 645 TGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEA 704
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
+ G E+E E +
Sbjct: 705 DHKGETEAEEVEHEGETEAE------------------------------GTEDEGEIET 734
Query: 966 KEE-KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
EE ++ E+E + + EGK + E + +E E + + + E KE+E++ E + E+ E K
Sbjct: 735 GEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMK 792
Score = 30.3 bits (68), Expect = 6.6
Identities = 19/98 (19%), Positives = 40/98 (40%)
Query: 797 TKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKE 856
+A E G++ + + +K E + + + + + E+E + +
Sbjct: 783 IQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQ 842
Query: 857 EEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKE 894
E + EK + GGG G +EEEE++++E
Sbjct: 843 GEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEE 880
Score = 30.3 bits (68), Expect = 7.7
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
K + E + +T +E ++ E E + ++ E E+E + E + + E E
Sbjct: 632 KGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESE 682
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 59.7 bits (145), Expect = 8e-09
Identities = 45/233 (19%), Positives = 95/233 (40%), Gaps = 9/233 (3%)
Query: 804 KVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGE 863
K+ L R + + + ++ +R+ +R EEE ++ + EE
Sbjct: 685 KLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEE--- 741
Query: 864 KEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRR 923
EEE + R EEE + +E + + + + +
Sbjct: 742 LEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEE 801
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRR------RRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
RR R +RR R +E+ +E +++ E+ ++E E+
Sbjct: 802 LEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K+E + + EK++ E+E K+ ++++EE EEE ++ E E E +++ ++R +
Sbjct: 862 KEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914
Score = 56.6 bits (137), Expect = 6e-08
Identities = 55/291 (18%), Positives = 110/291 (37%), Gaps = 20/291 (6%)
Query: 737 SQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQL 796
S LA + + + L E L++ L+++ ++ + L+ E+ +QL
Sbjct: 661 SSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLE---------ELRRQL 711
Query: 797 TKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKE 856
+ + ++ + + R ++ EE+ + + R ++ EE+ + E
Sbjct: 712 EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771
Query: 857 EEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSR 916
E ++E EE +R+ + EE E++ RR
Sbjct: 772 EALAKLKEEIEE-----LEEKRQALQEELEELEEEL------EEAERRLDALERELESLE 820
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
+RR R + + + +EE EE + E+++ E+E K
Sbjct: 821 QRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELK 880
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
+ +E K + EE+ +E E E + K+E EK E +E E K E +
Sbjct: 881 ELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPEL 931
Score = 56.6 bits (137), Expect = 7e-08
Identities = 41/219 (18%), Positives = 74/219 (33%), Gaps = 14/219 (6%)
Query: 815 NRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGG 874
R + ++ E + R+ +EE + ++E EE E EE E
Sbjct: 213 ERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIE-- 270
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
+ +EE E+ ++E K+ R R
Sbjct: 271 -ELKSELEELREELEELQEEL------LELKEEIEELEGEISLLRERLEELENELEELEE 323
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
R + + + R + EE E+ + E+ KEE E+K + EE + E
Sbjct: 324 RLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALRE 383
Query: 995 E-----KKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
E + + E EE +++ E +E E+ R+
Sbjct: 384 ELAELEAELAEIRNELEELKREIESLEERLERLSERLED 422
Score = 54.7 bits (132), Expect = 2e-07
Identities = 37/225 (16%), Positives = 73/225 (32%), Gaps = 18/225 (8%)
Query: 814 RNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
+ + ++ E+ ++++ R K K+ +E E E+E
Sbjct: 196 EELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRL---- 251
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
+ +EE ++ E + ++ R +
Sbjct: 252 ------EEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEIS 305
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK----EEKKKEEEEKKKKEGKTKKEEKK 989
R R R KE+ E K++ E +E E+ + + K+E ++
Sbjct: 306 LLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEE 365
Query: 990 K----EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K EE E+ + EE E E + E + E E+ +R I
Sbjct: 366 KLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410
Score = 52.8 bits (127), Expect = 1e-06
Identities = 36/211 (17%), Positives = 74/211 (35%), Gaps = 15/211 (7%)
Query: 816 RRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGR 875
R R + E ++ +R + K E K++ +E E E E+ +
Sbjct: 305 SLLRERLEELENELEELEERL----EELKEKIEALKEELEERETLLEELEQLLAELEEAK 360
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
+ S EE ++ E R + R +R
Sbjct: 361 EELEEKLSALLEELEELFE----------ALREELAELEAELAEIRNELEELKREIESLE 410
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE-EKKKEEEE 994
R R R + + E EE + + EE +E EE +++ + + ++ + E
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470
Query: 995 EKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
E +++ + EKE + ++ E E++ +
Sbjct: 471 ELQEELQRLEKELSSLEARLDRLEAEQRASQ 501
Score = 51.3 bits (123), Expect = 3e-06
Identities = 28/135 (20%), Positives = 59/135 (43%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
GG R +R ++R + + + + + R RR+
Sbjct: 654 GGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE 713
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+ + EE K++ +EE E+ + + +EE ++ EEE ++ +++ EE EEE + EE
Sbjct: 714 LERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEA 773
Query: 1016 KEEEEKKRRRIRRKR 1030
+ +++ + KR
Sbjct: 774 LAKLKEEIEELEEKR 788
Score = 50.5 bits (121), Expect = 4e-06
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 1/156 (0%)
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
GG R ++R KE EE+ + + K ++ R RR+
Sbjct: 654 GGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEE 713
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK 988
R+ +R + + R EEE EE + EE ++ +E ++ E + + E+
Sbjct: 714 LERQLEELKRELAALEEELEQLQSRLEELEEELEELE-EELEELQERLEELEEELESLEE 772
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+ +E+ ++ +E+ + +E+ EE E+E EE +RR
Sbjct: 773 ALAKLKEEIEELEEKRQALQEELEELEEELEEAERR 808
Score = 48.6 bits (116), Expect = 2e-05
Identities = 25/132 (18%), Positives = 60/132 (45%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
R+ +K R+ R ++ + R+ + R + + R
Sbjct: 173 RKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLA 232
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+ +E +K+ E+ +EE + ++E + +EE ++ E+E ++ K + EE EE ++ +EE E
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292
Query: 1019 EEKKRRRIRRKR 1030
+++ + +
Sbjct: 293 LKEEIEELEGEI 304
Score = 48.2 bits (115), Expect = 2e-05
Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 6/170 (3%)
Query: 867 EEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRR 926
EE G + R+ K E ++ E K+ + R+ + R + +
Sbjct: 162 EEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAE 221
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
R + + R+ +EE EE +++ E+ ++E E+ K E + +E
Sbjct: 222 LRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELRE 281
Query: 987 EKKKEEEEEKKKKKKEEEKE------EEEKKEEEEKEEEEKKRRRIRRKR 1030
E ++ +EE + K++ EE E E +E E + EE ++R +++
Sbjct: 282 ELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEK 331
Score = 44.7 bits (106), Expect = 3e-04
Identities = 43/213 (20%), Positives = 83/213 (38%), Gaps = 9/213 (4%)
Query: 813 SRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGG 872
SRN+R ++R+ KE +++ + +EE K K E EE
Sbjct: 656 SRNKRSSLAQKRELKELEEE---LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQL- 711
Query: 873 GGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
R+ K E ++E + R + + R
Sbjct: 712 --EELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELES 769
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
+ + +R+ + EE EE+ +E +++ + +++ E ++ E+ ++E
Sbjct: 770 LEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE 829
Query: 993 EEEKKKKK---KEEEKEEEEKKEEEEKEEEEKK 1022
EE +++ +E+ E EE+ EE EKE EE K
Sbjct: 830 IEELEEEIEELEEKLDELEEELEELEKELEELK 862
Score = 43.9 bits (104), Expect = 5e-04
Identities = 37/195 (18%), Positives = 79/195 (40%), Gaps = 6/195 (3%)
Query: 838 GGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGG 897
GG R +R ++++ K+ EEE + + E + + RS ++ E+ +++
Sbjct: 654 GGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ--- 710
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R+ R + + + R + R
Sbjct: 711 -LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELES 769
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE--EEE 1015
EE K KEE ++ EE+++ + + ++ E++ EE E + + E + E+++E E+E
Sbjct: 770 LEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE 829
Query: 1016 KEEEEKKRRRIRRKR 1030
EE E++ + K
Sbjct: 830 IEELEEEIEELEEKL 844
Score = 43.2 bits (102), Expect = 7e-04
Identities = 49/271 (18%), Positives = 107/271 (39%), Gaps = 18/271 (6%)
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRR 820
L++ L+ + E +++++ L+ E+ ++L E +I +R
Sbjct: 741 ELEEELEELEEELEELQERLE---------ELEEELESLEEALAKLKEEIEELEEKRQAL 791
Query: 821 RRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRR 880
+ ++ EE+ + R R + E+++++ E+E E E+E EE +
Sbjct: 792 QEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEEL-----EEKLDE 846
Query: 881 RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
EE EK+ +E +K + + R +
Sbjct: 847 LEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEE 906
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK--K 998
+ R R + + E E + +EE ++E E+ + E + + E ++E E
Sbjct: 907 IEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNL 966
Query: 999 KKKEEEKEEEEKKEE--EEKEEEEKKRRRIR 1027
+ EE +E EE+ EE ++E+ E+ + ++
Sbjct: 967 RAIEEYEEVEERYEELKSQREDLEEAKEKLL 997
Score = 41.6 bits (98), Expect = 0.002
Identities = 42/219 (19%), Positives = 86/219 (39%), Gaps = 15/219 (6%)
Query: 817 RGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRR 876
RR + E + ++R + + EEE ++ +E+ +E E+ EE
Sbjct: 803 EEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEEL-------- 854
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
+ +E EE + ++ + ++ + R + + R R
Sbjct: 855 EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEE---EKKKEEKKKEEEEKKKKEG----KTKKEEKK 989
+ R EEE E E + E + + EE+ + G + +E ++
Sbjct: 915 EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEE 974
Query: 990 KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
EE E+ K ++E+ +E +EK E +E +++KR R +
Sbjct: 975 VEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKE 1013
Score = 38.5 bits (90), Expect = 0.021
Identities = 36/239 (15%), Positives = 82/239 (34%), Gaps = 19/239 (7%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRG------KKEEEKKKKKEEEEEGGEK 864
L + R + +EE + + + + +E+ ++ EEE E E+
Sbjct: 748 ELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAER 807
Query: 865 EEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRR---RRRKKRRRSRRRRSRRRRRR 921
+ +RR R +E EE +++ + + +
Sbjct: 808 RLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEE 867
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK-----EEKKKEEEEK 976
+ + + R + +EE E+ ++ E K + E +
Sbjct: 868 LEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVE 927
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE-----KKEEEEKEEEEKKRRRIRRKR 1030
+ + +EE + E E +++ + E+E E + EE EE E++ ++ +R
Sbjct: 928 LPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQR 986
Score = 32.4 bits (74), Expect = 1.6
Identities = 20/177 (11%), Positives = 48/177 (27%), Gaps = 3/177 (1%)
Query: 819 RRRRRRKKKEEKKKWKRRGG-GRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRR 877
R + ++ + + + EE ++ + EE E E E
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEE 401
Query: 878 RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
+R + EE+ ++ + K + + + R
Sbjct: 402 LKREI--ESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELR 459
Query: 938 RRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
R + R + E+E + + E E++ + + E +
Sbjct: 460 DRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPG 516
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit.
This is a family of proteins which are subunits of the
eukaryotic translation initiation factor 3 (eIF3). In
yeast it is called Hcr1. The Saccharomyces cerevisiae
protein eIF3j (HCR1) has been shown to be required for
processing of 20S pre-rRNA and binds to 18S rRNA and eIF3
subunits Rpg1p and Prt1p.
Length = 242
Score = 57.0 bits (138), Expect = 8e-09
Identities = 26/75 (34%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 958 EEEEEEKK----KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
E+E+++ K +EE +++EEEK K K K ++ K + EEK+K K+E+E++ + EE
Sbjct: 27 EDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86
Query: 1014 EEKEEEEKKRRRIRR 1028
+ E+E ++ R+R+
Sbjct: 87 DTPEDELAEKLRLRK 101
Score = 51.6 bits (124), Expect = 6e-07
Identities = 21/81 (25%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+ +E+E++ K+ +EE+E+K++E + K ++ + K ++KE+ K E+E+K
Sbjct: 21 KDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKG 80
Query: 1013 EEEKEE---EEKKRRRIRRKR 1030
E EE E++ ++R ++
Sbjct: 81 LRELEEDTPEDELAEKLRLRK 101
Score = 48.9 bits (117), Expect = 4e-06
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE-- 1014
EE+EEEK K K + KK + K +++EK K E+EEK ++ EE+ E+E E+
Sbjct: 42 DEEKEEEKAKVAAKA--KAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRL 99
Query: 1015 EKEEEE 1020
K +EE
Sbjct: 100 RKLQEE 105
Score = 32.3 bits (74), Expect = 0.99
Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 10/80 (12%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE----------E 1009
++EE + + K K + + + ++ K +EE+ ++K+EE+ +
Sbjct: 5 DDEEFEPPAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKA 64
Query: 1010 KKEEEEKEEEEKKRRRIRRK 1029
K EE+EK + EK+ + +R
Sbjct: 65 KIEEKEKAKREKEEKGLREL 84
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic region
found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 53.2 bits (128), Expect = 9e-09
Identities = 34/77 (44%), Positives = 42/77 (54%)
Query: 886 EEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
E EE++ E + R + RRS RRR+RRR RRR+R R+RRRRRR R R R R R
Sbjct: 15 ESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDD 74
Query: 946 RRRRRRRRRSGKEEEEE 962
R R R R +
Sbjct: 75 RDRDRYDRSRSRSRSRS 91
Score = 52.9 bits (127), Expect = 1e-08
Identities = 41/96 (42%), Positives = 46/96 (47%), Gaps = 9/96 (9%)
Query: 856 EEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRS 915
+EEEE E+E++E R R R RRR RR+KR R RRRR
Sbjct: 11 DEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRT---------RRRSRRRKRSRKRRRRR 61
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
R R R R R R R R R R R R R R R RRRR
Sbjct: 62 RDRDRARYRDRDDRDRDRYDRSRSRSRSRSRDRRRR 97
Score = 52.5 bits (126), Expect = 2e-08
Identities = 33/71 (46%), Positives = 40/71 (56%)
Query: 886 EEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
EE E+++ + R+ R R R RR RRR RRR+R R+RRRRRR R R R R R
Sbjct: 14 EESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRD 73
Query: 946 RRRRRRRRRSG 956
R R R RS
Sbjct: 74 DRDRDRYDRSR 84
Score = 51.7 bits (124), Expect = 3e-08
Identities = 35/97 (36%), Positives = 45/97 (46%)
Query: 853 KKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRR 912
+ EE ++EEE RR+ + + + R RRR++ R+R RR
Sbjct: 1 PRVSALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRR 60
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
RR R R R R R R R R R R R R R R RRRR
Sbjct: 61 RRDRDRARYRDRDDRDRDRYDRSRSRSRSRSRDRRRR 97
Score = 49.8 bits (119), Expect = 2e-07
Identities = 33/80 (41%), Positives = 43/80 (53%)
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
S +EE++++ + R R+ RR RRRSRRR+R R+RRRRRR R R R R
Sbjct: 12 EEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRD 71
Query: 939 RRRRRRRRRRRRRRRRSGKE 958
R R R R R R R +
Sbjct: 72 RDDRDRDRYDRSRSRSRSRS 91
Score = 49.8 bits (119), Expect = 2e-07
Identities = 35/82 (42%), Positives = 42/82 (51%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
R EEEE +++E RR+ + R RR RR RRR RRR+R R+RRRR
Sbjct: 1 PRVSALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRR 60
Query: 935 RRRRRRRRRRRRRRRRRRRRSG 956
RR R R R R R R R R
Sbjct: 61 RRDRDRARYRDRDDRDRDRYDR 82
Score = 49.4 bits (118), Expect = 2e-07
Identities = 32/72 (44%), Positives = 39/72 (54%)
Query: 887 EEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
+ ++ G R RRR +RR RR+RSR+RRRRRR R R R R R R R R R R
Sbjct: 26 RRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRDRYDRSRS 85
Query: 947 RRRRRRRRSGKE 958
R R R R +
Sbjct: 86 RSRSRSRDRRRR 97
Score = 41.7 bits (98), Expect = 1e-04
Identities = 26/78 (33%), Positives = 40/78 (51%)
Query: 892 KKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
+++ + RR+ R R RR RRR RRR RRR+R R+RRRRRR R R
Sbjct: 7 EEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDR 66
Query: 952 RRRSGKEEEEEEKKKEEK 969
R +++ + ++ +
Sbjct: 67 ARYRDRDDRDRDRYDRSR 84
Score = 37.5 bits (87), Expect = 0.004
Identities = 26/79 (32%), Positives = 40/79 (50%)
Query: 894 EGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
E ++ RR R R RR RRR RRR RRR+R R+RRRRRR R R
Sbjct: 7 EEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDR 66
Query: 954 RSGKEEEEEEKKKEEKKKE 972
++ ++ ++ + ++ +
Sbjct: 67 ARYRDRDDRDRDRYDRSRS 85
Score = 37.1 bits (86), Expect = 0.005
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
+ +EE ++K E + + G + RRR+R R+ + ++ + R R +
Sbjct: 20 EDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRDR 79
Query: 906 KRRRSRRRRSRRRRRRRR 923
R R RSR R RRRR
Sbjct: 80 YDRSRSRSRSRSRDRRRR 97
Score = 36.3 bits (84), Expect = 0.009
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKK 970
R+ R R RR RRR RRR RRR+R R+RRRRRR R + + +++ ++
Sbjct: 22 DEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRDRYD 81
Query: 971 KEEE 974
+
Sbjct: 82 RSRS 85
Score = 36.3 bits (84), Expect = 0.010
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE 968
RR+ R R RR RRR RRR RRR+R R+RRRRRR R + + + +
Sbjct: 19 EEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRD 78
Query: 969 KKKEEEEK 976
+ +
Sbjct: 79 RYDRSRSR 86
Score = 32.1 bits (73), Expect = 0.32
Identities = 16/79 (20%), Positives = 28/79 (35%)
Query: 840 RRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGR 899
+ + ++ + R+RRRRR ++ + ++
Sbjct: 19 EEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRDRDDRDRD 78
Query: 900 RRRRRKKRRRSRRRRSRRR 918
R R + R RSR R RRR
Sbjct: 79 RYDRSRSRSRSRSRDRRRR 97
Score = 31.7 bits (72), Expect = 0.42
Identities = 18/71 (25%), Positives = 31/71 (43%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKK 970
S RR+ R R RR RRR RRR RRR+R R + + + +
Sbjct: 12 EEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYRD 71
Query: 971 KEEEEKKKKEG 981
+++ ++ + +
Sbjct: 72 RDDRDRDRYDR 82
Score = 31.7 bits (72), Expect = 0.47
Identities = 20/75 (26%), Positives = 32/75 (42%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
RR+ R R RR RRR RRR RRR+R R+RRR ++ + +
Sbjct: 11 DEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYR 70
Query: 966 KEEKKKEEEEKKKKE 980
+ + + + +
Sbjct: 71 DRDDRDRDRYDRSRS 85
Score = 27.8 bits (62), Expect = 8.6
Identities = 34/124 (27%), Positives = 39/124 (31%), Gaps = 41/124 (33%)
Query: 813 SRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGG 872
R+K E RR RR RR +
Sbjct: 15 ESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRR------------------------ 50
Query: 873 GGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
R+R R+RR RRR R + R R R R R R R R R R R R
Sbjct: 51 --RKRSRKRRR---------------RRRDRDRARYRDRDDRDRDRYDRSRSRSRSRSRD 93
Query: 933 RRRR 936
RRRR
Sbjct: 94 RRRR 97
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 58.0 bits (140), Expect = 1e-08
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
GR + ++ + K E+++KKKE + ++ + R ++ + R + + ++++
Sbjct: 65 GRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAE 124
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE--KKKEEEEKKKK--EGKTKKEEKK 989
++ + ++++ + R+ + K E + K E K K E KKK E EE K
Sbjct: 125 KQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAK 184
Query: 990 KEEEEEKKKKKKEEE---KEEEEKKEEEEKEEEEKKRRR 1025
+ E KKK E E E+ K E E K + EKK
Sbjct: 185 AKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEA 223
Score = 53.8 bits (129), Expect = 3e-07
Identities = 37/187 (19%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 846 KKEEEKKKKKE---EEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRR 902
K E+++KKK+E EE + + E+E R ++ + K +E++K+ E + +
Sbjct: 76 KGEQQRKKKEEQVAEELKPKQAAEQE------RLKQLEKERLKAQEQQKQAEEAEKQAQL 129
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG--KEEE 960
+K++ R+ + ++++ + + + + +++ + K E
Sbjct: 130 EQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEA 189
Query: 961 EEEKKKEE---KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
KKK E K E+ K + E K K E+K + EEK +K ++ + K ++
Sbjct: 190 AAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEK-KKAAAKAKADKAAAA 248
Query: 1018 EEEKKRR 1024
+ +R+
Sbjct: 249 AKAAERK 255
Score = 50.7 bits (121), Expect = 2e-06
Identities = 28/178 (15%), Positives = 80/178 (44%), Gaps = 15/178 (8%)
Query: 849 EEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRR 908
++ + + ++ + E++ R+++ + EE K K+ R ++ +K R
Sbjct: 62 QQYGRIQSQQSSAKKGEQQ-----------RKKKEEQVAEELKPKQAAEQERLKQLEKER 110
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE----EEEEK 964
+ + ++ ++ + ++++ + R+ ++++ + + + + E K
Sbjct: 111 LKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAK 170
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
KK E+ + E+ K + + +KK E E + +K + E E + K E++ + E+K
Sbjct: 171 KKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK 228
Score = 48.0 bits (114), Expect = 2e-05
Identities = 32/205 (15%), Positives = 84/205 (40%), Gaps = 14/205 (6%)
Query: 817 RGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRR 876
+ ++ +K ++++KK + + + + E+E+ K+ E+E ++ +
Sbjct: 68 QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQE-----------Q 116
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
+++ + K+ + ++K++ R+ +K++ + + + +++
Sbjct: 117 QKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEA 176
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE-EKKKEEEEE 995
+ + + ++ K E E + E+ K E E K K E K + E+K E++
Sbjct: 177 AKAAEEAKAKAEAAAAKK--KAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKK 234
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEE 1020
K K + +K K E K
Sbjct: 235 KAAAKAKADKAAAAAKAAERKAAAA 259
Score = 46.9 bits (111), Expect = 4e-05
Identities = 18/99 (18%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK--EEKKK 990
R + ++ ++ ++R+++ + +E + ++ ++E+ K+ E+++ K + +K EE +K
Sbjct: 66 RIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK 125
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+ + E+K+++++ K E+K++ E + + + K
Sbjct: 126 QAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLK 164
Score = 45.3 bits (107), Expect = 1e-04
Identities = 19/113 (16%), Positives = 59/113 (52%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
R + ++ ++ ++R+++ + + ++ + R + ++E + ++++++ +E E+
Sbjct: 66 RIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK 125
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
+ + E K ++E+ +K E+KKK + + K E + + E +KK +
Sbjct: 126 QAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAK 178
Score = 36.5 bits (84), Expect = 0.064
Identities = 26/189 (13%), Positives = 65/189 (34%), Gaps = 36/189 (19%)
Query: 810 IRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEG 869
++ R + + ++K+ EE +K + ++ + +K ++KKK E + E
Sbjct: 103 LKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAK 162
Query: 870 GGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
+++ + K EE K K +++ + + +
Sbjct: 163 LKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAA------------------- 203
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK 989
+ + K + E++ + ++K EKKK K K ++
Sbjct: 204 -----------------AEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAA 246
Query: 990 KEEEEEKKK 998
+ ++K
Sbjct: 247 AAAKAAERK 255
Score = 33.8 bits (77), Expect = 0.47
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
++ + ++ KK ++ + KKEE+ EE K K+ E+E+ ++ +KE + +E++K+
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQ--VAEELKPKQAAEQERLKQLEKERLKAQEQQKQ 119
Query: 1023 RRRIRRKR 1030
++
Sbjct: 120 AEEAEKQA 127
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 55.5 bits (134), Expect = 1e-08
Identities = 27/66 (40%), Positives = 50/66 (75%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+++E ++ E+ KKE EEK+K + K KK +KKK+++++KK KK+++ E++++KE E+K
Sbjct: 62 KKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121
Query: 1017 EEEEKK 1022
E+ K
Sbjct: 122 LEDLTK 127
Score = 52.8 bits (127), Expect = 9e-08
Identities = 21/70 (30%), Positives = 46/70 (65%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K++E E+ ++ KK+ EE++K K K K ++KK +++++K KK ++ ++++EK+ E++
Sbjct: 63 KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKL 122
Query: 1017 EEEEKKRRRI 1026
E+ K
Sbjct: 123 EDLTKSYSET 132
Score = 52.8 bits (127), Expect = 1e-07
Identities = 25/66 (37%), Positives = 43/66 (65%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EE E+ KK+ E+K++ + KKKK K K ++K K+++++ K +K++EKE E+K E+ K
Sbjct: 68 AEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127
Query: 1017 EEEEKK 1022
E
Sbjct: 128 SYSETL 133
Score = 52.0 bits (125), Expect = 2e-07
Identities = 24/69 (34%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKE----GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
E E KKK+++ EE EK KKE K K ++KK +++++K K KK+++K+++ +K++
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114
Query: 1014 EEKEEEEKK 1022
E++ E++ +
Sbjct: 115 EKEAEDKLE 123
Score = 50.5 bits (121), Expect = 6e-07
Identities = 24/72 (33%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 958 EEEEEEKKKEEKKKE-EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
E E +KKK+E +E E+ KK+ E K K + KKK+ +++K K K +++ ++++K E++++
Sbjct: 56 EYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Query: 1017 EEEEKKRRRIRR 1028
+E E K + +
Sbjct: 116 KEAEDKLEDLTK 127
Score = 48.9 bits (117), Expect = 2e-06
Identities = 20/81 (24%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE+++ K K++K K++++K K + KK++K ++++E++ + K E+ + + E
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSE 138
Query: 1018 EEEKK--------RRRIRRKR 1030
+ +K + R+ RKR
Sbjct: 139 LKPRKYALHKDIYQSRLDRKR 159
Score = 45.5 bits (108), Expect = 3e-05
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
++ K++ + +KKK +KKK++++ KK + K K EKK E+E E K + + E
Sbjct: 75 KKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLS 134
Query: 1011 KEEEEK 1016
E K
Sbjct: 135 TLSELK 140
Score = 38.1 bits (89), Expect = 0.009
Identities = 16/87 (18%), Positives = 47/87 (54%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
+++ + ++++ K++++++KK ++K + E+K +KE + K E+ K E + +
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELK 140
Query: 1004 EKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
++ K+ + + K+R + +K
Sbjct: 141 PRKYALHKDIYQSRLDRKRRAEVAKKE 167
Score = 31.6 bits (72), Expect = 1.3
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRS 883
+K+ EEK+KWK + +++ + KK+++K KK +++++ EK++E+ + +
Sbjct: 75 KKEYEEKQKWKWK---KKKSKKKKDKDKDKKDDKKDDKSEKKDEK-----EAEDKLEDLT 126
Query: 884 GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
E R+ K +SR R RR ++
Sbjct: 127 KSYSETLSTLSELKPRKYALHKDIYQSRLDRKRRAEVAKKEAEE 170
>gnl|CDD|223046 PHA03328, PHA03328, nuclear egress lamina protein UL31;
Provisional.
Length = 316
Score = 57.4 bits (139), Expect = 1e-08
Identities = 23/60 (38%), Positives = 25/60 (41%)
Query: 894 EGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
+ RR +R R RRSRR R R R R R RRR RR RR R R
Sbjct: 2 DDLALRRSSSSLRRSRRAARRSRRDGRVGSRGRSRYRSRRRSSRRSSTRRAELADTERDR 61
Score = 54.7 bits (132), Expect = 1e-07
Identities = 22/56 (39%), Positives = 23/56 (41%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
RR R RR +RR RR R R R R R RRR RR RR R
Sbjct: 5 ALRRSSSSLRRSRRAARRSRRDGRVGSRGRSRYRSRRRSSRRSSTRRAELADTERD 60
Score = 53.9 bits (130), Expect = 2e-07
Identities = 22/56 (39%), Positives = 24/56 (42%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
R RR RR RR RR R R R R R RRR RR RR + E +
Sbjct: 5 ALRRSSSSLRRSRRAARRSRRDGRVGSRGRSRYRSRRRSSRRSSTRRAELADTERD 60
Score = 52.8 bits (127), Expect = 4e-07
Identities = 22/51 (43%), Positives = 22/51 (43%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
RR RR RR R R R R R R RRR RR RR R R R
Sbjct: 14 RRSRRAARRSRRDGRVGSRGRSRYRSRRRSSRRSSTRRAELADTERDRYRA 64
Score = 52.8 bits (127), Expect = 4e-07
Identities = 22/58 (37%), Positives = 22/58 (37%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
RR RR R R RR R R R R R RRR RR RR R R
Sbjct: 4 LALRRSSSSLRRSRRAARRSRRDGRVGSRGRSRYRSRRRSSRRSSTRRAELADTERDR 61
Score = 52.0 bits (125), Expect = 8e-07
Identities = 23/58 (39%), Positives = 23/58 (39%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
RR RRSRR R RR R R R R R RRR RR RR R
Sbjct: 4 LALRRSSSSLRRSRRAARRSRRDGRVGSRGRSRYRSRRRSSRRSSTRRAELADTERDR 61
Score = 51.6 bits (124), Expect = 1e-06
Identities = 21/58 (36%), Positives = 24/58 (41%)
Query: 892 KKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
++ RR RR +R R R R R R R RRR RR RR R R R
Sbjct: 7 RRSSSSLRRSRRAARRSRRDGRVGSRGRSRYRSRRRSSRRSSTRRAELADTERDRYRA 64
Score = 51.3 bits (123), Expect = 1e-06
Identities = 21/58 (36%), Positives = 25/58 (43%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
++ R RR ++ RR R SR R R R RRR RR RR R R R
Sbjct: 7 RRSSSSLRRSRRAARRSRRDGRVGSRGRSRYRSRRRSSRRSSTRRAELADTERDRYRA 64
Score = 43.9 bits (104), Expect = 2e-04
Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRR 931
R RR RR G G R R R + RRRS RR S RR R R R
Sbjct: 17 RRAARRSRRDG----------RVGSRGRSRYRSRRRSSRRSSTRRAELADTERDRYRA 64
Score = 43.2 bits (102), Expect = 5e-04
Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 870 GGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
R RR RRS ++ G G R R R + RR RRS RR R R
Sbjct: 10 SSSLRRSRRAARRSRRD--------GRVGSRGRSRYRSRRRSSRRSSTRRAELADTERDR 61
Query: 930 RRR 932
R
Sbjct: 62 YRA 64
>gnl|CDD|219061 pfam06495, Transformer, Fruit fly transformer protein. This family
consists of transformer proteins from several Drosophila
species and also from Ceratitis capitata (Mediterranean
fruit fly). The transformer locus (tra) produces an RNA
processing protein that alternatively splices the
doublesex pre-mRNA in the sex determination hierarchy of
Drosophila melanogaster.
Length = 182
Score = 54.7 bits (131), Expect = 2e-08
Identities = 28/84 (33%), Positives = 37/84 (44%)
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
R R R R + + + + RR R + R +S R S +RR R R R R R R
Sbjct: 30 VRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSAERNSCQRRHRSRSRSRNRSDSR 89
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGK 957
R RRRR R R R R+ +
Sbjct: 90 HRSTSSTERRRRSRSRSRYSRTPR 113
Score = 45.8 bits (108), Expect = 2e-05
Identities = 26/92 (28%), Positives = 36/92 (39%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
R RR KE+ E R R ++R+ R + R RR R R R + R
Sbjct: 11 RDTRRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSAERN 70
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
+RR R R R R R R E +++
Sbjct: 71 SCQRRHRSRSRSRNRSDSRHRSTSSTERRRRS 102
Score = 45.4 bits (107), Expect = 3e-05
Identities = 26/95 (27%), Positives = 42/95 (44%)
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
R RR S K+E+ + R R R ++R+++ R R RR R R R + R
Sbjct: 11 RDTRRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSAERN 70
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
+RR R R R R R + E+++ + +
Sbjct: 71 SCQRRHRSRSRSRNRSDSRHRSTSSTERRRRSRSR 105
Score = 39.3 bits (91), Expect = 0.003
Identities = 25/100 (25%), Positives = 42/100 (42%)
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
R R + + KK+K R R + R R+R+++ R R RR R R R +
Sbjct: 8 RSPRDTRRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSA 67
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
R +RR R R R R+ + E+++ + +
Sbjct: 68 ERNSCQRRHRSRSRSRNRSDSRHRSTSSTERRRRSRSRSR 107
Score = 39.3 bits (91), Expect = 0.004
Identities = 24/78 (30%), Positives = 33/78 (42%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
R R R ++EK R R R + R+ + + +R R RR R R R +
Sbjct: 8 RSPRDTRRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSA 67
Query: 936 RRRRRRRRRRRRRRRRRR 953
R +RR R R R R R
Sbjct: 68 ERNSCQRRHRSRSRSRNR 85
Score = 38.1 bits (88), Expect = 0.009
Identities = 32/124 (25%), Positives = 43/124 (34%), Gaps = 20/124 (16%)
Query: 813 SRNRRGRRRRRRKKKEEKKKW-----KRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE 867
S +R R RR +K+EK + + R R R+ K + + +
Sbjct: 5 SSSRSPRDTRRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRS 64
Query: 868 EGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
+ +RR R RS R R R R RS RRRR R R R
Sbjct: 65 QSAERNSCQRRHRSRS---------------RSRNRSDSRHRSTSSTERRRRSRSRSRYS 109
Query: 928 RRRR 931
R R
Sbjct: 110 RTPR 113
Score = 36.9 bits (85), Expect = 0.019
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 10/90 (11%)
Query: 900 RRRRRKK----------RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
RR RKK R R R R R+R+ + R R RR R R R + R +
Sbjct: 14 RRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSAERNSCQ 73
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
RR R + + + E ++ +
Sbjct: 74 RRHRSRSRSRNRSDSRHRSTSSTERRRRSR 103
Score = 34.6 bits (79), Expect = 0.12
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
Query: 899 RRRRRRKKR--------RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
RR R+K++ R R R+ R+R+ + R R RR R R R + R +
Sbjct: 14 RRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSAERNSCQ 73
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
RR RS + E +++ +++
Sbjct: 74 RRHRSRSRSRNRSDSRHRSTSSTERRRRSRSRSR 107
Score = 32.7 bits (74), Expect = 0.52
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 909 RSRRRRSRRRRRR-------RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
R RR SR++ + R R R R R+R+ + R R RR R R RS E
Sbjct: 11 RDTRRDSRKKEKIPYFADEVRERDRVRNLRQRKTQSTRPTTSHRGRRTRSRSRSQSAERN 70
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+++ + + ++ +++ + + +
Sbjct: 71 SCQRRHRSRSRSRNRSDSRHRSTSSTERRRRSRSRSRYSR 110
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 58.1 bits (140), Expect = 3e-08
Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 14/192 (7%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
KK+E KK EE E E + + + KE+ +K + + +
Sbjct: 171 KKKERLKKLIEETENLAELIIDL------EELKLQELKLKEQAKKALEYYQLKEKLELEE 224
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
+ R + R + ++ + + + KEEE+E+K
Sbjct: 225 ENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKL 284
Query: 966 KEEKKK--------EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+EE+ K + E K E + +E+K +E E++ KK ++E K+E+E+ EE EKE
Sbjct: 285 QEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKE 344
Query: 1018 EEEKKRRRIRRK 1029
+E + +R +
Sbjct: 345 LKELEIKREAEE 356
Score = 54.2 bits (130), Expect = 3e-07
Identities = 50/206 (24%), Positives = 92/206 (44%), Gaps = 2/206 (0%)
Query: 821 RRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRR 880
+ + E+ K+ K G + K E K KE G EE +
Sbjct: 611 KATLEADEDDKRAKVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLS 670
Query: 881 RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
+ + E++ +E + RR+ ++ +R + ++ + + + +
Sbjct: 671 ELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQE 730
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
+ + + + KE+EEEE+K KK+EEEE+K + + KE++ EEEE+ +K K
Sbjct: 731 AQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSEL--SLKEKELAEEEEKTEKLK 788
Query: 1001 KEEEKEEEEKKEEEEKEEEEKKRRRI 1026
EEEKEE+ K +EEE E++ +
Sbjct: 789 VEEEKEEKLKAQEEELRALEEELKEE 814
Score = 53.4 bits (128), Expect = 5e-07
Identities = 30/179 (16%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 850 EKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRR 909
+++ + EEE G +E+ + + R ++ E + + + + + K +
Sbjct: 153 PERRLEIEEEAAGSREKRKK-----KERLKKLIEETENLAELIIDLEELKLQELKLKEQA 207
Query: 910 SRRRRSRRRRRRRRRRRRR----RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
+ + + + + R + R + S +E E+EE+
Sbjct: 208 KKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEI 267
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+ KE +E++K++ ++E K +EEE+ K + + + + EE+ KE E++ ++
Sbjct: 268 LAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKK 326
Score = 52.7 bits (126), Expect = 1e-06
Identities = 31/215 (14%), Positives = 85/215 (39%)
Query: 808 TQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE 867
G R+ ++ +K + + + E++ ++K E E +
Sbjct: 638 LLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILR 697
Query: 868 EGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
+ +R + K + EK++ + + + + + + + R
Sbjct: 698 RQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSR 757
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE 987
++ + + + + + EEE+++K + ++EE ++E K + E
Sbjct: 758 LKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAEL 817
Query: 988 KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
++E+ ++++K +EE+ EE E +E+++ EK
Sbjct: 818 LEEEQLLIEQEEKIKEEELEELALELKEEQKLEKL 852
Score = 51.5 bits (123), Expect = 3e-06
Identities = 36/208 (17%), Positives = 82/208 (39%)
Query: 823 RRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRR 882
+ K E K +RR + + E+E KK ++E ++ E+ EE +R
Sbjct: 296 EEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAE 355
Query: 883 SGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
+EE+ +K +E K++ R S + + + + +
Sbjct: 356 EEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELS 415
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
+ + ++ + EE ++ E K+ + ++K+E + + + K++ E KK +
Sbjct: 416 EQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLL 475
Query: 1003 EEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+E + + E+ E +K +K
Sbjct: 476 KETKLVKLLEQLELLLLRQKLEEASQKE 503
Score = 51.1 bits (122), Expect = 3e-06
Identities = 38/206 (18%), Positives = 92/206 (44%), Gaps = 1/206 (0%)
Query: 822 RRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRR 881
+ + + K + RR +++ + +EE KK K E+EE + +E +
Sbjct: 684 EKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLE 743
Query: 882 RSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
+E+E+++++ + +K S + + + + + + + + +
Sbjct: 744 -QKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEE 802
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
R + EEE+ ++EEK KEEE ++ ++++ +K EEE ++ ++
Sbjct: 803 ELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEE 862
Query: 1002 EEEKEEEEKKEEEEKEEEEKKRRRIR 1027
E KEE ++ ++EE E+++ +
Sbjct: 863 EITKEELLQELLLKEEELEEQKLKDE 888
Score = 50.7 bits (121), Expect = 4e-06
Identities = 35/222 (15%), Positives = 91/222 (40%), Gaps = 4/222 (1%)
Query: 809 QIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEE 868
+ + E++ + K + +++EE KKK++ +E +K + E
Sbjct: 660 AEKSELKASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLE 719
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
+ + + EE + +++ + + ++ + ++ + + +
Sbjct: 720 KEELLADKVQEAQDKINEELKLLEQK----IKEKEEEEEKSRLKKEEEEEEKSELSLKEK 775
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK 988
+ + + + + + + EEE K+E + EEE+ ++ + KEE+
Sbjct: 776 ELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEE 835
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+E E K+++K E+ EEE + EE+ +E+ + + K
Sbjct: 836 LEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKE 877
Score = 45.7 bits (108), Expect = 1e-04
Identities = 38/221 (17%), Positives = 87/221 (39%), Gaps = 17/221 (7%)
Query: 809 QIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEE 868
+ + + + K++ KK E + K+K E EE +
Sbjct: 187 AELIIDLEELKLQELKLKEQAKK--------------ALEYYQLKEKLELEEENLLYLDY 232
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
R +E+++ E + + + + + ++ +
Sbjct: 233 ---LKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEEL 289
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK 988
+ + + + RR+ KE E+E KK E++ K+E+E+ ++ K KE +
Sbjct: 290 KLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELE 349
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K E EE+++++ E+ +E+ E+ EEE +++ + R+
Sbjct: 350 IKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSA 390
Score = 45.0 bits (106), Expect = 2e-04
Identities = 21/119 (17%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK--- 978
R+++ R ++ + + + ++ ++ + + K+K E E++
Sbjct: 170 RKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLY 229
Query: 979 -------KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+E +E ++E+EE + K+E EKEEE + ++ +EE+K ++++ +
Sbjct: 230 LDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEE 288
Score = 44.2 bits (104), Expect = 4e-04
Identities = 26/149 (17%), Positives = 63/149 (42%), Gaps = 3/149 (2%)
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
K E + +E G R +R+KK R + + + + + + ++
Sbjct: 152 KPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKAL 211
Query: 945 RRRRRRRRRRSGKEEE---EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+ + + +E + K EE+ +E + E + + K++ E+EE+ +
Sbjct: 212 EYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQV 271
Query: 1002 EEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+E +EEEK+++ ++EE + + +
Sbjct: 272 LKENKEEEKEKKLQEEELKLLAKEEEELK 300
Score = 41.9 bits (98), Expect = 0.002
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
KEEEEE K+ KEE + EEK++ +++ KK++ EE+++E +E E+
Sbjct: 956 KEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEE 1015
Query: 1017 EEEEKKR 1023
+ K
Sbjct: 1016 TCQRFKE 1022
Score = 40.3 bits (94), Expect = 0.006
Identities = 41/242 (16%), Positives = 85/242 (35%), Gaps = 31/242 (12%)
Query: 820 RRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRR 879
++K EK K + + + + ++ +++ +EE E E+E+ +
Sbjct: 776 ELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEE 835
Query: 880 RRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
E +E++K E R ++ + ++ + + +
Sbjct: 836 LEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEK 895
Query: 940 RRRRRRRRRRRRRR-----------------------------RSGKEEEEEEKKKEEKK 970
+ ++ ++ EE +EK+KEE
Sbjct: 896 EKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDN 955
Query: 971 KEEEEKKKKEGKTKKEE--KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
KEEEE++ K KEE + ++K+E ++E KKE E+E++E R I
Sbjct: 956 KEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEE 1015
Query: 1029 KR 1030
Sbjct: 1016 TC 1017
Score = 37.3 bits (86), Expect = 0.048
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+EEEEE+ K +EE + E+K+E + + KK+ E+E++E E +
Sbjct: 955 NKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIE 1014
Query: 1017 EEEEKKRR 1024
E ++ +
Sbjct: 1015 ETCQRFKE 1022
Score = 35.7 bits (82), Expect = 0.14
Identities = 37/212 (17%), Positives = 80/212 (37%), Gaps = 6/212 (2%)
Query: 817 RGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRR 876
+ ++EEK K + + +++ EK ++E E E +EE
Sbjct: 817 LLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL------L 870
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
+ + + EE+K K E + + +K+ + + R
Sbjct: 871 QELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAII 930
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
+ KEE+ +E+++E K+ K++ + EE+EE+
Sbjct: 931 LLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEER 990
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
K + +++ EE+K+E +E E+ +R +
Sbjct: 991 YNKDELKKERLEEEKKELLREIIEETCQRFKE 1022
Score = 35.3 bits (81), Expect = 0.22
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
R + +EE E E+K++ + +K++ EEE+K+ ++ E+ +
Sbjct: 960 EERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQR 1019
Query: 1010 KKEE 1013
KE
Sbjct: 1020 FKEF 1023
Score = 31.5 bits (71), Expect = 2.9
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
R +R + + E +++E++ ++E KK+ + +K+E +E EE ++
Sbjct: 960 EERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQR 1019
Query: 1000 KKEE 1003
KE
Sbjct: 1020 FKEF 1023
>gnl|CDD|217438 pfam03228, Adeno_VII, Adenoviral core protein VII. The function of
this protein is unknown. It has a conserved amino
terminus of 50 residues followed by a positively charged
tail, suggesting it may interact with nucleic acid. The
major core protein of the adenovirus, protein VII, was
found to be associated with viral DNA throughout
infection. The precursor to protein VII were shown to be
in vivo and in vitro acceptors of ADP-ribose. The
ADP-ribosylated core proteins were assembled into mature
virus particles. ADP-ribosylation of adenovirus core
proteins may have a role in virus decapsidation.
Length = 117
Score = 52.5 bits (126), Expect = 3e-08
Identities = 25/83 (30%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
G GR R ++ +K R S R RRRRR
Sbjct: 43 WGSLNGRTTVDDLRDNLKKYARKY--------TERTVASTVDPVADSVPAGARAYRRRRR 94
Query: 929 RRRRRRRRRRRRRRRRRRRRRRR 951
R RR RRR RR+ R RR R
Sbjct: 95 RLRRVARRRARRKSTRARRAARA 117
Score = 51.0 bits (122), Expect = 1e-07
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 900 RRRRRKKRRRSRRRRSRRRRR------RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R +K R+ R R RRRRRR RR RRR RR+ R RR
Sbjct: 56 RDNLKKYARKYTERTVASTVDPVADSVPAGARAYRRRRRRLRRVARRRARRKSTRARRAA 115
Query: 954 RS 955
R+
Sbjct: 116 RA 117
Score = 50.2 bits (120), Expect = 2e-07
Identities = 20/54 (37%), Positives = 22/54 (40%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
R+ R R RRRRRR RR RRR RR+ R RR R
Sbjct: 64 RKYTERTVASTVDPVADSVPAGARAYRRRRRRLRRVARRRARRKSTRARRAARA 117
Score = 45.6 bits (108), Expect = 9e-06
Identities = 18/58 (31%), Positives = 23/58 (39%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R ++ +R+ R R RRRRRR RR RRR RR+S
Sbjct: 52 VDDLRDNLKKYARKYTERTVASTVDPVADSVPAGARAYRRRRRRLRRVARRRARRKST 109
Score = 41.0 bits (96), Expect = 3e-04
Identities = 15/56 (26%), Positives = 19/56 (33%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R R ++ + R R RRRRRR RR RRR+
Sbjct: 49 RTTVDDLRDNLKKYARKYTERTVASTVDPVADSVPAGARAYRRRRRRLRRVARRRA 104
Score = 37.5 bits (87), Expect = 0.005
Identities = 13/55 (23%), Positives = 16/55 (29%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R R + R+ R R RRRRRR RR +
Sbjct: 46 LNGRTTVDDLRDNLKKYARKYTERTVASTVDPVADSVPAGARAYRRRRRRLRRVA 100
Score = 37.1 bits (86), Expect = 0.008
Identities = 15/59 (25%), Positives = 18/59 (30%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
G R R ++ R+ R R RRRRRR RR R
Sbjct: 43 WGSLNGRTTVDDLRDNLKKYARKYTERTVASTVDPVADSVPAGARAYRRRRRRLRRVAR 101
Score = 34.8 bits (80), Expect = 0.050
Identities = 12/56 (21%), Positives = 17/56 (30%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
+ R ++ R+ R R RRRRRR RR +
Sbjct: 46 LNGRTTVDDLRDNLKKYARKYTERTVASTVDPVADSVPAGARAYRRRRRRLRRVAR 101
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily
archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and C-terminal
domains of this protein are well conserved, but the
central hinge region is skewed in composition and highly
divergent [Cellular processes, Cell division, DNA
metabolism, Chromosome-associated proteins].
Length = 1164
Score = 57.0 bits (138), Expect = 5e-08
Identities = 50/239 (20%), Positives = 89/239 (37%), Gaps = 22/239 (9%)
Query: 810 IRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKE---- 865
I R + R RR R+K E + + +R G + ++K+ E ++E E++
Sbjct: 193 IDEKRQQLERLRREREKAERYQALLKE---KREYEGYELLKEKEALERQKEAIERQLASL 249
Query: 866 EEEGGGGGGRRRRRRRRSG------KEEEEKKKKEGGGGRRRRRRK---------KRRRS 910
EEE +R +E +K K G + R + K RS
Sbjct: 250 EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS 309
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKK 970
+ R R + + R R+RR EE E K++ E
Sbjct: 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDL 369
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+ E E+ KE ++E K E+ +K K++ E + E + +EE + ++ +
Sbjct: 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAA 428
Score = 52.4 bits (126), Expect = 1e-06
Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 3/182 (1%)
Query: 847 KEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRR--RRR 904
++ E++ K E E E E R+RR EE + K+E R
Sbjct: 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD 377
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
K+ +R R + + +R +R R + +R + E +
Sbjct: 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN 437
Query: 965 KKEEKKKE-EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
+ EE+K++ E KK+E K ++ + E++ KEE E++ + ++E E +
Sbjct: 438 ELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497
Query: 1024 RR 1025
+
Sbjct: 498 QA 499
Score = 48.5 bits (116), Expect = 2e-05
Identities = 37/173 (21%), Positives = 60/173 (34%), Gaps = 14/173 (8%)
Query: 862 GEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRR 921
GE E+ G GG R R E + + R R R + +R RR
Sbjct: 646 GELFEKSGAMTGGSRAPRGGILFSRSEPAELQ-----RLRERLEGLKRELSSLQSELRRI 700
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
R + R+ + + + KE EE ++ ++E E K E
Sbjct: 701 ENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE- 759
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKE-------EEEKKEEEEKEEEEKKRRRIR 1027
K+ E + EE EE K +E + + + E + E++ RI
Sbjct: 760 -LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIE 811
Score = 43.1 bits (102), Expect = 0.001
Identities = 36/214 (16%), Positives = 72/214 (33%), Gaps = 16/214 (7%)
Query: 817 RGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRR 876
+K E +K + + ++ EE ++ E+ E + E R
Sbjct: 708 SQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI 767
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
K EE E R R + + R R
Sbjct: 768 EELEEDLHKLEEALNDLE-------------ARLSHSRIPEIQAELSKLEEEVSRIEARL 814
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
R ++ R + +E +E++ +++ + EK+ + KKEE + EE +
Sbjct: 815 REIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELE---EELE 871
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ + + E ++E++E E + R + RK
Sbjct: 872 ELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
Score = 36.6 bits (85), Expect = 0.085
Identities = 46/237 (19%), Positives = 89/237 (37%), Gaps = 22/237 (9%)
Query: 804 KVCITQIRLSRNRRGR-RRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKK---KKKEEEE 859
+I + + K KE ++ + + + E K + EE E
Sbjct: 712 SDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771
Query: 860 EGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRR 919
E K EE R R + E K ++E R + R R ++ R
Sbjct: 772 EDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEE------VSRIEARLREIEQKLNRLT 825
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRR----RRRRRSGKEEEEE--------EKKKE 967
+ + + + +R + + + + ++ +EE EE E +
Sbjct: 826 LEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG 885
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+ KKE +E + + + +++ ++ E + EKK+K+ E K + E EEE E E+ K
Sbjct: 886 DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
Score = 36.2 bits (84), Expect = 0.097
Identities = 39/191 (20%), Positives = 75/191 (39%), Gaps = 16/191 (8%)
Query: 848 EEEKKKKKEEEEEGGEKEE------EEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRR 901
+ +K+K EE EE E E +E R RR R ++ + + K+K G
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYEL 228
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRR------RRRRRRRRRRRRRRRRRRRRRRRRRRS 955
+ K+ R + R+ +R + ++ +
Sbjct: 229 LKEKEALE----RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL 284
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
G+EE+ K+K + + E ++ K+ E + EE K + + ++ E ++ E E
Sbjct: 285 GEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE 344
Query: 1016 KEEEEKKRRRI 1026
EEE K+R ++
Sbjct: 345 IEEERKRRDKL 355
Score = 36.2 bits (84), Expect = 0.10
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 8/145 (5%)
Query: 886 EEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
E+E ++ + +R K++ +S + ++ R R
Sbjct: 831 LEKEIQELQ----EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGD 886
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK--KEGKTKKEEKKKEEEEEKKKKKKEE 1003
++ R + E E+K EE + + E+K+K E K K E ++E E + K ++E
Sbjct: 887 LKKERDELE--AQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
Query: 1004 EKEEEEKKEEEEKEEEEKKRRRIRR 1028
E EEE E+ + E ++ IR
Sbjct: 945 EIPEEELSLEDVQAELQRVEEEIRA 969
Score = 33.5 bits (77), Expect = 0.72
Identities = 33/197 (16%), Positives = 73/197 (37%), Gaps = 8/197 (4%)
Query: 822 RRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRR 881
K E ++ +R R+RR K EE + KEE E+ + EE R
Sbjct: 330 EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF--AETRDEL 387
Query: 882 RSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
+ +E+ EK K+E +R R + +R + + +
Sbjct: 388 KDYREKLEKLKREINELKRELDRLQEE-LQRLSEELADLNAAIAGIEAKINELEEEKEDK 446
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+++ + E+ + K E++ + +++ + + + ++E E + + +
Sbjct: 447 ALEIKKQEWKL-----EQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
Query: 1002 EEEKEEEEKKEEEEKEE 1018
EE+ + EE +
Sbjct: 502 SEERVRGGRAVEEVLKA 518
Score = 32.7 bits (75), Expect = 1.3
Identities = 20/71 (28%), Positives = 36/71 (50%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E +K E + +EK++ EG +EK+ E +++ +++ EEE +K EE E
Sbjct: 204 RREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISEL 263
Query: 1020 EKKRRRIRRKR 1030
EK+ I +
Sbjct: 264 EKRLEEIEQLL 274
Score = 31.6 bits (72), Expect = 2.8
Identities = 43/210 (20%), Positives = 80/210 (38%), Gaps = 14/210 (6%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRS 883
+ + + ++ R R R +K +KE E+ ++ +E+ + + +
Sbjct: 797 QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE- 855
Query: 884 GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
E KKE R R ++ R + R R+ +
Sbjct: 856 --IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE 913
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE---GKTKKEEKKKEEEEEKKKK- 999
++R+R + + EEE + E+ K E+EE ++E + E ++ EEE +
Sbjct: 914 KKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPV 973
Query: 1000 --KKEEEKEEEEK-----KEEEEKEEEEKK 1022
+E EE K KE+ K EEE+K
Sbjct: 974 NMLAIQEYEEVLKRLDELKEKRAKLEEERK 1003
Score = 30.8 bits (70), Expect = 5.3
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE-- 1007
R++ ++ +E EE E+ E +EK+++ + ++E +K E + K+K+E E E
Sbjct: 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELL 229
Query: 1008 -EEKKEEEEKEEEEKKRRRIRR 1028
E++ E +KE E++ +
Sbjct: 230 KEKEALERQKEAIERQLASLEE 251
Score = 30.0 bits (68), Expect = 7.7
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE-EKKKKKKEE 1003
RR+ +G E + +K+K ++ EE E+ + +EK+++ E ++++K E
Sbjct: 153 VERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAER 212
Query: 1004 EKEEEEKKEEEE-------KEEEEKKRRRIRRKR 1030
+ ++K E E KE E+++ I R+
Sbjct: 213 YQALLKEKREYEGYELLKEKEALERQKEAIERQL 246
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 54.0 bits (130), Expect = 6e-08
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK--EEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+ K +++E + EE K+EE+E E K K EK+ EE EE+ +++ EE +E EK+
Sbjct: 51 AKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKET 110
Query: 1013 EEEKEEEEKK 1022
EE+ E +K
Sbjct: 111 EEKTESNVEK 120
Score = 52.4 bits (126), Expect = 2e-07
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK---KKKEEEKEEEE 1009
++ +E+E +K +++ E EE K++E + E K+++ + +K+ ++E E+E+EE
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Query: 1010 KKEEEEKEEEEKK 1022
+E EKE EEK
Sbjct: 102 SSDENEKETEEKT 114
Score = 50.9 bits (122), Expect = 7e-07
Identities = 21/68 (30%), Positives = 38/68 (55%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
E EE +++++E E+++ K + + + EE ++E EEE ++ E EKE EEK E
Sbjct: 58 ETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESN 117
Query: 1015 EKEEEEKK 1022
++E
Sbjct: 118 VEKEITNP 125
Score = 49.3 bits (118), Expect = 2e-06
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
KEEE+E E+K+ + + +K+ E ++ E++ EE ++ +K+ EE+ E +KE
Sbjct: 65 VKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITN 124
Query: 1016 KE 1017
Sbjct: 125 PS 126
Score = 47.4 bits (113), Expect = 1e-05
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
+ E+E KK + +T + E+ KEEE+E + +E+K + EK++EE +EE E+
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEE 97
Score = 47.0 bits (112), Expect = 1e-05
Identities = 17/68 (25%), Positives = 42/68 (61%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
S ++ ++++ +K ++E + +E K +++E E++E K ++E++E EE+ EEE
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEE 98
Query: 1015 EKEEEEKK 1022
++E ++
Sbjct: 99 DEESSDEN 106
Score = 39.3 bits (92), Expect = 0.005
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
++ ++E K +++ E EE K+++K+ E++E K + EKE+EE +
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEE 93
Score = 38.6 bits (90), Expect = 0.008
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
E++E+K EK+ EE E++ +E + ++ ++E EEK + E+E K
Sbjct: 74 NSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWK 128
Score = 33.2 bits (76), Expect = 0.43
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
S +E++ + +KE+++ EEE +++ E + + EK+ EE+ E +K+
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 29.7 bits (67), Expect = 5.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+ ++ +E+E KK +E + EE K+EE+E E K
Sbjct: 37 PSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDK 78
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide independent.
Length = 171
Score = 52.4 bits (125), Expect = 1e-07
Identities = 34/117 (29%), Positives = 72/117 (61%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKK 970
+RR++R +R + + RR + + R R +RR R RR + ++EEE ++KEEK
Sbjct: 31 KRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKA 90
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
K + E+++K+ + ++E +K++EE + + ++E E+ E+++ ++ E+E+ R+ R
Sbjct: 91 KRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKR 147
Score = 46.2 bits (109), Expect = 2e-05
Identities = 35/130 (26%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
RR+ R ++ + + RR + + R R +RR R RR RR+ R R + +
Sbjct: 32 RRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAK 91
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+ EE++K+E++++E +K+KE + E + EE E+ + ++E+ ++ E++ E K+
Sbjct: 92 RKAEEEEKQEQEEQERIQKQKE----EAEARAREEAERMRLEREKHFQQIEQERLERKKR 147
Query: 1019 EEKKRRRIRR 1028
E+ +R R+
Sbjct: 148 LEEIMKRTRK 157
Score = 45.1 bits (106), Expect = 4e-05
Identities = 34/127 (26%), Positives = 72/127 (56%), Gaps = 3/127 (2%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
+ R + +RR+ R +R + + RR + + R R +RR R +EEE +++
Sbjct: 21 AEEATRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEE 80
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE---EEKKR 1023
E +++EE+ K+K + +K+E++++E +K+K++ E EE ++ E+E+ + ++
Sbjct: 81 ERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQE 140
Query: 1024 RRIRRKR 1030
R R+KR
Sbjct: 141 RLERKKR 147
Score = 44.3 bits (104), Expect = 6e-05
Identities = 37/141 (26%), Positives = 76/141 (53%), Gaps = 2/141 (1%)
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
+RR+ R +E+EE++++E R R + +RR+ R RR RR+ R R + +
Sbjct: 31 KRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKA 90
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE--EKKKEEEEKKKKEGKTKKEEKKKEEEE 994
+R+ ++ + + R ++EE E + +E E+ + E EK ++ + ++ E+KK EE
Sbjct: 91 KRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKRLEE 150
Query: 995 EKKKKKKEEEKEEEEKKEEEE 1015
K+ +K E + +K++ +
Sbjct: 151 IMKRTRKSEVSPQVKKEDPKV 171
Score = 37.8 bits (87), Expect = 0.011
Identities = 31/140 (22%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 840 RRRRRGKKEEEKKKKKEEE-------EEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKK 892
RR+ R ++E+E+++++E+E EE + EE RR+ +E+EEK K
Sbjct: 32 RRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAK 91
Query: 893 KEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
++ ++ + ++ R +++ R R R R R + ++ + R R++R
Sbjct: 92 RKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKRLEEI 151
Query: 953 RRSGKEEEEEEKKKEEKKKE 972
+ ++ E + K+E K
Sbjct: 152 MKRTRKSEVSPQVKKEDPKV 171
Score = 33.1 bits (75), Expect = 0.41
Identities = 31/153 (20%), Positives = 75/153 (49%), Gaps = 13/153 (8%)
Query: 843 RRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRR 902
+R + E+++++++E E E++ R R + EE+ ++E RR
Sbjct: 31 KRRQAREQREQEEQERREQEEQD----------RLEREELKRRAAEERLRRE---EEARR 77
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
+ ++R R + +++R+ ++ + + R ++++ R R R R K ++
Sbjct: 78 QEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQI 137
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
E+++ E+KK EE K+ K++ + K+E+ +
Sbjct: 138 EQERLERKKRLEEIMKRTRKSEVSPQVKKEDPK 170
Score = 32.4 bits (73), Expect = 0.77
Identities = 24/133 (18%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRR-RSRRRRSRRRRRRRRRRRRRRRRRR 933
R + + R +EE+++ ++E R R +R +RR+ R R + + +R+
Sbjct: 39 REQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEE 98
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
++ + + R ++++ R + E ++++ ++ E+E+ +++ + ++ K+ +
Sbjct: 99 KQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKRLEEIMKRTRKS 158
Query: 994 EEKKKKKKEEEKE 1006
E + KKE+ K
Sbjct: 159 EVSPQVKKEDPKV 171
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 55.0 bits (132), Expect = 1e-07
Identities = 52/219 (23%), Positives = 99/219 (45%), Gaps = 18/219 (8%)
Query: 816 RRGRRRRRRKKK-----EEKKKWKRRG------GGRRRRRGKKEEEKKKKKEEEEEGGEK 864
R RR RR ++ E +K++K RR + E + +EEE+E +
Sbjct: 62 RLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESRE 121
Query: 865 EEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRR 924
E EE G + ++ ++ EE +K+E + KR + +
Sbjct: 122 EREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKH 181
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK---EEEEKKKKEG 981
R + + + +++++ + E EE +KK+EE++K EEE+++K+E
Sbjct: 182 TENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQE- 240
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+ ++K EEEEK++ K+E E+ E E+ +K E+
Sbjct: 241 ---EADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPED 276
Score = 52.0 bits (124), Expect = 1e-06
Identities = 42/181 (23%), Positives = 79/181 (43%), Gaps = 20/181 (11%)
Query: 840 RRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGR 899
R RRR ++EE+ ++K+EE G + E + S +E +
Sbjct: 9 RERRRREREEQLRQKQEEGSLGQVTTQVEVNSQNSVPDEESKTSTDDEAALLE------- 61
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
R +RR RR R R++ + + RR + SG E
Sbjct: 62 -------------RLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAEN 108
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E E++++E+ +EE E+ ++ K E+K + + ++ +K+E+E E EE+++ + E
Sbjct: 109 ETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLE 168
Query: 1020 E 1020
E
Sbjct: 169 E 169
Score = 47.3 bits (112), Expect = 3e-05
Identities = 36/166 (21%), Positives = 72/166 (43%), Gaps = 4/166 (2%)
Query: 865 EEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRR----R 920
++EE RRR R + +++EE + + + S
Sbjct: 2 DDEEEAARERRRREREEQLRQKQEEGSLGQVTTQVEVNSQNSVPDEESKTSTDDEAALLE 61
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
R RR RR R R++ + + + +E+ + E +EEE+++ +E
Sbjct: 62 RLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESRE 121
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
+ + EE + + E+K ++ E+ ++E+KE E +EEE+ KR +
Sbjct: 122 EREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSL 167
Score = 45.4 bits (107), Expect = 1e-04
Identities = 47/226 (20%), Positives = 84/226 (37%), Gaps = 16/226 (7%)
Query: 814 RNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
R RR R + R+K+EE + + +E+ K ++E +
Sbjct: 11 RRRREREEQLRQKQEEGSLGQVTTQVEVNSQNSVPDEESKTSTDDEAALLER-------L 63
Query: 874 GRRRRRRRRSGKEEEEKKKK------EGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
RR RR E E++K+ + RR ++ + + R R
Sbjct: 64 ARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEEEKEESREER 123
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE 987
+ ++ R ++ + E EEE+K + EE + K K E
Sbjct: 124 EEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTE 183
Query: 988 K---KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ E + + KE EK +++++E + EE KK+R RRK
Sbjct: 184 NTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKV 229
Score = 41.6 bits (97), Expect = 0.002
Identities = 40/174 (22%), Positives = 74/174 (42%), Gaps = 33/174 (18%)
Query: 840 RRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGR 899
R ++EEK+ + EEEE+ EE G + K E + G G
Sbjct: 141 WRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKL------KHTENTFSRGGAEGA 194
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
+ K+ + ++++ +++R RR+ EE
Sbjct: 195 QVEAGKEFEKLKQKQQEAALELEELKKKREERRKVL----------------------EE 232
Query: 960 EEEEKKKEE--KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
EE+ +K+EE +K EEE+K++ K+E +++ E +K++K E+ E+KK
Sbjct: 233 EEQRRKQEEADRKSREEEEKRRL---KEEIERRRAEAAEKRQKVPEDGLSEDKK 283
Score = 29.6 bits (66), Expect = 8.7
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 804 KVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGE 863
K+ T+ SR + K+ EK K K++ KK+ E+++K EEEE
Sbjct: 178 KLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRR 237
Query: 864 KEEEEGGGGGGRRRRRRRRSGKEEEEKKKKE 894
K+EE R +R KEE E+++ E
Sbjct: 238 KQEE---ADRKSREEEEKRRLKEEIERRRAE 265
>gnl|CDD|223049 PHA03334, PHA03334, putative DNA polymerase catalytic subunit;
Provisional.
Length = 1545
Score = 55.2 bits (133), Expect = 2e-07
Identities = 52/214 (24%), Positives = 75/214 (35%), Gaps = 46/214 (21%)
Query: 482 TGEANKGKGRKKAAYSGGLVLEPKKGF-----YDKFIILMDFNSLYPSIIQEYNIC---- 532
E R+K GG V P G Y + +DF SLYPS + + NI
Sbjct: 619 MPEKYARDCRQKIKLKGGYVFAPLTGLTFAGPYQGTELTLDFASLYPSNMCDANISPEAI 678
Query: 533 ----------------FTTIPVRMLQDSDITTLCEYLPE------HQVDTGILPSEIKKL 570
+ I + + + T+ PE T S +
Sbjct: 679 VDPDCTARVRGWVVFDWKKIDRGFGKATLMYTILRTKPEEPSWRRFTTYTT---SSLNHY 735
Query: 571 VESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAA-LVT 629
+ R + K MKQ L ++ Q +K+ ANS YG A L+T
Sbjct: 736 LSMRTEYKGAMKQAK-DPKLKSYHNQLQNEMKICANSHYGV---------APHACQHLIT 785
Query: 630 AKGR-EILLNTKSLVENLNYEVIYGDTDSLMISC 662
GR +I L + + + V YGDTDS+M
Sbjct: 786 TLGRHKIKLVEEFIKKEPGMTVNYGDTDSVMFQL 819
>gnl|CDD|144437 pfam00841, Protamine_P2, Sperm histone P2. This protein also known
as protamine P2 can substitute for histones in the
chromatin of sperm. The alignment contains both the
sequence of the mature P2 protein and its propeptide.
Length = 91
Score = 49.6 bits (118), Expect = 2e-07
Identities = 34/83 (40%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 868 EGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
E G ++R G+E+ + GR R R R SRRR R RRRR
Sbjct: 11 ESPHQGYGQQREGEEQGQEQGLSPEDVEVYGRTHRGHYHYRH--RSCSRRRLYRIHRRRR 68
Query: 928 RRRRRRRRRRRRRRRRRRRRRRR 950
RRRRRR R RRR RR RRR
Sbjct: 69 SCRRRRRRSCRHRRRHRRGCRRR 91
Score = 44.6 bits (105), Expect = 1e-05
Identities = 27/76 (35%), Positives = 34/76 (44%)
Query: 878 RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
+ G++ E +++ + G R R R R RRR R RRRR R
Sbjct: 12 SPHQGYGQQREGEEQGQEQGLSPEDVEVYGRTHRGHYHYRHRSCSRRRLYRIHRRRRSCR 71
Query: 938 RRRRRRRRRRRRRRRR 953
RRRRR R RRR RR
Sbjct: 72 RRRRRSCRHRRRHRRG 87
Score = 33.8 bits (77), Expect = 0.073
Identities = 25/87 (28%), Positives = 35/87 (40%)
Query: 840 RRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGR 899
R R + + ++ E EE G+++ R R ++
Sbjct: 5 RVRSPSESPHQGYGQQREGEEQGQEQGLSPEDVEVYGRTHRGHYHYRHRSCSRRRLYRIH 64
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRR 926
RRRR +RRR R R RRR RR RRR
Sbjct: 65 RRRRSCRRRRRRSCRHRRRHRRGCRRR 91
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK motif.
Length = 189
Score = 52.0 bits (125), Expect = 2e-07
Identities = 30/95 (31%), Positives = 56/95 (58%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
++R + ++ RR++R R R+ +E+ E E+K+EE+ +EE EKKK+E + K+
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
E++ +E+E+ +K K EEE ++ +EE
Sbjct: 65 EEQARKEQEEYEKLKSSFVVEEEGTDKLSADEESN 99
Score = 50.1 bits (120), Expect = 8e-07
Identities = 30/109 (27%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
++R + ++ RR++R R R++ K E E ++++E +++ E++K+++E K +
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
Query: 985 KEEKKKEEEEEKKKKKK---EEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+E+ +KE+EE +K K EEE ++ +EE E E I+ K+
Sbjct: 65 EEQARKEQEEYEKLKSSFVVEEEGTDKLSADEESNELLEDFINYIKLKK 113
Score = 40.8 bits (96), Expect = 0.001
Identities = 22/67 (32%), Positives = 48/67 (71%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
KK KK+ + E+K+ + ++ E+++ EE +K ++K+E E++EEE+ EEE ++++E++
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 1024 RRIRRKR 1030
R+ R ++
Sbjct: 61 RKEREEQ 67
Score = 37.0 bits (86), Expect = 0.025
Identities = 21/102 (20%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
G ++R + ++++ R++R R R++ +R R+ R +++ R
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
+EE + K++EE EK K ++E K +E+
Sbjct: 64 REE------QARKEQEEYEKLKSSFVVEEEGTDKLSADEESN 99
Score = 34.7 bits (80), Expect = 0.12
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 884 GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
K +K+ K RR++R+ R R++ +R R+ R +++
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEE--EREERKKLEEKREGERKEEEELEEEREKKKEE 58
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
R+ R + R KE+EE EK K EEE K
Sbjct: 59 EERKEREEQAR--KEQEEYEKLKSSFVVEEEGTDKLSA 94
Score = 30.4 bits (69), Expect = 3.4
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 816 RRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEE 868
R R++ +++ + + K R KKEEE++K++EE+ KE+EE
Sbjct: 25 EEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQA---RKEQEE 74
Score = 30.1 bits (68), Expect = 4.9
Identities = 20/79 (25%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 816 RRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGR 875
+ G ++R + ++++ ++ +R R KK EEK++ + +EEE E+E E+
Sbjct: 2 KIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREK------- 54
Query: 876 RRRRRRRSGKEEEEKKKKE 894
++ R +EE+ +K++E
Sbjct: 55 KKEEEERKEREEQARKEQE 73
Score = 28.9 bits (65), Expect = 9.4
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 842 RRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRR 901
++ K EEK+ ++++ E EEEE R R++ K E E+K++E
Sbjct: 5 AKKRAKLEEKQARRQQR----EAEEEE-------REERKKLEEKREGERKEEE----ELE 49
Query: 902 RRRKKRRRSRRRRSRRRRRRR 922
R+K++ R+ R + R+
Sbjct: 50 EEREKKKEEEERKEREEQARK 70
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 54.7 bits (132), Expect = 2e-07
Identities = 45/216 (20%), Positives = 88/216 (40%), Gaps = 10/216 (4%)
Query: 810 IRLSRNRRGRRRRRRKKKEEKKKW--KRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE 867
L + ++ +E K++ + +K EEK ++ EE E +KE E
Sbjct: 217 PELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIE 276
Query: 868 EGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
E + + + +E+ ++ + R +R SR R
Sbjct: 277 E-------LEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE 987
+ + R +++ + +R + E E+ K +K++ E KK+ G T ++
Sbjct: 330 IKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKL 389
Query: 988 KKKEEEEEKKKKKKEEEKEE-EEKKEEEEKEEEEKK 1022
+K+ EE EK K++ EEE + + E +KE +E K
Sbjct: 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELK 425
Score = 53.9 bits (130), Expect = 4e-07
Identities = 35/206 (16%), Positives = 83/206 (40%), Gaps = 1/206 (0%)
Query: 820 RRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE-EGGGGGGRRRR 878
+ +++ E +K+ +R +KE+E ++ E E + E +
Sbjct: 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
+ KEE E+ +KE +R+ + + ++ + + + +
Sbjct: 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKE 290
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
+ + E E+ + E++ E++ KE + K+E ++ +++ K+
Sbjct: 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKEL 350
Query: 999 KKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+K+ EE EE + EE K ++E+ R
Sbjct: 351 EKRLEELEERHELYEEAKAKKEELER 376
Score = 53.9 bits (130), Expect = 4e-07
Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 24/223 (10%)
Query: 812 LSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGG 871
+S R K ++E K+ + K+E E+ +K+ E EG +++ EE
Sbjct: 212 ISSELPELREELEKLEKEVKELEEL---------KEEIEELEKELESLEGSKRKLEEK-- 260
Query: 872 GGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRR 931
R R ++E ++ +E + + K + + + R
Sbjct: 261 ---IRELEERIEELKKEIEELEE------KVKELKELKEKAEEYIKLSEFYEEYLDELRE 311
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE 991
+R R R + +E EE KKK ++ ++ E+ ++ + +E K K+
Sbjct: 312 IEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKK 371
Query: 992 EEEEKKKKKKEEEKEEEEKKE----EEEKEEEEKKRRRIRRKR 1030
EE E+ KK+ E+ +KE E+ KEE E++ +I +
Sbjct: 372 EELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI 414
Score = 45.8 bits (109), Expect = 1e-04
Identities = 25/105 (23%), Positives = 47/105 (44%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT 983
R R + + + + EE E+E + E K + E+K +E +
Sbjct: 207 REINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
+ EE KKE EE ++K K+ +E +E+ ++ + E E+ +R
Sbjct: 267 RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELRE 311
Score = 45.8 bits (109), Expect = 1e-04
Identities = 51/224 (22%), Positives = 89/224 (39%), Gaps = 12/224 (5%)
Query: 817 RGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRR 876
R R + K+E ++ + + + + K EE K + EE E E E
Sbjct: 262 RELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
+E E+K++ +++ + ++R + ++ R ++R
Sbjct: 322 EINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL 381
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK------ 990
+ + + KEE EEE K + E +K+ KE K EE KK
Sbjct: 382 TGLTPEKLEKELEELEKA--KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCP 439
Query: 991 ----EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E EE +K+ EE E ++ E+E KE EEK+R+ + R
Sbjct: 440 VCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELR 483
Score = 45.8 bits (109), Expect = 1e-04
Identities = 29/130 (22%), Positives = 58/130 (44%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
+ +++ R + R + + + R R + KE
Sbjct: 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+E E+ KEE ++ E+E + EG +K E+K E EE+ ++ K+E +E EEK +E ++ +E
Sbjct: 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKE 290
Query: 1020 EKKRRRIRRK 1029
+ + +
Sbjct: 291 KAEEYIKLSE 300
Score = 45.4 bits (108), Expect = 1e-04
Identities = 53/282 (18%), Positives = 120/282 (42%), Gaps = 24/282 (8%)
Query: 761 SLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRR 820
L+++++ + E +++++ +++ E+ +++ + E + I+LS
Sbjct: 256 KLEEKIRELEERIEELKKEIE---------ELEEKVKELKELKEKAEEYIKLSEFYEEYL 306
Query: 821 RRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRR 880
R+ ++ + + G R + EE++++ +E +++ E E+
Sbjct: 307 DELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE 366
Query: 881 RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
++ KEE E+ KK G + K+ + + + R ++ + ++
Sbjct: 367 AKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKK 426
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKK--------------KEEKKKEEEEKKKKEGKTKKE 986
++ + + G+E EE +K KE K+ EE+E+K ++ + E
Sbjct: 427 AIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE 486
Query: 987 EKKKEEEEEKKKKKKEEE-KEEEEKKEEEEKEEEEKKRRRIR 1027
+ K+E E K K+ E+ KE EEK ++ EE EKK
Sbjct: 487 KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYE 528
Score = 43.5 bits (103), Expect = 5e-04
Identities = 48/207 (23%), Positives = 82/207 (39%), Gaps = 6/207 (2%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRS 883
K KE+ K K ++ K EE KKK E E++ E EEE +
Sbjct: 528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA-----ELLKELEEL 582
Query: 884 GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
G E E+ ++ + + R + ++ + +R
Sbjct: 583 GFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
R+ EEE E+ +EE + E + ++ EK++EE ++ +K KEE
Sbjct: 643 EELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEE 702
Query: 1004 EKEEEEKKEEEEKEEEEKKR-RRIRRK 1029
+E E+ K+E EK E+ +R +R K
Sbjct: 703 LEEREKAKKELEKLEKALERVEELREK 729
Score = 42.7 bits (101), Expect = 0.001
Identities = 38/184 (20%), Positives = 72/184 (39%), Gaps = 1/184 (0%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEE-EKKKKEGGGGRRRRRR 904
K ++ ++ E++ E EK +E+ G + ++ K EE +KK E
Sbjct: 511 KLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEE 570
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
+ + R + + + R + K EEE +K
Sbjct: 571 ELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDK 630
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
EE + E+ ++ + ++ EKK EEE ++ +++ E E E EE EK+R
Sbjct: 631 AFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRRE 690
Query: 1025 RIRR 1028
I++
Sbjct: 691 EIKK 694
Score = 41.6 bits (98), Expect = 0.002
Identities = 54/211 (25%), Positives = 100/211 (47%), Gaps = 10/211 (4%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRS 883
+ KKEE ++ K+R G + +KE E+ +K +EE E + G + + +++
Sbjct: 368 KAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKA 427
Query: 884 GKEEEEKKKKEGGGGR-----RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
+E ++ K K GR R+ + + +R + + + R+ R+ R +
Sbjct: 428 IEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEK 487
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKK---KEEKKKEEEEKKKKE--GKTKKEEKKKEEE 993
++ + + KE EE+ KK +E +KK EE +K KE K K E K ++E
Sbjct: 488 VLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKE 547
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
EK ++ K++ E E+K +E E+E E +
Sbjct: 548 LEKLEELKKKLAELEKKLDELEEELAELLKE 578
Score = 40.4 bits (95), Expect = 0.005
Identities = 30/159 (18%), Positives = 59/159 (37%), Gaps = 5/159 (3%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
+ +RR E+ K+ + + + ++ R R + +
Sbjct: 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV 230
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE-----EKKKEEEEKKKKEGKTKKEEKK 989
+ + + G + + EEK +E E+ K+E E+ +++ K KE K+
Sbjct: 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKE 290
Query: 990 KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
K EE K + EE +E + E+ EE+ R
Sbjct: 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
Score = 37.7 bits (88), Expect = 0.036
Identities = 44/201 (21%), Positives = 71/201 (35%), Gaps = 13/201 (6%)
Query: 818 GRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRR 877
+ KK +E ++ G + E+ +++ +E E E E
Sbjct: 556 KKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELE 615
Query: 878 RRRRRSGKEEEEKKKKE----GGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
R + K EEE K R RK+ ++ S R R
Sbjct: 616 REEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSREL 675
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
R +RR +E ++ +K +E+ +E E+ KK+ K +K ++ EE
Sbjct: 676 AGLRAELEELEKRR---------EEIKKTLEKLKEELEEREKAKKELEKLEKALERVEEL 726
Query: 994 EEKKKKKKEEEKEEEEKKEEE 1014
EK KK K KE K E
Sbjct: 727 REKVKKYKALLKERALSKVGE 747
Score = 31.6 bits (72), Expect = 2.9
Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 33/235 (14%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEE--------GGEKEEEEGGGGGGR 875
K KEE ++ + R K+ +E KK EE ++ G E EE
Sbjct: 397 EKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEE 456
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR----- 930
+R KE +E ++KE R+ R+ + ++ + + + +
Sbjct: 457 YTAELKRIEKELKEIEEKE----RKLRKELRELEKVLKKESELIKLKELAEQLKELEEKL 512
Query: 931 --------RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE----EKKKEEEEKKK 978
++ + + + + + + + E+ EE KK+ EKK +E E++
Sbjct: 513 KKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL 572
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE----KKEEEEKEEEEKKRRRIRRK 1029
E + EE E EE +++ KE E E K E+E E EEK+ +++ +
Sbjct: 573 AELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEE 627
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal DNA
during the process of transcription.
Length = 193
Score = 52.0 bits (125), Expect = 2e-07
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
G E E EK+ K ++E E +++E K KK KKKE ++EKK+KK ++EK E K +
Sbjct: 127 ELGSESETSEKETTAKVEKEAEVEEEEKKEKK--KKKEVKKEKKEKKDKKEKMVEPKGSK 184
Query: 1014 EEKEEEEKK 1022
++K++++KK
Sbjct: 185 KKKKKKKKK 193
Score = 50.5 bits (121), Expect = 7e-07
Identities = 25/65 (38%), Positives = 45/65 (69%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
E + E +K+ K +KE + +EEE+++KKKKKE +KE++EKK+++EK E K ++
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Query: 1026 IRRKR 1030
++K+
Sbjct: 186 KKKKK 190
Score = 47.8 bits (114), Expect = 5e-06
Identities = 21/71 (29%), Positives = 49/71 (69%), Gaps = 2/71 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK--KEEE 1014
E + E +KE K +KE + ++EEKK+++++++ KK+K+E+K+++EK + +
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKG 182
Query: 1015 EKEEEEKKRRR 1025
K++++KK+++
Sbjct: 183 SKKKKKKKKKK 193
Score = 47.4 bits (113), Expect = 8e-06
Identities = 25/51 (49%), Positives = 38/51 (74%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
+ + E EEE+KKE+KKK+E +K+KKE K KKE+ + + +KKKKKK++
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 44.7 bits (106), Expect = 6e-05
Identities = 24/61 (39%), Positives = 43/61 (70%), Gaps = 3/61 (4%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+ + K E+E E ++EEKK E+KKKKE K +K+EKK ++E+ + K +++K++++K
Sbjct: 136 EKETTAKVEKEAEVEEEEKK---EKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Query: 1011 K 1011
K
Sbjct: 193 K 193
Score = 36.2 bits (84), Expect = 0.042
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E + E+E K +KE E EEEEKKE+++K+E +K+++ + K+
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174
Score = 31.6 bits (72), Expect = 1.5
Identities = 12/40 (30%), Positives = 29/40 (72%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK 988
++ +++ + ++E+++KK++K+K E K K+ K KK++K
Sbjct: 154 KKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 31.2 bits (71), Expect = 1.8
Identities = 14/52 (26%), Positives = 32/52 (61%)
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+ E + E+E K +K+ E +EEE+K+++++KE +++K+ + +K
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174
Score = 30.1 bits (68), Expect = 4.4
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK 985
++ +++++ K+E++E+K K+EK E + KKK+ K KK
Sbjct: 154 KKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 30.1 bits (68), Expect = 4.5
Identities = 14/40 (35%), Positives = 29/40 (72%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK 989
++ ++ KE ++E+K+K++KK++ E K + K KK++KK
Sbjct: 154 KKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
>gnl|CDD|219406 pfam07420, DUF1509, Protein of unknown function (DUF1509). This
family consists of several uncharacterized viral
proteins from the Marek's disease-like viruses. Members
of this family are typically around 400 residues in
length. The function of this family is unknown.
Length = 377
Score = 52.7 bits (126), Expect = 5e-07
Identities = 27/86 (31%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 880 RRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
R + + + GG RR S RR RRR R R R R R RR RRR
Sbjct: 292 RAGTPDDGSAISEDSAGGSHHTMRRPPHSTSGERRGRRRNRSESRSRSRSRSGSRRYRRR 351
Query: 940 RRRRRRRRRRRRRRRS--GKEEEEEE 963
R R RR R+ + E +
Sbjct: 352 RGRGVPGRRSESRQDTVLVSSSEASD 377
Score = 37.7 bits (87), Expect = 0.028
Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 865 EEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRR 924
E+ GG RR SG E++ + R R + R SRR R RR R R
Sbjct: 304 EDSAGGSHHTMRRPPHSTSG----ERRGRRRNRSESRSRSRSRSGSRRYRRRRGRGVPGR 359
Query: 925 RRRRR 929
R R
Sbjct: 360 RSESR 364
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 52.1 bits (125), Expect = 6e-07
Identities = 26/43 (60%), Positives = 27/43 (62%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
R RSR RR+ RRRR RRRRRRRR R RR R RR RR
Sbjct: 292 RGTTYRSRVRRATRRRRTTRRRRRRRRTAPARVRRVRTRRGRR 334
Score = 51.8 bits (124), Expect = 1e-06
Identities = 26/43 (60%), Positives = 26/43 (60%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
R RSR RR RRRR RRRRRRRR R RR R RR RR
Sbjct: 292 RGTTYRSRVRRATRRRRTTRRRRRRRRTAPARVRRVRTRRGRR 334
Score = 50.2 bits (120), Expect = 3e-06
Identities = 25/44 (56%), Positives = 25/44 (56%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R R R RR RRRR RRRRRRRR R RR R RR RR
Sbjct: 291 YRGTTYRSRVRRATRRRRTTRRRRRRRRTAPARVRRVRTRRGRR 334
Score = 49.1 bits (117), Expect = 7e-06
Identities = 24/43 (55%), Positives = 25/43 (58%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R + R R RR RRRR RRRRRRRR R RR R RR R
Sbjct: 292 RGTTYRSRVRRATRRRRTTRRRRRRRRTAPARVRRVRTRRGRR 334
Score = 48.7 bits (116), Expect = 8e-06
Identities = 25/43 (58%), Positives = 26/43 (60%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R + R R RR RRRR RRRRRRRR R RR R RR RR
Sbjct: 292 RGTTYRSRVRRATRRRRTTRRRRRRRRTAPARVRRVRTRRGRR 334
Score = 48.3 bits (115), Expect = 1e-05
Identities = 24/45 (53%), Positives = 26/45 (57%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
G R R + RR+ RRR RRRRRRRR R RR R RR RR
Sbjct: 290 GYRGTTYRSRVRRATRRRRTTRRRRRRRRTAPARVRRVRTRRGRR 334
Score = 47.9 bits (114), Expect = 2e-05
Identities = 23/43 (53%), Positives = 24/43 (55%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R R R RR RRRR RRRRRRRR R RR R R G+
Sbjct: 291 YRGTTYRSRVRRATRRRRTTRRRRRRRRTAPARVRRVRTRRGR 333
Score = 32.1 bits (73), Expect = 1.4
Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 16/53 (30%)
Query: 873 GGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRR 925
RR RRR R RRR++RRR+ R RR R RR RR
Sbjct: 298 SRVRRATRRR----------------RTTRRRRRRRRTAPARVRRVRTRRGRR 334
Score = 30.6 bits (69), Expect = 4.7
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+ K+E K + + KK+KK EEK+E + +E E RRR++ K
Sbjct: 22 RPVKDEAKPRKIKRVKKRKKREEKDELD--DEVEFVRSFAPRRRVQWK 67
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 52.5 bits (126), Expect = 7e-07
Identities = 18/114 (15%), Positives = 41/114 (35%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
++R R + + ++ RR R R R ++ R + K E + KK
Sbjct: 289 EQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKK 348
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+ +K+ E++ ++ ++ K ++K + E+ E
Sbjct: 349 EIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSE 402
Score = 51.0 bits (122), Expect = 2e-06
Identities = 18/137 (13%), Positives = 48/137 (35%), Gaps = 13/137 (9%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRR-------------RRRRRRRRRRRRRRRRRRRRR 947
+R + R + + +++ RR R R ++ R + + R++
Sbjct: 289 EQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKK 348
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
++RR+ + E E ++E + ++ K++ + + + EE +
Sbjct: 349 EIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENEESKG 408
Query: 1008 EEKKEEEEKEEEEKKRR 1024
+ E E +
Sbjct: 409 SPPQVEATTTAEPNREP 425
Score = 50.2 bits (120), Expect = 3e-06
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 10/106 (9%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
+R + R +++ ++ RR R R + E + E KK E K + K
Sbjct: 289 EQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAE-KNEAKARK 347
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
KE +K++ E+E + +E + R R +
Sbjct: 348 KEI---------AQKRRAAEREINREARQERAAAMARARARRAAVK 384
Score = 49.5 bits (118), Expect = 7e-06
Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 9/145 (6%)
Query: 880 RRRSGKEEEEKKKKEGGGGRRRRRRKKRRRS-----RRRRSRRRRRRRRRRRRRRRRRRR 934
+R+ E++K+KK R+ R R R ++ R + +
Sbjct: 289 EQRAQYREKQKEKKA----FLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAK 344
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
R++ ++RR R R + +E + ++ + KKK E E E
Sbjct: 345 ARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENE 404
Query: 995 EKKKKKKEEEKEEEEKKEEEEKEEE 1019
E K + E + E +E+
Sbjct: 405 ESKGSPPQVEATTTAEPNREPSQED 429
Score = 44.8 bits (106), Expect = 2e-04
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 16/115 (13%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR 878
+R + R+K++EKK + RR R + + E E +
Sbjct: 290 QRAQYREKQKEKKAFLW---TLRRNRLRMIITPWRAPELHAEN-------------AEIK 333
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
+ R + K E + +KKE RR R+ R +R+ R+ R R RR + +++
Sbjct: 334 KTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKK 388
Score = 44.1 bits (104), Expect = 3e-04
Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 48/189 (25%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR 878
+R + ++K+++KK RR R + + E E +
Sbjct: 289 EQRAQYREKQKEKKAFLW--TLRRNRLRMIITPWRAPELHAE-------------NAEIK 333
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
+ R + K E + +KKE +KRR + R +R R+ R R R RR +
Sbjct: 334 KTRTAEKNEAKARKKE--------IAQKRRAAEREINREARQERAAAMARARARRAAVK- 384
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
KKK E E + K + E +
Sbjct: 385 ------------------------AKKKGLIDASPNEDTPSENEESKGSPPQVEATTTAE 420
Query: 999 KKKEEEKEE 1007
+E +E+
Sbjct: 421 PNREPSQED 429
Score = 40.6 bits (95), Expect = 0.004
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 36/116 (31%)
Query: 816 RRGRRRRRRKKKEEKKKWKRRGGGR-------------------RRRRGKKEEEKKKKKE 856
+R + R ++K+K+ RR R + R +K E K +KKE
Sbjct: 290 QRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKE 349
Query: 857 EEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRR 912
++ RR R +E +++ R R RR + ++
Sbjct: 350 IAQK---------------RRAAEREINREARQERAAA--MARARARRAAVKAKKK 388
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 52.8 bits (127), Expect = 8e-07
Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 10/226 (4%)
Query: 798 KAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEE 857
+ E ++ + ++ +R R++ EE +K R + EE K++ EE
Sbjct: 474 ELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEE 533
Query: 858 EEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRR 917
+ E E EE + + + + +EE ++ E R + K R R
Sbjct: 534 KLEKLENLLEEL-----EELKEKLQLQQLKEELRQLE-----DRLQELKELLEELRLLRT 583
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
R+ R R + +++ + R + + + E E E+ +EE + E E+
Sbjct: 584 RKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLN 643
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
+ + + EE EEK ++ + E + E ++ E EE+ EE+ +
Sbjct: 644 LQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEE 689
Score = 49.8 bits (119), Expect = 7e-06
Identities = 39/203 (19%), Positives = 72/203 (35%), Gaps = 12/203 (5%)
Query: 828 EEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEE 887
E+ +K + K EE + + E E E E +E
Sbjct: 167 EKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLE------------ALEEELKE 214
Query: 888 EEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
+K ++ ++ R + + R + R + R
Sbjct: 215 LKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREE 274
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
R R +E EE+ ++ EE ++E EE +++ + ++ EE EK K +E ++
Sbjct: 275 ELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKL 334
Query: 1008 EEKKEEEEKEEEEKKRRRIRRKR 1030
EEK E+ E E EE + +
Sbjct: 335 EEKLEKLESELEELAEEKNELAK 357
Score = 48.2 bits (115), Expect = 2e-05
Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 3/188 (1%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
K+ ++ K K EE EG E E + K+ EE ++++ +
Sbjct: 177 KEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEA 236
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR---RRRRSGKEEEEE 962
R + R + R + R R R + EE
Sbjct: 237 LEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEEL 296
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E++ EE ++E E + + ++ +K + EE+ +K +E+ ++ E + EE +E+ E
Sbjct: 297 EREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELA 356
Query: 1023 RRRIRRKR 1030
+ R +
Sbjct: 357 KLLEERLK 364
Score = 47.4 bits (113), Expect = 4e-05
Identities = 39/226 (17%), Positives = 81/226 (35%), Gaps = 17/226 (7%)
Query: 814 RNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
R ++ + +E K+ ++ EE +K+ EE E E+ EEE
Sbjct: 378 EKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEE----- 432
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGR-------RRRRRKKRRRSRRRRSRRRRRRRRRRR 926
++ + + E +E E G + + +
Sbjct: 433 -IKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELS 491
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK----KKEEEEKKKKEGK 982
R + R + R + EE +++ EEK + EE ++ + K
Sbjct: 492 REKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEK 551
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
+ ++ K+E + + + ++ +E EE + KEE E+ R R++
Sbjct: 552 LQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKE 597
Score = 46.3 bits (110), Expect = 9e-05
Identities = 46/185 (24%), Positives = 71/185 (38%), Gaps = 4/185 (2%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
++E ++ KK EE +E E+EE E R KE E+ K
Sbjct: 209 EEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKAR----LLEIESL 264
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
+ + R R R + R R R + EE EK
Sbjct: 265 ELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKL 324
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
K +++ E+ ++K E + E+ EE+ E K +E KE EE+ EE EKE E+ R
Sbjct: 325 KSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERL 384
Query: 1026 IRRKR 1030
+ +
Sbjct: 385 KQLEE 389
Score = 45.5 bits (108), Expect = 1e-04
Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 11/220 (5%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGG 870
L + + +E K + +EEE ++ + EE EK E
Sbjct: 236 ALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEE 295
Query: 871 GGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
G ++ +E + K R + + +
Sbjct: 296 LEREIEELEEELEGLRALLEELEE------LLEKLKSLEERLEKLEEKLEKLESELEELA 349
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
+ + R + R + E+ E+ K+ ++ +E K++ + E+ +
Sbjct: 350 EEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQ 409
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
EE EE +K+ +E E+E EE +EE +K +I +
Sbjct: 410 EELEELEKELEELERELEELEEEIKK-----LEEQINQLE 444
Score = 44.8 bits (106), Expect = 3e-04
Identities = 36/212 (16%), Positives = 74/212 (34%)
Query: 816 RRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGR 875
+ KE KK + + ++ E +++ E EE E+ EE
Sbjct: 202 EDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEI 261
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
EEE ++ E + ++ R R
Sbjct: 262 ESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELL 321
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
+ + R + + + E EE ++K E K EE+ K+ + +E +K+ E+
Sbjct: 322 EKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKAL 381
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
++ K+ EE +E +++ E E+ + +
Sbjct: 382 ERLKQLEEAIQELKEELAELSAALEEIQEELE 413
Score = 42.1 bits (99), Expect = 0.002
Identities = 32/189 (16%), Positives = 75/189 (39%), Gaps = 7/189 (3%)
Query: 840 RRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGR 899
R R +KEE ++ ++ +E + +E E + + E E ++ E
Sbjct: 578 LRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAE----- 632
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
+ ++ + + RR +R + +E
Sbjct: 633 --EELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEEL 690
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E+ E++ E+ ++E EE KK G+ ++ ++ E + + ++ K+E ++ E+ E E+ E
Sbjct: 691 EQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELRE 750
Query: 1020 EKKRRRIRR 1028
+ + +R
Sbjct: 751 KLGKAGLRA 759
Score = 40.5 bits (95), Expect = 0.005
Identities = 31/209 (14%), Positives = 80/209 (38%), Gaps = 9/209 (4%)
Query: 822 RRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRR 881
+ +K E + + + + +EE ++ ++ +E E E R R
Sbjct: 532 EEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLE---------ELRLLR 582
Query: 882 RSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
+E EE +++ ++ + ++R + +
Sbjct: 583 TRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKL 642
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+ + + EE+ E+ + E ++E + + +E +K E+ ++ EEE ++ ++
Sbjct: 643 NLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLRE 702
Query: 1002 EEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E E+ ++ E E+ EE + R+ +
Sbjct: 703 ELEELLKKLGEIEQLIEELESRKAELEEL 731
Score = 35.5 bits (82), Expect = 0.20
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
EEE +++E+ + EE ++ E + ++ E++ E E ++ KEE +E+ EK E +E E
Sbjct: 487 EEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELE 546
Query: 1020 EKKRRRIRRK 1029
E K + ++
Sbjct: 547 ELKEKLQLQQ 556
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part of
a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 52.0 bits (125), Expect = 1e-06
Identities = 42/192 (21%), Positives = 84/192 (43%), Gaps = 1/192 (0%)
Query: 840 RRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGR 899
RR+ GK E+ + ++ + E +++++E G R++ GK +E + +E G
Sbjct: 315 RRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLL 374
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
+ ++ ++ + RR ++ RR+ KE
Sbjct: 375 SMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEA 434
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTK-KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E ++ KKE K + +E+K+ E + EE+ K E+ K K+ E+ ++EE++EE ++E
Sbjct: 435 ESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEEN 494
Query: 1019 EEKKRRRIRRKR 1030
K K
Sbjct: 495 PWLKTTSSVGKS 506
Score = 36.2 bits (84), Expect = 0.10
Identities = 46/220 (20%), Positives = 85/220 (38%), Gaps = 41/220 (18%)
Query: 820 RRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRR 879
+ +R KK + KK+ R KKE+ K++ K E EE + + E
Sbjct: 218 AKAKRIKKIKSKKY--------HRVHKKEKLKEELK-EFEELVKADPEA----------- 257
Query: 880 RRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR--- 936
EE +K E RRR ++R + + + + + + R + R+
Sbjct: 258 ------ALEELEKLE------RRRAEERMTLKHKNTSKWAKSMLKTGRAKYDEEARKALE 305
Query: 937 ---RRRRRRRRRRRRRRRRRRSGKE---EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
R+ RR+ + E EEE++ +E + E K K ++ +
Sbjct: 306 EQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGE 365
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
++EE + + E +K+EE E E+ RR + +
Sbjct: 366 DDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEE 405
Score = 35.4 bits (82), Expect = 0.19
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 30/116 (25%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK----------KKKEGKTK------ 984
R+ RR+ + +E+E+E+ EE+ ++++E +KK GK K
Sbjct: 309 RQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDE 368
Query: 985 --------------KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
+ KK+E + E ++ ++E E EEE +EE E+ ++ RR
Sbjct: 369 ENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRK 424
Score = 32.3 bits (74), Expect = 1.6
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 953 RRSGKEEEEEEKKKEEKKKE------EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
++ + KK++ KKK K K K++KKKE+ + +EE
Sbjct: 497 LKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDS 556
Query: 1007 EEEKKEEEEKEEEEKKRRRIRRK 1029
+ ++EE E++E+ ++K
Sbjct: 557 IKLDVDDEEDEDDEELPFLFKQK 579
Score = 32.3 bits (74), Expect = 1.6
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
+ RR R+ R EE K K KK K KK + K+EK KEE +E ++
Sbjct: 200 KARRAELRKMRELLF----REEAKAKRIKKI----KSKKYHRVHKKEKLKEELKEFEELV 251
Query: 1001 KEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K + E EE EK E + R+ K
Sbjct: 252 K---ADPEAALEELEKLERRRAEERMTLK 277
Score = 30.4 bits (69), Expect = 5.9
Identities = 16/70 (22%), Positives = 37/70 (52%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+S K+++ ++K + K + K K KK++KK++ + EE+ + +
Sbjct: 502 SVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDV 561
Query: 1011 KEEEEKEEEE 1020
+EE++++EE
Sbjct: 562 DDEEDEDDEE 571
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 51.7 bits (124), Expect = 1e-06
Identities = 19/72 (26%), Positives = 45/72 (62%), Gaps = 4/72 (5%)
Query: 955 SGKEEEEEEKKKEEK----KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
SG + +E K+ +K K+ E K + +++ E K +EE+ K+++ ++++KE+ ++
Sbjct: 363 SGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADE 422
Query: 1011 KEEEEKEEEEKK 1022
+E+ +++E KK
Sbjct: 423 DKEKRQKDERKK 434
Score = 49.0 bits (117), Expect = 8e-06
Identities = 20/68 (29%), Positives = 43/68 (63%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
++ +E K+ KK ++ KK E K + + ++ E + K++K K+EE E+++K++ +E +
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Query: 1018 EEEKKRRR 1025
E+ +K R
Sbjct: 425 EKRQKDER 432
Score = 40.5 bits (95), Expect = 0.004
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEK-KKEEEEKKKKEGKTKKEEKKKEEEEEK 996
++ + + EE E K KEEK K+EE EKK+KE + +EK++++E +K
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 39.4 bits (92), Expect = 0.010
Identities = 17/67 (25%), Positives = 35/67 (52%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EE + K++E K+ + +K E ++E ++ E K +EEK ++EE
Sbjct: 353 YEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEEN 412
Query: 1017 EEEEKKR 1023
E+++K++
Sbjct: 413 EKKQKEQ 419
Score = 39.0 bits (91), Expect = 0.013
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 964 KKKEEKKKEEE-EKKKKEGKTKKEEKKKEE---EEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
K EE K + K++ K+ KK ++ + + K + + +E E K +EE+ ++E
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 1020 EKKRRR 1025
E ++++
Sbjct: 411 ENEKKQ 416
Score = 38.6 bits (90), Expect = 0.014
Identities = 15/61 (24%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
++ K+E + ++ E K KEE+ K+E+ +++++E+ + KE+ +++E K
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEK---------LKQEENEKKQKEQADEDKEKRQKDERK 433
Query: 1011 K 1011
K
Sbjct: 434 K 434
Score = 30.9 bits (70), Expect = 4.2
Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 25/125 (20%)
Query: 748 ISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCI 807
I++ LD+ T +L + + K TDL L E K+L
Sbjct: 335 IARNLDDNDLTLLALTKLYEEV-----KSNTDLSGDKRQELLKEYNKKLQDY-------- 381
Query: 808 TQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE 867
++ + K+E + + + K+EE +KK+KE+ +E EK ++
Sbjct: 382 ------------TKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Query: 868 EGGGG 872
+
Sbjct: 430 DERKK 434
Score = 30.1 bits (68), Expect = 7.1
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGG 897
KK E K + + EE K +EE ++++ ++ +++E+++K E
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 51.8 bits (124), Expect = 2e-06
Identities = 24/82 (29%), Positives = 48/82 (58%)
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
RR+R+ R R+ R S + + +E ++++ + ++EE+++EEEEE++
Sbjct: 403 RRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQES 462
Query: 999 KKKEEEKEEEEKKEEEEKEEEE 1020
+++E E EEEE++ E + EE
Sbjct: 463 EEEEGEDEEEEEEVEADNGSEE 484
Score = 51.5 bits (123), Expect = 2e-06
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
RR+R+ R R+ R + S +E EE++ E+++EEEE++++E +
Sbjct: 403 RRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQES 462
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEE-----EEKEEEEKKR 1023
+EE+ ++EEEE++ + +EE E E EE EE+ ++R
Sbjct: 463 EEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERR 506
Score = 48.4 bits (115), Expect = 2e-05
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
RR+R+ R R+ R + S +E EEE+ EE+++EEEE++++E
Sbjct: 403 RRKRQERERQGTSSRSSDPSKASSTSGESPSMAS--QESEEEESVEEEEEEEEEEEEEEQ 460
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
++++EE + EEEEE+ + E+E E E + EE +
Sbjct: 461 ESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPE 500
Score = 43.7 bits (103), Expect = 4e-04
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSG-----------------KEEEEEEKKKEEKKKE 972
RR+R+ R R+ R + SG +EEEEEE+++EE+++
Sbjct: 403 RRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQES 462
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
EEE+ + E + ++ E EEE + + + EE +++ E + E R+
Sbjct: 463 EEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSE 518
Score = 40.7 bits (95), Expect = 0.004
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 15/74 (20%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK-----------KKEEEEEKKKKKKEEEKE 1006
+ EEEE++ K++E E++ ++ K +E EE++ ++EEE+E
Sbjct: 397 DTEEEERR----KRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEE 452
Query: 1007 EEEKKEEEEKEEEE 1020
EEE++EE+E EEEE
Sbjct: 453 EEEEEEEQESEEEE 466
Score = 40.3 bits (94), Expect = 0.005
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 957 KEEEEEEKKKEEKKKEEEEKK-----KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
EEEE +K++E++++ + K + + +E E+++ +EEE+EEEE++
Sbjct: 397 DTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEE 456
Query: 1012 EEEEKEEEE 1020
EEE++ EEE
Sbjct: 457 EEEQESEEE 465
Score = 39.1 bits (91), Expect = 0.014
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+++ EE+ E +K++E E++ ++ K E +E +EEE +EEEE+
Sbjct: 394 KQDDTEEE--ERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEE 451
Query: 1017 EEEEK 1021
EEEE+
Sbjct: 452 EEEEE 456
Score = 34.1 bits (78), Expect = 0.41
Identities = 23/140 (16%), Positives = 47/140 (33%), Gaps = 7/140 (5%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRR-------RRRRRRRRRRRRRRRRRRR 942
K+ RR+R+ ++R+ + R S + +
Sbjct: 394 KQDDTEEEERRKRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEE 453
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
+ G++EEEEE+ + + EEE + EG EE +++ E +
Sbjct: 454 EEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGI 513
Query: 1003 EEKEEEEKKEEEEKEEEEKK 1022
E ++ + E +
Sbjct: 514 SRMSEGQQPRGSSVQPESPQ 533
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 51.6 bits (124), Expect = 2e-06
Identities = 63/367 (17%), Positives = 119/367 (32%), Gaps = 43/367 (11%)
Query: 689 ELDIDGVYKYMLL--LKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKF 746
EL I K L+ LKK Y + + K + ++ EA
Sbjct: 1025 ELVITNAKKKDLVKELKKLGY--VRFKDIIKKKSEKITAEEEEG------AEEDDEADDE 1076
Query: 747 VISQILDEQSYTDYSLDDRLQNI-HEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKV 805
+ L DY L + ++ E ++K+ +L+ L L+ T E
Sbjct: 1077 DDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDK 1136
Query: 806 CITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKE 865
+ + + ++ + K K K R+ + KK+E+KKKK ++
Sbjct: 1137 FEEALEEQEEVEEKEIAKEQRLKSKTKGKASK--LRKPKLKKKEKKKKKSSADKSKKASV 1194
Query: 866 EEEGGGGGGRRRRRRRR-------------SGKEEEEKKKKEGGGGRRRRRRKKRRRSRR 912
+R+ +EE+K K + +R + +K
Sbjct: 1195 VGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSS 1254
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE 972
+ + + + +R + +R +G + KK+ KK+
Sbjct: 1255 EDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRL 1314
Query: 973 EEEKKKKEGKTKKE----EKKKEEEEEKK-------------KKKKEEEKEEEEKKEEEE 1015
E + K K E KKK + K+ +KKK + E++ E +
Sbjct: 1315 EGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVD 1374
Query: 1016 KEEEEKK 1022
E+E
Sbjct: 1375 DSEDEDD 1381
Score = 43.9 bits (104), Expect = 5e-04
Identities = 34/221 (15%), Positives = 82/221 (37%), Gaps = 16/221 (7%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKE----EEKKKKKEEEEEGGEKEE 866
+L + + ++ +++KK K K G +R E ++K K+ G ++E+
Sbjct: 1168 KLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQED 1227
Query: 867 EEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRR 926
+E ++ +R K+ K E K + + R +
Sbjct: 1228 DEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPP 1287
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE----EKKKEEEEKKKKEG- 981
+R + +++ ++R +++KK E KKK + K+
Sbjct: 1288 PSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASAS 1347
Query: 982 -------KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+ +K++ E++ + + E E++E E+++
Sbjct: 1348 QSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 35.8 bits (83), Expect = 0.16
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE EE++ +E++ K K +GK K K K +++EKKKKK +K ++ K
Sbjct: 1145 EEVEEKEIAKEQRL----KSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKR 1200
Query: 1018 EEEKKRRRIRRKR 1030
+ ++R++ K
Sbjct: 1201 VDSDEKRKLDDKP 1213
Score = 33.5 bits (77), Expect = 0.72
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+E EE+++ EEK+ +E++ K + K K + +K K KKKE++K++ + ++
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRK-----PKLKKKEKKKKKSSADKSKKA 1192
Query: 1017 EEEEKKRR 1024
+R
Sbjct: 1193 SVVGNSKR 1200
Score = 30.8 bits (70), Expect = 5.7
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKT-------------KKEEKKKEEEEEKKKKKKEEEKE 1006
E+ + E+K+KE E+ K K +++E+ +E+E K+++ K + K
Sbjct: 1105 EKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKG 1164
Query: 1007 EEEKKEEEEKEEEEKKRR 1024
+ K + + +++EKK++
Sbjct: 1165 KASKLRKPKLKKKEKKKK 1182
Score = 30.0 bits (68), Expect = 9.4
Identities = 14/74 (18%), Positives = 33/74 (44%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+ +E+ K + K K + +K K K +K++KK ++ KK K +
Sbjct: 1145 EEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSD 1204
Query: 1011 KEEEEKEEEEKKRR 1024
++ + ++ + K+
Sbjct: 1205 EKRKLDDKPDNKKS 1218
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 47.7 bits (114), Expect = 3e-06
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT 983
R RRR R + ++ +++R K+ ++EEK KK+ + +KKK++ K
Sbjct: 42 RALRRREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKT--AKKRAKRQKKKQKKKK 99
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
KK+ KK ++EEK+ K EE +EE++ EE+K+EE +
Sbjct: 100 KKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVE 138
Score = 46.6 bits (111), Expect = 7e-06
Identities = 38/101 (37%), Positives = 58/101 (57%), Gaps = 13/101 (12%)
Query: 938 RRRRRRRRRRRRRRRRRSGKEEEEEE--KKKEEKKKEEEEK---------KKKEGKTKKE 986
R RRR R + KE E+EE +K+EEKK+++EEK KKK+ K KK+
Sbjct: 42 RALRRREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKK 101
Query: 987 EKKKEEEEEKK--KKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+ KK ++E+K K EE +EEE+ EE+++EE + +
Sbjct: 102 KAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 39.3 bits (92), Expect = 0.002
Identities = 27/115 (23%), Positives = 57/115 (49%), Gaps = 17/115 (14%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
RRR +R + ++ +++R ++R+ + ++R +R
Sbjct: 45 RRREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKR-------------- 90
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+KK++KKK++++ KK K +KE K EE ++++ EE+K+EE + E+
Sbjct: 91 ---QKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 31.6 bits (72), Expect = 1.0
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 993 EEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E +K KKE E EE ++K EE+K ++E+K + R KR
Sbjct: 53 ELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKR 90
Score = 31.2 bits (71), Expect = 1.2
Identities = 16/41 (39%), Positives = 32/41 (78%), Gaps = 2/41 (4%)
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEEEK--KRRRIRRKR 1030
E ++K KK+ E++E ++K+EE+++++EEK K+R R+K+
Sbjct: 53 ELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKK 93
Score = 30.4 bits (69), Expect = 2.6
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 809 QIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEE 868
+ R + ++R +R+KK++KKK K++ KKEE++ K EE E+E EE
Sbjct: 75 KKRKDEEKTAKKRAKRQKKKQKKKKKKKAKK----GNKKEEKEGSKSSEESSDEEEEGEE 130
Query: 869 GG 870
Sbjct: 131 DK 132
Score = 30.0 bits (68), Expect = 2.6
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGG 872
+R +++K EEK KR +++++ KK+++ KK ++EE+ G K EE
Sbjct: 71 KREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDE 124
Score = 30.0 bits (68), Expect = 2.9
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGG 874
++R +K+K+E+K K+R R++++ KK+++KK KK ++E E +
Sbjct: 70 QKREEKKRKDEEKTAKKRAK-RQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDE 124
Score = 29.6 bits (67), Expect = 4.7
Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 23/121 (19%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
RRR R +E+ KK+ E +++R KKR+ + +R +R++++++++++++
Sbjct: 45 RRREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKK-- 102
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
K+ ++E+K+ K EE +++EG+ K+E+ E E
Sbjct: 103 ---------------------AKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIME 141
Query: 995 E 995
+
Sbjct: 142 K 142
Score = 29.2 bits (66), Expect = 4.8
Identities = 15/45 (33%), Positives = 36/45 (80%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E+ KKE E+E+ ++K+EE+K ++E+K +++ + +KK+++ ++K+
Sbjct: 57 EKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKK 101
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 50.8 bits (122), Expect = 4e-06
Identities = 49/242 (20%), Positives = 84/242 (34%), Gaps = 26/242 (10%)
Query: 789 LLEITKQLTKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKE 848
L E+ ++L + + + QI R R ++ EE R + K+
Sbjct: 707 LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE----------RIAQLSKEL 756
Query: 849 EEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRR 908
E + + EE EE E+ EEE E E + ++ + + K
Sbjct: 757 TELEAEIEELEERLEEAEEEL---------------AEAEAEIEELEAQIEQLKEELKAL 801
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE- 967
R R R R RR RR + E+ E E
Sbjct: 802 REALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI 861
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
E+ +E E+ + E + E+ EE + + EE EE ++ E ++ E ++ +R
Sbjct: 862 EELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELR 921
Query: 1028 RK 1029
K
Sbjct: 922 EK 923
Score = 47.0 bits (112), Expect = 6e-05
Identities = 36/210 (17%), Positives = 81/210 (38%), Gaps = 16/210 (7%)
Query: 808 TQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE 867
+SR + ++ R + +++ + K +E ++ E EE+ E +EE
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
Query: 868 EGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
E E ++ + R + + RS + + +
Sbjct: 353 --------------LESLEAELEELEAELEELESRLEELEEQLETLRS--KVAQLELQIA 396
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE 987
R R R RR R ++ ++ EE + +E + E EE +++ + ++E
Sbjct: 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
Query: 988 KKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
++ EE E+ +++ EE ++ + E E +
Sbjct: 457 ERLEEALEELREELEEAEQALDAAERELAQ 486
Score = 44.3 bits (105), Expect = 4e-04
Identities = 35/215 (16%), Positives = 77/215 (35%), Gaps = 5/215 (2%)
Query: 816 RRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGR 875
+ R R +++ ++ + + EE + +++ EE E E E
Sbjct: 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
S EE E++ E + + + R R R RR R ++
Sbjct: 365 AELEELESRLEELEEQL-ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK----KKE 991
++ + + EEE EE ++E ++ EE ++ +E + E+ ++E
Sbjct: 424 EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
+ + + E +E + E + K + +
Sbjct: 484 LAQLQARLDSLERLQENLEGFSEGVKALLKNQSGL 518
Score = 41.6 bits (98), Expect = 0.002
Identities = 22/92 (23%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK--EEEEEKKK 998
++++ R R EE E + ++ E K +E ++ E + K EE K+ E E + +
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361
Query: 999 KKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ + E +E E + EE E++ E + + + +
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLEL 393
Score = 41.6 bits (98), Expect = 0.003
Identities = 31/149 (20%), Positives = 54/149 (36%), Gaps = 5/149 (3%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
RRR ++ EE ++K + +K + R+ R+ R+
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
R + R + E E E ++ E++ EE E++ E E + EE E
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA-----EAEIEELEA 789
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+ ++ KEE K E +E E
Sbjct: 790 QIEQLKEELKALREALDELRAELTLLNEE 818
Score = 38.9 bits (91), Expect = 0.017
Identities = 37/209 (17%), Positives = 75/209 (35%), Gaps = 20/209 (9%)
Query: 822 RRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRR 881
R ++ K E ++ + R EE ++ +EE +E E+ EE +
Sbjct: 214 RYKELKAELRELELALLVLRLEE--LREELEELQEELKEAEEELEEL--------TAELQ 263
Query: 882 RSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
++ EE + + + + R ++++ R R R+
Sbjct: 264 ELEEKLEELRLEVS----ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319
Query: 942 RRRRRRRRRRRRRSGKEEEEE--EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
+ + EE E+K EE K+E E + + +E + + EE E + +
Sbjct: 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL----EELEAELEELESRLE 375
Query: 1000 KKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
+ EE+ E K + + + I R
Sbjct: 376 ELEEQLETLRSKVAQLELQIASLNNEIER 404
Score = 38.5 bits (90), Expect = 0.021
Identities = 39/229 (17%), Positives = 80/229 (34%), Gaps = 28/229 (12%)
Query: 811 RLSRNRRGRRRRRRKKKEEK--------KKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGG 862
L R R + K E + + + + + +E +++ +E E
Sbjct: 204 SLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQ 263
Query: 863 EKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRR 922
E EE+ R +EE E+ +KE R ++++ + R
Sbjct: 264 ELEEKL------EELRLEVSELEEEIEELQKELYALANEISRLEQQK--------QILRE 309
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE--EEEKKKKE 980
R R+ + + ++ EE +++ E + E E E + +E
Sbjct: 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE----EEEKEEEEKKRRR 1025
+++ EE +++ E + K + E + E E E E +R R
Sbjct: 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418
Score = 36.6 bits (85), Expect = 0.085
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 905 KKRRRSRRRRSRRRR---------RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
K+RR+ R+ R R R+ + R+ + R + + R
Sbjct: 171 KERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALL 230
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE-EEKKKKKKEEEKEEEEKKEE- 1013
EE ++ EE ++E +E +++ + E ++ EE+ EE + + E E+E EE ++E
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
Query: 1014 ----EEKEEEEKKRRRIRRKR 1030
E E++++ +R +
Sbjct: 291 YALANEISRLEQQKQILRERL 311
Score = 34.6 bits (80), Expect = 0.30
Identities = 28/185 (15%), Positives = 60/185 (32%), Gaps = 7/185 (3%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
K+ EE ++ + + E E + R + KE E + + R +
Sbjct: 719 KELEELSRQISALRKDLARLEAEVE----QLEERIAQLSKELTELEAEIEELEERLEEAE 774
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
+ + + + + R R R E E
Sbjct: 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA 834
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
E++ E+ E++ +E E+ + E ++ ++ EE E E + E+ E+
Sbjct: 835 ATERRLEDLEEQIEE---LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL 891
Query: 1026 IRRKR 1030
+R +
Sbjct: 892 LRSEL 896
Score = 31.6 bits (72), Expect = 2.7
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
RRR K EE EEK E +K E +K+ E ++ E+ ++E EE ++ K+
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734
Query: 1007 EEEKKEEEEKEEEEKKRRRIRRKR 1030
+ E E+ EE +
Sbjct: 735 LARLEAEVEQLEERIAQLSKELTE 758
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA;
Provisional.
Length = 387
Score = 49.8 bits (119), Expect = 4e-06
Identities = 26/137 (18%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
R++++++S +R +R+++ +++ ++++ + R ++ + R + ++ EE +
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Query: 963 EKKKEEKKKEEEEKKKKE----------------GKTKKEEKKKEEEEEKKKKKKEEEKE 1006
+ ++K+ EE K K E KK+ E E KK E K+
Sbjct: 126 QAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKK 185
Query: 1007 EEEKKEEEEKEEEEKKR 1023
+ E + + E KK+
Sbjct: 186 KAEAEAAAKAAAEAKKK 202
Score = 49.8 bits (119), Expect = 5e-06
Identities = 37/183 (20%), Positives = 78/183 (42%), Gaps = 21/183 (11%)
Query: 863 EKEEEEGGGGGGR-----------------RRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
E E GGGGGG R++++++S K EE++KK+ ++K
Sbjct: 36 ENIEASGGGGGGSVIDAVMVDPGAVVEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQK 95
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
+ R + + R + ++++ ++ ++++ + + + E E K+
Sbjct: 96 QAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
Query: 966 KEE-KKKEEEEKKKK---EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
KK E KKK E K + K++ E + K E +++ + E ++K E
Sbjct: 156 AAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEA 215
Query: 1022 KRR 1024
K++
Sbjct: 216 KKK 218
Score = 47.9 bits (114), Expect = 2e-05
Identities = 36/175 (20%), Positives = 74/175 (42%), Gaps = 10/175 (5%)
Query: 859 EEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRR 918
E+ +++++ +R+++ + EE ++K+ R ++ K+R ++ ++ +
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE-----KKKEE 973
++ ++++ + + + +R + ++ E KK+ KK
Sbjct: 122 EAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAA 181
Query: 974 EEKKKKE----GKTKKEEKKKEEEEEKKKKKKE-EEKEEEEKKEEEEKEEEEKKR 1023
E KKK E K E KKK E E KKK E ++K E K K E K
Sbjct: 182 EAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKA 236
Score = 43.3 bits (102), Expect = 5e-04
Identities = 34/199 (17%), Positives = 82/199 (41%), Gaps = 7/199 (3%)
Query: 831 KKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEK 890
+++ R+ ++ + +E+ KKK++++ EE +K+ E R ++ + +E+K
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQE----RLKQLEKERLAAQEQK 117
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
K+ E + ++K+ + + + + + +R ++ +++ +
Sbjct: 118 KQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAK 177
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+ K++ E E K E KKK E + KK+ + +++ + K K E
Sbjct: 178 KAAAEAKKKAEAEAAA---KAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEA 234
Query: 1011 KEEEEKEEEEKKRRRIRRK 1029
K EK K +
Sbjct: 235 KAAAEKAAAAKAAEKAAAA 253
Score = 36.7 bits (85), Expect = 0.059
Identities = 30/191 (15%), Positives = 72/191 (37%), Gaps = 10/191 (5%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR 878
R +RKKKE+++ + + + K+ EK++ +E++ K+ EE +
Sbjct: 76 RAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQK---KQAEE-------AAK 125
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
+ K+ EE K + + + +R + + +++ ++ ++
Sbjct: 126 QAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKK 185
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
+ + ++ + E +++ E KKK E K K E K E+ K
Sbjct: 186 KAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAK 245
Query: 999 KKKEEEKEEEE 1009
++ +
Sbjct: 246 AAEKAAAAKAA 256
Score = 34.0 bits (78), Expect = 0.41
Identities = 12/64 (18%), Positives = 40/64 (62%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
E+ ++++++K + ++ +KK++++ E+ ++K+ E+E ++ E+E +E+K++
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAE 121
Query: 1027 RRKR 1030
+
Sbjct: 122 EAAK 125
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 49.2 bits (118), Expect = 5e-06
Identities = 21/65 (32%), Positives = 45/65 (69%), Gaps = 2/65 (3%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE--EEKKKKKKEEEKE 1006
R+ ++ +EEEE+ K E++++EE ++KKE K K+E + K + E+++K +E+E++
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Query: 1007 EEEKK 1011
++ +K
Sbjct: 318 KQARK 322
Score = 44.9 bits (107), Expect = 1e-04
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
R+ + R + + ++EE +EKK+E+KK+E E K K + +E++K EE+E
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKL--SPEEQRKLEEKE 315
Query: 995 EKKKKKK 1001
KK+ +K
Sbjct: 316 RKKQARK 322
Score = 43.0 bits (102), Expect = 5e-04
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 2/49 (4%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEE--EKKEEEEKEEEEKKRRRIRRKR 1030
+K +K +EEEEEK K EEE++EE EKKEE++KEE E K ++ +
Sbjct: 259 RKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
Score = 38.8 bits (91), Expect = 0.011
Identities = 12/75 (16%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
+ R+ + R + + R+ + ++ +++ R + K EE
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLA------KLSPEE 307
Query: 963 EKKKEEKKKEEEEKK 977
++K EEK+++++ +K
Sbjct: 308 QRKLEEKERKKQARK 322
Score = 31.1 bits (71), Expect = 2.7
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 15/88 (17%)
Query: 807 ITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEE 866
+ ++LS + + R++ EE+K K R+ +K+EEKKK++ E + E
Sbjct: 248 LANLKLSPEVLRKVDKTREE-EEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPE 306
Query: 867 EEGGGGGGRRRRRRRRSGKEEEEKKKKE 894
E+ R+ EE+E+KK+
Sbjct: 307 EQ------RK--------LEEKERKKQA 320
Score = 29.5 bits (67), Expect = 9.1
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK----EEKKKEEEEKK 977
R+ + R + + R+ + ++ KEE E + K E++K EE+E+K
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Query: 978 KKEGK 982
K+ K
Sbjct: 318 KQARK 322
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit of
transcription factor IIF (TFIIF), which is essential for
accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 50.0 bits (119), Expect = 5e-06
Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 2/172 (1%)
Query: 851 KKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRS 910
K +E E E E+GGGG G+ + + G +E++ + + GG + K+++
Sbjct: 187 KNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKK 246
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR--RRRRRRSGKEEEEEEKKKEE 968
+ +++++ ++ +R R SG + EE E K
Sbjct: 247 KLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSP 306
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+ + E ++ E + EE+K EEE KK K+ +K + +K ++ + +
Sbjct: 307 EIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDS 358
Score = 47.6 bits (113), Expect = 3e-05
Identities = 27/147 (18%), Positives = 64/147 (43%), Gaps = 7/147 (4%)
Query: 884 GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
G E+EE + ++GGGGR + + K + + ++++++ + ++
Sbjct: 194 GDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKK 253
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEE-----EKKKKEGKTKKEEKKKEEEEEKK- 997
+ ++ +R + +E + + + EE ++E+K E K
Sbjct: 254 KLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPE 313
Query: 998 -KKKKEEEKEEEEKKEEEEKEEEEKKR 1023
++ ++ E+ EEEK EEE ++ K+
Sbjct: 314 IEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 34.6 bits (79), Expect = 0.27
Identities = 38/193 (19%), Positives = 76/193 (39%), Gaps = 22/193 (11%)
Query: 829 EKKKWKRRGGGRRR--RRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKE 886
E+ + ++ GGGR + + E + + +E ++GGE +EE +
Sbjct: 198 EETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEE-----------------K 240
Query: 887 EEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
++KKKK ++ KK +R + R R
Sbjct: 241 SKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEER 300
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
+ K E E+++ EE EEEK ++EG K+ KK ++ + KK +++ +
Sbjct: 301 EDKLSPEIPAKPEIEQDEDSEES---EEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSD 357
Query: 1007 EEEKKEEEEKEEE 1019
+ ++ + + E
Sbjct: 358 SGDDSDDSDIDGE 370
Score = 31.9 bits (72), Expect = 1.8
Identities = 16/93 (17%), Positives = 43/93 (46%)
Query: 938 RRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK 997
RR++ + + ++ +E + ++ + K+ K K E E++ ++
Sbjct: 170 RRKKTANGFQLMMMKAAKNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDES 229
Query: 998 KKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K E+ EE+ KK++++ + +KK ++ +
Sbjct: 230 DKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGK 262
Score = 31.9 bits (72), Expect = 2.0
Identities = 19/94 (20%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK----EE 987
RR++ + + + G E+EE E +K + ++ K K + E
Sbjct: 170 RRKKTANGFQLMMMKAAKNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDES 229
Query: 988 KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
K E+ +++K KK+++K + KK+ ++ ++ ++
Sbjct: 230 DKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKR 263
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this family
are typically between 146 and 237 amino acids in length.
There are two conserved sequence motifs: QYGP and PKLY.
Length = 155
Score = 47.1 bits (112), Expect = 5e-06
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
R ++EEE+ +EE E E++ E KT+ +EKKK E K K E+EK + E K+
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKK---REVPKPKTEKEKPKTEPKK 145
Query: 1013 E 1013
Sbjct: 146 P 146
Score = 46.3 bits (110), Expect = 1e-05
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
+E E++ E K E +EKKK+E K EK+K + E KK K
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 43.6 bits (103), Expect = 1e-04
Identities = 14/58 (24%), Positives = 36/58 (62%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
E ++E+++ E ++ E ++++ E K + K+++++E + K E+EK + E K+ +
Sbjct: 90 ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 37.0 bits (86), Expect = 0.015
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ EE++ EEE + ++++ + + E KE++++E + K + + K
Sbjct: 93 SSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKT 141
Score = 31.3 bits (71), Expect = 1.2
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
K +E ++EEE+ +++ +E E+E+ E + + +E+KKR
Sbjct: 86 KIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKR 127
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 49.7 bits (119), Expect = 6e-06
Identities = 18/106 (16%), Positives = 48/106 (45%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
++R+R + R + ++ + E ++++E ++E EE +++
Sbjct: 23 VLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQRE 82
Query: 980 EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
E + ++E++ + EK + + +E E+ E E EE +++
Sbjct: 83 EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQL 128
Score = 48.9 bits (117), Expect = 1e-05
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 6/123 (4%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
G +K++R ++ + ++ + + R R ++R+ RR R
Sbjct: 18 LGVLVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRER- 76
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
EE +++EE+ ++EE+ + + + EE EK +E E EE EK+ + E
Sbjct: 77 -----EELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNE 131
Query: 1016 KEE 1018
Sbjct: 132 LYR 134
Score = 47.8 bits (114), Expect = 2e-05
Identities = 21/112 (18%), Positives = 50/112 (44%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
+R+R + R + ++ + + R R+ + +E +++E +++
Sbjct: 23 VLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQRE 82
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
EE +K+E + EK E + ++++K E E +E E++ + E R
Sbjct: 83 EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYR 134
Score = 43.2 bits (102), Expect = 7e-04
Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 8/165 (4%)
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
G ++R+R + + E ++ + + + R R ++R+ RR R
Sbjct: 18 LGVLVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRERE 77
Query: 929 RRRRRRRRRRRRRRRRRRR-------RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
+R R ++ + R + R E + +E +K+ + E + G
Sbjct: 78 ELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAG 137
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
T E+ +K + + +EE+ + +K EEE E E+K + I
Sbjct: 138 LT-PEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNI 181
Score = 40.8 bits (96), Expect = 0.004
Identities = 16/105 (15%), Positives = 49/105 (46%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK 985
++R+R + R + ++ + + E +E +E ++ +E ++++E ++
Sbjct: 23 VLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQRE 82
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
EE+ ++EE+ + ++ + E + +E E+ + K+
Sbjct: 83 EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQ 127
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 49.2 bits (117), Expect = 8e-06
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
K R S+ R ++ + +++ + +++ + ++R R+ +E + K
Sbjct: 204 KERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP 263
Query: 966 -----KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK---KEEEEKE 1017
+E K+ E +K++ K + E KK +EE K K K + ++E K KE E+KE
Sbjct: 264 ADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKE 323
Query: 1018 EEEKKRR 1024
E +K+R
Sbjct: 324 LEAQKKR 330
Score = 46.5 bits (110), Expect = 6e-05
Identities = 29/132 (21%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
K++E +R ++ K +++ + +++ + ++R R++++ + +
Sbjct: 204 KERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKP 263
Query: 951 RRRRSGKEEEE--EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
S KE+++ E +K+E +K + E KK E K ++ K + K++ K EKE E
Sbjct: 264 ADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKA---FDLKQESKASEKEAE 320
Query: 1009 EKKEEEEKEEEE 1020
+K+ E +K+ E
Sbjct: 321 DKELEAQKKREP 332
Score = 40.4 bits (94), Expect = 0.005
Identities = 10/70 (14%), Positives = 39/70 (55%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+E +E+ K+ ++ K+E ++K+ K +++ ++ +K++ + ++++E + +
Sbjct: 206 RESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPAD 265
Query: 1017 EEEEKKRRRI 1026
K+ +++
Sbjct: 266 TSSPKEDKQV 275
Score = 38.4 bits (89), Expect = 0.021
Identities = 14/99 (14%), Positives = 53/99 (53%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
+R ++ + +++ + +++ ++ ++++ E ++K++E K + K+
Sbjct: 213 KRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKED 272
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
++ E +K++ E+ + E +K +EE + ++ K ++++
Sbjct: 273 KQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQE 311
Score = 30.0 bits (67), Expect = 7.1
Identities = 24/156 (15%), Positives = 59/156 (37%), Gaps = 15/156 (9%)
Query: 839 GRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGG 898
+R + KEE KK+ + ++ + + + R R+ K++E K +
Sbjct: 211 DAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQ----KQQEAKNLPKPA-- 264
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
S + ++ ++R + + ++ + + + ++ S
Sbjct: 265 ---------DTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKAS 315
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
E+E E K+ E +K+ E + KTK + + +
Sbjct: 316 EKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSL 351
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus spores
are protected by a protein shell consisting of over 50
different polypeptides, known as the coat. This family of
proteins has an important morphogenetic role in coat
assembly, it is involved in the assembly of at least 5
different coat proteins including CotB, CotG, CotS, CotSA
and CotW. It is likely to act at a late stage of coat
assembly.
Length = 185
Score = 47.1 bits (112), Expect = 1e-05
Identities = 23/82 (28%), Positives = 49/82 (59%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
++ +EE+E + + K+EE++ + +E + +KE + E E+ ++++KEE +EE
Sbjct: 32 IIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEE 91
Query: 1009 EKKEEEEKEEEEKKRRRIRRKR 1030
EK+EE E ++++ R+K
Sbjct: 92 EKEEEAEDVKQQEVFSFKRKKP 113
Score = 39.4 bits (92), Expect = 0.003
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE------EKKKKKKEE 1003
++ KEEE+E + K KEEE+K + E K++E + E E EK++ +EE
Sbjct: 32 IIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEE 91
Query: 1004 EKEEEEKKEEEEKEEEEKKRRRIRR 1028
EKEEE + ++++ K+++ +
Sbjct: 92 EKEEEAEDVKQQEVFSFKRKKPFKE 116
Score = 35.6 bits (82), Expect = 0.058
Identities = 17/78 (21%), Positives = 44/78 (56%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
++ + + + +EE++K E ++ E+EK+ E + + +++E+EE +++
Sbjct: 32 IIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEE 91
Query: 1000 KKEEEKEEEEKKEEEEKE 1017
+KEEE E+ +++E +
Sbjct: 92 EKEEEAEDVKQQEVFSFK 109
Score = 33.7 bits (77), Expect = 0.28
Identities = 15/78 (19%), Positives = 45/78 (57%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
++ + + +S +EE++ E ++ EK+KE E ++++ ++E+++ +EE
Sbjct: 32 IIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEE 91
Query: 995 EKKKKKKEEEKEEEEKKE 1012
EK+++ ++ +++E +
Sbjct: 92 EKEEEAEDVKQQEVFSFK 109
Score = 30.6 bits (69), Expect = 3.3
Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 820 RRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRR 879
++ +KEE+K+ KEEE+K + EE E+ E E E ++ +
Sbjct: 32 IIKKADEKEEEKE------NSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKE 85
Query: 880 RRRSGKEEEEKKKKEGGGGRRRRRRKKR 907
+E+EE+ + +RKK
Sbjct: 86 EIAQEEEKEEEAEDVKQQEVFSFKRKKP 113
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and 214
amino acids in length.
Length = 125
Score = 45.7 bits (109), Expect = 1e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E EEE+ +++ + K+K + + K+EEKK E E+ K +E+ + E EK E+E +E
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 1018 EEEKKRRRIRRK 1029
E + RR +
Sbjct: 61 LEAELARRELKA 72
Score = 43.4 bits (103), Expect = 5e-05
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E ++E+ ++E K + K EKK+EE++ + +K + EE+ + E E+ E+E ++
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 1023 RRRIRRKR 1030
+R
Sbjct: 61 LEAELARR 68
Score = 41.5 bits (98), Expect = 3e-04
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
++E K K+K + EKK++E K++ E+ K EEK + E ++ E++ EE E E
Sbjct: 10 DKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEY---ELEKLEKELEELEAELA 66
Query: 1020 EKKRRRIRRK 1029
++ + +K
Sbjct: 67 RRELKAEAKK 76
Score = 38.8 bits (91), Expect = 0.002
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKK--KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+ KE+ + EKK+EEKK E E+ K E K + E +K E+E E+ + + + + E
Sbjct: 15 KAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEA 74
Query: 1011 KE 1012
K+
Sbjct: 75 KK 76
Score = 32.2 bits (74), Expect = 0.49
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+ + +++ K E E+ K ++K E E +K E + ++ E + E K + KK
Sbjct: 20 EKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKK 76
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 48.8 bits (116), Expect = 1e-05
Identities = 25/135 (18%), Positives = 38/135 (28%), Gaps = 12/135 (8%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR------------RRRR 945
R+RR+ KR R R S R +R R + RRR R + R
Sbjct: 1 MSRQRRKAKRSRHTLRSSCRGHCKRHGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRA 60
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
+ R+ E EE + EK++ + G ++
Sbjct: 61 VAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSP 120
Query: 1006 EEEEKKEEEEKEEEE 1020
E E
Sbjct: 121 ENTSGSSPESPASHS 135
Score = 38.8 bits (90), Expect = 0.013
Identities = 19/150 (12%), Positives = 34/150 (22%), Gaps = 4/150 (2%)
Query: 875 RRRRRRRRSGKEEEEKKK-KEGGGGRRRRRRKKRRRSRRRRSRRR---RRRRRRRRRRRR 930
RR+ +R R + K GG R + R++ +R + + R +
Sbjct: 5 RRKAKRSRHTLRSSCRGHCKRHGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVAEQ 64
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
R+ R + R G + ++ E
Sbjct: 65 GHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTS 124
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E E E
Sbjct: 125 GSSPESPASHSPPPSPPSHPGPHEPAPPES 154
Score = 35.3 bits (81), Expect = 0.15
Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 8/94 (8%)
Query: 814 RNRRGRRRRRRKKKEEKKKWKRRGGGR---RRRRGKKEEEKKKKKEEEEEGGEK-----E 865
+ R+ +R R + + KR GG R RRRG K G + E
Sbjct: 4 QRRKAKRSRHTLRSSCRGHCKRHGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVAE 63
Query: 866 EEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGR 899
+ R G++EE + G G
Sbjct: 64 QGHRQTESDTETAEESRHGEKEERGQGGPSGSGS 97
Score = 33.0 bits (75), Expect = 0.83
Identities = 12/79 (15%), Positives = 26/79 (32%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
R+RR+ +RS + ++ E+ + T K +
Sbjct: 3 RQRRKAKRSRHTLRSSCRGHCKRHGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVA 62
Query: 1007 EEEKKEEEEKEEEEKKRRR 1025
E+ ++ E E ++ R
Sbjct: 63 EQGHRQTESDTETAEESRH 81
Score = 32.6 bits (74), Expect = 1.0
Identities = 20/96 (20%), Positives = 26/96 (27%), Gaps = 5/96 (5%)
Query: 806 CITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRR---GKKEEEKKKKKEEEEEGG 862
R RR R K G + R G ++ E + EE G
Sbjct: 25 RHGGTREQAGRRRGTAARAAKP--APPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHG 82
Query: 863 EKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGG 898
EKEE GG G ++ G
Sbjct: 83 EKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGL 118
Score = 31.9 bits (72), Expect = 1.7
Identities = 12/85 (14%), Positives = 32/85 (37%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
R+RR+ +R R + + K+ +E+ +++ + + +
Sbjct: 3 RQRRKAKRSRHTLRSSCRGHCKRHGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVA 62
Query: 1004 EKEEEEKKEEEEKEEEEKKRRRIRR 1028
E+ + + + E EE + + R
Sbjct: 63 EQGHRQTESDTETAEESRHGEKEER 87
Score = 30.3 bits (68), Expect = 5.2
Identities = 9/65 (13%), Positives = 17/65 (26%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E E + E E + + ++ ++ E + E E
Sbjct: 180 PPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTE 239
Query: 1016 KEEEE 1020
E E
Sbjct: 240 PEREG 244
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 49.3 bits (118), Expect = 1e-05
Identities = 47/210 (22%), Positives = 82/210 (39%), Gaps = 12/210 (5%)
Query: 816 RRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGR 875
R R RR+ EE +R +R R EE +++ E E E EK E
Sbjct: 510 RIERLEERREDLEELIAERRETIEEKRER--AEELRERAAELEAEAEEKREAA------- 560
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
+ + EE + + R + R R + R R +R
Sbjct: 561 -AEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALA 619
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEE--EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
RR R +R R+R E +E E+ +E+K++ EE ++ E K + +++++
Sbjct: 620 ELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDL 679
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
+ + + E +E EE +E E E +
Sbjct: 680 QAEIGAVENELEELEELRERREALENRVEA 709
Score = 36.6 bits (85), Expect = 0.073
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R R RR RR +R R R R + E E EEK++ + EEE +
Sbjct: 509 DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAE 568
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKK-----------EEEKEEEEKKEEEEKEEEEKKRRR 1025
+ +E + K E +E + ++ E+E E +K E E +++R R
Sbjct: 569 EAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRER 628
Query: 1026 IRRKR 1030
+ KR
Sbjct: 629 LAEKR 633
Score = 33.9 bits (78), Expect = 0.54
Identities = 49/220 (22%), Positives = 80/220 (36%), Gaps = 13/220 (5%)
Query: 811 RLSRNRRGRRRRRRKKKEEK--KKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEE 868
R+ ++RG + + + EEK K R G + +EE ++ +E+ E+ E +E
Sbjct: 180 RVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEA 239
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
RR E E + +E R R + R R R R
Sbjct: 240 DEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLL 299
Query: 929 RR-----------RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
RR R R R R + EE E +E+ EE +
Sbjct: 300 AEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAE 359
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+ + + E + EE E + ++EE +E EE+ EE +
Sbjct: 360 ELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399
Score = 33.9 bits (78), Expect = 0.61
Identities = 31/155 (20%), Positives = 48/155 (30%), Gaps = 8/155 (5%)
Query: 884 GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
G+ E E R R + R R R R R
Sbjct: 458 GQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEER 517
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
R R EE+ E+ +E +++ E + + E K + + +EE EE +++ E
Sbjct: 518 REDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAEL 577
Query: 1004 EKEEEEKKEEEEK--------EEEEKKRRRIRRKR 1030
+ E KE E I R R
Sbjct: 578 NSKLAELKERIESLERIRTLLAAIADAEDEIERLR 612
Score = 32.3 bits (74), Expect = 1.5
Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 15/202 (7%)
Query: 840 RRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGR 899
R EE+ ++ EE E E EE RR +E EE +++ G
Sbjct: 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPV 405
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
+ R R R R R R R + G+
Sbjct: 406 DLGNAEDFLEELREE----RDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPV 461
Query: 960 EEE------EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE- 1012
E E+ +E ++ E E + E + ++ E++ E E+ + + E+ EE +++
Sbjct: 462 EGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDL 521
Query: 1013 ----EEEKEEEEKKRRRIRRKR 1030
E +E E+KR R R
Sbjct: 522 EELIAERRETIEEKRERAEELR 543
Score = 32.3 bits (74), Expect = 1.7
Identities = 24/111 (21%), Positives = 41/111 (36%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
R R R R R R + E E +++ E + EE + +
Sbjct: 272 REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE 331
Query: 980 EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E + + +E E ++ EE+ EE ++E E E E ++ R R
Sbjct: 332 ECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDR 382
Score = 31.9 bits (73), Expect = 2.3
Identities = 47/217 (21%), Positives = 79/217 (36%), Gaps = 28/217 (12%)
Query: 814 RNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
R ++ E+ + + R RR EE +++E EE E+ EE
Sbjct: 488 EEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEE------ 541
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
R R + E E ++K+E + R S+ + R R R
Sbjct: 542 ----LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTL 597
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
R R +R + +E E+ E K E+K+E E
Sbjct: 598 LAAIADAEDEIERLREKREALAELNDERRERLAE-----------------KRERKRELE 640
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E + + EE +E++E+ EE E+ E+K +R +R
Sbjct: 641 AEFDEARIEEAREDKERAEEYL-EQVEEKLDELREER 676
Score = 31.2 bits (71), Expect = 4.1
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 19/118 (16%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE----------EEEEKKKEEKKKEEE 974
R R R R R R +G ++ EE E + EE + E
Sbjct: 272 REREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE 331
Query: 975 EKK------KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
E + +E ++ +E+ EE ++ + EE E E + EE +E E +R I
Sbjct: 332 ECRVAAQAHNEEAESLREDADDLEERAEELR---EEAAELESELEEAREAVEDRREEI 386
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 48.2 bits (115), Expect = 1e-05
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 900 RRRRRKKRR--RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R + RK +R + +R+ +RR+R R+ R R + R + RR R
Sbjct: 248 RCKNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRNEPR 303
Score = 47.5 bits (113), Expect = 2e-05
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
++ R + R+++R + R+ +RR+R R+ R R + R + +
Sbjct: 241 ANQRMIERCKNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRN 300
Query: 962 EEK 964
E +
Sbjct: 301 EPR 303
Score = 43.6 bits (103), Expect = 4e-04
Identities = 14/64 (21%), Positives = 22/64 (34%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
+K K G + RK + R+R + R R + R + RR R R +
Sbjct: 252 RKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRNEPRARMLMGDK 311
Query: 950 RRRR 953
Sbjct: 312 HWHN 315
Score = 43.6 bits (103), Expect = 4e-04
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK 969
R + R+ +R + R+ +RR+R R+ R R + + + E + ++ E +
Sbjct: 248 RCKNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRNEPR 303
Score = 40.9 bits (96), Expect = 0.002
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 9/82 (10%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
+ R+ +R G R+ KRR+ R+ R + R + RR
Sbjct: 250 KNRKAKRDPN---------GTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRN 300
Query: 936 RRRRRRRRRRRRRRRRRRRSGK 957
R R + +
Sbjct: 301 EPRARMLMGDKHWHNAWLHNNN 322
Score = 39.4 bits (92), Expect = 0.007
Identities = 11/56 (19%), Positives = 25/56 (44%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE 972
+ R+ +R + R+ +RR+R R+ R R + + E + ++ E +
Sbjct: 250 KNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRNEPRAR 305
Score = 37.5 bits (87), Expect = 0.035
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEE 973
R + R+ +R + R+ +RR+R R+ R R + + + + ++ E
Sbjct: 248 RCKNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRNEP 302
Score = 37.1 bits (86), Expect = 0.043
Identities = 11/65 (16%), Positives = 26/65 (40%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
+R R + R+ +R + R+ +RR+R R+ + +E + E +
Sbjct: 241 ANQRMIERCKNRKAKRDPNGTFQVARKAAMKRRKRNRKLRARNAKELAAMRMEANQIRRN 300
Query: 976 KKKKE 980
+ +
Sbjct: 301 EPRAR 305
Score = 33.6 bits (77), Expect = 0.56
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 864 KEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRR 923
K + + G R+ + RR+R RK R R+ + + R +
Sbjct: 253 KAKRDPNGTFQVARKAAMK----------------RRKRNRKLRARNAKELAAMRMEANQ 296
Query: 924 RRRRRRRRRRRRRRRRRRR 942
RR R R +
Sbjct: 297 IRRNEPRARMLMGDKHWHN 315
Score = 31.3 bits (71), Expect = 2.6
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 10/65 (15%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
+R R + R+ +R + R+ +RR+R R K + +E
Sbjct: 241 ANQRMIERCKNRKAKRDPNGTFQVARKAAMKRRKRNR----------KLRARNAKELAAM 290
Query: 978 KKEGK 982
+ E
Sbjct: 291 RMEAN 295
>gnl|CDD|226082 COG3552, CoxE, Protein containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 395
Score = 48.2 bits (115), Expect = 1e-05
Identities = 35/135 (25%), Positives = 47/135 (34%), Gaps = 12/135 (8%)
Query: 831 KKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEG---GGGGGRRRRRRRRSGKEE 887
+ + R R G+ E + + E G E G R SG E
Sbjct: 86 EAMRALILPGRARAGEDERRAMENRVSEALGTRSEAALTPMEASEGEPVAARLTPSGDEA 145
Query: 888 EEKKK-KEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR---- 942
+ + R + RR R +RRR RR R RRR+R RR R+
Sbjct: 146 LADRDFAQLDTAELRALGEALRRLRAPLARRRSRRLRASRRRKRIDLRRTMRKSMSTGGE 205
Query: 943 ----RRRRRRRRRRR 953
RRR RRR+
Sbjct: 206 VILLVRRRPRRRKPP 220
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 48.2 bits (115), Expect = 2e-05
Identities = 20/75 (26%), Positives = 43/75 (57%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+ E E K K++ + ++ KE + K+ E++ +EE++ KKK + + +E KE +
Sbjct: 262 FESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQ 321
Query: 1016 KEEEEKKRRRIRRKR 1030
KE+ +++ R++R
Sbjct: 322 KEKARARKKEQRKER 336
Score = 47.8 bits (114), Expect = 2e-05
Identities = 20/112 (17%), Positives = 51/112 (45%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
+ ++R+ R ++ + R ++ EEE E + E +
Sbjct: 207 VKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEY 266
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+ K + ++K + + K+K++KE E+E +E+K+ ++K + + + I ++
Sbjct: 267 EPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKE 318
Score = 43.2 bits (102), Expect = 6e-04
Identities = 19/76 (25%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKK-KEGKTKKEEKKKEEEEEKKKK-KKEEEKEEEEKKEEE 1014
K + K K ++ KE+ K+ +E K +K+ KKK + + K+ KE ++E+ + ++
Sbjct: 271 KPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKK 330
Query: 1015 EKEEEEKKRRRIRRKR 1030
E+ +E ++++++R++
Sbjct: 331 EQRKERGEKKKLKRRK 346
Score = 42.8 bits (101), Expect = 7e-04
Identities = 18/72 (25%), Positives = 44/72 (61%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
R +R+ + +R + +R + E E +++K+ KKK + + KE + +K+K +K+++
Sbjct: 274 RPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQR 333
Query: 1000 KKEEEKEEEEKK 1011
K+ EK++ +++
Sbjct: 334 KERGEKKKLKRR 345
Score = 42.8 bits (101), Expect = 8e-04
Identities = 28/174 (16%), Positives = 67/174 (38%), Gaps = 31/174 (17%)
Query: 827 KEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKE 886
++E K K+R ++ E ++KK E+ +E G +
Sbjct: 204 EKEVKAEKKR---------QELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESD 254
Query: 887 EEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
+E + + R +R+ + +R + +RR+
Sbjct: 255 DESAWEGFESEYEPINKPV----------------------RPKRKTKAQRNKEKRRKEL 292
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
R + + K++ + + +E KE +K+K + K++ K++ E+++ K++K
Sbjct: 293 EREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRK 346
Score = 40.8 bits (96), Expect = 0.003
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
++E + EKK++E ++ EE+K +K + E ++ EE+ ++E E
Sbjct: 203 YEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGF 262
Query: 1016 KEEEEKKRRRIRRKR 1030
+ E E + +R KR
Sbjct: 263 ESEYEPINKPVRPKR 277
Score = 39.7 bits (93), Expect = 0.006
Identities = 27/175 (15%), Positives = 70/175 (40%), Gaps = 23/175 (13%)
Query: 817 RGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRR 876
++R++ + ++K + R + E ++ +++ E +E G
Sbjct: 207 VKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFE--- 263
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
S E K R +RK + R + +RR+ R + ++ +
Sbjct: 264 ------SEYEPINKPV--------RPKRKT------KAQRNKEKRRKELEREAKEEKQLK 303
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE 991
++ + R + + + K ++++++E+ ++++ K++K GK K E E
Sbjct: 304 KKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLKRRKLGKHKYPEPPLE 358
Score = 34.3 bits (79), Expect = 0.32
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 10/83 (12%)
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
R +R+ + +R + + +E E + KEEK + KKK + +E KE + KE
Sbjct: 274 RPKRKTKAQRNKEKRRKELEREAKEEK----QLKKKLAQLARLKEIAKEVAQ------KE 323
Query: 1003 EEKEEEEKKEEEEKEEEEKKRRR 1025
+ + ++++ +E E+++ KRR+
Sbjct: 324 KARARKKEQRKERGEKKKLKRRK 346
Score = 29.7 bits (67), Expect = 8.3
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE--EEEEKKKKKKEEEKEEEEKKEEEEK 1016
E+ +E +EE +KE + +KK++ + EEKK E E + + E EE + EE+
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEE 252
Query: 1017 EEEEKKR 1023
++E
Sbjct: 253 SDDESAW 259
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 45.5 bits (108), Expect = 2e-05
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EE EK+++E KE EEK+ + K +K+EKK+++ EK KKK + + K+ +K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 1019 EEKK 1022
+K+
Sbjct: 152 TKKE 155
Score = 44.8 bits (106), Expect = 4e-05
Identities = 21/65 (32%), Positives = 39/65 (60%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE E+++KE K+ EE++ K K KKE+K+K+ E+ KKK + + KK ++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 1018 EEEKK 1022
++++
Sbjct: 152 TKKEE 156
Score = 44.0 bits (104), Expect = 6e-05
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
KE +E ++KE K ++E+K+KKE K ++ KK+ + K K+ K+ KKEE +
Sbjct: 100 KEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKEEGK 158
Score = 38.6 bits (90), Expect = 0.004
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
EE EK++KE + EEK+ + +++KK+KKE++ E+ K++ K + ++
Sbjct: 93 EESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKK 145
Score = 35.9 bits (83), Expect = 0.043
Identities = 14/58 (24%), Positives = 37/58 (63%)
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
EE +K+++ +K+ E+K+ + +K+KK+K+E+K E+ +++ + + ++ +K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKK 149
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 47.8 bits (114), Expect = 2e-05
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 7/57 (12%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+EEEE++KEEKK+EEE+ KE +E ++EE+EEKKKK K K +E E E
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKE----EEVDEEEEKEEKKKKTK---KVKETTTEWEL 86
Score = 47.1 bits (112), Expect = 4e-05
Identities = 26/52 (50%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+EEEEE+K+E KKEEEEK + + EE++KEE+++K KK KE E E
Sbjct: 37 DEEEEEEKEE--KKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 45.1 bits (107), Expect = 2e-04
Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E+E EK E EEEE++K+E K ++E+ +EEE ++++KEE+K++ +K +E E
Sbjct: 28 EKEVEK---EVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEW 84
Query: 1019 EE 1020
E
Sbjct: 85 EL 86
Score = 42.8 bits (101), Expect = 0.001
Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 10/73 (13%)
Query: 967 EEKKKEEEEKKKKE----------GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EE++ +E KK E K ++E EEEEE+K++KKEEE++ +K+EE ++
Sbjct: 4 EERRIKELVKKHSEFINYPIYLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDE 63
Query: 1017 EEEEKKRRRIRRK 1029
EEE++++++ +K
Sbjct: 64 EEEKEEKKKKTKK 76
Score = 42.1 bits (99), Expect = 0.001
Identities = 21/66 (31%), Positives = 45/66 (68%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E+E +KE +EEEE+K+++ + +++ KEEE +++++K+E++K+ ++ KE + E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87
Query: 1021 KKRRRI 1026
K + I
Sbjct: 88 NKTKPI 93
Score = 42.1 bits (99), Expect = 0.001
Identities = 24/62 (38%), Positives = 35/62 (56%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
KEEEE+ KEE+ EEEEK++K+ KTKK ++ E E K K + ++ +EE
Sbjct: 47 KKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRNPKDVTKEEY 106
Query: 1016 KE 1017
Sbjct: 107 AA 108
Score = 42.1 bits (99), Expect = 0.002
Identities = 27/53 (50%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 980 EGKTKKEEKKKEEEEEKKKKKKEEEK---EEEEKKEEEEKEEEEKKRRRIRRK 1029
E + +KE +EEEEEK++KK+EEEK +EEE EEEEKEE++KK ++++
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKET 80
Score = 30.5 bits (69), Expect = 5.1
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 13/46 (28%)
Query: 848 EEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKK 893
EEEK++KKEEEE+ +KEEE +E+EEKKKK
Sbjct: 41 EEEKEEKKEEEEKTTDKEEEV-------------DEEEEKEEKKKK 73
>gnl|CDD|146958 pfam04569, DUF591, Protein of unknown function. This family
represents a conserved region in a number of
uncharacterized plant proteins.
Length = 89
Score = 43.6 bits (103), Expect = 2e-05
Identities = 25/96 (26%), Positives = 31/96 (32%), Gaps = 14/96 (14%)
Query: 861 GGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRR 920
G +EE+E G GRR GG R + R RR+R
Sbjct: 1 AGRREEDEAVGRNGRRTAAAS--------------GGARHGDTGEGEHTGRLRRTRGDEP 46
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R RRR RRR+ R+ R R
Sbjct: 47 TARIRRRELDGGGLRRRQPAARKGGNGDGVTRGRFP 82
Score = 42.0 bits (99), Expect = 7e-05
Identities = 18/72 (25%), Positives = 21/72 (29%), Gaps = 6/72 (8%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR------R 950
GRR R RR + R R RR R R RRR
Sbjct: 1 AGRREEDEAVGRNGRRTAAASGGARHGDTGEGEHTGRLRRTRGDEPTARIRRRELDGGGL 60
Query: 951 RRRRSGKEEEEE 962
RRR+ +
Sbjct: 61 RRRQPAARKGGN 72
Score = 35.1 bits (81), Expect = 0.021
Identities = 17/72 (23%), Positives = 21/72 (29%)
Query: 893 KEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
+E R RR R R RR R R RRR RRR+
Sbjct: 5 EEDEAVGRNGRRTAAASGGARHGDTGEGEHTGRLRRTRGDEPTARIRRRELDGGGLRRRQ 64
Query: 953 RRSGKEEEEEEK 964
+ K +
Sbjct: 65 PAARKGGNGDGV 76
Score = 33.6 bits (77), Expect = 0.066
Identities = 23/103 (22%), Positives = 31/103 (30%), Gaps = 17/103 (16%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGG 870
R GR RR GG R G+ E + ++ +E +
Sbjct: 4 REEDEAVGRNGRRT--------AAASGGARHGDTGEGEHTGRLRRTRGDEPTARIRRREL 55
Query: 871 GGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRR 913
GGG RRR+ K G G R R R+
Sbjct: 56 DGGGLRRRQPAAR---------KGGNGDGVTRGRFPAARASTG 89
Score = 30.5 bits (69), Expect = 0.92
Identities = 12/52 (23%), Positives = 15/52 (28%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
RR R RR R R RR G E +++E
Sbjct: 3 RREEDEAVGRNGRRTAAASGGARHGDTGEGEHTGRLRRTRGDEPTARIRRRE 54
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in association
with pfam07719, pfam00515. There is a single completely
conserved residue L that may be functionally important.
NARP1 is the mammalian homologue of a yeast N-terminal
acetyltransferase that regulates entry into the G(0)
phase of the cell cycle.
Length = 516
Score = 48.0 bits (115), Expect = 2e-05
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E EE++ E E+KK K +K EKK E+EE +K K ++ E KK + E
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAK-KKAEAAAKKAKGPDGET 453
Query: 1020 EKK 1022
+K
Sbjct: 454 KKV 456
Score = 46.5 bits (111), Expect = 6e-05
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+G E KK +K+++ E+K +KE K KKK E KK K + E KK +
Sbjct: 403 NGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG----PDGETKKVDP 458
Query: 1015 E 1015
+
Sbjct: 459 D 459
Score = 42.2 bits (100), Expect = 0.001
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
E EE++ + G E+KK ++++K +KK E++E E+ +++ E KK +
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKG 448
Score = 38.4 bits (90), Expect = 0.020
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
R++ R+++R++ K+ E+EE +K KK+ E KK E KK + +
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 37.6 bits (88), Expect = 0.034
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKK---KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+ EEE+ + + E KK K+ + EKK +K+E EK +KK E ++ +
Sbjct: 392 LLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Score = 37.2 bits (87), Expect = 0.039
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+ EG+ ++ E E+KK +K++ K E++ ++EE ++ KK+
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 36.1 bits (84), Expect = 0.097
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
R++ R+++R+ K E+EE +K KKK E KK K E KK + +
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKK--AKGPDGETKKVDPD 459
Score = 33.8 bits (78), Expect = 0.48
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
R++ R+++R+ +++ KEE E+ K++ + ++ K +G+TKK
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 30.3 bits (69), Expect = 6.4
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGG 871
RKK +K++ + ++ +KEE +K +++ E K+ + G
Sbjct: 411 RKKLRKKQR-------KAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDG 451
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 47.9 bits (115), Expect = 2e-05
Identities = 24/72 (33%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKE-EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EE E++ E+K +E E K+ K K+E E+KKE+ +E++ K EE ++E ++ +E K+E
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585
Query: 1019 EEKKRRRIRRKR 1030
++ + +R+ +
Sbjct: 586 ADEIIKELRQLQ 597
Score = 40.2 bits (95), Expect = 0.006
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R K EE E KE +K +EE ++KKE ++E+K EE E++ ++ +E K+E ++
Sbjct: 529 ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADE 588
Query: 1011 KEEEEKEEEEKKRRRIRRK 1029
+E ++ ++ ++
Sbjct: 589 IIKELRQLQKGGYASVKAH 607
Score = 35.2 bits (82), Expect = 0.19
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK--EEKKKEEEE 975
R ++ + + + ++ + + EE E+E ++ +E KKE +E
Sbjct: 529 ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADE 588
Query: 976 KKKK----EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
K+ + K E E +K+ K EK+E++KK+++EK+EE K ++
Sbjct: 589 IIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVK 644
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 48.0 bits (114), Expect = 3e-05
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 10/76 (13%)
Query: 958 EEEEEEKKKEEKKKEEEEKK----KKEGKTKKEEKKKEE------EEEKKKKKKEEEKEE 1007
EE E +KKKEEK KE+E KK +KE K K + ++ + + EKK +K++ E E
Sbjct: 16 EELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDEN 75
Query: 1008 EEKKEEEEKEEEEKKR 1023
E + + +KKR
Sbjct: 76 PEDFIDPDTPFGQKKR 91
Score = 44.5 bits (105), Expect = 3e-04
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
G E E +KK ++E E KKKKE K K++E KK + +K+ K K + ++ + +
Sbjct: 1 GSRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPK 60
Query: 1016 KEEEEKKRR 1024
K E++ ++R
Sbjct: 61 KSEKKSRKR 69
Score = 42.2 bits (99), Expect = 0.002
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 8/76 (10%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
S E E E+K E EE E+KK KKEEK KE+E +K K ++E K + + ++
Sbjct: 2 SRTESEAEKKILTE---EELERKK-----KKEEKAKEKELKKLKAAQKEAKAKLQAQQAS 53
Query: 1015 EKEEEEKKRRRIRRKR 1030
+ KK + RKR
Sbjct: 54 DGTNVPKKSEKKSRKR 69
Score = 32.9 bits (75), Expect = 1.2
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 823 RRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGG-----GGRRR 877
R+KKKEEK K +KE +K K ++E + + ++ G ++
Sbjct: 20 RKKKKEEKAK-------------EKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKS 66
Query: 878 RRRRRSGKEEEEKKKKEGGGGRRRR 902
R+R + E+ + G+++R
Sbjct: 67 RKRDVEDENPEDFIDPDTPFGQKKR 91
Score = 30.6 bits (69), Expect = 5.5
Identities = 18/65 (27%), Positives = 34/65 (52%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E E+ K +E +K++E+ +KK + +EK +E+ +K + +E E E+E K
Sbjct: 998 ELEKLRNKMDEIQKQQEKLEKKMNASGYKEKVPANIQEEDARKLTKLLQELEFFEKESKR 1057
Query: 1018 EEEKK 1022
E +
Sbjct: 1058 LEAET 1062
Score = 30.6 bits (69), Expect = 6.3
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 22/91 (24%)
Query: 800 PEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEE 859
E K +T+ L R+KKKEEK K +KE +K K ++E
Sbjct: 6 SEAEKKILTEEEL---------ERKKKKEEKAK-------------EKELKKLKAAQKEA 43
Query: 860 EGGEKEEEEGGGGGGRRRRRRRRSGKEEEEK 890
+ + ++ G ++ ++ ++ E++
Sbjct: 44 KAKLQAQQASDGTNVPKKSEKKSRKRDVEDE 74
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 47.3 bits (112), Expect = 3e-05
Identities = 25/110 (22%), Positives = 54/110 (49%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEE 973
R R+R + R +R + + + R +R + ++R R +S KE+E+E KK + ++E
Sbjct: 193 RDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREA 252
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
+ K K + + K + E + + +++ KE +K + +K+
Sbjct: 253 GARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKK 302
Score = 38.5 bits (89), Expect = 0.017
Identities = 22/102 (21%), Positives = 47/102 (46%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
+ R+KR + + + + R +R + ++R R + + + + ++ R+ R K
Sbjct: 201 AKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALA 260
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
+ K E K K E E + T ++K KE ++ K +K+
Sbjct: 261 ALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKK 302
Score = 33.1 bits (75), Expect = 0.72
Identities = 26/131 (19%), Positives = 51/131 (38%)
Query: 863 EKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRR 922
E +E+ R R+R K E++ K + R +R + + R R + + +
Sbjct: 180 EPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQE 239
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGK 982
+ ++ R+ R R + + + + ++ E E KKK +E KK
Sbjct: 240 KEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKM 299
Query: 983 TKKEEKKKEEE 993
KK K ++
Sbjct: 300 EKKAIKNAAKD 310
Score = 30.4 bits (68), Expect = 5.9
Identities = 17/95 (17%), Positives = 42/95 (44%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
R R+R + R +R + + + K + KK++ + K +E++K+ K +K E++
Sbjct: 193 RDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREA 252
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+ K + + + + + E E ++
Sbjct: 253 GARLKALAALKGKAEAKNKAEIEAEALASATAVKK 287
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1, of
polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 47.1 bits (112), Expect = 3e-05
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 954 RSGKEEEEEEKKK---EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
RS EEE EEK+K + KK E++ + E E EEEE ++ + K+EEEK
Sbjct: 280 RSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEK 339
Query: 1011 KEEEEKEEEEKKRRRIR 1027
+E + ++R R R
Sbjct: 340 EEVTVSPDGGRRRGRRR 356
Score = 46.0 bits (109), Expect = 9e-05
Identities = 23/81 (28%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK--- 1011
S +++ +EKK++++ E K++ E ++ K + E+E + E+E E+E K
Sbjct: 220 SFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGE 279
Query: 1012 ----EEEEKEEEEKKRRRIRR 1028
EEE +E+E++KR+R+++
Sbjct: 280 RSDSEEETEEKEKEKRKRLKK 300
Score = 43.7 bits (103), Expect = 5e-04
Identities = 20/66 (30%), Positives = 36/66 (54%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
SGK + E + E +E++ + E K E EEE E+K+K+K + ++ + E+E
Sbjct: 248 SGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDE 307
Query: 1015 EKEEEE 1020
++E E
Sbjct: 308 DEEMEI 313
Score = 42.1 bits (99), Expect = 0.001
Identities = 34/175 (19%), Positives = 66/175 (37%), Gaps = 36/175 (20%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRR 904
KK +EKK+KKE E ++E EE G ++ + + G
Sbjct: 223 KKKTKEKKEKKEASESTVKEESEEESGK------------RDVILEDESAEPTGLDEDED 270
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
+ + RS + + +R+R ++ ++E+EE +
Sbjct: 271 EDEPKPSGERSDSEEETEEKEK------------------EKRKRLKKMMEDEDEDEEME 312
Query: 965 KKEEKKKEEEEKKKKEG------KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
E EEEE ++ E + +KEE + +++ ++ K++ K EE
Sbjct: 313 IVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGRRRVMKKKTFKDEE 367
Score = 41.0 bits (96), Expect = 0.003
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
S +EE EE+ + E+E + G ++E + E + ++ EEE EE+EK++ +
Sbjct: 238 STVKEESEEESGKRDVILEDESAEPTGL-DEDEDEDEPKPSGERSDSEEETEEKEKEKRK 296
Query: 1015 EKEEEEK 1021
++ +
Sbjct: 297 RLKKMME 303
Score = 38.7 bits (90), Expect = 0.015
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE-----------EEKKKKKKEE 1003
E + + KK + +E +K EGKT + + +KK K+K+E
Sbjct: 172 MSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKE 231
Query: 1004 EKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+KE E +EE EEE KR I
Sbjct: 232 KKEASESTVKEESEEESGKRDVILED 257
Score = 38.3 bits (89), Expect = 0.019
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 26/107 (24%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+R ++E E +E + E+E K E +EE +++E+E++K+ KK E E+E+
Sbjct: 249 GKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDED 308
Query: 1010 KKEE-------------------EEKEEEEKKR-------RRIRRKR 1030
++ E K+EEEK+ R R +R
Sbjct: 309 EEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRGRR 355
Score = 37.5 bits (87), Expect = 0.031
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKT--------KKEEKKKEEEEEKKKKKKEEEKEEE 1008
KE E+ + + K K+ K+ KK ++KKE++E + KEE +EE
Sbjct: 189 KETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEES 248
Query: 1009 EKKEEEEKEEEEKK 1022
K++ ++E +
Sbjct: 249 GKRDVILEDESAEP 262
Score = 36.0 bits (83), Expect = 0.11
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKK-----KEGKTKKEEKKKEEEEEKKKKKKEEE 1004
+ + K E + K K+ +K + KTK++++KKE E K++ EEE
Sbjct: 188 SKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVKEESEEE 247
Query: 1005 KEEEEKKEEEEKEEEEKKRR 1024
+ + E+E E
Sbjct: 248 SGKRDVILEDESAEPTGLDE 267
Score = 33.3 bits (76), Expect = 0.69
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRS 883
+ E K +R +KE+ K+ KK E+E ++E E
Sbjct: 269 EDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPE 328
Query: 884 GKEEEEKKKKE------GGGGRRRRRRK 905
+K++++ GGRRR RR+
Sbjct: 329 PPPLPKKEEEKEEVTVSPDGGRRRGRRR 356
Score = 31.3 bits (71), Expect = 2.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 825 KKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEE 858
KK+EEK++ G RRR ++ +KK K+EE
Sbjct: 334 KKEEEKEEVTVSPDGGRRRGRRRVMKKKTFKDEE 367
Score = 31.3 bits (71), Expect = 3.1
Identities = 13/77 (16%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
+RR K K K K E K + ++ + KE
Sbjct: 136 KRRTGVGLPPVAPAASPALKPTANGKRPSSKPPK--SIMSPEVKVKSAKKTQDTSKETTT 193
Query: 1006 EEEEKKEEEEKEEEEKK 1022
E+ E K + ++
Sbjct: 194 EKTEGKTSVKAASLKRN 210
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C terminus.
The C terminus of the plasma membrane Nha1 antiporter
plays an important role in the immediate cell response to
hypo-osmotic shock which prevents an execessive loss of
ions and water. This domain is found with pfam00999.
Length = 430
Score = 47.1 bits (112), Expect = 3e-05
Identities = 26/115 (22%), Positives = 45/115 (39%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
+ GG RR R+KK+ RR+ RRRRR+RR+ + + +RR
Sbjct: 47 PARPAGGMLRRVRKKKKGSRAGRRASSLRRRRRQRRKEPQAGTGALGPISQSAISPQRRS 106
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
+ E + + ++ E + E EE + K +E+E+
Sbjct: 107 STGENSAESDNTSYGLSKLAEDSENIDVRPVYESDERSGISEEGSRPSKLREQEQ 161
Score = 42.9 bits (101), Expect = 6e-04
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 14/122 (11%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR------RRRRRRRRRR 950
GG RR RKK++ SR R R RRRRR+RR+ + + +
Sbjct: 52 GGMLRRVRKKKKGSRAGR--------RASSLRRRRRQRRKEPQAGTGALGPISQSAISPQ 103
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
RR +G+ E + K E+ + + + E ++ E+ + + ++E+
Sbjct: 104 RRSSTGENSAESDNTSYGLSKLAEDSENIDVRPVYESDERSGISEEGSRPSKLREQEQRP 163
Query: 1011 KE 1012
E
Sbjct: 164 TE 165
Score = 33.6 bits (77), Expect = 0.57
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 873 GGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRR 914
GG RR R KKKK GRR ++RRR RR+
Sbjct: 52 GGMLRRVR---------KKKKGSRAGRRASSLRRRRRQRRKE 84
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 47.4 bits (113), Expect = 3e-05
Identities = 21/109 (19%), Positives = 55/109 (50%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
+ + R R + RR +R ++ E EEE + +++ EE +++ ++
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+++ E ++E ++ +K ++ ++ ++ E+E EE++K+ + RK
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503
Score = 45.1 bits (107), Expect = 2e-04
Identities = 28/127 (22%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
+ K+ R R + RR +R ++ R +R +E E+
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
E + E ++E +K +K+ +E + ++ E+ +K+ EE+K+ E E E K E +
Sbjct: 455 LESELERFRREVRDKVRKD----REIRARDRRIERLEKELEEKKKRVE--ELERKLAELR 508
Query: 1022 KRRRIRR 1028
K R++
Sbjct: 509 KMRKLEL 515
Score = 44.3 bits (105), Expect = 3e-04
Identities = 30/147 (20%), Positives = 58/147 (39%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
+ + +E+E +++E +R K+ R +R +R +
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
R RR R + R+ + ++ EK+ EE++K+ +E + K E +K + E
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLE 514
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
K + E+ E E+ EEE
Sbjct: 515 LSGKGTPVKVVEKLTLEAIEEAEEEYG 541
Score = 43.2 bits (102), Expect = 7e-04
Identities = 32/145 (22%), Positives = 58/145 (40%)
Query: 849 EEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRR 908
+ K+++ E+ G +EEE +R ++ E E++ E +R+ +
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEK 454
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE 968
RR R + R+ R R R RR R + +++R K E + +K E
Sbjct: 455 LESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLE 514
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEE 993
+ K E T + ++ EEE
Sbjct: 515 LSGKGTPVKVVEKLTLEAIEEAEEE 539
Score = 42.8 bits (101), Expect = 9e-04
Identities = 29/140 (20%), Positives = 56/140 (40%)
Query: 886 EEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
+EEE+ +++ G RR R ++ R +R +R +
Sbjct: 398 KEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLES 457
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
R RR K ++ E + +++ E EK+ +E K + EE +++ E +K +K E
Sbjct: 458 ELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSG 517
Query: 1006 EEEEKKEEEEKEEEEKKRRR 1025
+ K E+ E +
Sbjct: 518 KGTPVKVVEKLTLEAIEEAE 537
Score = 39.7 bits (93), Expect = 0.008
Identities = 47/167 (28%), Positives = 64/167 (38%), Gaps = 11/167 (6%)
Query: 844 RGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRR 903
RG E K +EEE EKE E RR E+ KK E R
Sbjct: 386 RGYPLAEALSKVKEEERPREKEGTE--------EEERREITVYEKRIKKLEETVERLEEE 437
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
+ +R R + R RR R + R+ R R R RR R KE EE++
Sbjct: 438 NSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLE---KELEEKK 494
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
K+ EE +++ E +K + + EK + EE EEE
Sbjct: 495 KRVEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYG 541
Score = 36.6 bits (85), Expect = 0.085
Identities = 46/249 (18%), Positives = 74/249 (29%), Gaps = 66/249 (26%)
Query: 847 KEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKK 906
+E+E +++E E ++ + R K E E+ K+E R +
Sbjct: 404 REKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR 463
Query: 907 RRRS---RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR----------- 952
R R+ R R R RR R + +++R R+ R+ R+
Sbjct: 464 REVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVK 523
Query: 953 -----RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE-------------------- 987
EE EEE +E E G EE
Sbjct: 524 VVEKLTLEAIEEAEEEYGIKEGDVILVEDPSGGGARTAEELIDKKPRAIIRGEEMSHAAA 583
Query: 988 ---------------------------KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+E ++ KK E+ E +KEE+ E
Sbjct: 584 EEFFKNEIPVLPEGDVQIIRLDEFAVVDSEELRRAIEEWKKRFEERERRQKEEDILRIIE 643
Query: 1021 KKRRRIRRK 1029
+ RR RR+
Sbjct: 644 EYRRERRRE 652
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and
chromosome partitioning].
Length = 420
Score = 47.0 bits (112), Expect = 4e-05
Identities = 16/112 (14%), Positives = 36/112 (32%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R + +R ++ + + R++ + E ++KK EE + E
Sbjct: 177 RAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRL 236
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
K + + K E + + E K+ E + ++ I
Sbjct: 237 KNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLISS 288
Score = 35.5 bits (82), Expect = 0.13
Identities = 30/204 (14%), Positives = 64/204 (31%), Gaps = 24/204 (11%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
K E++ ++ + E++ E E + + + ++ +K+ R +
Sbjct: 53 KIREQQDQRAKLEKQLKSLETEIA-----SLEAQLIETADDLKKLRKQIADLNARLNALE 107
Query: 906 KRRRSRRR----------RSRRRRRRRRRRRRRRRRRRRR---------RRRRRRRRRRR 946
+ R +RR RS R +R R R R +
Sbjct: 108 VQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALK 167
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
++ E E+ + E+ ++ K + +E KK + + +++ E
Sbjct: 168 ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLE 227
Query: 1007 EEEKKEEEEKEEEEKKRRRIRRKR 1030
E E K E + R
Sbjct: 228 ELRANESRLKNEIASAEAAAAKAR 251
Score = 33.9 bits (78), Expect = 0.50
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 3/90 (3%)
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK--- 999
R + + E+ ++ K + EE +K + ++ +K+ EE + +
Sbjct: 177 RAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRL 236
Query: 1000 KKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K E E + E + R
Sbjct: 237 KNEIASAEAAAAKAREAAAAAEAAAARARA 266
>gnl|CDD|216147 pfam00844, Gemini_coat, Geminivirus coat protein/nuclear export
factor BR1 family. It has been shown that the 104
N-terminal amino acids of the maize streak virus coat
protein bind DNA non- specifically. This family also
includes various geminivirus movement proteins that are
nuclear export factors or shuttles. One member BR1
facilitates the export of both ds and ss DNA form the
nucleus.
Length = 244
Score = 45.8 bits (109), Expect = 4e-05
Identities = 17/44 (38%), Positives = 21/44 (47%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
RRR RRSR R RR ++R +R RR+ R R R
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
Score = 44.2 bits (105), Expect = 2e-04
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
RRR + RR R R RR ++R +R RR+ R R R
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
Score = 44.2 bits (105), Expect = 2e-04
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
RRR RR R R RR ++R +R RR+ R R RS
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRSP 45
Score = 44.2 bits (105), Expect = 2e-04
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
RR+ SRR R+R RR ++R +R RR+ R R R
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
Score = 43.8 bits (104), Expect = 2e-04
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
RRR RR R +RR ++R +R RR+ R R R
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
Score = 42.3 bits (100), Expect = 7e-04
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
R R RR R R RR ++R +R RR+ R R R
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
Score = 42.3 bits (100), Expect = 7e-04
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
RRR R R R RR ++R +R RR+ R R R
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
Score = 41.9 bits (99), Expect = 9e-04
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
RR SRR R R RR ++R +R RR+ R R R
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
Score = 41.9 bits (99), Expect = 0.001
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
+RR + R R R RR ++R +R RR+ R R R
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
Score = 40.7 bits (96), Expect = 0.002
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R++ RR R RR ++R +R RR+ R R R
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
Score = 38.1 bits (89), Expect = 0.016
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
RR RR R R RR ++R +R RR+ R R +
Sbjct: 2 RRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
Score = 37.3 bits (87), Expect = 0.023
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
RRR RR R R RR ++R +R RR G+
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGR 37
Score = 36.1 bits (84), Expect = 0.070
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
+++ R R R RR + ++R +R RR+ R R R
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
Score = 33.0 bits (76), Expect = 0.55
Identities = 11/44 (25%), Positives = 15/44 (34%)
Query: 878 RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRR 921
RRR + ++R KR R+ RS R R
Sbjct: 1 RRRLNFDSRRSRARAPTRRSTNKKRGWSKRPMRRKGRSYRMYRS 44
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 45.5 bits (108), Expect = 5e-05
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E+E ++ K E +++ ++ + + + K +E+ E EE +K++ E+ +E E K EE K+
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Query: 1018 EEEK 1021
E K
Sbjct: 62 ENNK 65
Score = 44.0 bits (104), Expect = 1e-04
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E++ K+ K + EE KE + K+E+K KEE+ E ++ +KEE E+ E+ E + EE +
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Query: 1021 K 1021
Sbjct: 61 D 61
Score = 39.4 bits (92), Expect = 0.004
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGK----TKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
K E EE +E + +EE+K K+E +KEE ++ EE + K +E + E + KE
Sbjct: 9 KHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKE 68
Query: 1013 EEEKEEEE 1020
E +K E E
Sbjct: 69 ENKKLENE 76
Score = 38.6 bits (90), Expect = 0.009
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E +EE K +E+ E EE +K+E EE + + EE K + + ++E ++ + E E
Sbjct: 21 NENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELE 78
Score = 31.3 bits (71), Expect = 2.2
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 958 EEEEEEKKKEEKKKEEEEKK-------KKEGKTKKEEKKKEEEEEKKKKKK----EEEKE 1006
+ E EE +KEE ++ EE K E KEE KK E E + K + E +
Sbjct: 33 DLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYD 92
Query: 1007 EEEKKEEEEKEE 1018
K+ +EKE
Sbjct: 93 NYRKRTAKEKEG 104
Score = 30.1 bits (68), Expect = 4.2
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K +EE+ + +E +K+E E ++ E K +E ++E K K+E +K E E + +++
Sbjct: 28 KGKEEDLEFEEIEKEEIIEDSEES----NEVKIEELKDENNKLKEENKKLENELEALKDR 83
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are RNase
Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in turnover
of yitJ riboswitch [Transcription, Degradation of RNA].
Length = 514
Score = 46.8 bits (112), Expect = 5e-05
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 16/168 (9%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
+R ++ EE K+ E +K+ + + R R + RR +
Sbjct: 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQ 79
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE--EKKKEEEEKKKKEGKTKKEEKKKEE 992
R RR +R R+ KEE E+K+KE K+K +EK+++ + E++++ E
Sbjct: 80 RLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELE 139
Query: 993 E------EEKKK---KKKEEEKEEE-----EKKEEEEKEEEEKKRRRI 1026
EE K+ ++ EEE E ++ EEE KEE +KK + I
Sbjct: 140 RISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKEI 187
Score = 41.4 bits (98), Expect = 0.002
Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 15/98 (15%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK---EGKTKKEEKKKEEEEEKKKKKKEE 1003
R+R ++ G EE ++ EE KKE E KK+ E K + + + E E E K+++ E
Sbjct: 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNEL 78
Query: 1004 EKEE----------EEKKEEEEKEEE--EKKRRRIRRK 1029
++ E + K E +K+EE EKK + + K
Sbjct: 79 QRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNK 116
Score = 40.7 bits (96), Expect = 0.004
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE---EKKKE--------EEEKKKKEGKT 983
R+R ++ +R ++E E KKE E K+E E E K++ +
Sbjct: 19 RKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNEL 78
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
++ E++ + EE +K E ++EE E++EKE K++
Sbjct: 79 QRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKN 119
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 44.8 bits (106), Expect = 5e-05
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 959 EEEEEKK----KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
E + E K KEEK+ + KK K K KK KK E EKK + E E+K E
Sbjct: 96 EAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEA 155
Query: 1015 EKEEEEK 1021
E+
Sbjct: 156 AAVAAEE 162
Score = 42.5 bits (100), Expect = 3e-04
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
KE + KK + K ++ KK KK + + E +KK + EE E
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAE 167
Query: 1015 EKEEEE 1020
E+E EE
Sbjct: 168 EEEAEE 173
Score = 42.5 bits (100), Expect = 3e-04
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 953 RRSGKEEEEEEKKKEEKKKE-EEEKKKKEGKTKKEEKKKEEEEEKKKKKK---EEEKEEE 1008
+ + K+++ + KK KK E EKK E + + +KK E ++ EE+E E
Sbjct: 113 KVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAE 172
Query: 1009 EKKEEEEKEEEEK 1021
E EE EE
Sbjct: 173 EAPAEEAPAEESA 185
Score = 39.4 bits (92), Expect = 0.004
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
K ++ +K E +K+ E + + KK + E+ +EEE EE +E
Sbjct: 122 SKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPA 181
Query: 1016 KEEEE 1020
+E E
Sbjct: 182 EESAE 186
>gnl|CDD|147747 pfam05762, VWA_CoxE, VWA domain containing CoxE-like protein. This
family is annotated by SMART as containing a VWA (von
Willebrand factor type A) domain. The exact function of
this family is unknown. It is found as part of a CO
oxidising (Cox) system operon is several bacteria.
Length = 223
Score = 45.4 bits (108), Expect = 5e-05
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRR---RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R RRR RR+RRRR R RR R R R RR R R+ RR
Sbjct: 2 ARALAALLLGLARRRRRRKRRRRGGRIDLRRTLRANLRHGGEPVRLVRREPRLRKPRR 59
Score = 44.3 bits (105), Expect = 1e-04
Identities = 20/54 (37%), Positives = 22/54 (40%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
RRR RR+R RR R RR R R R RR R R+ RR
Sbjct: 6 AALLLGLARRRRRRKRRRRGGRIDLRRTLRANLRHGGEPVRLVRREPRLRKPRR 59
Score = 43.1 bits (102), Expect = 3e-04
Identities = 22/47 (46%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 898 GRRRRRRKKRRRSRR---RRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
RRRRRRK+RRR R RR+ R R R RR R R+ RR
Sbjct: 13 ARRRRRRKRRRRGGRIDLRRTLRANLRHGGEPVRLVRREPRLRKPRR 59
Score = 40.4 bits (95), Expect = 0.002
Identities = 18/42 (42%), Positives = 19/42 (45%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
R RRRRRR+RRRR R RR R R G E
Sbjct: 2 ARALAALLLGLARRRRRRKRRRRGGRIDLRRTLRANLRHGGE 43
Score = 38.5 bits (90), Expect = 0.010
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
G RRRR+++RR R R RR R R R RR R R+ RR
Sbjct: 11 GLARRRRRRKRRRRGGRIDLRRTLRANLRHGGEPVRLVRREPRLRKPRR 59
Score = 32.7 bits (75), Expect = 0.76
Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 17/62 (27%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
RRRRR+R RRR R RR+ R R R RR R R+
Sbjct: 15 RRRRRKR-----------------RRRGGRIDLRRTLRANLRHGGEPVRLVRREPRLRKP 57
Query: 935 RR 936
RR
Sbjct: 58 RR 59
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 46.7 bits (112), Expect = 5e-05
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 17/126 (13%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE--EKKKEEEE 975
+ R + R RR ++ +R ++ R+ K EEE EKK++ E+K++E E
Sbjct: 68 KLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELE 127
Query: 976 KKKKEGKTKKEEKKKEEE-------EEKKK---KKKEEEKEEE-----EKKEEEEKEEEE 1020
KK++E + EE+ +E E EE K+ +K EEE E ++ EEE KEE +
Sbjct: 128 KKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEAD 187
Query: 1021 KKRRRI 1026
KK + I
Sbjct: 188 KKAKEI 193
Score = 46.7 bits (112), Expect = 6e-05
Identities = 21/85 (24%), Positives = 45/85 (52%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
R++ + EEE + +E KK+ E KK+ + K+E K E EK+ +++ E
Sbjct: 25 RKKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNEL 84
Query: 1006 EEEEKKEEEEKEEEEKKRRRIRRKR 1030
++ EK+ +++E ++K + ++
Sbjct: 85 QKLEKRLLQKEENLDRKLELLEKRE 109
Score = 42.5 bits (101), Expect = 0.001
Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 957 KEEEEEEKKKEEKKKE--EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
KE E K++ K + E+E +++ + +K EK+ ++EE +K E ++ EE+ E++
Sbjct: 56 KEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKK 115
Query: 1015 EKEEEEKKR 1023
EKE E+K++
Sbjct: 116 EKELEQKQQ 124
Score = 40.5 bits (96), Expect = 0.004
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE-EEEEKKKKKKEEE-KEEEEKKEEE 1014
KE E +K+ + KEE K + E + + E++ E ++ EK+ +KEE + E E+
Sbjct: 49 KEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
Query: 1015 EKEEEEKKRRRIRRKR 1030
E+E E+K++ ++++
Sbjct: 109 EEELEKKEKELEQKQQ 124
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 45.2 bits (107), Expect = 5e-05
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E EK K K K E K ++ + +K + K + + +K ++K+EE+K+ ++
Sbjct: 17 ESEKYKANKDKGNPEIYNKI-NSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKK 75
Query: 1021 KK 1022
KK
Sbjct: 76 KK 77
Score = 42.1 bits (99), Expect = 5e-04
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
+ E +K + + K K + + E+ K K + E +K +EK+EE+KK
Sbjct: 14 RALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKP 73
Query: 1024 RR 1025
++
Sbjct: 74 KK 75
Score = 35.9 bits (83), Expect = 0.071
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
R +R R S K + ++K E + + K K K K + E KK +E++
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKK 67
Query: 1005 KEEEEKKE 1012
+E+++ K+
Sbjct: 68 EEKKKPKK 75
Score = 33.2 bits (76), Expect = 0.50
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
++ EK K K + E+ KK +EKK+E+++ KKKK + + ++E
Sbjct: 40 DKAIEKFKLLIKAQMAERVKKLH---SQEKKEEKKKPKKKKVPLQVNPAQLFVDDE 92
Score = 32.1 bits (73), Expect = 1.2
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT-------KKEEKKKEE 992
R +R R + ++ K++ E + +++ +K K KK ++++
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKK 67
Query: 993 EEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE+KK KKK+ + + + E
Sbjct: 68 EEKKKPKKKKVPLQVNPAQLFVDDE 92
Score = 29.4 bits (66), Expect = 8.0
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 10/78 (12%)
Query: 817 RGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRR 876
R +R R + E+ K K +G + +++ +K + + E +
Sbjct: 8 RAKRVVRALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHS---- 63
Query: 877 RRRRRRSGKEEEEKKKKE 894
K+EE+KK K+
Sbjct: 64 ------QEKKEEKKKPKK 75
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of the
RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 46.7 bits (111), Expect = 5e-05
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR-------RRRRRRRRRRRSGKEEEEEEK 964
R R RRRR R R + + R + R +RR R EE +E
Sbjct: 314 RSRVELRRRRVNDVIRPLVREHNNDQLNVKLRNPSTKESKMRDKRRARLDPIDFEEVDED 373
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+ EE+++ +E +++EG+ +EE + E+ + + + E K ++E + +
Sbjct: 374 EDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
Score = 38.9 bits (91), Expect = 0.012
Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGK 982
R R RRRR R R + + R+ +E + + K + + + ++ +
Sbjct: 314 RSRVELRRRRVNDVIRPLVREHNNDQLNVKLRNPSTKESKMRDKRRARLDPIDFEEVD-- 371
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
+ E++++E+ ++ ++++ E+ EEE + E+ E
Sbjct: 372 -EDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSD 415
Score = 32.0 bits (73), Expect = 1.7
Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 22/109 (20%)
Query: 808 TQIRLSRNRRGR----------------RRRRRKKKEEKKKWKRR------GGGRRRRRG 845
+++ L R R + R KE K + KRR
Sbjct: 315 SRVELRRRRVNDVIRPLVREHNNDQLNVKLRNPSTKESKMRDKRRARLDPIDFEEVDEDE 374
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKE 894
+EEE++ + EEEEG + EEE G + E K KE
Sbjct: 375 DEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKE 423
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 43.8 bits (104), Expect = 6e-05
Identities = 16/67 (23%), Positives = 40/67 (59%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
+KK K ++K+K+E + ++ E ++ +EEE+ + E+E + ++++ E E ++K+
Sbjct: 87 RKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Query: 1024 RRIRRKR 1030
+ + K
Sbjct: 147 LKEQMKM 153
Score = 40.7 bits (96), Expect = 8e-04
Identities = 17/51 (33%), Positives = 35/51 (68%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
++EEEEE++ E ++ +EEE+ + + + + K+E+ E ++K+KE KE+
Sbjct: 100 EKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 40.3 bits (95), Expect = 0.001
Identities = 16/68 (23%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+K ++ +++EK+++E + + E+ EEE+ + EKE + K E+ +E E K+
Sbjct: 88 KKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQI----DELLEKELAKLKREKRRENERKQ 143
Query: 1023 RRRIRRKR 1030
+ ++ +
Sbjct: 144 KEILKEQM 151
Score = 38.0 bits (89), Expect = 0.006
Identities = 20/59 (33%), Positives = 37/59 (62%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+ K+EK++EEEE+ + E ++E+ + E+E K K+E+ +E E K++E KE+
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 37.7 bits (88), Expect = 0.009
Identities = 18/68 (26%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
R++ R+ +++E++++EE++ E EE ++E + ++ E+E K K++K E E +
Sbjct: 87 RKKVRKLLGLDKKEKEEEEEEEVEVEELDEEE----QIDELLEKELAKLKREKRRENERK 142
Query: 1009 EKKEEEEK 1016
+K+ +E+
Sbjct: 143 QKEILKEQ 150
Score = 35.0 bits (81), Expect = 0.081
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK----KEEEEKEEEEKKRRRIRRKR 1030
K +K+ + KKE+EEE++++ + EE +EEE+ E+E + + +KRR RK+
Sbjct: 85 KWRKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQ 143
Score = 33.8 bits (78), Expect = 0.17
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 956 GKEEEEEEKKKEEKKKEEE---EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
KEEEEEE+ + E+ EEE E +KE K EK++E E ++K+ KE+ K
Sbjct: 100 EKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
>gnl|CDD|109943 pfam00906, Hepatitis_core, Hepatitis core antigen. The core
antigen of hepatitis viruses possesses a carboxyl
terminus rich in arginine. On this basis it was
predicted that the core antigen would bind DNA. There is
some experimental evidence to support this.
Length = 182
Score = 44.4 bits (105), Expect = 8e-05
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
RRR R RRR RRRR + RRRR + S +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQC 182
Score = 43.6 bits (103), Expect = 1e-04
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
RRR R RRR RRRR + RRRR + S
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSS 180
Score = 42.9 bits (101), Expect = 2e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
RRR R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 42.9 bits (101), Expect = 2e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
RRR R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 42.9 bits (101), Expect = 2e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
RRR R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 42.9 bits (101), Expect = 2e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
RRR R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 42.9 bits (101), Expect = 2e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
RRR R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 42.9 bits (101), Expect = 2e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RRR R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 42.9 bits (101), Expect = 2e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
RRR R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 42.9 bits (101), Expect = 2e-04
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
RRR R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 42.5 bits (100), Expect = 3e-04
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
RR RS RRR RRRR + RRRR + +
Sbjct: 150 RRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 42.1 bits (99), Expect = 4e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
RRR R RRR+ R RR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 42.1 bits (99), Expect = 4e-04
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
R R R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 41.7 bits (98), Expect = 5e-04
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
++R RS RRR+ RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 41.3 bits (97), Expect = 7e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
R++ R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 40.6 bits (95), Expect = 0.001
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
R R R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 40.2 bits (94), Expect = 0.002
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
RRR R R R RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 39.8 bits (93), Expect = 0.002
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
RR R RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 39.8 bits (93), Expect = 0.003
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
RRR RRR RRRR + RRRR + +
Sbjct: 149 RRRGRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 38.2 bits (89), Expect = 0.008
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
GR RRR R RR +S RRRR + +
Sbjct: 152 GRSPRRRTPSPRRRRSQSPRRRRSQSPSSQ 181
Score = 32.1 bits (73), Expect = 1.0
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 11/44 (25%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRR 919
RRR R + RRRR + R RR +S +
Sbjct: 149 RRRGRSPRRRTP-----------SPRRRRSQSPRRRRSQSPSSQ 181
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 45.2 bits (107), Expect = 8e-05
Identities = 16/66 (24%), Positives = 32/66 (48%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ E E +++ K E E + K +EK K E++ KK K K + K + + K + +
Sbjct: 56 PQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Query: 1017 EEEEKK 1022
+ ++
Sbjct: 116 KPKKPP 121
Score = 45.2 bits (107), Expect = 8e-05
Identities = 15/70 (21%), Positives = 32/70 (45%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E EE + E E +++ + E E K K+K + EK+ ++ K + + + +
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKP 107
Query: 1021 KKRRRIRRKR 1030
K + + + K
Sbjct: 108 KPKVKPQPKP 117
Score = 43.6 bits (103), Expect = 2e-04
Identities = 13/65 (20%), Positives = 32/65 (49%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E E E++ + + E + K K++ K +++ ++ K K K + K + + K + + +
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPK 118
Query: 1018 EEEKK 1022
+ K
Sbjct: 119 KPPSK 123
Score = 43.6 bits (103), Expect = 2e-04
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EE+ + E + E K + K K E+K K+ + + K K K + K + + K ++
Sbjct: 62 PPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPP 121
Query: 1017 EEEEKKR 1023
+ K
Sbjct: 122 SKTAAKA 128
Score = 42.9 bits (101), Expect = 4e-04
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 956 GKEEEEEEKKKEEKKKE--EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
EE+ + + E E + K+K KK +K K + + K K K + + + + KK
Sbjct: 62 PPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPP 121
Query: 1014 EEKEEEEK 1021
+ +
Sbjct: 122 SKTAAKAP 129
Score = 35.9 bits (83), Expect = 0.068
Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
E E + K KE+ + +K K ++ K + + + K K K + + + +K +
Sbjct: 69 PPTEPETPPEPTPPKPKEKPKPEK-----KPKKPKPKPKPKPKPKPKVKPQPKPKKPPSK 123
Query: 1015 EKEEEE 1020
+
Sbjct: 124 TAAKAP 129
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 46.3 bits (110), Expect = 9e-05
Identities = 27/165 (16%), Positives = 48/165 (29%), Gaps = 8/165 (4%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGG 870
L R R + R + EEE+++ EE + E E
Sbjct: 334 ELERARADAEALQ-------AAAADARQAIREAESRLEEERRRLDEEAGRLDD-AERELR 385
Query: 871 GGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
+ R R+G + + + + +RR+ + R +R + R
Sbjct: 386 AAREQLARAAERAGLSPAHTAEPDAALAAQELQELGALDARRQDADRVIAQRSEQVALLR 445
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
RR R R RR E+ + ++ E
Sbjct: 446 RRDDVADRAEATHAAARARRDELDEEAEQAAARAELADEAVHREG 490
Score = 45.6 bits (108), Expect = 1e-04
Identities = 36/232 (15%), Positives = 63/232 (27%), Gaps = 20/232 (8%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGR-----RRRRGKKEEEKKKKKEEEEEGGEKE 865
L+R R R+R +E R RR + E + + + E K
Sbjct: 760 ELARELRALGARQRALADE---LAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKA 816
Query: 866 EEEGGGGGGRRRRRRRRSG-----------KEEEEKKKKEGGGGRRRRRRKKRRRSRRRR 914
RR R + + K+ G + R R
Sbjct: 817 AAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATR 876
Query: 915 SRRRRRRRRR-RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEE 973
+ +R R R R R R R S +E + + + +
Sbjct: 877 AAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAA 936
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+E E EE + ++K E + + E ++ + R
Sbjct: 937 LASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAEARDHAIGQLRE 988
Score = 36.7 bits (85), Expect = 0.073
Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 15/143 (10%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR-----RRRRRRRRRRRRRRRRRRS 955
R RR R RRR +R R + + + R R R R R R R
Sbjct: 255 RYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREAD 314
Query: 956 GKEEEEEE----------KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
E ++ E + + E + ++ ++ E E+++++ +EE
Sbjct: 315 ALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEA 374
Query: 1006 EEEEKKEEEEKEEEEKKRRRIRR 1028
+ E E + E+ R R
Sbjct: 375 GRLDDAERELRAAREQLARAAER 397
Score = 34.8 bits (80), Expect = 0.30
Identities = 17/105 (16%), Positives = 33/105 (31%)
Query: 871 GGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
G R R R RR + + + R + +R + R R
Sbjct: 732 GAAARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAA 791
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
RR R+ R R R++ ++ + E +++ +
Sbjct: 792 HRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELERDAAD 836
Score = 34.0 bits (78), Expect = 0.47
Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 29/123 (23%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRR----RRRKKRRRSRRRRSRRRRRRRRRR----- 925
RRR R RS + + ++ ++ G R R ++ +R R R R
Sbjct: 265 RRRATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324
Query: 926 ------------RRRRRRRRRRRRRRRRR--------RRRRRRRRRRRRSGKEEEEEEKK 965
R R + R R RRR +G+ ++ E +
Sbjct: 325 GSPAYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAEREL 384
Query: 966 KEE 968
+
Sbjct: 385 RAA 387
Score = 34.0 bits (78), Expect = 0.59
Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 2/103 (1%)
Query: 857 EEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSR 916
+E E +EE E R + + + ++ R
Sbjct: 290 DELETAREEERELDAR--TEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQA 347
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
R+ R R RRR R R R+ +E+
Sbjct: 348 AAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQ 390
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 45.3 bits (106), Expect = 1e-04
Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 2/145 (1%)
Query: 878 RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
R R R KE + + EG G RR ++ R + RR R RR R+ R ++ R
Sbjct: 60 RSRWRHMKEAKSMGRHEGAG--RREGTREARMPSKELWMRRLRILRRLLRKYREEKKIDR 117
Query: 938 RRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK 997
R + + R E K K EKKKE + ++ K K+E+ + + +++
Sbjct: 118 HIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAKRLKDEQHRHKARKQE 177
Query: 998 KKKKEEEKEEEEKKEEEEKEEEEKK 1022
+K+E+++E +++ ++K
Sbjct: 178 LRKREKDRERARREDAAAAAAAKQK 202
Score = 38.0 bits (87), Expect = 0.020
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 11/140 (7%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR------RRRRRRRRRRRRRRRR 954
R+ K RSR R + + R RR R R RR R RR R+ R
Sbjct: 52 RKPVKVHSRSRWRHMKEAKSMGRHEGAGRREGTREARMPSKELWMRRLRILRRLLRKYRE 111
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKE-----GKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
K + ++ K K + K+ K K E+KK+ + E+ K+ ++++
Sbjct: 112 EKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAAKRLKDEQHRH 171
Query: 1010 KKEEEEKEEEEKKRRRIRRK 1029
K ++E + EK R R RR+
Sbjct: 172 KARKQELRKREKDRERARRE 191
Score = 35.3 bits (80), Expect = 0.16
Identities = 43/183 (23%), Positives = 66/183 (36%), Gaps = 32/183 (17%)
Query: 820 RRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRR 879
R R R KE K + G GRR G +E K+ RR R
Sbjct: 60 RSRWRHMKEAKSMGRHEGAGRRE--GTREARMPSKELWM----------------RRLRI 101
Query: 880 RRRSGKEEEEKKK-----------KEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRR--- 925
RR ++ E+KK K G R +R + + +++ R+ +
Sbjct: 102 LRRLLRKYREEKKIDRHIYRELYVKAKGNVFRNKRNLMEHIHKVKNEKKKERQLAEQLAA 161
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK 985
+R + + R + R++ R+R + R R RR K+K KK KK K
Sbjct: 162 KRLKDEQHRHKARKQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAPSGKKSAKAAA 221
Query: 986 EEK 988
K
Sbjct: 222 PAK 224
Score = 33.0 bits (74), Expect = 0.74
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 5/116 (4%)
Query: 818 GRRR-RRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRR 876
GRR R + K+ W RR RR K EEKK + E K + G R
Sbjct: 79 GRREGTREARMPSKELWMRRLRILRRLLRKYREEKKIDRHIYRELYVKAK----GNVFRN 134
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
+R + + +KKKE + ++ + R ++R++ R+R + R R RR
Sbjct: 135 KRNLMEHIHKVKNEKKKERQLAEQLAAKRLKDEQHRHKARKQELRKREKDRERARR 190
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This family
consists of several bovine specific leukaemia virus
receptors which are thought to function as transmembrane
proteins, although their exact function is unknown.
Length = 561
Score = 45.8 bits (108), Expect = 1e-04
Identities = 42/231 (18%), Positives = 87/231 (37%), Gaps = 25/231 (10%)
Query: 810 IRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKK--------KEEEEEG 861
++L RR R+R + K+E+KK+ K + G RR E ++ EE E
Sbjct: 82 VKLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEMPEN 141
Query: 862 GEKEEEEGGGGGGRRRR-----------------RRRRSGKEEEEKKKKEGGGGRRRRRR 904
+E+ R ++ R+ + + +K + ++ ++
Sbjct: 142 ALPSDEDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKK 201
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
K++ + + R + +++ + + +
Sbjct: 202 PKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDS 261
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+ +E K E E+ KK K KK++++KE+EE+KKKKK + E+
Sbjct: 262 EPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQ 312
Score = 45.1 bits (106), Expect = 2e-04
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 41/137 (29%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE------------EEKKKEEKKKEE 973
RR R+R + +R +++R + +R RRR G E +E EE + +E
Sbjct: 88 RRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENALPSDE 147
Query: 974 EEK--------------------------KKKEGKTKKEEKKKEE---EEEKKKKKKEEE 1004
++K K + +T K +K + E++ KK KK+E+
Sbjct: 148 DDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEK 207
Query: 1005 KEEEEKKEEEEKEEEEK 1021
KE+E+++++++K+E E
Sbjct: 208 KEKEKERDKDKKKEVEG 224
Score = 41.2 bits (96), Expect = 0.003
Identities = 17/123 (13%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 842 RRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRR 901
++ KKE+++K+K+ ++++ E E + S E +E G
Sbjct: 200 KKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLANTVSGTAP 259
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR---RSGKE 958
+ ++ + +++++R+ + ++++++ R ++G
Sbjct: 260 DSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAV 319
Query: 959 EEE 961
EEE
Sbjct: 320 EEE 322
Score = 34.3 bits (78), Expect = 0.35
Identities = 33/220 (15%), Positives = 85/220 (38%), Gaps = 16/220 (7%)
Query: 826 KKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE---------------EGG 870
K EE+++ ++R +R + K+E+EK+ ++ G E +E+ E
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENA 142
Query: 871 GGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
+ + + K + +K R + + ++ ++
Sbjct: 143 LPSDEDDKDPNDPYRALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKP 202
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
+++ ++ + + R + +++ +S ++ E +E
Sbjct: 203 KKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLAN-TVSGTAPDS 261
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E +E K + +E +K + KK+++ KE+EEKK+++
Sbjct: 262 EPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHH 301
Score = 33.5 bits (76), Expect = 0.58
Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Query: 797 TKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKE 856
+K+PE G V + + S+ + + ++ ++K+ +K K K G + +
Sbjct: 184 SKSPEKGDVPAVE-KKSKKPKKKEKKEKEKERDKDKKKEVEGFKSLLLALDDSPASAASV 242
Query: 857 EEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSR 916
E + G + + EE +K K +++K+R+ ++ +
Sbjct: 243 AEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKH-------KKKKQRKEKEEKKKK 295
Query: 917 RRRRRRRRRRRRRR 930
++ R
Sbjct: 296 KKHHHHRCHHSDGG 309
>gnl|CDD|236779 PRK10864, PRK10864, putative methyltransferase; Provisional.
Length = 346
Score = 45.2 bits (107), Expect = 1e-04
Identities = 15/62 (24%), Positives = 22/62 (35%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
KR + R R + R RR R R + R R+ R S +E +K
Sbjct: 25 KRTHNPRTGKGGGRPSGKSRADGGRRPARDDRNSQSRDRKWEDSPWRTVSRAPGDETPEK 84
Query: 966 KE 967
+
Sbjct: 85 AD 86
Score = 45.2 bits (107), Expect = 1e-04
Identities = 13/64 (20%), Positives = 23/64 (35%)
Query: 882 RSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
+SGK + + + +R + + R + R RR R R + R R+
Sbjct: 8 KSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPSGKSRADGGRRPARDDRNSQSRDRKWED 67
Query: 942 RRRR 945
R
Sbjct: 68 SPWR 71
Score = 44.0 bits (104), Expect = 3e-04
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
S +R R + R + R RR R R + R R+ S
Sbjct: 23 SDKRTHNPRTGKGGGRPSGKSRADGGRRPARDDRNSQSRDRKWEDS 68
Score = 43.6 bits (103), Expect = 4e-04
Identities = 13/62 (20%), Positives = 19/62 (30%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
+R R R + R RR R R + R R+ R R E+
Sbjct: 25 KRTHNPRTGKGGGRPSGKSRADGGRRPARDDRNSQSRDRKWEDSPWRTVSRAPGDETPEK 84
Query: 961 EE 962
+
Sbjct: 85 AD 86
Score = 42.8 bits (101), Expect = 7e-04
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
RS +R R + R + R RR R R + R R ++
Sbjct: 18 RSDDDSDKRTHNPRTGKGGGRPSGKSRADGGRRPARDDRNSQSRDRKWED 67
Score = 42.1 bits (99), Expect = 0.001
Identities = 13/62 (20%), Positives = 22/62 (35%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
+R R + R + R RR R R + R R+ R + +E +K
Sbjct: 25 KRTHNPRTGKGGGRPSGKSRADGGRRPARDDRNSQSRDRKWEDSPWRTVSRAPGDETPEK 84
Query: 967 EE 968
+
Sbjct: 85 AD 86
Score = 42.1 bits (99), Expect = 0.001
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
S +R R + R + R RR R R + R E+
Sbjct: 23 SDKRTHNPRTGKGGGRPSGKSRADGGRRPARDDRNSQSRDRKWED 67
Score = 42.1 bits (99), Expect = 0.001
Identities = 11/47 (23%), Positives = 17/47 (36%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
+R + + R S + R RR R R + R R+ R
Sbjct: 25 KRTHNPRTGKGGGRPSGKSRADGGRRPARDDRNSQSRDRKWEDSPWR 71
Score = 39.8 bits (93), Expect = 0.006
Identities = 12/60 (20%), Positives = 22/60 (36%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
+R R + R + R RR R R +S + E+ + + +E +K
Sbjct: 25 KRTHNPRTGKGGGRPSGKSRADGGRRPARDDRNSQSRDRKWEDSPWRTVSRAPGDETPEK 84
Score = 38.6 bits (90), Expect = 0.014
Identities = 11/50 (22%), Positives = 18/50 (36%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
RS +R R + R + R RR R R ++ + E+
Sbjct: 18 RSDDDSDKRTHNPRTGKGGGRPSGKSRADGGRRPARDDRNSQSRDRKWED 67
Score = 38.2 bits (89), Expect = 0.019
Identities = 13/54 (24%), Positives = 18/54 (33%)
Query: 881 RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
R ++ G G R K R RR +R R + R R+ R
Sbjct: 18 RSDDDSDKRTHNPRTGKGGGRPSGKSRADGGRRPARDDRNSQSRDRKWEDSPWR 71
Score = 35.1 bits (81), Expect = 0.17
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRR 926
+R R+GK + G R R+ R R +SR R+ R
Sbjct: 25 KRTHNPRTGKG----GGRPSGKSRADGGRRPARDDRNSQSRDRKWEDSPWR 71
Score = 32.4 bits (74), Expect = 1.3
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 14/68 (20%)
Query: 854 KKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRR 913
+ +++ + G GGG + R GGRR R + +SR R
Sbjct: 18 RSDDDSDKRTHNPRTGKGGGRPSGKSRAD--------------GGRRPARDDRNSQSRDR 63
Query: 914 RSRRRRRR 921
+ R
Sbjct: 64 KWEDSPWR 71
>gnl|CDD|216553 pfam01528, Herpes_glycop, Herpesvirus glycoprotein M. The
herpesvirus glycoprotein M (gM) is an integral membrane
protein predicted to contain 8 transmembrane segments.
Glycoprotein M is not essential for viral replication.
Length = 374
Score = 44.9 bits (107), Expect = 2e-04
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
R+ RRR R R R + +RRRR + + S EE+
Sbjct: 326 RAYLYHRRRSTRYYALVRTVRETVKSYKRRRRSKLSQASESSILREEDS 374
Score = 41.9 bits (99), Expect = 0.001
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
R RRR R R R + +RRRR + + +EE+
Sbjct: 326 RAYLYHRRRSTRYYALVRTVRETVKSYKRRRRSKLSQASESSILREEDS 374
Score = 39.2 bits (92), Expect = 0.009
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
RRR R R R + +RRRR + + S EE+
Sbjct: 328 YLYHRRRSTRYYALVRTVRETVKSYKRRRRSKLSQASESSILREEDS 374
Score = 35.7 bits (83), Expect = 0.11
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
R ++R R R + +RRRR + + R
Sbjct: 326 RAYLYHRRRSTRYYALVRTVRETVKSYKRRRRSKLSQASESSILR 370
Score = 34.1 bits (79), Expect = 0.32
Identities = 11/45 (24%), Positives = 15/45 (33%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
R RR R R R + +RRRR + + R
Sbjct: 326 RAYLYHRRRSTRYYALVRTVRETVKSYKRRRRSKLSQASESSILR 370
Score = 34.1 bits (79), Expect = 0.39
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
RRR +R R R + +RRRR + + R
Sbjct: 328 YLYHRRRSTRYYALVRTVRETVKSYKRRRRSKLSQASESSILR 370
Score = 33.8 bits (78), Expect = 0.41
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R R R R R + +RRRR + + R
Sbjct: 329 LYHRRRSTRYYALVRTVRETVKSYKRRRRSKLSQASESSILR 370
Score = 33.8 bits (78), Expect = 0.53
Identities = 13/45 (28%), Positives = 18/45 (40%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
R RRRS R + R R + +RRRR + + R
Sbjct: 326 RAYLYHRRRSTRYYALVRTVRETVKSYKRRRRSKLSQASESSILR 370
Score = 32.2 bits (74), Expect = 1.6
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
R +RR +R R R + +RRRR + + R
Sbjct: 326 RAYLYHRRRSTRYYALVRTVRETVKSYKRRRRSKLSQASESSILR 370
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 44.7 bits (106), Expect = 2e-04
Identities = 18/65 (27%), Positives = 38/65 (58%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
KE EE+ K + K++KK+++ E KKK ++++K+++EKKE + + E + +
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFK 94
Query: 1025 RIRRK 1029
++
Sbjct: 95 TPKKS 99
Score = 44.7 bits (106), Expect = 2e-04
Identities = 20/66 (30%), Positives = 35/66 (53%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+E +EE K KK + + K E KK+ E++KKKKK+++E + E + + K
Sbjct: 35 SKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFK 94
Query: 1017 EEEEKK 1022
++ K
Sbjct: 95 TPKKSK 100
Score = 43.2 bits (102), Expect = 6e-04
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEG---KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
K+ EEE K K KKE+K E +++ +KKKK++++++E K E
Sbjct: 28 YSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEG 87
Query: 1014 EEKEEEEKKRR 1024
E K + ++
Sbjct: 88 ETKLGFKTPKK 98
Score = 42.8 bits (101), Expect = 8e-04
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EEE K K K KKE K + +KK E++++KKK+KKE + E E K +
Sbjct: 41 TFSEEENKVATTSTK----KDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTP 96
Query: 1017 EEEEKK 1022
++ +K
Sbjct: 97 KKSKKT 102
Score = 42.8 bits (101), Expect = 9e-04
Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK-KEEEKEEEEKKEEE 1014
E +++ +K++KKK+E+++ K EG+TK K ++ ++ KKK K + E+ + +
Sbjct: 62 KNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNK 121
Query: 1015 EKEEEEKKRRRI 1026
E EK I
Sbjct: 122 IAELAEKSNVYI 133
Score = 40.9 bits (96), Expect = 0.003
Identities = 18/73 (24%), Positives = 40/73 (54%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
KE++ E KK+ +KK++++K+KKE K++ E K + +K KK K++ + + ++ +
Sbjct: 59 KEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNA 118
Query: 1017 EEEEKKRRRIRRK 1029
+ +
Sbjct: 119 FNKIAELAEKSNV 131
Score = 40.5 bits (95), Expect = 0.004
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K++++E+K E KKK E++KKKK K KKE K + E + K K+ +K +++ + +
Sbjct: 55 KKDKKEDKNNESKKKSEKKKKKK--KEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPN 112
Query: 1017 EEEEKKRRRIRRKR 1030
E+ + +I
Sbjct: 113 EDVDNAFNKIAELA 126
Score = 38.9 bits (91), Expect = 0.014
Identities = 21/73 (28%), Positives = 41/73 (56%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+++E++ + +KK E+++KKKKE K K E + + + KK K+ +K+ + K E+
Sbjct: 56 KDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDV 115
Query: 1017 EEEEKKRRRIRRK 1029
+ K + K
Sbjct: 116 DNAFNKIAELAEK 128
Score = 37.8 bits (88), Expect = 0.029
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
SG ++ + + K+ T EE+ K KK KKE++ E +KK E+
Sbjct: 13 SGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEK 72
Query: 1015 EKEEEEKKR 1023
+K+++++K+
Sbjct: 73 KKKKKKEKK 81
Score = 37.4 bits (87), Expect = 0.037
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
++ + + KE + E++ + KK K+E+K E KK+ E+K+++
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Query: 1020 EKKRR 1024
+K+++
Sbjct: 77 KKEKK 81
Score = 35.8 bits (83), Expect = 0.12
Identities = 14/65 (21%), Positives = 31/65 (47%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+K + + +K+ EEE K ++ ++E+K E +K+ E+KK++
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK 76
Query: 1025 RIRRK 1029
+ +K
Sbjct: 77 KKEKK 81
Score = 35.1 bits (81), Expect = 0.18
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EEE K ++++K+ K ++KK+ +KK+++ KK+K+E K E E K +
Sbjct: 40 STFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKK----KKEKKEPKSEGETKLGFKT 95
Query: 1017 EEEEKKRRRIRRK 1029
++ KK ++ K
Sbjct: 96 PKKSKKTKKKPPK 108
Score = 30.1 bits (68), Expect = 6.4
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
++ K++E++E K E + K + KK KTKK K K K E + +
Sbjct: 72 KKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKK----------KPPKPKPNEDVDNAFNK 121
Query: 1013 EEEKEEEEKK 1022
E E+
Sbjct: 122 IAELAEKSNV 131
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits in
yeasts and in human cells. Twelve of these are akin to
RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34
and Rpc82 form a cluster of enzyme-specific subunits that
contribute to transcription initiation in S.cerevisiae
and H.sapiens. There is evidence that these subunits are
anchored at or near the N-terminal Zn-fold of Rpc1,
itself prolonged by a highly conserved but RNA polymerase
III-specific domain.
Length = 221
Score = 43.6 bits (103), Expect = 2e-04
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+ +R+ G EEEE E+ E++ K+ E E+ +E+ +K +EEE+EEEE
Sbjct: 134 KFKRKVGLFTEEEEDIDEKLSMLEKKLKELEA---------EDVDEEDEKDEEEEEEEEE 184
Query: 1010 KKEEEEKEEEE 1020
+ E+ + ++++
Sbjct: 185 EDEDFDDDDDD 195
Score = 39.7 bits (93), Expect = 0.004
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKE------EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
K+ KK K K++ E EK E++ K+ + E+ EE+EK EEEE+E
Sbjct: 122 INKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEE 181
Query: 1018 EEE 1020
EEE
Sbjct: 182 EEE 184
Score = 36.7 bits (85), Expect = 0.035
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 946 RRRRRRRRRSGKEEEEEEK--KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
+ +R+ + +EE+ +EK E+K KE E + E K EE+++EEEEE +E
Sbjct: 134 KFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE------DE 187
Query: 1004 EKEEEEKKEE 1013
+ ++++ ++
Sbjct: 188 DFDDDDDDDD 197
Score = 31.3 bits (71), Expect = 2.3
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
++ KK K + EEE+ +K E++ K+ E E +EE +
Sbjct: 121 GINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDE 173
Score = 30.5 bits (69), Expect = 3.9
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
++ K+ K K +K EEEE+ +K EK+ +E + E+ EE+EK
Sbjct: 121 GINKKAGKKLALSKFK----RKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKD 175
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 44.7 bits (105), Expect = 3e-04
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE--EKKKEEEEEKKK 998
R +R ++ S EE E E ++E KK +T+++ + EEEK +
Sbjct: 75 RSVKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTE 134
Query: 999 KKKEEEKEEEEKKEEEEKEEEEK 1021
KK + ++ ++ E+ E + E
Sbjct: 135 KKVRKRRKVKKMDEDVEDQGSES 157
Score = 42.3 bits (99), Expect = 0.001
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
++ RR RR+ + + EEEK E+K +K K KK ++ E++ + +
Sbjct: 111 KKTPRRTRRKAAAASSDVEEEKT--------EKKVRKRRKVKKMDEDVEDQGSESEVSDV 162
Query: 1003 EEKEEEEKKEEEEKEEEE 1020
EE E E E +EE +
Sbjct: 163 EESEFVTSLENESEEELD 180
Score = 41.2 bits (96), Expect = 0.003
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE------------- 993
R++ +EE +E KKK K+ KT E + EE
Sbjct: 48 SRKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALD 107
Query: 994 -EEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E KK ++ K + EE++ E+K R+R + K+
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKK 145
Score = 38.5 bits (89), Expect = 0.017
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 11/86 (12%)
Query: 826 KKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRR--- 882
KKK R +R K E + EE E E+ + RR RR
Sbjct: 66 GAVSKKKPTRS---VKRATKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAA 122
Query: 883 --SGKEEEEKKKKEGGGGRRRRRRKK 906
S EEEK +K+ R+RR+ KK
Sbjct: 123 AASSDVEEEKTEKK---VRKRRKVKK 145
Score = 30.4 bits (68), Expect = 6.2
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 793 TKQLTKAPEGGKVCITQI------RLSRNRRGRRRRRRKKK-------EEKKKWKRRGGG 839
TK+ +++ L + + RR R+K EE+K K+
Sbjct: 81 TKKTVVEISEPLEEGSELVVNEDAALDKESKKTPRRTRRKAAAASSDVEEEKTEKKV--- 137
Query: 840 RRRRRGKKEEEKKKKKEEEEEGGEKEEEE 868
R+RR+ KK +E + + E E + EE E
Sbjct: 138 RKRRKVKKMDEDVEDQGSESEVSDVEESE 166
Score = 30.0 bits (67), Expect = 7.4
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 19/98 (19%)
Query: 852 KKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGG------------- 898
+KK E ++E +E G ++ R + ++ + E
Sbjct: 48 SRKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALD 107
Query: 899 ------RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
RR RRK S + ++ R+RR+ ++
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKK 145
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 43.3 bits (102), Expect = 3e-04
Identities = 19/79 (24%), Positives = 44/79 (55%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
R++S E + K++EK++ E+ +K KE + KK+E+K+ +E+K+ +
Sbjct: 152 RKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGL 211
Query: 1012 EEEEKEEEEKKRRRIRRKR 1030
+++ +EK+++ +R
Sbjct: 212 STKDEPPKEKRQKHHDPER 230
Score = 39.9 bits (93), Expect = 0.003
Identities = 21/80 (26%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK---KKKEGKTKKEEKKKEEE-- 993
R+R +++ +RR S K +E+ KK+EEK++ +E+K + ++E
Sbjct: 159 HRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPP 218
Query: 994 EEKKKKKKEEEKEEEEKKEE 1013
+EK++K + E+ E + E
Sbjct: 219 KEKRQKHHDPERRLEPQSHE 238
Score = 39.9 bits (93), Expect = 0.004
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 812 LSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGG 871
LSR + R+R K+++K+ R K +E+++KK+EE+ E + GGG
Sbjct: 150 LSRKKSDDEHRKRSGKQKEKR-------RVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGG 202
Query: 872 GGGRRRRRRRRSGKEEEEKKKKEGGGGRR 900
G + + +EK++K RR
Sbjct: 203 GSSGGQSGLSTKDEPPKEKRQKHHDPERR 231
Score = 35.6 bits (82), Expect = 0.078
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 12/132 (9%)
Query: 796 LTKAPEGGKVCITQIRLS--------RNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKK 847
LT + E GK+ +T + S RN + + +KE + +++ R+R K
Sbjct: 106 LTVSHENGKLQVTYVTHSKVAHEAEIRNLGDVKNAEKFEKECRALSRKKSDDEHRKRSGK 165
Query: 848 EEEKKK----KKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRR 903
++EK++ +K +E+ ++EE+ R SG + K E +R++
Sbjct: 166 QKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKEKRQKH 225
Query: 904 RKKRRRSRRRRS 915
RR +
Sbjct: 226 HDPERRLEPQSH 237
Score = 35.6 bits (82), Expect = 0.093
Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEE-- 973
R+R +++ +RR ++ + RR+++ +RR +R G + K+E
Sbjct: 159 HRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPP 218
Query: 974 EEKKKKEGKTKKEEKKKEEE 993
+EK++K ++ + + E
Sbjct: 219 KEKRQKHHDPERRLEPQSHE 238
Score = 34.5 bits (79), Expect = 0.22
Identities = 14/83 (16%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
R+R +++ +RR ++ + RR+++ +RR+ E++ + +
Sbjct: 159 HRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRND---EDKRPGGGGGSSGGQSGLSTKD 215
Query: 982 KTKKEEKKKEEEEEKKKKKKEEE 1004
+ KE+++K + E++ + + E
Sbjct: 216 EPPKEKRQKHHDPERRLEPQSHE 238
Score = 33.7 bits (77), Expect = 0.39
Identities = 16/91 (17%), Positives = 40/91 (43%)
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
KE +K+ R+R K++ + R S++ + RR+++ +RR +R
Sbjct: 145 KECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGS 204
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
+ + +E+ +K + +++ E +
Sbjct: 205 SGGQSGLSTKDEPPKEKRQKHHDPERRLEPQ 235
Score = 33.3 bits (76), Expect = 0.45
Identities = 14/79 (17%), Positives = 34/79 (43%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R+R +++ +RR ++ + RR+++ +RR + + ++E
Sbjct: 159 HRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPP 218
Query: 977 KKKEGKTKKEEKKKEEEEE 995
K+K K E++ E +
Sbjct: 219 KEKRQKHHDPERRLEPQSH 237
Score = 32.1 bits (73), Expect = 1.1
Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 889 EKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
+KK + +R ++K++RR + + RR+++ +RR +R +
Sbjct: 151 SRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSG 210
Query: 949 RRRRRRSGKEEEE---EEKKKEEKKKEE 973
+ KE+ + + +++ E + E
Sbjct: 211 LSTKDEPPKEKRQKHHDPERRLEPQSHE 238
Score = 31.4 bits (71), Expect = 1.8
Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 850 EKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSG---KEEEEKKK--KEGGGGRRRRRR 904
+K +KE +K ++E G+++ +RR +E+ +KK ++ +R
Sbjct: 140 AEKFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPG 199
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
S + + + +R++ RR
Sbjct: 200 GGGGSSGGQSGLSTKDEPPKEKRQKHHDPERR 231
Score = 31.4 bits (71), Expect = 2.0
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
RKK R+RS +++ +RR ++ + RR+++ +RR +R G +
Sbjct: 152 RKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQ-EEKRRNDEDKRPGGGGGSSGGQSG 210
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKE 991
+++ +E+ +K + + + E + E
Sbjct: 211 LSTKDEPPKEKRQKHHDPERRLEPQSHE 238
Score = 30.6 bits (69), Expect = 3.6
Identities = 13/83 (15%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
R+RSGK++E+++ ++ ++ + +++++ +RR+ +R + +
Sbjct: 159 HRKRSGKQKEKRRVED---SQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKD 215
Query: 939 RRRRRRRRRRRRRRRRSGKEEEE 961
+ +R++ RR + E
Sbjct: 216 EPPKEKRQKHHDPERRLEPQSHE 238
Score = 29.8 bits (67), Expect = 6.6
Identities = 16/95 (16%), Positives = 39/95 (41%)
Query: 886 EEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
E+E + R+R +++ +RR ++ + RR+++ +RR +R
Sbjct: 144 EKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGG 203
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
+ + E +E+++K + E + E
Sbjct: 204 SSGGQSGLSTKDEPPKEKRQKHHDPERRLEPQSHE 238
>gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.
Length = 629
Score = 44.1 bits (104), Expect = 3e-04
Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 860 EGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRR 919
GGE+ G GG RR R SG+ ++EGG G RR +RR R R
Sbjct: 567 TGGERRGGGRGFGGERREGGRNFSGE------RREGGRGDGRRFSGERREGRAPRRDDST 620
Query: 920 RRRRR 924
RRR
Sbjct: 621 GRRRF 625
Score = 43.3 bits (102), Expect = 7e-04
Identities = 21/60 (35%), Positives = 22/60 (36%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
GG RR + RR R RR R RR RR R RR RRR G
Sbjct: 568 GGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGG 627
Score = 42.1 bits (99), Expect = 0.001
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 873 GGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
GG RR R G E ++EGG RR+ R RR S RR R RR R
Sbjct: 568 GGERRGGGRGFGGE-----RREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGR 622
Query: 933 RRR 935
RR
Sbjct: 623 RRF 625
Score = 40.2 bits (94), Expect = 0.006
Identities = 19/59 (32%), Positives = 20/59 (33%)
Query: 894 EGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
GG R R R R+ RR R RR RR R RR RRR
Sbjct: 567 TGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRF 625
Score = 39.8 bits (93), Expect = 0.007
Identities = 18/59 (30%), Positives = 22/59 (37%)
Query: 888 EEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
+++ GG G RR+ R R R RR RR R RR RRR
Sbjct: 567 TGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRF 625
Score = 39.8 bits (93), Expect = 0.009
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
R +R R R R R R R R R R RR RR G +
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQ 487
Score = 37.9 bits (88), Expect = 0.028
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
R +R R R R R R R R R R RR RR + +
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQ 487
Score = 37.9 bits (88), Expect = 0.033
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
R +R R R R R R R R R R RR RR
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481
Score = 37.5 bits (87), Expect = 0.038
Identities = 17/54 (31%), Positives = 18/54 (33%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
+RR R RR R RR R RR RR R RR S
Sbjct: 566 HTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDS 619
Score = 37.1 bits (86), Expect = 0.045
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
R +R R R R R R R R R R RR RR
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481
Score = 37.1 bits (86), Expect = 0.045
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
R +R R R R R R R R R R RR RR
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481
Score = 37.1 bits (86), Expect = 0.053
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
R +R+ R R R R R R R R RR RR
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481
Score = 36.7 bits (85), Expect = 0.062
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
+ +R R R R R R R R R R RR RR
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481
Score = 36.4 bits (84), Expect = 0.086
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
R +R + R R R R R R R R RR RR
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481
Score = 35.6 bits (82), Expect = 0.13
Identities = 15/35 (42%), Positives = 16/35 (45%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
R +R R R R R R R R R R RR RR
Sbjct: 447 RPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481
Score = 35.6 bits (82), Expect = 0.13
Identities = 16/54 (29%), Positives = 16/54 (29%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
RR R RR R RR R RR RR R RR
Sbjct: 566 HTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDS 619
Score = 35.6 bits (82), Expect = 0.14
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
R +R R R R R R R R R RR RR
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481
Score = 34.4 bits (79), Expect = 0.31
Identities = 26/88 (29%), Positives = 30/88 (34%), Gaps = 33/88 (37%)
Query: 835 RRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKE 894
RRGGGR GGE+ E GGR RR G
Sbjct: 571 RRGGGRGF------------------GGERRE------GGRNFSGERREG---------G 597
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRR 922
G GRR ++ R+ RR RRR
Sbjct: 598 RGDGRRFSGERREGRAPRRDDSTGRRRF 625
Score = 34.4 bits (79), Expect = 0.31
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
+R R R R R R R R R R RR RR
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481
Score = 34.4 bits (79), Expect = 0.35
Identities = 14/36 (38%), Positives = 15/36 (41%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
+R R R R R R R R R R RR RR
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERR 481
Score = 34.4 bits (79), Expect = 0.35
Identities = 16/57 (28%), Positives = 19/57 (33%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
G + ++R R RR R RR R RR RR R RR
Sbjct: 561 GDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRD 617
Score = 32.1 bits (73), Expect = 1.8
Identities = 14/53 (26%), Positives = 17/53 (32%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
RR R RR R RR R RR RR R +++
Sbjct: 566 HTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDD 618
Score = 31.7 bits (72), Expect = 2.0
Identities = 14/59 (23%), Positives = 21/59 (35%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
RR R RR R RR R RR RR R+ + ++ +++
Sbjct: 566 HTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR 624
Score = 30.6 bits (69), Expect = 6.0
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
R +R R R R R R R R +E+ ++++
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRD 482
Score = 30.2 bits (68), Expect = 7.8
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
R +R R R R R R R + + E+ ++E + + +
Sbjct: 446 MRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQ 487
>gnl|CDD|112952 pfam04162, Gyro_capsid, Gyrovirus capsid protein (VP1).
Gyroviruses are small circular single stranded viruses.
This family includes the VP1 protein from the chicken
anaemia virus which is the viral capsid protein.
Length = 449
Score = 44.0 bits (103), Expect = 3e-04
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
RR+RR R R RR R +R RRR + R RRR+R RRR R+
Sbjct: 3 RRARRPRGRFYAFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAFRK 47
Score = 42.1 bits (98), Expect = 0.001
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
RR RR + R RR R +R RRR + R RRR+R RRR R+
Sbjct: 3 RRARRPRGRFYAFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAFRK 47
Score = 42.1 bits (98), Expect = 0.001
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
RR +R R R RR R +R RRR + R RRR+R RRR R+
Sbjct: 3 RRARRPRGRFYAFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAFRK 47
Score = 41.7 bits (97), Expect = 0.002
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RR+RR R R RR R +R RRR + R RRR+R RRR
Sbjct: 3 RRARRPRGRFYAFRRGRWHHLKRLRRRYKFRHRRRQRYRRR 43
Score = 40.9 bits (95), Expect = 0.003
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R RR R R RR R +R RRR + R RRR+R RRR R++
Sbjct: 4 RARRPRGRFYAFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAFRKA 48
Score = 39.8 bits (92), Expect = 0.008
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
RR RR + R + RR +R RRR + R RRR+R RRR R+
Sbjct: 2 ARRARRPRGRFYAFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAFRK 47
Score = 39.4 bits (91), Expect = 0.010
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
+RR R R R RR R +R RRR + R RRR+R RRR R
Sbjct: 2 ARRARRPRGRFYAFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAFR 46
Score = 39.0 bits (90), Expect = 0.012
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 918 RRRRRRRRR----RRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
RR RR R R RR R +R RRR + R RRR+R RRR+
Sbjct: 3 RRARRPRGRFYAFRRGRWHHLKRLRRRYKFRHRRRQRYRRRA 44
Score = 39.0 bits (90), Expect = 0.013
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
RR R+ R R R R +R RRR + R RRR+R RRR R+
Sbjct: 3 RRARRPRGRFYAFRRGRWHHLKRLRRRYKFRHRRRQRYRRRAFRK 47
>gnl|CDD|223747 COG0675, COG0675, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 364
Score = 43.9 bits (103), Expect = 3e-04
Identities = 31/166 (18%), Positives = 58/166 (34%), Gaps = 22/166 (13%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGG 870
+ + +++R K ++ KR G + R + K K + +
Sbjct: 84 NFFKGLKSKKKRGFPKFKKPSFKKRNGRLKLSLRKVIIKLPKFKGGIRILKLRLDPKGKK 143
Query: 871 GGGGRRRRRRRRS-------GKEEEEKKKKEG---------------GGGRRRRRRKKRR 908
G R R+ R EEEE K G + R
Sbjct: 144 GKKVVRLRKSRGKYYLSVLVEVEEEEPVPKPGKVVGIDLGLKNLATVSDNGTVPIPRDGR 203
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
+ +R + ++R R++ R +RR++ + + R R R R RR+ +
Sbjct: 204 KLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRRKDFHK 249
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 44.1 bits (104), Expect = 4e-04
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E + KK + KK+ ++ KKKE K ++ +EE E + + K EE E++ EEEE + E
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSE 202
Query: 1021 K 1021
Sbjct: 203 D 203
Score = 38.3 bits (89), Expect = 0.022
Identities = 14/66 (21%), Positives = 34/66 (51%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
KE E+E+K++E ++ E E ++ K + + E + ++K + + EKK+ ++
Sbjct: 331 KKEREKEQKEREGRQSEWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKK 390
Query: 1016 KEEEEK 1021
++
Sbjct: 391 PSVDKP 396
Score = 36.4 bits (84), Expect = 0.081
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 20/116 (17%)
Query: 903 RRKKRRRSRRRRS--------------RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
+RK RR R R++ + R + ++ R R+ R+ +R + R
Sbjct: 305 KRKNRRGQRARQAIWEKKYGSGAKHVKKEREKEQKEREGRQSEWEARQAKREGGDAKAGR 364
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK------EGKTKKEEKKKEEEEEKKK 998
S +++ + K+ EKKK ++ K E K K +EKK + + KK
Sbjct: 365 AAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPLHPSWEAKKKAKEKKANAKFQGKK 420
Score = 35.2 bits (81), Expect = 0.19
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
+ R + ++ R R+ R K E + K + ++K + K+ EKKK ++
Sbjct: 332 KEREKEQKEREGRQSEWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKP 391
Query: 995 ----------EKKKKKKEEEK 1005
E KKK KE++
Sbjct: 392 SVDKPLHPSWEAKKKAKEKKA 412
Score = 34.0 bits (78), Expect = 0.40
Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKK----------------KKEGKTKKEEKKKEEEEEKKK 998
SG E+E+++ + + + ++ KK G K KK+ E+E+K++
Sbjct: 282 SGSEDEDDDDEDIDPDQVVKKPVKRKNRRGQRARQAIWEKKYGSGAKHVKKEREKEQKER 341
Query: 999 KKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+ ++ E E + K E + + +
Sbjct: 342 EGRQSEWEARQAKREGGDAKAGRAAEPTGSR 372
Score = 34.0 bits (78), Expect = 0.40
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E K K+ + KKK + KKE K+ +++++++ + E+E + EE E++ +EEE+
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEED 198
Score = 32.9 bits (75), Expect = 0.96
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
K +K K +++ KK KKKE ++ ++ EEE + E+E K
Sbjct: 144 TKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSE 184
Score = 32.9 bits (75), Expect = 1.0
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
E K + + KK + +++ KK KK+E KE +K +EEE E E++ +
Sbjct: 133 MEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEE 185
Score = 32.1 bits (73), Expect = 1.5
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
R S + E E K + K + K++ KK +++E K+ ++++EE E
Sbjct: 117 SRLLNSKPVKNVLESIMEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESE 176
Query: 1010 KKEEEEKEEEEK 1021
++E + EE +
Sbjct: 177 SEDESKSEESAE 188
Score = 31.7 bits (72), Expect = 2.4
Identities = 17/81 (20%), Positives = 38/81 (46%)
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+ R + ++ R R + E + K++ K + +T+++ + + E+KK KK
Sbjct: 332 KEREKEQKEREGRQSEWEARQAKREGGDAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKP 391
Query: 1002 EEEKEEEEKKEEEEKEEEEKK 1022
+K E ++K +E+K
Sbjct: 392 SVDKPLHPSWEAKKKAKEKKA 412
Score = 30.2 bits (68), Expect = 6.2
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 815 NRRGRRRRRR-------KKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE 867
NRRG+R R+ + KK + + R R + E ++ K+E + + E
Sbjct: 308 NRRGQRARQAIWEKKYGSGAKHVKKEREKEQKEREGRQSEWEARQAKREGGDAKAGRAAE 367
Query: 868 EGGGGGGRRRRRRRRSGKEEEEKKKKEG 895
G ++ R +R K++ +K +
Sbjct: 368 PTGSRTQQKGDRPKRGEKKKPKKPSVDK 395
Score = 29.8 bits (67), Expect = 8.0
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 6/59 (10%)
Query: 816 RRGRRRRRRKKKEEKKKWKRRGGGR------RRRRGKKEEEKKKKKEEEEEGGEKEEEE 868
G + +K K +KK K + + E++ K +E E+ + EEEE
Sbjct: 139 ILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEE 197
Score = 29.4 bits (66), Expect = 9.9
Identities = 17/88 (19%), Positives = 42/88 (47%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
+ + ++ + +++ ++ KE +E K +E++ E E++ K E + + +EE
Sbjct: 137 DKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEE 196
Query: 993 EEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E+ + + + + +EEE EE
Sbjct: 197 EDSDSEDYSQYDGMLVDSSDEEEGEEAP 224
Score = 29.4 bits (66), Expect = 9.9
Identities = 10/57 (17%), Positives = 25/57 (43%)
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
EE K+ K KK E+++++++ + ++ ++ +R+ RR
Sbjct: 254 EESSPPSKKPKEKKTSSTFLPSLMGGYFSGSEDEDDDDEDIDPDQVVKKPVKRKNRR 310
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 41.6 bits (98), Expect = 4e-04
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 938 RRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK 997
+++++R + + E+E+++ E K+ E KK KE + + K K+EE EK+
Sbjct: 28 ASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKE 87
Query: 998 KKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K+K+E + + E+E E E+KK K
Sbjct: 88 KEKEERFMKALAEAEKERAELEKKKAEAKLMK 119
Score = 39.7 bits (93), Expect = 0.002
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKE--EKKKEEEEEKKKKKKEEEKE----EEEKK 1011
E E K+ E +KK +E+ ++ + K KKE EK+KE+EE K E EKE E++K
Sbjct: 54 ESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKA 113
Query: 1012 EEEEKEEEEK 1021
E + +EE+K
Sbjct: 114 EAKLMKEEKK 123
Score = 38.1 bits (89), Expect = 0.006
Identities = 24/86 (27%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
+++++R S E+ ++E + E K+ EG+ K +EK + ++ + KK++ E+E
Sbjct: 28 ASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKAKEKLRRDKLKAKKEEAEKE 87
Query: 1005 KEEEEKKEEEEKEEEEKKRRRIRRKR 1030
KE+EE+ + E EK+R + +K+
Sbjct: 88 KEKEER-FMKALAEAEKERAELEKKK 112
Score = 37.4 bits (87), Expect = 0.011
Identities = 15/65 (23%), Positives = 43/65 (66%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+R G+++ +E+ ++++ K ++EE +K++ K ++ K E E+++ + ++++ E +
Sbjct: 59 SKRPEGRKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLM 118
Query: 1011 KEEEE 1015
KEE++
Sbjct: 119 KEEKK 123
Score = 35.4 bits (82), Expect = 0.042
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+ RR + ++EE EK+KE++++ + + E + + EKKK E + K++KK
Sbjct: 70 EKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 30.8 bits (70), Expect = 1.6
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
+ RR + + ++ E+E+E++++ K E EK++ E + KK E K +EE+K
Sbjct: 70 EKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
>gnl|CDD|218425 pfam05091, eIF-3_zeta, Eukaryotic translation initiation factor 3
subunit 7 (eIF-3). This family is made up of eukaryotic
translation initiation factor 3 subunit 7 (eIF-3
zeta/eIF3 p66/eIF3d). Eukaryotic initiation factor 3 is
a multi-subunit complex that is required for binding of
mRNA to 40 S ribosomal subunits, stabilisation of
ternary complex binding to 40 S subunits, and
dissociation of 40 and 60 S subunits. These functions
and the complex nature of eIF3 suggest multiple
interactions with many components of the translational
machinery. The gene coding for the protein has been
implicated in cancer in mammals.
Length = 517
Score = 43.8 bits (104), Expect = 4e-04
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
K + G+R+RR K+ R RR + + +R RR +R +R+++R + R RR R
Sbjct: 86 LKARTTKHGKRKRRGKQTRTQRRGQGPQGKRGMTSRRAKRGGQRKQKRFQTGRGGRRGAR 145
Query: 950 RRRRR 954
RR R
Sbjct: 146 HRRLR 150
Score = 39.2 bits (92), Expect = 0.011
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR-RRRRRRRRRRRRRRRRRRRSGK 957
R + K++RR ++ R++RR + + +R RR +R +R+++R + R RR R +
Sbjct: 89 RTTKHGKRKRRGKQTRTQRRGQGPQGKRGMTSRRAKRGGQRKQKRFQTGRGGRRGARHRR 148
Query: 958 EEE 960
E
Sbjct: 149 LRE 151
Score = 38.8 bits (91), Expect = 0.015
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR---RRRRRRRRRRSGK 957
R R K R ++ + +RR ++ R +RR + + +R RR +R R+++R + R G+
Sbjct: 83 RSRLKARTTKHGKRKRRGKQTRTQRRGQGPQGKRGMTSRRAKRGGQRKQKRFQTGRGGR 141
Score = 37.3 bits (87), Expect = 0.039
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 889 EKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
K+K+ G R +RR + + R SRR +R +R+++R + R RR R RR R
Sbjct: 94 GKRKRRGKQTRTQRRGQGPQGKRGMTSRRAKRGGQRKQKRFQTGRGGRRGARHRRLR 150
Score = 37.3 bits (87), Expect = 0.046
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R R K R +R RR ++ R +RR + + +R RR +R +R+++R +
Sbjct: 83 RSRLKARTTKHGKRKRRGKQTRTQRRGQGPQGKRGMTSRRAKRGGQRKQKRFQT 136
Score = 36.1 bits (84), Expect = 0.090
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
R+RR ++ + + + + G RR +R +R+ +R ++ R RR R RR R
Sbjct: 96 RKRRGKQTRTQRRGQGPQGKRGMTSRRAKRGGQRKQKRFQTGRGGRRGARHRRLR 150
Score = 33.8 bits (78), Expect = 0.58
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
+ +R+R GK+ +++ +G G+R ++ +R +R+ +R + R RR R RR
Sbjct: 90 TTKHGKRKRRGKQTRTQRRGQGPQGKRGMTSRRAKRGGQRKQKRFQTGRGGRRGARHRRL 149
Query: 934 R 934
R
Sbjct: 150 R 150
Score = 33.1 bits (76), Expect = 0.91
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
R R R + +R+RR ++ R +RR + + +R RR +R ++
Sbjct: 82 DRSRLKARTTKHGKRKRRGKQTRTQRRGQGPQGKRGMTSRRAKRGGQRK 130
Score = 32.3 bits (74), Expect = 1.5
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R R + R + +R+RR ++ R +RR + + +R RR +R G
Sbjct: 81 DDRSRLKARTTKHGKRKRRGKQTRTQRRGQGPQGKRGMTSRRAKRGG 127
Score = 30.7 bits (70), Expect = 4.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
R R + R + +R+RR ++ R +RR + + +R R K + ++K
Sbjct: 82 DRSRLKARTTKHGKRKRRGKQTRTQRRGQGPQGKRGMTSRRAKRGGQRKQK 132
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 42.3 bits (100), Expect = 4e-04
Identities = 23/76 (30%), Positives = 45/76 (59%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
S KE++ EE EE ++ E+ ++++ + + EE+ + EEE+++ + E + EE + K
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLR 61
Query: 1015 EKEEEEKKRRRIRRKR 1030
+ E E R+R R+R
Sbjct: 62 AQAEFENLRKRTERER 77
Score = 37.3 bits (87), Expect = 0.018
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK---KEEEEEKKKKKKEEEKEEEE 1009
EE EE +K EE++ EEEE +++ +++++ + + EE K K + E E
Sbjct: 9 EEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFEN 68
Query: 1010 KKEEEEKEEEEKKRRRIRR 1028
++ E+E EE K+ I +
Sbjct: 69 LRKRTEREREEAKKYAIEK 87
Score = 36.2 bits (84), Expect = 0.042
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
++E+K ++ + EE +K EEEE ++++ EEE E EE+++E + E + + + +
Sbjct: 1 MSDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYL 60
Query: 1030 R 1030
R
Sbjct: 61 R 61
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A family
of uncharacterized proteins found by clustering human gut
metagenomic sequences.
Length = 379
Score = 43.4 bits (103), Expect = 4e-04
Identities = 22/70 (31%), Positives = 41/70 (58%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+E EEE +++ E++ +E E +K+ + +K+ +K+ ++ KK K EE EE + E E+
Sbjct: 64 EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEE 123
Query: 1017 EEEEKKRRRI 1026
E + R I
Sbjct: 124 PEPPLRPRLI 133
Score = 36.1 bits (84), Expect = 0.083
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 967 EEKKKEEEEKKKKEGKTKKE----EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
EE+ +EE E++ KE + +KE EKK E++ KK KK +++E ++ E + EE +
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEP 126
Query: 1023 RRRIR 1027
R R
Sbjct: 127 PLRPR 131
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 44.0 bits (104), Expect = 4e-04
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKE-EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EK+ E+K + E+ K++ K KKE E++ EE +E+++ KK E ++E ++ + K+E
Sbjct: 521 SALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKE 580
Query: 1019 EEKKRRRIRRKR 1030
E R ++ K+
Sbjct: 581 VESIIRELKEKK 592
Score = 39.4 bits (92), Expect = 0.011
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK----KKKKKEEEK 1005
+ E E+ K++EK K+E E++ +E K ++ KK E E+E K KKE E
Sbjct: 524 EKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVES 583
Query: 1006 EEEEKKEEEEKEEEEKKRRRIRRKR 1030
E KE++ + +E K K
Sbjct: 584 IIRELKEKKIHKAKEIKSIEDLVKL 608
Score = 34.8 bits (80), Expect = 0.27
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK---KKKKEEEKEEEEKKEEEE 1015
E +EE +K EK+ ++ E+ KE+E+ KK ++ +E ++ E KK E E
Sbjct: 508 EFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELE 567
Query: 1016 KEEEEK 1021
KE +E
Sbjct: 568 KEAQEA 573
Score = 33.3 bits (76), Expect = 0.82
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 952 RRRSGKEEEEEEKKKEEKK-KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R R+ K E E+E ++ K K+E E +E K KK K KE + + K +E K++ +
Sbjct: 558 RERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQ 617
Query: 1011 KEEEEKEEEEKKRRRIRRK 1029
K + ++ + RIR
Sbjct: 618 KPTNFQADKIGDKVRIRYF 636
Score = 32.1 bits (73), Expect = 1.8
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE-KKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
K E K++ E+ +KE + K E +K +E+EK KK+ E+E EE +++E +
Sbjct: 503 KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNK 562
Query: 1016 KEEEEKKRR 1024
K E EK+ +
Sbjct: 563 KLELEKEAQ 571
Score = 30.6 bits (69), Expect = 5.7
Identities = 19/72 (26%), Positives = 39/72 (54%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+E +E E+ K+ + ++E ++ K K + E +E +E+K K KE + E+ K +E K
Sbjct: 553 EELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETK 612
Query: 1017 EEEEKKRRRIRR 1028
++ +K +
Sbjct: 613 QKIPQKPTNFQA 624
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 42.6 bits (100), Expect = 5e-04
Identities = 28/183 (15%), Positives = 70/183 (38%), Gaps = 40/183 (21%)
Query: 840 RRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGR 899
R+ ++ +EE K++ + E+ ++EE G G + + E+ + +++ G+
Sbjct: 95 RKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGK 154
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
+ S + ++
Sbjct: 155 VHEETEDSYHVEETASEQ---------------------------------------YKQ 175
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE-EKKKKKKEEEKEEEEKKEEEEKEE 1018
+ +EK E++ ++ +E +K +TK E EE+ +++ E+ K +E+ +E EE
Sbjct: 176 DMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEE 235
Query: 1019 EEK 1021
+++
Sbjct: 236 QQE 238
Score = 37.6 bits (87), Expect = 0.019
Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 952 RRRSGKEEEEEEKKKEE---KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE-- 1006
+ E+ +++++ K EE E +T E+ K++ +E+ +++ E+ KE
Sbjct: 134 EDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPV 193
Query: 1007 --EEEKKEEEEKEEEEKKRRR 1025
E K E + EE
Sbjct: 194 EKAERTKAETDDVTEEDYDEE 214
Score = 37.6 bits (87), Expect = 0.021
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE E+ E+ E+ K+ + K ++E + +E +K E K E + EE+ +
Sbjct: 156 HEETEDSYHVEETASEQYKQDMKEKASEQENEDSKE---PVEKAERTKAETDDVTEEDYD 212
Query: 1018 EEEKK 1022
EE+
Sbjct: 213 EEDNP 217
Score = 36.8 bits (85), Expect = 0.033
Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE--KEEEEKK 1011
R K++ EEE K++ + E+ K+ + ++ + +E++ + ++ + E K
Sbjct: 95 RKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGK 154
Query: 1012 EEEEKEEEEKKRRRIR 1027
EE E+
Sbjct: 155 VHEETEDSYHVEETAS 170
Score = 36.8 bits (85), Expect = 0.039
Identities = 14/65 (21%), Positives = 34/65 (52%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
EEE + ++ K+K EEE K++ ++ ++EE+ K+ + ++++ E+ +
Sbjct: 85 HAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSD 144
Query: 1016 KEEEE 1020
+E
Sbjct: 145 DRQET 149
Score = 34.1 bits (78), Expect = 0.25
Identities = 14/78 (17%), Positives = 35/78 (44%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
+ EE E ++E + + K+K E + K++ + E+ K++++ +E
Sbjct: 70 KSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKE 129
Query: 1008 EEKKEEEEKEEEEKKRRR 1025
+ E++ E+ R+
Sbjct: 130 PQLDEDKFLLAEDSDDRQ 147
Score = 34.1 bits (78), Expect = 0.27
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKE-------GKTKKEEKKKEEEEEKKKKKKEEE---KE 1006
KE+ + +K K+EE+ KE ++ ++E E K +E E
Sbjct: 106 KEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHV 165
Query: 1007 EEEKKEEEEKEEEEKKRR 1024
EE E+ +++ +EK
Sbjct: 166 EETASEQYKQDMKEKASE 183
Score = 33.0 bits (75), Expect = 0.61
Identities = 13/73 (17%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 957 KEEEEEEKKKEEK----KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
E+ K+E+ K+ + ++ K +++++ E K ++ E+ EE
Sbjct: 111 SLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETAS 170
Query: 1013 EEEKEEEEKKRRR 1025
E+ K++ ++K
Sbjct: 171 EQYKQDMKEKASE 183
Score = 32.6 bits (74), Expect = 0.82
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
Query: 950 RRRRRSGKEE-EEEEKKKEEK---KKEEEEKKKKEGKTKKEEKKKEEEEEKKKK----KK 1001
R+ ++ +EE +E+ + EK K+EE+ KE + +++ E+ + +++ K
Sbjct: 95 RKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGK 154
Query: 1002 EEEKEEEEKKEEEEKEEEEKKRRR 1025
E+ E+ EE E+ K+ +
Sbjct: 155 VHEETEDSYHVEETASEQYKQDMK 178
Score = 29.5 bits (66), Expect = 9.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E+ + +E + EEE + +K ++K EEE KE+ + E+
Sbjct: 69 EKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEK 115
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein. Genome
duplication is precisely regulated by cyclin-dependent
kinases CDKs, which bring about the onset of S phase by
activating replication origins and then prevent
relicensing of origins until mitosis is completed. The
optimum sequence motif for CDK phosphorylation is
S/T-P-K/R-K/R, and Drc1-Sld2 is found to have at least 11
potential phosphorylation sites. Drc1 is required for DNA
synthesis and S-M replication checkpoint control. Drc1
associates with Cdc2 and is phosphorylated at the onset
of S phase when Cdc2 is activated. Thus Cdc2 promotes DNA
replication by phosphorylating Drc1 and regulating its
association with Cut5. Sld2 and Sld3 represent the
minimal set of S-CDK substrates required for DNA
replication.
Length = 397
Score = 43.6 bits (103), Expect = 5e-04
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
RR +++ ++R RR + R R+ +E + + EE K E +
Sbjct: 281 RRVFKKKGQKRTTRRVKMRPVRAKPSDEPSLPESDI---HEEIPKLDEKSLSEFLGYMGG 337
Query: 993 EEEKKKK-KKEEEKEEEEKKEEEEKEEEEKKRR 1024
+E + EE KEE EKK++ +K+ ++K
Sbjct: 338 IDEDDEDEDDEESKEEVEKKQKVKKKPRKRKVN 370
Score = 42.5 bits (100), Expect = 0.001
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 5/118 (4%)
Query: 821 RRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEG----GGGGGRR 876
RR KKK +K+ RR R R +E + + EE + +E+ G GG
Sbjct: 281 RRVFKKKGQKRT-TRRVKMRPVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGID 339
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
+E +E+ +K+ ++ R+RK S R + R +R++ + R RRRR
Sbjct: 340 EDDEDEDDEESKEEVEKKQKVKKKPRKRKVNPVSNNFRRLKLRNKRKKGFKGRFRRRR 397
Score = 40.5 bits (95), Expect = 0.004
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 822 RRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEG----GGGGGRRR 877
RR KK+ +K+ RR R R +E + + EE + +E+ G GG
Sbjct: 281 RRVFKKKGQKRTTRRVKMRPVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDE 340
Query: 878 RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
+E +E+ +K+ ++ R+RK S RR + R +R++ + R RR
Sbjct: 341 DDEDEDDEESKEEVEKKQKVKKKPRKRK-----VNPVSNNFRRLKLRNKRKKGFKGRFRR 395
Query: 938 RR 939
RR
Sbjct: 396 RR 397
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 43.5 bits (103), Expect = 5e-04
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 921 RRRRRRR------RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEE 974
R R R RRRR RR R RRRRRRR S E EEEE+++EE +EEE
Sbjct: 261 RPRENGRAVTESMRRRRGEMIRRFIDRLPLRRRRRRRPPPSPPEPEEEEEEEEEVPEEEE 320
Query: 975 EKKKKEGKTKKEE 987
E++++E +T +EE
Sbjct: 321 EEEEEEERTFEEE 333
Score = 42.3 bits (100), Expect = 0.001
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 24/88 (27%)
Query: 926 RRRRRRR------RRRRRRRRRR---RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R R R RRRR RR R RRRRRRR E EE+++EE++ EEE
Sbjct: 261 RPRENGRAVTESMRRRRGEMIRRFIDRLPLRRRRRRRPPPSPPEPEEEEEEEEEVPEEE- 319
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
EEEEE++++ EEE
Sbjct: 320 --------------EEEEEEEERTFEEE 333
Score = 41.9 bits (99), Expect = 0.002
Identities = 37/110 (33%), Positives = 44/110 (40%), Gaps = 38/110 (34%)
Query: 923 RRRRRRR------RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R R R RRRR RR R RRRRRRR E EE+
Sbjct: 261 RPRENGRAVTESMRRRRGEMIRRFIDRLPLRRRRRRRPPPSPPEPEEE------------ 308
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
EEEEE E +EEEE++EEEE+ EE+ R +
Sbjct: 309 --------------EEEEE------EVPEEEEEEEEEEERTFEEEVRATV 338
>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.
Length = 456
Score = 43.3 bits (102), Expect = 6e-04
Identities = 14/61 (22%), Positives = 30/61 (49%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
+++ GGGGR + + +++ + RR + + + RR + ++RRRR R
Sbjct: 391 RQQRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPR 450
Query: 951 R 951
+
Sbjct: 451 K 451
Score = 41.3 bits (97), Expect = 0.002
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
++++ GGG + R +++ RR + + + RR + ++RRRR R
Sbjct: 391 RQQRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPR 450
Query: 950 R 950
+
Sbjct: 451 K 451
Score = 41.3 bits (97), Expect = 0.002
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 866 EEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRR 925
++ GGGG G+ R ++ G + + G GG + K + RR + ++R
Sbjct: 392 QQRGGGGRGQGGGRGQQQG------QPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQR 445
Query: 926 RRRRRR 931
RRR R+
Sbjct: 446 RRRPRK 451
Score = 39.4 bits (92), Expect = 0.010
Identities = 15/74 (20%), Positives = 30/74 (40%)
Query: 883 SGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
S K E + ++ GG R + R + + + R + + + RR +
Sbjct: 381 SIKAEPIQNGRQQRGGGGRGQGGGRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPA 440
Query: 943 RRRRRRRRRRRRSG 956
++RRRR R+ +
Sbjct: 441 GEQQRRRRPRKPAA 454
Score = 34.8 bits (80), Expect = 0.24
Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 13/73 (17%)
Query: 835 RRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKE 894
R GGGR + G+ + + + G GG + K
Sbjct: 394 RGGGGRGQGGGRGQ-------------QQGQPRRGEGGAKSASAKPAEKPSRRLGDAKPA 440
Query: 895 GGGGRRRRRRKKR 907
G RRRR RK
Sbjct: 441 GEQQRRRRPRKPA 453
Score = 30.9 bits (70), Expect = 3.7
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 10/78 (12%)
Query: 807 ITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEE 866
I R R GR + R + RRG+ + K E+ +
Sbjct: 387 IQNGRQQRGGGGRGQGG----------GRGQQQGQPRRGEGGAKSASAKPAEKPSRRLGD 436
Query: 867 EEGGGGGGRRRRRRRRSG 884
+ G RRRR R+ +
Sbjct: 437 AKPAGEQQRRRRPRKPAA 454
>gnl|CDD|112890 pfam04094, DUF390, Protein of unknown function (DUF390). This is a
family of long proteins currently only found in the rice
genome. They have no known function. However they may be
some kind of transposable element.
Length = 843
Score = 43.3 bits (101), Expect = 7e-04
Identities = 48/214 (22%), Positives = 73/214 (34%), Gaps = 28/214 (13%)
Query: 837 GGGR---RRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSG-----KEEE 888
GGGR R G + + ++ G GGG R RR G + E
Sbjct: 83 GGGRASGPRDGGPGGSRPADARGKRKQEGTPPPSPPRGGGAVRASSRRPEGAAPTSQPEG 142
Query: 889 EKKKK--------EGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
E+KKK E GG R R S R R RR
Sbjct: 143 ERKKKRFCKMGEPEHAGGNLIRLPGGRFADLPAGSSLRSPRPYSFSHLPRRVFTHPFLFV 202
Query: 941 RRRRRRR-----RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
R R +SG+ E E+ E +++E + ++E + E ++ ++
Sbjct: 203 FWFFFCLSEIPSRPSRHSKSGQSEAEDPAAAEARRREAD---RREAADRLREAEEAAQDA 259
Query: 996 KKKKKKEEEKEEEEKK----EEEEKEEEEKKRRR 1025
+ ++ EE EE + EE +E E R
Sbjct: 260 ARARQAEEAAREEAARARQAEEAAREAEAAFRAD 293
Score = 32.1 bits (72), Expect = 1.9
Identities = 38/197 (19%), Positives = 61/197 (30%), Gaps = 16/197 (8%)
Query: 815 NRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEE----------EKKKKK-----EEEE 859
+R R +RK++ RGGG R ++ E E+KKK+ E E
Sbjct: 98 SRPADARGKRKQEGTPPPSPPRGGGAVRASSRRPEGAAPTSQPEGERKKKRFCKMGEPEH 157
Query: 860 EGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRR-RSRRR 918
GG GG RS + SR
Sbjct: 158 AGGNLIRLPGGRFADLPAGSSLRSPRPYSFSHLPRRVFTHPFLFVFWFFFCLSEIPSRPS 217
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
R + + RRR RR R R ++ ++ EE +EE + +
Sbjct: 218 RHSKSGQSEAEDPAAAEARRREADRREAADRLREAEEAAQDAARARQAEEAAREEAARAR 277
Query: 979 KEGKTKKEEKKKEEEEE 995
+ + +E + +E
Sbjct: 278 QAEEAAREAEAAFRADE 294
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together with
Snu17p and a newly identified factor, Pml1p/Ylr016c, form
a novel trimeric complex. called The RES complex,
pre-mRNA retention and splicing complex. Subunits of this
complex are not essential for viability of yeasts but
they are required for efficient splicing in vitro and in
vivo. Furthermore, inactivation of this complex causes
pre-mRNA leakage from the nucleus. Bud13 contains a
unique, phylogenetically conserved C-terminal region of
unknown function.
Length = 141
Score = 40.8 bits (96), Expect = 7e-04
Identities = 26/73 (35%), Positives = 47/73 (64%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
R K EE+E +K+E+++KEE+EK+ +G +KEE++K EE +K K K + ++
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADD 69
Query: 1010 KKEEEEKEEEEKK 1022
+ +EE +E+E+
Sbjct: 70 EDYDEELKEQERW 82
Score = 38.4 bits (90), Expect = 0.004
Identities = 21/79 (26%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
R +SG+ + EEK++E+++++EE+++K+E +KE K ++E+++K+ EE ++ + K
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEE--KEKEWGKGLVQKEEREKRLEELEKAKNKP 62
Query: 1012 EEEEKEEEEKKRRRIRRKR 1030
++E+ ++R
Sbjct: 63 LARYADDEDYDEELKEQER 81
Score = 36.9 bits (86), Expect = 0.016
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
R +EE+E EK+++E+K+E+E++ K K+E +K+ EE EK K K ++
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADD 69
Query: 1009 EKKEEEEKEEE 1019
E +EE KE+E
Sbjct: 70 EDYDEELKEQE 80
Score = 33.8 bits (78), Expect = 0.16
Identities = 14/77 (18%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
R +R + R + + R+ + + GK ++E++++ ++ E+ K K + +
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADD 69
Query: 987 EKKKEEEEEKKKKKKEE 1003
E + +EE K++++ +
Sbjct: 70 E---DYDEELKEQERWD 83
>gnl|CDD|221041 pfam11241, DUF3043, Protein of unknown function (DUF3043). Some
members in this family of proteins with unknown function
are annotated as membrane proteins. This cannot be
confirmed.
Length = 168
Score = 41.1 bits (97), Expect = 8e-04
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
K R + +RR RRR R+ ++ R RR RR R R
Sbjct: 1 GKGRPTPKRREAEAARRRPLVPEDRKAAKKAARAARRERRARARAA 46
Score = 39.5 bits (93), Expect = 0.003
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
R +RR RRR R+ ++ R RR RR R R+ +E
Sbjct: 4 RPTPKRREAEAARRRPLVPEDRKAAKKAARAARRERRARARAAMMAGDE 52
Score = 39.2 bits (92), Expect = 0.004
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
R + +RR RRR R+ ++ R RR RR R R + +E
Sbjct: 4 RPTPKRREAEAARRRPLVPEDRKAAKKAARAARRERRARARAAMMAGDE 52
Score = 38.8 bits (91), Expect = 0.005
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
G GR +R++ +RRR R+ ++ R RR RR R R
Sbjct: 1 GKGRPTPKRREAEAARRRPLVPEDRKAAKKAARAARRERRARARAA 46
Score = 38.4 bits (90), Expect = 0.007
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
K++E RRR + R++ ++ +R RR RR R R R R R RR
Sbjct: 8 KRREAEAARRRPLVPEDRKAAKKAARAARRERRARARAAMMAGDERYLPPRDRGPVRRYV 67
Query: 951 R 951
R
Sbjct: 68 R 68
Score = 31.8 bits (73), Expect = 1.0
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 872 GGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRR 931
G GR +RR E E ++ R+ KK R+ RR R R R R
Sbjct: 1 GKGRPTPKRR-----EAEAARRRPLVPEDRKAAKKAARAARRERRARARAAMMAGDERYL 55
Query: 932 RRRRRRRRRRRRR 944
R R RR R
Sbjct: 56 PPRDRGPVRRYVR 68
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 42.6 bits (100), Expect = 8e-04
Identities = 25/140 (17%), Positives = 47/140 (33%)
Query: 849 EEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRR 908
E ++K +EE E+ E++ + R E ++ ++ +K
Sbjct: 156 ELRQKIREEREKEKEEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKEE 215
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE 968
R R RRR R+ + R G++ E+ E K E
Sbjct: 216 RRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPES 275
Query: 969 KKKEEEEKKKKEGKTKKEEK 988
E ++ E + K+E+
Sbjct: 276 YITSEYIERISEIRKMKDER 295
Score = 36.0 bits (83), Expect = 0.081
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 11/136 (8%)
Query: 878 RRRRRSGKEEEE-----KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
R R KEE+ K ++ GG + ++ ++ RR
Sbjct: 162 REEREKEKEEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKEERRAAVE 221
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE-KKKKEGKTKKEEKKKE 991
RR RRR R KE+E EE + + E+E + ++G+TK E
Sbjct: 222 RRLAELVEMINWNLEERRRDLR--KEQELEENVERDSDDEDEHGEDSEDGETKPESYITS 279
Query: 992 EEEE---KKKKKKEEE 1004
E E + +K K+E
Sbjct: 280 EYIERISEIRKMKDER 295
Score = 34.1 bits (78), Expect = 0.35
Identities = 14/69 (20%), Positives = 31/69 (44%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
++ KEE ++ + E E + + K++E EE ++ +E++ E+
Sbjct: 206 ETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGED 265
Query: 1010 KKEEEEKEE 1018
++ E K E
Sbjct: 266 SEDGETKPE 274
Score = 32.9 bits (75), Expect = 0.95
Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 6/100 (6%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
R R++ R R + + + + + K E + E+E +E E K++
Sbjct: 155 RELRQKIREEREKEKEEQPMKPAFKPERWMGGPDSD---EDENPLDEEAPDMTPETSKQD 211
Query: 993 EEEKKKK---KKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
++E+++ ++ E E EE+ + +K + +
Sbjct: 212 QKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEEN 251
Score = 32.2 bits (73), Expect = 1.3
Identities = 19/111 (17%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
R R++ R R + + + + + R + +EE + E K++++E
Sbjct: 155 RELRQKIREEREKEKEEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKE 214
Query: 976 KKKKEGKTKKEEKKK-------EEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+++ + + E + E + +K+++ EE E + +E+E E+
Sbjct: 215 ERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGED 265
Score = 31.4 bits (71), Expect = 2.6
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 1/120 (0%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
R R+K R R + + + + R ++E
Sbjct: 155 RELRQKIREEREKEKEEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKE 214
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE-EEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E E + E E + ++ + +KE E EE ++ ++E E E E+ E + E
Sbjct: 215 ERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 30.2 bits (68), Expect = 5.6
Identities = 20/102 (19%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT 983
R R++ R R + + + + + R +E+E EE E K++ K
Sbjct: 155 RELRQKIREEREKEKEEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKE 214
Query: 984 KKEE--KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
++ +++ E + EE+ + +KE+E +E E+
Sbjct: 215 ERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDS 256
Score = 30.2 bits (68), Expect = 6.2
Identities = 18/113 (15%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R R++ R R + + + + + R +EE E K+++++
Sbjct: 155 RELRQKIREEREKEKEEQPMKPAFKPERWMGGPDSDEDENPLDEEAPDMTPETSKQDQKE 214
Query: 977 KKKEGKTKKEEKKKEE---------EEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+++ ++ + E + +K+++ EE E + E+E E+ E
Sbjct: 215 ERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSE 267
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 42.7 bits (101), Expect = 8e-04
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EEEEE ++ ++K+EE K +E + E K+ E++ + + E EKEE KK EE+
Sbjct: 184 AEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKL 243
Query: 1017 EEEEKK 1022
+E ++
Sbjct: 244 RQELER 249
Score = 36.5 bits (85), Expect = 0.063
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK----EEEEKEE 1018
KK E K EEEE+ ++ K K+EE + EEE + + +E E++ E E++E
Sbjct: 176 SKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEEL 235
Query: 1019 EEKKRRRIR 1027
+K ++R
Sbjct: 236 RKKYEEKLR 244
Score = 35.8 bits (83), Expect = 0.12
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
KE+ EE K E++ + K+ K+ + E E+E+ +KK EE+ +E +++ E
Sbjct: 195 KEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAH 254
Query: 1017 EE 1018
E+
Sbjct: 255 EQ 256
Score = 34.6 bits (80), Expect = 0.25
Identities = 17/74 (22%), Positives = 40/74 (54%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+EE + ++E + E ++ E + + E ++++EE KK ++K ++ E + + E+K
Sbjct: 198 REELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQK 257
Query: 1017 EEEEKKRRRIRRKR 1030
+ E + I +R
Sbjct: 258 LKNELALQAIELQR 271
Score = 31.9 bits (73), Expect = 1.7
Identities = 14/66 (21%), Positives = 34/66 (51%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE + +E E++ + + E + ++ KK EE+ ++ +++ E E++ K E +
Sbjct: 207 EELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQA 266
Query: 1018 EEEKKR 1023
E ++
Sbjct: 267 IELQRE 272
Score = 31.5 bits (72), Expect = 2.7
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEK---EEEEKKEEEEKEEEEKKRRRIRRKR 1030
K EE+++ E K+K+++ K E + E +E E++ R R++
Sbjct: 183 KAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREK 232
Score = 30.4 bits (69), Expect = 5.1
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEE-KKKKEGKTKKEEKKKEEEEEKKKKK----KEEEKE 1006
R KE E++ + E ++E+EE +KK E K ++E +++ E E+K K + E +
Sbjct: 211 ARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQ 270
Query: 1007 EEEKKEEEEKEEEEK 1021
E KE +EK EEE+
Sbjct: 271 REFNKEIKEKVEEER 285
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 43.1 bits (102), Expect = 8e-04
Identities = 18/45 (40%), Positives = 35/45 (77%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
K +++EE ++E+++KE +++K+ K KK+E+KK++E EK +K K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 40.0 bits (94), Expect = 0.007
Identities = 12/42 (28%), Positives = 33/42 (78%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
KEE ++E+EE++ K+++ ++ ++++E+++KE E+ ++ +I
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKI 591
Score = 39.6 bits (93), Expect = 0.009
Identities = 17/40 (42%), Positives = 30/40 (75%), Gaps = 1/40 (2%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
KEE ++E+EEK+ + + K+ K K++EE+KKK+ ++ EK
Sbjct: 550 KEELQREKEEKEALK-EQKRLRKLKKQEEKKKKELEKLEK 588
Score = 38.9 bits (91), Expect = 0.014
Identities = 16/53 (30%), Positives = 34/53 (64%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E+K K + + + EK+++E +++K+ ++ +K+EE+KK+E EK E+
Sbjct: 536 EDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 38.1 bits (89), Expect = 0.025
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK---------- 989
+R + + + ++R K +++EEKKK+E +K E+ K K++E K
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAFDETGLP 613
Query: 990 ---KEEEEEKKKKKKEEEKE-EEEKKEEEEKEEEEKK 1022
+ EE KK++K+ KE +++ K EE + K
Sbjct: 614 THDADGEEISKKERKKLSKEYDKQAKLHEEYLAKGGK 650
Score = 36.9 bits (86), Expect = 0.056
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
K+E ++++EE+E K++K K KK+EE+K++E +K +
Sbjct: 550 KEELQREKEEKEALKEQKRLRK---LKKQEEKKKKELEKLEK 588
Score = 36.5 bits (85), Expect = 0.086
Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK--- 976
+R + + + ++R R+ +++ ++++ + ++ E K++E+K +E
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDKYSAFDETGLP 613
Query: 977 -KKKEGK--TKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+G+ +KKE KK +E +K+ K EE + K
Sbjct: 614 THDADGEEISKKERKKLSKEYDKQAKLHEEYLAKGGKS 651
Score = 33.8 bits (78), Expect = 0.50
Identities = 13/42 (30%), Positives = 31/42 (73%)
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K +++EE +++K+E+E +E+K+ + K++EEKK++ + +
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLE 587
Score = 32.7 bits (75), Expect = 1.1
Identities = 11/43 (25%), Positives = 31/43 (72%)
Query: 988 KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K ++EE +++K+++E +E+++ + +K+EE+KK+ + ++
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 31.2 bits (71), Expect = 3.6
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 8/42 (19%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEE 860
+R + K+ +++K R R+ KK+EEKKKK+ E+ E
Sbjct: 554 QREKEEKEALKEQK--------RLRKLKKQEEKKKKELEKLE 587
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 43.2 bits (102), Expect = 8e-04
Identities = 17/56 (30%), Positives = 18/56 (32%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
+KR R R S R RRR R R RRR R R R
Sbjct: 360 ADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPS 415
Score = 42.9 bits (101), Expect = 0.001
Identities = 16/75 (21%), Positives = 18/75 (24%)
Query: 882 RSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
G ++R R R RRR R R RRR
Sbjct: 342 SPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRR 401
Query: 942 RRRRRRRRRRRRRSG 956
R R R S
Sbjct: 402 DATGRFPAGRPRPSP 416
Score = 38.2 bits (89), Expect = 0.028
Identities = 16/52 (30%), Positives = 19/52 (36%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
S R+R R R R RRR R R RRR R +G+
Sbjct: 361 DPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRP 412
Score = 36.7 bits (85), Expect = 0.071
Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 897 GGRRRRRRKKRRRSRRRRS---RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R+R + R + R RRR R R RRR R R R
Sbjct: 362 PSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGA 421
Query: 954 RSG 956
SG
Sbjct: 422 ASG 424
Score = 34.8 bits (80), Expect = 0.30
Identities = 11/44 (25%), Positives = 13/44 (29%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
RS R R+R R R R RRR+
Sbjct: 349 RSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARA 392
Score = 34.0 bits (78), Expect = 0.57
Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
R+R R + R RRR+R + R RRR R R R
Sbjct: 362 PSSPRKRPRP--------SRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPR 413
Query: 934 RR 935
Sbjct: 414 PS 415
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus protein
SURF-6 is shown to be a component of the nucleolar matrix
and has a strong binding capacity for nucleic acids.
Length = 206
Score = 41.5 bits (98), Expect = 8e-04
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 19/114 (16%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE------- 975
+RRR+R +R+ R++++R+ +++ ++ K EE + KKK + E
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSKV 69
Query: 976 --------KKKKEGKTKKEEKKKEEEEE----KKKKKKEEEKEEEEKKEEEEKE 1017
KK + K KK++KK + ++ + +KKK EE +E++ E EEKE
Sbjct: 70 EFADGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKE 123
Score = 34.6 bits (80), Expect = 0.16
Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 42/211 (19%)
Query: 830 KKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEE 889
+++ ++R + R++ K++E KKK+ ++ E E + EE +++ + E E
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKS-------KKKAAPIENAE 61
Query: 890 KK---------KKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
E + ++KK+++ + ++ R+++ +
Sbjct: 62 GNIVFSKVEFADGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKA----- 116
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK-KKKEGKTKKEEKKKEEEEEKKKK 999
E EE+EK + K E K K E KK K+KE K+KK
Sbjct: 117 ----------------AEIEEKEKWTKALAKAEGVKVKDDEKLLKKALKRKE----KQKK 156
Query: 1000 KKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K ++E +E ++K E++K E +KKR +KR
Sbjct: 157 KSKKEWKERKEKVEKKKAERQKKREENLKKR 187
Score = 31.9 bits (73), Expect = 1.0
Identities = 14/60 (23%), Positives = 36/60 (60%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+E E+++++ ++++ +K+K++ KKE+ +K E EE K ++ + +K+ + E
Sbjct: 4 REALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63
Score = 31.5 bits (72), Expect = 1.7
Identities = 41/194 (21%), Positives = 97/194 (50%), Gaps = 11/194 (5%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGG------ 872
+RRR+R++++ +KK KR+ ++ K E E+ K +E + + E G
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGNIVFSKV 69
Query: 873 --GGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
+ ++ K++++KKK + ++ +K++ + + + +
Sbjct: 70 EFADGEQAKKDLKLKKKKKKKKTDYKQLLKKLEARKKKLEELDEDKAAEIEEKEKWTKAL 129
Query: 931 RR---RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE 987
+ + + + ++ +R+ ++++ K+E +E K+K EKKK E +KK++E K+++
Sbjct: 130 AKAEGVKVKDDEKLLKKALKRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKD 189
Query: 988 KKKEEEEEKKKKKK 1001
KK ++++K KKK
Sbjct: 190 DKKNKKKKKAKKKG 203
Score = 30.4 bits (69), Expect = 4.2
Identities = 13/57 (22%), Positives = 32/57 (56%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
++ E++++K + K +K+K +E +KK+ ++ E EE + +E + K++
Sbjct: 1 PSSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPI 57
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 393 and 442 amino
acids in length.
Length = 301
Score = 42.4 bits (100), Expect = 9e-04
Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR-----RRRRRSGKEEEEE 962
R R SRR RR R RR R RR R RR+ E+ +
Sbjct: 170 AREREHSSRRASRRGRSGYSTPSAALSRRGSRSASRRGSRADLSMTPLEARRADAEDSRD 229
Query: 963 E 963
Sbjct: 230 T 230
Score = 41.6 bits (98), Expect = 0.001
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 886 EEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
E+EE ++E R R RR SRR RS RR R RR R
Sbjct: 160 EDEEDFEREA---AREREHSSRRASRRGRSGYSTPSAALSRRGSRSASRRGSR 209
Score = 40.1 bits (94), Expect = 0.005
Identities = 14/42 (33%), Positives = 14/42 (33%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R R R RR RR R RR R RR S
Sbjct: 167 REAAREREHSSRRASRRGRSGYSTPSAALSRRGSRSASRRGS 208
Score = 40.1 bits (94), Expect = 0.005
Identities = 14/44 (31%), Positives = 16/44 (36%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R +R R RR RR R RR R RR R+
Sbjct: 167 REAAREREHSSRRASRRGRSGYSTPSAALSRRGSRSASRRGSRA 210
Score = 39.3 bits (92), Expect = 0.007
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
R ++R S RR SRR R RR R RR R
Sbjct: 167 REAAREREHSSRRASRRGRSGYSTPSAALSRRGSRSASRRGSR 209
Score = 37.8 bits (88), Expect = 0.025
Identities = 13/43 (30%), Positives = 13/43 (30%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R R RR RR R RR R RR R
Sbjct: 167 REAAREREHSSRRASRRGRSGYSTPSAALSRRGSRSASRRGSR 209
Score = 36.6 bits (85), Expect = 0.050
Identities = 12/37 (32%), Positives = 12/37 (32%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R R R RR RR R RR RS
Sbjct: 167 REAAREREHSSRRASRRGRSGYSTPSAALSRRGSRSA 203
Score = 36.6 bits (85), Expect = 0.058
Identities = 12/40 (30%), Positives = 13/40 (32%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
R R RR+ RR RR R RR R
Sbjct: 170 AREREHSSRRASRRGRSGYSTPSAALSRRGSRSASRRGSR 209
Score = 36.2 bits (84), Expect = 0.065
Identities = 13/43 (30%), Positives = 13/43 (30%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
R R R R RR R RR R RR R
Sbjct: 167 REAAREREHSSRRASRRGRSGYSTPSAALSRRGSRSASRRGSR 209
Score = 36.2 bits (84), Expect = 0.066
Identities = 11/39 (28%), Positives = 13/39 (33%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R R R RR RR R RR R + +
Sbjct: 167 REAAREREHSSRRASRRGRSGYSTPSAALSRRGSRSASR 205
Score = 31.2 bits (71), Expect = 2.5
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Query: 899 RRRRRRKKRRRSRRRRS--RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R +R+K RRS + + + + R RR + R+ RRR
Sbjct: 66 RLHKRKKSSRRSPMSDTLLKSKSSAHLLHHQSTRSHRRSKSGTTSPRKPSSSAHRRRNDS 125
Query: 957 K 957
+
Sbjct: 126 E 126
Score = 31.2 bits (71), Expect = 2.6
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 898 GRRRRRRKKRRRSRRRR--------SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
R R KR++S RR S+ + R RR + R+ R
Sbjct: 61 SPSRSRLHKRKKSSRRSPMSDTLLKSKSSAHLLHHQSTRSHRRSKSGTTSPRKPSSSAHR 120
Query: 950 RRR 952
RR
Sbjct: 121 RRN 123
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function of
this family is unknown.
Length = 417
Score = 42.6 bits (99), Expect = 9e-04
Identities = 25/83 (30%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 949 RRRRRRSGKE-EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
R R +SG E E+EE+K ++EK+K E+E + K E++K++ E++K+K ++E+++
Sbjct: 141 RDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKT 200
Query: 1008 EEKKEEEEKEEEEKKRRRIRRKR 1030
+ E E++K++ K+
Sbjct: 201 SNIANKNAIELEQEKQKTENEKQ 223
Score = 35.6 bits (81), Expect = 0.12
Identities = 21/76 (27%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
K E + KK+ E ++ K E ++EE+K E+E++K +K+ E + K E+E
Sbjct: 125 DKKIELAQAKKEAENARDRANKSGIE--LEQEEQKTEQEKQKTEKEGIELANSQIKAEQE 182
Query: 1015 EKEEEEKKRRRIRRKR 1030
+++ E++K++ + K+
Sbjct: 183 KQKTEQEKQKTEQEKQ 198
Score = 34.9 bits (79), Expect = 0.20
Identities = 26/126 (20%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
KK ++ ++ R R + + ++ + +++ + K E+E++K
Sbjct: 126 KKIELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQK 185
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK--KEEEEKEEEEKK 1022
++EK+K E+EK+K K + E+E++K + +K++ +E++ KE E+ +E
Sbjct: 186 TEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKDFIKEAEQNCQENHN 245
Query: 1023 RRRIRR 1028
+ I++
Sbjct: 246 QFFIKK 251
>gnl|CDD|225361 COG2801, Tra5, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 232
Score = 41.9 bits (97), Expect = 0.001
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R ++ K + R ++ RR RR R RR R +R +++R
Sbjct: 4 SRNQQIAKLSKEIVRIRKKLYGSRRLIETLYRRGIRVRRVARLLGVLGLKRLKKKR 59
Score = 39.9 bits (92), Expect = 0.003
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R ++ + R R++ RR RR R RR R +R +++
Sbjct: 3 VSRNQQIAKLSKEIVRIRKKLYGSRRLIETLYRRGIRVRRVARLLGVLGLKRLKKK 58
Score = 39.9 bits (92), Expect = 0.003
Identities = 14/68 (20%), Positives = 25/68 (36%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
+ + K+ R R++ RR RR R RR R +R +++RR+ +
Sbjct: 8 QIAKLSKEIVRIRKKLYGSRRLIETLYRRGIRVRRVARLLGVLGLKRLKKKRRKYIRYEG 67
Query: 959 EEEEEKKK 966
Sbjct: 68 LHSMWNLL 75
Score = 39.6 bits (91), Expect = 0.005
Identities = 13/74 (17%), Positives = 24/74 (32%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
R R ++ + + R R++ RR RR R RR R +R + +
Sbjct: 1 VRVSRNQQIAKLSKEIVRIRKKLYGSRRLIETLYRRGIRVRRVARLLGVLGLKRLKKKRR 60
Query: 959 EEEEEKKKEEKKKE 972
+ +
Sbjct: 61 KYIRYEGLHSMWNL 74
Score = 38.4 bits (88), Expect = 0.012
Identities = 14/74 (18%), Positives = 25/74 (33%)
Query: 881 RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
R + ++ K + R++ RR R R RR R +R +++RR
Sbjct: 1 VRVSRNQQIAKLSKEIVRIRKKLYGSRRLIETLYRRGIRVRRVARLLGVLGLKRLKKKRR 60
Query: 941 RRRRRRRRRRRRRR 954
+ R
Sbjct: 61 KYIRYEGLHSMWNL 74
Score = 36.5 bits (83), Expect = 0.042
Identities = 15/83 (18%), Positives = 26/83 (31%)
Query: 878 RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
R R+ + + K+ + R+ RR R RR R +R +++RR
Sbjct: 1 VRVSRNQQIAKLSKEIVRIRKKLYGSRRLIETLYRRGIRVRRVARLLGVLGLKRLKKKRR 60
Query: 938 RRRRRRRRRRRRRRRRRSGKEEE 960
+ R R
Sbjct: 61 KYIRYEGLHSMWNLLNRDFAASA 83
Score = 35.3 bits (80), Expect = 0.11
Identities = 17/79 (21%), Positives = 28/79 (35%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
R ++ +E + +K+ G RR RR R RR R +R +++RR+
Sbjct: 3 VSRNQQIAKLSKEIVRIRKKLYGSRRLIETLYRRGIRVRRVARLLGVLGLKRLKKKRRKY 62
Query: 935 RRRRRRRRRRRRRRRRRRR 953
R R
Sbjct: 63 IRYEGLHSMWNLLNRDFAA 81
Score = 31.8 bits (71), Expect = 1.4
Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 3/76 (3%)
Query: 910 SRRRRSRRR---RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
R R+++ + R R++ RR RR R RR R + ++K++
Sbjct: 1 VRVSRNQQIAKLSKEIVRIRKKLYGSRRLIETLYRRGIRVRRVARLLGVLGLKRLKKKRR 60
Query: 967 EEKKKEEEEKKKKEGK 982
+ + E
Sbjct: 61 KYIRYEGLHSMWNLLN 76
Score = 31.1 bits (69), Expect = 2.6
Identities = 22/146 (15%), Positives = 35/146 (23%), Gaps = 1/146 (0%)
Query: 810 IRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRR-RRGKKEEEKKKKKEEEEEGGEKEEEE 868
+ + RRG R RR + KR RR+ R + + +
Sbjct: 29 LIETLYRRGIRVRRVARLLGVLGLKRLKKKRRKYIRYEGLHSMWNLLNRDFAASAPNQVW 88
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
G R + + K+ G S RR R
Sbjct: 89 VGDFTYRWILKGGVYLATVIDTFKRIIVGWSEYGSPVAELVRDAGISALARRILHSDRGS 148
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRR 954
+ R R + R+
Sbjct: 149 QYGSLAFREILRELGIKPSLSRKGLP 174
Score = 30.3 bits (67), Expect = 4.4
Identities = 12/76 (15%), Positives = 20/76 (26%)
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
R R++ G + G RR R +R ++RR+ R
Sbjct: 15 EIVRIRKKLYGSRRLIETLYRRGIRVRRVARLLGVLGLKRLKKKRRKYIRYEGLHSMWNL 74
Query: 934 RRRRRRRRRRRRRRRR 949
R +
Sbjct: 75 LNRDFAASAPNQVWVG 90
Score = 29.2 bits (64), Expect = 9.7
Identities = 14/83 (16%), Positives = 23/83 (27%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
R R++ + E + G RR R +R + +RR+ R
Sbjct: 17 VRIRKKLYGSRRLIETLYRRGIRVRRVARLLGVLGLKRLKKKRRKYIRYEGLHSMWNLLN 76
Query: 935 RRRRRRRRRRRRRRRRRRRRSGK 957
R + R K
Sbjct: 77 RDFAASAPNQVWVGDFTYRWILK 99
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral inhibitor
of apoptosis (IAP)-associated factor (VIAF) subfamily;
VIAF is a Phd-like protein that functions in caspase
activation during apoptosis. It was identified as an IAP
binding protein through a screen of a human B-cell
library using a prototype IAP. VIAF lacks a consensus IAP
binding motif and while it does not function as an IAP
antagonist, it still plays a regulatory role in the
complete activation of caspases. VIAF itself is a
substrate for IAP-mediated ubiquitination, suggesting
that it may be a target of IAPs in the prevention of cell
death. The similarity of VIAF to Phd points to a
potential role distinct from apoptosis regulation. Phd
functions as a cytosolic regulator of G protein by
specifically binding to G protein betagamma
(Gbg)-subunits. The C-terminal domain of Phd adopts a
thioredoxin fold, but it does not contain a CXXC motif.
Phd interacts with G protein beta mostly through the
N-terminal helical domain.
Length = 192
Score = 41.1 bits (97), Expect = 0.001
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
K KEEEE+ + + E E KK +E +EE +EE+++ EE +R+R
Sbjct: 16 KPPSPKEEEEEALELAIQEAHENALE-------KKLLDELDEELDEEEDDRFLEEYRRKR 68
Query: 1026 I 1026
+
Sbjct: 69 L 69
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K ++EE+ E ++ + E+K +E EE ++EE+++ RRKR
Sbjct: 16 KPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKR 68
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria, where
L7/L12 forms either two or three homodimers and each
homodimer binds to the extended C-terminal helix of L10.
L7/L12 is attached to the ribosome through L10 and is the
only ribosomal protein that does not directly interact
with rRNA. Archaeal L12p is believed to function in a
similar fashion. However, hybrid ribosomes containing the
large subunit from E. coli with an archaeal stalk are
able to bind archaeal and eukaryotic elongation factors
but not bacterial elongation factors. In several
mesophilic and thermophilic archaeal species, the binding
of 23S rRNA to protein L11 and to the L10/L12p pentameric
complex was found to be temperature-dependent and
cooperative.
Length = 106
Score = 39.4 bits (92), Expect = 0.001
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEE 1015
EEK ++K+EE+K+EEEK+EEEE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 37.9 bits (88), Expect = 0.003
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEE 1020
++K EEKEEE+KKEEE++EEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 37.5 bits (87), Expect = 0.004
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E+K ++KEEEK++EE+KEEEE+E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 36.7 bits (85), Expect = 0.008
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
++K EE++EE++K+EE+E+EEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 34.8 bits (80), Expect = 0.039
Identities = 15/19 (78%), Positives = 18/19 (94%)
Query: 957 KEEEEEEKKKEEKKKEEEE 975
EE+EEEKKKEE+K+EEEE
Sbjct: 78 AEEKEEEKKKEEEKEEEEE 96
Score = 34.4 bits (79), Expect = 0.062
Identities = 13/24 (54%), Positives = 21/24 (87%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKE 980
EE+ E+K+EEKKKEEE+++++E
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 34.0 bits (78), Expect = 0.068
Identities = 15/25 (60%), Positives = 22/25 (88%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEE 1008
EEK +E+EEEKKK++++EE+EEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 34.0 bits (78), Expect = 0.079
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEE 1009
+++ EE++++KKKEEEKEEEE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEE 95
Score = 34.0 bits (78), Expect = 0.080
Identities = 15/25 (60%), Positives = 22/25 (88%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEE 1009
E+K EE+EE+KKK++E+E+EEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 33.2 bits (76), Expect = 0.14
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGG 872
+++ E+K++++++EE E+EEEE G
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 32.9 bits (75), Expect = 0.22
Identities = 10/25 (40%), Positives = 21/25 (84%)
Query: 980 EGKTKKEEKKKEEEEEKKKKKKEEE 1004
+ K EEK++E+++E++K+++EEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.9 bits (75), Expect = 0.22
Identities = 13/19 (68%), Positives = 19/19 (100%)
Query: 957 KEEEEEEKKKEEKKKEEEE 975
+E+EEE+KK+EEK++EEEE
Sbjct: 79 EEKEEEKKKEEEKEEEEEE 97
Score = 32.5 bits (74), Expect = 0.24
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 10/37 (27%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
E+K EEK++E+ KKEE+K+EEEEE
Sbjct: 71 AAAAEEKAEEKEEEK----------KKEEEKEEEEEE 97
Score = 31.7 bits (72), Expect = 0.42
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 1002 EEEKEEEEKKEEEEKEEEEKK 1022
+E+ E+KEEE+K+EEEK+
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKE 92
Score = 31.7 bits (72), Expect = 0.46
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 1002 EEEKEEEEKKEEEEKEEEEKK 1022
E++ EEK+EE++KEEE+++
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEE 93
Score = 31.7 bits (72), Expect = 0.46
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+E+ EEK+++KK+EE++EEE++E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.9 bits (70), Expect = 0.81
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
+E+ ++K++E+++E ++EEEE G
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 30.9 bits (70), Expect = 0.91
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEG 981
EE+ EEK++E+KK+EE+E++++E
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 30.5 bits (69), Expect = 1.4
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEG 981
K EE+EE+KK+E++KEEEE++ G
Sbjct: 77 KAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 29.4 bits (66), Expect = 2.7
Identities = 11/25 (44%), Positives = 22/25 (88%)
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEE 1013
EE+ E+K+++K++E+E+EE++EE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.4 bits (66), Expect = 2.8
Identities = 9/21 (42%), Positives = 18/21 (85%)
Query: 1001 KEEEKEEEEKKEEEEKEEEEK 1021
EEK EE+++E++++EE+E+
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEE 93
Score = 28.6 bits (64), Expect = 4.9
Identities = 8/23 (34%), Positives = 19/23 (82%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKE 980
EE+ +++E++K++EE+K++E
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEE 94
Score = 28.6 bits (64), Expect = 5.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 1002 EEEKEEEEKKEEEEKEEEEKK 1022
EE+ +++EEEK++EE+K
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEK 91
Score = 28.6 bits (64), Expect = 6.1
Identities = 10/25 (40%), Positives = 22/25 (88%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKE 1006
+++ ++KEEE++K+++K+EEE+E
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.6 bits (64), Expect = 6.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 10/37 (27%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
EEK +E+++++++E EEK++EEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKE----------EEKEEEEEE 97
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 42.0 bits (99), Expect = 0.001
Identities = 33/164 (20%), Positives = 52/164 (31%), Gaps = 6/164 (3%)
Query: 838 GGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGG 897
G R K +E+++++ E+E EEE G + R S +E E ++ E
Sbjct: 103 GATRNYEADKLDEEQEERVEKER----EEELAGDAMKKLENRTADSKREMEVLERLEELK 158
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
+ RR S RR ++ + RRR
Sbjct: 159 ELQSRRADVDVNSMLEA--LFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDS 216
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
E++EE+ K K K+ K E K K
Sbjct: 217 EDDEEDNDNTPSPKSGSSSPAKPTSILKKSAAKRSEAPSSSKAK 260
Score = 40.9 bits (96), Expect = 0.002
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 30/101 (29%)
Query: 957 KEEEEEEKKKEEKKKEEEEK---KKKEGKTKKEEKKKEEEE------------------- 994
K +EE+E++ E++++EE KK E +T +++ E E
Sbjct: 112 KLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVNS 171
Query: 995 --------EKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
EKK++++EEE++E K E E+ RRR
Sbjct: 172 MLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRAD 212
Score = 35.5 bits (82), Expect = 0.11
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 19/89 (21%)
Query: 958 EEEEEEKKKEEKKKEEEEK-----KKKEGKTKKEEKKKEEEE--EKKKKKKEEE------ 1004
++ +EE+++ +K+ EEE KK E +T +++ E E E+ K+ +
Sbjct: 111 DKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVDVN 170
Query: 1005 ------KEEEEKKEEEEKEEEEKKRRRIR 1027
E+K+EEEE+EE+E + +
Sbjct: 171 SMLEALFRREKKEEEEEEEEDEALIKSLS 199
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface glycoprotein
C-terminal domain. The trypanosome parasite expresses
these proteins to evade the immune response.
Length = 98
Score = 39.0 bits (91), Expect = 0.001
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
++K+ + K K +E K KK G + E EK K KK+++ ++ K E
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNT 73
Score = 38.6 bits (90), Expect = 0.002
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
K +++E+ K + K+ + +K + E+ + KK KK+ +K
Sbjct: 17 KWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKG 66
Score = 34.3 bits (79), Expect = 0.043
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 961 EEEKKKEEKKKEEE---EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
++ K + + KE+ +KK+ +GK K +E K ++ + E E+ K +++K+
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 1018 EEEK 1021
+ +K
Sbjct: 62 DCKK 65
Score = 33.6 bits (77), Expect = 0.092
Identities = 13/62 (20%), Positives = 29/62 (46%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ + E K+K K ++E+ K + K K +K + + EK + +K +++ K
Sbjct: 5 NKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCK 64
Query: 1017 EE 1018
+
Sbjct: 65 KG 66
Score = 32.4 bits (74), Expect = 0.25
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
KK + K + +E+ K + K + K +E + KK + E E+ K +++KK
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Score = 31.6 bits (72), Expect = 0.46
Identities = 12/64 (18%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE---EKEEEEKKEEEEKEE 1018
+K K + + +E+ K + + + K KE + +K + + EK + ++ ++
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
Query: 1019 EEKK 1022
+ KK
Sbjct: 62 DCKK 65
Score = 31.3 bits (71), Expect = 0.57
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 957 KEEEEEEK---KKEEKKKEEEE--KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
++E++ K K+ + KK + T ++ K K+++++ KK K E
Sbjct: 19 DKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNT 73
Score = 30.9 bits (70), Expect = 0.91
Identities = 12/52 (23%), Positives = 24/52 (46%)
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
++ K K E K K + K+E++ K K K+ + K+ + E ++
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEK 53
Score = 29.3 bits (66), Expect = 2.8
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
GK ++ + E +K K K KK+ KK + E K
Sbjct: 31 EGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEGNTCK 75
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family are
designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 41.6 bits (98), Expect = 0.001
Identities = 28/153 (18%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 886 EEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
EEE +K+ + ++++R K + + +++++ + + R +++ R
Sbjct: 71 EEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWA 130
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
RR + K+ ++ +E + +++ K + + +K++E++++K+ +EE
Sbjct: 131 PTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRK-KIQAKARKRKEKKKEKELTQEERL 189
Query: 1006 EEEEKKEE---------EEKEEEEKKRRRIRRK 1029
E ++ E EE+EEE+KK + K
Sbjct: 190 AEAKETERINLKSLERYEEQEEEKKKAKIQALK 222
Score = 39.7 bits (93), Expect = 0.004
Identities = 12/106 (11%), Positives = 46/106 (43%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
+ +R R ++++R + + + ++++++ + + KK+ E
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLD 135
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+K + K+ E+ +E + ++ + + +KR+ ++++
Sbjct: 136 SPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEK 181
Score = 39.7 bits (93), Expect = 0.005
Identities = 39/173 (22%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 856 EEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRS 915
E++E +EEEG + +E +KKK+ + +KK+++
Sbjct: 61 SEDDEPESDDEEEG---------EKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAK 111
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
+ R +++ R RR+ R + + E +E++ KK + +
Sbjct: 112 SPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKA 171
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
+K+KE K+++K+ +EE+ + KE E+ + E E++EEEKK+ +I+
Sbjct: 172 RKRKE----KKKEKELTQEERLAEAKETERINLKSLERYEEQEEEKKKAKIQA 220
Score = 38.9 bits (91), Expect = 0.007
Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 29/171 (16%)
Query: 848 EEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKK------EGGGGRRR 901
+E + +EE E+ ++EE +++R + ++ KE +KKKK +
Sbjct: 64 DEPESDDEEEGEKELQREERLK-----KKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAP 118
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRR-----------RRRRRRRRRRRRRRRRRRRRRRR 950
R +KK R + RR+ R R + R RR++ + + R+R+ ++
Sbjct: 119 RPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKK 178
Query: 951 RRRRSGKEEEEEEKKKEEK-------KKEEEEKKKKEGKTKKEEKKKEEEE 994
+ + +EE E K+ E+ + EE+E++KK+ K + +K++ E
Sbjct: 179 KEKELTQEERLAEAKETERINLKSLERYEEQEEEKKKAKIQALKKRRLYEG 229
Score = 37.0 bits (86), Expect = 0.035
Identities = 36/167 (21%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 818 GRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRR 877
G + +R+++ +KKK + + + KKKKK+
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTK------KKKKKDPT------------------- 108
Query: 878 RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
+ KKK E RR+S R + + + R + R RR++ +
Sbjct: 109 AAKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQ 168
Query: 938 RRRRRRRRRRRRRR-----RRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
+ R+R+ +++ + R KE E K E+ +E+EE+KKK
Sbjct: 169 AKARKRKEKKKEKELTQEERLAEAKETERINLKSLERYEEQEEEKKK 215
Score = 33.1 bits (76), Expect = 0.62
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
R RR R ++ +E EE+E EEEE + E +++EEEEE
Sbjct: 4 RARRSNAGNRMKKLLEEELEEDEFFWTYLLFEEEE-----DDEEFEIEEEEEEEEVDSDF 58
Query: 1001 KEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ E +E E +EEE E+E ++ R+++K+
Sbjct: 59 DDSEDDEPESDDEEEGEKELQREERLKKKK 88
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 39.3 bits (92), Expect = 0.001
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGG 872
EE+++++EEEEE E+ EEE G
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 36.6 bits (85), Expect = 0.008
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 1000 KKEEEKEEEEKKEEEEKEEEE 1020
EE+EEEE++EEEE+EE E
Sbjct: 73 AAAEEEEEEEEEEEEEEEESE 93
Score = 36.6 bits (85), Expect = 0.008
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
E+++++EEEEE E+E EE G
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 36.6 bits (85), Expect = 0.010
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEE 1015
++++++EEE+EEEE++ EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 35.8 bits (83), Expect = 0.016
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 848 EEEKKKKKEEEEEGGEKEEEEGGGGGG 874
EEE+++++EEEEE E EEE G G
Sbjct: 76 EEEEEEEEEEEEEEEESEEEAMAGLGA 102
Score = 35.4 bits (82), Expect = 0.025
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 993 EEEKKKKKKEEEKEEEEKKEEEEKE 1017
++++EEE+EEEE++EE E+E
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 35.0 bits (81), Expect = 0.036
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 999 KKKEEEKEEEEKKEEEEKEEEE 1020
EEE+EEEE++EEEE+E EE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEE 94
Score = 34.2 bits (79), Expect = 0.060
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKE 980
E+++EE+++EEEE+++ E
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESE 93
Score = 33.9 bits (78), Expect = 0.073
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 990 KEEEEEKKKKKKEEEKEEEEKKEEE 1014
EEE++++++EEE+EEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEES--EEE 95
Score = 33.9 bits (78), Expect = 0.094
Identities = 11/19 (57%), Positives = 18/19 (94%)
Query: 957 KEEEEEEKKKEEKKKEEEE 975
+EEEEEE+++EE+++E EE
Sbjct: 76 EEEEEEEEEEEEEEEESEE 94
Score = 33.5 bits (77), Expect = 0.10
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 998 KKKKEEEKEEEEKKEEEEKEEEE 1020
+EEE+EEEE++EEEE+ EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 33.5 bits (77), Expect = 0.12
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKE 980
EE+++EE+++EEEE++ +E
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEE 94
Score = 33.5 bits (77), Expect = 0.12
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 989 KKEEEEEKKKKKKEEEKEEEE 1009
EEEE++++++EEE+EE E
Sbjct: 73 AAAEEEEEEEEEEEEEEEESE 93
Score = 33.1 bits (76), Expect = 0.13
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEG 981
EEEEEE+++EE+++EE E++ G
Sbjct: 76 EEEEEEEEEEEEEEEESEEEAMAG 99
Score = 33.1 bits (76), Expect = 0.13
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEE 1018
+++EEE+EEEE++EEE +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.18
Identities = 11/23 (47%), Positives = 19/23 (82%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEE 1008
++EEEEE++++++EEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.18
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 848 EEEKKKKKEEEEEGGEKEEEEGGGGGG 874
+++++EEEEE E+EE E G
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 32.7 bits (75), Expect = 0.21
Identities = 11/24 (45%), Positives = 19/24 (79%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEE 1009
+EEEEE++++++EEE+ EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.24
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEE 1007
+++EEEEE++++++EE +EE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.3 bits (74), Expect = 0.29
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEE 995
++++E + ++EE+++E EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.3 bits (74), Expect = 0.30
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+++++EEE+EEEE+ EE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEE---EESEEE 95
Score = 31.9 bits (73), Expect = 0.35
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 1003 EEKEEEEKKEEEEKEEEEKK 1022
EE++EEEE+EEEE++
Sbjct: 71 AAAAAEEEEEEEEEEEEEEE 90
Score = 31.9 bits (73), Expect = 0.42
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEE 1009
EEEEE++++++EEE+E EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
Score = 31.9 bits (73), Expect = 0.44
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 980 EGKTKKEEKKKEEEEEKKKKKKEEE 1004
+EE+++EEEEE+++++ EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 31.6 bits (72), Expect = 0.50
Identities = 11/19 (57%), Positives = 18/19 (94%)
Query: 957 KEEEEEEKKKEEKKKEEEE 975
+EEEEEE+++EE+++ EEE
Sbjct: 77 EEEEEEEEEEEEEEESEEE 95
Score = 31.2 bits (71), Expect = 0.64
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKE 1006
E+++EEEEE++++++E E+E
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 31.2 bits (71), Expect = 0.74
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEG 981
+ EEE+++EE+++EEEE+ ++E
Sbjct: 70 AAAAAAEEEEEEEEEEEEEEEESEEEA 96
Score = 31.2 bits (71), Expect = 0.82
Identities = 9/25 (36%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEE 995
EE++++E ++EE+++EE EE
Sbjct: 73 AAAEEEEEEE---EEEEEEEEESEE 94
Score = 30.8 bits (70), Expect = 0.89
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 1002 EEEKEEEEKKEEEEKEEEEKK 1022
EEE++EEEE+EEEE++
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEE 91
Score = 30.8 bits (70), Expect = 0.89
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 1002 EEEKEEEEKKEEEEKEEEEK 1021
+EEEE++EEEE+EEEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEES 92
Score = 29.6 bits (67), Expect = 2.8
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 1002 EEEKEEEEKKEEEEKEEEEKK 1022
EEEE++EEEE+EEEE+
Sbjct: 72 AAAAEEEEEEEEEEEEEEEES 92
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 41.9 bits (99), Expect = 0.001
Identities = 18/77 (23%), Positives = 43/77 (55%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
R + + SG+ +E + ++E E KKK K +++EK+ EE E+ ++++E
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKEL 347
Query: 1005 KEEEEKKEEEEKEEEEK 1021
+ E+ +++ ++ E++
Sbjct: 348 NSKLEEIQKKLEDLEKR 364
Score = 36.1 bits (84), Expect = 0.080
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
EEE E KKK +K E+EK+ +E E+ EE +E K +E +K+ E+ ++
Sbjct: 310 RLNEEERELKKKFTEKIREKEKRLEE----LEQNLIEERKELNSKLEEIQKKLEDLEKRL 365
Query: 1015 EKEEEEKK 1022
EK + K
Sbjct: 366 EKLKSNKS 373
Score = 34.6 bits (80), Expect = 0.25
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEK-KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R +EE E +KK EK +E+E++ ++ E +E K+ + E+ +KK E+ ++ EK
Sbjct: 310 RLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEK 367
Score = 34.6 bits (80), Expect = 0.25
Identities = 16/70 (22%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E+ K + +E + + + ++E KKK E+ ++K+K+ EE E+ +E +E
Sbjct: 290 EKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNS 349
Query: 1019 E-EKKRRRIR 1027
+ E+ ++++
Sbjct: 350 KLEEIQKKLE 359
Score = 32.3 bits (74), Expect = 1.5
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E + EK + + K E + EEE E KKK E+ +E+E++ EE E+ E++
Sbjct: 285 ENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEER 344
Query: 1023 RRRIR 1027
+
Sbjct: 345 KELNS 349
Score = 31.9 bits (73), Expect = 1.8
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
R R K++ E+ +++EK+ EE E+ E +++E + EE +KK + E++ E
Sbjct: 310 RLNEEERELKKKFTEKIREKEKRLEELEQNLIE---ERKELNSKLEEIQKKLEDLEKRLE 366
Query: 1008 EEKKEEE 1014
+ K +
Sbjct: 367 KLKSNKS 373
Score = 31.1 bits (71), Expect = 2.7
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEE-EEKKKKEGKTKKEEKKKEEEEEKKK 998
R R +++ +E+E+ ++ E+ EE +E K + +K+ + E+ EK K
Sbjct: 310 RLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLEKLK 369
Query: 999 KKKE 1002
K
Sbjct: 370 SNKS 373
>gnl|CDD|222389 pfam13801, Metal_resist, Heavy-metal resistance. This is a
metal-binding protein which is involved in resistance to
heavy-metal ions. The protein forms a four-helix hooked
hairpin, consisting of two long alpha helices each
flanked by a shorter alpha helix. It binds a metal ion
in a type-2 like centre. It contains two copies of an
LTXXQ motif.
Length = 125
Score = 39.5 bits (93), Expect = 0.001
Identities = 16/60 (26%), Positives = 17/60 (28%)
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
G R RR +RR R R RR R RR R RR
Sbjct: 15 GAALRGPGGPGPGGPRRRPGLGPAALALPPEQRRALRAALRAHRREVRPLRRALRAARRE 74
Score = 39.5 bits (93), Expect = 0.001
Identities = 15/56 (26%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRR---RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
R RRR +RR R R RR R RR R+ + E
Sbjct: 19 RGPGGPGPGGPRRRPGLGPAALALPPEQRRALRAALRAHRREVRPLRRALRAARRE 74
Score = 38.8 bits (91), Expect = 0.003
Identities = 17/60 (28%), Positives = 18/60 (30%)
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
G R RRR +RR R R RR R RR R RR
Sbjct: 14 AGAALRGPGGPGPGGPRRRPGLGPAALALPPEQRRALRAALRAHRREVRPLRRALRAARR 73
Score = 35.7 bits (83), Expect = 0.025
Identities = 14/56 (25%), Positives = 15/56 (26%), Gaps = 2/56 (3%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRR--RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
R RRR +RR R R RR R RR E
Sbjct: 19 RGPGGPGPGGPRRRPGLGPAALALPPEQRRALRAALRAHRREVRPLRRALRAARRE 74
Score = 32.2 bits (74), Expect = 0.41
Identities = 11/56 (19%), Positives = 13/56 (23%), Gaps = 3/56 (5%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRR---RRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE 968
R RRR +RR R R RR + E
Sbjct: 19 RGPGGPGPGGPRRRPGLGPAALALPPEQRRALRAALRAHRREVRPLRRALRAARRE 74
Score = 31.1 bits (71), Expect = 1.0
Identities = 11/56 (19%), Positives = 14/56 (25%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
R RRR +RR R R RR ++E
Sbjct: 19 RGPGGPGPGGPRRRPGLGPAALALPPEQRRALRAALRAHRREVRPLRRALRAARRE 74
Score = 30.3 bits (69), Expect = 1.9
Identities = 19/103 (18%), Positives = 25/103 (24%), Gaps = 25/103 (24%)
Query: 870 GGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
G R G + G + R R+ R RR R RR
Sbjct: 14 AGAALRGPGGPGPGGP-------RRRPGLGPAALALPPEQRRALRAALRAHRREVRPLRR 66
Query: 930 RRRRRRRR------------------RRRRRRRRRRRRRRRRR 954
R RR R+R R + R +
Sbjct: 67 ALRAARRELLALLRAEPFDPAALRAALARQREARAALQARVQE 109
>gnl|CDD|222616 pfam14239, RRXRR, RRXRR protein. This domain is found in bacteria,
eukaryotes and viruses, and is approximately 180 amino
acids in length. It contains a conserved RRXRR motif. It
is often found in association with pfam01844.
Length = 174
Score = 40.2 bits (95), Expect = 0.001
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R ++ + R RRR RRRRR R+ R R+ R R+R G
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRPKGW 121
Score = 37.9 bits (89), Expect = 0.010
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R ++ + R RRR RRRRR R+ R R+ R R+R
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
Score = 37.5 bits (88), Expect = 0.012
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
R ++ + R RRR RRRRR R+ R R+ R R+R
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
Score = 37.5 bits (88), Expect = 0.012
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R ++ + R RRR RRRRR R+ R R+ R R+R
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
Score = 37.2 bits (87), Expect = 0.015
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
R ++ K R RRR RRRRR R+ R R+ R R+R
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
Score = 36.8 bits (86), Expect = 0.020
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
R + + R RRR RRRRR R+ R R+ R R+R
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
Score = 36.8 bits (86), Expect = 0.020
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
R + + R RRR RRRRR R+ R R+ R R+R
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
Score = 36.8 bits (86), Expect = 0.021
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
R ++ K+R SRRR RRRR R+ R R+ R R+R
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
Score = 36.8 bits (86), Expect = 0.024
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
R + + R RRR RRRRR R+ R R+ R R+R
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
Score = 36.4 bits (85), Expect = 0.026
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
R ++ + R RRR RRRRR R+ R R+ R R+R
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
Score = 36.4 bits (85), Expect = 0.027
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
R ++ + R RRR RRRRR R+ R R+ R R+R
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
Score = 35.2 bits (82), Expect = 0.075
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
R + + RRR RRRRR R+ R R+ R R+R
Sbjct: 82 RGQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
Score = 31.8 bits (73), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
G + + R RRR RRRR R+ R R+ R R+R
Sbjct: 83 GQQIKERLLSRRRLRRRRRNRKTRYRKPRFLNRKRP 118
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 40.6 bits (95), Expect = 0.001
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E+ E KK KKK+ +KKK TKK +KKK+E+EE + EE + EE +E ++K
Sbjct: 41 EDVEIPSKKTSKKKKTTPRKKK--TTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKV 98
Query: 1018 EEEK 1021
+ E
Sbjct: 99 DYEL 102
Score = 35.9 bits (83), Expect = 0.047
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E+ E K+ KK++ +KK+ K ++KKKE+EE + +E EE ++ +++ +
Sbjct: 41 EDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDY 100
Query: 1019 EEKK 1022
E K
Sbjct: 101 ELPK 104
Score = 35.2 bits (81), Expect = 0.096
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK--KEEEKEEEEKKEEEEKE 1017
E KK +KKK KKK KTKK++K+KEE E ++ EE EE +KK + E
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELP 103
Query: 1018 EEEKK 1022
+ +
Sbjct: 104 KVQNT 108
Score = 34.0 bits (78), Expect = 0.20
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E +K ++ E+ E K+ KK+ ++++ KK KKK++EKEE + EE
Sbjct: 27 TTESVDKVNDDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELS 86
Query: 1018 EEEK 1021
+ E+
Sbjct: 87 DSEE 90
Score = 34.0 bits (78), Expect = 0.20
Identities = 16/72 (22%), Positives = 35/72 (48%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
S K ++++ +KK ++ KKKK+ K + E EE + ++ ++ ++K + E + +
Sbjct: 47 SKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQ 106
Query: 1015 EKEEEEKKRRRI 1026
E I
Sbjct: 107 NTAAEVNHEDVI 118
Score = 30.9 bits (70), Expect = 2.2
Identities = 10/65 (15%), Positives = 35/65 (53%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
++++ R+++ +++ K+++E+E+ E +E + ++ E KK + + + + +
Sbjct: 52 KKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAE 111
Query: 1000 KKEEE 1004
E+
Sbjct: 112 VNHED 116
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding protein
(GBP) is induced by interferon-gamma during macrophage
induction. This family contains GBP1 and GPB2, both
GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 41.5 bits (98), Expect = 0.001
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE- 1015
KE EE + ++ +EK + + K E + E+E ++K+K+EE+ E +++ +E
Sbjct: 185 KEAVEEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEH 244
Query: 1016 ----KEEEEKKRRRIRR 1028
E+ E +R ++
Sbjct: 245 VKQLIEKMEAEREKLLA 261
Score = 40.7 bits (96), Expect = 0.003
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE----EKKKKKKEEEKEEEEKKE 1012
+E E++K+EE+ E +E+ +E + EK + E E E+++ + + +E+EE +
Sbjct: 220 QELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEELLK 279
Query: 1013 EEEKEEEEKKRRRIR 1027
E K E E ++ I+
Sbjct: 280 EGFKTEAESLQKEIQ 294
Score = 38.4 bits (90), Expect = 0.012
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 957 KEEEEEEKKKE--EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
K E E K E E ++E +K+KE + E +++ +E K+ ++ E E E+ E+
Sbjct: 204 KAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQ 263
Query: 1015 EKEEEEKKRR 1024
E+ E K +
Sbjct: 264 ERMLEHKLQE 273
Score = 38.4 bits (90), Expect = 0.016
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE---EEKKKKKKEEEKEEEEKKEEE 1014
+E+ + E K E E +++ EK+KEEE E +++ +E K+ EK E E
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQEL----LREKQKEEEQMMEAQERSYQEHVKQLIEKMEAE 255
Query: 1015 EKEEEEKKRRRIRRKR 1030
++ ++ R + K
Sbjct: 256 REKLLAEQERMLEHKL 271
Score = 33.4 bits (77), Expect = 0.60
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
K+ EE + + +EK E E K + + E++ EK++EEE+ E ++R
Sbjct: 183 NSKEAVEEAILQTDQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERS 240
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 42.2 bits (100), Expect = 0.002
Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 5/109 (4%)
Query: 914 RSRRRRRRRRRRRRRR---RRRRRRRRRRRRRRRRRRRRRRRRRSGKE--EEEEEKKKEE 968
R+ + +++ + R R+ R R + R R ++ R K+ + K +
Sbjct: 439 RAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAK 498
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
K + K G E +K + + + E++ + K+
Sbjct: 499 KAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKK 547
Score = 39.2 bits (92), Expect = 0.013
Identities = 14/97 (14%), Positives = 32/97 (32%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK 988
R + +++ + R R+ R R E KK E + +++ + + K
Sbjct: 439 RAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAK 498
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
K + K E ++ + + R+
Sbjct: 499 KAAATQPIVIKAGARPDNSAVIAAREARKAQARARQA 535
Score = 38.8 bits (91), Expect = 0.015
Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 22/137 (16%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR------------RRRRR 948
R ++++++ ++R R+ R R + R R ++ R R + +
Sbjct: 439 RAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAK 498
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK----------K 998
+ + + E +K + + E++ + KK K
Sbjct: 499 KAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAK 558
Query: 999 KKKEEEKEEEEKKEEEE 1015
KK ++ + EEE
Sbjct: 559 AKKAAQQAANAEAEEEV 575
Score = 38.8 bits (91), Expect = 0.017
Identities = 16/98 (16%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE 991
R + +++ + R R+ R E E+ +E + K+ E + + K +
Sbjct: 439 RAIEQEKKKAEEAKARFEARQAR----LEREKAAREARHKKAAEARAAKDK----DAVAA 490
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K KK + K R R+
Sbjct: 491 ALARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKA 528
Score = 36.5 bits (85), Expect = 0.079
Identities = 31/176 (17%), Positives = 59/176 (33%), Gaps = 53/176 (30%)
Query: 900 RRRRRKKRR--RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR------------RRRRR 945
R ++K++ ++ R R+ R R + R R ++ R R + +
Sbjct: 439 RAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAK 498
Query: 946 ------------------------RRRRRRRRRSGKEEEEEEKKKEEKKKE-----EEEK 976
R R+ + R+ + E++ + KK K
Sbjct: 499 KAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQAAAAADPKKAAVAAAIARAK 558
Query: 977 KKKEGKTKKEEKKKEEEEEKK----------KKKKEEEKEEEEKKEEEEKEEEEKK 1022
KK + + +EE + KK K KK ++ + EE+ E + KK
Sbjct: 559 AKKAAQQAANAEAEEEVDPKKAAVAAAIARAKAKKAAQQAASAEPEEQVAEVDPKK 614
Score = 33.0 bits (76), Expect = 0.92
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 2/92 (2%)
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
R + +++ + R + E++K +E KK E + K++ + K
Sbjct: 439 RAIEQEKKKAEEAKARFEARQARLEREKAA--REARHKKAAEARAAKDKDAVAAALARVK 496
Query: 999 KKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
KK + K + R RK
Sbjct: 497 AKKAAATQPIVIKAGARPDNSAVIAAREARKA 528
Score = 30.7 bits (70), Expect = 4.7
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 987 EKKKEEEEEKKKKKKEEEKEE-EEKKEEEEKEEEEKKRRR 1025
K + E++KKK EE K E ++ E+E+ ++ R
Sbjct: 434 AKAEIRAIEQEKKKAEEAKARFEARQARLEREKAAREARH 473
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 42.2 bits (99), Expect = 0.002
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
+ R +++ + G ++E + + + E E K+ +EEK + KKK+
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQ----REEKGIDAPAILNVKKKK 847
Query: 1003 EEKEE 1007
K +
Sbjct: 848 PYKVD 852
Score = 40.3 bits (94), Expect = 0.007
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE------KKEEEEKE 1017
K K++ +EK + + K E E E E+ K+ EEK + KK++ K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKV 851
Query: 1018 E 1018
+
Sbjct: 852 D 852
Score = 36.9 bits (85), Expect = 0.069
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+ + + KE+ ++E + + E E E K+ EEK +
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDA 837
Score = 30.3 bits (68), Expect = 6.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K+K KE+ ++E K E E E +R I+++
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQR 830
Score = 30.3 bits (68), Expect = 6.4
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
K K K +EK ++E K E E E + K+ EEK
Sbjct: 792 KAAARAKQKPKEKGPNDKE----IKIESPSVETEGERCTIKQREEK 833
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold many
proteins. Hsp70 assisted folding involves repeated cycles
of substrate binding and release. Hsp70 activity is ATP
dependent. Hsp70 proteins are made up of two regions: the
amino terminus is the ATPase domain and the carboxyl
terminus is the substrate binding region.
Length = 598
Score = 41.8 bits (99), Expect = 0.002
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKE--------EKKKEEEEEK-----KKKKKEE 1003
+E E K E+ E++K+K+ + K E EK +EE +K KKK +E
Sbjct: 503 DDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEA 562
Query: 1004 EKEEEEKKEEEEKEEEEKKR 1023
+ +E+ E E+KEE E K
Sbjct: 563 IEWLKEELEGEDKEEIEAKT 582
Score = 35.7 bits (83), Expect = 0.13
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEG-KTKKEEKKKEEEEEKK----------KKKKEE 1003
+GKE++ +E E+ K+ + E+KK++E E K +K +E
Sbjct: 487 TGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSLKE 546
Query: 1004 EKE---EEEKKEEEEKEEEEKK 1022
E + E +KK+ EE E K+
Sbjct: 547 EGDKLPEADKKKVEEAIEWLKE 568
Score = 34.1 bits (79), Expect = 0.37
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 10/81 (12%)
Query: 957 KEEEEEEKKKEEKKKEEE------EKKKKEGKTKKEEKKKEEEEEK----KKKKKEEEKE 1006
E+++ K++ E K E E EK KE K E K++ EE K++ + E+KE
Sbjct: 517 AAEDKKRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKE 576
Query: 1007 EEEKKEEEEKEEEEKKRRRIR 1027
E E K EE ++ + R+
Sbjct: 577 EIEAKTEELQKVVQPIGERMY 597
Score = 33.4 bits (77), Expect = 0.83
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
K K K+++ G + E ++ ++ E+ + ++ KE E K E E
Sbjct: 481 SAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAE 534
Score = 31.0 bits (71), Expect = 3.4
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K K K+++ ++E E K EE E++K++ RI K
Sbjct: 483 KDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAK 530
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the protein
product of the dentatorubral-pallidoluysian atrophy
(DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the expansion
of a CAG repeat in the DRPLA gene on chromosome 12p. This
results in an extended polyglutamine region in
atrophin-1, that is thought to confer toxicity to the
protein, possibly through altering its interactions with
other proteins. The expansion of a CAG repeat is also the
underlying defect in six other neurodegenerative
disorders, including Huntington's disease. One
interaction of expanded polyglutamine repeats that is
thought to be pathogenic is that with the short glutamine
repeat in the transcriptional coactivator CREB binding
protein, CBP. This interaction draws CBP away from its
usual nuclear location to the expanded polyglutamine
repeat protein aggregates that are characteristic of the
polyglutamine neurodegenerative disorders. This
interferes with CBP-mediated transcription and causes
cytotoxicity.
Length = 979
Score = 42.0 bits (98), Expect = 0.002
Identities = 17/41 (41%), Positives = 30/41 (73%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
K KK+EE EK K++ E++ EE ++E+E+++E E++R R
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKERERERER 616
Score = 41.2 bits (96), Expect = 0.003
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K +K++E EK K+E E+K +EE E +K+K+KE E+E E + E K
Sbjct: 576 KLAKKREEAVEKAKREA----EQKAREEREREKEKEKEREREREREAERAAK 623
Score = 40.8 bits (95), Expect = 0.004
Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
KK+E + EK K E E+K ++++E EKE+E+++E E + E E+ +
Sbjct: 579 KKRE---EAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 38.1 bits (88), Expect = 0.026
Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 9/131 (6%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR--RRRRRRRRRRRRRRRRRRSGKEEEEE 962
K R+RR R R R+++ R +R R S + E
Sbjct: 2 KHSMRTRRSRGSMSTLRSGRKKQTASPDGRASPTNEDQRSSGRNSPSAASTSSNDSKAES 61
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK---KKKKEEE----KEEEEKKEEEE 1015
KK +K KEE K K ++E+ + EE ++ KK K +E E + E E
Sbjct: 62 TKKPNKKIKEEATSPLKSTKRQREKPASDTEEPERVTAKKSKTQELSRPNSPSEGEGEGE 121
Query: 1016 KEEEEKKRRRI 1026
E E R +
Sbjct: 122 GEGESSDSRSV 132
Score = 38.1 bits (88), Expect = 0.031
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
KK EE +K K++ E+K EE++ E+EKE+E R R R +
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKE---RERERER 616
Score = 37.4 bits (86), Expect = 0.043
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
+EE E+ K+E ++K EE+++++ K K+ E+++E E E+ K
Sbjct: 581 REEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 37.0 bits (85), Expect = 0.062
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
K K ++E +K + E ++K ++E E+E+E++KE E + E E +R
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 35.4 bits (81), Expect = 0.18
Identities = 17/45 (37%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 964 KKKEE---KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
KK+EE K K E E+K +E + +++EK+KE E E++++ + K
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 34.7 bits (79), Expect = 0.31
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K KK EE E+ K+E E+K EE++R + + K
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEK 608
Score = 34.3 bits (78), Expect = 0.39
Identities = 16/49 (32%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
S K ++ E+ E+ K+E E+K ++E ++ EK+KE+E E++++++ E
Sbjct: 574 SSKLAKKREEAVEKAKREAEQKAREE---REREKEKEKEREREREREAE 619
Score = 33.9 bits (77), Expect = 0.57
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
++R + +++R ++ R R R + + + R R R R R +
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 33.5 bits (76), Expect = 0.67
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
+ ++R++ +R + ++ R R R + + + R R R R R +
Sbjct: 573 ASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 33.5 bits (76), Expect = 0.69
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
K+R +++R ++ R R R + + + R R R R R +
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 33.1 bits (75), Expect = 0.88
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
KK+E + +R +++ R R R + + + R R R R R +
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 33.1 bits (75), Expect = 0.96
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
K + R + +R ++ R R R + + + R R R R R + S E
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHE 630
Score = 33.1 bits (75), Expect = 1.1
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 996 KKKKKKEEEKE----EEEKKEEEEKEEEEKKRRRIRRKR 1030
K KK+EE E E E+K EE+E E++K + R+R
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKERERER 614
Score = 32.4 bits (73), Expect = 1.5
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
KKR + + R ++ R R R + + + R R R R R +
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 32.0 bits (72), Expect = 2.0
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
KK++E +R +K R R R + + R R R R R +
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 32.0 bits (72), Expect = 2.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
++R + +R + +EE E EK+KE++++ E E++
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKERERERERE 617
Score = 32.0 bits (72), Expect = 2.3
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
+R + + +R ++ R R R + + + R R R R R ++ E
Sbjct: 580 KREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHE 630
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with merozoites)
proteins. Variation among SPAM alleles is the result of
deletions and amino acid substitutions in non-repetitive
sequences within and flanking the alanine heptad-repeat
domain. Heptad repeats in which the a and d position
contain hydrophobic residues generate amphipathic
alpha-helices which give rise to helical bundles or
coiled-coil structures in proteins. SPAM is an example of
a P. falciparum antigen in which a repetitive sequence
has features characteristic of a well-defined structural
element.
Length = 164
Score = 39.8 bits (93), Expect = 0.002
Identities = 21/68 (30%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
KE E+ + +K+E +EEEE+ ++E + ++ + +EE E +EE+EEE++++ +
Sbjct: 38 KENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVE------DEEEEEEDEEDNVDL 91
Query: 1017 EEEEKKRR 1024
++ EKK
Sbjct: 92 KDIEKKNI 99
Score = 39.5 bits (92), Expect = 0.003
Identities = 17/58 (29%), Positives = 40/58 (68%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
K+E++E+ ++EE++ EEE ++ ++ + ++E + EEEEE+ ++ + K+ E+K +
Sbjct: 44 KDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNIND 101
Score = 38.7 bits (90), Expect = 0.004
Identities = 23/67 (34%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE-EEEKKEEEEKEEEEKK 1022
KE+ KE E+ K ++ + +EE++++EEE ++ + E+E+E E+++EEEE EE+
Sbjct: 31 WDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVD 90
Query: 1023 RRRIRRK 1029
+ I +K
Sbjct: 91 LKDIEKK 97
Score = 38.7 bits (90), Expect = 0.005
Identities = 17/63 (26%), Positives = 39/63 (61%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+E++E +EE++++EEE ++ E +EE ++EEEE++ ++ + ++ EKK +
Sbjct: 45 DEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFN 104
Query: 1019 EEK 1021
+
Sbjct: 105 STQ 107
Score = 36.4 bits (84), Expect = 0.027
Identities = 17/65 (26%), Positives = 38/65 (58%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+++EEEE++ EE+ +E E+ + +E + EE+++E+EE+ K E+K + +
Sbjct: 49 EDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQD 108
Query: 1017 EEEEK 1021
+ +
Sbjct: 109 DNAQN 113
Score = 32.1 bits (73), Expect = 0.68
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK--EEEEKKEEE 1014
E+ E+E++ E ++EEEE ++ K EKK + + + + KK E+
Sbjct: 65 PEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNLISKNYKKNEK 124
Query: 1015 EKEEEE 1020
K+ E
Sbjct: 125 SKKTAE 130
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is a
family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 41.7 bits (98), Expect = 0.002
Identities = 13/62 (20%), Positives = 21/62 (33%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ KK K E +E K + + K K + EEE++ EE
Sbjct: 58 RPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETP 117
Query: 1017 EE 1018
+
Sbjct: 118 DP 119
Score = 36.3 bits (84), Expect = 0.074
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE--------EEEKKKKKKEEEKEEEE 1009
E E+ EK K KK +E + KK K E + +K + +
Sbjct: 40 ELEQSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPK 99
Query: 1010 KKEEEEKEEEEKK 1022
K + EEE++
Sbjct: 100 SKAPSTESEEEEE 112
Score = 35.5 bits (82), Expect = 0.12
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE--------- 1007
E+ + KK +E + + K+ E EE+ K +K E
Sbjct: 44 SEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAP 103
Query: 1008 EEKKEEEEKEEEEKK 1022
+ EEEE+ EE
Sbjct: 104 STESEEEEEPEETPD 118
Score = 30.9 bits (70), Expect = 4.2
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
S E++E E +E E+ +K K K+ K+ + KK + E E
Sbjct: 24 SKDSTEDDEDILEFL--DELEQSEKA-KPPKKPKEASRPGTPRNPKKSSKPTESSAASSE 80
Query: 1015 EKEEEEKK 1022
EK + +K
Sbjct: 81 EKPAKPRK 88
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 40.3 bits (95), Expect = 0.002
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+K + E+ K E + + ++ ++E+EE +K+ + E K E +K EEE+ + E+KR
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHA 169
Score = 38.0 bits (89), Expect = 0.012
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+ E+ K E E++ K+ +EEK EE EK+ + E + E EK+EEEE++ EEK+
Sbjct: 117 QAEQGKSELEQEIKK---LEEEK---EELEKRVAELEAKLEAIEKREEEERQIEEKRHA 169
Score = 35.3 bits (82), Expect = 0.084
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
GK E E+E KK E++KEE EK+ E + K E +K E EEE++ EEK+ +E
Sbjct: 121 GKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKRE---------EEERQIEEKRHADE 171
Score = 31.4 bits (72), Expect = 1.7
Identities = 11/63 (17%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE--GKTKKEEKKKEEE 993
+ ++ + +R + + E +K+EE++++ EEK+ + KK+ ++ + +
Sbjct: 126 EQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADEIAFLKKQNQQLKSQ 185
Query: 994 EEK 996
E+
Sbjct: 186 LEQ 188
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function (DUF1764).
This is a family of eukaryotic proteins of unknown
function. This family contains many hypothetical
proteins.
Length = 98
Score = 38.2 bits (89), Expect = 0.002
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 966 KEEKKKEEEEKKKKE----GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
KEEKK E+ +K+ + K+++KKK + + K ++ +++++KK+E + EE
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEES 60
Query: 1022 KRRRI 1026
KRRR
Sbjct: 61 KRRRT 65
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S rRNAs,
demonstrating that 5'-end processing also has a redundant
pathway. Nop25 binds late pre-60S ribosomes, accompanying
them from the nucleolus to the nuclear periphery; and
there is evidence for both physical and functional links
between late 60S subunit processing and export.
Length = 134
Score = 39.2 bits (92), Expect = 0.002
Identities = 26/103 (25%), Positives = 51/103 (49%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
KR++ RR++++ + + R R R+R R R++ ++ + R+ + +EE ++E+
Sbjct: 29 KRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEED 88
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
E + E+ E + EG + EEE + K K EE
Sbjct: 89 AETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTVEE 131
Score = 36.9 bits (86), Expect = 0.012
Identities = 25/97 (25%), Positives = 53/97 (54%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
+R+++RR++ + + + R R R+R R R+ E++ +E+K+ K EEE ++
Sbjct: 28 HKRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEE 87
Query: 980 EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ +T+ E +++E E + + EEE E++ K
Sbjct: 88 DAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYK 124
Score = 36.2 bits (84), Expect = 0.020
Identities = 22/59 (37%), Positives = 41/59 (69%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
+K +EE K++E E++ +E K +EE+K+E E++ K++K+ + EEE +EE+ E E+
Sbjct: 36 KKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDT 94
Score = 35.8 bits (83), Expect = 0.026
Identities = 23/100 (23%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT 983
+R+++RR++ + + + R R R+R R +++E E++ KE K+ + +++ + +
Sbjct: 28 HKRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEE 87
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
E + E+ E+ + E E EEE +E+K +
Sbjct: 88 DAETEDTEDVEDDEW---EGFPEPTVTDYEEEYIDEDKYK 124
Score = 28.8 bits (65), Expect = 6.7
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 976 KKKKEGKTKKEE----KKKEEE-----EEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
KKKK K EE K+ +E ++K++++++ +EE ++KE EE+ EE K+ R
Sbjct: 1 KKKKAKKKGVEEVVFDKEARKEYLTGFHKRKQQRRKKAQEEAKEKEREERIEERKRIREE 60
Query: 1027 RRKR 1030
R++
Sbjct: 61 RKQE 64
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 41.7 bits (98), Expect = 0.002
Identities = 17/124 (13%), Positives = 44/124 (35%), Gaps = 2/124 (1%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
+ + + + + RR + + + + + + + + E E
Sbjct: 262 EQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEARE 321
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE--EEEKKEEEEKEEEE 1020
+ ++++E E + +E +++ +EE K E + E E +E EE
Sbjct: 322 MRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEE 381
Query: 1021 KKRR 1024
+R
Sbjct: 382 AERA 385
Score = 35.6 bits (82), Expect = 0.13
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
RRR + + + E E+E + + + + + E + + K E+ E K
Sbjct: 213 RRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILA 272
Query: 1002 EEEKEEEEKKEEEEKEEEEKKR 1023
E E E K E +E E+ +
Sbjct: 273 ETEAEVAAWKAETRREAEQAEI 294
Score = 35.2 bits (81), Expect = 0.17
Identities = 26/182 (14%), Positives = 58/182 (31%), Gaps = 9/182 (4%)
Query: 843 RRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRR 902
+ E E K E E+ E + ++ + +++ + R
Sbjct: 270 ILAETEAEVAAWKAETRREAEQAEILA---------EQAIQEEKAQAEQEVQHAKALEAR 320
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
+ R++ + + R +R+ + + + E E
Sbjct: 321 EMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETE 380
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E ++ E+ + E + + + E + + + + E K E E E+ K E E K
Sbjct: 381 EAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIREKGKAEAEAK 440
Query: 1023 RR 1024
R
Sbjct: 441 RA 442
Score = 32.5 bits (74), Expect = 1.3
Identities = 22/111 (19%), Positives = 42/111 (37%), Gaps = 4/111 (3%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK---- 979
RRR + + + R K E E +++ K E+ ++ K
Sbjct: 213 RRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILA 272
Query: 980 EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E + + K E E ++ + E+ +E+K + E+E + K R R
Sbjct: 273 ETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMR 323
Score = 31.0 bits (70), Expect = 3.9
Identities = 19/108 (17%), Positives = 41/108 (37%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGK 982
RRR + + + R + E E E++ K E+ + K
Sbjct: 213 RRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKIILA 272
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ E + E +++ ++ E E+ +EE+ + E+E + + R
Sbjct: 273 ETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAR 320
Score = 30.6 bits (69), Expect = 4.6
Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 16/210 (7%)
Query: 814 RNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
R + + + E WK RR ++ E ++ +EE+ ++E +
Sbjct: 262 EQTREVKIILAETEAEVAAWK----AETRREAEQAEILAEQAIQEEKAQAEQEVQ----- 312
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
+ R + +++KE + R R+ + + +
Sbjct: 313 -HAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEA 371
Query: 934 RRRRRRRRRRRRRRRRR---RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE--EK 988
R R + + ++E+ E + E K E E + E K + E +
Sbjct: 372 AVETARETEEAERAEQAALVAAAEAAEQEQVEIAVRAEAAKAEAEAQAAEIKAEAEAIRE 431
Query: 989 KKEEEEEKKKKKKE-EEKEEEEKKEEEEKE 1017
K + E E K+ E + + E K
Sbjct: 432 KGKAEAEAKRALAEAIQVLGDAAAAELFKA 461
Score = 30.2 bits (68), Expect = 6.3
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEE 974
+ RRR + + + R + E++ K E+ +
Sbjct: 210 ALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTR---- 265
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E K +T+ E + E ++ ++ E E+ ++E+ + E+E
Sbjct: 266 EVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQE 310
Score = 29.8 bits (67), Expect = 8.8
Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 3/138 (2%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR---RRRRRRRRRRRRRRRRRR 952
GRRR + + + R + ++ + + R +
Sbjct: 210 ALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVKI 269
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+ E E K E +++ E+ + E ++E+ + E+E + K + E +
Sbjct: 270 ILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIER 329
Query: 1013 EEEKEEEEKKRRRIRRKR 1030
++E E E ++R
Sbjct: 330 QKETELEPQERSYFINAA 347
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 41.6 bits (97), Expect = 0.002
Identities = 28/120 (23%), Positives = 47/120 (39%)
Query: 852 KKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSR 911
K ++ ++G G GGR + + E+E ++ + +++ R R
Sbjct: 406 KDDRKYPQDGATHCHAVNGHYGGRVDKDHAERARIEKENAHRKALEMKILEKKRIERLER 465
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
R R R R R R R R R R R R R R R R + + E + E+ ++
Sbjct: 466 EERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLERDRLEKARR 525
Score = 37.8 bits (87), Expect = 0.040
Identities = 23/117 (19%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 886 EEEEKKKKEGG----------GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
+++ K ++G GGR + +R R + + R+ + ++R R R
Sbjct: 406 KDDRKYPQDGATHCHAVNGHYGGRVDKDHAERARIEKENAHRKALEMKILEKKRIERLER 465
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
R R R R R R R + E E +++ +++ ++ ++E + E + E+
Sbjct: 466 EERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLERDRLEK 522
Score = 36.3 bits (83), Expect = 0.10
Identities = 20/88 (22%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
R R + R E + EKK+ E+ + EE ++ + + ++ E+++ E E ++++ E
Sbjct: 437 RARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLER 496
Query: 1004 EKEEEEKKEEEEKEEEEK-KRRRIRRKR 1030
++ E ++ + E+E ++ +R R+ + R
Sbjct: 497 DRLERDRLDRLERERVDRLERDRLEKAR 524
Score = 33.6 bits (76), Expect = 0.78
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE----EKEEEEKKEEEEKEEEEKK 1022
E + E+E +K + K EKK+ E E++++++ E E+ E E+ E E E E +
Sbjct: 436 ERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLERERLE 495
Query: 1023 RRRIRRKR 1030
R R+ R R
Sbjct: 496 RDRLERDR 503
Score = 31.2 bits (70), Expect = 3.4
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R + E EK+ +K E + +K+ + E +++E E ++ ++ E E+ E E+
Sbjct: 429 RVDKDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERER 488
Query: 1011 KEEEEKEEEEKKRRRIRR 1028
E E E + +R R+ R
Sbjct: 489 LERERLERDRLERDRLDR 506
Score = 30.5 bits (68), Expect = 6.9
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
R + + R R + R+ + ++R R R R R R R R E E E
Sbjct: 429 RVDKDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERI---ERERLE 485
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
+++ E+++ E ++ +++ + E ++ + E + +K
Sbjct: 486 RERLERERLERDRLERDRLDRLERERVDRLERDRLEK 522
Score = 30.1 bits (67), Expect = 8.3
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
+K E + +KE +K + K E+++ ++ + EE+E E++ E E E +R R+
Sbjct: 431 DKDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLE 490
Query: 1028 RKR 1030
R+R
Sbjct: 491 RER 493
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 41.5 bits (97), Expect = 0.002
Identities = 24/95 (25%), Positives = 42/95 (44%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK 989
++ RR + R+R + S EEE EK+K K ++ ++ + + K
Sbjct: 10 LKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKA 69
Query: 990 KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
K K+K++ EE EEEK + + K K +
Sbjct: 70 KAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAK 104
Score = 38.8 bits (90), Expect = 0.014
Identities = 23/87 (26%), Positives = 39/87 (44%)
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
++ RR + R+R + E K EE+ +E+E+ K EE K+ K
Sbjct: 10 LKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKA 69
Query: 999 KKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
K K++ E EE +EE+ K + +
Sbjct: 70 KAAALAKQKREGTEEVTEEEKAKAKAK 96
Score = 37.3 bits (86), Expect = 0.042
Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 7/198 (3%)
Query: 830 KKKWKRRGGGRRRRR--GKKEEEKKKKKEEEEEGG---EKEEEEGGGGGGRRRRRRRRSG 884
KK+ RR R+R K E K +EE E K ++ RR ++
Sbjct: 11 KKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAK 70
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
K+K+EG + K + ++ + +++R + + +
Sbjct: 71 AAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAK 130
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
+ + + +++ E EE +EEEE K++ K K K + K+K E
Sbjct: 131 AAAAAKAKAAALAKQKRE--GTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEA 188
Query: 1005 KEEEEKKEEEEKEEEEKK 1022
E E+ EEEK + + K
Sbjct: 189 GEGTEEVTEEEKAKAKAK 206
Score = 35.3 bits (81), Expect = 0.14
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 18/94 (19%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE-----EKKKEEEEEKKKKK---- 1000
+++R G EE EE+K + K K K K K+ E+ EEE+ K K
Sbjct: 75 AKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAA 134
Query: 1001 ---------KEEEKEEEEKKEEEEKEEEEKKRRR 1025
K++ + EE EEEE+ ++EK + +
Sbjct: 135 AKAKAAALAKQKREGTEEVTEEEEETDKEKAKAK 168
Score = 34.6 bits (79), Expect = 0.31
Identities = 42/214 (19%), Positives = 77/214 (35%), Gaps = 36/214 (16%)
Query: 828 EEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEE 887
EK + RR + + + K E E+E E KE+
Sbjct: 3 PEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENRE----------------KEK 46
Query: 888 EEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
K + +RR +++ +++R + + + + + +
Sbjct: 47 ALPKNDDMTIEEAKRRAAAAAKAKAAALAKQKREGTEEVTEEEKAKAKAKAAAAAKAKAA 106
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEE---------KKKKEGKTKKEEKKKEEEEEKKK 998
+++R G EE EE+K K K K+K+EG + E+++E ++EK K
Sbjct: 107 ALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAK 166
Query: 999 KKK-----------EEEKEEEEKKEEEEKEEEEK 1021
K ++K E + EE EEEK
Sbjct: 167 AKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEK 200
Score = 31.5 bits (71), Expect = 2.4
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
E++ E+ KKE ++ +EE +K+ E K EEE ++K+K + ++ +E +
Sbjct: 1 MDPEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAK 60
Query: 1015 EKEEEEKKRR 1024
+ K +
Sbjct: 61 RRAAAAAKAK 70
Score = 29.9 bits (67), Expect = 6.7
Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 25/196 (12%)
Query: 844 RGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSG----KEEEEKKKKEGGGGR 899
+K E ++ EEE+ + + +++R G EEE+ K
Sbjct: 75 AKQKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAA 134
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
+ + + +R + + + + + + + +++ G EE
Sbjct: 135 AKAKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEE 194
Query: 960 EEEEKKKEEKKKEEEEKKKK---------------------EGKTKKEEKKKEEEEEKKK 998
EE+K + K K K K + K K K + K
Sbjct: 195 VTEEEKAKAKAKAAAAAKAKAAALAKQKASQGNGDSGDEDAKAKAIAAAKAKAAAAARAK 254
Query: 999 KKKEEEKEEEEKKEEE 1014
K E K+EEE K+EE
Sbjct: 255 TKGAEGKKEEEPKQEE 270
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 40.7 bits (95), Expect = 0.002
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 956 GKEEEEEEKKKEEKKKE------EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
G+EEEE+E+ + E EEE+++ EG E+ E E KK+ EEE+ EEE
Sbjct: 187 GREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEE 246
Query: 1010 KKEEEEKEEEEKKR 1023
E E EE+
Sbjct: 247 VINLFEIEWEEESP 260
Score = 39.6 bits (92), Expect = 0.006
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK------EEEKEEEE 1009
EEEE ++ + +++EE+E+ + + + EEEEE+ + + E E +
Sbjct: 175 DNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERID 234
Query: 1010 KKEEEEKEEEE 1020
KK+ EE+E EE
Sbjct: 235 KKQGEEEEMEE 245
Score = 35.0 bits (80), Expect = 0.16
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+E+ +E + + EE+++ E + + ++EEE+E+ E E +EEEE+
Sbjct: 160 NDEDNDEAPPAQPDVDNEEEERLE----ESDGREEEEDEEVGSDSYGEGNRELNEEEEEE 215
Query: 1017 EE 1018
E
Sbjct: 216 AE 217
Score = 32.7 bits (74), Expect = 0.85
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
R +EEEEE + ++ + + + ++ K + EE EE EE+ E E EEE E
Sbjct: 206 RELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEE---EEMEEEVINLFEIEWEEESPSE 262
Query: 1013 EEEKEEEEKKRRRIR 1027
E + EE ++ +
Sbjct: 263 EVPRNNEESPAKKQK 277
Score = 32.3 bits (73), Expect = 1.1
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
G E EE+++E + ++ E + ++K+ EEEE +++ E E EE+ EE
Sbjct: 204 GNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEE 263
Score = 29.2 bits (65), Expect = 9.8
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 952 RRRSGKEEEEEEKKKE-EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R + +EEEE E + E + E ++ + + ++EE ++E + + +EE EE
Sbjct: 206 RELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVP 265
Query: 1011 KEEEEKEEEEKK 1022
+ EE +++K
Sbjct: 266 RNNEESPAKKQK 277
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically binds
the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 38.2 bits (89), Expect = 0.002
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK 988
RR R R +R R G ++E + EE+ +EEE+ + +E + +EE
Sbjct: 1 GRREFDRHSGSGRGGEDKREGAGRGNWGSVKDEIAELTEEQGEEEEKNEVEEKQAVEEEA 60
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKE----EEEKEEEEKKR 1023
KE E EEE EEEE KE E EK +EK++
Sbjct: 61 NKEGVVE------EEEVEEEEDKEMTLEEYEKALQEKRK 93
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 41.3 bits (97), Expect = 0.003
Identities = 19/88 (21%), Positives = 37/88 (42%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEE 974
S R R + R + ++ ++ +RR+ ++ E++ K + KK+
Sbjct: 726 SSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDAR 785
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
+ KK KT+K + + KKK E
Sbjct: 786 KAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 40.5 bits (95), Expect = 0.005
Identities = 13/85 (15%), Positives = 38/85 (44%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGK 982
R R + R + ++ ++ +RR+ ++ E + + +++ K + +K ++ K
Sbjct: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAK 788
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEE 1007
+ +K K K+ +++ E
Sbjct: 789 KPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 40.1 bits (94), Expect = 0.006
Identities = 19/85 (22%), Positives = 36/85 (42%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
R R + R + ++ ++ +RR+ E + + EKK + + KK K K
Sbjct: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAK 788
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEE 1009
K K ++ K K+ +K+ E
Sbjct: 789 KPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 35.9 bits (83), Expect = 0.14
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
R R + R + ++ ++ +RR+ GK+ E +K+ + K K+
Sbjct: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKK---DAR 785
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+ KK + +K + K +KK E
Sbjct: 786 KAKKPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 34.7 bits (80), Expect = 0.31
Identities = 16/85 (18%), Positives = 38/85 (44%)
Query: 878 RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
R R GK EK KK G + +RR+ ++ R ++ + + ++ R+ +
Sbjct: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAK 788
Query: 938 RRRRRRRRRRRRRRRRRSGKEEEEE 962
+ + ++ + +R+ K++ E
Sbjct: 789 KPSAKTQKIAAATKAKRAAKKKVAE 813
Score = 33.2 bits (76), Expect = 0.89
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
R R GK E+ KK + KK K+ KK + + +KK K + +++
Sbjct: 729 RAPRNVGKTAREKAKKGDAGKK----GGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDA 784
Query: 1010 KKEEEEKEEEEKKRRRIRRKR 1030
+K ++ + +K + KR
Sbjct: 785 RKAKKPSAKTQKIAAATKAKR 805
Score = 32.0 bits (73), Expect = 2.1
Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 20/102 (19%)
Query: 812 LSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKK-----EEEKKKKKEEEEEGGEKEE 866
+S R R + +++ KK + GG+RR+ GKK + + +K+ + + +K+
Sbjct: 725 ISSERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDA 784
Query: 867 EEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRR 908
R K+ K +K + +R KK+
Sbjct: 785 ---------------RKAKKPSAKTQKIAAATKAKRAAKKKV 811
>gnl|CDD|221313 pfam11917, DUF3435, Protein of unknown function (DUF3435). This
family of proteins are functionally uncharacterized.
This protein is found in eukaryotes. Proteins in this
family are typically between 435 to 791 amino acids in
length. This family is related to pfam00589 suggesting
it may be an integrase enzyme.
Length = 418
Score = 41.2 bits (97), Expect = 0.003
Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 14/108 (12%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
RR R + +++ ++ R+R ++ + + + R +RRR
Sbjct: 270 PRRPRDLTDEQKASVEEDPELQELIRKRDHLKKEIIALYGQVAKAKGTPLYERLEKRRRE 329
Query: 936 RRRRRRRRRRRRRRRRRRR--------------SGKEEEEEEKKKEEK 969
R R+R RR +++ R SG EE K+
Sbjct: 330 VRNERQRLRRELKKKIREEFDEEQPVIDIERQLSGLAVSEEVKEDLPD 377
Score = 33.1 bits (76), Expect = 0.81
Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 909 RSRRRRSRRRRRR----RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
R R R RR R ++ + R+R ++ + K E+
Sbjct: 263 RMSRTRDPRRPRDLTDEQKASVEEDPELQELIRKRDHLKKEIIALYGQVAKAKGTPLYER 322
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK---KKKKEEEKEEEEKKEEEEKEEE 1019
++ +++ E+++ + KK+ +++ +EE+ +++ EE KE+ E+
Sbjct: 323 LEKRRREVRNERQRLRRELKKKIREEFDEEQPVIDIERQLSGLAVSEEVKEDLPDEQL 380
>gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region. This region is
found in plant seed storage proteins, N-terminal to the
Cupin domain (pfam00190). In Macadamia integrifolia, this
region is processed into peptides of approximately 50
amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C
motif. These peptides exhibit antimicrobial activity in
vitro.
Length = 147
Score = 38.9 bits (90), Expect = 0.003
Identities = 24/131 (18%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 880 RRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
+RR +E +++++ R + + K+ ++ +R+R +RR + ++R ++ R R
Sbjct: 17 QRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPT 76
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK--KEGKTKKEEKKKEEEEEKK 997
++R RR + +++ ++ +E +++ +++++ +++ +E + + +E + E E
Sbjct: 77 CQQRCERRYEKEQQQQQRQYQECQQRCQQQEQRPRRQQQCQRECREQYQEHGRGEGENIN 136
Query: 998 KKKKEEEKEEE 1008
++ +EE EE
Sbjct: 137 QEGEEERSEEG 147
Score = 35.8 bits (82), Expect = 0.040
Identities = 27/151 (17%), Positives = 75/151 (49%), Gaps = 6/151 (3%)
Query: 825 KKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSG 884
++ E +R +RR + ++++++ E + +EE+ +++R+R
Sbjct: 2 GRRNEDDPQQRYEQCQRRCEQETRGQREQQQCERRCKEQYKEEQ------QQQRQREEDP 55
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
+ E+ ++ R R ++R RR + +++++R+ + ++R +++ +R RR+++
Sbjct: 56 QRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQRCQQQEQRPRRQQQ 115
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
+R R + + E E +E +++ EE
Sbjct: 116 CQRECREQYQEHGRGEGENINQEGEEERSEE 146
Score = 35.1 bits (80), Expect = 0.064
Identities = 20/122 (16%), Positives = 68/122 (55%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
R +R +++ R + + ++++R+R +RR + ++R ++ R R ++ +
Sbjct: 25 RGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERR 84
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E+E+++++++ +E +++ ++ + + +++ + E +++ ++ E E +E E+E
Sbjct: 85 YEKEQQQQQRQYQECQQRCQQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERS 144
Query: 1020 EK 1021
E+
Sbjct: 145 EE 146
Score = 33.5 bits (76), Expect = 0.19
Identities = 30/155 (19%), Positives = 79/155 (50%), Gaps = 15/155 (9%)
Query: 838 GGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGG 897
G R ++ E+ +++ E+E G++E+++ RR ++ +E+++++
Sbjct: 2 GRRNEDDPQQRYEQCQRRCEQETRGQREQQQC----------ERRCKEQYKEEQQQQRQR 51
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR-----RRRRRRRRRRRR 952
+RR ++ + R ++ R R ++R RR + +++++R ++R +++ +R R
Sbjct: 52 EEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQRCQQQEQRPR 111
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE 987
R+ + E E+ +E + E E ++ + + EE
Sbjct: 112 RQQQCQRECREQYQEHGRGEGENINQEGEEERSEE 146
Score = 30.8 bits (69), Expect = 1.9
Identities = 22/139 (15%), Positives = 77/139 (55%), Gaps = 8/139 (5%)
Query: 842 RRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRR 901
+RR ++E ++++++ E +++ +E ++++R +E+ +++ ++ ++
Sbjct: 17 QRRCEQETRGQREQQQCERRCKEQYKE--------EQQQQRQREEDPQRRYEQCQQRCQQ 68
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
+ R ++R RR + +++++R+ + ++R +++ +R RR+++ +R R +E
Sbjct: 69 HEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQRCQQQEQRPRRQQQCQRECREQYQEHG 128
Query: 962 EEKKKEEKKKEEEEKKKKE 980
+ + ++ EEE+ ++
Sbjct: 129 RGEGENINQEGEEERSEEG 147
Score = 29.3 bits (65), Expect = 5.9
Identities = 27/145 (18%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR 878
+RR ++ + ++++ + RR + KEE++++++ EE+ E+
Sbjct: 17 QRRCEQETRGQREQQQCE---RRCKEQYKEEQQQQRQREEDPQRRYEQ------------ 61
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
++R + E + RR ++++++ R+ + ++R +++ +R RR+++ +R R
Sbjct: 62 CQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQRCQQQEQRPRRQQQCQRECR 121
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEE 963
+ + R + G+EE EE
Sbjct: 122 EQYQEHGRGEGENINQEGEEERSEE 146
Score = 28.9 bits (64), Expect = 7.7
Identities = 15/93 (16%), Positives = 54/93 (58%)
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
RR ++R + +RR + E+++ E + KE+ ++++++ + ++E+ ++ E+
Sbjct: 3 RRNEDDPQQRYEQCQRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQC 62
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
+++ ++ E + ++ E+ E++++++ R+
Sbjct: 63 QQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQ 95
Score = 28.9 bits (64), Expect = 8.3
Identities = 19/111 (17%), Positives = 67/111 (60%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
RR ++R + +RR + R +R +++ RR + +EE++++++ E+ + ++
Sbjct: 3 RRNEDDPQQRYEQCQRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQC 62
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
++ + E + + +++ +++ E+E+++++++ +E ++ +++ +R RR+
Sbjct: 63 QQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQRCQQQEQRPRRQ 113
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 38.4 bits (88), Expect = 0.003
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E+E K E K+E E +KK K + E++KK E+ E + +KK E+ E E++KE E+ +
Sbjct: 49 EDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDAS 108
Query: 1020 EKKR 1023
+KK+
Sbjct: 109 DKKK 112
Score = 30.7 bits (68), Expect = 1.2
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 980 EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
E KT E KKE E+EKK +K E E+E+K E+ E E+E+K +
Sbjct: 51 EMKTTHEHIKKENEDEKKPEKPE--NEDEKKPEKPENEDEKKPEK 93
Score = 30.0 bits (66), Expect = 1.9
Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
K+E E+EKK E K E E++KK E ++EKK E+ E + +K+ E+ ++KK
Sbjct: 60 KKENEDEKKPE--KPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDKKK 112
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell motility
and secretion].
Length = 214
Score = 39.8 bits (93), Expect = 0.003
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
++ +EK +E + KK EE + E+ K+ E+ EE+ E+EK E
Sbjct: 18 FALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSE 77
Query: 1021 KKR 1023
K +
Sbjct: 78 KLK 80
Score = 35.2 bits (81), Expect = 0.11
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+ +E+ E+ + KK ++E E ++ E+ KE +K EEE E+EK E
Sbjct: 20 LEELKEKIEELPIQAKKSDDELV--EELPERYEQTKENSLIEKVDSIEEEISEKEKVMSE 77
Query: 1015 EKEEEE 1020
+ +E
Sbjct: 78 KLKEPA 83
Score = 34.8 bits (80), Expect = 0.13
Identities = 19/74 (25%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 958 EEEEEEKKKEEKKKEEE---EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+E+ EE + KK ++E E ++ +TK+ ++ + +++ ++E+ E+ KE
Sbjct: 24 KEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPA 83
Query: 1015 EK----EEEEKKRR 1024
+ EEEEKK +
Sbjct: 84 QMSSTSEEEEKKAK 97
Score = 33.3 bits (76), Expect = 0.49
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE---EEKKKKKKEEEKEEEEKKEEEE 1015
EE+ EK ++ EE K+K + + KK ++E E ++ ++ +E EK + E
Sbjct: 6 EEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIE 65
Query: 1016 KEEEEKKRRR 1025
+E EK++
Sbjct: 66 EEISEKEKVM 75
Score = 31.4 bits (71), Expect = 1.8
Identities = 15/66 (22%), Positives = 33/66 (50%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
+ +E EE + ++ +E +K ++E +KE+ +K K+ + E++E+
Sbjct: 35 KKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPAQMSSTSEEEEK 94
Query: 1014 EEKEEE 1019
+ K EE
Sbjct: 95 KAKLEE 100
Score = 30.2 bits (68), Expect = 4.4
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
++S E EE ++ E+ KE ++ EEE +K+K E+ +E +
Sbjct: 35 KKSDDELVEELPERYEQTKENS--------LIEKVDSIEEEISEKEKVMSEKLKEPAQMS 86
Query: 1013 EEEKEEEEKKR 1023
+EEE+K +
Sbjct: 87 STSEEEEKKAK 97
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 41.4 bits (98), Expect = 0.003
Identities = 25/73 (34%), Positives = 48/73 (65%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
RR+ + KEE + K KK +E ++++K + +K+E+ ++ K K K+EEE+EE+E
Sbjct: 490 RRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKE 549
Query: 1010 KKEEEEKEEEEKK 1022
+K++E +E+E +
Sbjct: 550 EKDKETEEDEPEG 562
Score = 33.3 bits (77), Expect = 0.88
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
++KE+K KEE + K K +E +E++ E+++K ++ ++ K + +E+EEEE+K
Sbjct: 490 RRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKE 549
Query: 1024 RRI 1026
+
Sbjct: 550 EKD 552
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina
virus topoisomerase, Variola virus topoisomerase, Shope
fibroma virus topoisomeras.
Length = 391
Score = 40.8 bits (96), Expect = 0.003
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E + K++ K K E + +K + + KE+KK++++EEKKKK+ E +E EK E + +
Sbjct: 303 FEMISDLKRKLKSKFERDNEKLDAE-VKEKKKEKKKEEKKKKQIERLEERIEKLEVQATD 361
Query: 1018 EEEKK 1022
+EE K
Sbjct: 362 KEENK 366
Score = 38.5 bits (90), Expect = 0.014
Identities = 16/65 (24%), Positives = 39/65 (60%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
++K + K + ++ KK + + + + K ++ E+ + E K++++EK++EEKK+
Sbjct: 283 QEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKK 342
Query: 1024 RRIRR 1028
++I R
Sbjct: 343 KQIER 347
Score = 38.1 bits (89), Expect = 0.022
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 953 RRSGKEEEEEEKKKEEKKK----EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
+ K + + + K KK E K++ K+K E ++ + E K+KKKE++KEE+
Sbjct: 281 KLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEK 340
Query: 1009 EKKEEEEKEEEEKKRRRIRRKR 1030
+KK+ E EE +K +
Sbjct: 341 KKKQIERLEERIEKLEVQATDK 362
Score = 32.7 bits (75), Expect = 1.1
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK---EEEEEKKKKKKEEEKEEEE 1009
S + + + K + + +K + E K+K+ + KKEEKKK E EE+ +K + + ++EE
Sbjct: 305 MISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEE 364
Query: 1010 KKE 1012
K
Sbjct: 365 NKT 367
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 40.4 bits (95), Expect = 0.004
Identities = 16/87 (18%), Positives = 35/87 (40%)
Query: 894 EGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
EG + + R + R + R R + + ++R R +R +RR
Sbjct: 48 EGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSD 107
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKE 980
S + E+++ + +K ++E K+
Sbjct: 108 LSSASYQLEKRRASQLEKLQDEIKRTR 134
Score = 39.7 bits (93), Expect = 0.006
Identities = 15/86 (17%), Positives = 33/86 (38%)
Query: 894 EGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
G+ K +R++ + R R + + ++R R +R +RR
Sbjct: 51 TNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSS 110
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKK 979
S + E+ + E+ + E + + K
Sbjct: 111 ASYQLEKRRASQLEKLQDEIKRTRSK 136
Score = 34.3 bits (79), Expect = 0.28
Identities = 13/83 (15%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR-RRRRRRRRRRRR--RRRRRSGKEEEE 961
+ + + R++ R + R R + + ++R R +R +RR
Sbjct: 54 DGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSASY 113
Query: 962 EEKKKEEKKKEEEEKKKKEGKTK 984
+ +K+ + E+ + + K ++K
Sbjct: 114 QLEKRRASQLEKLQDEIKRTRSK 136
Score = 33.1 bits (76), Expect = 0.63
Identities = 13/79 (16%), Positives = 36/79 (45%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK 988
+ + R++ R + R R KEE E+++++ E+ K +++ + + +
Sbjct: 56 KLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSASYQL 115
Query: 989 KKEEEEEKKKKKKEEEKEE 1007
+K + +K + E ++
Sbjct: 116 EKRRASQLEKLQDEIKRTR 134
Score = 32.3 bits (74), Expect = 1.2
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
+ R++ R + R R + + ++R R K + + + E
Sbjct: 57 LAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLE 116
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKK 999
K++ EK ++E + + K
Sbjct: 117 KRRASQL----EKLQDEIKRTRSK 136
Score = 30.4 bits (69), Expect = 4.8
Identities = 13/81 (16%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK-EEKKKEEEEKKKKE 980
+ + R++ R + R R + + +E EE K+ +++ + +
Sbjct: 56 KLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSASYQL 115
Query: 981 GKTKKEEKKKEEEEEKKKKKK 1001
K + + +K ++E K+ + K
Sbjct: 116 EKRRASQLEKLQDEIKRTRSK 136
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 40.4 bits (95), Expect = 0.004
Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE---------EKKKEEEEEKKKKK 1000
R + +E + ++EK E EE+K + K+E ++ +E + K
Sbjct: 4 LREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPA 63
Query: 1001 KEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
E E++EEE K E + R +R
Sbjct: 64 ASGEGGGGEEEEEEAKAEAAEFRAYLRGG 92
Score = 37.3 bits (87), Expect = 0.042
Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK--KEEEKEEEEKKEEEEKEEEEKKRR 1024
++ +E + KE + E++K E EE+K + +EE ++ + + + +E ++
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60
Query: 1025 RIRRKR 1030
+
Sbjct: 61 KPAASG 66
Score = 35.8 bits (83), Expect = 0.11
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE--EEEKKKKKKEEEKEEEEKKEEE 1014
+E E K+ K E+E+ + E + + + KEE + + + + EE +E E K
Sbjct: 5 REALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAA 64
Query: 1015 EKEEEEKKRRRIRRKR 1030
E + K
Sbjct: 65 SGEGGGGEEEEEEAKA 80
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this family
was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 39.9 bits (93), Expect = 0.004
Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
R++ R + +E +E+ +EE K++ EE+K++ K +EE KKE E +K+ E
Sbjct: 43 RKKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEAN 102
Query: 1005 KEEEEKKEEEEKEEEE--KKRRRIRRKR 1030
++ + +E E+EE E K R R KR
Sbjct: 103 IDDVDTDDENEEEEYEAWKLRELKRIKR 130
Score = 34.9 bits (80), Expect = 0.19
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
R++ R + R R + + +R+ R+R + K EEE KK+ E KK +
Sbjct: 43 RKKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEAN 102
Query: 980 EGKTKKEEKKKEEEEEK-KKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+++ +EEE E K ++ + K + E++EE E+E+ E ++ R
Sbjct: 103 IDDVDTDDENEEEEYEAWKLRELKRIKRDREEREEMEREKAEIEKMR 149
Score = 33.4 bits (76), Expect = 0.55
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 15/84 (17%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKK--------KKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
EEEEEE ++EE+ E++ + +K+ + +E+++E +EK +++ + K E
Sbjct: 13 SGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRKAE 72
Query: 1008 EEKK-------EEEEKEEEEKKRR 1024
E K+ EE +KE E KKR
Sbjct: 73 ERKRETLKIVEEEVKKELELKKRN 96
Score = 32.2 bits (73), Expect = 1.4
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
E EEE++ EE+++E EE+++ + + E + K KK + +E+E E KE+ +
Sbjct: 5 LELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALE 64
Query: 1017 EEEEKKRRRIRR 1028
EE ++K +R
Sbjct: 65 EEAKRKAEERKR 76
Score = 29.9 bits (67), Expect = 6.7
Identities = 38/177 (21%), Positives = 76/177 (42%), Gaps = 19/177 (10%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
+ EE+ + EEEEE E+EEE + E++ + + + R++ R
Sbjct: 5 LELEEEDESGEEEEEESEEEEE---------------TDSEDDMEPRLKPVFTRKKDRIT 49
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
+ R R + +R+ R+R + ++ ++R ++ +
Sbjct: 50 IQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANIDDVDTD 109
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E +++E E K +E K K ++++ EE E++K E E+ EEE+ E +K
Sbjct: 110 DENEEEEYEAWKLRELKRIKRDREEREEMEREK----AEIEKMRNMTEEERRAELRK 162
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 37.6 bits (88), Expect = 0.004
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 847 KEEEKKKKKEEEEEGGEKEEEEGGGG 872
E+KK++EEEEE E+ EEE G
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 37.2 bits (87), Expect = 0.006
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGG 874
EEKK+++EEEEE E EEE G G
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAAGLGA 103
Score = 36.9 bits (86), Expect = 0.007
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 1000 KKEEEKEEEEKKEEEEKEEEE 1020
EEK+EEE++EEE++E EE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEE 95
Score = 36.5 bits (85), Expect = 0.010
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 999 KKKEEEKEEEEKKEEEEKEEEE 1020
EE+KEEEE++EE+E+ EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
Score = 36.1 bits (84), Expect = 0.015
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEE 1015
++KKEEE+EEEEK+E EE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEE 95
Score = 35.3 bits (82), Expect = 0.022
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
++K+EE+EEEE+KEE E+E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 35.3 bits (82), Expect = 0.027
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEE 1015
++KK+EEE+EEE+++ EEE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 34.9 bits (81), Expect = 0.033
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 956 GKEEEEEEKKKEEKKKEEEE 975
EE++EE+++EE+K+E EE
Sbjct: 76 AAEEKKEEEEEEEEKEESEE 95
Score = 34.5 bits (80), Expect = 0.045
Identities = 13/21 (61%), Positives = 18/21 (85%)
Query: 984 KKEEKKKEEEEEKKKKKKEEE 1004
EEKK+EEEEE++K++ EEE
Sbjct: 76 AAEEKKEEEEEEEEKEESEEE 96
Score = 34.5 bits (80), Expect = 0.053
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEE 1009
EE++E++++++E+E+ EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEE 96
Score = 33.8 bits (78), Expect = 0.083
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEG 981
EE++E+++EE++KEE E++ G
Sbjct: 76 AAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 33.0 bits (76), Expect = 0.14
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 984 KKEEKKKEEEEEKKKKKKEEE 1004
E+KKEEEEE+++K++ EE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEE 95
Score = 32.6 bits (75), Expect = 0.19
Identities = 10/20 (50%), Positives = 18/20 (90%)
Query: 956 GKEEEEEEKKKEEKKKEEEE 975
+E++EEE+++EEK++ EEE
Sbjct: 77 AEEKKEEEEEEEEKEESEEE 96
Score = 32.6 bits (75), Expect = 0.23
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKE 980
E+KKEE+++EEE+++ +E
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEE 95
Score = 32.6 bits (75), Expect = 0.26
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEE 1009
EE++++++++EE++E EE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEE 95
Score = 32.2 bits (74), Expect = 0.34
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 1002 EEEKEEEEKKEEEEKEEEEKK 1022
EEKKEEEE+EEE+++
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEE 92
Score = 31.8 bits (73), Expect = 0.47
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1002 EEEKEEEEKKEEEEKEEEEKK 1022
EE+K+EEEE+EE+E+
Sbjct: 73 AAAAAEEKKEEEEEEEEKEES 93
Score = 31.8 bits (73), Expect = 0.47
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEG 981
EEKK+EE+++EE+E+ ++E
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEEA 97
Score = 31.1 bits (71), Expect = 0.70
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKE 980
++K+E+++EEEEK++ E
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESE 94
Score = 31.1 bits (71), Expect = 0.75
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
EEKK+EEEE EE+K+E EEE
Sbjct: 71 AAAAAAAEEKKEEEEE----------EEEKEESEEE 96
Score = 30.7 bits (70), Expect = 0.92
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 848 EEEKKKKKEEEEEGGEKEEEEGGGGGG 874
++KKEEEEE EKEE E G
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 30.7 bits (70), Expect = 1.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEE 1009
++K+EEEE++++K+E E+E
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 30.7 bits (70), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 1002 EEEKEEEEKKEEEEKEEEEKK 1022
E+K+EEE+EEEEK+
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKE 91
Score = 29.2 bits (66), Expect = 3.7
Identities = 6/19 (31%), Positives = 15/19 (78%)
Query: 957 KEEEEEEKKKEEKKKEEEE 975
EE+++++EE++++EE
Sbjct: 75 AAAEEKKEEEEEEEEKEES 93
Score = 28.0 bits (63), Expect = 9.0
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKE 980
+++++++EEEE+K++
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEES 93
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 38.5 bits (90), Expect = 0.004
Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRR-----------RRRRRRRRRRRRRRRRRRRRRRSGKEE 959
RR R RR R RRRR + RRRRR+ R +
Sbjct: 67 RRAAEARLNRRDRLLRRRRMPAAFLDDDDDDDGDFDLTAQPRRRRRQYDEDRDADDEDID 126
Query: 960 EEEE 963
EE
Sbjct: 127 PLEE 130
Score = 36.2 bits (84), Expect = 0.029
Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRR----------RRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
RR+ R RR R RRRR + RRRRR+ R
Sbjct: 67 RRAAEARLNRRDRLLRRRRMPAAFLDDDDDDDGDFDLTAQPRRRRRQYDEDRDADDEDID 126
Query: 958 EEEEE 962
EEE
Sbjct: 127 PLEEE 131
Score = 31.1 bits (71), Expect = 1.5
Identities = 16/63 (25%), Positives = 22/63 (34%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
RR + R R R RRRR + RRRRR+ R ++ +
Sbjct: 67 RRAAEARLNRRDRLLRRRRMPAAFLDDDDDDDGDFDLTAQPRRRRRQYDEDRDADDEDID 126
Query: 961 EEE 963
E
Sbjct: 127 PLE 129
>gnl|CDD|219248 pfam06978, POP1, Ribonucleases P/MRP protein subunit POP1. This
family represents a conserved region approximately 150
residues long located towards the N-terminus of the POP1
subunit that is common to both the RNase MRP and RNase P
ribonucleoproteins (EC:3.1.26.5). These RNA-containing
enzymes generate mature tRNA molecules by cleaving their
5' ends.
Length = 158
Score = 38.8 bits (91), Expect = 0.004
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 899 RRR------RRRKKRRRSRRRR------SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
RRR +R KR R R +R + + R++ +R R R R+ R+R
Sbjct: 36 RRRTASHNVKRVPKRLRKRAKREMAKDNTPTKLSRKKPSKRLLRLALARPPNLSRKYRKR 95
Query: 947 RRRRRRRRS 955
++R++ +
Sbjct: 96 QKRKKWLET 104
Score = 37.3 bits (87), Expect = 0.013
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 875 RRR----------RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRR 924
RRR +R R+ K E K R++ ++ R + R R+ R+R
Sbjct: 36 RRRTASHNVKRVPKRLRKRAKREMAKDNTPTKLSRKKPSKRLLRLALARPPNLSRKYRKR 95
Query: 925 RRRRRRRR 932
++R++
Sbjct: 96 QKRKKWLE 103
Score = 33.5 bits (77), Expect = 0.27
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 875 RRRRRR------RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
R RRR +R K ++ K+E + +++ S+R R R+
Sbjct: 33 RHLRRRTASHNVKRVPKRLRKRAKREMAKDNTPTKLSRKKPSKRLLRLALARPPNLSRKY 92
Query: 929 RRRRRRRRRRR 939
R+R++R++
Sbjct: 93 RKRQKRKKWLE 103
Score = 32.3 bits (74), Expect = 0.64
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 890 KKKKEGGGGR--RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
KK K R + R RRR+ +R +R R+R +R + + R++ +R
Sbjct: 17 KKSKAASTKRAFQSLPRHLRRRTASHNVKRVPKRLRKRAKREMAKDNTPTKLSRKKPSKR 76
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKK 971
R + +K++++KK
Sbjct: 77 LLRLALARPPNLSRKYRKRQKRKK 100
>gnl|CDD|220331 pfam09660, DUF2397, Protein of unknown function (DUF2397).
Proteins in this entry are encoded within a conserved
gene four-gene neighborhood found sporadically in a
phylogenetically broad range of bacteria including:
Nocardia farcinica, Symbiobacterium thermophilum, and
Streptomyces avermitilis (Actinobacteria), Geobacillus
kaustophilus (Firmicutes), Azoarcus sp. EbN1 and
Ralstonia solanacearum (Betaproteobacteria).
Length = 478
Score = 40.4 bits (95), Expect = 0.005
Identities = 13/42 (30%), Positives = 16/42 (38%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R R RR RR R R R R +R + R + R
Sbjct: 364 RERGRRERRGRAARVRDRSAEKRELAEQAREEQAERAAALAE 405
Score = 40.0 bits (94), Expect = 0.006
Identities = 14/48 (29%), Positives = 18/48 (37%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
+ R R R RR RR R R R R +R + R + R
Sbjct: 358 EVTPRLRERGRRERRGRAARVRDRSAEKRELAEQAREEQAERAAALAE 405
Score = 40.0 bits (94), Expect = 0.007
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R R R RR RR R+ R R R +R + R + R + R S
Sbjct: 361 PRLRERG--RRERRGRAARVRDRSAEKRELAEQAREEQAERAAALAELIAGGKVRLS 415
Score = 32.7 bits (75), Expect = 1.3
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
R R R RR RR R R R R +R + R + E
Sbjct: 361 PRLRERGRRERRGRAARVRDRSAEKRELAEQAREEQAERAAA 402
Score = 31.5 bits (72), Expect = 2.4
Identities = 10/39 (25%), Positives = 14/39 (35%)
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
G RR R + R RS +R + R + R
Sbjct: 367 GRRERRGRAARVRDRSAEKRELAEQAREEQAERAAALAE 405
Score = 31.1 bits (71), Expect = 3.1
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE 968
R R R RR RR R R R R +R ++ +E+ E E
Sbjct: 361 PRLRERGRRERRGRAARVRDRSAEKRELAEQAREEQAERAAALAE 405
Score = 30.0 bits (68), Expect = 7.5
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
R R R RR RR R R R R +R + ++ E E
Sbjct: 361 PRLRERGRRERRGRAARVRDRSAEKRELAEQAREEQAERAAALAE 405
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and 387
amino acids in length.
Length = 213
Score = 39.2 bits (92), Expect = 0.005
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 26/90 (28%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK------------------- 997
+EE+ + G + E + EEE EKK
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGA 174
Query: 998 -------KKKKEEEKEEEEKKEEEEKEEEE 1020
K K++E+ ++ +E + +E+
Sbjct: 175 YYYFKFYKPKQQEKGAPDDDLDEYDYGDED 204
Score = 38.5 bits (90), Expect = 0.010
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 33/96 (34%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK------------------- 998
EEE+ + + E + + EEE +KK
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGA 174
Query: 999 -------KKKEEEK-------EEEEKKEEEEKEEEE 1020
K K++EK +E + +E+E+E++E
Sbjct: 175 YYYFKFYKPKQQEKGAPDDDLDEYDYGDEDEEEDDE 210
Score = 31.9 bits (73), Expect = 1.3
Identities = 8/38 (21%), Positives = 11/38 (28%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+EE E + E E E EE+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEP 152
Score = 31.5 bits (72), Expect = 1.6
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+ E E + E E +EE EKK
Sbjct: 117 EDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKK 155
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 39.7 bits (93), Expect = 0.005
Identities = 29/150 (19%), Positives = 76/150 (50%), Gaps = 7/150 (4%)
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
R+ + +E E ++ + R R ++RR++ + ++++ ++R + + R+R ++
Sbjct: 64 RQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKE 123
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEE----EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
++RR+ + + ++E EE+ E +++ EE+ + E ++ + K E
Sbjct: 124 LEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELE---RENIRAKIE 180
Query: 993 EEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E + + K+E E E+ ++ + K EE++
Sbjct: 181 AEARGRAKEERENEDINREMLKLKANEERE 210
Score = 39.4 bits (92), Expect = 0.006
Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
R+ K + ++++ + R R RR+ + + ++ ++R + + R+R KE
Sbjct: 64 RQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQYQDELARKRYQKE 123
Query: 959 EEEEEKKKEE--KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
E++ ++ EE K +EE +++ + EE+ E E +++ E E+E K E E
Sbjct: 124 LEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEA 183
Query: 1017 E---EEEKKRRRIRRK 1029
+EE++ I R+
Sbjct: 184 RGRAKEERENEDINRE 199
Score = 29.7 bits (67), Expect = 6.7
Identities = 16/74 (21%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE----EKKKEEEEEKKKKKKEEEKEE 1007
K+ E K +E+ ++ E E K KE + ++ E+ + E EE++K +E+ ++E
Sbjct: 46 SSPHAKKAFELSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQE 105
Query: 1008 EEKKEEEEKEEEEK 1021
+++ + +++ ++
Sbjct: 106 QQRAQYQDELARKR 119
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family. Prothymosin
alpha and parathymosin are two ubiquitous small acidic
nuclear proteins that are thought to be involved in cell
cycle progression, proliferation, and cell
differentiation.
Length = 106
Score = 37.2 bits (86), Expect = 0.005
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKE------EKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+EKK+ ++KE + G +E + + EEEEE + +EEE E EE++ EEE
Sbjct: 17 KEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEE 76
Query: 1016 KEEEEKKRRRI 1026
+E E +R
Sbjct: 77 EETEGATGKRA 87
Score = 35.3 bits (81), Expect = 0.029
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE--EEKKKKKKEEEKEEEEKKEEEE 1015
+ E K+ K+K+E ++K+ GK + EE ++ + EEE+E +E EEEE
Sbjct: 6 DAAAELSAKDLKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEE 65
Query: 1016 KEEEE 1020
E EE
Sbjct: 66 GEGEE 70
Score = 31.9 bits (72), Expect = 0.47
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
EE+E K E EE +EG + EE+++ +E++++++ + EE+E EE++E E
Sbjct: 24 EEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEG 81
Score = 31.5 bits (71), Expect = 0.62
Identities = 18/62 (29%), Positives = 43/62 (69%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
G +E ++E ++EE+ E++E+++ EG+ ++ E+++E E K+ E+E+++ E K+++
Sbjct: 43 GAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKKQKT 102
Query: 1016 KE 1017
E
Sbjct: 103 DE 104
Score = 28.8 bits (64), Expect = 5.2
Identities = 18/64 (28%), Positives = 38/64 (59%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E EE +E E EE+++ + ++EE + EEEE +++++ E + ++EE+ E
Sbjct: 38 ENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAET 97
Query: 1020 EKKR 1023
+K++
Sbjct: 98 KKQK 101
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 40.1 bits (94), Expect = 0.006
Identities = 26/120 (21%), Positives = 39/120 (32%)
Query: 821 RRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRR 880
RRRRK E+ + + + + EK + E++ E G +
Sbjct: 308 RRRRKPFEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPDP 367
Query: 881 RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
+ + G R R + R+R RR R R R R R RR R
Sbjct: 368 QEEADGQGSSTDPAGDIFRIRVLAPPQARARGASGRRSRTRSDSRGRYVRARRNRGPPDD 427
Score = 34.3 bits (79), Expect = 0.43
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 840 RRRR----RGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEG 895
RRRR + + ++EK +++ EE G + E+ + G + R +++K+ +
Sbjct: 308 RRRRKPFEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPDP 367
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
+ S R R + R R RR R R R R R RR
Sbjct: 368 QEEA-----DGQGSSTDPAGDIFRIRVLAPPQARARGASGRRSRTRSDSRGRYVRARRNR 422
Query: 956 GK 957
G
Sbjct: 423 GP 424
Score = 31.6 bits (72), Expect = 2.4
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
RRRR+ + GK+E++ E+K EE + E K EG+ E+ ++E
Sbjct: 308 RRRRKPFEQPQGKDEKDLEEKPEEPGPDPE--KPDEGEDDAEQSGPRGHPTPGNDDEKEP 365
Query: 1005 KEEEEKKEEEEKEEEEKKRRRIR 1027
+EE + + RIR
Sbjct: 366 DPQEEADGQGSSTDPAGDIFRIR 388
>gnl|CDD|220774 pfam10477, EIF4E-T, Nucleocytoplasmic shuttling protein for mRNA
cap-binding EIF4E. EIF4E-T is the transporter protein
for shuttling the mRNA cap-binding protein EIF4E protein,
targeting it for nuclear import. EIF4E-T contains several
key binding domains including two functional leucine-rich
NESs (nuclear export signals) between residues 438-447
and 613-638 in the human protein. The other two binding
domains are an EIF4E-binding site, between residues 27-42
in Q9EST3, and a bipartite NLS (nuclear localisation
signals) between 194-211, and these lie in family
EIF4E-T_N. EIF4E is the eukaryotic translation initiation
factor 4E that is the rate-limiting factor for
cap-dependent translation initiation.
Length = 520
Score = 39.9 bits (92), Expect = 0.006
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 9/148 (6%)
Query: 872 GGGRRRRRRRRSGKEEEEKKKKEGGGGRR---RRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
GGG R S + E + G RR R R R R R+ R R R R
Sbjct: 112 GGGCHVTARASSENDNESLRL---LGERRIGSGRIMPSRGFERDFRGPRKDRNPERSRDR 168
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG---KTKK 985
R + +R RR +R RR EEE + + E + G K +
Sbjct: 169 ERDYKDKRFRREFGDSKRVFSESRRNDSYTIEEEPEWFSAGPTSQLETIELIGFDDKILE 228
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
E+ K + K+K +K +K KE
Sbjct: 229 EDDKTSNGDGKQKGRKRTKKRTASVKEG 256
>gnl|CDD|99819 cd05776, DNA_polB_alpha_exo, inactive DEDDy 3'-5' exonuclease
domain of eukaryotic DNA polymerase alpha, a family-B
DNA polymerase. The 3'-5' exonuclease domain of
eukaryotic DNA polymerase alpha. DNA polymerase alpha
is a family-B DNA polymerase with a catalytic subunit
that contains a DnaQ-like 3'-5' exonuclease domain. It
is one of the three DNA-dependent type B DNA polymerases
(delta and epsilon are the other two) that have been
identified as essential for nuclear DNA replication in
eukaryotes. DNA polymerase alpha is almost exclusively
required for the initiation of DNA replication and the
priming of Okazaki fragments during elongation. It
associates with DNA primase and is the only enzyme able
to start DNA synthesis de novo. The catalytic subunit
contains both polymerase and 3'-5' exonuclease domains,
but only exhibits polymerase activity. The 3'-5'
exonuclease domain contains three sequence motifs termed
ExoI, ExoII and ExoIII, without the four conserved
acidic residues that are crucial for metal binding and
catalysis. This explains why in most organisms, that no
specific repair role, other than check point control,
has been assigned to this enzyme. The exonuclease domain
may have a structural role.
Length = 234
Score = 39.1 bits (92), Expect = 0.006
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 401 GIVEFIKFTMLHSSYIIKIMCELNVLPLAIQ 431
+++ ++ T + I+++M +LN+LPL Q
Sbjct: 204 SLLKLLEHTEKDAYLILQLMFKLNILPLTKQ 234
>gnl|CDD|222425 pfam13865, FoP_duplication, C-terminal duplication domain of Friend
of PRMT1. Fop, or Friend of Prmt1, proteins are
conserved from fungi and plants to vertebrates. There is
little that is actually conserved except for this
C-terminal LDXXLDAYM region where X is any amino acid).
The Fop proteins themselves are nuclear proteins
localised to regions with low levels of DAPI, with a
punctate/speckle-like distribution. Fop is a
chromatin-associated protein and it colocalises with
facultative heterochromatin. It is is critical for
oestrogen-dependent gene activation.
Length = 76
Score = 36.3 bits (84), Expect = 0.006
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE 972
R+ R + R R R RR RRR R R+ G + + K +E+ E
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKPKPKTREDLDAE 50
Score = 33.6 bits (77), Expect = 0.054
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
R+ R + R R R RR RRR R R+ + G + + + +++
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKPKPKTRED 46
Score = 31.3 bits (71), Expect = 0.31
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
R+ R + R R R RR RRR R R+ + + + +E+
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKPKPKTRED 46
Score = 31.3 bits (71), Expect = 0.34
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R+ SR + R R R RR RRR R R+ + +
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 30.9 bits (70), Expect = 0.45
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
S R+ R + R R R RR RRR R R+ + +
Sbjct: 1 SGGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 30.1 bits (68), Expect = 0.91
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
R+ SR + R R R RR RRR R R+ + +
Sbjct: 3 GRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 30.1 bits (68), Expect = 0.93
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
R R + R R R RR RRR R R+ + +
Sbjct: 1 SGGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 30.1 bits (68), Expect = 1.0
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
+ R + R R R RR RRR R R+ + +
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 30.1 bits (68), Expect = 1.0
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
R R + R R R RR RRR R R+ + +
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 29.7 bits (67), Expect = 1.5
Identities = 12/39 (30%), Positives = 16/39 (41%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
R+ R R R R RR RRR R R+ + +
Sbjct: 1 SGGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 29.0 bits (65), Expect = 2.5
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 813 SRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEE 857
+ R + R + ++ +RRG G R+ +G + K K +E+
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKPKPKTRED 46
Score = 29.0 bits (65), Expect = 2.5
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
RK R + R R RR RRR R R+ + +
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 28.6 bits (64), Expect = 3.0
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
+K R + R R R RR RRR R R+ + +
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 28.6 bits (64), Expect = 3.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
GG + R K R R R R RRR R R+ + +
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 28.6 bits (64), Expect = 3.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
R+ R R R R RR RRR R R+ + +
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 28.6 bits (64), Expect = 3.5
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
+ R + R R R RR RRR R R+ + +
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 27.8 bits (62), Expect = 6.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
+K GG+ R R + RR RRR R+ + +
Sbjct: 3 GRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 27.8 bits (62), Expect = 7.2
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 892 KKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
G R + R + R +RR R R R R+ + +
Sbjct: 1 SGGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 27.8 bits (62), Expect = 7.3
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
R+ + + R R RR RRR R R+ + +
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 27.4 bits (61), Expect = 8.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
GGR+ R K R R R RRR R R+ + +
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
Score = 27.4 bits (61), Expect = 9.1
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
R+ + + R R RR RRR R R+ + +
Sbjct: 2 GGRKGSRGGKFRPRGRGARRGRRRGRGGRKGKGGAAKP 39
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This family
includes archaebacterial L12, eukaryotic P0, P1 and P2.
Length = 88
Score = 36.4 bits (85), Expect = 0.007
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 1000 KKEEEKEEEEKKEEEEKEEEE 1020
EEEKKEEEE+EEE+
Sbjct: 60 AAAAAAAEEEKKEEEEEEEED 80
Score = 34.9 bits (81), Expect = 0.025
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 955 SGKEEEEEEKKKEEKKKEEEE 975
+ EE+KKEE+++EEE+
Sbjct: 60 AAAAAAAEEEKKEEEEEEEED 80
Score = 34.5 bits (80), Expect = 0.035
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 999 KKKEEEKEEEEKKEEEEKEEEE 1020
EEE+K+EEEE+EE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 33.8 bits (78), Expect = 0.067
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 989 KKEEEEEKKKKKKEEEKEEEE 1009
+++KK+EEE+EEE+
Sbjct: 60 AAAAAAAEEEKKEEEEEEEED 80
Score = 33.4 bits (77), Expect = 0.081
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGG 871
+++K+EEEE E++++ G G
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDDDMGFG 86
Score = 32.6 bits (75), Expect = 0.14
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGGGG 874
+++++EEE E+EEE+ G G
Sbjct: 59 AAAAAAAAEEEKKEEE--EEEEEDDDMGFG 86
Score = 32.6 bits (75), Expect = 0.17
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 995 EKKKKKKEEEKEEEEKKEEEE 1015
+EE+KEEEE++EE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 32.2 bits (74), Expect = 0.23
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 987 EKKKEEEEEKKKKKKEEEKEEEE 1009
E++KK++EEE+EE++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
Score = 32.2 bits (74), Expect = 0.24
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 955 SGKEEEEEEKKKEEKKKEEEE 975
+ EEEKK+EE+++EE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 29.9 bits (68), Expect = 1.4
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 995 EKKKKKKEEEKEEEEKKEEEEKE 1017
EE+++EE++EEEE +
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
Score = 29.9 bits (68), Expect = 1.4
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 998 KKKKEEEKEEEEKKEEEEKEEE 1019
+EE++++EEEE+E++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 29.1 bits (66), Expect = 2.3
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEE 995
++E KKEE+++EEE++
Sbjct: 60 AAAAAAAEEE---KKEEEEEEEEDD 81
Score = 28.7 bits (65), Expect = 3.6
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 997 KKKKKEEEKEEEEKKEEEEKEE 1018
E+E++E++EEEE+++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 28.7 bits (65), Expect = 3.7
Identities = 5/24 (20%), Positives = 14/24 (58%)
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEE 1004
EEE++++++++EE+
Sbjct: 57 AAAAAAAAAAEEEKKEEEEEEEED 80
Score = 28.4 bits (64), Expect = 5.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 961 EEEKKKEEKKKEEEEKKKKEG 981
EE+KKEEEE+++++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter subunit
G; Reviewed.
Length = 197
Score = 38.9 bits (90), Expect = 0.007
Identities = 22/79 (27%), Positives = 49/79 (62%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
R R + RS K+++ ++KK ++E+ EK ++E + +E + E EEK +++++E++E
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
Query: 1008 EEKKEEEEKEEEEKKRRRI 1026
E++E+ +E+ + I
Sbjct: 162 REREEQTIEEQSDDSEHEI 180
Score = 37.0 bits (85), Expect = 0.025
Identities = 20/96 (20%), Positives = 53/96 (55%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R R + R ++ ++++ R+ + + R+ R E E E+K +E++ +EE++
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+++E +T +E+ E E ++ + E E ++++ ++
Sbjct: 162 REREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 37.0 bits (85), Expect = 0.029
Identities = 20/96 (20%), Positives = 57/96 (59%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK 985
R R + R ++ ++++ R+ + ++ +E EE E++ E +++EE+ ++++ + ++
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
E++++ EE+ + E E++E + E + ++ EK
Sbjct: 162 REREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 36.6 bits (84), Expect = 0.031
Identities = 18/86 (20%), Positives = 56/86 (65%)
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
R R + R ++ ++++S +E+ +K ++++E EE+ + E + +K ++++++EE++
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKK 1022
++++++ +E+ + E E E++E +
Sbjct: 162 REREEQTIEEQSDDSEHEIIEQDESE 187
Score = 36.6 bits (84), Expect = 0.033
Identities = 20/96 (20%), Positives = 55/96 (57%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
R R + R ++ ++++ R+ + ++E EE +++ E ++ EE+ ++E + ++E
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+++E+ E++ E E E+++ E E +++ +K
Sbjct: 162 REREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 35.8 bits (82), Expect = 0.064
Identities = 24/105 (22%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
R R + R ++ ++++ R+ + + R+ R EE E +++EEK E E++
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQ---- 157
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
EE+++E EE+ +++ ++ + E +++E E E ++ K +
Sbjct: 158 -----EEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 34.7 bits (79), Expect = 0.15
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
R R + R ++ ++++ R+ + + R+ R R RR + R +EE+E
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
E +EE+ EE+ + +++E + E +++K +K
Sbjct: 162 RE--REEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 34.3 bits (78), Expect = 0.18
Identities = 17/57 (29%), Positives = 37/57 (64%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
K+++ KKKK ++E+ +K +E ++ +++ E + EEK +E E +EE+++ R +
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQ 167
Score = 33.1 bits (75), Expect = 0.43
Identities = 22/99 (22%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
R R + R ++ ++++ R+ + + R+ R + E EEK E + +EE+E
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
++++E + E++ ++ E + ++ E E E ++ K E+
Sbjct: 162 REREE---QTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 32.0 bits (72), Expect = 1.1
Identities = 20/94 (21%), Positives = 44/94 (46%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
R + R K+ ++++S R+ + + R+ R R RR + R + +E
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
EE+ +++ E E ++ E +T+ ++ K E+
Sbjct: 164 REEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 30.8 bits (69), Expect = 2.8
Identities = 14/50 (28%), Positives = 31/50 (62%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEE 868
+ R+ R++ EE+ +W+RR R ++E+E++++++ EE + E E
Sbjct: 130 KARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHE 179
Score = 29.3 bits (65), Expect = 8.9
Identities = 17/94 (18%), Positives = 47/94 (50%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
R + R ++ ++++ R+ + + R+ R R R ++ +E E ++E++++
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
EE+ +++ + E +++E E + + EK
Sbjct: 164 REEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 38.7 bits (90), Expect = 0.007
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
G+E EE K K ++KKE E+ +KE + ++EK E+ ++K+KK+E +E +E+ EE
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
Query: 1016 KEEE 1019
+E E
Sbjct: 201 EELE 204
Score = 37.9 bits (88), Expect = 0.014
Identities = 26/159 (16%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 873 GGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
G+ R ++ G+ + + +++ + + + R R +++
Sbjct: 44 YGKTSRLKKSKGRGIVKGDIEIEKDEGKKKTYVEITFENNKGKLKLRLIEESRELTKKKG 103
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEE---------EEKKKEEKKKEEEEKKKKEGKT 983
++ ++ + K ++E +E+ +E K K +E+K++ E
Sbjct: 104 KKVKKSILEIVEIDELQEFIDELLKSDKEILPLLLYLGQERLEELKFKRKEKKERLEELE 163
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
K+ E+ ++E++ +K +E+EK++E ++ +EE EE ++
Sbjct: 164 KELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEE 202
Score = 33.7 bits (77), Expect = 0.32
Identities = 17/61 (27%), Positives = 38/61 (62%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R + +E++++ EE +KE EE + ++ +K ++KE+++E ++ K+E E+ EE
Sbjct: 144 RLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEEL 203
Query: 1011 K 1011
+
Sbjct: 204 E 204
Score = 31.8 bits (72), Expect = 1.3
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
R + +R K+E EE +KE ++ E+E+ ++ +KE+KK+ EE +++ ++ EE
Sbjct: 144 RLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEEL 203
Query: 1006 E 1006
E
Sbjct: 204 E 204
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 39.3 bits (92), Expect = 0.007
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+EE E K + E+++ +++KKKK+ KTKK E E + E K
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAK 225
Query: 1017 EEEEKKR 1023
+ ++K+
Sbjct: 226 KLKKKRS 232
Score = 37.3 bits (87), Expect = 0.024
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
EEE E K +++ ++KKKK+ K K+ E + + E
Sbjct: 164 PTEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGE 223
Query: 1016 KEEEEKKRR 1024
++ +KKR
Sbjct: 224 AKKLKKKRS 232
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1, thyroid
transcription factor 1. In the lungs, the family binds
TTF-1 to form a complex which influences the expression
of the key lung surfactant protein-B (SP-B) and -C
(SP-C), the small hydrophobic surfactant proteins that
maintain surface tension in alveoli.
Length = 150
Score = 37.9 bits (88), Expect = 0.007
Identities = 23/116 (19%), Positives = 63/116 (54%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEE 974
+ +++ ++ R + + +R ++ R ++ + E++ E++ K +
Sbjct: 4 VDQNQKKNGKKFTREYKVKEIQRNLTKKARLKKEYLKLLEKEGYAVPEKESAEKQVKSSK 63
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E +K E K K +EKK+ ++ K++++++E + +++ E+ E ++++K R RRK+
Sbjct: 64 EDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRRKK 119
Score = 33.7 bits (77), Expect = 0.20
Identities = 20/74 (27%), Positives = 49/74 (66%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
KE E++ K ++ ++ E+KKK + K + +++K E+ EK+ K+++E E+ E ++++K
Sbjct: 52 KESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQK 111
Query: 1017 EEEEKKRRRIRRKR 1030
E E ++++ ++ +
Sbjct: 112 ERERRRKKLTKKTK 125
Score = 29.5 bits (66), Expect = 4.7
Identities = 14/74 (18%), Positives = 42/74 (56%)
Query: 884 GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
++E +K+ + R+ +KK+ ++ +++R+R +R + +R++ + +++
Sbjct: 50 PEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKK 109
Query: 944 RRRRRRRRRRRSGK 957
++ R RRR++ + K
Sbjct: 110 QKERERRRKKLTKK 123
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin binding
protein sp32 sequences. sp32 is a sperm specific protein
which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved in
packaging the acrosin zymogen into the acrosomal matrix.
Length = 243
Score = 38.9 bits (90), Expect = 0.007
Identities = 18/68 (26%), Positives = 34/68 (50%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
R EE + + K K + + K +E +E K ++K+ ++E+EE++
Sbjct: 170 ERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEV 229
Query: 1013 EEEKEEEE 1020
EEE ++EE
Sbjct: 230 EEEAKQEE 237
Score = 38.9 bits (90), Expect = 0.008
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+ K K K+E+ K + +E K EE++ ++++EEE+ EEE K+EE + ++
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYL--QEHK--TEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 38.5 bits (89), Expect = 0.011
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 952 RRRSGKEEEEEE---KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
R EE + + + + K+++ +K +E +E + E+K+ ++E+E+EE
Sbjct: 170 ERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEV 229
Query: 1009 E---KKEEEEKEEE 1019
E K+EE + ++
Sbjct: 230 EEEAKQEEGQGTDD 243
Score = 36.9 bits (85), Expect = 0.036
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTK-KEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+ E+ ++ + G + K K K+E+ K ++ +E + EEK+ +E
Sbjct: 163 QSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQE 222
Query: 1015 EKEEEE 1020
E+EEEE
Sbjct: 223 EQEEEE 228
Score = 36.2 bits (83), Expect = 0.056
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+S + E E+ + + K + K+E+ K ++ +E K EE++ +
Sbjct: 162 NQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQ 221
Query: 1013 EEEKEEEE 1020
EE++EEE
Sbjct: 222 EEQEEEEV 229
Score = 33.5 bits (76), Expect = 0.39
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 952 RRRSGKEEEE----EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
+ E E+ + + K K K+E+ + +E ++ K EE++ +
Sbjct: 162 NQSFQPWPERLHNNVEELLQSSLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQ 221
Query: 1008 EEKKEEEEKEEEEKKR 1023
EE +EEE+ EEE K+
Sbjct: 222 EE--QEEEEVEEEAKQ 235
Score = 29.2 bits (65), Expect = 9.4
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEG 869
K K+E+ K + + + +K+ ++++++EE EE ++EE +G
Sbjct: 195 PKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQG 240
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known are
cyclin dependent protein kinases that are components of
TFIIH, a complex that is involved in nucleotide excision
repair and transcription initiation. Also known as MAT1
(menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 39.4 bits (92), Expect = 0.008
Identities = 20/109 (18%), Positives = 53/109 (48%), Gaps = 20/109 (18%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
+++ ++ + ++ + +S +E+EE E+ E +K+EEE++ + +K+EEE
Sbjct: 119 KKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQR-------RLLLQKEEEE 171
Query: 994 EEKKKKKKEEEKEEE-------------EKKEEEEKEEEEKKRRRIRRK 1029
++ K+K ++ +E + K+ K E + ++ + +
Sbjct: 172 QQMNKRKNKQALLDELETSTLPAAELIAQHKKNSVKLEMQVEKPKPEKP 220
Score = 39.0 bits (91), Expect = 0.010
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+KK E +K+ K+ K +EK E+EE ++ + E++EEE+++ +KEEEE++ +
Sbjct: 117 NTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNK 176
Query: 1026 IRRKR 1030
+ K+
Sbjct: 177 RKNKQ 181
Score = 37.1 bits (86), Expect = 0.036
Identities = 18/105 (17%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
+++ ++ + ++ + + R + ++EEEE+++ +K+EEE++ K
Sbjct: 119 KKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKR- 177
Query: 982 KTKKE--------EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
K K+ E + KK + + + EK + E+
Sbjct: 178 KNKQALLDELETSTLPAAELIAQHKKNSVKLEMQVEKPKPEKPNT 222
Score = 32.1 bits (73), Expect = 1.6
Identities = 19/72 (26%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 956 GKEEEEEEKKKEEKKKEEEEK-KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+ E +KK E +KE ++ +K + K+ +E+++ EE E +K+++E+ + +K+EEE
Sbjct: 112 NIDLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEE 171
Query: 1015 EKEEEEKKRRRI 1026
++ + K ++ +
Sbjct: 172 QQMNKRKNKQAL 183
>gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.
Length = 572
Score = 39.9 bits (93), Expect = 0.008
Identities = 25/114 (21%), Positives = 34/114 (29%), Gaps = 27/114 (23%)
Query: 862 GEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRR 921
GE+ ++E G G R R EE+++ G R RR +
Sbjct: 403 GEEADDEAGDSVGTIFREAREQRAAEEQRRGGGRSGPGGGSRSGSVGGGGRRDGAGADGK 462
Query: 922 RRRRRRRRRRRRR---------------------------RRRRRRRRRRRRRR 948
R RR+ R R R+RRRRR R
Sbjct: 463 PRPRRKPRVEGEADAAAAGAETPVVAAAAAQAPGVVAADGERAPRKRRRRRNGR 516
Score = 36.9 bits (85), Expect = 0.066
Identities = 27/115 (23%), Positives = 36/115 (31%), Gaps = 27/115 (23%)
Query: 860 EGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRR 919
EG E ++E G G R R + EE+ + G G R RR +
Sbjct: 402 EGEEADDEAGDSVGTIFREAREQRAAEEQRRGGGRSGPGGGSRSGSVGGGGRRDGAGADG 461
Query: 920 RRRRRRRRRRRRRR---------------------------RRRRRRRRRRRRRR 947
+ R RR+ R R R+RRRRR R
Sbjct: 462 KPRPRRKPRVEGEADAAAAGAETPVVAAAAAQAPGVVAADGERAPRKRRRRRNGR 516
Score = 36.1 bits (83), Expect = 0.11
Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 14/112 (12%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR 878
R R ++ EE+++ R G R GG + + G G R RR
Sbjct: 419 REAREQRAAEEQRRGGGRSGPGGGSRSGSVG-----------GGGRRDGAGADGKPRPRR 467
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
+ R G E G + R R+RRRRR R
Sbjct: 468 KPRVEG---EADAAAAGAETPVVAAAAAQAPGVVAADGERAPRKRRRRRNGR 516
Score = 34.9 bits (80), Expect = 0.23
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 9/107 (8%)
Query: 847 KEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKK 906
+E +++ EE+ GG G G G R G + +G R RRK
Sbjct: 419 REAREQRAAEEQRRGG------GRSGPGGGSRSGSVGGGGRRDGAGADGKP---RPRRKP 469
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R + + R R+RRRRR R
Sbjct: 470 RVEGEADAAAAGAETPVVAAAAAQAPGVVAADGERAPRKRRRRRNGR 516
Score = 30.3 bits (68), Expect = 6.1
Identities = 18/76 (23%), Positives = 26/76 (34%)
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
R R EE + + + G R R++R +RR R R RR
Sbjct: 395 RPPRVPVEGEEADDEAGDSVGTIFREAREQRAAEEQRRGGGRSGPGGGSRSGSVGGGGRR 454
Query: 937 RRRRRRRRRRRRRRRR 952
+ R RR+ R
Sbjct: 455 DGAGADGKPRPRRKPR 470
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 40.1 bits (94), Expect = 0.008
Identities = 16/79 (20%), Positives = 37/79 (46%)
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
++++ ++ + +EE+E + E + ++E+K E +EK EE+ +
Sbjct: 1504 QKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAE 1563
Query: 997 KKKKKEEEKEEEEKKEEEE 1015
KK + K++ + E E
Sbjct: 1564 SDIKKRKNKKQYKSNTEAE 1582
Score = 35.1 bits (81), Expect = 0.26
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK--EEEEKKEEEEKEEEEKKRRR 1025
EKK E E + +E +KE + E E K+KK E +EK EE+ E + K+R+
Sbjct: 1514 EKKSIEIENRNQE---EKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRK 1570
Query: 1026 IRRK 1029
+++
Sbjct: 1571 NKKQ 1574
Score = 34.7 bits (80), Expect = 0.35
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 3/38 (7%)
Query: 984 KKEEKKK---EEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
K E K EE+ KKKKKKE++KEEE K+EE+ + E
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 33.9 bits (78), Expect = 0.63
Identities = 15/75 (20%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE--EKKKKKKEEEKEE 1007
++++ E++ + E + +EE+E + +EKK E ++K EE+ E
Sbjct: 1504 QKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAE 1563
Query: 1008 EEKKEEEEKEEEEKK 1022
+ K+ + K++ +
Sbjct: 1564 SDIKKRKNKKQYKSN 1578
Score = 32.4 bits (74), Expect = 1.5
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
++ E K EEK +++KK+E++KEEE K+ + R
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 32.0 bits (73), Expect = 2.1
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
++ E K + +E+ +KKKK+ K K+EE K+EE+
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 32.0 bits (73), Expect = 2.3
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
K E K ++K ++++KK+KKKEEE + EEK E E
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 31.6 bits (72), Expect = 2.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
K E K + ++K + K KKE+KK+EE + ++K + E
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 31.2 bits (71), Expect = 3.8
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
EKK E + +E+K+ G+ + E K+++ + +E+ EE+ E + K+ +
Sbjct: 1512 SNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKN 1571
Query: 1021 KKR 1023
KK+
Sbjct: 1572 KKQ 1574
Score = 30.5 bits (69), Expect = 6.2
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
K+ + K + ++K KK+++K EKK+EEE + EEK R I
Sbjct: 729 NGKDAEFKISDSVEEKTKKKKKK---EKKKEEEYKREEKARIEI 769
Score = 30.5 bits (69), Expect = 6.4
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
K E K + E+K K K KK+EKKKEEE ++++K + E E
Sbjct: 730 GKDAEFKISDSVEEKTK--KKKKKEKKKEEEYKREEKARIEIAE 771
Score = 30.5 bits (69), Expect = 7.3
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
+ EEK K++KKKE KKKE + K+EEK + E E
Sbjct: 739 DSVEEKTKKKKKKE----KKKEEEYKREEKARIEIAE 771
Score = 30.5 bits (69), Expect = 7.3
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
K E + + K++KKKE+++E++ K++E+ + E
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 30.1 bits (68), Expect = 7.9
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
K + + E+K +++++K+KKK+EE K EE+ + E
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 39.6 bits (93), Expect = 0.008
Identities = 19/87 (21%), Positives = 25/87 (28%), Gaps = 15/87 (17%)
Query: 847 KEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKK 906
E + EE + +EE E+EE K E
Sbjct: 112 DEPRYDDAYRDLEEDDDDDEESDE---------------EDEESSKSEDDEDDDDDDDDD 156
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRR 933
+R R RRRRRR +R
Sbjct: 157 DIATRERSLERRRRRREWEEKRAELEF 183
Score = 36.1 bits (84), Expect = 0.092
Identities = 12/75 (16%), Positives = 36/75 (48%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+ EEE + E + + +++ +E +++EE K + ++++ ++++
Sbjct: 102 DDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATR 161
Query: 1016 KEEEEKKRRRIRRKR 1030
+ E++RRR +
Sbjct: 162 ERSLERRRRRREWEE 176
Score = 33.8 bits (78), Expect = 0.51
Identities = 10/42 (23%), Positives = 11/42 (26%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
K R R RRRRRR +R
Sbjct: 142 KSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAELEF 183
Score = 33.0 bits (76), Expect = 0.94
Identities = 10/41 (24%), Positives = 11/41 (26%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
S R R RRRRRR +R
Sbjct: 143 SEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAELEF 183
Score = 33.0 bits (76), Expect = 0.97
Identities = 10/44 (22%), Positives = 12/44 (27%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
S + R R RRRRRR +R
Sbjct: 140 SSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAELEF 183
Score = 31.9 bits (73), Expect = 1.9
Identities = 9/33 (27%), Positives = 10/33 (30%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R R RRRRRR +R
Sbjct: 151 DDDDDDDIATRERSLERRRRRREWEEKRAELEF 183
Score = 31.5 bits (72), Expect = 2.5
Identities = 10/40 (25%), Positives = 12/40 (30%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
S+ R R RRRRRR +R
Sbjct: 141 SKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRAE 180
Score = 31.1 bits (71), Expect = 3.9
Identities = 10/40 (25%), Positives = 12/40 (30%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
S + R R RRRRRR +R
Sbjct: 140 SSKSEDDEDDDDDDDDDDIATRERSLERRRRRREWEEKRA 179
Score = 30.3 bits (69), Expect = 6.3
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R R RRRRRR +R+
Sbjct: 151 DDDDDDDIATRERSLERRRRRREWEEKRA 179
>gnl|CDD|146285 pfam03566, Peptidase_A21, Peptidase family A21.
Length = 628
Score = 39.5 bits (92), Expect = 0.008
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
+R RRRSR R + +RR+RRRRR R+
Sbjct: 8 KRMPGRRRSRNVRVAAQTVTVAPKRRQRRRRRAGRK 43
Score = 39.5 bits (92), Expect = 0.009
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
+R RRRSR R + +RR+RRRRR R+
Sbjct: 6 ASKRMPGRRRSRNVRVAAQTVTVAPKRRQRRRRRAGRK 43
Score = 38.4 bits (89), Expect = 0.024
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
S+R RRR R R + +RR+RRRRR R+
Sbjct: 7 SKRMPGRRRSRNVRVAAQTVTVAPKRRQRRRRRAGRK 43
Score = 38.0 bits (88), Expect = 0.031
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
S+R RRR R R + +RR+RRRRR R+
Sbjct: 7 SKRMPGRRRSRNVRVAAQTVTVAPKRRQRRRRRAGRK 43
Score = 37.6 bits (87), Expect = 0.040
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
RRR R R ++ +RR+RRRRR R+
Sbjct: 13 RRRSRNVRVAAQTVTVAPKRRQRRRRRAGRK 43
Score = 36.8 bits (85), Expect = 0.063
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
+R RRR R R + +RR+RRRRR R+ +
Sbjct: 8 KRMPGRRRSRNVRVAAQTVTVAPKRRQRRRRRAGRKAN 45
Score = 36.8 bits (85), Expect = 0.070
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
+R RRR R R + +RR+RRRRR R+
Sbjct: 8 KRMPGRRRSRNVRVAAQTVTVAPKRRQRRRRRAGRK 43
Score = 36.8 bits (85), Expect = 0.071
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
+R RRR R R + +RR+RRRRR R+
Sbjct: 8 KRMPGRRRSRNVRVAAQTVTVAPKRRQRRRRRAGRK 43
Score = 36.4 bits (84), Expect = 0.074
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
+R RRR R R + +RR+RRRRR R+
Sbjct: 8 KRMPGRRRSRNVRVAAQTVTVAPKRRQRRRRRAGRK 43
Score = 34.5 bits (79), Expect = 0.31
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
+R RRR R R + +RR+RRRRR+G++
Sbjct: 8 KRMPGRRRSRNVRVAAQTVTVAPKRRQRRRRRAGRK 43
Score = 32.6 bits (74), Expect = 1.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
+R RRR R R + +RR+RRRRR K
Sbjct: 8 KRMPGRRRSRNVRVAAQTVTVAPKRRQRRRRRAGRK 43
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This family
includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 39.7 bits (91), Expect = 0.008
Identities = 21/81 (25%), Positives = 51/81 (62%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
++ +++ ++ ++ E E+K KK E+E ++ E + KK ++EE ++ K +++ +
Sbjct: 71 KKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQ 130
Query: 1005 KEEEEKKEEEEKEEEEKKRRR 1025
KE+E+K+ + +K + EKK+ +
Sbjct: 131 KEQEKKEADLKKLQAEKKKEK 151
Score = 38.1 bits (87), Expect = 0.022
Identities = 22/106 (20%), Positives = 60/106 (56%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE 972
++S +++ +++ + ++ ++ + RR ++R+ +EEE ++ K E+++ +
Sbjct: 71 KKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQ 130
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+E++KK+ K + +KK+E+ K +K ++ EK ++ +EE
Sbjct: 131 KEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVEEE 176
Score = 37.0 bits (84), Expect = 0.048
Identities = 21/72 (29%), Positives = 45/72 (62%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+ E+++ +K+ K E E+K K ++E ++ E E KK+ +EEE ++ + ++E +
Sbjct: 71 KKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQ 130
Query: 1017 EEEEKKRRRIRR 1028
+E+EKK +++
Sbjct: 131 KEQEKKEADLKK 142
Score = 36.6 bits (83), Expect = 0.068
Identities = 24/96 (25%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK 989
++ +++ +++ + ++ + E+E + E KK+ +E++ K+ K ++E +
Sbjct: 71 KKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQ 130
Query: 990 KEEEEEK---KKKKKEEEKEEEEKKEEEEKEEEEKK 1022
KE+E+++ KK + E++KE+ K E+ EK E+ KK
Sbjct: 131 KEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKK 166
Score = 33.5 bits (75), Expect = 0.60
Identities = 23/106 (21%), Positives = 51/106 (48%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
KK + + ++ + ++ ++ + RR ++R + + K E+E +
Sbjct: 71 KKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQ 130
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
K++EKK+ + +K + E K +K K ++ E+ +K KK EE+
Sbjct: 131 KEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVEEE 176
Score = 33.5 bits (75), Expect = 0.62
Identities = 19/74 (25%), Positives = 45/74 (60%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K ++ E+KK +++ ++ E ++K K EK+ E + KK+ +E+E ++ K E+E+
Sbjct: 69 KVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQER 128
Query: 1017 EEEEKKRRRIRRKR 1030
++E++++ K+
Sbjct: 129 IQKEQEKKEADLKK 142
Score = 33.5 bits (75), Expect = 0.69
Identities = 20/96 (20%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
++ +++ +++ + ++ ++ + + E E KK+ +++E ++ K ++ + +
Sbjct: 71 KKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQ 130
Query: 985 KEEKKKEEEEEK-KKKKKEEEKEEEEKKEEEEKEEE 1019
KE++KKE + +K + +KK+E+ + EK E+ EK ++
Sbjct: 131 KEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKK 166
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/106 (18%), Positives = 54/106 (50%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
++ ++K +++ + ++ ++ + RR ++R + ++ + + +
Sbjct: 71 KKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQ 130
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
+E+E+K+ + KK + E+KK+K K +K EK ++ ++ EEE
Sbjct: 131 KEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVEEE 176
Score = 32.7 bits (73), Expect = 1.2
Identities = 39/195 (20%), Positives = 83/195 (42%), Gaps = 12/195 (6%)
Query: 847 KEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRR------RRSGKEEEEKKKKEGGGGRR 900
K+ EKKK +++ + E E++ + RR +R+ +EEE K+ K +
Sbjct: 71 KKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQ 130
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR--RRRRRRRRSGKE 958
+ + KK ++ ++ +++ + + + + + ++ ++ RS
Sbjct: 131 KEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVEEEIVVKKVANDRSAAP 190
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E + + E+ ++ GK K+ KKK E E E+ E+ K EE +
Sbjct: 191 APEPKTPTNTPAEPAEQVQEITGKKNKKNKKKSESEATAAPASVEQVVEQPKVVTEEPHQ 250
Query: 1019 E----EKKRRRIRRK 1029
+ EKK ++ +RK
Sbjct: 251 QAAPQEKKNKKNKRK 265
Score = 31.6 bits (70), Expect = 2.7
Identities = 48/226 (21%), Positives = 91/226 (40%), Gaps = 18/226 (7%)
Query: 813 SRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKK---KKEEEEEGGEKEEEEG 869
+R ++R ++EE K+WK + R +KE+EKK+ KK + E+ EK +
Sbjct: 102 ARRAEAEAKKRAAQEEEHKQWKAE-----QERIQKEQEKKEADLKKLQAEKKKEKAVKAE 156
Query: 870 GGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
+ ++ EEE K+ R + + + + + ++
Sbjct: 157 KAEKAEKTKKASTPAPVEEEIVVKKVANDRSAAPAPEPKTPTNTPAEPAEQVQEITGKKN 216
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE-------EEEKKKEEKKKEEEEKKKKEGK 982
++ +++ + + EE +E+K K+ K+K E E +
Sbjct: 217 KKNKKKSESEATAAPASVEQVVEQPKVVTEEPHQQAAPQEKKNKKNKRKSESENVPAASE 276
Query: 983 TKKE---EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
T E E E +KK KK+++K E EK EE + E K ++
Sbjct: 277 TPVEPVVETTPPASENQKKNKKDKKKSESEKVVEEPVQAEAPKSKK 322
Score = 31.2 bits (69), Expect = 3.7
Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 3/131 (2%)
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
+ ++ +K K+ + +++ K + ++ + ++ + RR ++R + ++
Sbjct: 63 QPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQW 122
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKE---EEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+ + R ++ K+E + +K + EKKKE + EK +K KTKK EEE KK
Sbjct: 123 KAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPAPVEEEIVVKKV 182
Query: 1002 EEEKEEEEKKE 1012
++ E
Sbjct: 183 ANDRSAAPAPE 193
Score = 30.8 bits (68), Expect = 4.1
Identities = 36/216 (16%), Positives = 92/216 (42%), Gaps = 18/216 (8%)
Query: 807 ITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEE 866
+ +++ S ++ +++ + + E+K ++ + RR + E +K+ +EEE + + E+
Sbjct: 67 VEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQ 126
Query: 867 EEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRR 926
E + ++E++KKE + + +KK + + ++ + + ++
Sbjct: 127 E-----------------RIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKAST 169
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE-EKKKEEEEKKKKEGKTKK 985
++ R + + E E+ +E KK ++ KKK E +
Sbjct: 170 PAPVEEEIVVKKVANDRSAAPAPEPKTPTNTPAEPAEQVQEITGKKNKKNKKKSESEATA 229
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
E+ E+ K EE ++ +E++ K+ + K
Sbjct: 230 APASVEQVVEQPKVVTEEPHQQAAPQEKKNKKNKRK 265
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 39.5 bits (93), Expect = 0.009
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+E K K +K+ + KK + E+K+KE+E+ K KK+ + K ++++ E
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSE 433
Query: 1019 E 1019
E
Sbjct: 434 E 434
Score = 38.0 bits (89), Expect = 0.024
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 957 KEEEEEEKKKEEKK---KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
K E++ K KK K E+K+K++ K K +++ ++ + K++K EE
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 35.3 bits (82), Expect = 0.16
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+E K K KK K ++ K+ +KKE+EKE+ + K+ + KRR+
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 33.4 bits (77), Expect = 0.66
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 982 KTKKE-EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
KTK EKK + +K K+ E+KE+E++K + +K + K RRK
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 33.4 bits (77), Expect = 0.70
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+ R E + K EKK + KK + +K+EK+KE+ + KK+ + + + K
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKP 428
Query: 1012 EEEEKE 1017
+E
Sbjct: 429 SGTSEE 434
>gnl|CDD|169428 PRK08404, PRK08404, V-type ATP synthase subunit H; Validated.
Length = 103
Score = 36.7 bits (85), Expect = 0.009
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 963 EKKKEEKKKEEEE---KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
K KEE KK EEE K ++E + E+KKKE EEE KK +E EKE EE K + E+ E
Sbjct: 31 RKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEENFE 90
Query: 1020 E 1020
Sbjct: 91 T 91
Score = 34.8 bits (80), Expect = 0.037
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK---KKKKEEEKEEEEKKEE 1013
+ EE EK KEE KK + K++ K ++E KK EEE +K KKKKE E+E ++ EE
Sbjct: 14 EAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEE 73
Query: 1014 EEKEEEEKKRR 1024
EKE EE K +
Sbjct: 74 GEKEIEELKVK 84
>gnl|CDD|236394 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 39.7 bits (93), Expect = 0.009
Identities = 13/86 (15%), Positives = 28/86 (32%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
+RRR R RRR R R R R + + E+ ++ E
Sbjct: 8 HKRRRDAAAPADPRPRRRPRLGDAPAPRTARADSGATPRGRPRAGADREPTSEQLRDYER 67
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+ + + +++++ +
Sbjct: 68 WLDRAAAGQLDAQREQQCARLWFLVQ 93
Score = 39.7 bits (93), Expect = 0.011
Identities = 16/59 (27%), Positives = 22/59 (37%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK 969
+RRR R RRR R R R R R R + +E E+ + E+
Sbjct: 9 KRRRDAAAPADPRPRRRPRLGDAPAPRTARADSGATPRGRPRAGADREPTSEQLRDYER 67
Score = 38.5 bits (90), Expect = 0.024
Identities = 14/42 (33%), Positives = 15/42 (35%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
KRRR + R RRR R R R R R R
Sbjct: 9 KRRRDAAAPADPRPRRRPRLGDAPAPRTARADSGATPRGRPR 50
Score = 38.5 bits (90), Expect = 0.024
Identities = 14/52 (26%), Positives = 18/52 (34%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
+ +R R R RRR R R R R R R+G + E
Sbjct: 5 HAPHKRRRDAAAPADPRPRRRPRLGDAPAPRTARADSGATPRGRPRAGADRE 56
Score = 38.5 bits (90), Expect = 0.025
Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 894 EGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR--RRR 951
+RRR + R RR R R R R R R R +
Sbjct: 2 GPAHAPHKRRRDAAAPADPRPRRRPRLGDAPAPRTARADSGATPRGRPRAGADREPTSEQ 61
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEE 975
R + + + + ++E++
Sbjct: 62 LRDYERWLDRAAAGQLDAQREQQC 85
Score = 35.8 bits (83), Expect = 0.14
Identities = 14/56 (25%), Positives = 16/56 (28%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
R + RRR R RRR R R R R R + E
Sbjct: 1 RGPAHAPHKRRRDAAAPADPRPRRRPRLGDAPAPRTARADSGATPRGRPRAGADRE 56
Score = 34.7 bits (80), Expect = 0.35
Identities = 14/70 (20%), Positives = 21/70 (30%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
RRR R R R+ R R R R + R R R + +
Sbjct: 21 RPRRRPRLGDAPAPRTARADSGATPRGRPRAGADREPTSEQLRDYERWLDRAAAGQLDAQ 80
Query: 957 KEEEEEEKKK 966
+E++
Sbjct: 81 REQQCARLWF 90
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 39.7 bits (93), Expect = 0.009
Identities = 27/142 (19%), Positives = 53/142 (37%), Gaps = 15/142 (10%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR----------RRRRRRRRR 949
R +R R R RRR + +R ++ + + R RR +
Sbjct: 749 TRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGS 808
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE--KKKEEEEEKKKKKKEEEKEE 1007
R+ RS + +K +++K+ E ++ E K E +K + KK+ +KE
Sbjct: 809 RKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKET 868
Query: 1008 EEKKEEEEKEEEEKKRRRIRRK 1029
+ + E R+++
Sbjct: 869 ---IYLQSAQRVELAERQLQEL 887
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes MND1
from S. cerevisiae. The mnd1 protein forms a complex with
hop2 to promote homologous chromosome pairing and meiotic
double-strand break repair.
Length = 188
Score = 38.0 bits (89), Expect = 0.009
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK---EGKTKKEEKKKEEEEEKKKKK 1000
+ + R + + EE +++ E + + E+ KK + E +T+ E+ K+ E+E KK K
Sbjct: 64 LNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLK 123
Query: 1001 KEEEKEEE--EKKEEEEKEEEEKKRRRIRR 1028
E EK E+ ++ E+ KEE + + R
Sbjct: 124 AELEKYEKNDPERIEKLKEETKVAKEAANR 153
Score = 36.4 bits (85), Expect = 0.029
Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE-EEKKEEEEKEEEE 1020
+ K + + E+ +K+ +E K + E + + E+ KK +++ EE+ E E+ ++ EKE ++
Sbjct: 62 QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121
Query: 1021 KKR 1023
K
Sbjct: 122 LKA 124
Score = 35.7 bits (83), Expect = 0.060
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E+ +K+ EE K+ E + + K KK ++ EE E ++ K+ EKE ++ K E EK
Sbjct: 70 RLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEKY 129
Query: 1018 EE------EKKRRRIRRKR 1030
E+ EK + + +
Sbjct: 130 EKNDPERIEKLKEETKVAK 148
Score = 32.6 bits (75), Expect = 0.71
Identities = 20/87 (22%), Positives = 46/87 (52%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
+ + R + ++ ++R + + + E+ KK ++ EE + +E K ++E KK +
Sbjct: 64 LNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLK 123
Query: 993 EEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E +K +K + E+ E+ K+E + +E
Sbjct: 124 AELEKYEKNDPERIEKLKEETKVAKEA 150
Score = 31.4 bits (72), Expect = 1.7
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
+ + KT+ E+ KKE EE K++ + + + E+ KK EE EE + ++
Sbjct: 62 QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELK 113
Score = 31.1 bits (71), Expect = 2.0
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
+ + R + ++ ++R + + + + G+EE EE + E+ K+ E++ KK
Sbjct: 64 LNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK-- 121
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKE 1006
+ EK ++ + E+ +K KEE K
Sbjct: 122 LKAELEKYEKNDPERIEKLKEETKV 146
Score = 30.3 bits (69), Expect = 4.1
Identities = 9/54 (16%), Positives = 27/54 (50%)
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ K +K ++E ++ K++ E + + +K ++ +EE E++ + +
Sbjct: 60 PSQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELK 113
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is a
family of conserved fungal proteins of unknown function.
Length = 169
Score = 37.8 bits (88), Expect = 0.009
Identities = 13/65 (20%), Positives = 29/65 (44%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+ E K+E E +++ E + E +K+ E++ +++K +KE + K R
Sbjct: 68 ERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPR 127
Query: 1026 IRRKR 1030
+
Sbjct: 128 GGTQD 132
Score = 35.9 bits (83), Expect = 0.045
Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 946 RRRRRRRRRSGKEEE---EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
R R + + EEE + E +K+ + +K+K ++++K K+
Sbjct: 66 LRERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKD 125
Query: 1003 EEKEEEEKKE---------EEEKEEEEKKRR 1024
++ + EEE +++E +
Sbjct: 126 PRGGTQDVVDKSQASLDYGEEETQQQEAQSG 156
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of proteins
contain a band 4.1 domain (pfam00373), at their amino
terminus. This family represents the rest of these
proteins.
Length = 244
Score = 38.6 bits (90), Expect = 0.009
Identities = 22/115 (19%), Positives = 52/115 (45%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
R ++ R + RR ++ + + +EE + +KK ++ +EE
Sbjct: 5 REQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENR 64
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ ++E +EE+++ E E + + + EEE +K+E E + +++ R +
Sbjct: 65 RLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAH 119
Score = 35.1 bits (81), Expect = 0.14
Identities = 22/121 (18%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKK 970
R ++ R + RR ++ + ++ + E++ ++ +EE +
Sbjct: 5 REQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENR 64
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE-EKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+ EEE E + ++ E + +E + K +EE EK+E E ++ +++ E ++ R+
Sbjct: 65 RLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQ 124
Query: 1030 R 1030
Sbjct: 125 E 125
Score = 34.7 bits (80), Expect = 0.19
Identities = 23/126 (18%), Positives = 53/126 (42%), Gaps = 7/126 (5%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
R +++ R + RR ++ + ++ + ++ + EE
Sbjct: 5 REQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKAD---ELEE 61
Query: 961 EEEKKKEEKKKEEEEK----KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
E + +EE EEE+ + + T + K +EE E+K+ + ++ ++E E +E E+
Sbjct: 62 ENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHER 121
Query: 1017 EEEEKK 1022
+E
Sbjct: 122 ARQELL 127
Score = 32.4 bits (74), Expect = 1.0
Identities = 17/124 (13%), Positives = 41/124 (33%), Gaps = 4/124 (3%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
R ++ ++ EE ++ + ++ + ++ R
Sbjct: 5 REQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENR 64
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEE----EEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
R R R E EEE++K+E + + +++ +E + E ++
Sbjct: 65 RLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQ 124
Query: 991 EEEE 994
E E
Sbjct: 125 ELLE 128
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 39.3 bits (91), Expect = 0.009
Identities = 36/184 (19%), Positives = 68/184 (36%), Gaps = 6/184 (3%)
Query: 842 RRRGKKEEEKKKKKEEEEEGGEKEE--EEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGR 899
R+R + + +E+ E + EE GG G + + E K K+
Sbjct: 23 RKRAHDDLDDVLSSSSDEDNNENVDYAEESGGEGNEKSEEEKFKNPYRLEGKFKDEADRA 82
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
+ + R R + RR R ++ R RR R + E
Sbjct: 83 KIMAMTEIERESILFEREEEISKLMERRELAIRMEQQHRSSGCTDTRRSTRYEPLTSAAE 142
Query: 960 EEEEKKKEEKKKEEEE----KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E+++K E KK E E ++ + ++ K+ EE E+ +++ EE E+
Sbjct: 143 EKKKKLLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDIS 202
Query: 1016 KEEE 1019
+ ++
Sbjct: 203 RTDD 206
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 37.5 bits (88), Expect = 0.010
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
K+E K E+ +KK E K EKKK ++EE K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 36.4 bits (85), Expect = 0.023
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+++ GK+ E E E+ K+ +E + KKE K E+ E KK +K + K E++K
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAE--KKAEKAKAKAEKKK 89
Query: 1011 KEEEEKEEEEKKR 1023
K+EE K R
Sbjct: 90 A----KKEEPKPR 98
Score = 30.6 bits (70), Expect = 2.1
Identities = 11/35 (31%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 993 EEEKKKKKKEEEKEE-EEKKEEEEKEEEEKKRRRI 1026
++E K +K E+K E + K E++K ++E+ + R+
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 29.8 bits (68), Expect = 4.1
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
+ + ++ K+ E+ + K E+KK ++EE K +
Sbjct: 66 KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 29.4 bits (67), Expect = 5.6
Identities = 8/67 (11%), Positives = 26/67 (38%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
++ + ++ + + ++ + + K E+ + K +++K K
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAK 91
Query: 972 EEEEKKK 978
+EE K +
Sbjct: 92 KEEPKPR 98
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher plants
contain two giant open reading frames designated ycf1 and
ycf2. Although the function of Ycf1 is unknown, it is
known to be an essential gene.
Length = 832
Score = 39.6 bits (93), Expect = 0.010
Identities = 17/66 (25%), Positives = 36/66 (54%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
KE E E+++EE E E + +G +++E EE+ ++KE+ + E+ + E
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286
Query: 1017 EEEEKK 1022
+E++ +
Sbjct: 287 KEKKDE 292
Score = 39.2 bits (92), Expect = 0.014
Identities = 17/65 (26%), Positives = 38/65 (58%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+E + EE+++E + + + +TK ++++E E+ EEKE+ +K E+ +K E
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286
Query: 1021 KKRRR 1025
K+++
Sbjct: 287 KEKKD 291
Score = 37.7 bits (88), Expect = 0.034
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+ + EEE + + E + + K+++EG T+++ EE+E K ++ +K E K++
Sbjct: 230 SETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEK 289
Query: 1013 EEE 1015
++E
Sbjct: 290 KDE 292
Score = 37.3 bits (87), Expect = 0.048
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE EEE E + E + K+E + EE EEK+ K E+ ++ E +E++ E
Sbjct: 233 EEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDE 292
Query: 1018 E 1018
E
Sbjct: 293 E 293
Score = 37.3 bits (87), Expect = 0.050
Identities = 16/61 (26%), Positives = 33/61 (54%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+E EEE + E E + K+++ + +E+ EE++ K E+ + E KE++++
Sbjct: 233 EEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDE 292
Query: 1017 E 1017
E
Sbjct: 293 E 293
Score = 34.2 bits (79), Expect = 0.42
Identities = 15/67 (22%), Positives = 37/67 (55%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
KK +E + EE +++ + + + + K ++E++ +E+ E+KE+ +K E+ K
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKL 283
Query: 1024 RRIRRKR 1030
++ K+
Sbjct: 284 EILKEKK 290
Score = 33.8 bits (78), Expect = 0.62
Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 28/155 (18%)
Query: 856 EEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRS 915
E E++ G+ EE R R+ +R + +K K+R + R S
Sbjct: 528 ELEQDEGDNEENPPEDHDIRSRKAKRVVIFTDNKKNTDNTT----NEDEKEREVALIRYS 583
Query: 916 RRRRRRRR------RRRRR------------------RRRRRRRRRRRRRRRRRRRRRRR 951
++ RR R +RR R + + ++
Sbjct: 584 QQSDFRRDLIKGSMRAQRRKTVIWKLFQANVHSPLFLDRIEKTLFFSFDISELMKIKQIF 643
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
R K++E + E+K ++EEKK+K + +KE
Sbjct: 644 RNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
Score = 32.3 bits (74), Expect = 1.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
TKK ++ E EE +++ E E E K ++E+E ++ +
Sbjct: 223 TKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSL 266
Score = 31.5 bits (72), Expect = 2.7
Identities = 14/59 (23%), Positives = 27/59 (45%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
R E E K +++++ E+ +KE+ K E+ +K + KE++ EE
Sbjct: 235 REEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 30.0 bits (68), Expect = 8.5
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEE----KKKKEGKTKKEEKKKEEEEEKKKKK 1000
R E + K+E++ EE+ ++KE K E+ K E ++KK +
Sbjct: 235 REEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDE 292
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional regulation.
Length = 106
Score = 36.6 bits (85), Expect = 0.010
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 8/105 (7%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE-- 986
R R RR R +EE++ + E + +K+ + +
Sbjct: 2 SPRLERSRRSRDDYDEEEDEDMDDFIEDDDEEDDYDRDEIWAMFNKGRKRYAYRDDDDDD 61
Query: 987 ------EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+EEE + + E EEE+ E+EE+ E+ ++R+
Sbjct: 62 DDMEAGGADIQEEERRSARLARLEDREEERLEKEEEREKRARKRK 106
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 38.9 bits (91), Expect = 0.010
Identities = 34/177 (19%), Positives = 76/177 (42%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
K +E + K+K+ +EE E +E+ +R + ++ +E R R +
Sbjct: 7 KLDELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDE 66
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
+ + +R + + R+ R + +R R + R + E++++
Sbjct: 67 INEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTS 126
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
++E E +K + K+ E K+ EE +K K+ + + +E KK+ E E+ ++
Sbjct: 127 VLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQE 183
Score = 38.1 bits (89), Expect = 0.016
Identities = 25/141 (17%), Positives = 61/141 (43%)
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
+ E ++K+ + + +R + R+ + +R + R R + + R R
Sbjct: 10 ELELKRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINE 69
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
+ + +R + +E +K+ + KE+ + G++ K +++ E EKK++
Sbjct: 70 EVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLT 129
Query: 1005 KEEEEKKEEEEKEEEEKKRRR 1025
EEE + ++ KE ++
Sbjct: 130 PEEERELVQKIKELRKELEDA 150
Score = 37.0 bits (86), Expect = 0.037
Identities = 27/126 (21%), Positives = 56/126 (44%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
+RK+ + +R R+ +R + R R + + R R EE +E
Sbjct: 14 KRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQE 73
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
K+K ++ + ++ +KE + KE++ + + K E E E EKK++ E++
Sbjct: 74 LKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEE 133
Query: 1023 RRRIRR 1028
R +++
Sbjct: 134 RELVQK 139
Score = 33.1 bits (76), Expect = 0.63
Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 17/215 (7%)
Query: 817 RGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRR 876
+R + + ++ + + R R + EE ++ KE+ +E K +E
Sbjct: 37 SELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQE--------- 87
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
R E ++K+ E G R + +R R + ++ R ++ +
Sbjct: 88 ----LRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKEL 143
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE----KKKEE 992
R+ ++ + + K E +E KKK + E+ ++ E + EE ++ +
Sbjct: 144 RKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEAD 203
Query: 993 EEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
E K+ + EE E KK +E EE + +R
Sbjct: 204 ELRKEADELHEEFVELSKKIDELHEEFRNLQNELR 238
Score = 32.7 bits (75), Expect = 0.95
Identities = 30/183 (16%), Positives = 71/183 (38%), Gaps = 10/183 (5%)
Query: 848 EEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKR 907
K E E + + +EE + ++E K+ E R K R
Sbjct: 2 LAMLDKLDELELKRKQLKEEIE----------ELKEKRDELRKEASELAEKRDELNAKVR 51
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
+ + R R + + +R + + R+ R + + + K
Sbjct: 52 ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKS 111
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
+++ E +KK++ E+++E ++ K+ +KE E ++ +E E+ +E + + ++
Sbjct: 112 LEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELK 171
Query: 1028 RKR 1030
+K
Sbjct: 172 KKA 174
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 39.4 bits (92), Expect = 0.010
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K E E E+ K+ E +K+ + +K+ +K+ + E +KK+E K EE K E EK
Sbjct: 101 KLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEK 160
Query: 1017 EEEEK 1021
+ EE
Sbjct: 161 KLEES 165
Score = 38.6 bits (90), Expect = 0.016
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
+ +R + R +++ S EE+ +KKE+K E+ K+ E + E K E E
Sbjct: 49 KEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELL 108
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEE 1020
+K +E + E++ +E KE ++
Sbjct: 109 NLEKDKELELLEKELDELSKELQK 132
Score = 37.9 bits (88), Expect = 0.023
Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT 983
+ +R + R +++ + + +++ E+ K+ E ++E K +
Sbjct: 49 KEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELL 108
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEE--EEKKEEEEKEEEEKKRRRIRRK 1029
E+ K+ E EK+ + +E ++ + E EK+ E K +
Sbjct: 109 NLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKF 156
Score = 35.2 bits (81), Expect = 0.16
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEE--------EKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
++R + EE K + EKK EE E++ E E K+ EE+ E K +
Sbjct: 142 EKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILK 201
Query: 1003 EEKEEEEKKEEEEKEEEEK 1021
+ K E ++ + E +
Sbjct: 202 KLKRRAELGSQQVQGEALE 220
Score = 34.8 bits (80), Expect = 0.23
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEG---KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
KE E EK+ +E KE +++ + + K+E K EE + + +KK EE E E+++
Sbjct: 114 KELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKF 173
Query: 1014 EEKEEE 1019
EE+ E
Sbjct: 174 EEQLHE 179
Score = 32.9 bits (75), Expect = 0.87
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTK---KEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
E EKK+E K EE K + E K + + E++K EE+ + E KE EE++E
Sbjct: 136 NTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRES 195
Query: 1014 EEKEEEEKKRR 1024
+ ++ KRR
Sbjct: 196 KWAILKKLKRR 206
Score = 32.5 bits (74), Expect = 1.1
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE-KEEEEKKE 1012
S + +++ + E +K+ E K +E + EKK EE E +++K EE+ E E
Sbjct: 126 LSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLE 185
Query: 1013 EEEKEEEEKKRRRIRRK 1029
+E EE+ + + I +K
Sbjct: 186 FKENEEQRESKWAILKK 202
Score = 31.3 bits (71), Expect = 3.1
Identities = 17/74 (22%), Positives = 38/74 (51%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
K+ E+E++ + EE EK+ E + + KK+E + +++ ++KE++ E+
Sbjct: 29 YKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQI 88
Query: 1016 KEEEEKKRRRIRRK 1029
K+ E + I +
Sbjct: 89 KQFELALQDEIAKL 102
Score = 30.6 bits (69), Expect = 5.2
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EE EK+ EK+ + KKKE +E+ +++E+K ++ ++ E ++E K
Sbjct: 42 NTLEEFEKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAK 101
Query: 1017 EEEEKK 1022
E +
Sbjct: 102 LEALEL 107
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 38.2 bits (89), Expect = 0.011
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
K+ ++K+ K K+KK++K+K EEEKK + +++ EE E + +E + +
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQ 107
Score = 33.6 bits (77), Expect = 0.30
Identities = 15/75 (20%), Positives = 37/75 (49%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
R R ++ ++ E+ + ++ KK+ T + ++ +KK K+K E+E
Sbjct: 21 RAHVRSTTESVDKVRDDIFPEDIEIPSPKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEE 80
Query: 1007 EEEKKEEEEKEEEEK 1021
++ + ++++ EE E
Sbjct: 81 KKPESDDDKTEENEN 95
Score = 31.7 bits (72), Expect = 1.3
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
++ +++R R+ ++ ++ KE+ EE+KK E ++ E+ + EE +
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENEN-DPDNNEESGDSQ 107
Query: 993 EEEKKKKKKEEEKEEE 1008
E + + E++
Sbjct: 108 ESASANSLSDIDNEDD 123
Score = 31.3 bits (71), Expect = 1.7
Identities = 13/78 (16%), Positives = 38/78 (48%)
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
++ +++R R+ ++ ++K KE+ +EE++ + + KT++ E + EE ++
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
Query: 1002 EEEKEEEEKKEEEEKEEE 1019
+ E+ ++
Sbjct: 109 SASANSLSDIDNEDDMDD 126
Score = 30.1 bits (68), Expect = 4.1
Identities = 11/75 (14%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE----EEEKKKKE 980
++ +++R R+ ++ +++ + + K+ E ++ K EE + + EE +E
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
Query: 981 GKTKKEEKKKEEEEE 995
+ + E++
Sbjct: 109 SASANSLSDIDNEDD 123
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one of
the members is annotated as an EF-hand family protein.
Length = 349
Score = 39.0 bits (91), Expect = 0.012
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
+ S + SR + + RR+ ++ + R E +E+E K++
Sbjct: 234 QESHKSSSRTYLDQENISAGEENLKPTRRKLPPSTKKWESLVKFLR---TERKEKEAKEQ 290
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
++KKE E++KKK+ + + K++ E + +K +EE KE+ K +EEKE E++ + +
Sbjct: 291 QEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQLAKLRKEEKEREKEYEQEL 349
Score = 33.6 bits (77), Expect = 0.58
Identities = 26/85 (30%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
+ RR+ S K+ E K ++KE+E K+++E K + E++KK+++E K K+ E
Sbjct: 258 KPTRRKLPPSTKKWESLVKFLRTERKEKEAKEQQEKK-ELEQRKKKKKEMAPKVKQRFEA 316
Query: 1006 EEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ +K +EE++E+ K R+ ++R
Sbjct: 317 NDPAQKLQEERKEQLAKLRKEEKER 341
Score = 33.2 bits (76), Expect = 0.72
Identities = 26/122 (21%), Positives = 47/122 (38%), Gaps = 22/122 (18%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE---- 986
+ RR R + + ++ E EE+KK +K ++E K K
Sbjct: 68 EQNEERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSEREPKKFKAKPVP 127
Query: 987 --------EKKKEEEEEKKKKKKEEEKEEE----------EKKEEEEKEEEEKKRRRIRR 1028
+ K +EEE K+K + + +E K E +E+ ++KKR + +
Sbjct: 128 KSIYIPLLKDKMQEEELKRKIRVQMRAQELLQSSRLPPRMAKHEAQERLTKKKKRGQKKS 187
Query: 1029 KR 1030
K
Sbjct: 188 KY 189
Score = 30.5 bits (69), Expect = 4.1
Identities = 42/227 (18%), Positives = 89/227 (39%), Gaps = 37/227 (16%)
Query: 822 RRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEK----------------- 864
R +KK+E+K R+ K EEE K +++EEE K
Sbjct: 14 REKKKREKKSI----------RQSKLEEELNKLEKKEEEAECKKKFKANPVPASVKLPLY 63
Query: 865 ----EEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRR 920
E+ E RR R K +K R ++K + R S R
Sbjct: 64 EEIMEQNE------ERREEVREKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSERE 117
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
++ + + + + + + +R+ R + +E + + + + E +++
Sbjct: 118 PKKFKAKPVPKSIYIPLLKDKMQEEELKRKIRVQMRAQELLQSSRLPPRMAKHEAQERLT 177
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
K K+ +KK + +++ K K+ + + EK E+ +++ +K++ R
Sbjct: 178 KKKKRGQKKSKYKKKTFKPKRAKSIPDFEKLHEKFQKQLAEKKKSKR 224
Score = 30.1 bits (68), Expect = 6.2
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 14/70 (20%)
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK--------------EEEEKEEEE 1020
K++K+ + KK ++ + EEE K +K+EE+ E +KK EE E+ E
Sbjct: 12 TKREKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKANPVPASVKLPLYEEIMEQNE 71
Query: 1021 KKRRRIRRKR 1030
++R +R K
Sbjct: 72 ERREEVREKS 81
Score = 30.1 bits (68), Expect = 6.6
Identities = 18/93 (19%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK-------------------EEEEEKK 997
++++ E+K + K EEE K ++ + + E KKK E+ EE++
Sbjct: 15 EKKKREKKSIRQSKLEEELNKLEKKEEEAECKKKFKANPVPASVKLPLYEEIMEQNEERR 74
Query: 998 KKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
++ +E+ K ++ E +++++ R
Sbjct: 75 EEVREKSKAILLSSQKPFSFYEREEQKKAILPR 107
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 39.5 bits (92), Expect = 0.012
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
EEK+++ K KEE ++E + E +++++EEEK E + K E EK+R +++
Sbjct: 252 EEKRRELEKLAKEEAERERQAE-EQRRREEEKAAMEADRAQAKAEVEKRREKLQ 304
Score = 35.6 bits (82), Expect = 0.16
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
+RR + KEE E E++ EE+++ EEEK E + + K E E+ ++K
Sbjct: 254 KRRELEKLAKEEAERERQAEEQRRREEEKAAMEA--DRAQAKAEVEKRREK 302
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 39.3 bits (92), Expect = 0.012
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
++ E + KK +K K + ++ KE E + +K E +K EE +E
Sbjct: 358 SKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIRE 417
Query: 1013 EEEKEEEEKKRRRIRRKR 1030
E +E K +++ R+K+
Sbjct: 418 ELIEEGLLKSKKKKRKKK 435
Score = 35.8 bits (83), Expect = 0.12
Identities = 16/76 (21%), Positives = 36/76 (47%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
R ++ + K + ++ + KE + ++ + K+ EE +++ EE +
Sbjct: 367 RYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLK 426
Query: 1008 EEKKEEEEKEEEEKKR 1023
+KK+ ++KE EK R
Sbjct: 427 SKKKKRKKKEWFEKFR 442
Score = 35.1 bits (81), Expect = 0.24
Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE-----KKKEEEEE----- 995
+ R +E + E K + + + KK K K + + E +E
Sbjct: 338 KSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYE 397
Query: 996 --KKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K +K E K+ E+ EE EE K ++ +RK+
Sbjct: 398 SAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKK 434
Score = 32.4 bits (74), Expect = 1.4
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+E+ ++ K + E +KK E+E KK + K E++E+E ++ E+ EE +K
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 31.6 bits (72), Expect = 2.3
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
++K E ++ K+ + +K+ +K+ ++ E K +K+E+E EE EK EE +++
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 30.8 bits (70), Expect = 3.9
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
++ + K E +K+ E+E KK + + EK+E+E +E E+ EE +++
Sbjct: 276 ERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 30.4 bits (69), Expect = 5.0
Identities = 16/74 (21%), Positives = 37/74 (50%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
R ++ ++ + + R+ S +E + + E+ E KK + ++E ++ +
Sbjct: 367 RYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLK 426
Query: 995 EKKKKKKEEEKEEE 1008
KKKK+K++E E+
Sbjct: 427 SKKKKRKKKEWFEK 440
Score = 30.4 bits (69), Expect = 5.9
Identities = 15/74 (20%), Positives = 37/74 (50%)
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
R ++ ++ + + R+ + +E + K E+ + KK + +EE +E +
Sbjct: 367 RYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLK 426
Query: 996 KKKKKKEEEKEEEE 1009
KKKK+++++ E+
Sbjct: 427 SKKKKRKKKEWFEK 440
Score = 30.1 bits (68), Expect = 7.4
Identities = 12/51 (23%), Positives = 33/51 (64%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+EK +++ + + +++ E++ KK + + +++E++ EE EK EE +++
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
>gnl|CDD|109609 pfam00559, Vif, Retroviral Vif (Viral infectivity) protein. Human
immunodeficiency virus type 1 (HIV-1) Vif is required
for productive infection of T lymphocytes and
macrophages. Virions produced in the absence of Vif have
abnormal core morphology and those produced in primary T
cells carry immature core proteins and low levels of
mature capsid.
Length = 192
Score = 37.8 bits (88), Expect = 0.012
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
RR R ++ RR R R +R RRRR++ G
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQGGS 192
Score = 37.0 bits (86), Expect = 0.024
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
RR R ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQGG 191
Score = 36.2 bits (84), Expect = 0.044
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
RR R ++ RR R R +R RRRR++ S
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQGGS 192
Score = 35.8 bits (83), Expect = 0.048
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
+RR R ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 35.8 bits (83), Expect = 0.049
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
RR R ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 35.8 bits (83), Expect = 0.049
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
RR R ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 35.8 bits (83), Expect = 0.051
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
RRSR ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 35.8 bits (83), Expect = 0.059
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
S RR R ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 35.5 bits (82), Expect = 0.075
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
R R + ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 35.1 bits (81), Expect = 0.089
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
+R R +++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 35.1 bits (81), Expect = 0.089
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R R ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 35.1 bits (81), Expect = 0.100
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
+RR R ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 35.1 bits (81), Expect = 0.11
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
RR R + +++ R R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 34.3 bits (79), Expect = 0.17
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
R R ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 34.3 bits (79), Expect = 0.19
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
S RR ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 33.9 bits (78), Expect = 0.22
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
RR + ++ RR R R +R RRRR++
Sbjct: 156 NRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 33.9 bits (78), Expect = 0.26
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
RR + ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 33.5 bits (77), Expect = 0.31
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
R R ++ RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 33.5 bits (77), Expect = 0.34
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
R+ R + + RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 32.8 bits (75), Expect = 0.51
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
++ R + RR R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 32.0 bits (73), Expect = 1.1
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
RR + + ++ R R R +R RRRR++
Sbjct: 155 SNRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 31.6 bits (72), Expect = 1.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
RR R + RR + R R +R RRRR++
Sbjct: 156 NRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
Score = 29.7 bits (67), Expect = 6.2
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 894 EGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
KK RR R R +R RRRR++
Sbjct: 156 NRRSRGETPTTKKLRRDNGRGLRMAKRHRRRRQQG 190
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 38.9 bits (91), Expect = 0.013
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 1/129 (0%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
RR KK S+ + R+ + R + + + + K EE
Sbjct: 32 RRIKKGGFLGLLFSKTAVEVTKLAAVDSELRKFQTREAAKVKDAEAQLLKDPAEKKREER 91
Query: 962 E-EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+ KK E E+K +E K EE + +EK ++ EE E +++ +
Sbjct: 92 KAAKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFVALYKQEIQSP 151
Query: 1021 KKRRRIRRK 1029
+ I
Sbjct: 152 TRLNLINEL 160
Score = 38.5 bits (90), Expect = 0.017
Identities = 19/137 (13%), Positives = 47/137 (34%), Gaps = 2/137 (1%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
++ + GG K + R+ + R + + + + ++R
Sbjct: 32 RRIKKGGFLGLLFSKTAVEVTK--LAAVDSELRKFQTREAAKVKDAEAQLLKDPAEKKRE 89
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R+ + K E E K +E ++ ++ + ++EK E E+ + ++E +
Sbjct: 90 ERKAAKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFVALYKQEIQ 149
Query: 1011 KEEEEKEEEEKKRRRIR 1027
E R +
Sbjct: 150 SPTRLNLINELLRAGLE 166
Score = 35.4 bits (82), Expect = 0.16
Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK---KKEEEEKKKKEGKTKKEEK 988
RR ++ + + + + E + + E K E + K + K+EE+
Sbjct: 32 RRIKKGGFLGLLFSKTAVEVTKLAAVDSELRKFQTREAAKVKDAEAQLLKDPAEKKREER 91
Query: 989 K---KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K K E +++ ++ ++ +E E +EK R +
Sbjct: 92 KAAKKIERSTPSLIERKTQEVKDSGEEIAEMMRDEKVPIRELEEI 136
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 39.3 bits (91), Expect = 0.013
Identities = 18/70 (25%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E ++K E K +++ K+ + K+ + + +E++ KKE+E+E+ +K + +E
Sbjct: 1009 PECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEM 1068
Query: 1021 KKRRRIRRKR 1030
K+R +++KR
Sbjct: 1069 AKKR-LKKKR 1077
Score = 39.0 bits (90), Expect = 0.015
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E EK + + + +E K +E K + E ++ +EEE KK+KE E+ + + KE
Sbjct: 1009 PECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEM 1068
Query: 1019 EEKKRRRIR 1027
+K+ ++ R
Sbjct: 1069 AKKRLKKKR 1077
Score = 33.9 bits (77), Expect = 0.60
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE ++ E ++EE +KK+E + E +++ + E+K EEK + E++ + +
Sbjct: 630 NEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRS 689
Query: 1018 EEE 1020
E E
Sbjct: 690 EFE 692
Score = 32.8 bits (74), Expect = 1.1
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
R + + R KE +++++KE + + K+++ GK K+KE E+ +K +
Sbjct: 1011 CREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGK-----KEKEREQRIRKTIHDNY 1065
Query: 1005 KEEEEKK 1011
KE +K+
Sbjct: 1066 KEMAKKR 1072
Score = 32.0 bits (72), Expect = 2.0
Identities = 16/66 (24%), Positives = 35/66 (53%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
R + + R + R +EE+E + ++ KEEE KK++ + ++ K + ++ K
Sbjct: 1011 CREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAK 1070
Query: 1000 KKEEEK 1005
K+ ++K
Sbjct: 1071 KRLKKK 1076
Score = 31.2 bits (70), Expect = 3.3
Identities = 17/70 (24%), Positives = 33/70 (47%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+ + E EE + E EE + + E+ ++EE + + EE+ + EKK+
Sbjct: 610 EENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKD 669
Query: 1013 EEEKEEEEKK 1022
+ EE++K
Sbjct: 670 VDWYTEEKRK 679
Score = 31.2 bits (70), Expect = 3.4
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK 988
R + + R + R + + + R S + +EEE K+EK++E+ +K K+ K
Sbjct: 1011 CREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAK 1070
Query: 989 KK 990
K+
Sbjct: 1071 KR 1072
Score = 31.2 bits (70), Expect = 3.9
Identities = 13/66 (19%), Positives = 30/66 (45%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
R + + R + R + + + R +R + GK+E+E E++ + + ++ K
Sbjct: 1011 CREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAK 1070
Query: 980 EGKTKK 985
+ KK
Sbjct: 1071 KRLKKK 1076
Score = 30.9 bits (69), Expect = 4.1
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK-- 1016
+++E+ E+ + EE + +++ E EE + E E+EE +K+EE +
Sbjct: 597 QDDEKGNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGN 656
Query: 1017 -EEEEK 1021
E EE+
Sbjct: 657 FELEER 662
Score = 30.5 bits (68), Expect = 6.6
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK-KEEEEKEEEE 1020
+++ + E E + K E K + +E K ++++E E ++ KEEE ++E+
Sbjct: 992 DKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEK 1051
Query: 1021 KKRRRIRRKR 1030
++ +RIR+
Sbjct: 1052 EREQRIRKTI 1061
Score = 30.1 bits (67), Expect = 8.0
Identities = 16/67 (23%), Positives = 35/67 (52%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
R + + R + R + + + E + K+EE K+E+E++++ KT + K+ +
Sbjct: 1011 CREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAK 1070
Query: 994 EEKKKKK 1000
+ KKK+
Sbjct: 1071 KRLKKKR 1077
Score = 30.1 bits (67), Expect = 9.1
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 8/82 (9%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK---EEEEEKKKKKKEEEK---EEEE 1009
G E+ E+++ + EE + +E + E E E+ +KKEE + E EE
Sbjct: 602 GNFEDLEDEENSSDNEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEE 661
Query: 1010 KKEEEEKEEE--EKKRRRIRRK 1029
+ + E+K+ + +++R+I +
Sbjct: 662 RGDPEKKDVDWYTEEKRKIEEQ 683
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This family
includes the radial spoke head proteins RSP4 and RSP6
from Chlamydomonas reinhardtii, and several eukaryotic
homologues, including mammalian RSHL1, the protein
product of a familial ciliary dyskinesia candidate gene.
Length = 481
Score = 38.9 bits (91), Expect = 0.014
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 31/89 (34%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEG--------------------------KTKKEEKKKE 991
EEEEEE+++ ++ E EE EG E+K E
Sbjct: 290 EEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPEQKDE 349
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
EEE+ ++EE+EEEE++ EE + EE
Sbjct: 350 EEEQ-----EDEEEEEEEEEPEEPEPEEG 373
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component TAF4
family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 38.1 bits (89), Expect = 0.014
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
R RR K + E + + ++ + + K K+EE+++ E + + E+ ++
Sbjct: 93 RHRRDGIKSDPNYEIRSDVRR----QLRFLAQKQKEEEERRVERRRELGLEDPEQLRLKQ 148
Query: 1010 KKEEEEKEEEEKKRRR 1025
K +EE+K E E+ R R
Sbjct: 149 KAKEEQKAESEETRHR 164
Score = 37.4 bits (87), Expect = 0.023
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
R RR + R RR + +++K++EE++ E + E E+
Sbjct: 93 RHRRDGIKSDPNYEIRSDVRRQLRFLAQKQKEEEERRVERRRELGLE---------DPEQ 143
Query: 994 EEKKKKKKEEEKEEEEK 1010
K+K KEE+K E E+
Sbjct: 144 LRLKQKAKEEQKAESEE 160
Score = 34.3 bits (79), Expect = 0.28
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE---EKKKEEEEKKKKEGKTKK 985
R RR + R RR+ R + K++EEEE++ E E E+ E+ + + K K+
Sbjct: 93 RHRRDGIKSDPNYEIRSDVRRQLRFLAQKQKEEEERRVERRRELGLEDPEQLRLKQKAKE 152
Query: 986 EEKKKEEEEEKK 997
E+K + EE +
Sbjct: 153 EQKAESEETRHR 164
>gnl|CDD|222928 PHA02778, PHA02778, major capsid L1 protein; Provisional.
Length = 503
Score = 38.6 bits (91), Expect = 0.014
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRR 926
G RRR R+++R+S S R +RRRR+R
Sbjct: 475 GLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 37.9 bits (89), Expect = 0.029
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRR 925
G RRR RR+KR+ + SR +RRRR+R
Sbjct: 475 GLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 36.3 bits (85), Expect = 0.077
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
+ RRR RRR+R+ R +RRRR+R
Sbjct: 474 AGLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.097
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
RRR RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.097
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
RRR RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.097
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
RRR RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.097
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
RRR RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.097
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
RRR RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.097
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
RRR RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.097
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
RRR RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.097
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
RRR RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.097
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RRR RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.097
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
RRR RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.10
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
+ RR RRR+R+ R +RRRR+R
Sbjct: 474 AGLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 35.9 bits (84), Expect = 0.11
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 898 GRR-------RRRRKKRRRSRRRRSRRRRRRRRRRRR 927
GR+ RRR ++R+R S R +RRRR+R
Sbjct: 467 GRKFLFQAGLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 34.8 bits (81), Expect = 0.22
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
RR RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 34.8 bits (81), Expect = 0.26
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
R R RRR+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 34.4 bits (80), Expect = 0.32
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
RR RRR R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 34.4 bits (80), Expect = 0.36
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRR 924
G RR RRRK++ S +RRRR+R
Sbjct: 475 GLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 33.6 bits (78), Expect = 0.54
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
R R RR +R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 33.6 bits (78), Expect = 0.58
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRRR 923
G R RRR++K S RS +RRRR+R
Sbjct: 475 GLRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 33.3 bits (77), Expect = 0.71
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
RR R R+R+ R +RRRR+R
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
Score = 33.3 bits (77), Expect = 0.71
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRS 955
RRR RRR+R+ R +RRRR
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRK 502
Score = 32.5 bits (75), Expect = 1.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
RRR RRR+R+ R +RRR +
Sbjct: 476 LRRRTRRRKRKSTSSSSSRSTKRRRRKR 503
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein). This
family consists of several brain acid soluble protein 1
(BASP1) or neuronal axonal membrane protein NAP-22. The
BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 37.9 bits (87), Expect = 0.015
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+ EEE K+ EE + E + KE K +K +K ++ K ++KE EKE KEE
Sbjct: 28 AATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDA-QDTANKTEEKEGEKEAAAAKEEA 86
Query: 1015 EKEEEEK 1021
K E EK
Sbjct: 87 PKAEPEK 93
Score = 33.3 bits (75), Expect = 0.46
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E+ +++ KK E EEE KE + + + E +E K++K +++ ++ K EE++
Sbjct: 16 EKAKDKDKKAEGAATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEG 75
Query: 1018 EEEK 1021
E+E
Sbjct: 76 EKEA 79
Score = 29.8 bits (66), Expect = 6.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
K+ ++ K EEK+ E+E KE K E +K E E K + + E+E
Sbjct: 61 KDAQDTANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPKASDPEQE 113
Score = 29.8 bits (66), Expect = 6.9
Identities = 14/63 (22%), Positives = 32/63 (50%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+ + +E+ +++ + K EE+E +K+ K+E K E E+ + + + E + E
Sbjct: 52 KEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAEPPKASDPE 111
Query: 1013 EEE 1015
+E
Sbjct: 112 QEP 114
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 39.2 bits (91), Expect = 0.015
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE-EEEEKKKKKKEEEKE 1006
R RR + +EK E ++++K + E K K +KK+E + KE+ +
Sbjct: 4 RNRREANINNNDRMQEKDDE----KQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQ 59
Query: 1007 EEEKKEEEEKE 1017
E K +E K+
Sbjct: 60 ENLKIADEVKK 70
Score = 35.3 bits (81), Expect = 0.21
Identities = 18/88 (20%), Positives = 40/88 (45%)
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
R RR R + + ++++ + KE+ ++EE + +E+ +E +
Sbjct: 4 RNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLK 63
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
+ K+ KEE ++ E K +EE ++
Sbjct: 64 IADEVKKSTKEESKQLLEVLKTKEEHQK 91
Score = 34.5 bits (79), Expect = 0.36
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEE 974
R RR R + + ++ ++ R + + ++ + + KE+ +E
Sbjct: 3 YRNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENL 62
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE----EEKEEEEKKRRRIRRK 1029
+ + K+ KEE K+ E K K++ ++E + E ++ E KE KK I+ +
Sbjct: 63 KIADEVKKSTKEESKQLLEVLKTKEEHQKEIQYEILQKTIPSFEPKESILKKLEDIKPE 121
>gnl|CDD|223898 COG0828, RpsU, Ribosomal protein S21 [Translation, ribosomal
structure and biogenesis].
Length = 67
Score = 35.0 bits (81), Expect = 0.015
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RR KR+ + R + R + +R+R++ R+R+ +R R+ ++R
Sbjct: 17 RRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQRE 67
Score = 33.1 bits (76), Expect = 0.065
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
RR ++K + R + R + +R+R++ R+R+ +R R+ ++R
Sbjct: 17 RRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQRE 67
Score = 32.3 bits (74), Expect = 0.13
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R+ +R+ + R + R + +R+R++ R+R+ +R R+ ++R
Sbjct: 17 RRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQRE 67
Score = 30.8 bits (70), Expect = 0.48
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
RR +R+ + R + R + +R+R++ R+R+ +R R+ +E
Sbjct: 17 RRFKRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQRE 67
Score = 29.6 bits (67), Expect = 1.2
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
+ R +K R+R+ R+R+ +R R+ ++R
Sbjct: 33 KEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQRE 67
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 38.5 bits (90), Expect = 0.015
Identities = 9/53 (16%), Positives = 25/53 (47%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
R K+ + + + + + + R ++ R R RR+++ ++ + RR +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 37.0 bits (86), Expect = 0.051
Identities = 10/53 (18%), Positives = 25/53 (47%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R +KR + + + + + R ++ R R RR+++ ++ + RR +
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 36.2 bits (84), Expect = 0.078
Identities = 9/49 (18%), Positives = 23/49 (46%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
+R + K + + + R ++ R R RR+++ ++ + RR +
Sbjct: 347 EKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 35.8 bits (83), Expect = 0.097
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 876 RRRRRRRSGKEEEEKKKKE-GGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
S +EE EK+ ++ + + K R ++ R R RR+++ ++ + RR
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Query: 935 RR 936
+
Sbjct: 394 QN 395
Score = 35.8 bits (83), Expect = 0.12
Identities = 16/62 (25%), Positives = 29/62 (46%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
S +EE E+ +K ++K + K K + KKE + ++K+KK K E +
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Query: 1008 EE 1009
+
Sbjct: 394 QN 395
Score = 35.5 bits (82), Expect = 0.13
Identities = 9/63 (14%), Positives = 25/63 (39%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
G + +R + + + + + R ++ R R RR+++ ++ + RR
Sbjct: 333 FSGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRG 392
Query: 956 GKE 958
+
Sbjct: 393 LQN 395
Score = 33.9 bits (78), Expect = 0.38
Identities = 9/63 (14%), Positives = 25/63 (39%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R +R + + + + + + R ++ R R RR+++ ++ + R G
Sbjct: 333 FSGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRG 392
Query: 957 KEE 959
+
Sbjct: 393 LQN 395
Score = 32.8 bits (75), Expect = 1.1
Identities = 8/49 (16%), Positives = 19/49 (38%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRR 923
+R + + + K K + R R +R++ ++ RR +
Sbjct: 347 EKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 31.6 bits (72), Expect = 2.0
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 955 SGKEEEEEEKKKEEKKKEE-EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
SG+ + +++ EK+ E+ +EK K K E+ K+E + ++KK+E+K + E++
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Query: 1014 EE 1015
+
Sbjct: 394 QN 395
Score = 31.2 bits (71), Expect = 3.1
Identities = 7/63 (11%), Positives = 23/63 (36%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R +R + + + + + + R ++ R R RR+++ ++ +
Sbjct: 333 FSGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRG 392
Query: 958 EEE 960
+
Sbjct: 393 LQN 395
Score = 30.8 bits (70), Expect = 4.0
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
R +R + K + K K E+ K+E + + KK+EKK + E
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRY---RRKKKEKKAKSER 390
Query: 995 EKKKK 999
+
Sbjct: 391 RGLQN 395
Score = 30.1 bits (68), Expect = 6.1
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K+ EK KE+ + K K E ++E K++E+K + R +
Sbjct: 348 KRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQ 394
Score = 30.1 bits (68), Expect = 7.0
Identities = 12/62 (19%), Positives = 31/62 (50%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
R + ++ +E+ K K K E +KK++ G+ ++++K+K+ + E++
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Query: 1000 KK 1001
+
Sbjct: 394 QN 395
Score = 30.1 bits (68), Expect = 7.3
Identities = 9/62 (14%), Positives = 24/62 (38%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
R +R + + + + + + R ++ R R RR++ K+ + E +
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Query: 967 EE 968
+
Sbjct: 394 QN 395
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 38.7 bits (90), Expect = 0.018
Identities = 30/144 (20%), Positives = 64/144 (44%), Gaps = 12/144 (8%)
Query: 808 TQIRLSRNR-RGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEE 866
Q +SR R RG+R R + + +++ ++ GR+ + +++ + + + + +
Sbjct: 443 QQRPVSRGRGRGQRGPRSQPQNQRR---QQNRGRQSSQPPRQQ--QNRSNQNNQRQSQGP 497
Query: 867 EEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRR 926
+G G G R R + ++ GGG RR R+S + RS++++ + R
Sbjct: 498 NQGPRGQGGYNLRPRTY------QPQRYGGGQGRRWNPNPYRQSGQGRSQQQQPQPEARG 551
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRR 950
+ R R + R + R +R
Sbjct: 552 NQSRTPGPGRGQGGRGNQNRNQRS 575
Score = 35.7 bits (82), Expect = 0.14
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R +S R + ++R R R R +R R + + +RR++ R R+ +
Sbjct: 431 RGQSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQ 477
Score = 35.3 bits (81), Expect = 0.21
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R + R + + R R R R +R R + + +RR++ R R+ + R+++
Sbjct: 431 RGQSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQ 483
Score = 34.5 bits (79), Expect = 0.30
Identities = 15/64 (23%), Positives = 34/64 (53%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
R + + +S ++R R R R +R R + + +RR++ R R+ + R+++ RS +
Sbjct: 431 RGQSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNN 490
Query: 960 EEEE 963
+ +
Sbjct: 491 QRQS 494
Score = 33.7 bits (77), Expect = 0.55
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
++R R R R +R R + + +RR++ R R+ + R+++ R + +R+ +
Sbjct: 441 SDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQ 495
Score = 33.4 bits (76), Expect = 0.70
Identities = 13/60 (21%), Positives = 31/60 (51%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
+ +++ R R R R R + + +RR++ R R+ + R+++ R + +R+ G +
Sbjct: 440 QSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQ 499
Score = 32.6 bits (74), Expect = 1.1
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
G+ R + + R R R +R R + + +RR++ R R+ + R+++ R
Sbjct: 432 GQSIRFLPQSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNR 485
Score = 31.8 bits (72), Expect = 2.1
Identities = 11/60 (18%), Positives = 30/60 (50%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
+ ++R R R + R + + +RR++ R R+ + R+++ R + +R+ + +
Sbjct: 440 QSDQQRPVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQ 499
Score = 31.8 bits (72), Expect = 2.4
Identities = 14/61 (22%), Positives = 31/61 (50%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R R R ++ RS+ + RR++ R R+ + R+++ R + +R+ + + R +
Sbjct: 446 PVSRGRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQQNRSNQNNQRQSQGPNQGPRGQG 505
Query: 956 G 956
G
Sbjct: 506 G 506
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which are
members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 37.1 bits (86), Expect = 0.020
Identities = 17/64 (26%), Positives = 38/64 (59%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+ +KK + K K+ + +T + + + E+K KKKK E+ +E +KK++E+K+++
Sbjct: 107 QPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKK 166
Query: 1020 EKKR 1023
++
Sbjct: 167 KRHS 170
Score = 34.0 bits (78), Expect = 0.23
Identities = 20/70 (28%), Positives = 38/70 (54%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+ R + ++K K + KK + E E K E++ KKKK E++KE ++KK
Sbjct: 100 QYRLMHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKK 159
Query: 1012 EEEEKEEEEK 1021
+E++K+++
Sbjct: 160 KEKKKKKKRH 169
Score = 33.3 bits (76), Expect = 0.31
Identities = 15/64 (23%), Positives = 38/64 (59%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
+ K + ++ + ++ +E + +K+ KKK+ E++K++KKK++EK++++K+
Sbjct: 111 KKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHS 170
Query: 1014 EEKE 1017
E
Sbjct: 171 PEHP 174
Score = 32.9 bits (75), Expect = 0.51
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
++ + + ++ R + EE + K E++ KKKK K+ +KKK+E+++KKK+
Sbjct: 111 KKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHS 170
Query: 1002 EEEK 1005
E
Sbjct: 171 PEHP 174
Score = 32.1 bits (73), Expect = 0.98
Identities = 18/64 (28%), Positives = 35/64 (54%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
++ + + ++ R+ EE E K E+K KK+ +E+KK+++E+KKKKK+
Sbjct: 111 KKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKKKKEKKKKKKRHS 170
Query: 1004 EKEE 1007
+
Sbjct: 171 PEHP 174
>gnl|CDD|216403 pfam01271, Granin, Granin (chromogranin or secretogranin).
Length = 585
Score = 38.4 bits (89), Expect = 0.020
Identities = 34/204 (16%), Positives = 74/204 (36%), Gaps = 1/204 (0%)
Query: 822 RRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRR 881
++R++ +E++K + R+ E E+ E EE++ R + R
Sbjct: 189 QKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKRSKERTH 248
Query: 882 RSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
+ +E K+ G +K + + R + R R R R + R R
Sbjct: 249 KGRSLPDESKRSGQLGLEDEAEEEKEEKGQESRGLSAVQTYLLRWVNARGRGRSQNRAER 308
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE-KKKKK 1000
R + R+ +E E + + + ++G +K + EEE + +
Sbjct: 309 ERSEESEEKELDRASPYQEIEITANLQIPPSDLIRMLRKGDGRKPRGRVEEEGALEAPEA 368
Query: 1001 KEEEKEEEEKKEEEEKEEEEKKRR 1024
+E++E + + ++ R
Sbjct: 369 LDEKRELDLDHSRVFENSKDGAVR 392
Score = 35.4 bits (81), Expect = 0.17
Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 4/191 (2%)
Query: 835 RRGGGRRRRRGKKEEEKKKKKEEEEEGGEKE----EEEGGGGGGRRRRRRRRSGKEEEEK 890
+ G +++R + +E +K +++E++ + E+ GG +EE K
Sbjct: 182 KLDGQSKQKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVK 241
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
+ KE R + +R + + + + R + R R R R
Sbjct: 242 RSKERTHKGRSLPDESKRSGQLGLEDEAEEEKEEKGQESRGLSAVQTYLLRWVNARGRGR 301
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+ R+ +E EE ++KE + ++ + + K +K + EEE
Sbjct: 302 SQNRAERERSEESEEKELDRASPYQEIEITANLQIPPSDLIRMLRKGDGRKPRGRVEEEG 361
Query: 1011 KEEEEKEEEEK 1021
E + +EK
Sbjct: 362 ALEAPEALDEK 372
Score = 34.2 bits (78), Expect = 0.44
Identities = 23/154 (14%), Positives = 57/154 (37%), Gaps = 15/154 (9%)
Query: 886 EEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
E + + E GG R + + + + ++ + + + RR
Sbjct: 91 EALRQAENEPGGHPRENQPYNLQVEKNFPTDHSEDYETQQWEEEKLKHMKFPRRYEDNSE 150
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEE------EKKKKEGKTKKEEKKKEEEEEKKKK 999
+ +R + + + K EE + K+K ++ + EK +++E+ +
Sbjct: 151 EKHSKRTNEIVEVFYNPQSQATLKSVFEEVGKLDGQSKQKRERSDEREKSYQDDEDDTYR 210
Query: 1000 KKE---------EEKEEEEKKEEEEKEEEEKKRR 1024
+ E+ E+ EE++ +EE K+ +
Sbjct: 211 QNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKRSK 244
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino acids
in length. This family contains a P-loop motif suggesting
it is a nucleotide binding protein. It may be involved in
replication.
Length = 1198
Score = 38.5 bits (90), Expect = 0.021
Identities = 15/123 (12%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
KR + R + ++ R +R + ++ + + R+++ + R+ + ++ ++
Sbjct: 641 KRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQ 700
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK----KKEEEKEEEEKKEEEEKEEEEK 1021
++ + ++ +E +T++ K + E E + E + K ++ +++
Sbjct: 701 QQAFLEALKD-DFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQY 759
Query: 1022 KRR 1024
R
Sbjct: 760 DRE 762
Score = 32.0 bits (73), Expect = 2.2
Identities = 35/278 (12%), Positives = 95/278 (34%), Gaps = 20/278 (7%)
Query: 762 LDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGR-- 819
++ LQ+ K+ L + +L + T ++ +R R
Sbjct: 612 AEEALQSAVAKQKQAEEQLV---------QANAELEEQKRAEAEARTALKQARLDLQRLQ 662
Query: 820 --RRRRRKKKEEKKKWKRRGGGRRRRR---GKKEEEKKKKKEEEEEGGEKEEEEGGGGGG 874
++ + K E +++ + R+ K+ ++++ E + E
Sbjct: 663 NEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRELRTERLAK 722
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRR----RRRRRRRRRRRR 930
+ + + E + + R K+ ++ R + +R+
Sbjct: 723 WQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELASLDVDPNTVKELKRQIEE 782
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
R RR R R + + + +++ + E + + ++E +
Sbjct: 783 LETTIERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQELTRL 842
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
++ + ++KK E+E++ EK+ ++ E R +R+
Sbjct: 843 IKDTKLRRKKLEQERKALEKQLDQLDELLRGLRDEMRQ 880
Score = 30.4 bits (69), Expect = 7.2
Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 25/156 (16%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR----------------- 942
R K+ R +R + ++ + + R+++ + R
Sbjct: 646 EARTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFL 705
Query: 943 ----RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
R R R + E E + + E + + K + +E KK+ + E
Sbjct: 706 EALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYDRELAS 765
Query: 999 KKKEEEKEEEEKKEEEEKEEE----EKKRRRIRRKR 1030
+ +E K++ EE E +R +R R
Sbjct: 766 LDVDPNTVKELKRQIEELETTIERIAVRRPEVREYR 801
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular function
of Rrp7A remains unclear currently. Rrp7A harbors an
N-terminal RNA recognition motif (RRM), also termed RBD
(RNA binding domain) or RNP (ribonucleoprotein domain),
and a C-terminal RRP7 domain.
Length = 129
Score = 36.1 bits (84), Expect = 0.021
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 18/85 (21%)
Query: 957 KEEEEEEKKKEEKKKEEEE-------KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE-- 1007
KEEEEE+++KE++ + +E+ K ++ +KE + E++KKKKK++E +
Sbjct: 32 KEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKELKNFY 91
Query: 1008 -----EEKKEE----EEKEEEEKKR 1023
E K+ E +K EE+KKR
Sbjct: 92 RFQIRESKRNELAELRKKFEEDKKR 116
>gnl|CDD|218637 pfam05558, DREPP, DREPP plasma membrane polypeptide. This family
contains several plant plasma membrane proteins termed
DREPPs as they are developmentally regulated plasma
membrane polypeptides.
Length = 201
Score = 37.3 bits (86), Expect = 0.022
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKK---EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EEKK EE+ E +KK K K+ EE+KKEEE + E + +E K
Sbjct: 132 EEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAP 191
Query: 1019 E 1019
Sbjct: 192 A 192
Score = 33.1 bits (75), Expect = 0.51
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
EEKK EEE + K ++K+ EE+KK+++ + E + EE +
Sbjct: 132 EEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAK 189
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 37.9 bits (89), Expect = 0.022
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
R +R + S +EE+ ++++EE + + +T +++K EEE ++K+ EE +
Sbjct: 168 RYKRPIKLSLEEEKARQEEREE---YLQSQVNDLWRTIPPQREKLEEERARRKRFPEEPQ 224
Query: 1007 E 1007
E
Sbjct: 225 E 225
Score = 31.0 bits (71), Expect = 3.9
Identities = 9/58 (15%), Positives = 25/58 (43%)
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
R +R + + R + EE + + + + +++K + + K+ EE ++
Sbjct: 168 RYKRPIKLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKRFPEEPQE 225
Score = 30.2 bits (69), Expect = 6.2
Identities = 9/51 (17%), Positives = 20/51 (39%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
R +R + + R+ R + + + EK +EE ++K+
Sbjct: 168 RYKRPIKLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKR 218
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to the
RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C gene
from Saccharomyces cerevisiae. It is an essential yeast
protein involved in pre-rRNA processing and ribosome
assembly. Rrp7p contains an N-terminal RNA recognition
motif (RRM), also termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7 domain.
Length = 128
Score = 36.1 bits (84), Expect = 0.022
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 16/99 (16%)
Query: 928 RRRRRRRRRRRRRRR-----------RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R R+R R+R R R R+ +GK EEE+K+KE+KKK +K
Sbjct: 32 AREEERKRERKRLRNEPDEDGFVTVVRGGRKGPAAGEEAGKAAEEEKKEKEKKKK---KK 88
Query: 977 KKKEG--KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
K+ E + + EKKKEE+ + KK +E+++ E+ KE+
Sbjct: 89 KELEDFYRFQLREKKKEEQADLLKKFEEDKERVEKMKEK 127
>gnl|CDD|206666 cd01878, HflX, HflX GTPase family. HflX subfamily. A distinct
conserved domain with a glycine-rich segment N-terminal
of the GTPase domain characterizes the HflX subfamily.
The E. coli HflX has been implicated in the control of
the lambda cII repressor proteolysis, but the actual
biological functions of these GTPases remain unclear.
HflX is widespread, but not universally represented in
all three superkingdoms.
Length = 204
Score = 37.1 bits (87), Expect = 0.024
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
RR R R + R+ + +++R +R RR+RSG
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRSG 40
Score = 35.1 bits (82), Expect = 0.092
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
RR R R ++ R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 35.1 bits (82), Expect = 0.11
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
RR R R + R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 34.7 bits (81), Expect = 0.12
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
RR R R + R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 34.7 bits (81), Expect = 0.12
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
RR R R + R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 34.7 bits (81), Expect = 0.12
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
RR R R + R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 34.7 bits (81), Expect = 0.12
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
RR R R + R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 34.7 bits (81), Expect = 0.12
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
RR R R + R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 34.7 bits (81), Expect = 0.12
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
RR R R + R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 34.7 bits (81), Expect = 0.12
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RR R R + R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 34.7 bits (81), Expect = 0.12
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
RR R R + R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 31.7 bits (73), Expect = 1.5
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
RR R R + R+ + +++R +R RR
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRSG 40
Score = 31.3 bits (72), Expect = 1.8
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
RR ++R R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 30.1 bits (69), Expect = 4.8
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 899 RRR-RRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
RR R R + R + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
Score = 30.1 bits (69), Expect = 4.9
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRR 931
RR R++ + R+ + +++R +R RR+R
Sbjct: 8 RRLIRERIAKLRKELEKVKKQRELQRARRKRS 39
>gnl|CDD|236272 PRK08475, PRK08475, F0F1 ATP synthase subunit B; Validated.
Length = 167
Score = 36.5 bits (85), Expect = 0.025
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 950 RRRRRSGKEEEEEEKKKEEK-KKEEEEKKKKEGKTKKEE----KKKEEEEEKKKKKKEEE 1004
R + S + EE +EK KE K KKE+ KK +E K K E KKE +K +K+ +
Sbjct: 54 RINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTK 113
Query: 1005 KEEE--EKKEEEEKEEEEKKRRR 1025
+ E K EE E E +K R
Sbjct: 114 DDIENLIKSFEELMEFEVRKMER 136
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 37.9 bits (89), Expect = 0.025
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+ +E K+ + + +EEE+EEEE++EEE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 36.0 bits (84), Expect = 0.082
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
EE K+ + + EEE+EEEE++EEEE EEE
Sbjct: 285 DEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 35.6 bits (83), Expect = 0.13
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
+K +EE K+ + +EEEEE++++++EE EEE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 34.1 bits (79), Expect = 0.36
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
K+ ++ ++ + + ++EEE+EEEE++EE +EE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 34.1 bits (79), Expect = 0.39
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 847 KEEEKKKKKEEEEEGGEKEEEEGGGGGG 874
E+++++EEEEE E EEE G G
Sbjct: 299 AAAEEEEEEEEEEEEEEPSEEEAAAGLG 326
Score = 33.7 bits (78), Expect = 0.44
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
EE+++++EEEEE EEE G G
Sbjct: 299 AAAEEEEEEEEEEEEEEPSEEEAAAGLG 326
Score = 33.7 bits (78), Expect = 0.49
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
++ EE +E + + EEE++EEEE+EEEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
Score = 32.1 bits (74), Expect = 1.4
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
K+ +++ KE + + + EEEE++++++EEE+ EE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEE 319
Score = 32.1 bits (74), Expect = 1.4
Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 955 SGKEE-EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
+ K+ +EE K+ + + +++E + ++EE+++ EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 31.8 bits (73), Expect = 2.0
Identities = 11/41 (26%), Positives = 25/41 (60%)
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
+++ +E K + + E++++++EEE+EEE +EE
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 31.4 bits (72), Expect = 2.6
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
++ EE ++ +++EEEEE +++EEE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEE---EEEEEEPSEEE 320
Score = 31.4 bits (72), Expect = 2.7
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
K+ +E +E + + E+++EEEEE+++++ EE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEE 319
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 36.2 bits (84), Expect = 0.025
Identities = 10/59 (16%), Positives = 18/59 (30%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E K + + + G T + K+++ + E E EEE
Sbjct: 97 EPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 35.8 bits (83), Expect = 0.036
Identities = 10/57 (17%), Positives = 14/57 (24%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
K E K + E + + +KKK E E E
Sbjct: 94 KVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAA 150
Score = 32.0 bits (73), Expect = 0.84
Identities = 10/55 (18%), Positives = 14/55 (25%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
S E + + E K+ K E E + EEE
Sbjct: 101 SKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 31.6 bits (72), Expect = 1.2
Identities = 10/53 (18%), Positives = 14/53 (26%)
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
K E + K + E E KK++ E E E
Sbjct: 94 KVAEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAA 146
Score = 30.8 bits (70), Expect = 2.1
Identities = 10/57 (17%), Positives = 13/57 (22%), Gaps = 4/57 (7%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+ E + KKKK E E + EEE
Sbjct: 102 KLELFNAALAEADGGPTAEATTPKKKK----AAAEAAAAEAAAPAAEAAAAAAAEEE 154
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 37.7 bits (88), Expect = 0.025
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 834 KRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRR 879
K++ ++RR+ KE +++++++ E ++ EGGG GG R+R
Sbjct: 183 KKKQRKKQRRKRSKE----LREDDDDDEDEDDDGEGGGEGGEERQR 224
Score = 36.1 bits (84), Expect = 0.080
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 829 EKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRR 877
+ R+++R K+ +E ++ +++E+ + E G GG R+R
Sbjct: 176 GHSSDSEKKKQRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEERQR 224
Score = 33.4 bits (77), Expect = 0.53
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 857 EEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSR 911
EE EKE GGGGG G + +KKK+ R+++RRK+ + R
Sbjct: 149 EEPVQQEKEAAGSGGGGGGTWGLVGVPGHSSDSEKKKQ----RKKQRRKRSKELR 199
Score = 33.4 bits (77), Expect = 0.54
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
++++R+++RR+R + R +++E+E E E E++++E
Sbjct: 182 EKKKQRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEERQRE 225
Score = 33.4 bits (77), Expect = 0.67
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 838 GGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRR 882
++++ KK+ K+ K+ E++ +++E++ G GGG R+R
Sbjct: 180 DSEKKKQRKKQRRKRSKELREDDDDDEDEDDDGEGGGEGGEERQR 224
Score = 31.9 bits (73), Expect = 1.8
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 18/102 (17%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSG----------KEEEEEEKKKEEKK--------KEEEEK 976
R RRR RRR SG +E EE ++EK+
Sbjct: 112 RAERRRLEEEDVEGRRRHLLSGDTTNALDALSQEGLSEEPVQQEKEAAGSGGGGGGTWGL 171
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
G + EKKK+ +++++K+ KE +++++ ++E++ E
Sbjct: 172 VGVPGHSSDSEKKKQRKKQRRKRSKELREDDDDDEDEDDDGE 213
Score = 30.0 bits (68), Expect = 7.7
Identities = 7/30 (23%), Positives = 20/30 (66%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
++++R+++RR+R + R E+E+++
Sbjct: 182 EKKKQRKKQRRKRSKELREDDDDDEDEDDD 211
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 37.3 bits (87), Expect = 0.026
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK--------------EEEEEKKKKKKEE 1003
+EEE+E + E++KK +E + + KKK + EEK+ + +EE
Sbjct: 17 DEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAELREE 76
Query: 1004 EKEEEEKKEEEEKEEE 1019
+EE KK+E KEEE
Sbjct: 77 LREEFLKKQEAVKEEE 92
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 37.4 bits (87), Expect = 0.026
Identities = 12/55 (21%), Positives = 13/55 (23%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
GGGR R R R R R R R R +
Sbjct: 2 MGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56
Score = 35.1 bits (81), Expect = 0.17
Identities = 12/52 (23%), Positives = 13/52 (25%)
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
G GG R R R R R R R R R +
Sbjct: 5 GFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56
Score = 34.7 bits (80), Expect = 0.20
Identities = 12/56 (21%), Positives = 13/56 (23%), Gaps = 1/56 (1%)
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
GGG R R R R R R R R R +
Sbjct: 2 MGGGFGGGRG-GGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56
Score = 34.3 bits (79), Expect = 0.28
Identities = 14/56 (25%), Positives = 17/56 (30%)
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRR 924
G GGG R R G + GGGR R + R R +
Sbjct: 1 GMGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGGGGGGPGK 56
Score = 33.9 bits (78), Expect = 0.35
Identities = 18/62 (29%), Positives = 19/62 (30%), Gaps = 9/62 (14%)
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
GG GGGR R G GGGGR R R R R R
Sbjct: 4 GGFGGGRGGGRGGGGGG-------GRGGGGRGGGR--GGGRGRGRGGGGGGRGGGGGGGP 54
Query: 929 RR 930
+
Sbjct: 55 GK 56
Score = 31.6 bits (72), Expect = 1.9
Identities = 19/70 (27%), Positives = 20/70 (28%), Gaps = 15/70 (21%)
Query: 832 KWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKK 891
GGGR RG GG GG G GR R G
Sbjct: 2 MGGGFGGGRGGGRGGG------GGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGG------ 49
Query: 892 KKEGGGGRRR 901
GGGG +
Sbjct: 50 ---GGGGPGK 56
Score = 29.7 bits (67), Expect = 8.7
Identities = 18/71 (25%), Positives = 18/71 (25%), Gaps = 15/71 (21%)
Query: 835 RRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKE 894
GGG RG GG GG GGG R R
Sbjct: 1 GMGGGFGGGRG---------------GGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGG 45
Query: 895 GGGGRRRRRRK 905
GGG K
Sbjct: 46 RGGGGGGGPGK 56
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 37.3 bits (87), Expect = 0.028
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
++R E E + ++++K +EE KKKK ++K + K+ + KK
Sbjct: 233 KKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 36.5 bits (85), Expect = 0.059
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKK------EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
K E K +K +E +KKK+ E + EKK++ +EE KKKK +E K +
Sbjct: 213 KSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKAL 272
Query: 1011 K 1011
K
Sbjct: 273 K 273
Score = 35.8 bits (83), Expect = 0.10
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
++R + ++ E E + E+K+K +EE KKK+ K K K ++ K KK
Sbjct: 233 KKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 31.1 bits (71), Expect = 2.4
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+ K+ K E K + K+ +KKK E EE E E +K+ + KEE +
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEED-----VEAAESRAEKKRKSKEEIK 259
Query: 1021 KKRRRIRRKR 1030
KK+ + +
Sbjct: 260 KKKPKESKGV 269
Score = 31.1 bits (71), Expect = 3.0
Identities = 14/66 (21%), Positives = 33/66 (50%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ +E K + + K + KK+ + +E+ E + + +++ K +EE K+++ K
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 1017 EEEEKK 1022
E + K
Sbjct: 265 ESKGVK 270
Score = 30.4 bits (69), Expect = 5.3
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+E ++KK+E ++ E + + E K K +EE KKKK KE + + KK
Sbjct: 226 YLKESKKKKRETEEDVEAAESRAEKKRKS------KEEIKKKKPKESKGVKALKK 274
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 35.1 bits (81), Expect = 0.029
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGGGG 874
+ E + +EEE+E +EE + G
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESDDDMLFG 106
Score = 34.3 bits (79), Expect = 0.068
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 999 KKKEEEKEEEEKKEEEEKEEEE 1020
E ++ EEE+KEEE +EE +
Sbjct: 79 AAAEADEAEEEEKEEEAEEESD 100
Score = 33.5 bits (77), Expect = 0.10
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E + + EEE++EEE +EE +
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESD 100
Score = 33.5 bits (77), Expect = 0.11
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 998 KKKKEEEKEEEEKKEEEEKEEEE 1020
+ +E EEEEK+EE E+E ++
Sbjct: 79 AAAEADEAEEEEKEEEAEEESDD 101
Score = 33.5 bits (77), Expect = 0.12
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
E E +E ++++K+EE +EE +
Sbjct: 73 AAAGAEAAAEADEAEEEEKEEEAEEESD 100
Score = 32.8 bits (75), Expect = 0.24
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEEK 1021
E E ++ EEEEKEEE +
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAE 96
Score = 31.6 bits (72), Expect = 0.53
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+ + +E +EEE+++E EE+ +++
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 31.6 bits (72), Expect = 0.59
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 988 KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E + E E+EE+E++ EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 30.1 bits (68), Expect = 1.7
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEE 995
+ E +EE+K+EE EE
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEE 97
Score = 30.1 bits (68), Expect = 2.0
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
G E + EEEEK+++ +EE ++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 29.7 bits (67), Expect = 2.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 955 SGKEEEEEEKKKEEKKKEEEE 975
+ E +E ++EEK++E EE
Sbjct: 77 AEAAAEADEAEEEEKEEEAEE 97
Score = 29.7 bits (67), Expect = 2.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEE 995
E + + ++EEK++E EEE
Sbjct: 73 AAAGAEAAAEADEAEEEEKEEEAEEE 98
Score = 28.9 bits (65), Expect = 4.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E E + EEE++EEE +
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAE 96
Score = 28.9 bits (65), Expect = 4.5
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 10/41 (24%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
+ E + ++ +EEE KEE+ +EE ++
Sbjct: 71 AAAAAGAEAAAEADEAEEEE----------KEEEAEEESDD 101
Score = 28.9 bits (65), Expect = 4.7
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 8/37 (21%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
E E + EEEEK+ EE ++E +++
Sbjct: 74 AAGAEAAAEADEAEEEEKE--------EEAEEESDDD 102
>gnl|CDD|225995 COG3464, COG3464, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 402
Score = 37.8 bits (88), Expect = 0.030
Identities = 17/97 (17%), Positives = 28/97 (28%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
R + R + RRR R + R +R + +RR R R + + E
Sbjct: 232 DRFHVVQYISRALEQVRRRVRNQFRSEDKRIKALWKRRARLSSRYLCDKNFQNLSLLRYE 291
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
+ + +E E KK
Sbjct: 292 RLSPILGELYSLYPALRVAYDLAQELAADRRREAVKK 328
Score = 35.9 bits (83), Expect = 0.10
Identities = 14/107 (13%), Positives = 34/107 (31%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
+ R + R + RRR R + R +R + +RR R R ++ +
Sbjct: 225 PNALIIADRFHVVQYISRALEQVRRRVRNQFRSEDKRIKALWKRRARLSSRYLCDKNFQN 284
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
++ + + +E ++ E ++ +
Sbjct: 285 LSLLRYERLSPILGELYSLYPALRVAYDLAQELAADRRREAVKKLIQ 331
Score = 33.6 bits (77), Expect = 0.62
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
R + SR RRR R + R +R + +RR R R + + S
Sbjct: 232 DRFHVVQYISRALEQVRRRVRNQFRSEDKRIKALWKRRARLSSRYLCDKNFQNLS----- 286
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKK 989
++ E + + +
Sbjct: 287 LLRYERLSPILGELYSLYPALRVAYDLAQ 315
Score = 31.3 bits (71), Expect = 3.2
Identities = 12/82 (14%), Positives = 21/82 (25%), Gaps = 7/82 (8%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R ++ RR R + R +R + +RR R R + + R
Sbjct: 238 QYISRALEQVRRRVRNQFRSEDKRIKALWKRRARLSSRYLCDKNFQNLSLLR-------Y 290
Query: 958 EEEEEEKKKEEKKKEEEEKKKK 979
E +
Sbjct: 291 ERLSPILGELYSLYPALRVAYD 312
Score = 30.1 bits (68), Expect = 7.3
Identities = 16/97 (16%), Positives = 30/97 (30%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
R + R + RRR R+ E++ K K++ + K + E
Sbjct: 232 DRFHVVQYISRALEQVRRRVRNQFRSEDKRIKALWKRRARLSSRYLCDKNFQNLSLLRYE 291
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ + + +E RRR K+
Sbjct: 292 RLSPILGELYSLYPALRVAYDLAQELAADRRREAVKK 328
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 37.1 bits (86), Expect = 0.031
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
EE +KE + +G K +K +EE++ + EEKE +E +EEEE EEEE
Sbjct: 219 EEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEE 278
Query: 1021 KK 1022
++
Sbjct: 279 EE 280
Score = 36.7 bits (85), Expect = 0.052
Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EE EK+ + +++ K K ++ EE++++ EE++ +E+++EEE +EE
Sbjct: 219 EEYYEKESSDAAASQDDGPK-GSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEE 277
Query: 1019 EEK 1021
EE+
Sbjct: 278 EEE 280
Score = 36.0 bits (83), Expect = 0.090
Identities = 19/63 (30%), Positives = 41/63 (65%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE E++ + +++ K + K KK + +++++++ +++E KE+EE++E EE+E
Sbjct: 219 EEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEE 278
Query: 1018 EEE 1020
EEE
Sbjct: 279 EEE 281
Score = 35.6 bits (82), Expect = 0.11
Identities = 17/65 (26%), Positives = 37/65 (56%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E+E + + + K + +E+ ++ + ++K+ KE+E+EEE ++EEEE
Sbjct: 221 YYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
Query: 1016 KEEEE 1020
++E+E
Sbjct: 281 EDEDE 285
Score = 30.6 bits (69), Expect = 3.6
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 13/66 (19%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
S + + K +K +EE+ ++ + EEK+ K E++EEEE +EEE
Sbjct: 232 SQDDGPKGSDVKNKKSDDEEDD----------DQDGDYVEEKELK---EDEEEEETEEEE 278
Query: 1015 EKEEEE 1020
E+E+E+
Sbjct: 279 EEEDED 284
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 37.9 bits (88), Expect = 0.032
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E+E +K +E K EE ++K + + E ++ ++ KK K+ +K E E E
Sbjct: 1162 EKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTE 1221
Query: 1019 E 1019
E
Sbjct: 1222 E 1222
Score = 37.1 bits (86), Expect = 0.066
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E+E ++ KE+ K EE +K + + E ++ + KK +K ++ E E E
Sbjct: 1162 EKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTE 1221
Query: 1018 E 1018
E
Sbjct: 1222 E 1222
Score = 33.3 bits (76), Expect = 0.84
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K EE EK + + + K + K+ +K KK E + EE
Sbjct: 1174 KAEEAREKLQRAAAR----GESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAM 1229
Query: 1017 EEE 1019
E E
Sbjct: 1230 ETE 1232
Score = 31.4 bits (71), Expect = 3.2
Identities = 36/220 (16%), Positives = 67/220 (30%), Gaps = 20/220 (9%)
Query: 823 RRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRR 882
R K + + + + R+ K+ KK ++ E EE G
Sbjct: 1179 REKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSA-------MET 1231
Query: 883 SGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRR-------RRRRRRRRRR 935
E K K G ++ K + + R + +
Sbjct: 1232 ENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKA 1291
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK--KKEGKTKKEEKKKEEE 993
RR R++ S ++++++ E E +KK +K K+ K
Sbjct: 1292 VPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGGRKPAAANKKAAKPPAA 1351
Query: 994 EEK----KKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+K + ++ E K E EKK R++R
Sbjct: 1352 AKKRGPATVQSGQKLLTEMLKPAEAIGISPEKKVRKMRAS 1391
>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 37.6 bits (88), Expect = 0.033
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
RRR RRR + +R + R RR++R RSG
Sbjct: 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSG 191
Score = 37.2 bits (87), Expect = 0.043
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
+ GG G R + RRR RR + +R + R RR++R R
Sbjct: 139 SRLGGGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSR 189
Score = 34.9 bits (81), Expect = 0.19
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
RRR RRR + +R + R RR++R R
Sbjct: 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSR 189
Score = 34.9 bits (81), Expect = 0.19
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
RRR RRR + +R + R RR++R R
Sbjct: 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSR 189
Score = 34.9 bits (81), Expect = 0.19
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
RRR RRR + +R + R RR++R R
Sbjct: 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSR 189
Score = 34.9 bits (81), Expect = 0.19
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
RRR RRR + +R + R RR++R R
Sbjct: 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSR 189
Score = 34.9 bits (81), Expect = 0.19
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RRR RRR + +R + R RR++R R
Sbjct: 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSR 189
Score = 34.9 bits (81), Expect = 0.22
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
RRR RRR + +R + R RR++RS
Sbjct: 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSG 191
Score = 34.9 bits (81), Expect = 0.24
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
RRR RRR + +R + R RR++R R
Sbjct: 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSR 189
Score = 33.0 bits (76), Expect = 0.82
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
RRR RRR + +R + R RR +
Sbjct: 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSG 191
Score = 31.5 bits (72), Expect = 2.8
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
RRR RRR + +R + R RR+
Sbjct: 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSG 191
>gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function
unknown].
Length = 833
Score = 37.7 bits (87), Expect = 0.033
Identities = 25/217 (11%), Positives = 73/217 (33%), Gaps = 2/217 (0%)
Query: 809 QIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEE 868
Q L+ + + + + + +++E + +EE K
Sbjct: 372 QGALNARLKLAQDDLTQAELNYAAADQAANQEGALNAREDEAEVLSTQEERRDILKNLLA 431
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
R+ ++ + + + + + ++ +SR + + R + +
Sbjct: 432 DAEKRTARQEELNKALAKAKILQADKAAKAYQEDILQREAQSRGKTAAAERSQEQMTAAL 491
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEE--EEKKKKEGKTKKE 986
+ +++ + + ++ K EE+ KEE K+ + E+K E K +
Sbjct: 492 KALLAFQQQIADLSGAKEKASDQKSLLWKAEEQYALLKEEAKQRQLQEQKALLEHKKETL 551
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
E + E ++ E + ++E+ + +
Sbjct: 552 EYTSQLAELLDQQADRFELSAQAAGSQKERGSDLYRE 588
Score = 36.5 bits (84), Expect = 0.080
Identities = 24/160 (15%), Positives = 59/160 (36%), Gaps = 8/160 (5%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
+ E+E + RR + + +R +R+ + + + + +
Sbjct: 399 AANQEGALNAREDEAEVLSTQEERRDILKNLLADAEKRTARQEELNKALAKAKILQADKA 458
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
+ + +R + R + + E +E+ K +++ + KE K +++
Sbjct: 459 AKAYQEDILQREAQSRGKTAAAERSQEQMTAALKALLAFQQQIADLSGAKE---KASDQK 515
Query: 996 KKKKKKEEEK---EEEEKKEE--EEKEEEEKKRRRIRRKR 1030
K EE+ +EE K+ + E+K E K+ +
Sbjct: 516 SLLWKAEEQYALLKEEAKQRQLQEQKALLEHKKETLEYTS 555
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein. This
family represents Cwf15/Cwc15 (from Schizosaccharomyces
pombe and Saccharomyces cerevisiae respectively) and
their homologues. The function of these proteins is
unknown, but they form part of the spliceosome and are
thus thought to be involved in mRNA splicing.
Length = 241
Score = 37.0 bits (86), Expect = 0.035
Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 6/141 (4%)
Query: 878 RRRRRSGKEEEEKKK--KEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
R+ G E+E +K+ + R + K+ +
Sbjct: 43 YRQPGQGTEDELRKRDLRAELEEAERAHKSKKENKLAIEDADKSTNLDASNEGDEDDDEE 102
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE-EKKKEEEE 994
+R+R R S + + + + E++ +E EK K+E
Sbjct: 103 DEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDE---TAALLRELEKIKKERA 159
Query: 995 EKKKKKKEEEKEEEEKKEEEE 1015
E+K++++EE+ EEEK EEE
Sbjct: 160 EEKEREEEEKAAEEEKAREEE 180
Score = 36.2 bits (84), Expect = 0.051
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 17/138 (12%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
K R+ + R+R R R + ++ + + S + +E++++
Sbjct: 42 KYRQPGQGTEDELRKRDLRAELEEAERAHKSKKENKLAIEDADKSTNLDASNEGDEDDDE 101
Query: 965 KKEEKKKEEEE-----------KKKKEGKTKKEEKKKEEEEEKK------KKKKEEEKEE 1007
+ E K+K EE + + + E+E +K K+E EE
Sbjct: 102 EDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEE 161
Query: 1008 EEKKEEEEKEEEEKKRRR 1025
+E++EEE+ EEEK R
Sbjct: 162 KEREEEEKAAEEEKAREE 179
Score = 33.9 bits (78), Expect = 0.27
Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 3/140 (2%)
Query: 890 KKKKEGGGGR---RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
K ++ G G R+R + R + ++ + +
Sbjct: 42 KYRQPGQGTEDELRKRDLRAELEEAERAHKSKKENKLAIEDADKSTNLDASNEGDEDDDE 101
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
+R+R ++ + + + + E++ E +K KKE +E
Sbjct: 102 EDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEE 161
Query: 1007 EEEKKEEEEKEEEEKKRRRI 1026
+E ++EE+ EEE+ + I
Sbjct: 162 KEREEEEKAAEEEKAREEEI 181
>gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional.
Length = 423
Score = 37.6 bits (88), Expect = 0.035
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R R R RR R RRRR+RSG
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKRSG 423
Score = 36.9 bits (86), Expect = 0.061
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKRSG 423
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRR 941
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRR 942
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRR 943
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRR 944
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRR 945
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRR 946
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRR 947
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRR 948
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRR 949
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRR 950
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRR 951
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRR 952
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 34.9 bits (81), Expect = 0.22
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
K R +R R RR R RRRR+R
Sbjct: 394 KPLRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 34.6 bits (80), Expect = 0.27
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRR 926
R + R + RRS R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 34.6 bits (80), Expect = 0.29
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRR 937
R +R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 34.6 bits (80), Expect = 0.30
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRR 935
R R R RR R RRRR+R
Sbjct: 397 RLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 34.2 bits (79), Expect = 0.35
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRR 933
R R R+ RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 33.4 bits (77), Expect = 0.61
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRR 938
R R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 32.6 bits (75), Expect = 1.0
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRR 936
R R RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 32.6 bits (75), Expect = 1.0
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRR 925
R R + RR R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 32.6 bits (75), Expect = 1.1
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRR 928
R R R+ R R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 32.3 bits (74), Expect = 1.4
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRR 924
R R + RR + R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
Score = 30.7 bits (70), Expect = 4.0
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRR 927
R + R R R RRRR+R
Sbjct: 396 LRLTRPRTGNGPRRSGAPRNRRRRKR 421
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 37.3 bits (87), Expect = 0.035
Identities = 20/59 (33%), Positives = 39/59 (66%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
SG+ +E K++ K+ EE ++K + KK E+KK ++ +KKKK+K++ K+ ++K +
Sbjct: 356 SGRYIGDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 36.5 bits (85), Expect = 0.063
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKK 854
+KK+EEKK KR+ +R+++GKK ++K +K
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 35.7 bits (83), Expect = 0.12
Identities = 6/32 (18%), Positives = 25/32 (78%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
K++R ++ +R+++++R+++ ++R+++ R+
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 35.7 bits (83), Expect = 0.13
Identities = 11/57 (19%), Positives = 36/57 (63%), Gaps = 7/57 (12%)
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
KEE K+ +E + K + +++R ++ ++R+++++R+++ ++R+++ R+
Sbjct: 365 KEELNKRIEE-------IKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 35.3 bits (82), Expect = 0.15
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
++ KEE K+ +E K K + K++ EEKK +K+ +++KK +++ ++ +KK R+
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKR-----KKKKKRKKKGKKRKKKGRK 414
Score = 35.3 bits (82), Expect = 0.17
Identities = 18/53 (33%), Positives = 36/53 (67%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+E K+E K+ EE K+K KK+ ++K+ ++ KKKKK++++ ++ +KK +
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 35.3 bits (82), Expect = 0.18
Identities = 7/46 (15%), Positives = 31/46 (67%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
KR + + + +++R ++ ++R+++++R+++ ++R+++ R+
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 34.9 bits (81), Expect = 0.18
Identities = 5/31 (16%), Positives = 26/31 (83%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
+++R ++ ++R+++++R+++ ++R+++ R+
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 34.9 bits (81), Expect = 0.18
Identities = 5/31 (16%), Positives = 26/31 (83%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
+++R ++ ++R+++++R+++ ++R+++ R+
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 34.9 bits (81), Expect = 0.18
Identities = 5/31 (16%), Positives = 26/31 (83%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
+++R ++ ++R+++++R+++ ++R+++ R+
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 34.9 bits (81), Expect = 0.18
Identities = 5/31 (16%), Positives = 26/31 (83%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
+++R ++ ++R+++++R+++ ++R+++ R+
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 34.9 bits (81), Expect = 0.23
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 825 KKKEEKKKWKRRGGGRRRRRGKKEEEKKKKK 855
KKK E+KK ++R ++R++ K+ +KK +K
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 34.2 bits (79), Expect = 0.39
Identities = 9/29 (31%), Positives = 22/29 (75%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKK 847
+R ++ +K +KKK +++ G +R+++G+K
Sbjct: 386 KREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 33.8 bits (78), Expect = 0.45
Identities = 5/31 (16%), Positives = 25/31 (80%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
+++R ++ ++R+++++R+++ ++R+++ R
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 32.2 bits (74), Expect = 1.3
Identities = 5/31 (16%), Positives = 25/31 (80%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
+++R ++ ++R+++++R+++ ++R+++ K
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 31.9 bits (73), Expect = 1.9
Identities = 5/31 (16%), Positives = 26/31 (83%)
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
+++R ++ ++R+++++R+++ ++R++ G++
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 31.5 bits (72), Expect = 2.2
Identities = 20/50 (40%), Positives = 35/50 (70%), Gaps = 5/50 (10%)
Query: 985 KEEKKKEEEEEKKK-----KKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
KEE K EE K+K KKK EEK+ +++K++++++++ KKR++ RK
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 31.1 bits (71), Expect = 3.3
Identities = 6/30 (20%), Positives = 21/30 (70%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRR 904
++R ++ +++++K+KK+G +++ R+
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 31.1 bits (71), Expect = 3.6
Identities = 9/30 (30%), Positives = 21/30 (70%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKE 848
++R +K ++ KKK KR+ G++R++ ++
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 30.7 bits (70), Expect = 4.3
Identities = 6/31 (19%), Positives = 25/31 (80%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
+++R ++ ++R+++++R++ GK+ +++ +K
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 30.7 bits (70), Expect = 4.4
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 851 KKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRR 882
KKK+EE++ K++++ G +R+++ R+
Sbjct: 383 PKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 30.3 bits (69), Expect = 5.4
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRK 905
+++R ++ K +++KK+K+ G R+++ RK
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 30.3 bits (69), Expect = 6.2
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 816 RRGRRRRRRKKKEEKKKWKRRGGGRRRRRGK 846
++ R ++ +K+++KKK K++G R+++ K
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 29.9 bits (68), Expect = 6.8
Identities = 7/31 (22%), Positives = 20/31 (64%)
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKR 907
+++R ++ +KKKK G++R+++ ++
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 29.9 bits (68), Expect = 8.4
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEE 849
+++R KK +++KK K+R ++R+ K +
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 29.6 bits (67), Expect = 8.6
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 814 RNRRGRRRRRRKKKEEKKKWKRRGGGRRRR 843
+ R ++ ++RKKK+++KK ++ + R+
Sbjct: 385 KKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 29.6 bits (67), Expect = 9.5
Identities = 5/31 (16%), Positives = 23/31 (74%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
+++R ++ ++R+++++R+++ ++R K +
Sbjct: 384 KKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 37.4 bits (86), Expect = 0.036
Identities = 31/149 (20%), Positives = 65/149 (43%), Gaps = 3/149 (2%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
R RR R++S K E E+ +K+ + + S + + R+ R +
Sbjct: 189 RARRFRKKSSKIEIEEVEKKVD---DLLEKDMKAESVSVVLKDEKELARQERVSSWENFK 245
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
R ++ ++ EE E+ + E E K+ EG ++++++ E E
Sbjct: 246 EEPGEPLSRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAE 305
Query: 995 EKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
K++ + + +E +++EE+ E EE +R
Sbjct: 306 AHKEEVQSDRPDEIGEEKEEDDENEENER 334
Score = 35.1 bits (80), Expect = 0.19
Identities = 19/75 (25%), Positives = 40/75 (53%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
G E E ++ E K++++E+ + K+E + +E ++K++++E EE E+ E
Sbjct: 280 GAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELL 339
Query: 1016 KEEEEKKRRRIRRKR 1030
+E + + I KR
Sbjct: 340 ADELNELEKGIEEKR 354
Score = 33.9 bits (77), Expect = 0.42
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
R ++ ++ +EE EE +E+ E + KE +E+++EE E + K+E +
Sbjct: 253 SRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQ 312
Query: 1005 KEEEEKKEEEEKEEEEKKRRRIRRK 1029
+ + E E++EE+ + R
Sbjct: 313 SDRPD--EIGEEKEEDDENEENERH 335
Score = 32.8 bits (74), Expect = 1.1
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
++++EE + E K+E + + E +KEE + EE E+ + +E E EK EE++
Sbjct: 295 EQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKR 354
Query: 1017 EEEEKKRRRIRRKR 1030
+ E I +KR
Sbjct: 355 RQMESATNPILQKR 368
Score = 30.4 bits (68), Expect = 5.8
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E +E + +E+++EE E + + + ++ E EEK++ + EE E + +E
Sbjct: 285 ENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELN 344
Query: 1018 EEEKKRRRIRRK 1029
E EK RR+
Sbjct: 345 ELEKGIEEKRRQ 356
>gnl|CDD|237626 PRK14154, PRK14154, heat shock protein GrpE; Provisional.
Length = 208
Score = 36.7 bits (84), Expect = 0.037
Identities = 26/92 (28%), Positives = 39/92 (42%)
Query: 838 GGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGG 897
GG + E E K K + E+ +EE+E GGG G + R G E ++K EG
Sbjct: 2 GGCMSSKNNPESETKAKNKWEKVMEAEEEQEEGGGDGSQEMEPHREGLEFPSREKLEGQL 61
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
R R+ + + R R+R R +
Sbjct: 62 TRMERKVDEYKTQYLRAQAEMDNLRKRIEREK 93
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 35.7 bits (83), Expect = 0.038
Identities = 19/84 (22%), Positives = 52/84 (61%), Gaps = 10/84 (11%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE----EEEKKKKKKEEEKEEEE-- 1009
GK +++ +K+ +K + E +KK+KE + ++++ +K+ EE +K K++E +++++E
Sbjct: 33 GKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQ 92
Query: 1010 ----KKEEEEKEEEEKKRRRIRRK 1029
++E ++++++ + I K
Sbjct: 93 QKQQAAQQELQQKQQELLQPIYDK 116
Score = 31.1 bits (71), Expect = 1.6
Identities = 18/70 (25%), Positives = 44/70 (62%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E K +K+ E+E KK + + +K+EK+ ++EE+K +K+ EE K +++E +++
Sbjct: 28 SESPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQK 87
Query: 1020 EKKRRRIRRK 1029
+++ ++ ++
Sbjct: 88 QQELQQKQQA 97
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 37.7 bits (87), Expect = 0.038
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+E E K+K E K++ +T K KK +EE+E K+ E + E K+ E E
Sbjct: 456 PGHPQEHGHERKRKRGGELKEELIETLKLVKKLKEEQESLAKELEATAHKSEIKKIAESE 515
Score = 32.7 bits (74), Expect = 1.1
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGK--TKKEEKKKEEEEEKK 997
R+R+R KEE E K +K KEE+E KE + K E KK E E K
Sbjct: 466 RKRKRGGELKEELIETLKLVKKLKEEQESLAKELEATAHKSEIKKIAESEFK 517
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain fusion
protein; Provisional.
Length = 131
Score = 35.3 bits (81), Expect = 0.041
Identities = 14/69 (20%), Positives = 29/69 (42%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
R G + ++ E + + + + + E +EE++ + +E +E
Sbjct: 57 RAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADA 116
Query: 1012 EEEEKEEEE 1020
E EE +EEE
Sbjct: 117 EAEEADEEE 125
Score = 34.2 bits (78), Expect = 0.11
Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
R + + E EE + + ++ +E + + + +EEEE + E
Sbjct: 57 RAEKGPAAAATAAAEAAEEAEAADADEDADEAAEAD-----AADEADEEEETDEAVDETA 111
Query: 1005 KEEEEKKEEEEKEEEE 1020
E + + EE ++EE+E
Sbjct: 112 DEADAEAEEADEEEDE 127
Score = 33.0 bits (75), Expect = 0.23
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
R + + E ++ E +E+ + E E ++EE +E + +E
Sbjct: 57 RAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADA 116
Query: 1007 EEEKKEEEEKEEEE 1020
E E+ +EEE EE E
Sbjct: 117 EAEEADEEEDEEAE 130
Score = 32.6 bits (74), Expect = 0.38
Identities = 15/75 (20%), Positives = 33/75 (44%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
R + + E EE + + + +E + EE++ +E ++ + +
Sbjct: 57 RAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADA 116
Query: 1004 EKEEEEKKEEEEKEE 1018
E EE +++E+EE E
Sbjct: 117 EAEEADEEEDEEAEA 131
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 37.3 bits (87), Expect = 0.043
Identities = 14/66 (21%), Positives = 32/66 (48%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+E EEE + + K E + K + K + ++ K +E K++E+ ++++K
Sbjct: 857 IQEAEEEIQNINENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKK 916
Query: 1017 EEEEKK 1022
+ E+
Sbjct: 917 DLEKTD 922
Score = 36.6 bits (85), Expect = 0.089
Identities = 14/64 (21%), Positives = 34/64 (53%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E ++ + E+++ + + ++E + E+ + EE+K K+E + E E +E EE+ +
Sbjct: 806 ELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQ 865
Query: 1019 EEKK 1022
+
Sbjct: 866 NINE 869
Score = 35.0 bits (81), Expect = 0.22
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 14/105 (13%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE-- 992
R + R +R R EE++ K+E K E E ++ E + + + K E
Sbjct: 816 EERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFV 875
Query: 993 ---EEEKKKKKKEEEKE---------EEEKKEEEEKEEEEKKRRR 1025
+ KK K K+ +E K++E+ ++++K +
Sbjct: 876 EFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEK 920
Score = 34.6 bits (80), Expect = 0.34
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
++ + EEE+ K ++E + EE E ++++ K+E + + E +E EE+ +
Sbjct: 808 IDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQ 865
Score = 31.6 bits (72), Expect = 2.7
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 9/65 (13%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE---------EKKKEEEEEKKKKKKEEEK 1005
+ + E K E + + + KK + K+ ++ K++E+ KKKKK+ EK
Sbjct: 861 EEEIQNINENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEK 920
Query: 1006 EEEEK 1010
+EE
Sbjct: 921 TDEEA 925
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone sialoprotein
(BSP) is a major structural protein of the bone matrix
that is specifically expressed by fully-differentiated
osteoblasts. The expression of bone sialoprotein (BSP) is
normally restricted to mineralised connective tissues of
bones and teeth where it has been associated with mineral
crystal formation. However, it has been found that
ectopic expression of BSP occurs in various lesions,
including oral and extraoral carcinomas, in which it has
been associated with the formation of microcrystalline
deposits and the metastasis of cancer cells to bone.
Length = 291
Score = 37.0 bits (85), Expect = 0.045
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 27/93 (29%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKE---------------------------GKTKKEE 987
S +EE EEE EE+ E+ + + E G +
Sbjct: 59 SSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLSTVTLGYGGDATPGTGNIGLAALQL 118
Query: 988 KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
KK KK K++E E+EE++EEEE+EE E
Sbjct: 119 PKKAGNAGKKATKEDESDEDEEEEEEEEEEEAE 151
Score = 33.5 bits (76), Expect = 0.45
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
KK G K+ K++E +E +EE+EEEE++EE E EE E+
Sbjct: 120 KKAGNAGKKATKEDESDE------DEEEEEEEEEEEAEVEENEQ 157
Score = 32.4 bits (73), Expect = 1.0
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+ E+EEEE+++EE EE E ++ E T E + + EE E++
Sbjct: 131 KEDESDEDEEEEEEEEE---EEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEEE 187
Query: 1012 EEEEKEEE 1019
E E E
Sbjct: 188 SVTEAEAE 195
Score = 30.0 bits (67), Expect = 6.0
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+ S ++EEEEE+++EE+ + EE ++ G + + EE +EE
Sbjct: 131 KEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEEESVT 190
Query: 1011 KEEEE 1015
+ E E
Sbjct: 191 EAEAE 195
Score = 29.7 bits (66), Expect = 8.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 833 WKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE 867
+ G ++ KE+E + +EEEEE E+E E
Sbjct: 117 QLPKKAGNAGKKATKEDESDEDEEEEEEEEEEEAE 151
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 37.4 bits (87), Expect = 0.045
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE---KKKKKKE 1002
++R+ K EE EK + ++K E K KT E+ +++ + KK KK++
Sbjct: 43 KKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQ 102
Query: 1003 EEKEEEEKKEEEEKEEEEKK 1022
++KE E KK E+E+++
Sbjct: 103 KKKEAERKKALLLDEKEKER 122
Score = 35.1 bits (81), Expect = 0.23
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
++R+ +R+R R + + R +R R + K E++ ++ K +
Sbjct: 43 KKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLK------ 96
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
K+KK +KKKE E +K E+EKE + E+
Sbjct: 97 -KSKKRQKKKEAERKKALLLDEKEKERAAEYTSED 130
Score = 32.4 bits (74), Expect = 1.3
Identities = 19/89 (21%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
++ +++++++++RR +E+E E + E G K E++ E+ KK+
Sbjct: 276 KKPKKKKKKKKKRRKDLDEDELEPE------AEGLGSSDSGSRKDVEEENARLEDSPKKR 329
Query: 1001 KEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
KEE+++++ +++++ + K+RR+ +K
Sbjct: 330 KEEQEDDDFVEDDDDLQASLAKQRRLAQK 358
Score = 32.4 bits (74), Expect = 1.5
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK----------KKEE 968
++R+ +R+R R + + R +R R + E++++ KK +
Sbjct: 43 KKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQ 102
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
KKKE E KK K++E+ E E K K EE
Sbjct: 103 KKKEAERKKALLLDEKEKERAAEYTSEDLAGLKVGHKVEE 142
Score = 31.3 bits (71), Expect = 3.0
Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE---------KKKE 967
++R+ +R+R R + + R +R R + + G+++++++ KK++
Sbjct: 43 KKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKAWLKKSKKRQ 102
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+KK+ E +K + +KE + E+ K + EE E+ E+
Sbjct: 103 KKKEAERKKALLLDEKEKERAAEYTSEDLAGLKVGHKVEEFEEGEDV 149
Score = 30.5 bits (69), Expect = 5.8
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K K K+ + + K+ ++E E K++ EE E+ K R R +
Sbjct: 18 KPLPVPGAKPGSTKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERN 72
Score = 30.1 bits (68), Expect = 6.6
Identities = 13/108 (12%), Positives = 42/108 (38%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
+ + ++ ++++ + +R S +EE E KKK+ +
Sbjct: 174 VEKEKDKKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEIEGKKKKSDNLFTLDSGGSTD 233
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
++++++ +++ K ++ E + E K ++ ++K
Sbjct: 234 DEAEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKK 281
Score = 30.1 bits (68), Expect = 7.0
Identities = 32/118 (27%), Positives = 45/118 (38%), Gaps = 20/118 (16%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
KK + R RR + + R + R R R R R + R R R + E ++
Sbjct: 489 KKNQLERERREFLKEKERLKLLAEIRERIERERDRNDGKYSRMSAREREEYARPENDQRD 548
Query: 965 KKEEKKKEEEEKKKKE-GKT----------------KKEEKKKEEEEEKKKKKKEEEK 1005
K+E K + + K E G+ K K K EK+ KK EEEK
Sbjct: 549 KEEAYKPDVKLKYVDEFGRELTPKEAFKYLSHKFHGKGSGKMK---TEKRLKKIEEEK 603
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 35.7 bits (83), Expect = 0.049
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK--EEEKEEEEKKEEE 1014
E E+E ++ E+ E E+ KKE + EE K E EEE ++ K+ E E E E+++ E
Sbjct: 61 AEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALE 120
Query: 1015 E 1015
E
Sbjct: 121 E 121
Score = 33.8 bits (78), Expect = 0.18
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ +EE + + ++E E+ +++ E+ KKE E+ ++ K E E+E E KE E
Sbjct: 50 ERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEA 109
Query: 1017 EEEEKKRR 1024
E E +K R
Sbjct: 110 EIEAEKER 117
Score = 29.2 bits (66), Expect = 6.5
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK-------KKEEEKEEEEKKEE 1013
+E + K E E+ K+E + E ++E EE +++ KKE E+ EE K E
Sbjct: 36 DERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAE 95
Query: 1014 EEKEEEEKK 1022
E+E E K
Sbjct: 96 AEEELERIK 104
>gnl|CDD|218481 pfam05177, RCSD, RCSD region. Proteins contain this region include
C.elegans UNC-89. This region is found repeated in UNC-89
and shows conservation in prolines, lysines and glutamic
acids. Proteins with RCSD are involved in muscle M-line
assembly, but the function of this region RCSD is not
clear.
Length = 101
Score = 34.5 bits (78), Expect = 0.050
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
RR R + R +S +++E+ +K + K K +K+K K+ EE K ++
Sbjct: 14 RRSPSRTEKTEEDRATEEAKSPEKKEKSPEKVDGKPKSPTKKEKSPEKSATEEVKSPTKK 73
Query: 995 EKKKKKKEEEKEEEEKKEEEEKEE 1018
EK +K EE+ KKE +K+E
Sbjct: 74 EKSPEKVEEKPASPTKKERVQKKE 97
Score = 27.9 bits (61), Expect = 9.1
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
RR + E+ EE + E+ K E+K+K K + K ++E+ +K EE + KK
Sbjct: 14 RRSPSRTEKTEEDRATEEAKSPEKKEKSPEKVDGKPKSPTKKEKSPEKSATEEVKSPTKK 73
Query: 1012 EEEEKEEEEKKRRRIRRKR 1030
E+ ++ EEK +++R
Sbjct: 74 EKSPEKVEEKPASPTKKER 92
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 37.3 bits (86), Expect = 0.050
Identities = 21/73 (28%), Positives = 40/73 (54%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
+RRR R EE+ + ++E++ + + + +E+++EEEEE K E+E++E
Sbjct: 133 KRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEG 192
Query: 1009 EKKEEEEKEEEEK 1021
+ EK E +K
Sbjct: 193 GEDFTYEKSEVDK 205
Score = 31.2 bits (70), Expect = 3.7
Identities = 17/73 (23%), Positives = 42/73 (57%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+RRR EE+ + +++E + ++ +++++++EEEEE+ K +E++E+E
Sbjct: 133 KRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEG 192
Query: 1010 KKEEEEKEEEEKK 1022
++ ++ E K
Sbjct: 193 GEDFTYEKSEVDK 205
Score = 30.8 bits (69), Expect = 5.5
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
+RRR R R E+E+E+ EE +EEEE++++ E+++ E
Sbjct: 133 KRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEG 192
Query: 993 EEEKKKKKKEEEKEE 1007
E+ +K E +K +
Sbjct: 193 GEDFTYEKSEVDKTD 207
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA. Members
of this family are associated with type VII secretion of
WXG100 family targets in the Firmicutes, but not in the
Actinobacteria. This highly divergent protein family
consists largely of a central region of highly polar
low-complexity sequence containing occasional LF motifs
in weak repeats about 17 residues in length, flanked by
hydrophobic N- and C-terminal regions [Protein fate,
Protein and peptide secretion and trafficking].
Length = 150
Score = 35.4 bits (82), Expect = 0.051
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
K EKK E T ++E E +K+ EE+K+ +K +E+ E+EE K
Sbjct: 27 KPNRYEKKDIEINTDYL--QEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Score = 34.7 bits (80), Expect = 0.10
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK--------EEEEEKKKKKKE---EEK 1005
+EE E +K+ +++++ +K + ++E+ K E K KK+ E
Sbjct: 44 QEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQLFSSEY 103
Query: 1006 EEEEKKEEEEKEEEEKKR 1023
E+ E EEE KK
Sbjct: 104 EQTSSSSESTSEEETKKT 121
Score = 34.3 bits (79), Expect = 0.13
Identities = 11/52 (21%), Positives = 26/52 (50%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
K +KK +++ E +++ +E++K +K +E+ ++EE K
Sbjct: 27 KPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKN 78
Score = 33.5 bits (77), Expect = 0.22
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 961 EEEKKKEEKKKE---EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK----EEEEKKEE 1013
EKK E + EE + KE T +E+KK ++ K+K ++EE K E +
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENN 89
Query: 1014 EEKEEEEK 1021
K +++
Sbjct: 90 TVKATKKQ 97
Score = 32.7 bits (75), Expect = 0.40
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE----EEEKKEE 1013
E+++ E + ++E E K+ EE+KK ++ K+K ++EE + E E
Sbjct: 32 EKKDIEINTDYLQEETELDKELF---TPEEQKKITFQKHKEKPEQEELKNQLFSENATEN 88
Query: 1014 EEKEEEEKK 1022
+ +K+
Sbjct: 89 NTVKATKKQ 97
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the monomeric
yeast and human topo I. Topo I enzymes are divided into:
topo type IA (bacterial) and type IB (eukaryotic). Topo
I relaxes superhelical tension in duplex DNA by creating
a single-strand nick, the broken strand can then rotate
around the unbroken strand to remove DNA supercoils and,
the nick is religated, liberating topo I. These enzymes
regulate the topological changes that accompany DNA
replication, transcription and other nuclear processes.
Human topo I is the target of a diverse set of anticancer
drugs including camptothecins (CPTs). CPTs bind to the
topo I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of topo
I-DNA adducts. This family may represent more than one
structural domain.
Length = 215
Score = 36.2 bits (84), Expect = 0.052
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 966 KEEKKKEEEEKKKKEGK---TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
K+ KEE+ K K T+ K ++EEKK KEE+K + +KE+ E+E
Sbjct: 68 KKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEE 122
Score = 31.5 bits (72), Expect = 1.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
+ +KEEKK +E+KK K EK+K EEE
Sbjct: 95 KAQKEEKKAMSKEEKKAI----KAEKEKLEEEYG 124
Score = 30.4 bits (69), Expect = 3.4
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 958 EEEEEEKK---KEEKKKEEEEKKKKEGKTK 984
+ ++EEKK KEEKK + EK+K E +
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
Score = 29.6 bits (67), Expect = 6.6
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+ +K++KK K EE+K + EKE+ E++
Sbjct: 95 KAQKEEKKAMSK-EEKKAIKAEKEKLEEE 122
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 37.0 bits (86), Expect = 0.053
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE---KKEEEEKE 1017
E KE +K++E KK+ T K ++ + + KK ++E+ + K EE K
Sbjct: 350 AYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKR 409
Query: 1018 EEEKKRRR 1025
E K++R
Sbjct: 410 LENGKQKR 417
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil domain
of unknwon function.
Length = 126
Score = 34.9 bits (81), Expect = 0.056
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK--KKKEEEKEEEEKKEEEE 1015
+ + K++E +++EE K+++E KKEE+ +E + K K+ E ++ EKK EEE
Sbjct: 13 QLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEE 72
Query: 1016 KEEEEKKRRRIRRKR 1030
K+ ++K I+ +
Sbjct: 73 KKLRKEKEEEIKELK 87
Score = 33.0 bits (76), Expect = 0.27
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK-----EGKTKKEEKKKEEEEEKKK 998
+R RR K+ EEE +KKEE+ +E K K E K ++ EKK EE E+K +
Sbjct: 18 AKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEE-EKKLR 76
Query: 999 KKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
K+KEEE +E + + EE K E EK ++
Sbjct: 77 KEKEEEIKELKAELEELKAEIEKLEEKLEE 106
Score = 29.1 bits (66), Expect = 4.8
Identities = 25/95 (26%), Positives = 48/95 (50%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
+R RR ++R ++ + + +E E K++ +KK EEEKK ++
Sbjct: 18 AKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRK 77
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
K ++ ++ K E EE K + ++ E++ EE + EE
Sbjct: 78 EKEEEIKELKAELEELKAEIEKLEEKLEEYQPYEE 112
Score = 29.1 bits (66), Expect = 5.7
Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE----EEEKKRR 1024
+K+ E E+ + K+EE ++ EE K+++++ E+KEEE ++ + + E E KRR
Sbjct: 4 EKRREMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRR 63
Query: 1025 RIRRK 1029
R +K
Sbjct: 64 RAEKK 68
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4 (TAF4)
is one of several TAFs that bind TBP and is involved in
forming Transcription Factor IID (TFIID) complex. The
TATA Binding Protein (TBP) Associated Factor 4 (TAF4) is
one of several TAFs that bind TBP and are involved in
forming the Transcription Factor IID (TFIID) complex.
TFIID is one of seven General Transcription Factors (GTF)
(TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are
involved in accurate initiation of transcription by RNA
polymerase II in eukaryote. TFIID plays an important role
in the recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a specific
activator, is required only for the expression of subset
of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells, TAFs
have been found as components of other complexes besides
TFIID. Several TAFs interact via histone-fold (HFD)
motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other transcription
factors. TFIID has a histone octamer-like substructure.
TAF4 domain interacts with TAF12 and makes a novel
histone-like heterodimer that binds DNA and has a core
promoter function of a subset of genes.
Length = 212
Score = 36.2 bits (84), Expect = 0.056
Identities = 20/74 (27%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 952 RRRSGKEEEEEEKKKEEKKK-EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R S KE+E E + +K+ E+ ++E + K++E+++E K + E+ + +++
Sbjct: 96 RVDSEKEDERYEITSDVRKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKA 155
Query: 1011 KEEEEKEEEEKKRR 1024
KE +++E+EE + R
Sbjct: 156 KEMQKEEDEEMRHR 169
Score = 35.8 bits (83), Expect = 0.061
Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 9/59 (15%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
E+ ++EEEEK+ ++++ E + K + E+ ++K +E +KEE+E+ R R
Sbjct: 120 EQLEREEEEKR---------DEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 33.5 bits (77), Expect = 0.44
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
R++ R + R +R R R R + ++ ++K KE +K+E+EE + +
Sbjct: 113 RKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRA 170
Score = 31.1 bits (71), Expect = 1.9
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+ E EEE+K+ ++E E+ K E+ ++K + ++++
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKE 161
Score = 31.1 bits (71), Expect = 2.1
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEE 868
+ ++EE++K R R K E+ + K++ +E ++E+EE
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 30.4 bits (69), Expect = 4.2
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKK 893
+ E E+++K++EEE + R +++ + KEE+E+ +
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRH 168
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 37.0 bits (86), Expect = 0.056
Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT--KKEEKKKEEEEEKKKK 999
+ + + + + + +E K + + + KT + K EE+ +++
Sbjct: 860 KHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQER 919
Query: 1000 KKEEEKEEEEKKEEEEKEEEEKK 1022
+ EE K +E +++ K
Sbjct: 920 MPGADSPEELMKRAKEYQDKHKG 942
Score = 34.7 bits (80), Expect = 0.28
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 967 EEKKKEEEEKKKKEGKTKKEE-----KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
E + + + E T K + + E + K EEK +E+ + EE
Sbjct: 871 EGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELM 930
Query: 1022 KRRRIRRKR 1030
KR + + +
Sbjct: 931 KRAKEYQDK 939
Score = 34.3 bits (79), Expect = 0.39
Identities = 15/80 (18%), Positives = 29/80 (36%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+ + + E E + EE K ++ + K E + K EE+ +E
Sbjct: 860 KHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQER 919
Query: 1010 KKEEEEKEEEEKKRRRIRRK 1029
+ EE K+ + + K
Sbjct: 920 MPGADSPEELMKRAKEYQDK 939
>gnl|CDD|152107 pfam11671, Apis_Csd, Complementary sex determiner protein. This
family of proteins represents the complementary sex
determiner in the honeybee. In the honeybee, the
mechanism of sex determination depends on the csd gene
which produces an SR-type protein. Males are homozygous
while females are homozygous for the csd gene.
Heterozygosity generates an active protein which
initiates female development.
Length = 146
Score = 35.1 bits (80), Expect = 0.059
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
SR+R SR R R ++ + R R R R R R R R R
Sbjct: 2 SRKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREH 46
Score = 34.7 bits (79), Expect = 0.089
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
R+R R R R ++S + R R R R R R R R R +
Sbjct: 3 RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHK 47
Score = 33.2 bits (75), Expect = 0.28
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R R RSR R ++ + R R R R R R R R R +
Sbjct: 3 RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHK 47
Score = 33.2 bits (75), Expect = 0.28
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
RK+ RSR R + + R R R R R R R R R +
Sbjct: 3 RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHK 47
Score = 32.4 bits (73), Expect = 0.45
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
R+R R R R ++ + R R R R R R R R R +
Sbjct: 3 RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHK 47
Score = 32.0 bits (72), Expect = 0.66
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRR 923
R+R S E E+K + R R R RSR R R R R +
Sbjct: 3 RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHK 47
Score = 31.2 bits (70), Expect = 1.3
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
R+R R R R ++ + R R R R R R+ +E E K
Sbjct: 3 RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHK 47
Score = 31.2 bits (70), Expect = 1.4
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
R+R R + R + ++ R R R R R R R R R +
Sbjct: 3 RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSREHK 47
Score = 31.2 bits (70), Expect = 1.4
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
SR+R R R R ++ + R R R R R R R +E
Sbjct: 2 SRKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSRE 45
Score = 29.3 bits (65), Expect = 5.6
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 877 RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
R+R RS + E++ K E ++ R + R RSR R R R R +
Sbjct: 3 RKRYSRSREREQKSYKNE-------NSYREYRETSRERSRDRTERERSREHK 47
Score = 28.9 bits (64), Expect = 8.5
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
R+R R R R ++ + R R R R R R + E
Sbjct: 3 RKRYSRSREREQKSYKNENSYREYRETSRERSRDRTERERSRE 45
>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 36.9 bits (86), Expect = 0.060
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKT----KKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
K E + +E K E+KK T ++E KK +EE ++ + K+ E +E
Sbjct: 457 KSAENPLQSLKEFKPSNEKKKIDTESTAEMLEEEAKKDDEEVQETQLKEATELQEFMINN 516
Query: 1013 EE-----EKEEEEKK 1022
E+ ++ K
Sbjct: 517 EDLIEEAKELFGIKS 531
>gnl|CDD|177566 PHA03242, PHA03242, envelope glycoprotein M; Provisional.
Length = 428
Score = 36.7 bits (85), Expect = 0.061
Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 911 RRRRSR--RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE 968
RR RSR R R R R RR R R R R + E +E
Sbjct: 352 RRHRSRFYGHVRDARHRARSYIRRVRSSMRNSREAPYAGESDVGRDDDYASTDGEPIYDE 411
Query: 969 KKKEEEE 975
+E+E
Sbjct: 412 VAPDEDE 418
Score = 31.7 bits (72), Expect = 2.0
Identities = 17/67 (25%), Positives = 25/67 (37%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
RR R R R R R R RR R R R + E + + ++ + E E
Sbjct: 352 RRHRSRFYGHVRDARHRARSYIRRVRSSMRNSREAPYAGESDVGRDDDYASTDGEPIYDE 411
Query: 981 GKTKKEE 987
++E
Sbjct: 412 VAPDEDE 418
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in this
family are approximately 90 amino acids in length. There
are two completely conserved L residues that may be
functionally important.
Length = 70
Score = 33.1 bits (76), Expect = 0.063
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
K+KK+ ++ + K K KK+E K EEEK+EEEE+ + ++R+ +
Sbjct: 1 KQKKDEPVTLKDMLNADLLAKLKAKKKELKAEEEKREEEEEARKREERKEREK 53
Score = 32.7 bits (75), Expect = 0.099
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+KK E T K+ + + K KKKE + EEE+++EEEE + E+++ R + K
Sbjct: 2 QKKDEPVTLKDMLNADLLAKLKAKKKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 31.9 bits (73), Expect = 0.18
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
K K ++K+ + EEEK+++++E K EE K+ E+ K EE
Sbjct: 20 AKLKAKKKELKAEEEKREEEEEARKREERKEREKNKSFEE 59
Score = 29.2 bits (66), Expect = 1.8
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
K K+++ K EEEK+++E + +K E++KE E+ K
Sbjct: 23 KAKKKELKAEEEKREEEEEARKREERKEREKNK 55
Score = 28.1 bits (63), Expect = 4.3
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
K +++E K +EEK++EEEE +K+E + ++E+ K EE
Sbjct: 23 KAKKKELKAEEEKREEEEEARKREERKEREKNKSFEEL 60
Score = 27.3 bits (61), Expect = 9.3
Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
K KK+ +EEK++EEEE +K+++++E E+ K EE E E
Sbjct: 23 KAKKKELKAEEEKREEEEEARKREERKE--REKNKSFEELLNESE 65
>gnl|CDD|220611 pfam10169, Laps, Learning-associated protein. This is a family of
121-amino acid secretory proteins. Laps functions in the
regulation of neuronal cell adhesion and/or movement and
synapse attachment. Laps binds to the ApC/EBP (Aplysia
CCAAT/enhancer binding protein) promoter and activates
the transcription of ApC/EBP mRNA.
Length = 124
Score = 34.8 bits (80), Expect = 0.063
Identities = 23/76 (30%), Positives = 37/76 (48%)
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
R + RR+ R +R +E + K+ + K+ K K EE +EKKKK+
Sbjct: 4 RSKWRRKMRAIKRKKNAPKELARLKKALGLIDGNVLMKDVKDIATVKPAEEVKEKKKKEG 63
Query: 1002 EEEKEEEEKKEEEEKE 1017
E +E++EK E + K
Sbjct: 64 TESEEDDEKMEVDNKA 79
Score = 29.0 bits (65), Expect = 4.8
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
R + RR+ R +R+++ +E KK K + + ++ +E KKK
Sbjct: 4 RSKWRRKMRAIKRKKNAPKELARLKKALGLIDGNVLMKDVKDIATVKPAEEVKE---KKK 60
Query: 1000 KKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K+ E EE+++K E + + + ++ +R +
Sbjct: 61 KEGTESEEDDEKMEVDNKAAVRNKKTLRDQ 90
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends to
by Lys/Arg-rich, and is followed by a membrane-spanning
region. This is followed by an acidic low-complexity
region of variable length and a well-conserved C-terminal
domain of two tandem regions matched by pfam05036
(Sporulation related repeat), found in several cell
division and sporulation proteins. The role of FtsN as a
suppressor for other cell division mutations is poorly
understood; it may involve cell wall hydrolysis [Cellular
processes, Cell division].
Length = 298
Score = 36.2 bits (83), Expect = 0.064
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 7/88 (7%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE-------EEEK 996
+ + R + E+ E +K+ EKK ++ +T + +K E +E
Sbjct: 124 QMQADMRAAEKVLATAPSEQTVAVEARKQTAEKKPQKARTAEAQKTPVETEKIASKVKEA 183
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
K+K+K K+ E + + E K
Sbjct: 184 KQKQKALPKQTAETQSNSKPIETAPKAD 211
>gnl|CDD|116627 pfam08017, Fibrinogen_BP, Fibrinogen binding protein. Proteins in
this family bind to fibrinogen. Members of this family
includes the fibrinogen receptor, FbsA, which mediates
platelet aggregation.
Length = 393
Score = 36.8 bits (84), Expect = 0.064
Identities = 37/225 (16%), Positives = 90/225 (40%), Gaps = 13/225 (5%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGG-----EKEEEEGGGGG 873
R+R + + +R+ R +G E +++ E + +G +++ E G
Sbjct: 66 RQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGN 125
Query: 874 GRRRRRRRRSGK--------EEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRR 925
RR+R + + + + K G RR+R RS+ RR+R +
Sbjct: 126 VLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVENK 185
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK 985
+ RR+R + + RR+R + + ++++ + + + E + +
Sbjct: 186 SQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRD 245
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E K + +++++ E + + E +++ E K + + +R
Sbjct: 246 VENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERR 290
Score = 36.0 bits (82), Expect = 0.10
Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 6/226 (2%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGG 870
R R+ R + ++ ++ R G RR + E + + E + E G
Sbjct: 33 RRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQG 92
Query: 871 GGGGRRRR--RRRRSGKEEEEKKK----KEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRR 924
RR+R + G E +++ K G RR+R RS+ RR+R
Sbjct: 93 NVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAEN 152
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
+ + RR+R R + RR+R K + ++++ + + + E + +
Sbjct: 153 KSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQR 212
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E + + +++++ E K + E +++ E K + + +R
Sbjct: 213 DAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERR 258
Score = 35.6 bits (81), Expect = 0.12
Identities = 34/211 (16%), Positives = 86/211 (40%), Gaps = 6/211 (2%)
Query: 826 KKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR-RRRRSG 884
++ ++ R G RR + E + + E + E G RR+R RS
Sbjct: 32 ERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQ 91
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
E+++++ + ++R+R +S+ RR+R R + RR+R
Sbjct: 92 GNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDAE 151
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK-----KKK 999
+ + R ++ E + ++++ + + K +G + ++ E + + +++
Sbjct: 152 NKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVENKSQGNVLERRQ 211
Query: 1000 KKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ E + + E +++ E K + + +R
Sbjct: 212 RDAENRSQGNVLERRQRDVENKSQGNVLERR 242
Score = 34.1 bits (77), Expect = 0.39
Identities = 47/242 (19%), Positives = 97/242 (40%), Gaps = 11/242 (4%)
Query: 789 LLEITKQLTKAPEGGKVCITQIRLSRNR-RGRRRRRRKKKEEKKKWKRRGGGRRRRRGKK 847
+LE ++ + G V + R + NR +G RR++ E + G RR +
Sbjct: 62 VLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDVEN----KSQGNVLERRQRD 117
Query: 848 EEEKKKKKEEEEEGGEKEEEEGGGGGGRRRR--RRRRSGKEEEEKKK----KEGGGGRRR 901
E K + E + E G RR+R + G E +++ + G R
Sbjct: 118 VENKSQGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLER 177
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
R+R +S+ RR+R + + RR+R R + RR+R K +
Sbjct: 178 RQRDVENKSQGNVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGN 237
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
++++ + + + E + + E + + +++++ E K + E +++ E K
Sbjct: 238 VLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDAENK 297
Query: 1022 KR 1023
+
Sbjct: 298 SQ 299
Score = 29.8 bits (66), Expect = 9.1
Identities = 38/207 (18%), Positives = 77/207 (37%), Gaps = 6/207 (2%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGG 870
R R+ R + ++ ++ + G RR + E + + E + E + G
Sbjct: 129 RRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQG 188
Query: 871 GGGGRRRR--RRRRSGKEEEEKKK----KEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRR 924
RR+R + G E +++ + G RR+R +S+ RR+R
Sbjct: 189 NVLERRQRDVENKSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDVEN 248
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
+ + RR+R R + RR+R K + ++++ + + + + GK
Sbjct: 249 KSQGNVLERRQRDAENRSQGNVLERRQRDVENKSQGNVLERRQRDAENKSQVGQLIGKNP 308
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
K E + + K+ KK
Sbjct: 309 LLSKSIISRENNHSSQGDSNKQSFSKK 335
>gnl|CDD|222155 pfam13471, Transglut_core3, Transglutaminase-like superfamily.
This family includes uncharacterized proteins that are
related to the transglutaminase like domain pfam01841.
Length = 117
Score = 34.2 bits (79), Expect = 0.065
Identities = 15/50 (30%), Positives = 15/50 (30%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
RR RR R R R RR R RR R RS
Sbjct: 8 RRLLRRLGPARLRLALREASPGADPASAAEARRIGRAVRRASRLLPWRSK 57
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 34.7 bits (80), Expect = 0.066
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK-KEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
R+R R +++E +E K+ + +K K G + +KK E +K K EE +
Sbjct: 45 RKRYEEERDLRQQEFDELVTILKETSKSDKPIWKTGPIESPWEKKRNVREFQKTKAEEAQ 104
Query: 1006 EEEEKKEEEEKEEEEKKRRRIRRK 1029
+EE ++ EE EE + +R++
Sbjct: 105 KEELERIREELEEARAQSEEMRKE 128
Score = 32.0 bits (73), Expect = 0.58
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 938 RRRRRRRRRRRRRRRRRSGKEEEEEEKKKE--------EKKKEEEEKKKKEGKTKKEEKK 989
R+R R R++ +E K + E E++ ++ KTK EE +
Sbjct: 45 RKRYEEERDLRQQEFDELVTILKETSKSDKPIWKTGPIESPWEKKRNVREFQKTKAEEAQ 104
Query: 990 KEEEEEKKKKKKEEEKEEEEKKEE 1013
KEE E +++ +E + EE ++E
Sbjct: 105 KEELERIREELEEARAQSEEMRKE 128
Score = 30.1 bits (68), Expect = 2.6
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
R+R ++E + KE + K KT E E++ ++ +K + +E +
Sbjct: 45 RKRYEEERDLRQQEFDELVTILKETSKSDKPIWKTGPIESPWEKKRNVREFQKTKAEEAQ 104
Query: 1009 EKKEEEEKEEEEKKRRRIRRKR 1030
+++ E +EE E+ R + R
Sbjct: 105 KEELERIREELEEARAQSEEMR 126
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding domain
found on global transcription activator SNF2L1 proteins
and chromatin re-modelling proteins.
Length = 140
Score = 34.9 bits (81), Expect = 0.067
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 988 KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
KK E+EE + +K+ E+E E+ KKEEE +E + ++R+
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELREAKRQQRK 115
Score = 34.5 bits (80), Expect = 0.086
Identities = 14/37 (37%), Positives = 28/37 (75%)
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
KK E+EE++ +K+ E++ E+ K+EEE E ++++R+
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELREAKRQQRK 115
Score = 30.3 bits (69), Expect = 2.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
KK K ++E +K+ E+E ++ KKEEE E +
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELREAK 110
>gnl|CDD|233042 TIGR00598, rad14, DNA repair protein. All proteins in this family
for which functions are known are used for the
recognition of DNA damage as part of nucleotide excision
repair. This family is based on the phylogenomic analysis
of JA Eisen (1999, Ph.D. Thesis, Stanford University)
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 172
Score = 35.5 bits (82), Expect = 0.067
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+E +EEK++ E+ KEE ++KK E K K E ++ + KKE E E E
Sbjct: 92 SEEALDEEKERREESKEEMKEKKFEKKLK--ELRRAVRSSEYTNKKEGRVHEHEFGPETN 149
Query: 1016 KEEEEKKRRR 1025
EE+ RR
Sbjct: 150 GVEEDTYRRT 159
>gnl|CDD|135898 PRK06397, PRK06397, V-type ATP synthase subunit H; Validated.
Length = 111
Score = 34.1 bits (78), Expect = 0.069
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK---KKKKEEEKEEEEKKEE 1013
KE+EE K+ K E+E + KE K+K EEK K+ EEE E ++E EKK
Sbjct: 16 KEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKAV 75
Query: 1014 EEKEEEEKKRRRIRRK 1029
E + +++ I+ K
Sbjct: 76 EIINKAKQEASLIKLK 91
Score = 33.4 bits (76), Expect = 0.14
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
K+KEE +E K E + + +E K + EE+ KK ++E E KE E+K
Sbjct: 16 KEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKAV 75
Query: 1024 RRIRRKR 1030
I + +
Sbjct: 76 EIINKAK 82
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 34.6 bits (80), Expect = 0.071
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT 983
+ + R + ++++R+R ++RR R R + +E EK+K +K E+K K+ K
Sbjct: 69 AKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEK-RTRKNREKKFKRRQKE 127
Query: 984 K 984
K
Sbjct: 128 K 128
Score = 34.6 bits (80), Expect = 0.077
Identities = 18/62 (29%), Positives = 40/62 (64%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+ E+E +K+++KK++ KK++ + E+ KE E++K+ +K EK+ + +++E+
Sbjct: 69 AKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Query: 1015 EK 1016
EK
Sbjct: 129 EK 130
Score = 33.0 bits (76), Expect = 0.24
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
+ + R + ++++R+R GK+ + + E+ KE EK+K +T+K +KK + +
Sbjct: 69 AKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEK---RTRKNREKKFKRRQ 125
Query: 996 KKKKK 1000
K+K+K
Sbjct: 126 KEKEK 130
Score = 31.1 bits (71), Expect = 1.1
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
K ++E +E+E+KKK+ K+ KK+ + ++E KE EK++ K E+K +
Sbjct: 70 KVEKELLREKEKKKKR----KRPGKKRRI---ALRLRRERTKERAEKEKRTRKNREKKFK 122
Query: 1024 RRIRRK 1029
RR + K
Sbjct: 123 RRQKEK 128
Score = 31.1 bits (71), Expect = 1.2
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 881 RRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
+ + K E+E +++ +R+R KKRR + R R R + R + +R R+ R ++ +RR+
Sbjct: 66 KHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQ 125
Query: 941 RRR 943
+ +
Sbjct: 126 KEK 128
Score = 30.3 bits (69), Expect = 1.8
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
+ + R + ++++R+R ++RR R RR R + E+E+ +K +KK + +K+K
Sbjct: 69 AKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Query: 980 E 980
E
Sbjct: 129 E 129
Score = 28.8 bits (65), Expect = 7.6
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
++E +E+E++KK+K+ +++ + E +E +K +R R+ R
Sbjct: 72 EKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNR 117
Score = 28.4 bits (64), Expect = 8.1
Identities = 14/49 (28%), Positives = 31/49 (63%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
+++K++R ++RR R RR R + R + +R R+ R ++ +RR++ +
Sbjct: 80 EKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 28.4 bits (64), Expect = 8.1
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE---EEEKKKKKKEEEK 1005
+ + +E+E+++K+K KK + + +TK+ +K++ EKK K++++EK
Sbjct: 69 AKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Query: 1006 E 1006
E
Sbjct: 129 E 129
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo I
enzymes are divided into: topo type IA (bacterial) and
type IB (eukaryotic). Topo I relaxes superhelical tension
in duplex DNA by creating a single-strand nick, the
broken strand can then rotate around the unbroken strand
to remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the topological
changes that accompany DNA replication, transcription and
other nuclear processes. Human topo I is the target of a
diverse set of anticancer drugs including camptothecins
(CPTs). CPTs bind to the topo I-DNA complex and inhibit
re-ligation of the single-strand nick, resulting in the
accumulation of topo I-DNA adducts. In addition to
differences in structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 215
Score = 35.7 bits (83), Expect = 0.071
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+ +KE+KK +EEKK K+E+EK EE
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 34.5 bits (80), Expect = 0.16
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 966 KEEKKKEEEEKKKKEGK---TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
++ KEE+ KK K T + +EE+E+KK KEE+K +E+KE+ E+
Sbjct: 68 RKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 31.9 bits (73), Expect = 1.1
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 958 EEEEEEKK---KEEKKKEEEEKKKKEGK 982
EEE+E+KK KEEKK +EEK+K E
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEP 122
Score = 31.5 bits (72), Expect = 1.8
Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
EEE+EKKK +EEK K +EEKE+ E+
Sbjct: 95 EEEKEKKKAMSKEEK----KAIKEEKEKLEEP 122
Score = 30.3 bits (69), Expect = 3.8
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Query: 963 EKKKEEKK-KEEEEKKKKEGKTKKEEKKKEEEE 994
E++KE+KK +EEKK KEEK+K EE
Sbjct: 95 EEEKEKKKAMSKEEKKA-----IKEEKEKLEEP 122
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 36.7 bits (86), Expect = 0.072
Identities = 17/80 (21%), Positives = 41/80 (51%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+++ K ++ EK K + E + + +K E +KEEE+EK K+ E ++ E
Sbjct: 140 KKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEA 199
Query: 1011 KEEEEKEEEEKKRRRIRRKR 1030
+++++ + + K ++ +
Sbjct: 200 EKKKQSKNFDPKEGPVQIGK 219
Score = 35.6 bits (83), Expect = 0.17
Identities = 15/61 (24%), Positives = 36/61 (59%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
++ +EE +K E +KEEE++K + + +K + E++++ K +E + K+ +++
Sbjct: 165 IDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKE 224
Query: 1017 E 1017
E
Sbjct: 225 E 225
Score = 35.2 bits (82), Expect = 0.26
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ +EE +K E +K+EE+EK KE + KK E E++K+ K + ++ + ++ +K
Sbjct: 166 DDSKEELEKFEAQKEEEDEKLAKE--ALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDK 223
Query: 1017 EE 1018
EE
Sbjct: 224 EE 225
Score = 32.1 bits (74), Expect = 1.8
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
KEEE+E+ KE + ++ + +K+ ++K + K+ + KK KEE +E EEE +
Sbjct: 179 KEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMKEINEEERR 238
Score = 32.1 bits (74), Expect = 2.1
Identities = 17/73 (23%), Positives = 38/73 (52%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
E E + K++ + ++ +K G + + ++ +++ +K E +KEEE++K +E
Sbjct: 131 NNEIERDHLKKKHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEA 190
Query: 1017 EEEEKKRRRIRRK 1029
E KK ++K
Sbjct: 191 LEAMKKLEAEKKK 203
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved region.
Members of this family have very varied localisations
within the eukaryotic cell. pinin is known to localise at
the desmosomes and is implicated in anchoring
intermediate filaments to the desmosomal plaque. SDK2/3
is a dynamically localised nuclear protein thought to be
involved in modulation of alternative pre-mRNA splicing.
memA is a tumour marker preferentially expressed in human
melanoma cell lines. A common feature of the members of
this family is that they may all participate in
regulating protein-protein interactions.
Length = 131
Score = 34.4 bits (79), Expect = 0.077
Identities = 20/69 (28%), Positives = 42/69 (60%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
++ +EE + +EK++ E + K EE++K+E EE +K+K+E +E K+ E K E++
Sbjct: 21 QKFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKM 80
Query: 1022 KRRRIRRKR 1030
+ +++
Sbjct: 81 EDEKLQETW 89
Score = 30.5 bits (69), Expect = 1.7
Identities = 20/66 (30%), Positives = 39/66 (59%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R K E E+K EE++K+E E+ +KE + EE+++++ E +K ++K E+++ +E
Sbjct: 29 RLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQET 88
Query: 1011 KEEEEK 1016
E
Sbjct: 89 WHEHNL 94
Score = 28.2 bits (63), Expect = 9.7
Identities = 20/110 (18%), Positives = 46/110 (41%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
K + R + + +RR ++ + ++ R R+ +R RRR++ + E++ +
Sbjct: 22 KFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKME 81
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E+ ++ E + + K + E EK +E++ E E
Sbjct: 82 DEKLQETWHEHNLALANFIRTKTKPHLYYRPWRLTPETEKLLDEQQREAE 131
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 34.5 bits (80), Expect = 0.078
Identities = 18/67 (26%), Positives = 46/67 (68%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E+E +K++ E +K E+E +K + K +K+ E +KK+K+ ++K +E ++++++ ++
Sbjct: 24 EKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQ 83
Query: 1019 EEKKRRR 1025
+ +KR++
Sbjct: 84 DLQKRQQ 90
Score = 33.7 bits (78), Expect = 0.18
Identities = 19/72 (26%), Positives = 46/72 (63%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E+E ++++ E +K E+E +K KE K E EKK+K+ +++ +E ++K+++ ++
Sbjct: 24 EKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQ 83
Query: 1018 EEEKKRRRIRRK 1029
+ +K+++ +K
Sbjct: 84 DLQKRQQEELQK 95
Score = 32.9 bits (76), Expect = 0.29
Identities = 16/64 (25%), Positives = 45/64 (70%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+ + E +K E++ ++ +EK +K+ T E ++++E+E +KK +E ++++++ +++ +K
Sbjct: 28 KKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQK 87
Query: 1017 EEEE 1020
++E
Sbjct: 88 RQQE 91
Score = 31.8 bits (73), Expect = 0.76
Identities = 18/75 (24%), Positives = 50/75 (66%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
GK +++ +K+ +K++ E EK +KE + KE+ +K+ + ++++EKE ++K +E +
Sbjct: 16 GKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQ 75
Query: 1016 KEEEEKKRRRIRRKR 1030
+++++ ++ +R++
Sbjct: 76 RKQQKLQQDLQKRQQ 90
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 34.7 bits (80), Expect = 0.079
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
EE+K ++ +E+ K+KK+ K KK++KKK+ ++ KKKK
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 33.9 bits (78), Expect = 0.15
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
EE+K ++ KE+ ++KK++ K KK++KKK ++ KKKK
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 33.5 bits (77), Expect = 0.18
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
EE+K K+ +K ++KK+++++KKKKKK+ K+ +KK
Sbjct: 96 EEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
Score = 28.9 bits (65), Expect = 7.7
Identities = 16/41 (39%), Positives = 30/41 (73%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
EE++ K+ K K ++KK++++++KKKKKK +K ++KK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 28.5 bits (64), Expect = 8.7
Identities = 15/40 (37%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 985 KEEKK--KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
EE+K K+ +EK K+KK+++K++++KK++ K+ +KK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function (DUF1754).
This is a eukaryotic protein family of unknown function.
Length = 90
Score = 33.5 bits (77), Expect = 0.084
Identities = 19/68 (27%), Positives = 42/68 (61%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+KKK++KKK+ + K++ + ++EEK E + K+ ++ E+ ++ E++++ E E+
Sbjct: 20 KKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGMNLTEAERA 79
Query: 1023 RRRIRRKR 1030
+RKR
Sbjct: 80 FEEAQRKR 87
Score = 30.9 bits (70), Expect = 0.74
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
K KK KK++KKK++ + K++ E+E+EE+ E + KE EE
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEE 57
Score = 28.9 bits (65), Expect = 3.2
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 4/55 (7%)
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
K K+ + KKKK KK++KK + +EE +K+EEEK E +E +E+E+ ++
Sbjct: 13 KGKKIDVKKKK----KKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEK 63
Score = 28.2 bits (63), Expect = 6.7
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
K K K ++KKK KKKKK + ++E +KEEEEK E +
Sbjct: 11 KLKGKKIDVKKKKK-----KKKKKNKSKEEVVTEKEEEEKSSAESDLKE 54
>gnl|CDD|164925 PHA02524, 43A, DNA polymerase subunit A; Provisional.
Length = 498
Score = 36.5 bits (84), Expect = 0.084
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 21/110 (19%)
Query: 489 KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI-----PVRMLQD 543
K K ++ G V EP G Y ++ + D SLYPSI++ NI I P R+
Sbjct: 370 KASPKQSFPGAYVKEPVPGGY-RYGLSFDLTSLYPSILRLLNISPEMIAGMFSPARL--- 425
Query: 544 SDITTLCEYLPEHQVD------------TGILPSEIKKLVESRRQVKALM 581
D P Q G+LP+E +K+ R+ K +M
Sbjct: 426 EDYINKVAPKPSDQFSCAPNGMMYKKGVVGVLPNETEKVFLQRKSEKKMM 475
>gnl|CDD|184060 PRK13453, PRK13453, F0F1 ATP synthase subunit B; Provisional.
Length = 173
Score = 34.9 bits (80), Expect = 0.087
Identities = 15/55 (27%), Positives = 35/55 (63%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
+R R ++ ++ E+ K +K EEE K+K +T++E +K E+ + + ++++E+
Sbjct: 49 KRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQ 103
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 36.0 bits (84), Expect = 0.087
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
GK+ + K+ K E++K+ G E KK+ E+ + + E E+ E
Sbjct: 36 GKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGLWERLAFE 94
Score = 32.6 bits (75), Expect = 0.91
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK-------KKKEEEKEEEE 1009
+ + K EE K + KK K+ K EE+K+ KKE E E
Sbjct: 18 ELASDLLKALEELKVKYLGKKGVLTDLLKKLGKLSPLEERKEVGALINELKKEVEDAITE 77
Query: 1010 KKEEEEKEEEEKK 1022
E E ++
Sbjct: 78 LTPELEAAGLWER 90
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1 protein
homologues. SDA1 is a Saccharomyces cerevisiae protein
which is involved in the control of the actin
cytoskeleton. The protein is essential for cell viability
and is localised in the nucleus.
Length = 317
Score = 35.8 bits (83), Expect = 0.087
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
+ ++E E E ++E++E KK + EE +E+EEE ++++ E ++E
Sbjct: 120 DVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 35.4 bits (82), Expect = 0.12
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
G+ + E K+ E E+E++K E K +E EE E+ +++ EE+E E +KE
Sbjct: 115 EGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 35.0 bits (81), Expect = 0.15
Identities = 14/42 (33%), Positives = 27/42 (64%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
E+EEEK + KK +E+ ++ + ++E ++EE E +K+K
Sbjct: 132 SEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 33.9 bits (78), Expect = 0.43
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+ E +K+ E E+EE+K + K KE+ +E EE +++ EEE+ E EK+
Sbjct: 115 EGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 32.7 bits (75), Expect = 0.99
Identities = 21/67 (31%), Positives = 39/67 (58%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE+E+ + E E +K+ + ++ EE+K E ++ K+ EE EE+E++ EE+E
Sbjct: 107 EEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEE 166
Query: 1018 EEEKKRR 1024
E +K +
Sbjct: 167 AEAEKEK 173
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 35.3 bits (82), Expect = 0.089
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EE K K + ++ E++ KK+E +KE+ + E + K K +++ K +K E +
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Score = 33.0 bits (76), Expect = 0.48
Identities = 12/52 (23%), Positives = 27/52 (51%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
++ E++ K+ E +KE ++E K K + KK+K + ++ E + +
Sbjct: 112 AQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Score = 32.6 bits (75), Expect = 0.70
Identities = 9/55 (16%), Positives = 33/55 (60%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
EE + K + ++ +++ +K++ G+ +K +++ + + K +KK + + ++ + +
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQH 158
Score = 30.3 bits (69), Expect = 3.7
Identities = 6/46 (13%), Positives = 24/46 (52%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
+R ++ +E E++K ++++ + K ++ + + +K + +
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQH 158
Score = 29.5 bits (67), Expect = 7.3
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
E++ KK E E+E+ ++E K K + +K+ + +K + + +
Sbjct: 116 EQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Score = 29.5 bits (67), Expect = 7.4
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E EE+ E +K+ EE K K + E++ K+ E +K+K + + + K +K +
Sbjct: 89 GELEEEHVEHARKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRK 148
Query: 1019 EEKKRRRIRRKR 1030
++ +
Sbjct: 149 PRAQKPEPQHTP 160
Score = 29.5 bits (67), Expect = 7.6
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
+R + ++ E ++EK E K K + KK + + ++ E + +
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins P2,
P0, L11, and 28S rRNA. P1 and P2 are the only proteins in
the ribosome to occur as multimers, always appearing as
sets of heterodimers. Recent data indicate that
eukaryotes have four copies (two heterodimers), while
most archaeal species contain six copies of L12p (three
homodimers) and bacteria may have four or six copies (two
or three homodimers), depending on the species.
Experiments using S. cerevisiae P1 and P2 indicate that
P1 proteins are positioned more internally with limited
reactivity in the C-terminal domains, while P2 proteins
seem to be more externally located and are more likely to
interact with other cellular components. In lower
eukaryotes, P1 and P2 are further subdivided into P1A,
P1B, P2A, and P2B, which form P1A/P2B and P1B/P2A
heterodimers. Some plant species have a third P-protein,
called P3, which is not homologous to P1 and P2. In
humans, P1 and P2 are strongly autoimmunogenic. They play
a significant role in the etiology and pathogenesis of
systemic lupus erythema (SLE). In addition, the
ribosome-inactivating protein trichosanthin (TCS)
interacts with human P0, P1, and P2, with its primary
binding site located in the C-terminal region of P2. TCS
inactivates the ribosome by depurinating a specific
adenine in the sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 33.8 bits (78), Expect = 0.089
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 1001 KEEEKEEEEKKEEEEKEEEE 1020
E ++EEKKEEEE+E ++
Sbjct: 77 AAAEAKKEEKKEEEEEESDD 96
Score = 32.7 bits (75), Expect = 0.23
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 992 EEEEKKKKKKEEEKEEEE 1009
E KK++KKEEE+EE +
Sbjct: 78 AAEAKKEEKKEEEEEESD 95
Score = 31.9 bits (73), Expect = 0.41
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 955 SGKEEEEEEKKKEEKKKEEEE 975
+ E ++E+KKEE+++E ++
Sbjct: 76 AAAAEAKKEEKKEEEEEESDD 96
Score = 30.4 bits (69), Expect = 1.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 1000 KKEEEKEEEEKKEEEEKEEEE 1020
E K+EE+K+EEEE+ +++
Sbjct: 77 AAAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 1.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 956 GKEEEEEEKKKEEKKKEEEEK 976
E KKEEKK+EEEE+
Sbjct: 73 AAAAAAAEAKKEEKKEEEEEE 93
Score = 29.6 bits (67), Expect = 2.3
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 994 EEKKKKKKEEEKEEEEKKEEEE 1015
+ K+EEK+EEE++E ++
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDD 96
Score = 29.2 bits (66), Expect = 3.0
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGG 872
E KK++K+EEEE E+ +++ G G
Sbjct: 76 AAAAEAKKEEKKEEEE--EESDDDMGFG 101
Score = 29.2 bits (66), Expect = 3.4
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGGG 873
E +K++KKEEEEE E ++ G G
Sbjct: 77 AAAEAKKEEKKEEEEE----ESDDDMGFG 101
>gnl|CDD|223945 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit
[Energy production and conversion].
Length = 294
Score = 35.8 bits (83), Expect = 0.092
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKK-KEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
+ R GK EEE+ K EE + E + K K E +
Sbjct: 218 EEAKLAVETGYWPLYRYEPGKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLTKSNPELIQ 277
Query: 996 KKKKKKEEEKEEEEK 1010
K +K +E EE ++
Sbjct: 278 KLQKDVDERWEELKR 292
Score = 33.8 bits (78), Expect = 0.36
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 967 EEKKKEEEEKKK-KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
E K EEE+ K G E+ E EE K K + ++ +++ ++ EE KR
Sbjct: 235 EPGKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLTKSNPELIQKLQKDVDERWEELKR 292
Score = 32.3 bits (74), Expect = 1.0
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK-KKKEEEKEEEEKKEEEEKEEEEKK 1022
+ K +EE+ K G E+ E EE K K E ++ +K+ +E+ EE K+
Sbjct: 235 EPGKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLTKSNPELIQKLQKDVDERWEELKR 292
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 36.1 bits (83), Expect = 0.095
Identities = 19/72 (26%), Positives = 38/72 (52%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E E++E KE KKE + K ++E + E++ ++EEE + ++ K +E E + E
Sbjct: 274 ELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLE 333
Query: 1018 EEEKKRRRIRRK 1029
++ +R+
Sbjct: 334 SPKELSSFEKRQ 345
Score = 36.1 bits (83), Expect = 0.10
Identities = 21/68 (30%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 955 SGKEEEEEEKKKEEKKK--EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
SG++EE++E+ E + + +EK KK+ E + +E +++ KK+ + K EEE +E
Sbjct: 240 SGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEE 299
Query: 1013 EEEKEEEE 1020
++E+E+++
Sbjct: 300 DDEQEDDQ 307
Score = 36.1 bits (83), Expect = 0.11
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+EEE+E + E E+E E ++ E+ +E E+ ++KK EEE+ EEK+ E
Sbjct: 118 EEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVE 177
Query: 1015 EKEEEEKKRRRI 1026
+ E+K +
Sbjct: 178 QATREKKFDKSG 189
Score = 33.8 bits (77), Expect = 0.57
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
S + E+ +EE++++E + + + + E E + +E +++EEKK EE
Sbjct: 107 SDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEE 166
Query: 1015 EKEEEEK 1021
E+ EEK
Sbjct: 167 EEAGEEK 173
Score = 33.4 bits (76), Expect = 0.76
Identities = 17/73 (23%), Positives = 40/73 (54%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ ++E KK+ + K EEE+++ E + ++E++ E K K E E + + +E
Sbjct: 279 EPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKEL 338
Query: 1017 EEEEKKRRRIRRK 1029
EK++ +++++
Sbjct: 339 SSFEKRQAKLKQQ 351
Score = 33.0 bits (75), Expect = 0.85
Identities = 17/75 (22%), Positives = 37/75 (49%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E+ +++++EE+ + E++ + + E E + E+ EE++ +EEE
Sbjct: 110 DSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEA 169
Query: 1016 KEEEEKKRRRIRRKR 1030
EE+E + R K+
Sbjct: 170 GEEKESVEQATREKK 184
Score = 33.0 bits (75), Expect = 1.0
Identities = 15/65 (23%), Positives = 38/65 (58%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
G E+EE+ ++ + E+ K++ K K E E+++ K+ +++ + + +EE+E
Sbjct: 239 GSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDE 298
Query: 1016 KEEEE 1020
+++E+
Sbjct: 299 EDDEQ 303
Score = 32.7 bits (74), Expect = 1.1
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+ E+ EE+++E+E + + + E E E + ++E E++E+K+ EE+E
Sbjct: 109 MDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEE 168
Query: 1018 EEEKKRRRIRRKR 1030
E+K + R
Sbjct: 169 AGEEKESVEQATR 181
Score = 32.3 bits (73), Expect = 1.5
Identities = 15/69 (21%), Positives = 33/69 (47%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+ + + + ++EEEE + E + +E + + E + ++ +E E EE++ E
Sbjct: 106 GSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKME 165
Query: 1018 EEEKKRRRI 1026
EEE +
Sbjct: 166 EEEAGEEKE 174
Score = 32.3 bits (73), Expect = 1.5
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+E++++K + + E+++ KE K+ + K EEE+E+ ++++++ EEE + +
Sbjct: 259 DPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMD 318
Query: 1016 KEEEEKK 1022
K + ++
Sbjct: 319 KVKLDEP 325
Score = 31.5 bits (71), Expect = 2.9
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK------------ 1001
+ E E+ +E + +EE+K ++E +++E ++ EKK K
Sbjct: 141 FNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEM 200
Query: 1002 ----EEEKEEEEKKEEEEKEEEE 1020
E + EEE +E + E+
Sbjct: 201 NEFLEATEAEEEAALGDEDDFED 223
Score = 31.1 bits (70), Expect = 3.4
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E+ + ++EE++ E E + + + + + + E + E E +EE+K EEEE
Sbjct: 109 MDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEE 168
Query: 1016 KEEE----EKKRRRIRRK 1029
EE E+ R +
Sbjct: 169 AGEEKESVEQATREKKFD 186
Score = 31.1 bits (70), Expect = 4.1
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+EEE E+K+ ++ E+K K G K K E E + + EEE ++ + E+
Sbjct: 165 EEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDY 224
Query: 1017 EEEEK 1021
+++
Sbjct: 225 FQDDS 229
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 36.1 bits (84), Expect = 0.097
Identities = 10/67 (14%), Positives = 35/67 (52%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
++++++ + +++ ++ ++ ++E+E+KK+ KE EK ++ ++
Sbjct: 132 DDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDE 191
Query: 1017 EEEEKKR 1023
++ E R
Sbjct: 192 DDSEALR 198
Score = 34.6 bits (80), Expect = 0.32
Identities = 6/67 (8%), Positives = 29/67 (43%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
++ + ++++ + + ++E++ + ++ +E+E+K+E ++
Sbjct: 118 LNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKE 177
Query: 1017 EEEEKKR 1023
E+
Sbjct: 178 LEKLSDD 184
Score = 34.2 bits (79), Expect = 0.38
Identities = 9/71 (12%), Positives = 30/71 (42%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
K+ + K K +++ K + +KK EKK +++ ++ +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQ 129
Query: 1010 KKEEEEKEEEE 1020
++++ ++++
Sbjct: 130 ADDDDDDDDDD 140
Score = 33.4 bits (77), Expect = 0.70
Identities = 8/77 (10%), Positives = 31/77 (40%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
+++ + K +KK ++E K+ + K K ++ K +
Sbjct: 70 TESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQ 129
Query: 1005 KEEEEKKEEEEKEEEEK 1021
++++ ++++ +++
Sbjct: 130 ADDDDDDDDDDDLDDDD 146
Score = 33.0 bits (76), Expect = 0.80
Identities = 7/65 (10%), Positives = 28/65 (43%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ + ++ +++ +E E++++ ++EEK+E ++ E+
Sbjct: 124 IDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSD 183
Query: 1017 EEEEK 1021
+++
Sbjct: 184 DDDFV 188
Score = 32.7 bits (75), Expect = 1.0
Identities = 10/66 (15%), Positives = 26/66 (39%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K ++ + + KKK + K K +++ K + +K E++ +++
Sbjct: 57 IFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDD 116
Query: 1017 EEEEKK 1022
+ K
Sbjct: 117 DLNYVK 122
Score = 32.7 bits (75), Expect = 1.1
Identities = 12/66 (18%), Positives = 30/66 (45%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+ ++ + KKK + K K ++K K+E + KK +K+ ++++ +
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKD 123
Query: 1017 EEEEKK 1022
+ +
Sbjct: 124 IDVLNQ 129
Score = 32.7 bits (75), Expect = 1.1
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EEE KKK +K + + K TK+E K+ E ++K ++ ++ ++
Sbjct: 10 LAAEEEAKKKLKKLAAKSKSKGF--ITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTD 67
Query: 1017 EEEEKKRRRIRRKR 1030
+ E + + K
Sbjct: 68 DATESDIPKKKTKT 81
Score = 32.7 bits (75), Expect = 1.2
Identities = 10/65 (15%), Positives = 25/65 (38%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
++ K ++ + K K K + KKK ++E + +K E++
Sbjct: 53 DQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
Query: 1018 EEEKK 1022
+++
Sbjct: 113 DKDDD 117
Score = 32.7 bits (75), Expect = 1.2
Identities = 10/66 (15%), Positives = 25/66 (37%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ + + E + KTK K + KKK K+E ++ +++
Sbjct: 53 DQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNAL 112
Query: 1017 EEEEKK 1022
++++
Sbjct: 113 DKDDDL 118
Score = 32.3 bits (74), Expect = 1.4
Identities = 10/66 (15%), Positives = 29/66 (43%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
++ ++ + + K++ + K K KKK ++E KK E++ ++ +
Sbjct: 62 MVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Query: 1017 EEEEKK 1022
++ +
Sbjct: 122 KDIDVL 127
Score = 31.9 bits (73), Expect = 2.1
Identities = 9/66 (13%), Positives = 27/66 (40%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ +++ K K + KK+ K + + KK E++ K + ++ +
Sbjct: 72 SDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQAD 131
Query: 1017 EEEEKK 1022
++++
Sbjct: 132 DDDDDD 137
Score = 31.5 bits (72), Expect = 2.6
Identities = 6/66 (9%), Positives = 31/66 (46%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
++ + ++++ + + +++E+ + +++ ++E+++++E K
Sbjct: 117 DLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK 176
Query: 1017 EEEEKK 1022
E E+
Sbjct: 177 ELEKLS 182
Score = 31.5 bits (72), Expect = 2.6
Identities = 5/66 (7%), Positives = 32/66 (48%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+++++ ++ + + + + +++ + +E+ ++++ +E+E+
Sbjct: 112 LDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEE 171
Query: 1017 EEEEKK 1022
++E K+
Sbjct: 172 KKEAKE 177
Score = 30.7 bits (70), Expect = 4.0
Identities = 9/60 (15%), Positives = 31/60 (51%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+ ++++ ++ ++++E + ++E+KKE +E +K ++ +E+ E +
Sbjct: 141 DLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQA 200
Score = 30.7 bits (70), Expect = 4.2
Identities = 7/68 (10%), Positives = 35/68 (51%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
K+++ K + + ++ + ++ +++++ + ++++ ++ + ++EE
Sbjct: 112 LDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEE 171
Query: 1015 EKEEEEKK 1022
+KE +E +
Sbjct: 172 KKEAKELE 179
Score = 30.7 bits (70), Expect = 4.4
Identities = 12/66 (18%), Positives = 25/66 (37%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K++ E+ + K + KKK + K K K++ + + + K
Sbjct: 45 KKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSK 104
Query: 1017 EEEEKK 1022
+ E+K
Sbjct: 105 KAEKKN 110
Score = 30.7 bits (70), Expect = 4.7
Identities = 11/63 (17%), Positives = 27/63 (42%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
++ + E +++ K + K KK+ ++E KK E+K +K ++
Sbjct: 61 GMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNY 120
Query: 1017 EEE 1019
++
Sbjct: 121 VKD 123
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 33.5 bits (77), Expect = 0.097
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+ E ++ E+ KEE E+ KE + + E +E EEE +K +E +E E+ EEE +
Sbjct: 13 KKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAE 72
Query: 1017 EEEEKKRRRIRR 1028
E + +
Sbjct: 73 EILAEAEKEASA 84
Score = 32.0 bits (73), Expect = 0.38
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E KK E EE E+ K+E + +E ++E E ++ ++E EK +E EE +E EE
Sbjct: 10 REIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEE 69
Query: 1021 KKRR 1024
+
Sbjct: 70 EAEE 73
Score = 29.7 bits (67), Expect = 2.5
Identities = 15/71 (21%), Positives = 37/71 (52%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EE +E+ ++ K+ EE ++ + ++E +K +E ++ +++ EE+ EE E E++
Sbjct: 24 EEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEAS 83
Query: 1019 EEKKRRRIRRK 1029
+ +
Sbjct: 84 AILSKAAEGKV 94
Score = 29.7 bits (67), Expect = 2.8
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
S EE EE K++ E+ +E ++ +E + EE+ ++ +E ++ +EE +EE E+
Sbjct: 15 AEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEI 74
Query: 1012 EEEEKEEEE 1020
E ++E
Sbjct: 75 LAEAEKEAS 83
Score = 28.2 bits (63), Expect = 8.4
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE-----EKKRRRIRR 1028
E KK E +E ++ +EE E+ K+ EE E ++ EEE E+ E+ R
Sbjct: 10 REIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEE 69
Query: 1029 KR 1030
+
Sbjct: 70 EA 71
>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional.
Length = 159
Score = 34.6 bits (80), Expect = 0.098
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Query: 957 KEEEEEEKKKEEKKKEEEEKK--KKEGKTKKEEKKKEEE---EEKKKKKKEEEKEEEEKK 1011
K +E+++K +E K K E E K K+EGK EE K + E EE K+ EE E+
Sbjct: 47 KADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERA 106
Query: 1012 EEEEKEEEEKKRRRIRRK 1029
+ E + E+EK I+ +
Sbjct: 107 KLEAQREKEKAEYEIKNQ 124
Score = 31.2 bits (71), Expect = 1.7
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 953 RRSGKEEEEEEKKKEEKKKEE-EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE----- 1006
+ GK+ EE K K E EE ++ +E E K E + EK+K + E + +
Sbjct: 70 KEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLA 129
Query: 1007 -EEEKKEEEEKEEEEKKRRRI 1026
K EE +E + RR I
Sbjct: 130 VLLSSKALEESIDESEHRRLI 150
Score = 30.8 bits (70), Expect = 2.2
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK--EEKKKEEEEEKKKKKKEEEKEEE 1008
R + E E + K+E KK EE K K E ++ +E +E + ++ K E ++E+E
Sbjct: 56 RELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKE 115
Query: 1009 EKKEEEEKE 1017
+ + E + +
Sbjct: 116 KAEYEIKNQ 124
Score = 29.6 bits (67), Expect = 5.2
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK----KKKEEEKEEEEKKEE 1013
+ + E + +K +E++KK +E K K E + K +EE KK K + E EE +E
Sbjct: 35 DSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKE 94
Query: 1014 EEKEEE---EKKRRRIRRKR 1030
+E + E+ + +R++
Sbjct: 95 AHEEADLIIERAKLEAQREK 114
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 36.3 bits (83), Expect = 0.099
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
R+ R R+ R+ R K+ +++ + KKE KK K+GK E +EE + K
Sbjct: 438 DRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEELELIKA 497
Query: 1001 KEEEKEEEEKKEEEE--KEEEEKKRRRIRRK 1029
+E+ E+ + + + K E+ KK R++++K
Sbjct: 498 DDEDDEQLDHFDMKSILKAEKFKKNRKLKKK 528
Score = 33.6 bits (76), Expect = 0.60
Identities = 16/94 (17%), Positives = 48/94 (51%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
R+ R R+ R+ R+ ++ + S + +++++ +K K+ + ++ +K+E + +
Sbjct: 438 DRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEELELIKA 497
Query: 993 EEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
++E ++ + + K E+ +K + KK+
Sbjct: 498 DDEDDEQLDHFDMKSILKAEKFKKNRKLKKKASN 531
Score = 30.9 bits (69), Expect = 4.0
Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK----KK 971
R+ R R+ R+ R+ ++ + + ++ ++ + GK E +E+ K
Sbjct: 438 DRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEELELIKA 497
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
++E+ ++ + K K E+ ++ +K KK+ EE
Sbjct: 498 DDEDDEQLDHFDMKSILKAEKFKKNRKLKKKASNLEE 534
Score = 30.5 bits (68), Expect = 5.0
Identities = 11/64 (17%), Positives = 32/64 (50%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+++ E E+ ++ E+++ + + ++ K + + + K KK+ K+ ++ K E+
Sbjct: 426 SDDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERT 485
Query: 1018 EEEK 1021
K
Sbjct: 486 AASK 489
Score = 29.8 bits (66), Expect = 9.2
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+ ++ + + ++++E +KE + KK K+ + KKE +K KK K + KEE
Sbjct: 433 TIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEEL 492
Query: 1015 E 1015
E
Sbjct: 493 E 493
>gnl|CDD|217838 pfam04004, Leo1, Leo1-like protein. Members of this family are
part of the Paf1/RNA polymerase II complex. The Paf1
complex probably functions during the elongation phase
of transcription. The Leo1 subunit of the yeast
Paf1-complex binds RNA and contributes to complex
recruitment. The subunit acts by co-ordinating
co-transcriptional chromain modifications and helping
recruitment of mRNA 3prime-end processing factors.
Length = 312
Score = 35.6 bits (82), Expect = 0.100
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
+ R + ++ R RRRR+ R + + + R + + E+E+E
Sbjct: 237 HEKREREKKEEQKLRARRRRQNREKMKNKPPNRPGHGSGSDSNVAKAATTYSEDEDEGSD 296
Query: 967 EEKKKEEEEKKKKEGK 982
E +K +E KK+ G+
Sbjct: 297 CETRKAKEVKKEGAGR 312
Score = 32.9 bits (75), Expect = 0.85
Identities = 25/104 (24%), Positives = 41/104 (39%), Gaps = 15/104 (14%)
Query: 939 RRRRRRRRRRRRRRRRSGKE---EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE--- 992
R+ R R+R+ K ++ E +K E++K+EE+K + + + EK K +
Sbjct: 209 HRKLTRNLATRQRKSGGVKITIVGKDPEHEKREREKKEEQKLRARRRRQNREKMKNKPPN 268
Query: 993 ---------EEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
K E E+E E K +E KK R
Sbjct: 269 RPGHGSGSDSNVAKAATTYSEDEDEGSDCETRKAKEVKKEGAGR 312
Score = 30.6 bits (69), Expect = 4.8
Identities = 14/73 (19%), Positives = 29/73 (39%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK 985
+R R ++ ++ R RRRR+ R + + + K + E +
Sbjct: 237 HEKREREKKEEQKLRARRRRQNREKMKNKPPNRPGHGSGSDSNVAKAATTYSEDEDEGSD 296
Query: 986 EEKKKEEEEEKKK 998
E +K +E +K+
Sbjct: 297 CETRKAKEVKKEG 309
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase Y
sorting pathway.
Length = 356
Score = 36.0 bits (83), Expect = 0.10
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
E + + +E KKEEE + + +KE+ + E + +++KE+ + EE + E
Sbjct: 63 SNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYN 122
Query: 1017 EEEEKK 1022
+
Sbjct: 123 LFDRNN 128
Score = 33.7 bits (77), Expect = 0.47
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+ E + E E + + E K ++E E EE +K+ + + E ++E+E+ E
Sbjct: 53 SKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLEN 112
Query: 1019 EEKKRRR 1025
EE + R
Sbjct: 113 EELQYLR 119
Score = 32.9 bits (75), Expect = 0.86
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E +E KK+EE+ +E E+ +KE E + +EE+++ + +E + E + +
Sbjct: 71 ELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQ 130
Query: 1019 EEKKRR 1024
E +
Sbjct: 131 LEDNLQ 136
Score = 32.2 bits (73), Expect = 1.3
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK-KEEEEKEEE 1019
E E E +E KK+E + ++ +E E+E E + +EEK + E E+ +
Sbjct: 60 VEISNYEALDSELDELKKEE--ERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQY 117
Query: 1020 EKKRRRIRRK 1029
++ R
Sbjct: 118 LREYNLFDRN 127
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 36.2 bits (83), Expect = 0.10
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK-KKKKKEEEKEE 1007
+ + + K +EEEE+KK + ++KK K K KKEE+ E KKKKK+ K++
Sbjct: 526 NKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQK 585
Query: 1008 EEKKEE 1013
+ ++
Sbjct: 586 KLDSKK 591
Score = 33.9 bits (77), Expect = 0.47
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 17/90 (18%)
Query: 958 EEEEEEKKKEE------KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK---------- 1001
+EE + +K+ E K E E K K+K +++K +EEEE+KK K
Sbjct: 497 DEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKL 556
Query: 1002 -EEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
++ K KKEE+ + ++KK++ ++K+
Sbjct: 557 YKKMKYSNAKKEEQAENLKKKKKQIAKQKK 586
Score = 33.5 bits (76), Expect = 0.72
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
EE++ EE + ++E + + +G E + +++ K K KK + EEEE+K+ +
Sbjct: 491 EEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMS 550
Query: 1020 EKKRR 1024
K+++
Sbjct: 551 NKQKK 555
Score = 32.7 bits (74), Expect = 1.3
Identities = 16/72 (22%), Positives = 43/72 (59%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E +++ K + KK + +++++E K K ++++ KK K K+EE+ + ++K++
Sbjct: 520 EADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKK 579
Query: 1019 EEKKRRRIRRKR 1030
+ K++++ K+
Sbjct: 580 QIAKQKKLDSKK 591
Score = 31.2 bits (70), Expect = 3.6
Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKE-----GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
E +E+ +EE + +KE K E + +++ K K K+ + +EEE++
Sbjct: 482 DVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEEEEE 541
Query: 1012 EEEEKEEEEKKRRRIRRK 1029
++ + K++++ +K
Sbjct: 542 KKLKMIMMSNKQKKLYKK 559
>gnl|CDD|215038 PLN00040, PLN00040, Protein MAK16 homolog; Provisional.
Length = 233
Score = 35.1 bits (81), Expect = 0.11
Identities = 21/99 (21%), Positives = 45/99 (45%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
R R+ + R + R+ +R +E + ++ + EK E+E ++ + T +
Sbjct: 121 RMRKLALKTREKIVTTPRKLLKRERRRESKAQKAAQLEKSIEKELLERLKSGTYGDIYNF 180
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+ K + EE +E EE+ + +K KK+ R+ +
Sbjct: 181 PSKSYNKVLEMEEVEEAEEELPKSDKNPNSKKKSRVHVE 219
Score = 34.4 bits (79), Expect = 0.20
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 14/113 (12%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK--------- 977
R R+ + R + R+ +R RRR S ++ + +K EK+ E K
Sbjct: 121 RMRKLALKTREKIVTTPRKLLKRERRRESKAQKAAQLEKSIEKELLERLKSGTYGDIYNF 180
Query: 978 -----KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
K + ++ E+ +EE + K ++K + E E E E K
Sbjct: 181 PSKSYNKVLEMEEVEEAEEELPKSDKNPNSKKKSRVHVEIEYEDEIEYKSLMS 233
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 36.1 bits (84), Expect = 0.11
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
G+E E E + EE KKE ++ ++K + + E +KKEEE EK K K ++ ++ K+ +
Sbjct: 87 GEENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDS 146
Query: 1016 KEEEEKKRRRIRRK 1029
E K ++
Sbjct: 147 NLSEALKGLNYKKN 160
Score = 34.6 bits (80), Expect = 0.30
Identities = 13/57 (22%), Positives = 36/57 (63%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
EE + E + ++ +K+ ++ EEK ++ + E +++EE+ E+ + + +K +++ +K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKY 144
Score = 32.3 bits (74), Expect = 1.4
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
E +E+ +K+K+ EK ++E K+ E E K +K+ +E E++
Sbjct: 399 WLHLVAELKEDIDAYQKEKKGLEKAINS---LEKEIKQLEAEIKALEKEIKELEKQLTNI 455
Query: 1013 E------------------EEKEEEEKKRRRIRRKR 1030
E E ++E E K RI R+
Sbjct: 456 EPTADEINKLLKAYGFGNFELEKEAEDKGYRIVREG 491
Score = 32.3 bits (74), Expect = 1.5
Identities = 12/58 (20%), Positives = 33/58 (56%)
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
EE + + + +++ K+ EE+ ++ + E EK+EEE ++ + K ++ ++ ++
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYD 145
Score = 30.0 bits (68), Expect = 7.9
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
++E+ K K++ + K++ ++EKK E+ +K+ ++ E E K E+E +E
Sbjct: 388 KKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKE 447
Query: 1019 EEKKRRRIRR 1028
EK+ I
Sbjct: 448 LEKQLTNIEP 457
Score = 30.0 bits (68), Expect = 9.3
Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 15/90 (16%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE---------------GKTKKEEKKKEEE 993
+ + + E++EEE +K + K ++ KK K +EK +E
Sbjct: 110 KIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKEL 169
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
+ EE K + + K
Sbjct: 170 KSVILNASSLLSLEELKAKIKTLFSSNKPE 199
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 36.2 bits (84), Expect = 0.11
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
+EE + E+ K+ + EE EK ++ E+ E +E+ ++E ++ +K
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKK 499
Score = 35.8 bits (83), Expect = 0.13
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
EE ++ KE EE ++K + ++ + +EE +K+ KK ++ E +
Sbjct: 453 EEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVD 504
Score = 35.1 bits (81), Expect = 0.23
Identities = 13/61 (21%), Positives = 32/61 (52%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
EEE K ++ ++ K+ +E ++K E+ ++ + +EE ++E K+ ++ E
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503
Query: 1020 E 1020
+
Sbjct: 504 D 504
Score = 34.3 bits (79), Expect = 0.38
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
EE ++ +E E+ +++ + E+ + +EE KK+ K+ +K E
Sbjct: 452 LEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503
Score = 33.1 bits (76), Expect = 0.92
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE- 1015
+E ++ K+ EE ++K + ++ + +EE +++ KK ++ E + EE
Sbjct: 453 EEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEEL 512
Query: 1016 --KEEEEKKRRRIRRKR 1030
EE +K + K+
Sbjct: 513 GINEETYEKLEALLAKK 529
Score = 30.4 bits (69), Expect = 6.9
Identities = 16/68 (23%), Positives = 29/68 (42%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EE ++K ++ E+ + ++E K + +K K+ E EE EE E+ E
Sbjct: 465 LSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINEETYEKLEA 524
Query: 1017 EEEEKKRR 1024
+K
Sbjct: 525 LLAKKNNF 532
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 34.6 bits (80), Expect = 0.11
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
+ +R + + R + ++ E E KE KK+E+E KEGK KK E
Sbjct: 79 EEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKE--LIKEGKKPYYLKKSE---- 132
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
KK ++K +E KK ++ + EKKR++ K
Sbjct: 133 -IKKLVLKKKFDELKKSKQLDKALEKKRKKNAGK 165
Score = 33.0 bits (76), Expect = 0.38
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
R EE E+ KK + +E+EE K+ K K + ++ +++ KE +K+E+E +
Sbjct: 61 REKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIK 120
Query: 1013 EEEK 1016
E +K
Sbjct: 121 EGKK 124
Score = 32.6 bits (75), Expect = 0.46
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK--KKEEKK 970
+ + +R + + R + + + R R + +++ + +E ++ KK E K
Sbjct: 75 TKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIK 134
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
K +KK E K K+ K E++ KK KE
Sbjct: 135 KLVLKKKFDELKKSKQLDKALEKKRKKNAGKE 166
Score = 31.1 bits (71), Expect = 1.8
Identities = 25/108 (23%), Positives = 51/108 (47%), Gaps = 4/108 (3%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK----EEKKKEEEEKKKKEGK 982
++ R+R +++ + R R SGK ++ +K ++ +++E E+ +K K
Sbjct: 14 KKPVSRKRDIIEVEKKKPKVRDPRFDSLSGKLNLDKFRKNYKFLDDYREKEIEELEKALK 73
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K+ ++KEE + + K K + K E E +E KK+ + K
Sbjct: 74 KTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIKE 121
>gnl|CDD|221526 pfam12316, Dsh_C, Segment polarity protein dishevelled (Dsh) C
terminal. This domain family is found in eukaryotes,
and is typically between 177 and 207 amino acids in
length. The family is found in association with
pfam00778, pfam02377, pfam00610, pfam00595. The segment
polarity gene dishevelled (dsh) is required for pattern
formation of the embryonic segments. It is involved in
the determination of body organisation through the
Wingless pathway (analogous to the Wnt-1 pathway).
Length = 202
Score = 34.9 bits (80), Expect = 0.11
Identities = 17/78 (21%), Positives = 20/78 (25%), Gaps = 11/78 (14%)
Query: 861 GGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGG-----------GRRRRRRKKRRR 909
G + E G R R R+ E +K G G R RR R
Sbjct: 67 GSQHSEGSRSSGSNRSDGERSRAADGREGGRKSGGSGSESEHTSRSGSRRSGGRRAPSER 126
Query: 910 SRRRRSRRRRRRRRRRRR 927
S S R
Sbjct: 127 SGPPPSEGSVRSSLSHPS 144
Score = 33.0 bits (75), Expect = 0.47
Identities = 19/87 (21%), Positives = 24/87 (27%), Gaps = 5/87 (5%)
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
G G + R SG + +G R R+ R+S S R RR
Sbjct: 63 SGSAGSQHSEGSRSSGS-----NRSDGERSRAADGREGGRKSGGSGSESEHTSRSGSRRS 117
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRS 955
RR R R S
Sbjct: 118 GGRRAPSERSGPPPSEGSVRSSLSHPS 144
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the maturation
of the 18S rRNA and for 40S ribosome production.
Length = 809
Score = 36.1 bits (84), Expect = 0.11
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
R ++ R RR R EEEE+ K+ + +E E + + ++ EEEEE
Sbjct: 268 AERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEE 327
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEE 1020
++EE ++++ +EEEE +
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDLS 352
Score = 35.0 bits (81), Expect = 0.26
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEG---------KTKKEEKKKEEEEEKKKKKKEEE 1004
R+ K + EEK E +++ ++ +TK EE+ +EE E+ KK E E
Sbjct: 219 RTVKPPPKPPMTPEEKDDEYDQRVRELTFDRRAQPTDRTKTEEELAKEEAERL-KKLEAE 277
Query: 1005 KEEEEKKEEEEKEEEEKK 1022
+ + EEE+ EEEE
Sbjct: 278 RLRRMRGEEEDDEEEEDS 295
Score = 33.0 bits (76), Expect = 0.91
Identities = 21/68 (30%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
++EEEEE +++ +E+++ +E + + +EE+EE +E+ ++E+ +EEE
Sbjct: 319 GEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEE------DEDSDDEDDEEEE 372
Query: 1015 EKEEEEKK 1022
E+E+E+KK
Sbjct: 373 EEEKEKKK 380
Score = 32.7 bits (75), Expect = 1.4
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
G+E+EEEE+ + + EE++ E + + + EEE+E E+E ++E EEE
Sbjct: 318 QGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDE------EDEDSDDEDDEEE 371
Query: 1015 EKEEEEKKRRRIRRK 1029
E+EE+EKK+++
Sbjct: 372 EEEEKEKKKKKSAES 386
Score = 31.1 bits (71), Expect = 4.0
Identities = 11/53 (20%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
++ K EEE K+E ++ ++ E ++ ++ E+E++E++E+ ++ ++
Sbjct: 255 DRTKTEEELAKEE------AERLKKLEAERLRRMRGEEEDDEEEEDSKESADD 301
Score = 31.1 bits (71), Expect = 4.2
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 976 KKKKEGKTKKEEKK------KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K T +E+ +E +++ + + K EEE +EE + ++ + R+RR
Sbjct: 223 PPPKPPMTPEEKDDEYDQRVRELTFDRRAQPTDRTKTEEELAKEEAERLKKLEAERLRRM 282
Query: 1030 R 1030
R
Sbjct: 283 R 283
Score = 30.7 bits (70), Expect = 5.1
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 11/76 (14%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKK-----------EGKTKKEEKKKEEEEEKKKKKKEEEK 1005
K EEE K++ E+ K+ E ++ + E +K+ ++E E
Sbjct: 258 KTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLG 317
Query: 1006 EEEEKKEEEEKEEEEK 1021
+ EE +EEEE +++
Sbjct: 318 QGEEDEEEEEDGVDDE 333
Score = 30.0 bits (68), Expect = 9.0
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 961 EEEKKKEE----KKKEEE-----------EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
EEE KEE KK E E ++++++ K ++ E E + +
Sbjct: 260 EEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQG 319
Query: 1006 EEEEKKEEEEKEEEE 1020
EE+E++EE+ ++E+
Sbjct: 320 EEDEEEEEDGVDDED 334
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 34.9 bits (81), Expect = 0.11
Identities = 14/59 (23%), Positives = 35/59 (59%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
KK +K+K ++ K+ ++G +++ K+ EE K +K E ++E +++ E +++ +
Sbjct: 18 KKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIVAQ 76
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 36.2 bits (84), Expect = 0.11
Identities = 26/194 (13%), Positives = 47/194 (24%), Gaps = 6/194 (3%)
Query: 842 RRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGG---G 898
+ + + ++ K E+ E EE E+ ++ +
Sbjct: 89 KLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFD 148
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR---RRRRRRRRRS 955
R K R RR + +
Sbjct: 149 LSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSK 208
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E E + + + E + E + E E + + + EK EE E
Sbjct: 209 ILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVRE 268
Query: 1016 KEEEEKKRRRIRRK 1029
E EK + K
Sbjct: 269 ILEIEKALGDVLSK 282
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 35.0 bits (81), Expect = 0.12
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE-EEKE 1017
EE+ ++ EE+ +E E ++ E + ++E ++E E E +++ + E E K +E EE+
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERY 60
Query: 1018 -----EEEKKRRRIR 1027
+ E +RRI+
Sbjct: 61 LRLQADFENYKRRIQ 75
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 34.7 bits (80), Expect = 0.12
Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 27/125 (21%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK----------------- 971
R++++ R + R+R +R+ R+++ K +KKK
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINIIGNPIIAKNWDKKKTLAQNYKRLGLAADPNT 61
Query: 972 ----EEEEKKKKEGKTKKEEKKKEE------EEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
+ + K + KK E + E +E K+EEEK E K+ EEE E K
Sbjct: 62 AARTDLLIQDKPIPELKKGEARIERDDKGNPLDEPLDSKEEEEKPEVVKQLEEEASEPAK 121
Query: 1022 KRRRI 1026
K RR+
Sbjct: 122 KPRRL 126
>gnl|CDD|219890 pfam08537, NBP1, Fungal Nap binding protein NBP1. NBP1 is a
nuclear protein which has been shown in Saccharomyces
cerevisiae to be essential for the G2/M transition of
the cell cycle.
Length = 313
Score = 35.6 bits (82), Expect = 0.12
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 887 EEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
+ + +K+E G R R K RR R R++ + + + R +RR RR +R
Sbjct: 15 KTDGRKREYGSLDEPRERSKVRRKRARKTSKSYLKVSKPNTDRASELKRRTERRGPPTKR 74
Query: 947 RRRR 950
RR+R
Sbjct: 75 RRQR 78
Score = 34.8 bits (80), Expect = 0.17
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 884 GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
+ + +K++ G R R K RR+ R+ S+ + + R +RR RR
Sbjct: 13 WIKTDGRKREYGSLDEPRERSKVRRKRARKTSKSYLKVSKPNTDRASELKRRTERRGPPT 72
Query: 944 RRRRRR 949
+RRR+R
Sbjct: 73 KRRRQR 78
Score = 33.7 bits (77), Expect = 0.46
Identities = 31/185 (16%), Positives = 64/185 (34%), Gaps = 10/185 (5%)
Query: 822 RRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRR 881
R+++ + + R RR+R K + K + + + + G +RRR+
Sbjct: 18 GRKREYGSLDEPRERSKVRRKRARKTSKSYLKVSKPNTDRASELKRRTERRGPPTKRRRQ 77
Query: 882 R----------SGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRR 931
R S + K + R + R R +++ +
Sbjct: 78 RTFWNNIKSVFSNDNRDLSKMQNASINYRLPNSPADEEQEDAKDRILRSEAFKKKVLELK 137
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE 991
+R RR + R R R + +++ K EE+ + E + + +KK +
Sbjct: 138 YNKRMLEELRRGSQDGRSNRDRNPSLNLDRVILLQKKIDKLEEKLAELEQELQSTQKKLQ 197
Query: 992 EEEEK 996
+EK
Sbjct: 198 FVKEK 202
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 36.1 bits (84), Expect = 0.12
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 956 GKEEEEEEKKKEEKKKE--EEEKKKKEGKTKKE---EKKKEEEEEKKKKKKEEEKEEEEK 1010
G + E + EK+ E E+E + E K E K EE EK+K+K E + + K
Sbjct: 808 GLIDLAAELARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAK 867
Query: 1011 KEEEEKEEEE 1020
EE +
Sbjct: 868 LEERLAVLKA 877
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 34.9 bits (80), Expect = 0.12
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE---KKKEEEEEKKKKKK 1001
R + + G + E E +K EK+ + + K K E KE EEK K +
Sbjct: 92 VRETYEKLKEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEV 151
Query: 1002 EEEKEEEEKKEEEEKEEE 1019
+ + EE ++ E E
Sbjct: 152 IKGEPLEEVIDKLEYPVE 169
Score = 30.6 bits (69), Expect = 2.9
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
E ++ K + +E ++K +G E K E E+ K E E E K
Sbjct: 125 VEVLKKIKGEHFPMDKELLEEKLKG-----EVIKGEPLEEVIDKLEYPVESPADLLHEIK 179
Query: 1017 EEE 1019
Sbjct: 180 IHL 182
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 35.8 bits (82), Expect = 0.13
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
E+ EK+ ++ +E+ +K ++G+ K E+ KE +E KKKK K+ ++ +E
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKE 258
Score = 33.5 bits (76), Expect = 0.75
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKE-----------GKTKKEEKKKEEEEEKKKKKK-EEEKE 1006
+E++ + E ++ +E KK E T+KE ++EE+ KK + EE K
Sbjct: 176 KEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKV 235
Query: 1007 EEEKKEEEEKEEEEKKRRRIRRK 1029
EE K+ +E K+++ KK + + ++
Sbjct: 236 EEVKEGDEGKKKKTKKVKEVTKE 258
Score = 32.7 bits (74), Expect = 1.1
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
+E+ EE K EE K+ +E KKKK K K E KE E + K K ++ KEE
Sbjct: 224 KKADEDGEEPKVEEVKEGDEGKKKKTKKVK--EVTKEYEVQNKHKPLWTRDPKDVTKEE 280
Score = 30.8 bits (69), Expect = 5.2
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
KE +E+++ +K E+ E+ K E + +E KK++ ++ K+ KE E + + K
Sbjct: 213 KEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHK 266
Score = 30.0 bits (67), Expect = 9.0
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+ K +E+ E+ K E+ KE +E KKK+ K KE K+ E + K K + ++ K+E
Sbjct: 223 TKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEE 280
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 35.8 bits (83), Expect = 0.13
Identities = 17/69 (24%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE------EKKKKKKEEEKEEEEKKEE 1013
E + E K+++++ K+K K K ++ KK+ ++ E + +E E ++ KK++
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKK 60
Query: 1014 EEKEEEEKK 1022
++K++++KK
Sbjct: 61 KKKKKKKKK 69
Score = 35.1 bits (81), Expect = 0.18
Identities = 15/65 (23%), Positives = 40/65 (61%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E E E K+++++ +++ KKK K+KK+ + + + +E + ++ K++++K+
Sbjct: 4 ENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKK 63
Query: 1018 EEEKK 1022
+++KK
Sbjct: 64 KKKKK 68
Score = 34.3 bits (79), Expect = 0.39
Identities = 14/73 (19%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGK-----TKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+ ++++++ K++ KK+ ++ KK + + +E E ++ KKK+++K++++
Sbjct: 8 NEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKK 67
Query: 1010 KKEEEEKEEEEKK 1022
KK E +
Sbjct: 68 KKNLGEAYDLAYD 80
Score = 33.1 bits (76), Expect = 0.71
Identities = 11/71 (15%), Positives = 31/71 (43%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
++ K++ ++ KK + + E + + ++ +++++KKKKKK++ E
Sbjct: 19 QKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLA 78
Query: 1013 EEEKEEEEKKR 1023
+
Sbjct: 79 YDLPVVWSSAA 89
Score = 32.0 bits (73), Expect = 1.9
Identities = 11/59 (18%), Positives = 31/59 (52%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
E + + + K++ K+K +++ KK KK+ + ++ E + +E + ++ ++K
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKK 59
Score = 31.2 bits (71), Expect = 3.0
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEG----KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
E E ++ E K+ ++KKKK+ K E + + +K
Sbjct: 41 AELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLG 100
Query: 1014 EEKEEEEKK 1022
E+E K+
Sbjct: 101 NWPEQEWKQ 109
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 34.3 bits (79), Expect = 0.13
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+E + K+ E E KK++ + +K +K+ + +E K + + E + K E E ++E
Sbjct: 37 QESPQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKE 96
Query: 1020 EK 1021
+
Sbjct: 97 KL 98
Score = 33.5 bits (77), Expect = 0.27
Identities = 14/65 (21%), Positives = 35/65 (53%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
++E +K +++ K +E K + +GK + + + E E KK+K +++++ E++
Sbjct: 57 QKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAFNKKQQEYEKDLNRR 116
Query: 1020 EKKRR 1024
E +
Sbjct: 117 EAEEE 121
Score = 30.4 bits (69), Expect = 2.9
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
++E + K+ + + + E K + E KK++ KK++E EK+ ++ EEE
Sbjct: 62 KMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVNAFNKKQQEYEKDLNRREAEEE 121
Query: 1016 KE 1017
++
Sbjct: 122 QK 123
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The outer
doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end of
the spoke stalk and helps in anchoring the radial spoke
to the outer doublet. It is thought that radial spokes
regulate the activity of inner arm dynein through protein
phosphorylation and dephosphorylation.
Length = 288
Score = 35.4 bits (82), Expect = 0.13
Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EEEE + +++ + E+++ E ++ EE E +++ EEKE +K+++E K+
Sbjct: 149 LEEEELAELRQQQRQFEQRRNA--ELAETQRLEEAE----RRRREEKERRKKQDKERKQR 202
Query: 1019 EEKKRRRI 1026
E++ +I
Sbjct: 203 EKETAEKI 210
Score = 30.4 bits (69), Expect = 5.3
Identities = 16/60 (26%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKE----GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
EEEE + +++++ E+++ E + ++ E+++ EE+E++KK+ +E K+ E++ E
Sbjct: 149 LEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAE 208
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 35.6 bits (83), Expect = 0.13
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+R+ ++ E E E+ KE +E+ K KKE K + ++KK+K++ + + + K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 1011 K 1011
Sbjct: 90 P 90
Score = 34.4 bits (80), Expect = 0.27
Identities = 10/62 (16%), Positives = 31/62 (50%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
+R++ ++ ++ +E +++ + +++E K KK+EK++ + + K K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 1000 KK 1001
+
Sbjct: 90 PR 91
>gnl|CDD|235984 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.
Length = 484
Score = 35.8 bits (83), Expect = 0.14
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 692 IDGVYKYMLLLKKKKYAA--------LSISKLSNGKMICSQEIKGVDVVRRDWSQLASEA 743
+ G + Y+LL + K AA LSI K+ NG + + E DVV +W + +
Sbjct: 165 VKGGFAYLLLTEDKLIAALDPNGFRPLSIGKMKNGAYVVASETCAFDVVGAEWVR-DVQP 223
Query: 744 GKFVISQILDE----QSYTD 759
G+ VI I DE SYT
Sbjct: 224 GEIVI--IDDEGIQYDSYTT 241
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 34.5 bits (80), Expect = 0.14
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
KEEEEE + +EE +EE E+ ++E + K+ + E + +K+ E + EE KK EK
Sbjct: 3 KEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAIEK 62
Score = 29.9 bits (68), Expect = 4.4
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
EEK++EE+ ++EEE ++E E+ +EE EE K + E E ++ E+E EE
Sbjct: 1 EEKEEEEELEDEEEALEEE-----LEELEEEIEELKDRLLRLLAEFENYRKRTEREREEA 55
Query: 1022 KRRRI 1026
K+ I
Sbjct: 56 KKYAI 60
Score = 29.1 bits (66), Expect = 7.0
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E+K++E + + EE+ EEE E+ +++ EE K+ + E E R+R R+R
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRL----LAEFENYRKRTERER 52
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 35.7 bits (83), Expect = 0.14
Identities = 12/72 (16%), Positives = 27/72 (37%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
+ + K+ + ++ +EEK +EE K K +K + + + +
Sbjct: 4 NGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRA 63
Query: 1007 EEEKKEEEEKEE 1018
KK E + +
Sbjct: 64 NRLKKVEALRAK 75
Score = 33.4 bits (77), Expect = 0.70
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK--KKKEEEKEEEEKKEEE 1014
E E K KK + K+ +E K KEE K K +K ++E +
Sbjct: 1 AESNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQ 60
Query: 1015 EKEEEEKK 1022
+ KK
Sbjct: 61 YRANRLKK 68
>gnl|CDD|146930 pfam04534, Herpes_UL56, Herpesvirus UL56 protein. In herpes
simplex virus type 2, UL56 is thought to be a
tail-anchored type II membrane protein involved in
vesicular trafficking. The C terminal hydrophobic region
is required for association with the cytoplasmic
membrane, and the N terminal proline-rich region is
important for the translocation of UL56 to the Golgi
apparatus and cytoplasmic vesicles.
Length = 198
Score = 34.7 bits (79), Expect = 0.14
Identities = 16/28 (57%), Positives = 16/28 (57%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R R RR R RR RRR RR RRRS
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRRSF 102
Score = 33.9 bits (77), Expect = 0.26
Identities = 16/28 (57%), Positives = 16/28 (57%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
R RSRR R RR RRR RR RRR
Sbjct: 73 CERGRSRRAAWRAARRARRRAERRARRR 100
Score = 33.2 bits (75), Expect = 0.48
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRR 932
+R RSRR R RR RRR RR RRR
Sbjct: 74 ERGRSRRAAWRAARRARRRAERRARRR 100
Score = 32.4 bits (73), Expect = 0.82
Identities = 15/26 (57%), Positives = 16/26 (61%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRR 934
R R RR+ R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 32.0 bits (72), Expect = 1.0
Identities = 15/28 (53%), Positives = 15/28 (53%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
R R RR R RR RRR RR RRR
Sbjct: 73 CERGRSRRAAWRAARRARRRAERRARRR 100
Score = 32.0 bits (72), Expect = 1.0
Identities = 16/29 (55%), Positives = 16/29 (55%)
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R R RR R RR RRR RR RRR G
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRRSFG 103
Score = 31.6 bits (71), Expect = 1.3
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRR 939
R R RR R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 31.2 bits (70), Expect = 1.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRR 943
R R RR R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 31.2 bits (70), Expect = 1.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRR 944
R R RR R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 31.2 bits (70), Expect = 1.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRR 945
R R RR R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 31.2 bits (70), Expect = 1.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRR 946
R R RR R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 31.2 bits (70), Expect = 1.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRR 947
R R RR R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 31.2 bits (70), Expect = 1.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRR 948
R R RR R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 31.2 bits (70), Expect = 1.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRR 949
R R RR R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 31.2 bits (70), Expect = 1.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRR 950
R R RR R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 31.2 bits (70), Expect = 1.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRR 951
R R RR R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 31.2 bits (70), Expect = 1.8
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRR 952
R R RR R RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
Score = 31.2 bits (70), Expect = 2.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRR 929
R + RR+ R +RR RRR RR RRR
Sbjct: 75 RGRSRRAAWRAARRARRRAERRARRR 100
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is a
small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis. In
most cases, it resides in potential 5' UTRs of homologues
of the yjdF gene whose function is unknown. However, in
Streptococcus thermophilus, a yjdF RNA motif is
associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound that
structurally resembles the ligand bound by other yjdF
RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 33.8 bits (78), Expect = 0.15
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 945 RRRRRRRRRRSGKEEEEEEK---KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
++ +R +R +E ++ K ++ K E E+ K+E K + +EKK+EE+E K++ K+
Sbjct: 63 KKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEEKERKRQLKQ 122
Query: 1002 EEEKE 1006
+++K
Sbjct: 123 QKKKA 127
Score = 31.5 bits (72), Expect = 0.95
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 951 RRRRSGKEEEEEEKKKEEKK---KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
+ + K +++KK K+ + +E KK TK ++ K E E K++KK+ K
Sbjct: 50 KFTEAVKVSIKKQKKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSK-- 107
Query: 1008 EEKKEEEEKEEEEKKRRRIRRKR 1030
EKKEEE++ + + K+++ + K
Sbjct: 108 -EKKEEEKERKRQLKQQKKKAKH 129
Score = 30.3 bits (69), Expect = 2.4
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
++ +R +R+ + ++ + ++ K + E+ K+E KKK K KKEE+K+ + +
Sbjct: 63 KKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQE---KKKRSKEKKEEEKERKRQ 119
Query: 995 EKKKKKKEEEK 1005
K++KKK + +
Sbjct: 120 LKQQKKKAKHR 130
Score = 29.1 bits (66), Expect = 6.1
Identities = 21/72 (29%), Positives = 43/72 (59%), Gaps = 8/72 (11%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEE----EEEKKKEEKKKEEEEKKKKEGKTKKEEKK 989
++ +R +R+ + ++ S K ++ E E+ K+EKKK +EKK++E KE K+
Sbjct: 63 KKINPKRLQRQAAKEVKKPGISTKAQQALKLEHERNKQEKKKRSKEKKEEE----KERKR 118
Query: 990 KEEEEEKKKKKK 1001
+ ++++KK K +
Sbjct: 119 QLKQQKKKAKHR 130
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6 contains
KOW motif that has an extra ribosomal role as an
oncogenic. KOW domain is known as an RNA-binding motif
that is shared so far among some families of ribosomal
proteins, the essential bacterial transcriptional
elongation factor NusG, the eukaryotic chromatin
elongation factor Spt5, the higher eukaryotic KIN17
proteins and Mtr4. .
Length = 152
Score = 34.1 bits (79), Expect = 0.15
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
K K + K+KK+ K KK+E + EE++KK EE KE+++ +
Sbjct: 72 KVPKLNDAYFKRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAA 120
Score = 29.1 bits (66), Expect = 6.1
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 995 EKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+KKKKKK++E E E+K+++ EE+K
Sbjct: 84 KKKKKKKKKEGEFFEEKKKKYVVSEERK 111
Score = 29.1 bits (66), Expect = 6.5
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+ KK++KKK+E E ++KKK+ EE K++++ +
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAA 120
Score = 29.1 bits (66), Expect = 6.9
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
++KKKKKK+E + EEKK++ EE K+
Sbjct: 84 KKKKKKKKKEGEFFEEKKKKYVVSEERKE 112
Score = 29.1 bits (66), Expect = 7.3
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K KK++KKK++E E ++KK++ EE+KE+++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of numerous
eukaryotic protein kinases. This domain corresponds to
the N terminal domain which binds predominantly to
protein kinases.and is found N terminal to the Hsp (Heat
shocked protein) 90-binding domain. Expression of a
construct consisting of only the N-terminal domain of
Saccharomyces pombe Cdc37 results in cellular viability.
This indicates that interactions with the cochaperone
Hsp90 may not be essential for Cdc37 function.
Length = 154
Score = 33.9 bits (78), Expect = 0.15
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E E +++ KKE + + + EE KK + K +++++E +K+ +E E+EEKK
Sbjct: 86 EMLAELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKK 140
Score = 32.0 bits (73), Expect = 0.69
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEK---KKEEEEEKKKKKK 1001
++E E+ + + EE KK K KKE+K KK +E EK++KKK
Sbjct: 96 KKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKK 141
Score = 29.7 bits (67), Expect = 4.5
Identities = 14/53 (26%), Positives = 33/53 (62%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
E +++ K+E ++ + + + KK K ++E+++ +KK +E ++EE+KK
Sbjct: 89 AELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKK 141
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 35.2 bits (81), Expect = 0.15
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ EE E + + E+ + ++ + E+ + EEEE E + +E E
Sbjct: 205 SMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESG 264
Query: 1017 EEE 1019
E E
Sbjct: 265 EME 267
Score = 34.0 bits (78), Expect = 0.30
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+ E+ +E + + E + E K++E + EEE+ ++ + EE E E
Sbjct: 207 DMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEM 266
Query: 1020 E 1020
E
Sbjct: 267 E 267
Score = 30.6 bits (69), Expect = 4.3
Identities = 11/64 (17%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE-EKEEEEKKEEEEK 1016
+ E+ + E+ KE+E+ + E + E+ + ++ E E E E ++
Sbjct: 218 SADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTP 277
Query: 1017 EEEE 1020
+ ++
Sbjct: 278 DSDD 281
Score = 29.8 bits (67), Expect = 6.8
Identities = 11/59 (18%), Positives = 26/59 (44%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E+E++ K+ E+ + EEE+ ++ EE E + + E ++ ++
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different model
[Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 35.4 bits (82), Expect = 0.15
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
E ++ + EE + + E K+ GK K ++K K EE +K+ K+ +EE E + +
Sbjct: 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALE 96
Query: 1017 EEEEKK 1022
E + K
Sbjct: 97 AELQDK 102
Score = 32.3 bits (74), Expect = 1.2
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R+ E EE + K + ++ K K + K K EE KKE +E K++ + + +
Sbjct: 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALE 96
Query: 1011 KEEEEK 1016
E ++K
Sbjct: 97 AELQDK 102
Score = 30.8 bits (70), Expect = 3.6
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 961 EEEKKKEEKKKEEEEKKK----KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
++E+KK + EE + K+ K+ K +KK + EE KK+ K+ +E+ E +
Sbjct: 36 DDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKAL 95
Query: 1017 EEEEKK 1022
E E +
Sbjct: 96 EAELQD 101
Score = 30.8 bits (70), Expect = 4.3
Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE 991
R++ + +R ++ GK + +++ K EE KKE +E K++ + K E
Sbjct: 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALE 96
Query: 992 EEEEKKKKK------------KEEEKEEEEKKEEEEKEEEEK 1021
E + K K+EE E K+ + K
Sbjct: 97 AELQDKLLSIPNIPHESVPVGKDEEDNLEVKRWGTPPVFDFK 138
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 35.9 bits (83), Expect = 0.15
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK----KEEEKE 1006
+GK EE E+ EE+ + K G +K +++ K+ K K+EE+E
Sbjct: 840 AGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERE 895
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 35.1 bits (81), Expect = 0.15
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+ E +KE E ++ K+ + + +KKKE EE K +KK ++ +E++
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
Score = 33.6 bits (77), Expect = 0.49
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+ E+EK+ E E+ KKKE + E KKK+E EE K +K+ ++ +EK+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKE---EAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
Score = 31.3 bits (71), Expect = 2.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 980 EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ + +KE E E+ KKK+E E +++++ EE +
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKA 109
Score = 30.1 bits (68), Expect = 5.1
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
K + E++ E ++ KK+EE E ++KKE EE + +KK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 30.1 bits (68), Expect = 5.2
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+ E +K+ + E ++ +++EE + KKK+E +E + +++ ++ +EK+
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 35.4 bits (82), Expect = 0.15
Identities = 24/96 (25%), Positives = 30/96 (31%), Gaps = 27/96 (28%)
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRR-------- 925
G R R R +G +K RR R SR R R
Sbjct: 320 GGARARARSAGGAGAAQKGN--------------RRGRPLGSRPGEPRGGARLDLIETLR 365
Query: 926 -----RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
+ RRR+ RR R R RR ++RS
Sbjct: 366 AAAPWQPLRRRQAGTARRLLVRPDDFRIRRFKQRSE 401
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This family
contains several uncharacterized proteins found in
Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 34.4 bits (79), Expect = 0.16
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
+ + ++ R G E+E EK+ ++ + E + + K + + + K+KK+ E
Sbjct: 102 KDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELER----KILELQRQAALLKEKKEAE 157
Query: 1004 EKEEEEKKEEEEKEEEE 1020
+KE K E K ++E
Sbjct: 158 DKEIARLKSEASKIKQE 174
Score = 33.2 bits (76), Expect = 0.45
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
KK EE+K E+E +KE ++ + + E E K + + + +EKKE E+KE K
Sbjct: 107 KKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEAEDKEIARLK 165
Score = 31.3 bits (71), Expect = 1.8
Identities = 16/59 (27%), Positives = 33/59 (55%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
K + KK EE + +KE K+ +++ + E + ++K E + + +E+KE E+K+
Sbjct: 102 KDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEAEDKE 160
Score = 30.9 bits (70), Expect = 2.4
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
EE+K EK+ E+E ++E ++ E +++ E +++ +EK+E E KE + E
Sbjct: 110 EERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEAEDKEIARLKSEAS 169
Query: 1022 K 1022
K
Sbjct: 170 K 170
Score = 29.3 bits (66), Expect = 7.1
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K+++ K+ EE K +K+ EKE ++ + E E E+K ++R+
Sbjct: 102 KDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQ 146
Score = 29.0 bits (65), Expect = 8.6
Identities = 15/89 (16%), Positives = 38/89 (42%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
+ + ++ R+ + + ++E + E + E+K E +++ K KKE + KE
Sbjct: 102 KDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEAEDKEI 161
Query: 993 EEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
K + K +++ + + E +
Sbjct: 162 ARLKSEASKIKQELVDAELEFQTTAAAPW 190
>gnl|CDD|220624 pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA-interacting
nuclear protein NIP30. This is a the N-terminal 100
amino acids of a family of proteins conserved from plants
to humans. The full-length protein has putatively been
called NEFA-interacting nuclear protein NIP30, however no
reference could be found to confirm this.
Length = 99
Score = 32.7 bits (75), Expect = 0.16
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 938 RRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE----GKTKKEEKKKEEE 993
R+RR+ R R ++ EEE + + E+ +E ++KK++E K K + + +E+
Sbjct: 9 EARKRRQEEVRAPRDPKAEPEEEYDGRSLYERLQENKDKKQEEFEEKFKLKNQFRGLDED 68
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E + + EE + EKK + E+ EE
Sbjct: 69 EVEFLDEVEESRRAAEKKRKREEAEE 94
Score = 32.7 bits (75), Expect = 0.17
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK------EE 1003
R+R +E K E ++E + + E + ++KK+EE EEK K K E+
Sbjct: 9 EARKRRQEEVRAPRDPKAEPEEEYDGRSLYERLQENKDKKQEEFEEKFKLKNQFRGLDED 68
Query: 1004 EKEEEEKKEEEEKEEEEKKRRRIRRK 1029
E E ++ EE + E+K++R +
Sbjct: 69 EVEFLDEVEESRRAAEKKRKREEAEE 94
>gnl|CDD|215195 PLN02341, PLN02341, pfkB-type carbohydrate kinase family protein.
Length = 470
Score = 35.6 bits (82), Expect = 0.16
Identities = 15/56 (26%), Positives = 16/56 (28%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
S RR R R R R R R R RRR G +E
Sbjct: 17 PGLSSPPSPHGHLVPRRVCSRCRASARASSRARAGARSRARRRLGDTEVGSAAGKE 72
Score = 33.3 bits (76), Expect = 0.78
Identities = 16/56 (28%), Positives = 17/56 (30%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
S RR R R R R R R R RRR +GKE
Sbjct: 17 PGLSSPPSPHGHLVPRRVCSRCRASARASSRARAGARSRARRRLGDTEVGSAAGKE 72
Score = 32.1 bits (73), Expect = 1.5
Identities = 14/56 (25%), Positives = 15/56 (26%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
S RR R R R R R R R RRR +E
Sbjct: 17 PGLSSPPSPHGHLVPRRVCSRCRASARASSRARAGARSRARRRLGDTEVGSAAGKE 72
Score = 31.3 bits (71), Expect = 2.9
Identities = 13/54 (24%), Positives = 14/54 (25%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
G RR R R R R R R R RRR +
Sbjct: 18 GLSSPPSPHGHLVPRRVCSRCRASARASSRARAGARSRARRRLGDTEVGSAAGK 71
Score = 30.6 bits (69), Expect = 4.4
Identities = 11/59 (18%), Positives = 12/59 (20%)
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R R R R R R R R RRR +
Sbjct: 13 FSPHPGLSSPPSPHGHLVPRRVCSRCRASARASSRARAGARSRARRRLGDTEVGSAAGK 71
Score = 30.2 bits (68), Expect = 7.4
Identities = 12/54 (22%), Positives = 12/54 (22%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
RR R R R R R R R RRR
Sbjct: 17 PGLSSPPSPHGHLVPRRVCSRCRASARASSRARAGARSRARRRLGDTEVGSAAG 70
>gnl|CDD|214880 smart00880, CHAD, The CHAD domain is an alpha-helical domain
functionally associated with some members of the
adenylate cyclase family. It has conserved histidines
that may chelate metals.
Length = 262
Score = 35.1 bits (81), Expect = 0.16
Identities = 12/85 (14%), Positives = 19/85 (22%), Gaps = 19/85 (22%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR-------------------R 938
+ RR + RR R R
Sbjct: 93 DALVAALEARRAAARRALLAALDSARYTALLLDLSRWLATPPWQPAADDKAARPLADFAA 152
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEE 963
+ RR R+ RR + ++E
Sbjct: 153 KALRRLLRKLRRAFPAARALLDDEA 177
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 33.0 bits (76), Expect = 0.16
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+E+K+EEK + EEE K+ K K++E EE+ +K KK + EE+ + +
Sbjct: 1 KERKEEEKAQREEELKR-----LKNLKREEIEEKLEKIKKVAGLRGADLSEEDLADGD 53
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 34.6 bits (80), Expect = 0.16
Identities = 18/71 (25%), Positives = 37/71 (52%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EE EK ++E + +E ++ E + E + EEE + +++ +E + E+ +E+ E
Sbjct: 116 MEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPE 175
Query: 1019 EEKKRRRIRRK 1029
+ RIR+
Sbjct: 176 LLSEYERIRKN 186
Score = 32.3 bits (74), Expect = 1.0
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 950 RRRRRSGKEEEEEEKKKEE-----KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
R R + + +K K E K E E + ++ + + + + E +E +++ K+ EE
Sbjct: 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80
Query: 1005 KEEEEKKEEE----EKEEEEKKRRR 1025
K K E E E + K R
Sbjct: 81 KLSAVKDERELRALNIEIQIAKERI 105
Score = 30.0 bits (68), Expect = 6.0
Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 17/119 (14%)
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE-----------EKKKEEEEK 976
R R + R+ ++ + + E E E+ + + ++ + E+
Sbjct: 21 RLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80
Query: 977 KKKEGKTKKE------EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K K ++E E + +E + + E EE +K E+E E+ +++ R+ +
Sbjct: 81 KLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139
Score = 29.3 bits (66), Expect = 8.7
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 943 RRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
R R +R + + K+E E E + +E E E + EE EK +K+ E
Sbjct: 72 RERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLE----DELAELMEEIEKLEKEIE 127
Query: 1003 EEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ KE E+ E+ E E + + R
Sbjct: 128 DLKERLERLEKNLAEAEARLEEEVAEIR 155
>gnl|CDD|236485 PRK09368, PRK09368, gas vesicle synthesis-like protein; Reviewed.
Length = 140
Score = 33.5 bits (77), Expect = 0.17
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 872 GGGRRRRRRRRSGKEE--EEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRR 920
G R + + +G E E + G RR++R R R+ RRRR
Sbjct: 90 SGARGKSKGALTGAAETASEALGQGRGSDEEEERRRERPRPRKAPRRRRRE 140
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to nutrients.
TIP41 (pfam04176) interacts with TAP42 and negatively
regulates the TOR signaling pathway.
Length = 335
Score = 35.0 bits (81), Expect = 0.17
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 993 EEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+ + EE+E++E EE++ EE K R
Sbjct: 295 QGGGEAAASAEEEEDDEDDEEDDDEETLKARA 326
>gnl|CDD|223019 PHA03237, PHA03237, envelope glycoprotein M; Provisional.
Length = 424
Score = 35.1 bits (81), Expect = 0.18
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
RRR R R + +++ +R R R RRR +S E+E E+ + ++EE
Sbjct: 355 RRRSTRFYGRVKTVQQKVKRYLNRVRGGRRRPKSLVEDERGLLLTEDSETDDEE 408
Score = 35.1 bits (81), Expect = 0.20
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 912 RRRSRR---RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
RRRS R R + +++ +R R R RRR + R + ++EE
Sbjct: 355 RRRSTRFYGRVKTVQQKVKRYLNRVRGGRRRPKSLVEDERGLLLTEDSETDDEE 408
Score = 34.3 bits (79), Expect = 0.35
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
RRRS R R + +++ +R R R RRR + R
Sbjct: 355 RRRSTRFYGRVKTVQQKVKRYLNRVRGGRRRPKSLVEDER 394
Score = 33.2 bits (76), Expect = 0.78
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
RRR R R + +++ +R R R RRR + R
Sbjct: 355 RRRSTRFYGRVKTVQQKVKRYLNRVRGGRRRPKSLVEDER 394
Score = 31.3 bits (71), Expect = 3.0
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 918 RRRRRR---RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE 968
RRR R R + +++ +R R R RRR + R E+ E EE
Sbjct: 355 RRRSTRFYGRVKTVQQKVKRYLNRVRGGRRRPKSLVEDERGLLLTEDSETDDEE 408
Score = 30.9 bits (70), Expect = 3.9
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
RR+ R R ++ +++ +R R R RRR + R
Sbjct: 355 RRRSTRFYGRVKTVQQKVKRYLNRVRGGRRRPKSLVEDER 394
Score = 30.9 bits (70), Expect = 4.0
Identities = 12/40 (30%), Positives = 16/40 (40%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
RRR R R ++ +R R R RRR + R
Sbjct: 355 RRRSTRFYGRVKTVQQKVKRYLNRVRGGRRRPKSLVEDER 394
>gnl|CDD|135428 PRK05529, PRK05529, cell division protein FtsQ; Provisional.
Length = 255
Score = 34.9 bits (80), Expect = 0.18
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
+ R R+ R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRFIL 37
Score = 34.5 bits (79), Expect = 0.21
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
+ + R R+ R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 33.7 bits (77), Expect = 0.37
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
+ R R+ R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 33.7 bits (77), Expect = 0.38
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
+ R R+ R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 33.7 bits (77), Expect = 0.40
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
+ R R+ R+ R RR R RRR
Sbjct: 3 VNDEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 33.7 bits (77), Expect = 0.42
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
+ R R+ R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 33.7 bits (77), Expect = 0.42
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
+ R R+ R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 33.7 bits (77), Expect = 0.42
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
+ R R+ R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 33.7 bits (77), Expect = 0.42
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
+ R R+ R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 33.7 bits (77), Expect = 0.42
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
+ R R+ R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 33.7 bits (77), Expect = 0.42
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
+ R R+ R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 32.6 bits (74), Expect = 0.81
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRR 931
+ R +R+ R R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 32.2 bits (73), Expect = 1.2
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
+ + R R R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 31.8 bits (72), Expect = 1.6
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
+ + R+ R+ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 30.7 bits (69), Expect = 3.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 893 KEGGGGRRRRRRKKRRRSRRRRSRRRRRRRR 923
E R R++++ R RR R RRR
Sbjct: 5 DEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 30.3 bits (68), Expect = 4.9
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRR 926
+ R ++ R R RR R RRR
Sbjct: 8 YQNLRYARKERKDYERVRRFTTRIRRRF 35
Score = 30.3 bits (68), Expect = 5.4
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
+ + R R+ R RR R RRR
Sbjct: 3 VNDEAYQNLRYARKERKDYERVRRFTTRIRRRF 35
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo kinase
and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 33.5 bits (77), Expect = 0.18
Identities = 24/82 (29%), Positives = 51/82 (62%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
R+++R + +R+ + RR K E+K + + KE + +KKE K + E+ + +E+
Sbjct: 33 RQQKRTIEKLEQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQEQ 92
Query: 995 EKKKKKKEEEKEEEEKKEEEEK 1016
EKK+ K E+E++E++ +++E +
Sbjct: 93 EKKRMKAEKEEQEQKHQKQERE 114
Score = 33.1 bits (76), Expect = 0.31
Identities = 24/94 (25%), Positives = 56/94 (59%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
+R+ + RR +R R ++ R + + + K+E ++E +K + +E+E+K+ K K +
Sbjct: 44 QRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRFQEQEKKRMKAEKEE 103
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+E+K +++E E K++E +E ++ + E++ E
Sbjct: 104 QEQKHQKQEREFLAKQEENLEEALQQLQNEKRHE 137
Score = 30.4 bits (69), Expect = 2.5
Identities = 33/107 (30%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
R+++R + +R+ + RR +R R ++ R + KE + EKK E K+E E+ + +
Sbjct: 33 RQQKRTIEKLEQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKK--ELKQEVEKLPRFQ 90
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEE---KEEEEKKEEEEKEEEEKKRR 1024
+ KK K ++EE+E+K +K+E E K+EE +E ++ + EK+
Sbjct: 91 EQEKKRMKAEKEEQEQKHQKQEREFLAKQEENLEEALQQLQNEKRHE 137
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 35.7 bits (82), Expect = 0.18
Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+E+ ++ E++EK ++G +E ++ EE + K +EE E+ E E++ +
Sbjct: 4044 DEDIQQDDFSDLAEDDEKMNEDGF--EENVQENEESTEDGVKSDEELEQGEVPEDQAIDN 4101
Query: 1019 EEK 1021
K
Sbjct: 4102 HPK 4104
Score = 34.2 bits (78), Expect = 0.48
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 21/86 (24%)
Query: 956 GKEEEEEEKKKEEKKKEEE---------------------EKKKKEGKTKKEEKKKEEEE 994
E E + ++E + +EE E+ E + K E+ E
Sbjct: 3873 VSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNE 3932
Query: 995 EKKKKKKEEEKEEEEKKEEEEKEEEE 1020
K+++ K E+K +E+++EEE
Sbjct: 3933 SDLVSKEDDNKALEDKDRQEKEDEEE 3958
Score = 33.4 bits (76), Expect = 0.77
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+E +EE E+ + ++E +E T E+ ++++ +++EK E+ EE +E
Sbjct: 4017 DENKEEADAEKDEPMQDEDPLEENNTLDED---IQQDDFSDLAEDDEKMNEDGFEENVQE 4073
Query: 1018 EEEK 1021
EE
Sbjct: 4074 NEES 4077
Score = 33.4 bits (76), Expect = 0.86
Identities = 13/63 (20%), Positives = 35/63 (55%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
EE+ + E+K E+ + KE+ K E++ +++K++EE+ ++ ++E + +
Sbjct: 3913 EEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPD 3972
Query: 1020 EKK 1022
++
Sbjct: 3973 IQE 3975
Score = 32.7 bits (74), Expect = 1.3
Identities = 13/61 (21%), Positives = 33/61 (54%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
++E+ +E +E+ ++ ++++K E+ ++ ++ EE E+ K +EE E+
Sbjct: 4032 QDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQG 4091
Query: 1020 E 1020
E
Sbjct: 4092 E 4092
Score = 32.7 bits (74), Expect = 1.6
Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKK--KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
++ EE E E+K ++ E KE++ + + K +EKE+EE+ ++ ++E
Sbjct: 3909 DEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDE 3968
Query: 1021 KK 1022
+
Sbjct: 3969 IQ 3970
Score = 32.3 bits (73), Expect = 1.8
Identities = 14/68 (20%), Positives = 34/68 (50%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
++E+ ++ E+ ++ + +EK E+ E+ ++ EE E+ K +EE ++
Sbjct: 4032 QDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQG 4091
Query: 1019 EEKKRRRI 1026
E + + I
Sbjct: 4092 EVPEDQAI 4099
Score = 32.3 bits (73), Expect = 2.0
Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE-----EEEEKKKKKKEEEK--EEE 1008
E +EE ++++ ++E+ ++ ++ ++ + E++EK + EE E E
Sbjct: 4016 ADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENE 4075
Query: 1009 EKKEEEEKEEEEKKR 1023
E E+ K +EE ++
Sbjct: 4076 ESTEDGVKSDEELEQ 4090
Score = 31.9 bits (72), Expect = 2.2
Identities = 15/66 (22%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGK--TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E EE+ + E+K E+ E +K+++ K E++++++K+ EEE ++ ++E
Sbjct: 3910 EPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEI 3969
Query: 1016 KEEEEK 1021
+ + ++
Sbjct: 3970 QPDIQE 3975
Score = 31.9 bits (72), Expect = 2.5
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+E+ E EE +E EE + K+ EE ++ E E + + + + E +
Sbjct: 4059 DEKMNEDGFEENVQENEESTEDGVKS-DEELEQGEVPEDQAIDNHPKMDAKSTFASAEAD 4117
Query: 1018 EE 1019
EE
Sbjct: 4118 EE 4119
Score = 31.1 bits (70), Expect = 4.2
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 961 EEEKKKEEKKKEEEEKKK--KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E E+K E+ E KE K E K +E+E +++ ++ ++E + + ++
Sbjct: 3918 ETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENN 3977
Query: 1019 EE 1020
+
Sbjct: 3978 SQ 3979
Score = 30.0 bits (67), Expect = 9.6
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGK------------TKKEEKKKEEEEEKKKKK 1000
S + EEE+EK E ++E+ K K T+ E ++++ E E
Sbjct: 2924 NVSEQIEEEDEKDDEYGEQEKVSDKNDYLKDFIDYDDDGSISTESEPEEEKRECESGFDG 2983
Query: 1001 KEEEKEEEEKKEEEEKEEEEK 1021
+ +EEE+ E+ EKE E +
Sbjct: 2984 WNDYEEEEDDDEKNEKECELE 3004
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region [General
function prediction only].
Length = 303
Score = 35.0 bits (80), Expect = 0.18
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
R +R+ + R +EEEE + + E + E++ KTKK++ +K ++ + E E
Sbjct: 193 REKRQDEKERYVEEEEESDTELEAVTDDSEKE-----KTKKKDLEKWLGSDQSMETSESE 247
Query: 1005 KEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+EE + E +E E+E+ K + +RK
Sbjct: 248 EEESSESESDEDEDEDNKGKIRKRKT 273
Score = 30.4 bits (68), Expect = 5.0
Identities = 13/66 (19%), Positives = 32/66 (48%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
E E +++E + E +E + ++ K K ++K ++ ++ +K E E+E + E+
Sbjct: 238 DQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKPHIHIEYEQERENEKI 297
Query: 1015 EKEEEE 1020
+
Sbjct: 298 PAVQHS 303
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA binding
fragment. Topoisomerase I promotes the relaxation of DNA
superhelical tension by introducing a transient
single-stranded break in duplex DNA and are vital for the
processes of replication, transcription, and
recombination. This family may be more than one
structural domain.
Length = 215
Score = 34.5 bits (80), Expect = 0.18
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+ +KE+KK +EEKK K+E++K EE
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 33.7 bits (78), Expect = 0.32
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 966 KEEKKKEEEEKKKKEGK---TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
++ KKE K K T E + E+E+KK KEE+K +E+K++ E+
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 32.2 bits (74), Expect = 0.92
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 13/55 (23%)
Query: 977 KKKEGKTKKEEKK---------KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
KK+ G K+ +K E E+EKKK +EEK K +EEK++ E+
Sbjct: 73 KKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEK----KAIKEEKDKLEEP 123
Score = 31.8 bits (73), Expect = 1.4
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
E +KE+KK +E+KK KEEK K EE
Sbjct: 96 EAEKEKKKAMSKEEKKAI----KEEKDKLEEP 123
Score = 31.8 bits (73), Expect = 1.5
Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 958 EEEEEEKK---KEEKKKEEEEKKKKEGK 982
E E+E+KK KEEKK +EEK K E
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 35.3 bits (81), Expect = 0.19
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 7/130 (5%)
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
KE + + K +++ K+ +S +R + R ++ ++R++
Sbjct: 455 KENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEETAA 514
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
R + R EE E K+ K+ E E KK E K K+EE +K+ +E
Sbjct: 515 RAAAQAAASR----EECAESLKQAKQDLEMEIKKLEHDLK---LKEEECRMLEKEAQELR 567
Query: 1005 KEEEEKKEEE 1014
K +E +KE E
Sbjct: 568 KYQESEKETE 577
Score = 34.9 bits (80), Expect = 0.27
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
+R + R + +++ EEKK+ KKEEEE + + ++E E K+ K++
Sbjct: 483 KRLKSEADSRVNAEKQLAEEKKR---KKEEEETAAR-AAAQAAASREECAESLKQAKQDL 538
Query: 1004 EKE-----EEEKKEEEEKEEEEKKRRRIRRKR 1030
E E + K +EEE EK+ + +R+ +
Sbjct: 539 EMEIKKLEHDLKLKEEECRMLEKEAQELRKYQ 570
Score = 31.0 bits (70), Expect = 3.6
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
+R + R ++ ++R+ KEEEE + + E+ + K K++ +
Sbjct: 483 KRLKSEADSRVNAEKQLAEEKKRK--KEEEETAARAAAQAAASREECAESLKQAKQDLEM 540
Query: 991 E-EEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E ++ E K KEEE EK+ +E ++ +E
Sbjct: 541 EIKKLEHDLKLKEEECRMLEKEAQELRKYQE 571
>gnl|CDD|225581 COG3039, COG3039, Transposase and inactivated derivatives, IS5
family [DNA replication, recombination, and repair].
Length = 230
Score = 34.5 bits (79), Expect = 0.19
Identities = 22/91 (24%), Positives = 28/91 (30%)
Query: 857 EEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSR 916
+ G +EE G R R + E G RR R +R R R R
Sbjct: 123 KLLLGSVREERLYADKGYRGDETREELREHEPRDSIMLRAGRRRMLRLLQRARGLRISRR 182
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R R R + R R R R +
Sbjct: 183 RMGGETRARVEQFGLRARYRTLVRNGVQLHN 213
Score = 34.1 bits (78), Expect = 0.30
Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 888 EEKKKKEGGGGRRRRRRKKRR-RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
K G R R + R R RRR R +R R R RRR R R +
Sbjct: 135 YADKGYRGDETREELREHEPRDSIMLRAGRRRMLRLLQRARGLRISRRRMGGETRARVEQ 194
Query: 947 RRRRRRRR 954
R R R
Sbjct: 195 FGLRARYR 202
Score = 31.8 bits (72), Expect = 1.3
Identities = 17/64 (26%), Positives = 22/64 (34%)
Query: 894 EGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
G R ++ R R R RRR R +R R R RRR R R +
Sbjct: 135 YADKGYRGDETREELREHEPRDSIMLRAGRRRMLRLLQRARGLRISRRRMGGETRARVEQ 194
Query: 954 RSGK 957
+
Sbjct: 195 FGLR 198
Score = 31.4 bits (71), Expect = 1.9
Identities = 18/61 (29%), Positives = 19/61 (31%)
Query: 893 KEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
G R K R R R R R RRR R +R R R RRR
Sbjct: 125 LLGSVREERLYADKGYRGDETREELREHEPRDSIMLRAGRRRMLRLLQRARGLRISRRRM 184
Query: 953 R 953
Sbjct: 185 G 185
Score = 30.2 bits (68), Expect = 4.9
Identities = 16/59 (27%), Positives = 20/59 (33%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
+ R R R R R RRR R +R R R RRR + E+
Sbjct: 136 ADKGYRGDETREELREHEPRDSIMLRAGRRRMLRLLQRARGLRISRRRMGGETRARVEQ 194
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1 is
an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 34.4 bits (79), Expect = 0.19
Identities = 19/65 (29%), Positives = 42/65 (64%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+ E+K ++ EK+ K+ + + + E+EE ++ +EE++ +EEK+ +KEE+E+K +
Sbjct: 65 ETEEKVDQYEKENKDSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAK 124
Query: 1026 IRRKR 1030
+ K+
Sbjct: 125 EKDKQ 129
Score = 34.4 bits (79), Expect = 0.21
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
R +RR R + ++ EEEK+ +E+K+ +K+++E K KE+ K+E +E +
Sbjct: 83 RNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQEIIDELETSNLPA 142
Query: 1004 EKE-EEEKKEEEEKEEEEKKRRRIRR 1028
+ KK+ ++ E + +K R +R
Sbjct: 143 NVIIAQHKKQSKQLESQVEKLERKKR 168
Score = 32.0 bits (73), Expect = 1.0
Identities = 20/68 (29%), Positives = 45/68 (66%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EE EEK + +K+ ++ + + + +E+++ E+ E++K+ KEE++ +K+E+E+K
Sbjct: 64 EETEEKVDQYEKENKDSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMA 123
Query: 1019 EEKKRRRI 1026
+EK ++ I
Sbjct: 124 KEKDKQEI 131
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific eukaryotic
initiation factor 4B proteins.
Length = 496
Score = 35.1 bits (80), Expect = 0.19
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK--KEEEEEKKKKKKEEEKEEEEKKEEE 1014
+E EEK K+ +K + E + ++ + + EE+K KEE + K+EE E K
Sbjct: 338 REVVLEEKGKDWRKIDLELEHRRVDRPETEEEKNLKEEINLLRVDLKKEEAIAPESKGSG 397
Query: 1015 EKEEEEKKRRRIRRK 1029
+++ + IR+K
Sbjct: 398 QEQSHKGLSELIRQK 412
>gnl|CDD|216581 pfam01577, Peptidase_S30, Potyvirus P1 protease. The potyviridae
family positive stand RNA viruses with genome encoding a
polyprotein. members include zucchini yellow mosaic
virus, and turnip mosaic viruses which cause considerable
losses of crops worldwide. This family consists of a C
terminus region from various plant potyvirus P1 proteins
(found at the N terminus of the polyprotein). The C
terminus of P1 is a serine-type protease responsible for
autocatalytic cleavage between P1 and the helper
component protease pfam00851. The entire P1 protein may
be involved in virus-host interactions.
Length = 245
Score = 34.6 bits (80), Expect = 0.20
Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
+ R R+ S+ ++ ++ R R+ + ++R + +R R R+ G
Sbjct: 6 KVAERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREKLKREER-EERQFLQGAYASIVS 64
Query: 964 K---KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
K +K + E + K+ KK KKKKKK++
Sbjct: 65 KITPIGTDKVSKTESVSFRTPYYKRTTKK-----MKKKKKKKK 102
Score = 29.2 bits (66), Expect = 8.8
Identities = 18/101 (17%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK-KEEK 988
R R+ + ++ ++ R R+ S + ++ +K K++E EE++ +G K
Sbjct: 8 AERLLRKEMSKIKQEKKGRIILRKLSPAQVAKKREK--LKREEREERQFLQGAYASIVSK 65
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
+K K + K +K +++KK++++
Sbjct: 66 ITPIGTDKVSKTESVSFRTPYYKRTTKKMKKKKKKKKVVMS 106
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 35.2 bits (81), Expect = 0.20
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK 989
R+R+RRR E + E+ E+E +KE K ++EE K
Sbjct: 356 RKRKRRRVPPLPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
Score = 32.9 bits (75), Expect = 0.89
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
R+R+RRR +E+E++ ++E E+E K+++E
Sbjct: 356 RKRKRRRVPPLPEYSSDEDEDDSDEDEVDYEKERKRRRE 394
Score = 30.2 bits (68), Expect = 6.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R+R+RRR +E+E + +KE K++ EE+K
Sbjct: 356 RKRKRRRVPPLPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels of
palindromic sequences in DNA. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1042
Score = 35.3 bits (81), Expect = 0.20
Identities = 28/242 (11%), Positives = 70/242 (28%), Gaps = 24/242 (9%)
Query: 806 CITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKE 865
C Q + + K+ E++ + + R K + + +EE
Sbjct: 449 CTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCG 508
Query: 866 EE--------EGGGGGGRRRR-----RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRR 912
+ G RR + + EE + R++R K +
Sbjct: 509 SCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEI 568
Query: 913 RRSRRRRRRRRRRRR----------RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
++S + R + R + + + R+ E++ +
Sbjct: 569 QQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQ 628
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEK-KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
+ + ++ +E K + +E E + KE ++ ++ + +
Sbjct: 629 DVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSE 688
Query: 1022 KR 1023
K
Sbjct: 689 KE 690
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 34.2 bits (79), Expect = 0.20
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKK 985
EE E K++E E +KKE K KK
Sbjct: 170 AEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 33.8 bits (78), Expect = 0.25
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
E ++ K EE EE E K+EE + E++E KKKK
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAA---KEEESAEGEKKESKKKK 196
Score = 33.5 bits (77), Expect = 0.37
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
K E+ EE E KEEE E EKKE ++K+
Sbjct: 163 KLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 31.9 bits (73), Expect = 0.98
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 957 KEEEEEEK--KKEEKKKEEEEKKKKEGKTKKEEKKKE 991
K+ + E+ +E + ++++ KKE KKK+
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 31.1 bits (71), Expect = 1.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
K+ K EE ++ E +E++ E E+K+ KKK+
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.2 bits (66), Expect = 7.8
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
+ EE E ++++ E +KK+ K K
Sbjct: 163 KLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 34.5 bits (79), Expect = 0.21
Identities = 18/62 (29%), Positives = 25/62 (40%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
S K ++ K K+ K + KK K E KKE +K KK+ E E +
Sbjct: 40 STKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKL 99
Query: 1015 EK 1016
K
Sbjct: 100 FK 101
Score = 34.5 bits (79), Expect = 0.22
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE------EK 1010
K+ EE+K +K +E K + K K ++ K KK K + + EK
Sbjct: 10 KKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEK 69
Query: 1011 KEEEEKEEEEKKRRRI 1026
E +KE KK +
Sbjct: 70 TESVKKESVAKKTVKK 85
Score = 32.6 bits (74), Expect = 0.90
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK-KKEEEKEEEEKKEEEEKEEEEKK 1022
K K ++ K KK K KK + EK + KKE ++ KKE E E
Sbjct: 37 KTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEAS 96
Score = 30.7 bits (69), Expect = 4.4
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK-KEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+++ +E + KK K + KK K K K ++ K +K E K+E K
Sbjct: 21 KKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAK 80
Query: 1012 EEEEKEEEEKK 1022
+ +KE +
Sbjct: 81 KTVKKEAVSAE 91
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion
protein; Provisional.
Length = 196
Score = 34.1 bits (78), Expect = 0.21
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
KEE + K K +E K K K K E ++ E EK+E
Sbjct: 146 KEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
Score = 31.8 bits (72), Expect = 1.2
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
K KEE K K K K+ K E E K K K E +++E EK+E
Sbjct: 144 KAKEEAK--AAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
>gnl|CDD|201707 pfam01280, Ribosomal_L19e, Ribosomal protein L19e.
Length = 148
Score = 33.7 bits (78), Expect = 0.21
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
K KK GR R+R++KRR+ R R R+ + R ++ RR R RR R R
Sbjct: 52 KPKKGHSRGRARKRKEKRRKGRHRGPGSRKGTKGARMPKKELWIRRIRALRRLLRELR 109
Score = 29.4 bits (67), Expect = 5.1
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
KK K+G R R+RK++RR R R R+ + R ++ RR R RR R R
Sbjct: 51 KKPKKGHSRGRARKRKEKRRKGRHRGPGSRKGTKGARMPKKELWIRRIRALRRLLRELR 109
Score = 28.7 bits (65), Expect = 9.5
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
R R+R+R+ +RR+ R R R+ + R ++ RR R RR R ++ + +K
Sbjct: 59 RGRARKRKEKRRKGRHRGPGSRKGTKGARMPKKELWIRRIRALRRLLRELRDAGKIDKH 117
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 33.2 bits (76), Expect = 0.21
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
RR+R R R+ KE E+E + +K+K KK + EE +K EEEEK++++
Sbjct: 59 ERRKREREIAEERKLQKEREKEGDEFADKEKFVTSAYKK----QLEENRKLEEEEKEREE 114
Query: 1001 KEEEKEEEEKK 1011
EEE + + K
Sbjct: 115 LEEENDVTKGK 125
Score = 31.2 bits (71), Expect = 1.1
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE---EEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E++K E++ EE K +KE + + +E +E+ KK+ +E K EEE+KE EE EEE
Sbjct: 59 ERRKREREIAEERKLQKEREKEGDEFADKEKFVTSAYKKQLEENRKLEEEEKEREELEEE 118
Query: 1020 EKKRRR 1025
+
Sbjct: 119 NDVTKG 124
Score = 28.5 bits (64), Expect = 8.8
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 21/94 (22%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE--EKKKKKKEEEKE-------- 1006
+EE+++ K ++KE + K + E++K E E E++K +KE EKE
Sbjct: 29 AAKEEKKQAKLSERKENRKPKYIGSLLEAAERRKREREIAEERKLQKEREKEGDEFADKE 88
Query: 1007 -----------EEEKKEEEEKEEEEKKRRRIRRK 1029
EE +K EEE++E E+
Sbjct: 89 KFVTSAYKKQLEENRKLEEEEKEREELEEENDVT 122
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 34.9 bits (81), Expect = 0.22
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
EE ++ + E + + K E K + EK+K+ E++ E + K E ++
Sbjct: 1 EELDALDEILGDLESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDR 60
Query: 1022 KRRRIRRKR 1030
R I R +
Sbjct: 61 LREEIERLK 69
Score = 31.5 bits (72), Expect = 2.2
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+E E + +E K ++ K K EK E+ ++++ E + K+E +
Sbjct: 5 ALDEILGDLESYEPQEYLNKLEDTKLKLLEK--EKRLLLLEEQRLEAEGLRLKREVDRLR 62
Query: 1018 EEEKK 1022
EE ++
Sbjct: 63 EEIER 67
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein)
[Intracellular trafficking and secretion].
Length = 211
Score = 34.2 bits (78), Expect = 0.22
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 28/97 (28%)
Query: 961 EEEKKKEEKKKEEEEKKKKE--------------GKTKKEEKKKEEE--EEKKKKKKEEE 1004
E+KK++ K E+EE ++KE GK EEKK ++ E + +E
Sbjct: 2 SVERKKKQAKIEKEENEQKERSLDVVSKGDAFGDGKAGGEEKKVQQSPFLENAVPEGDEG 61
Query: 1005 KEEE------------EKKEEEEKEEEEKKRRRIRRK 1029
K E ++ + EE+E + R K
Sbjct: 62 KGPESPNIHFEPVVELQRVHLKTNEEDETVLFKARAK 98
Score = 32.3 bits (73), Expect = 0.88
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
GK EE+K ++ E + EGK + E + ++ + EE+E
Sbjct: 36 GKAGGEEKKVQQSPFLENAVPEGDEGKGPESPNIHFEPVVELQRVHLKTNEEDE 89
>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional.
Length = 444
Score = 34.8 bits (80), Expect = 0.23
Identities = 21/80 (26%), Positives = 28/80 (35%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
R R + R RR RRR R S + + ++K + KK+
Sbjct: 20 SRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQASQAPAAVQEKGVKTKKECY 79
Query: 981 GKTKKEEKKKEEEEEKKKKK 1000
G K EEE K KK
Sbjct: 80 GVFCLTYDLKAEEETKSWKK 99
Score = 33.7 bits (77), Expect = 0.56
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE-- 967
SR R S+ R RR RRR R + + + +E+ + KKE
Sbjct: 20 SRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQASQAPAAVQEKGVKTKKECY 79
Query: 968 -------EKKKEEEEKKKK 979
+ K EEE K K
Sbjct: 80 GVFCLTYDLKAEEETKSWK 98
Score = 31.7 bits (72), Expect = 1.9
Identities = 15/61 (24%), Positives = 21/61 (34%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
S R RS + R RR RRR R + + +E+ K K+
Sbjct: 17 NTSSRLRSSQLGLSRTHLSNHFRRALLPRRRATNARISCSVNQASQAPAAVQEKGVKTKK 76
Query: 968 E 968
E
Sbjct: 77 E 77
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 34.9 bits (80), Expect = 0.23
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 954 RSGKEEEEEEKKKEEKKKEEE--EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
S E EE+ EE + E E + +++ ++ E ++E+ KK E+EEE+ +
Sbjct: 211 ESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGE 270
Query: 1012 EEEE---------KEEEEK 1021
E K EEE+
Sbjct: 271 RPENATYLTKLFRKAEEEQ 289
Score = 31.4 bits (71), Expect = 2.5
Identities = 16/66 (24%), Positives = 35/66 (53%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E + + + E EEE ++ E +T+ E + +E+ +++ + ++E ++ +EE
Sbjct: 206 EPFQLESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEE 265
Query: 1019 EEKKRR 1024
EEK R
Sbjct: 266 EEKGER 271
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 35.2 bits (82), Expect = 0.23
Identities = 15/68 (22%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKE--EKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+E +++E ++EE+ + ++ E + ++ EK K ++ KK +K +EK+ E + +
Sbjct: 190 EELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQH 249
Query: 1015 EKEEEEKK 1022
+K + ++
Sbjct: 250 KKYAKLRE 257
>gnl|CDD|146151 pfam03363, Herpes_LP, Herpesvirus leader protein.
Length = 177
Score = 33.7 bits (77), Expect = 0.23
Identities = 20/64 (31%), Positives = 25/64 (39%)
Query: 869 GGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
GG G RR RRR +EEEE G + + R R +R R +
Sbjct: 105 GGDPEGPRRVRRRVLLEEEEEVVSGSPSGPQGPLIQPAARSWREWLARSGPRPEPQPVTT 164
Query: 929 RRRR 932
RRR
Sbjct: 165 FRRR 168
Score = 30.7 bits (69), Expect = 2.9
Identities = 20/64 (31%), Positives = 24/64 (37%)
Query: 870 GGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
GG RR RRR EEEE+ G + + RS R R R +
Sbjct: 105 GGDPEGPRRVRRRVLLEEEEEVVSGSPSGPQGPLIQPAARSWREWLARSGPRPEPQPVTT 164
Query: 930 RRRR 933
RRR
Sbjct: 165 FRRR 168
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7 is
an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 33.0 bits (76), Expect = 0.23
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 29/99 (29%)
Query: 958 EEEEEEKKKEEKKKEEEE-------------KKKKEGKTKKEEKKKEEEEEKKKKKKE-- 1002
++ EEE K+E K + E + +K + K E++++ +E+KKKKKKE
Sbjct: 31 DKREEEAKEEAKARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
Query: 1003 ------------EEKEEEEKKEEEEKE--EEEKKRRRIR 1027
EE E KK EE+K+ E+ K R+ +
Sbjct: 91 NFYRFQIREKKKEELAELRKKFEEDKKRIEQLKAARKFK 129
Score = 32.2 bits (74), Expect = 0.41
Identities = 27/95 (28%), Positives = 52/95 (54%), Gaps = 21/95 (22%)
Query: 957 KEEEEEEKKKEEKKKEEEE---------KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
K EEE +++ + + + +E+ +K+K G ++ + ++ + ++KKKKK++E E
Sbjct: 32 KREEEAKEEAKARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELEN 91
Query: 1008 -------EEKKEEEE----KEEEEKKR-RRIRRKR 1030
E+KKEE K EE+KKR +++ R
Sbjct: 92 FYRFQIREKKKEELAELRKKFEEDKKRIEQLKAAR 126
>gnl|CDD|165509 PHA03250, PHA03250, UL35; Provisional.
Length = 564
Score = 34.7 bits (80), Expect = 0.24
Identities = 14/55 (25%), Positives = 16/55 (29%), Gaps = 10/55 (18%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRR----------RRRRRRRRRRRRRRRRRRRRSG 956
RR +R + R RRR RR RRR R G
Sbjct: 487 RRPARPSSKDLERPPGGRRRMASVPGFRPYSVARRGRRRPPPPAPRGPAHTSAQG 541
Score = 33.6 bits (77), Expect = 0.64
Identities = 14/48 (29%), Positives = 15/48 (31%), Gaps = 7/48 (14%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRR-------RRRRRRRRRRRRRS 955
SRR R + R RRR RR RRR R
Sbjct: 486 SRRPARPSSKDLERPPGGRRRMASVPGFRPYSVARRGRRRPPPPAPRG 533
Score = 33.2 bits (76), Expect = 0.86
Identities = 13/47 (27%), Positives = 14/47 (29%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R R + R RRR R RR RRR G
Sbjct: 488 RPARPSSKDLERPPGGRRRMASVPGFRPYSVARRGRRRPPPPAPRGP 534
Score = 33.2 bits (76), Expect = 0.89
Identities = 15/46 (32%), Positives = 16/46 (34%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RR R S+ R RRR R RR RRR R
Sbjct: 487 RRPARPSSKDLERPPGGRRRMASVPGFRPYSVARRGRRRPPPPAPR 532
Score = 32.4 bits (74), Expect = 1.3
Identities = 14/46 (30%), Positives = 15/46 (32%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
RR R + R RRR R RR RRR R
Sbjct: 487 RRPARPSSKDLERPPGGRRRMASVPGFRPYSVARRGRRRPPPPAPR 532
Score = 29.7 bits (67), Expect = 10.0
Identities = 14/46 (30%), Positives = 15/46 (32%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
RR R + R RRR R RR RRR R
Sbjct: 487 RRPARPSSKDLERPPGGRRRMASVPGFRPYSVARRGRRRPPPPAPR 532
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 34.8 bits (80), Expect = 0.25
Identities = 17/65 (26%), Positives = 37/65 (56%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E E+ + + ++EEEE ++E + + E ++ E EE + ++ E+E ++E+E E
Sbjct: 379 EAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELE 438
Query: 1018 EEEKK 1022
E + +
Sbjct: 439 EAQPE 443
Score = 33.6 bits (77), Expect = 0.59
Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 957 KEEEEEEKKKE--EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+E E+ K E +++EEE +++ + + E+ + EE+ + ++ E+E + E+E
Sbjct: 377 DQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDE 436
Query: 1015 EKEEEEKKRRRIR 1027
+E + ++ R
Sbjct: 437 LEEAQPEEEEEAR 449
Score = 33.2 bits (76), Expect = 0.82
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
K E +E E+ K E +++EE++ + E +++ + E+ + EE E
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLP 427
Score = 31.3 bits (71), Expect = 2.6
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
R + E EE+ + E+ + EE + E + E+E+E ++ + EEE+E
Sbjct: 392 REEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 31.3 bits (71), Expect = 3.0
Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK---KKEEEKEEEEK 1010
E+ + + ++++EE +++ E + + E+ ++ EE+ + ++ E+E E+E++
Sbjct: 377 DQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDE 436
Query: 1011 KEEEEKEEEEKKR 1023
EE + EEEE+ R
Sbjct: 437 LEEAQPEEEEEAR 449
Score = 30.5 bits (69), Expect = 5.2
Identities = 14/64 (21%), Positives = 35/64 (54%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+ E +++ E+ K E +++E + + E ++ E E+ ++ +E+ + E E++
Sbjct: 371 KDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDE 430
Query: 1017 EEEE 1020
E+E
Sbjct: 431 FEDE 434
Score = 30.5 bits (69), Expect = 5.5
Identities = 14/58 (24%), Positives = 33/58 (56%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
R + + E EE + E+ ++ EE+ + +E E++ ++E+E ++ + +EEE+
Sbjct: 392 REEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 33.7 bits (77), Expect = 0.25
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 2/107 (1%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
+RS++ R R + ++ RR+ R R R+R+++R+ R SG E K++
Sbjct: 2 KRSKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRKGLASGSRHSGGNENSGNKQQN 61
Query: 968 EKKKEEEEKKKKE--GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+KK KK G T+K K+ + + EK K + E E E E
Sbjct: 62 QKKDPRIGSKKPIPLGVTEKVTKQHKPKSEKPKLSPQAELELLENDE 108
Score = 32.5 bits (74), Expect = 0.56
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
+R KK RR R + ++ RR+ R R R+R+++R+ R E
Sbjct: 2 KRSKKTRRPRSKAD-------KKARRKTREELDAEARDRKRQKKRKGLASGSRHSGGNEN 54
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K++ +KK+ KK EK ++ + K +K K + E E E +E+
Sbjct: 55 SGNKQQNQKKDPRIGSKKPIPLGVTEKVTKQHKPKSEKPKLSPQAELELLENDER 109
Score = 32.1 bits (73), Expect = 0.72
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE 972
+RS++ RR R + ++ RR+ R R R+R+++R+ SG E
Sbjct: 2 KRSKKTRRPRSKADKKARRKTREELDAEARDRKRQKKRKGLASGSRHSGGN----ENSGN 57
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+++ +KK+ + ++ EK K+ + + E+ + + E E E R
Sbjct: 58 KQQNQKKDPRIGSKKPIPLGVTEKVTKQHKPKSEKPKLSPQAELELLENDER 109
>gnl|CDD|236295 PRK08570, rpl19e, 50S ribosomal protein L19e; Reviewed.
Length = 150
Score = 33.3 bits (77), Expect = 0.25
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
K KK GR R R +KR++ RRR R+ ++ R ++ R R R RR R R
Sbjct: 53 KPKKGISRGRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINRIRALRRYLRELRDE 112
Score = 29.8 bits (68), Expect = 3.7
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 820 RRRRRKKKEEKKKWKRRGGGRRR-----RRGKKEEEKKK 853
R R R++ E++KK +RRG G R+ R KKE +
Sbjct: 60 RGRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINR 98
Score = 29.4 bits (67), Expect = 5.4
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 889 EKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
+ K K+G R R R ++R+ RRR R+ ++ R ++ R R R RR R R
Sbjct: 51 KAKPKKGISRGRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINRIRALRRYLRELR 110
Query: 949 RR 950
Sbjct: 111 DE 112
Score = 29.1 bits (66), Expect = 5.9
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
R R+R R +R++ RRR R+ ++ R ++ R R R RR R ++E + ++K
Sbjct: 60 RGRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINRIRALRRYLRELRDEGKIDRK 118
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
CCCH-type Zn-finger protein [General function prediction
only].
Length = 299
Score = 34.3 bits (78), Expect = 0.26
Identities = 19/68 (27%), Positives = 38/68 (55%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
++++ SGK+ + +K+ E K + K + K + K+ E K++ +K+E+ EE
Sbjct: 8 KKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEKMRMEE 67
Query: 1010 KKEEEEKE 1017
K+ E EK+
Sbjct: 68 KRREPEKQ 75
Score = 32.0 bits (72), Expect = 1.7
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEG--KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
++ KK++E K+ +KE KT + K + + K+ E +E+ E++E
Sbjct: 2 PPKKMAKKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKE 61
Query: 1016 KEEEEKKRR 1024
K E+KRR
Sbjct: 62 KMRMEEKRR 70
Score = 31.2 bits (70), Expect = 2.6
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
KK KK++E KK K+ E K + K + K + ++ + +++ E+K+
Sbjct: 2 PPKKMAKKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKE 61
Query: 1023 RRRIRRKR 1030
+ R+ KR
Sbjct: 62 KMRMEEKR 69
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 34.7 bits (79), Expect = 0.26
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 881 RRSGKEEEE--KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
++SG + K K G + +K +R++R + R + RR R + ++R R R
Sbjct: 358 KKSGVRDFGPCKAAKTASGCAKSGEKKVKRKARLEKMRAKCRRAVGNRMKGSMKKRVRSR 417
Query: 939 RRRRRRRRRRRRRRRR 954
++ + RR R
Sbjct: 418 AKKFGEAAKSGVRRYR 433
>gnl|CDD|203146 pfam04995, CcmD, Heme exporter protein D (CcmD). The CcmD protein
is part of a C-type cytochrome biogenesis operon. The
exact function of this protein is uncertain. It has been
proposed that CcmC, CcmD and CcmE interact directly with
each other, establishing a cytoplasm to periplasm haem
delivery pathway for cytochrome c maturation. These
proteins contain a predicted transmembrane helix.
Length = 46
Score = 30.9 bits (71), Expect = 0.26
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRR 936
S RRRRR R R R RR
Sbjct: 25 SLRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 917 RRRRRRRRRRRRRRRRRRRRR 937
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 918 RRRRRRRRRRRRRRRRRRRRR 938
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 919 RRRRRRRRRRRRRRRRRRRRR 939
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 920 RRRRRRRRRRRRRRRRRRRRR 940
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 921 RRRRRRRRRRRRRRRRRRRRR 941
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 922 RRRRRRRRRRRRRRRRRRRRR 942
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 923 RRRRRRRRRRRRRRRRRRRRR 943
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 924 RRRRRRRRRRRRRRRRRRRRR 944
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 925 RRRRRRRRRRRRRRRRRRRRR 945
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 926 RRRRRRRRRRRRRRRRRRRRR 946
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 927 RRRRRRRRRRRRRRRRRRRRR 947
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 928 RRRRRRRRRRRRRRRRRRRRR 948
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 929 RRRRRRRRRRRRRRRRRRRRR 949
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 930 RRRRRRRRRRRRRRRRRRRRR 950
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 931 RRRRRRRRRRRRRRRRRRRRR 951
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 932 RRRRRRRRRRRRRRRRRRRRR 952
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 933 RRRRRRRRRRRRRRRRRRRRR 953
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 28.9 bits (66), Expect = 1.2
Identities = 10/21 (47%), Positives = 10/21 (47%)
Query: 934 RRRRRRRRRRRRRRRRRRRRR 954
RRRRR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
Score = 27.4 bits (62), Expect = 3.9
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 912 RRRSRRRRRRRRRRRRRRRRR 932
RR RR R R R RR
Sbjct: 26 LRRRRRLLRELARLEAREARR 46
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 34.8 bits (80), Expect = 0.27
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
RR R E E+ E+K+ K K E E+K KE K+ E + + ++ E + + +++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 1011 KEE 1013
+E
Sbjct: 66 MQE 68
Score = 34.8 bits (80), Expect = 0.28
Identities = 13/63 (20%), Positives = 33/63 (52%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
+R R + R +R R++R + + R R+ + ++R +R RR + + + + +++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 966 KEE 968
+E
Sbjct: 66 MQE 68
Score = 32.9 bits (75), Expect = 0.94
Identities = 11/62 (17%), Positives = 31/62 (50%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
RR R + R +R R++R + + R R+ + ++R E + ++ + + + + ++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 979 KE 980
+
Sbjct: 66 MQ 67
Score = 32.9 bits (75), Expect = 1.1
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
RR R+K R +R R +R + + R R+ + ++R +R RR + +++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 961 EEE 963
+E
Sbjct: 66 MQE 68
Score = 32.5 bits (74), Expect = 1.3
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
RR R K R R R+ R + + R R+ + ++R +R RR + ++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 960 EEE 962
+E
Sbjct: 66 MQE 68
Score = 31.8 bits (72), Expect = 2.3
Identities = 14/63 (22%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 908 RRSRRRRSRRRRRRRRRRR-RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
RR+R + R +R R++R + + R R+ + ++R +R RR E + + ++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 967 EEK 969
++
Sbjct: 66 MQE 68
Score = 31.0 bits (70), Expect = 3.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 879 RRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRR 925
RR R E E++++K+ + R RK + + ++R +R RR
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRR 52
Score = 30.6 bits (69), Expect = 4.8
Identities = 16/63 (25%), Positives = 32/63 (50%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK 988
RR R + R +R R++R + + R R KEE ++++ E + E + K +++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 989 KKE 991
+E
Sbjct: 66 MQE 68
Score = 30.2 bits (68), Expect = 6.8
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 882 RSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
R +E+ E++++E RK+R + + R R+ + ++R +R RR
Sbjct: 6 RRAREKLEREQRE---------RKQRAKLKLERERKAKEEAAKQREAIEAAQRSRR 52
Score = 30.2 bits (68), Expect = 7.4
Identities = 11/63 (17%), Positives = 32/63 (50%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
RR R + R +R R++R + + R R+ + ++R + + + + + + + +++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIKADQQ 65
Query: 978 KKE 980
+E
Sbjct: 66 MQE 68
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen Zg14,
is the Rrp7p homolog mainly found in Metazoans. The
cellular function of Rrp7A remains unclear currently.
Both Rrp7p and Rrp7A harbor an N-terminal RNA recognition
motif (RRM), also termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7 domain.
Length = 118
Score = 32.6 bits (75), Expect = 0.27
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 21/87 (24%)
Query: 958 EEEEEEKKKEEKKKEEEEK-------KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE--- 1007
++ EEE+K+E K+ E + K K ++ E + K+K+KK+++K+E
Sbjct: 31 DKREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELED 90
Query: 1008 -------EEKKEEE----EKEEEEKKR 1023
E+KKEE +K EE+KKR
Sbjct: 91 FYRFQIREKKKEELAELRKKFEEDKKR 117
Score = 31.5 bits (72), Expect = 0.62
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 16/85 (18%)
Query: 937 RRRRRRRRRRRRRR------------RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT- 983
+R + + R R R GK EE + + K+KE+++KKKKE +
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDF 91
Query: 984 ---KKEEKKKEEEEEKKKKKKEEEK 1005
+ EKKKEE E +KK +E++K
Sbjct: 92 YRFQIREKKKEELAELRKKFEEDKK 116
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 35.0 bits (80), Expect = 0.27
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE----EEEEKKKKKKEEEKEEEEK 1010
++E+ K E ++ ++E+ E + ++ E ++ + EEEKEEEE
Sbjct: 727 KLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEEN 786
Query: 1011 KEEEEKEEEEKKRRR 1025
KE K ++K+R+
Sbjct: 787 KEVSAKRAKKKQRKN 801
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 33.8 bits (77), Expect = 0.28
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 844 RGKKEEEKKKKKEEEEEGGEKE----EEEGGGGGG 874
GKK+E+KKK+ E+ +GGEK E +G G G
Sbjct: 91 GGKKKEKKKKETEKPAQGGEKPDQGPEAKGEGEGH 125
Score = 32.2 bits (73), Expect = 0.82
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
K+ + KK+E +K + +K + E K E E E E+ E+
Sbjct: 93 KKKEKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPED 134
Score = 29.5 bits (66), Expect = 6.3
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
KK+ K KKE +K + EK + E + E E + E+ E+
Sbjct: 93 KKKEKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPED 134
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 34.5 bits (80), Expect = 0.28
Identities = 11/81 (13%), Positives = 32/81 (39%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
+K R + + ++++ + + RR + + ++ + R +R + + EE
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEER 298
Query: 962 EEKKKEEKKKEEEEKKKKEGK 982
++ + K+ GK
Sbjct: 299 PVEEGKPLAFRFPPPGKRLGK 319
Score = 33.8 bits (78), Expect = 0.49
Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 872 GGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRR--RRR 929
G +++ + +E E + ++ RR + S+ ++ + R +R +
Sbjct: 232 KGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLE 291
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R R + R +R GK
Sbjct: 292 ARLAEERPVEEGKPLAFRFPPPGKRLGK 319
Score = 33.4 bits (77), Expect = 0.63
Identities = 11/78 (14%), Positives = 30/78 (38%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
++ +R R ++++ + + RR + + ++ + R +R + EE
Sbjct: 239 LEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEER 298
Query: 961 EEEKKKEEKKKEEEEKKK 978
E+ K + K+
Sbjct: 299 PVEEGKPLAFRFPPPGKR 316
Score = 32.6 bits (75), Expect = 1.3
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 957 KEEEEEEKKKEEKKKEEE--EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+E EK+++E KE+E + K K+ K + + EK + + EE+ EE K
Sbjct: 248 QEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLA 307
Query: 1015 EKEEEEKKR 1023
+ KR
Sbjct: 308 FRFPPPGKR 316
Score = 31.8 bits (73), Expect = 1.9
Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 887 EEEKKKKEGGGGRRRRRRKKRRRSRRRR--SRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
E+K ++ R+ ++++ + RR + + ++ + R +R + R
Sbjct: 239 LEQKAERL----RQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARL 294
Query: 945 RRRRRRRRRRSGKEEEEEEKKK 966
R + K+
Sbjct: 295 AEERPVEEGKPLAFRFPPPGKR 316
Score = 31.5 bits (72), Expect = 2.8
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 889 EKKKKEGGGGRRRRRRKKRRRSRRRRSR---RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
++K E R R+ + ++ ++ RR + + ++ + R +R + R
Sbjct: 239 LEQKAE----RLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARL 294
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKK 971
R K K
Sbjct: 295 AEERPVEEGKPLAFRFPPPGKRLGKL 320
Score = 29.9 bits (68), Expect = 9.2
Identities = 13/97 (13%), Positives = 33/97 (34%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
R K + S ++ R R+ ++++ + + RR + K+ +
Sbjct: 224 DRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSR 283
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
K+ E+ + E++ E + + K
Sbjct: 284 IKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKL 320
>gnl|CDD|215421 PLN02787, PLN02787, 3-oxoacyl-[acyl-carrier-protein] synthase II.
Length = 540
Score = 34.6 bits (79), Expect = 0.28
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 12/107 (11%)
Query: 884 GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRR------------ 931
E+ + GGR RRRRK+R+ S S
Sbjct: 24 AGEDAHQAVALQSGGRSRRRRKRRKCSSASGSASILVTSCLAFGPCTHYNSSGGNALSSL 83
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
R +RRR R R ++ + EK+ E KKK ++++
Sbjct: 84 FGSNSVSLNRNQRRRNRAARSGKAMAVAVQPEKEVETKKKPLTKQRR 130
Score = 34.2 bits (78), Expect = 0.44
Identities = 23/106 (21%), Positives = 31/106 (29%), Gaps = 19/106 (17%)
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRR-----------RRRRRRRRRRRR 933
E+ + R RR+++RR S
Sbjct: 23 CAGEDAHQAVALQSGGRSRRRRKRRKCSSASGSASILVTSCLAFGPCTHYNSSGGNALSS 82
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGK--------EEEEEEKKKEEKKK 971
R +RRR R RSGK E+E E KKK K+
Sbjct: 83 LFGSNSVSLNRNQRRRNRAARSGKAMAVAVQPEKEVETKKKPLTKQ 128
>gnl|CDD|216470 pfam01385, OrfB_IS605, Probable transposase. This family includes
IS891, IS1136 and IS1341. DUF1225, pfam06774, has now
been merged into this family.
Length = 226
Score = 33.8 bits (78), Expect = 0.28
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R +S + + R + + + RR+ R+ R R+R RR
Sbjct: 150 GRPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRR 194
Score = 33.8 bits (78), Expect = 0.31
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
R K + + R + + + RR+ R+ R R+R RR+
Sbjct: 151 RPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRRK 195
Score = 32.6 bits (75), Expect = 0.67
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
+ + R +S+ + S RR+ R+ R R+R RR+
Sbjct: 158 QYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRRK 195
Score = 32.6 bits (75), Expect = 0.74
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R + ++ + R + + + RR+ R+ R R+R RR+
Sbjct: 151 RPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRRK 195
Score = 32.6 bits (75), Expect = 0.76
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
+ +S + + R + + + RR+ R+ R R+R RR+
Sbjct: 151 RPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRRK 195
Score = 32.6 bits (75), Expect = 0.82
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
G + + + R + + RR+ R+ R R+R RR+
Sbjct: 150 GRPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRRK 195
Score = 32.2 bits (74), Expect = 0.93
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
G + + + R +S+ + RR+ R+ R R+R RR+
Sbjct: 150 GRPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRRK 195
Score = 31.9 bits (73), Expect = 1.2
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
GR + + R + + + RR+ R+ R R+R RR+
Sbjct: 150 GRPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRRK 195
Score = 31.1 bits (71), Expect = 2.7
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
R + + R + + + RR+ R+ R R+R RR+
Sbjct: 151 RPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRRK 195
Score = 30.3 bits (69), Expect = 3.8
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
R + + ++ + + + RR+ R+ R R+R RR+
Sbjct: 151 RPLKSINQYLNKEIARLQSKLKGSNRRKTSRKLARLHRKRSNRRK 195
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 34.4 bits (79), Expect = 0.29
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+ + + EEE EK+ E+ KEEE K+ + ++ +++EE K+ +EEKE EK +
Sbjct: 379 KEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLK 438
Query: 1013 EEEKEEEEKKRR 1024
E E E+ R
Sbjct: 439 MEASEVEKLFGR 450
Score = 30.2 bits (68), Expect = 7.4
Identities = 18/67 (26%), Positives = 38/67 (56%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E+ K+ + ++E E++ +K GK ++ K+ EE K+ +++E+ ++ +EEKE
Sbjct: 374 EKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKEL 433
Query: 1019 EEKKRRR 1025
EK +
Sbjct: 434 LEKLKME 440
Score = 29.4 bits (66), Expect = 10.0
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEK---KKE--EEEEKKKKKKEEEKEEEEKKEE 1013
EE E+ +E ++ EEE +K+ K KEE+ K+ EE K+ ++ EE +E KEE
Sbjct: 371 EEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEE 430
Query: 1014 EEKEEEEKKR 1023
+E E+ K
Sbjct: 431 KELLEKLKME 440
>gnl|CDD|227708 COG5421, COG5421, Transposase [DNA replication, recombination, and
repair].
Length = 480
Score = 34.7 bits (80), Expect = 0.29
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEK--KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
K+EE+ + + EK+ E+ EK +K +G+ EK EK K + E + +
Sbjct: 280 KKEEQTLRTRIEKELEKAEKSLEKLKGREFNCEKDARIAAEKILKDYSSVEFLEVDFKSK 339
Query: 1015 EKEEEEKKRR 1024
+K EE K+ R
Sbjct: 340 KKREEAKRGR 349
>gnl|CDD|218184 pfam04632, FUSC, Fusaric acid resistance protein family. This
family includes a conserved region found in two proteins
associated with fusaric acid resistance,from
Burkholderia cepacia and Klebsiella oxytoca. These
proteins are likely to be membrane transporter proteins.
Length = 649
Score = 34.5 bits (80), Expect = 0.29
Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 5/63 (7%)
Query: 896 GGGRRRRRRKKRRRSRR---RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
RR R RR R +RR R R R R + R RRR
Sbjct: 493 SAEWAARRL--LRALRRDLARAARRPGAGDRARFESRMYDRLAQLAPRLAAAPPARRRAL 550
Query: 953 RRS 955
R
Sbjct: 551 RDG 553
Score = 32.2 bits (74), Expect = 1.6
Identities = 11/34 (32%), Positives = 11/34 (32%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R RR R RR R RR R R
Sbjct: 490 RPVSAEWAARRLLRALRRDLARAARRPGAGDRAR 523
Score = 31.8 bits (73), Expect = 2.0
Identities = 13/40 (32%), Positives = 13/40 (32%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
S RR R RR R RR R R R R
Sbjct: 492 VSAEWAARRLLRALRRDLARAARRPGAGDRARFESRMYDR 531
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 32.9 bits (75), Expect = 0.30
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE-EKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
EEE+E+ +E ++ EEE+K K K ++E E ++ +K KK+EE EEE +
Sbjct: 29 ESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEEDEEEPQAAA 88
Query: 1014 EEKE 1017
EE+E
Sbjct: 89 EEEE 92
Score = 32.9 bits (75), Expect = 0.33
Identities = 22/80 (27%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK-----------KKKEEE 1004
G +E+E ++ E++ EE ++ +E + +++ K ++ EEE++ KKKEE+
Sbjct: 21 GGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEED 80
Query: 1005 KEEEEKKEEEEKEEEEKKRR 1024
+EE + EEE+ +K++
Sbjct: 81 EEEPQAAAEEEEGRLGRKKK 100
Score = 32.2 bits (73), Expect = 0.50
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K K+ EG E++ EE +E ++ +EE K + K E EE E R+ IR K
Sbjct: 17 KGMLGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKME----EEREVMRQGIRDK 71
Score = 31.8 bits (72), Expect = 0.82
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 10/76 (13%)
Query: 957 KEEEEEEKKKEEKKKEEEEK-----KKKEGKTKKEEKKKE-----EEEEKKKKKKEEEKE 1006
+E EEE K K K +EE E + K G KKEE ++E EEEE + +K++ E
Sbjct: 44 REAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEEDEEEPQAAAEEEEGRLGRKKKTPE 103
Query: 1007 EEEKKEEEEKEEEEKK 1022
E + EE EEEE+K
Sbjct: 104 ELAAEAGEEDEEEEEK 119
Score = 28.7 bits (64), Expect = 8.7
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 15/82 (18%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK--KKEEEKEE-------------E 1008
K+ E +E +E + +E +E EEE+K K K EEE+E +
Sbjct: 18 GMLGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKK 77
Query: 1009 EKKEEEEKEEEEKKRRRIRRKR 1030
E+ EEE + E++ R+ RK+
Sbjct: 78 EEDEEEPQAAAEEEEGRLGRKK 99
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 34.8 bits (81), Expect = 0.30
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+ ++E K++ + KE EEK+++ EK E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.5 bits (75), Expect = 1.6
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK 997
+ + +++ K++ EG KE ++KE++ EK
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 31.3 bits (72), Expect = 2.8
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 963 EKKKEEKKKEEEEKKKKEG-KTKKEE----KKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E++ + E G K K E + EEE K++ E +E +E+E+K
Sbjct: 479 EEELTSWESLLEWGGLPAGTKVAKGEPLFPRIDVEEEIAYIKEQMEGSAPKEPEEKEKKP 538
Query: 1018 EEE 1020
E+
Sbjct: 539 EKP 541
Score = 30.9 bits (71), Expect = 4.0
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 990 KEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+EE K++ + +E E+KE++ ++ E
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.5 bits (70), Expect = 4.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
++E +E+ E K+ EEKE++ +K E
Sbjct: 512 VEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.5 bits (70), Expect = 5.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
EEE K++ E +E +++E++ E+ E
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.8 bits (68), Expect = 9.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEE 987
EEE K++ + +E ++KE K +K E
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 34.4 bits (79), Expect = 0.31
Identities = 20/65 (30%), Positives = 33/65 (50%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+ + +EEE + + +K EE+ + KK E EE KK+K+KE+E+ E
Sbjct: 405 AILKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFV 464
Query: 1010 KKEEE 1014
+K E
Sbjct: 465 EKVLE 469
Score = 32.5 bits (74), Expect = 1.3
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
K+E +E+ +K+E++KEE + K + K E K K + KEEE + K E+
Sbjct: 366 EGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKVEK 425
Query: 1014 EEKEEEEKKRRRIRRK 1029
E++ + + + I++
Sbjct: 426 SEEDTLDLEIKSIKKY 441
Score = 31.7 bits (72), Expect = 2.1
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
++ + +EEE K + +K EE+ E K+ K+ E EE KK+K++E++ E
Sbjct: 405 AILKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFV 464
Query: 1011 KEEEE 1015
++ E
Sbjct: 465 EKVLE 469
Score = 31.7 bits (72), Expect = 2.1
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE-EE 1014
KE ++E K++ +KKEEE+++ K + K E + K E KEEE K +
Sbjct: 364 LKEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKV 423
Query: 1015 EKEEEEKKRRRIRR 1028
EK EE+ I+
Sbjct: 424 EKSEEDTLDLEIKS 437
Score = 31.7 bits (72), Expect = 2.2
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
K E K+EE + K K++++ E + KK E +E +++KE+E++ E ++
Sbjct: 408 KNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEK 466
Score = 31.7 bits (72), Expect = 2.3
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK----EEEKEEEEKK 1011
K E + + + +EE+ K K +K E+ + E K KK E E+ ++EK+
Sbjct: 396 IKNEGKIISAILKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKE 455
Query: 1012 EEEEKEEEEKK 1022
+E+E+ E +K
Sbjct: 456 KEKERPEFVEK 466
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 34.6 bits (80), Expect = 0.33
Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGK--TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EE +K+ E++ EE EK E + T K E K + EE K E
Sbjct: 514 EEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLAHMGLPVPAEEAKVE 573
Query: 1019 EEKKRRRIRRKR 1030
+ + +++K+
Sbjct: 574 AVDEVKFLKKKK 585
>gnl|CDD|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed.
Length = 656
Score = 34.6 bits (80), Expect = 0.34
Identities = 14/54 (25%), Positives = 17/54 (31%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
R R R +RR+R R R R R R R R G +
Sbjct: 30 AGRVRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFRDA 83
Score = 32.3 bits (74), Expect = 1.6
Identities = 17/55 (30%), Positives = 20/55 (36%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
R R + SR R R R R R R RR+R R +G EE
Sbjct: 8 RERKDLQASRLDRWLERVLGRLAGRVRGRAARRQRLLADRVLAAAEALAGLSEEA 62
Score = 31.1 bits (71), Expect = 3.8
Identities = 14/55 (25%), Positives = 17/55 (30%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R R + R +RR+R R R R R R R R R
Sbjct: 27 GRLAGRVRGRAARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFR 81
>gnl|CDD|221893 pfam13010, pRN1_helical, Primase helical domain. This alpha helical
domain is found in a set of bacterial plasmid replication
proteins. The domain is found to the C-terminus of the
primase/polymerase domain. Mutants of this domain are
defective in template binding, dinucleotide formation and
conformation change prior to DNA extension.
Length = 135
Score = 32.9 bits (75), Expect = 0.34
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
GK+EEE+ ++ EK KEE K + K K E +EE +K KK EE KE
Sbjct: 2 GKKEEEDSEEDFEKLKEEMAKYDRF-KGKTVEAIREEVCKKIKKSLEELKE 51
>gnl|CDD|189037 cd09867, PIN_FEN1, PIN domain of Flap Endonuclease-1, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. Flap endonuclease-1 (FEN1) is
involved in multiple DNA metabolic pathways, including
DNA replication processes (5' flap DNA endonuclease
activity and double stranded DNA 5'-exonuclease activity)
and DNA repair processes (long-patch base excision
repair) in eukaryotes and archaea. Interaction between
FEN1 and PCNA (Proliferating cell nuclear antigen) is an
essential prerequisite to FEN1's DNA replication
functionality and stimulates FEN1 nuclease activity by
10-50 fold. FEN1 belongs to the FEN1-EXO1-like family of
structure-specific, 5' nucleases. These nucleases contain
a PIN (PilT N terminus) domain with a helical arch/clamp
region (I domain) of variable length (approximately 45
residues in FEN1 PIN domains) and a H3TH
(helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region are
involved in DNA binding. Nucleases within this group also
have a carboxylate-rich active site that is involved in
binding essential divalent metal ion cofactors
(Mg2+/Mn2+). FEN1 has a C-terminal extension containing
residues forming the consensus PIP-box -
Qxx(M/L/I)xxF(Y/F) which serves to anchor FEN1 to PCNA.
Length = 261
Score = 34.0 bits (79), Expect = 0.35
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
K E E+++++++E E++ EE KEE + EE K +R R
Sbjct: 88 KSGELEKRRERREEAEEKLEEAKEEGDAEEARKYAKRTVR 127
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 33.6 bits (77), Expect = 0.36
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE-----EEKKKKKKEEEKEEEEKKEEEEK 1016
E + ++++E +KKKE + ++ +K+ ++ EKK+K K + ++E E+ E
Sbjct: 119 ERRDLRIEERDEASEKKKE-ELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQFLAERD 177
Query: 1017 EEE 1019
+
Sbjct: 178 DFS 180
Score = 30.5 bits (69), Expect = 3.3
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 7/54 (12%)
Query: 947 RRRRRRRRSGKEEEEEEKKKE--EKKKEE-----EEKKKKEGKTKKEEKKKEEE 993
R RR R ++E E+KK+E EK ++E E +K+ KTK + +K+ E+
Sbjct: 118 RERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQ 171
Score = 29.3 bits (66), Expect = 8.3
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 20/83 (24%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK-----------KK 1001
R G+E E K +E + EE+ + EKKKEE EK +K KK
Sbjct: 105 RVEGEEPESIRKWRERRDLRIEERDEAS------EKKKEELIEKAQKEIDDFYENYNEKK 158
Query: 1002 EEEKEEEEKKEEE---EKEEEEK 1021
E+ K + K+ E+ E+++
Sbjct: 159 EKTKAQNRKEAEQFLAERDDFSS 181
Score = 29.3 bits (66), Expect = 9.5
Identities = 15/70 (21%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE--------EEKEEEE 1009
+ + E ++ E ++ E++ + + E +K++EE +K +KE EK+E+
Sbjct: 102 QADRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKT 161
Query: 1010 KKEEEEKEEE 1019
K + ++ E+
Sbjct: 162 KAQNRKEAEQ 171
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 31.0 bits (71), Expect = 0.36
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
RR KR+ + R RRR + +R+R++ R+RRR++ R
Sbjct: 17 RRFKRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAREE 64
Score = 30.2 bits (69), Expect = 0.63
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
RR ++K ++ R RRR + +R+R++ R+RRR++ R
Sbjct: 17 RRFKRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAREE 64
Score = 28.3 bits (64), Expect = 2.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
RR +R+ + R RRR + +R+R++ R+RRR++ R
Sbjct: 17 RRFKRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAREE 64
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B (IRAGA
and IRAGB). The function of MRVI1 is unknown although
mutations in the Mrvi1 gene induces myeloid leukaemia by
altering the expression of a gene important for myeloid
cell growth and/or differentiation so it has been
speculated that Mrvi1 is a tumour suppressor gene. IRAG
is very similar in sequence to MRVI1 and is an essential
NO/cGKI-dependent regulator of IP3-induced calcium
release. Activation of cGKI decreases IP3-stimulated
elevations in intracellular calcium, induces smooth
muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 34.2 bits (78), Expect = 0.37
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EEEKK K+ + +E E EE ++ +K EE + EE +KE+
Sbjct: 409 YSWADAEEEKKTKKLQDLREP---EGEEAVERTRKPSLSEEVAETEEWDKEQ 457
>gnl|CDD|204272 pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) is a widespread family of prokaryotic direct
repeats with spacers of unique sequence between
consecutive repeats. This protein family, typified by
YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas)
family strictly associated with the Ypest subtype of
CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas
Subtype Ypest protein 4.
Length = 182
Score = 33.3 bits (77), Expect = 0.37
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R + + R RRR + EEE + + K E+
Sbjct: 93 VTVSRVQAKSSPARLRRRLMKRAGLTEEEARARIPKSLEKRLD 135
Score = 31.8 bits (73), Expect = 1.1
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
R + + R RRR +R+G EEE K E++
Sbjct: 93 VTVSRVQAKSSPARLRRRLMKRAGLTEEEARA---RIPKSLEKRLD 135
Score = 31.4 bits (72), Expect = 1.3
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
R + + R RRR +R EEE + K E+
Sbjct: 93 VTVSRVQAKSSPARLRRRLMKRA---GLTEEEARARIPKSLEKRLD 135
Score = 31.0 bits (71), Expect = 1.9
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
R + + R RRR +R + +E K EK+
Sbjct: 93 VTVSRVQAKSSPARLRRRLMKRAGLTEEEARARIPKSLEKRL 134
>gnl|CDD|235529 PRK05601, PRK05601, DNA polymerase III subunit epsilon; Validated.
Length = 377
Score = 34.0 bits (78), Expect = 0.37
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRR 931
+R +R R+R R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 33.3 bits (76), Expect = 0.75
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
+R+ +R R R R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 32.9 bits (75), Expect = 0.81
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
S +R+ R R R R RR R RRR+R
Sbjct: 142 SEAKRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 32.9 bits (75), Expect = 0.86
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
+R R R R R RR R RRR+R G
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQRVG 175
Score = 32.5 bits (74), Expect = 1.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
+R R+ R R+R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 32.5 bits (74), Expect = 1.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
++R R R R R RR R RRR+R
Sbjct: 144 AKRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 32.1 bits (73), Expect = 1.7
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
S +R R R R R RR R RRR+R
Sbjct: 142 SEAKRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 31.3 bits (71), Expect = 2.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
KR + R+ R R R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 31.3 bits (71), Expect = 2.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
+R R R R R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 31.3 bits (71), Expect = 2.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
+R R R R R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 31.3 bits (71), Expect = 2.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
+R R R R R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 31.3 bits (71), Expect = 2.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
+R R R R R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 31.3 bits (71), Expect = 2.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
+R R R R R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 31.3 bits (71), Expect = 2.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
+R R R R R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 31.3 bits (71), Expect = 2.7
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
+R R R R R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
Score = 30.2 bits (68), Expect = 6.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
K+ + R +R R R RR R RRR+R
Sbjct: 145 KRAMNAAARANRNRNRGNRRGGRGRRRQR 173
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There are
two completely conserved residues (G and F) that may be
functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 32.0 bits (73), Expect = 0.37
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK-------------KEEEEE 995
RRRRR KE+ ++ +E E+++ G+ + ++KK K+ +E
Sbjct: 23 NRRRRRQTKEQAIYGIFADDDDDDEGERRRGRGRRRSKKKKDYSKPVAFVSGGIKQAAKE 82
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEE 1019
++ KE+E E++++ +E++ E++
Sbjct: 83 PEEDDKEDESEDDDESDEDDDEDD 106
Score = 29.6 bits (67), Expect = 2.4
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 877 RRRRRRSGKEE-------EEKKKKEGGGGRRRRRRKKRRRSRRRR 914
RRRRR KE+ ++ EG R R RR+ +++ +
Sbjct: 23 NRRRRRQTKEQAIYGIFADDDDDDEGERRRGRGRRRSKKKKDYSK 67
Score = 28.5 bits (64), Expect = 7.3
Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 29/84 (34%)
Query: 818 GRRRRRRKKK---------EEKKKWKRRGGGRRRRRGK--------------------KE 848
RRRRR+ K+ ++ R GR RRR K KE
Sbjct: 23 NRRRRRQTKEQAIYGIFADDDDDDEGERRRGRGRRRSKKKKDYSKPVAFVSGGIKQAAKE 82
Query: 849 EEKKKKKEEEEEGGEKEEEEGGGG 872
E+ K++E E+ E +E++
Sbjct: 83 PEEDDKEDESEDDDESDEDDDEDD 106
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 34.3 bits (78), Expect = 0.39
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK------EEKKKEEEEKKKKEGKTKK 985
R+ + R++RR R +R+ G+ E E + E +E EE+
Sbjct: 39 RKEKACALRQQRRHRLQRQHGVIDGENSETERPRDLTAALFAEAGEEAEEEDNDRECPDT 98
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E ++++EEEE + E + E +E + ++ + R R
Sbjct: 99 EAEEEDEEEEIEAPDPEVNPLDAEGLSGLAREACDALKKALLRHR 143
Score = 32.0 bits (72), Expect = 1.9
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
R+ R++RR R +R+ R R +G+E EEE+ +E
Sbjct: 39 RKEKACALRQQRRHRLQRQHGVIDGENSETERPRDLTAALFAEAGEEAEEEDNDRECPDT 98
Query: 972 EEEEKKKKE 980
E EE+ ++E
Sbjct: 99 EAEEEDEEE 107
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 34.2 bits (78), Expect = 0.40
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 966 KEEKKKEEEEKKKK--EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E+ EE E+K + + EK+ ++ +K + E EE + EEE ++ E+
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYED 394
Score = 33.8 bits (77), Expect = 0.64
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGK---TKKEEKKKEEEEEKKKKKKEEEKEEE 1008
+ G EE E + + EK+ + + E + EE E +++ ++ E E +
Sbjct: 338 NEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDEND 397
Query: 1009 EKKEEEEKEEEEKKRRRIRRK 1029
K + +E E R K
Sbjct: 398 HSKRICDDDELENHFRAADEK 418
>gnl|CDD|237154 PRK12644, PRK12644, putative monovalent cation/H+ antiporter
subunit A; Reviewed.
Length = 965
Score = 34.5 bits (80), Expect = 0.40
Identities = 13/46 (28%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR-RRRRRRRRRRRRS 955
R RR R R R + RR R R RRS
Sbjct: 762 RNRRFGRAPRVSDAAGRAAGAAAKSAAATRRTWLRAGRTLAPERRS 807
>gnl|CDD|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated 2).
NSA2 appears to be a protein required for the maturation
of 27S pre-rRNA in yeast; it has been characterized in
mammalian cells as a nucleolar protein that might play a
role in the regulation of the cell cycle and in cell
proliferation.
Length = 257
Score = 33.8 bits (78), Expect = 0.42
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 13/79 (16%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK----------EEKKKEEEEEKKKK 999
R+R G+ + EE+K+ KKE E K+ K +K +++ KE+ + KK
Sbjct: 6 LHRKRHGRRLDHEERKR---KKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTI 62
Query: 1000 KKEEEKEEEEKKEEEEKEE 1018
K EE+ ++K +++ E
Sbjct: 63 KMHEERNVKQKVDDKVPEG 81
Score = 30.3 bits (69), Expect = 4.7
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK-KEEKKKEEEEKKKKEGKTKKEEKKKE 991
R+R RR R+R++ R + ++ +K + K K +K+ KE K+ K
Sbjct: 6 LHRKRHGRRLDHEERKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMH 65
Query: 992 EEEEKKKKKKEEEKEE 1007
EE K+K ++ E
Sbjct: 66 EERNVKQKVDDKVPEG 81
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 34.1 bits (78), Expect = 0.42
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 27/108 (25%)
Query: 824 RKKKEEKKKWKRRGGGRRRRRGKKE-EEKKKKKEE-----------------EEEGGEKE 865
+K K +K + K+ RR +E +E KK +EE EEE E++
Sbjct: 233 KKGKNKKGRGKKHNAFSRRGLSDEEYDEYKKIREERGGKYSIQEYLEDRERYEEELAERQ 292
Query: 866 EEEGGGGGGRR---------RRRRRRSGKEEEEKKKKEGGGGRRRRRR 904
E R+ R+ KEE K G R+R+
Sbjct: 293 ATEADFCEEEEAKIRQRIFGLRKTRKQRKEERAKLGLVTGSDIRKRKP 340
Score = 33.3 bits (76), Expect = 0.72
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 825 KKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSG 884
KK + KK ++ RR EE + KK EE GG+ +E R R
Sbjct: 233 KKGKNKKGRGKKHNAFSRRGLSDEEYDEYKKIREERGGKYSIQE-------YLEDRERYE 285
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
+E E++ E + ++R R++R++R+ R + R+R+
Sbjct: 286 EELAERQATEADFCEEEEAKIRQRIFGLRKTRKQRKEERAKLGLVTGSDIRKRKP 340
Score = 31.0 bits (70), Expect = 3.4
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 22/108 (20%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE------KKKKEGKTKKEEKKK--- 990
R +R R G + E E ++++E EGK K +K +
Sbjct: 185 RAVKRMFAEVWSRPPFGHDXEVTYYDGCESEEDDEGWYIEPQDATPEGKKGKNKKGRGKK 244
Query: 991 ----------EEEEEKKKKKKEEEKEE---EEKKEEEEKEEEEKKRRR 1025
+EE ++ KK +EE + +E E+ E+ EEE R+
Sbjct: 245 HNAFSRRGLSDEEYDEYKKIREERGGKYSIQEYLEDRERYEEELAERQ 292
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 33.9 bits (77), Expect = 0.42
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
+ R ++EEEE++ EE ++ EE + +E E+ +K++E+E + E E E
Sbjct: 98 KNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGE 157
Query: 1009 EKKEE 1013
EE
Sbjct: 158 YIIEE 162
Score = 32.3 bits (73), Expect = 1.4
Identities = 16/65 (24%), Positives = 38/65 (58%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+ EE++ +K++EE+E ++ + ++ E +EE ++ + +K++EKE + + +E
Sbjct: 93 LNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDEN 152
Query: 1015 EKEEE 1019
E E
Sbjct: 153 ELAGE 157
Score = 31.6 bits (71), Expect = 2.0
Identities = 15/65 (23%), Positives = 36/65 (55%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
++ +E +++++E++ EE E+ ++ ++E E+ E+ +K+ + E +E E E
Sbjct: 98 KNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGE 157
Query: 1014 EEKEE 1018
EE
Sbjct: 158 YIIEE 162
Score = 31.6 bits (71), Expect = 2.6
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EEE +K+EE+ ++ EE ++ E EE+ ++E+ +K +KE + E +E + E
Sbjct: 100 EEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYI 159
Query: 1018 EEE 1020
EE
Sbjct: 160 IEE 162
Score = 30.8 bits (69), Expect = 4.2
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
+S E + E + K EEE+ T+KEE++ E+ EE ++ ++ E EEE +E
Sbjct: 81 KSDNENDVELEGLNIIVKNEEERG-----TQKEEEEDEDVEEIEEVEEVEVVEEEYDDDE 135
Query: 1014 EEKEEEEK 1021
+ ++++EK
Sbjct: 136 DSEKDDEK 143
Score = 30.0 bits (67), Expect = 6.5
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
K +EE+ ++EE++ ++ + +E ++ E EE+ ++ EK++E++ + E E E
Sbjct: 98 KNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGE 157
Query: 1024 RRIR 1027
I
Sbjct: 158 YIIE 161
Score = 29.6 bits (66), Expect = 8.9
Identities = 14/62 (22%), Positives = 37/62 (59%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E + E + + EE++ + + +++E +E EE ++ + EEE +++E E+++++E
Sbjct: 85 ENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKE 144
Query: 1019 EE 1020
+
Sbjct: 145 SD 146
>gnl|CDD|236243 PRK08327, PRK08327, acetolactate synthase catalytic subunit;
Validated.
Length = 569
Score = 34.2 bits (79), Expect = 0.43
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
+ S RRR RRRR R R R+ +R R + R
Sbjct: 344 KSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 33.0 bits (76), Expect = 0.82
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
RRR RRRR R R R+ +R R + R
Sbjct: 350 ERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPA 388
Score = 32.7 bits (75), Expect = 1.2
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
+ + RRR RRRR R R R+ +R R + R
Sbjct: 344 KSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 32.3 bits (74), Expect = 1.4
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
K S RR RRRR R R R+ +R R + R
Sbjct: 344 KSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 32.3 bits (74), Expect = 1.4
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RRR RRRR R R R+ +R R + R
Sbjct: 350 ERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 31.5 bits (72), Expect = 2.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK 969
RRR RRRR R R R+ + K E E K
Sbjct: 350 ERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 31.5 bits (72), Expect = 2.5
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
RRR RRRR R R R+ +R R +
Sbjct: 350 ERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 31.1 bits (71), Expect = 3.8
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
++R R RR R R R+ +R R + R
Sbjct: 350 ERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 30.7 bits (70), Expect = 4.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
K + RRR+RRRR R R R+ +R R + R
Sbjct: 344 KSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 30.7 bits (70), Expect = 4.4
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
+ RR RRR R R R+ +R R + R
Sbjct: 344 KSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 30.7 bits (70), Expect = 5.3
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
+ + R R RRRR R R R+ +R R + R
Sbjct: 344 KSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 30.4 bits (69), Expect = 6.3
Identities = 12/35 (34%), Positives = 14/35 (40%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
RRR RRRR R R R+ +R R
Sbjct: 350 ERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 30.0 bits (68), Expect = 7.0
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 893 KEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
K RRR R++R R R R+ +R R + R
Sbjct: 344 KSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
Score = 30.0 bits (68), Expect = 7.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKK 970
RRR RRRR R R R+ + E E+ K+
Sbjct: 350 ERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGP 384
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 33.1 bits (76), Expect = 0.43
Identities = 19/74 (25%), Positives = 41/74 (55%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K ++ ++ EE+ +E E+ ++E + KEE K+E EE ++ ++ EKE E +++
Sbjct: 6 KLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIIS 65
Query: 1017 EEEEKKRRRIRRKR 1030
+ RR++ +
Sbjct: 66 SALLEARRKLLEAK 79
Score = 30.8 bits (70), Expect = 2.2
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ ++ +E EEE ++ +E +E E+ KEE ++E EE +R+
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAE 53
Score = 30.4 bits (69), Expect = 3.8
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
EK ++ +E EE+ ++ EE ++E E+ K++ K+E E+ EE + EKE E ++
Sbjct: 5 EKLIKKILREAEEEAEE----ILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERER 60
Query: 1023 RRRI 1026
+R I
Sbjct: 61 QRII 64
Score = 30.0 bits (68), Expect = 3.9
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK---EEEEKKRRRIR 1027
++ +K +E + + EE +E EE +K K+E ++E EE EE + +E E++R+RI
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRII 64
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 34.2 bits (78), Expect = 0.43
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKE--EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E E+ E + ++++ G + + + E +E E +E E E
Sbjct: 358 ESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVP 417
Query: 1020 EK 1021
EK
Sbjct: 418 EK 419
Score = 30.7 bits (69), Expect = 4.0
Identities = 6/62 (9%), Positives = 17/62 (27%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+ + + + E + + +E E + +K + K +E
Sbjct: 377 GDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAG 436
Query: 1019 EE 1020
Sbjct: 437 PG 438
>gnl|CDD|151477 pfam11030, Nucleocapsid-N, Nucleocapsid protein N. This is the N
protein of the nucleocapsid. The nucleocapsid functions
to protect the RNA against nuclease degradation and to
promote it's reverse transcription. The NC protein
promotes viral RNA dimerisation and encapsidation and
initiates reverse transcription by activating the
annealing of the primer tRNA to the initiation site.
Length = 167
Score = 32.8 bits (74), Expect = 0.43
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
G RR+R R RRR+ + R R+ R R + R + +R RR+
Sbjct: 32 GFRRQRNPGFRPMFNRRRNNNGNQNRGRQNRPRIQNNNRGNIINFQNNGQRANRRQ 87
Score = 31.3 bits (70), Expect = 1.4
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
G RR+R R RR + R R+ R R + R + +R RR+
Sbjct: 32 GFRRQRNPGFRPMFNRRRNNNGNQNRGRQNRPRIQNNNRGNIINFQNNGQRANRRQ 87
Score = 31.3 bits (70), Expect = 1.7
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
RR+R R R R + R R+ R R + R + +R RR++ +
Sbjct: 32 GFRRQRNPGFRPMFNRRRNNNGNQNRGRQNRPRIQNNNRGNIINFQNNGQRANRRQNNQP 91
Score = 30.9 bits (69), Expect = 2.0
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRR 931
RR+R G +++ G + R R+ + R R + +R RR+
Sbjct: 32 GFRRQRNPGFRPMFNRRRNNNGNQNRGRQNRPRIQNNNRGNIINFQNNGQRANRRQ 87
Score = 29.3 bits (65), Expect = 6.3
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
+R+R+ R RRR + R R+ R R + R + +R+ + + +
Sbjct: 32 GFRRQRNPGFRPMFNRRRNNNGNQNRGRQNRPRIQNNNRGNIINFQNNGQRANRRQNNQP 91
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 31.6 bits (72), Expect = 0.43
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
R +S+ +R +R ++ + R + + + R+RR + + RR+ KEE+E +K
Sbjct: 22 RPKSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKM 81
Query: 967 EEK--KKEEEEKKKKEGKTKK 985
K K+ E K++E + K
Sbjct: 82 AAKMHAKKVERLKRREKRNKL 102
Score = 30.8 bits (70), Expect = 0.83
Identities = 17/66 (25%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE------EKKR 1023
+K E++ +++ +E++ K+E+E +++++ + KE KEE+E+ E+ KK
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAAKMHAKKV 90
Query: 1024 RRIRRK 1029
R++R+
Sbjct: 91 ERLKRR 96
Score = 29.3 bits (66), Expect = 3.7
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE- 993
R + + +R +R +++ K E+E K ++E +++ + KE + KEEK++ E+
Sbjct: 22 RPKSKLTSWEKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKM 81
Query: 994 EEKKKKKKEEEKEEEEKKEEEEKE 1017
K KK E + EK+ + KE
Sbjct: 82 AAKMHAKKVERLKRREKRNKLLKE 105
>gnl|CDD|99918 cd05535, POLBc_epsilon, DNA polymerase type-B epsilon subfamily
catalytic domain. Three DNA-dependent DNA polymerases
type B (alpha, delta, and epsilon) have been identified
as essential for nuclear DNA replication in eukaryotes.
DNA polymerase (Pol) epsilon has been proposed to play a
role in elongation of the leading strand during DNA
replication. Pol epsilon might also have a role in DNA
repair. The structure of pol epsilon is characteristic
of this family with the exception that it contains a
large c-terminal domain with an unclear function.
Phylogenetic analyses indicate that Pol epsilon is the
ortholog to the archaeal Pol B3 rather than to Pol
alpha, delta, or zeta. This might be because pol epsilon
is ancestral to both archaea and eukaryotes DNA
polymerases type B.
Length = 621
Score = 34.2 bits (79), Expect = 0.44
Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 63/220 (28%)
Query: 566 EIKKLV-ESRRQVKALMKQPNL-----SSDLLMQYDIRQKALKLTANSMYGCLGFPNSRF 619
E K L +++++A + + +++ YD Q A K NS YG + SR+
Sbjct: 237 EYKGLHKVWKKKLEAAKAAGDAAEIKEAKKMVVLYDSLQLAHKCILNSFYGYVMRKGSRW 296
Query: 620 FAQPLAALVTAKGREILLNTKSLVENL---------------------NYEVIYGDTDSL 658
++ +A +V G I+ + LVE + N+ + +
Sbjct: 297 YSMEMAGIVCYTGANIIQMARELVEQIGRPLELDTDGIWCILPKSFPENFTFKTKNGKKV 356
Query: 659 MIS--CNVNDYDSVFKIGN--------------QIKSECNKLYKQLELDIDGVYKYMLL- 701
IS C + ++ K N + +SE + + ++DG YK M+L
Sbjct: 357 TISYPCVMLNHLVHKKFTNDQYQELVDPSTGTYETRSENS-----IFFEVDGPYKAMILP 411
Query: 702 -------LKKKKYAALSISKLSNGKMICSQEIKGVDVVRR 734
L KK+YA + +G + E+KG +V RR
Sbjct: 412 ASKEEGKLLKKRYAVFN----EDGSLA---ELKGFEVKRR 444
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This family
is a region of the Myb-Related Cdc5p/Cef1 proteins, in
fungi, and is part of the pre-mRNA splicing factor
complex.
Length = 363
Score = 33.9 bits (78), Expect = 0.44
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
EE+++ EE E++ ++ +++ ++ EE KE+EE +RR
Sbjct: 152 EEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRR 190
Score = 33.1 bits (76), Expect = 0.85
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 991 EEEEEKKKKKKEEEKEE--EEKKEEEEKEEEEKKRRR 1025
EEE E+ +++ EE+ + K+ EE +E+E+ RRR
Sbjct: 154 EEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRR 190
Score = 32.3 bits (74), Expect = 1.4
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
EEEEE+ ++ +EE +E+ ++ ++ EE K + R+R
Sbjct: 151 EEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRR 190
>gnl|CDD|217373 pfam03115, Astro_capsid, Astrovirus capsid protein precursor. This
product is encoded by astrovirus ORF2, one of the three
astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein
undergoes an intracellular cleavage to form a 79kD
protein. Subsequently, extracellular trypsin cleavage
yields the three proteins forming the infectious virion.
Length = 787
Score = 34.0 bits (78), Expect = 0.44
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 882 RSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
+S K+ + G R R K R RS+ R R + R + RR+ R + +
Sbjct: 4 KSDKQVTVEVNNNG-----RSRSKSRARSQSRGRGRSVKITVNSRNKGRRQNGRNKYQSN 58
Query: 942 RRRRRRRRRRRRRSG 956
+R R ++ R+ G
Sbjct: 59 QRVRNIVNKQLRKQG 73
Score = 32.8 bits (75), Expect = 1.0
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
R RS+ R R + R R R + R + RR+ R + + +R ++ +K
Sbjct: 18 RSRSKSRARSQSRGRGRSVKITVNSRNKGRRQNGRNKYQSNQRVRNIVNKQLRK 71
>gnl|CDD|153127 cd02436, Nodulin-21, Nodulin-21. Nodulin-21: This is a family of
proteins that may be unique to certain plants. The
family member in soybean is found to be nodule-specific
and is abundant during nodule development. The proteins
of this family thus may play a role in symbiotic
nitrogen fixation. .
Length = 152
Score = 32.6 bits (74), Expect = 0.44
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
R+ RR R R R R R R + E E ++
Sbjct: 59 RQYRRPRAARCLRGRNRARGPAPDSEPEGLRR 90
Score = 32.2 bits (73), Expect = 0.69
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
R+ RR R R R R R R + E
Sbjct: 59 RQYRRPRAARCLRGRNRARGPAPDSEPEGL 88
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded proton
translocating A0 complex. It is unclear precisely where
AhaH fits into these complexes.
Length = 85
Score = 31.4 bits (71), Expect = 0.45
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE--EEKEEEEKKEEE 1014
K+ EE+ ++ E+ +EE +++ E + + E +E EEE K +E +E EEE +KE E
Sbjct: 5 KKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAE 64
Query: 1015 EKEEEEKKRR 1024
+ EE +K
Sbjct: 65 KIREEGEKEI 74
Score = 29.0 bits (65), Expect = 2.4
Identities = 19/65 (29%), Positives = 37/65 (56%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE EEE+K+ + EE ++ E ++ K EE ++ +++ E+E E+ ++ E+E E
Sbjct: 16 EEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIE 75
Query: 1018 EEEKK 1022
+ K
Sbjct: 76 AMKSK 80
Score = 28.7 bits (64), Expect = 3.4
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
R+ E EE ++ ++ EEE K E K+ E++ E+E EK +++ E+E E +
Sbjct: 19 EEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMK 78
Query: 1010 KKEEE 1014
K +E
Sbjct: 79 SKAKE 83
Score = 27.9 bits (62), Expect = 6.5
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK-KE 1012
+E EE +++ +++ E ++ +E + EE+ + EE K+ +EE ++E EK +E
Sbjct: 9 EDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIRE 68
Query: 1013 EEEKEEEEKKRR 1024
E EKE E K +
Sbjct: 69 EGEKEIEAMKSK 80
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 34.1 bits (78), Expect = 0.46
Identities = 16/108 (14%), Positives = 40/108 (37%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK 969
R RRR R RRR +++++R + ++R S + +E + E
Sbjct: 18 RSRAPFYLPSRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLEN 77
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+ + T ++ ++ + + E++ ++ E+
Sbjct: 78 TSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQL 125
Score = 29.9 bits (67), Expect = 8.4
Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
R R RRR R RRR +++++R + ++ K + E + +
Sbjct: 18 RSRAPFYLPSRRRLAVSCRARRRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLEN 77
Query: 979 KEGKTKKEEKKKEEEEEKKKKK---KEEEKEEEEKKEEEEKEEEE 1020
+T E +K + + + +E E++ ++
Sbjct: 78 TSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDG 122
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 33.9 bits (79), Expect = 0.46
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 18/81 (22%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEG---------------KTKKEEKKKEEEEEKKKKKKE 1002
+EE E K+ + EE+KK+KE KT KE K +E K+K E
Sbjct: 502 DEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKELGDKVPADE--KEKIE 559
Query: 1003 EEKEE-EEKKEEEEKEEEEKK 1022
+E +E + E+KE + K
Sbjct: 560 AAIKELKEALKGEDKEAIKAK 580
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 33.9 bits (78), Expect = 0.47
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Query: 948 RRRRRRRSGKEEEEEE-----KKKEEKKKEEEEKKKKEGKTKKE----EKKKEEEEEKKK 998
R +RRR E +E K+ +++ E + +K+ K KE + KE+ E
Sbjct: 19 RESQRRRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIA 78
Query: 999 KKKEEEKE--EEEKKEEEEKEEEEKKRRRI 1026
+ KE +KE E+E + +E K + K + I
Sbjct: 79 ETKELKKEITEKEAEVQEAKAALDAKLKTI 108
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 33.9 bits (79), Expect = 0.47
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 962 EEKKKEEKKKEEE--EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+E+++E + + EE ++ K + K+K E+ E + +E KEE + E E E E
Sbjct: 34 DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELE 93
Query: 1020 EK 1021
+
Sbjct: 94 AE 95
>gnl|CDD|238706 cd01418, Ribosomal_L19e_A, Ribosomal protein L19e, archaeal. L19e
is found in the large ribosomal subunit of eukaryotes
and archaea. L19e is distinct from the ribosomal subunit
L19, which is found in prokaryotes. It consists of two
small globular domains connected by an extended segment.
It is located toward the surface of the large subunit,
with one exposed end involved in forming the
intersubunit bridge with the small subunit. The other
exposed end is involved in forming the translocon
binding site, along with L22, L23, L24, L29, and L31e
subunits.
Length = 145
Score = 32.3 bits (74), Expect = 0.48
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
K KK GR + R +KR++ RRR R+ ++ R ++ R + R RR + R +
Sbjct: 50 KPKKGISRGRLKERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIRALRRYLKELRDK 109
Query: 950 R 950
Sbjct: 110 G 110
Score = 28.8 bits (65), Expect = 7.8
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 893 KEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
KEG + ++ R R + R +R++ RRR R+ ++ R ++ R + R RR
Sbjct: 43 KEGVIKAKPKKGISRGRLKERHEKRKKGRRRGPGSRKGKKGARTPKKERWIKTIRALRRY 102
Query: 953 RRSGKEEEEEEKK 965
+ +++ + +KK
Sbjct: 103 LKELRDKGKIDKK 115
>gnl|CDD|165391 PHA03118, PHA03118, multifunctional expression regulator;
Provisional.
Length = 474
Score = 33.9 bits (77), Expect = 0.48
Identities = 13/52 (25%), Positives = 17/52 (32%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R+K R S R + R + R R R RR R R+
Sbjct: 143 RKKHRDESLRNKHGRPSGPPAMSPGEHFDQTHDAEYRLRFNERDARRDRIRK 194
Score = 32.7 bits (74), Expect = 1.2
Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR----------RRRRRRRRRR 940
+ E G +K +S ++SR++ R R + R +
Sbjct: 118 RDTEPGHAHIENGERKSPKSYNQQSRKKHRDESLRNKHGRPSGPPAMSPGEHFDQTHDAE 177
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE 972
R R R RR R KE + K E+ E
Sbjct: 178 YRLRFNERDARRDRIRKEYDIPTDKITEQAIE 209
Score = 31.2 bits (70), Expect = 3.0
Identities = 9/78 (11%), Positives = 27/78 (34%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
R + + R+ + ++ R++ R R + R + + E
Sbjct: 118 RDTEPGHAHIENGERKSPKSYNQQSRKKHRDESLRNKHGRPSGPPAMSPGEHFDQTHDAE 177
Query: 963 EKKKEEKKKEEEEKKKKE 980
+ + ++ ++ +KE
Sbjct: 178 YRLRFNERDARRDRIRKE 195
Score = 30.8 bits (69), Expect = 3.8
Identities = 11/72 (15%), Positives = 27/72 (37%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
R+ + ++ R++ R R + R SG + ++ E + E
Sbjct: 126 HIENGERKSPKSYNQQSRKKHRDESLRNKHGRPSGPPAMSPGEHFDQTHDAEYRLRFNER 185
Query: 982 KTKKEEKKKEEE 993
+++ +KE +
Sbjct: 186 DARRDRIRKEYD 197
>gnl|CDD|221517 pfam12300, DUF3628, Protein of unknown function (DUF3628). This
domain family is found in bacteria, and is typically
between 153 and 183 amino acids in length. The family is
found in association with pfam00270, pfam00271.
Length = 180
Score = 32.7 bits (74), Expect = 0.48
Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 27/99 (27%)
Query: 855 KEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRR 914
+E E +E GGG G R R GK + +GGGGRRR RK R R
Sbjct: 43 REAREVRAAQEWRRGGGRSGPGERSGRPVGKG---PRDGDGGGGRRRGPRKPRLEGERDS 99
Query: 915 S------------------------RRRRRRRRRRRRRR 929
+ R+RRRRRR R
Sbjct: 100 AADGAVTPVFGASAPRPPGIVAAPGEEVPRKRRRRRRGR 138
Score = 31.2 bits (70), Expect = 1.8
Identities = 29/120 (24%), Positives = 37/120 (30%), Gaps = 29/120 (24%)
Query: 854 KKEEEEEGGEKEEEEGGGGGGR--RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSR 911
+ E GE+ + G G R R R+ +E + G G R R K R
Sbjct: 19 RPERAPAAGEEASDGNGDSVGDIFREAREVRAAQEWRRGGGRSGPGERSGRPVGKGPRDG 78
Query: 912 RRRSRRRRRRRRRRRRRRR---------------------------RRRRRRRRRRRRRR 944
RRR R+ R R R+RRRRRR R
Sbjct: 79 DGGGGRRRGPRKPRLEGERDSAADGAVTPVFGASAPRPPGIVAAPGEEVPRKRRRRRRGR 138
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 33.0 bits (75), Expect = 0.48
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 957 KEEEEEEKKKEEKK--KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
EE E+E KEE+K ++ EG + E+ ++ + +++ + EE K++ ++KE E
Sbjct: 1 MEEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVE 60
Query: 1015 EKEEEEKKRR 1024
+E + +R
Sbjct: 61 AQEYLDIAQR 70
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 33.8 bits (78), Expect = 0.49
Identities = 14/58 (24%), Positives = 17/58 (29%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
R R + E + K G + RRR R RR R RR
Sbjct: 599 REVRAEYKEEDEGPLQGIKNTFGSLKDELFSDDYWDDDPWDNPMRRRDRGGRRSRNRR 656
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 34.0 bits (78), Expect = 0.50
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE---EEKKKKKKEEEKEEEE 1009
R +G + +++E E++ ++EE+ ++ E K E K+E+ E KK+KK+E +K E+
Sbjct: 23 RSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKELKKQKKQEIQKILEQ 82
Query: 1010 KKEEEEKEEEEKKRRRIR 1027
+ + + K + R++
Sbjct: 83 QNAAIDADMNNKGKGRLK 100
>gnl|CDD|144738 pfam01254, TP2, Nuclear transition protein 2.
Length = 132
Score = 32.0 bits (72), Expect = 0.50
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
+ K S SR + R+ + +R+ +R ++ + +RR SG++
Sbjct: 74 KHHKTTMHSHYSPSRPTTHSCSCPKNRKNLEGKVSKRKAVKRSKQVYKTKRRSSGRK 130
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45; Provisional.
Length = 193
Score = 32.8 bits (74), Expect = 0.51
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K + +E K+++ + E EK KKE + E+K E+ E+ + + EE E+EE+ EE++
Sbjct: 7 KNKAKEPKRRDIDELAEREKLKKEVEEIPEQKP-EDIVEELEDQPEEPPEQEEENEEQKP 65
Query: 1017 EEE 1019
+EE
Sbjct: 66 KEE 68
Score = 31.6 bits (71), Expect = 1.4
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 969 KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
K K +E K++ + + EK K+E EE ++K E+ EE E + EE E+EE+
Sbjct: 7 KNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEE 59
Score = 29.7 bits (66), Expect = 6.1
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
R+ + + +RR R + + EE E+K E+ +E E+ +E ++EE
Sbjct: 6 RKNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELED-------QPEEPPEQEE 58
Query: 993 EEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
E E++K K+E + +E K +EK ++ +R
Sbjct: 59 ENEEQKPKEEIDYPIQENKSFDEKNLDDLER 89
Score = 29.7 bits (66), Expect = 6.2
Identities = 19/84 (22%), Positives = 48/84 (57%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
R+ + + +R +E E +K +++ +E E+K ++ + E++ +E E++++ ++++
Sbjct: 6 RKNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKP 65
Query: 1005 KEEEEKKEEEEKEEEEKKRRRIRR 1028
KEE + +E K +EK + R
Sbjct: 66 KEEIDYPIQENKSFDEKNLDDLER 89
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists of
several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 30.9 bits (70), Expect = 0.52
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
KKK++K E E +EK E+ K KK++
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQ 61
Score = 29.4 bits (66), Expect = 1.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
K++++K E E ++K E+ K KK++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 28.6 bits (64), Expect = 4.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK---KEGKTKKEEKKKEEEEEKKK 998
+R +++ E E ++K EK K KKK +E K+ E +E KK
Sbjct: 28 HQRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKSLAEGSSAPFDETPKK 83
>gnl|CDD|220942 pfam11014, DUF2852, Protein of unknown function (DUF2852). This
bacterial family of proteins has no known function.
Length = 115
Score = 31.8 bits (73), Expect = 0.52
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK-KEEKKK 990
R RR R RRR R + SG E +E + + ++ EEE++ ++ + + K K
Sbjct: 44 RSCAGRRMRAGFRRRGGRMTMKSSGNEAFDEYRAETLRRLEEEQRAFEDFLERLRRAKDK 103
Query: 991 EE 992
EE
Sbjct: 104 EE 105
>gnl|CDD|226115 COG3587, COG3587, Restriction endonuclease [Defense mechanisms].
Length = 985
Score = 34.0 bits (78), Expect = 0.53
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKK----KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
KE +E K+ K+EEE K + GK E +K + K + E E ++
Sbjct: 563 KEINDESFIKQGFAKDEEELSKLILKERGKVLPETLEKLLFGDLIKDDYLDLNENEFAEK 622
Query: 1013 EEEKEE 1018
E E ++
Sbjct: 623 EPELDK 628
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 33.5 bits (77), Expect = 0.54
Identities = 20/75 (26%), Positives = 42/75 (56%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+E+E +++EE++ E+ ++ + + E+ +E+ E + +EE KEE KK +E
Sbjct: 31 SIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEA 90
Query: 1016 KEEEEKKRRRIRRKR 1030
EK + +I R++
Sbjct: 91 SSIIEKLQMQIEREQ 105
Score = 31.5 bits (72), Expect = 2.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
R + + EE E+ E + EE+ K+E K +E EK + + E E+EE
Sbjct: 50 REEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEA--SSIIEKLQMQIEREQEE 107
Query: 1008 EEKKEEEEKEEEEKK 1022
E++ E EE + +
Sbjct: 108 WEEELERLIEEAKAE 122
Score = 31.1 bits (71), Expect = 2.7
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+ K+KE ++EEEE+ ++ + +E K+ EE ++ + E EEE KEE K+
Sbjct: 28 KVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKT 87
Query: 1019 EEKKR 1023
+E
Sbjct: 88 DEASS 92
Score = 29.6 bits (67), Expect = 8.6
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+ E + EE+ KEE KK E + E+ + + E E+++ ++E E+ EE K E +E
Sbjct: 67 DAFEIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEE 126
Query: 1018 EEEKKR 1023
EK R
Sbjct: 127 GYEKGR 132
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 32.1 bits (73), Expect = 0.54
Identities = 16/71 (22%), Positives = 36/71 (50%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+ +EK+ E+++ E EE ++K+ K + ++ ++E++EE+ +
Sbjct: 39 AKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFATPSAVPQ 98
Query: 1019 EEKKRRRIRRK 1029
KK R+ +RK
Sbjct: 99 WGKKARKRQRK 109
Score = 30.9 bits (70), Expect = 1.6
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 821 RRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEG----GGGGGRR 876
+ R ++EE ++ K + R G ++ ++EE+ + G +R
Sbjct: 47 EKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFATPSAVPQWGKKARKR 106
Query: 877 RRRRRRSGKEEEEKKKKE 894
+R+ R E EE+ +++
Sbjct: 107 QRKVIRKLLEAEEQLRED 124
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 33.3 bits (76), Expect = 0.57
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
++ + + + KE+ ++ +E K K + E E++ + + EEE EE++ E++ +E
Sbjct: 231 KDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
Score = 32.6 bits (74), Expect = 0.91
Identities = 19/65 (29%), Positives = 29/65 (44%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+ E EE E + + K E + +EK + E E K K + E E + E+E E
Sbjct: 212 DGENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYE 271
Query: 1018 EEEKK 1022
EE +
Sbjct: 272 EEAGE 276
Score = 31.0 bits (70), Expect = 3.0
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
K+ E + + KE+ ++E E K + T + E + E E+E +++ EE +E E K EE
Sbjct: 231 KDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEE--QENEDKGEE 286
Score = 30.6 bits (69), Expect = 4.0
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK----KKEEEKEEEEKKEEE 1014
E EE + E + K + KE+ ++E E K K + E E E E++ EEE
Sbjct: 214 ENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEE 273
Query: 1015 EKEEEEKK 1022
EE+E +
Sbjct: 274 AGEEQENE 281
>gnl|CDD|190741 pfam03763, Remorin_C, Remorin, C-terminal region. Remorins are
plant-specific plasma membrane-associated proteins. In
tobacco remorin co-purifies with lipid rafts. Most
remorins have a variable, proline-rich C-half and a more
conserved N-half that is predicted to form coiled coils.
Consistent with this, circular dichroism studies have
demonstrated that much of the protein is alpha-helical.
Remorins exist in plasma membrane preparations as
oligomeric structures and form filaments in vitro. The
proteins can bind polyanions including the extracellular
matrix component oligogalacturonic acid (OGA). In vitro,
remorin in plasma membrane preparations is phosphorylated
(principally on threonine residues) in the presence of
OGA and thus co-purifies with a protein kinases(s). The
biological functions of remorins are unknown but roles as
components of the membrane/cytoskeleton are possible.
Length = 112
Score = 31.5 bits (72), Expect = 0.57
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE-KEEEEKKEEEEKEEEEKKRRRIRR 1028
EE EK K K ++EE K + E KKK K E E K+ E K E+++ E EK + ++
Sbjct: 14 EEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAEAAEKLKNKLAA 71
Score = 28.5 bits (64), Expect = 8.0
Identities = 34/93 (36%), Positives = 42/93 (45%), Gaps = 25/93 (26%)
Query: 960 EEEEKKKEEKKKEEEEKK------KKEGKTKKEEKKKEEEEEKKKKKKEE---------E 1004
EE EK K K + EE K KK+ K + E KK E + EKKK + E
Sbjct: 14 EEAEKAKINNKYQREEAKIQAWENKKKAKAEAELKKIERKLEKKKAEAAEKLKNKLAAAH 73
Query: 1005 KEEEEKK--------EEEEKEEEEKKRRRIRRK 1029
K+ EEK+ EEE K EE K +IR
Sbjct: 74 KKAEEKRATAEAKRGEEEAKAEE--KAAKIRAT 104
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated splicing
factor. The human PRP3 has been implicated in autosomal
retinitis pigmentosa.
Length = 222
Score = 33.1 bits (76), Expect = 0.58
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
+R++RRRR + GK ++ E+ + E K EEEE + E K + EK
Sbjct: 11 EAKRKKRRRRGLQFIEKGKFSQQAEELRREAKLEEEEARISEEAQNAGLKSATDLAEKIP 70
Query: 999 KKK 1001
KK+
Sbjct: 71 KKE 73
Score = 29.6 bits (67), Expect = 5.9
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 811 RLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEE 867
R++ +R +RRRR + EK K+ ++ RR K EEE+ + EE + G K
Sbjct: 8 RMAEAKRKKRRRRGLQFIEKGKFSQQ-AEELRREAKLEEEEARISEEAQNAGLKSAT 63
>gnl|CDD|215375 PLN02697, PLN02697, lycopene epsilon cyclase.
Length = 529
Score = 33.6 bits (77), Expect = 0.59
Identities = 17/59 (28%), Positives = 21/59 (35%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
RRRR RR R R R GK E +E+ +EE+ K G
Sbjct: 17 SPGWSSRRRRPVRRGNDVRSSRGLSCTVVATRGGKSGSESCVVVDEEFADEEDYIKAGG 75
Score = 30.9 bits (70), Expect = 4.4
Identities = 14/56 (25%), Positives = 17/56 (30%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
S SRRRR RR R R R + +EE+ K
Sbjct: 17 SPGWSSRRRRPVRRGNDVRSSRGLSCTVVATRGGKSGSESCVVVDEEFADEEDYIK 72
Score = 30.2 bits (68), Expect = 6.7
Identities = 15/56 (26%), Positives = 16/56 (28%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
RRRR RR R R R E EE EE+ K
Sbjct: 17 SPGWSSRRRRPVRRGNDVRSSRGLSCTVVATRGGKSGSESCVVVDEEFADEEDYIK 72
>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional.
Length = 774
Score = 33.8 bits (78), Expect = 0.62
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRR 934
R + RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRR 937
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRR 938
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRR 939
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRR 940
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRR 941
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRR 942
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRR 943
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRR 944
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRR 945
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRR 946
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRR 947
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRR 948
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 928 RRRRRRRRRRRRRRRRRRRRRR 949
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRR 950
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRR 951
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRR 952
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRR 953
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.7 bits (75), Expect = 1.2
Identities = 8/22 (36%), Positives = 8/22 (36%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRR 954
R RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.3 bits (74), Expect = 1.5
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRR 929
R + RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 32.3 bits (74), Expect = 1.5
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRR 933
R + RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 31.9 bits (73), Expect = 2.0
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 911 RRRRSRRRRRRRRRRRRRRRR 931
+ RR RRR RR
Sbjct: 285 TAANALPRRGLSALRRRPVRR 305
Score = 31.1 bits (71), Expect = 3.5
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRR 935
R+ RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 30.7 bits (70), Expect = 5.2
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRR 928
R + R RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 30.3 bits (69), Expect = 6.3
Identities = 9/22 (40%), Positives = 9/22 (40%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRR 924
R RR S RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 30.3 bits (69), Expect = 6.5
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRR 932
R + RR RRR RR
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
Score = 30.0 bits (68), Expect = 7.5
Identities = 7/22 (31%), Positives = 7/22 (31%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRS 955
R RR RRR R
Sbjct: 284 RTAANALPRRGLSALRRRPVRR 305
>gnl|CDD|216298 pfam01101, HMG14_17, HMG14 and HMG17.
Length = 93
Score = 30.9 bits (70), Expect = 0.62
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 949 RRRRRRSGK----EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
RR R S K + E + KK KKK+ K KK K KKE K++E +EE + E +
Sbjct: 20 RRSARLSAKPAPPKPEPKPKKAAAKKKKPAVKGKKGAKGKKETKQEEAKEENPAENGETK 79
Query: 1005 KEEEEKKEEEEKEE 1018
EE E E +E
Sbjct: 80 TEEAPASEAAEDKE 93
>gnl|CDD|223596 COG0522, RpsD, Ribosomal protein S4 and related proteins
[Translation, ribosomal structure and biogenesis].
Length = 205
Score = 32.7 bits (75), Expect = 0.62
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 898 GRRRRRRKKRRRSRRR----RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R +KK R + R + R+ + + + R ++ + R +++ R
Sbjct: 2 ARYPGPKKKLSRRLGFNPWLKERLCKERKLPYKPGQHGQERWKKLSDYGLQLREKQKLRA 61
Query: 954 RSGKEEEE 961
G E++
Sbjct: 62 FYGVLEKQ 69
Score = 31.1 bits (71), Expect = 2.3
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
G +++ RR G K++ + R+ + + + R ++ + R +++
Sbjct: 6 GPKKKLSRRLGFNPWLKERLC------KERKLPYKPGQHGQERWKKLSDYGLQLREKQKL 59
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGK 957
R ++ RR + R G
Sbjct: 60 RAFYGVLEKQFRRYLKEAGRLKGV 83
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 33.5 bits (76), Expect = 0.64
Identities = 42/194 (21%), Positives = 72/194 (37%), Gaps = 21/194 (10%)
Query: 825 KKKEEKK-----KWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGG-----GGG 874
+ +EE K K+ R R+ K K E ++ E +E GG G
Sbjct: 513 RNEEELKGVLGMKFMRDASNRQMAASKISVADLVKVENGDDIDVGELDEVGGDAIYANAG 572
Query: 875 RR------RRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
RR +RR+ + ++ +E + R + +R +
Sbjct: 573 RREVFPVVEQRRKLAPRKRKEDFVTPSTSLEKSMDRILHGQKKRAEGAVVFEKPLEATEN 632
Query: 929 RRR--RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
R+ RR +R +++ RR RR +R K+ EEE +E +KK+ G
Sbjct: 633 FNPWLDRKMRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQEN---HLGSEKKRHGGVPDI 689
Query: 987 EKKKEEEEEKKKKK 1000
K+ E E+ +K
Sbjct: 690 LLKEIEVEDDEKTP 703
Score = 33.5 bits (76), Expect = 0.70
Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
RR +RR+ R+R+ + R G+++ E EK E E
Sbjct: 573 RREVFPVVEQRRKLAPRKRKEDFVTPSTSLEKSMDRILHGQKKRAEGAVVFEKPLEATEN 632
Query: 977 KKKEGKTKKEE----KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
K KKK ++ K+ +++ EEE +E E+K+
Sbjct: 633 FNPWLDRKMRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKR 682
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle pole
microtubules during metaphase. In Xenopus, it has been
shown that Xklp2 protein is required for centrosome
separation and maintenance of spindle bi-polarity. TPX2
is a microtubule-associated protein that mediates the
binding of the C-terminal domain of Xklp2 to
microtubules. It is phosphorylated during mitosis in a
microtubule-dependent way.
Length = 57
Score = 30.0 bits (68), Expect = 0.65
Identities = 18/46 (39%), Positives = 31/46 (67%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
+E E++ + +KK EE+EK + K + E ++KEEEEE K+ ++E
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKE 49
Score = 27.7 bits (62), Expect = 3.6
Identities = 15/41 (36%), Positives = 29/41 (70%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
++ + +++ E+K+K E EKEE E +++EE+EE K+ R+
Sbjct: 8 EKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRK 48
Score = 27.0 bits (60), Expect = 8.9
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+++ E+ E KK +E+EK E +KEE E ++E++ I++ R
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLR 47
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 32.5 bits (74), Expect = 0.65
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
K+E ++K+ ++E +E KK+ +E +EE+++++ E+ EK+
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKE 47
Score = 31.7 bits (72), Expect = 1.4
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
KEE EK +++ +E KK+ + KEE ++++ + +K+ + + + K E++
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDK 61
Score = 30.6 bits (69), Expect = 2.7
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
S K+ +EE E KKE +E K+E + K+ + E+E K K ++ E++ + +
Sbjct: 7 PSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAKNKDLEDKYLRSQ 66
Query: 1014 EE 1015
E
Sbjct: 67 AE 68
Score = 30.2 bits (68), Expect = 3.6
Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 966 KEEKKKEEE-EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
KEE E++ +++ + K+E K+ +EE ++K+ E E+E + + K
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEIADLKAK 54
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 32.7 bits (75), Expect = 0.66
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
E ++ K+KEE EE ++ K +K E KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQK--VETKKKK 196
Score = 31.2 bits (71), Expect = 1.9
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKT-KKEEKKKE 991
+++EE EE+K+ KK K E KKK+
Sbjct: 162 AKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 30.8 bits (70), Expect = 2.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
E K K+ + E++KE KK +K E +KK+
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG
domain [Chromatin structure and dynamics].
Length = 211
Score = 32.9 bits (75), Expect = 0.66
Identities = 18/95 (18%), Positives = 37/95 (38%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT 983
+ + R R +R + ++ + G E E K + + + +K E
Sbjct: 117 KEPYYKEANSDRERYQREKEEYNKKLPNKAPIGPFIENEPKIRPKVEGPSPDKALVEETK 176
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+ E +E KKKK ++ K+ +E+ + E
Sbjct: 177 IISKAWSELDESKKKKYIDKYKKLKEEYDSFYPEA 211
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 32.3 bits (73), Expect = 0.66
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 966 KEEKKKEEEEKKKKE-GKT---KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
KE +E K++KE GKT K ++KKKE+ EKK K K++E++ K E E +E
Sbjct: 2 KETSYEEALAKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEPNQE 59
Score = 31.1 bits (70), Expect = 1.6
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 958 EEEEEEKKKEEKKKEEE--EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
EE +++KE K + + +KKKKE ++K+ K K++EE+ K E E +E + E
Sbjct: 7 EEALAKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEPNQEVTEVEVI 66
Query: 1016 KEEE 1019
E+E
Sbjct: 67 IEKE 70
Score = 29.9 bits (67), Expect = 3.5
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK------KKEEEEEKKKKKKEEEKE 1006
KE + + +K +KKK+E+ +KK KKEEK + E +E + + EKE
Sbjct: 15 KESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEPNQEVTEVEVIIEKE 70
Score = 29.2 bits (65), Expect = 5.9
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 959 EEEEEKKKEEKKKEEEEK--KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
EE K+++E K + +K KKK+ K +++ K +++EEK K E + +E E E
Sbjct: 7 EEALAKQRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEPNQEVTEVEVI 66
Query: 1017 EEEE 1020
E+E
Sbjct: 67 IEKE 70
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 31.4 bits (71), Expect = 0.66
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 967 EEKKKEEEEKKKKEGKTKKE----EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E + EE+EK +K +TKKE E K EE++ K K E K + +
Sbjct: 53 ESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDGAKA 108
Score = 28.7 bits (64), Expect = 5.2
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
+EE + +E +EK ++ E KK+ + E K EE++ + + E
Sbjct: 51 QEESRTAEE-----KEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPP 95
>gnl|CDD|189539 pfam00424, REV, REV protein (anti-repression trans-activator
protein).
Length = 90
Score = 30.9 bits (70), Expect = 0.67
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 915 SRRRRRRRRRRRRRRRRR 932
+ R+RR RRRR R+R+R+
Sbjct: 31 TARQRRNRRRRWRQRQRQ 48
Score = 30.5 bits (69), Expect = 1.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGK 957
R+RR RRRR R+R+R+ + +
Sbjct: 32 ARQRRNRRRRWRQRQRQILALAER 55
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 917 RRRRRRRRRRRRRRRRR 933
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 918 RRRRRRRRRRRRRRRRR 934
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 919 RRRRRRRRRRRRRRRRR 935
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 920 RRRRRRRRRRRRRRRRR 936
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 921 RRRRRRRRRRRRRRRRR 937
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 922 RRRRRRRRRRRRRRRRR 938
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 923 RRRRRRRRRRRRRRRRR 939
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 924 RRRRRRRRRRRRRRRRR 940
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 925 RRRRRRRRRRRRRRRRR 941
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 926 RRRRRRRRRRRRRRRRR 942
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 927 RRRRRRRRRRRRRRRRR 943
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 928 RRRRRRRRRRRRRRRRR 944
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 929 RRRRRRRRRRRRRRRRR 945
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 930 RRRRRRRRRRRRRRRRR 946
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 931 RRRRRRRRRRRRRRRRR 947
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 932 RRRRRRRRRRRRRRRRR 948
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 933 RRRRRRRRRRRRRRRRR 949
R+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 30.1 bits (68), Expect = 1.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 913 RRSRRRRRRRRRRRRRR 929
R RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 28.9 bits (65), Expect = 2.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 914 RSRRRRRRRRRRRRRRR 930
+RR RRRR R+R+R+
Sbjct: 32 ARQRRNRRRRWRQRQRQ 48
Score = 27.8 bits (62), Expect = 8.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 910 SRRRRSRRRRRRRRRRRR 927
+ R+R RRRR R+R+R+
Sbjct: 31 TARQRRNRRRRWRQRQRQ 48
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 33.0 bits (75), Expect = 0.67
Identities = 17/82 (20%), Positives = 36/82 (43%)
Query: 938 RRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKK 997
+R + + EE ++EK++ K+ EE E + +E + + + + E ++
Sbjct: 125 QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE 184
Query: 998 KKKKEEEKEEEEKKEEEEKEEE 1019
KK + + KK +E E
Sbjct: 185 MLKKLPGEVYDLKKRWDELEPG 206
Score = 31.0 bits (70), Expect = 3.3
Identities = 22/75 (29%), Positives = 39/75 (52%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+R + + +E +E K+K EE +K+KE K+ E+ + E EE +++ K E E +E
Sbjct: 125 QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE 184
Query: 1013 EEEKEEEEKKRRRIR 1027
+K E + R
Sbjct: 185 MLKKLPGEVYDLKKR 199
Score = 30.3 bits (68), Expect = 5.3
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE---EKKKEEE 974
+R + + + ++ + + + EE +E+ K E + EE
Sbjct: 125 QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE 184
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
KK G+ +K+ +E E + +EE + K+ ++
Sbjct: 185 MLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPKD 229
Score = 29.5 bits (66), Expect = 8.9
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
R+G + + + + K++ EE K+K + +KE+++ +E E+ + + EE +E ++ E
Sbjct: 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV 177
Query: 1014 EEKEEEEKKRRR 1025
E EE ++
Sbjct: 178 ENSRLEEMLKKL 189
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is a
family of uncharacterized proteins.
Length = 449
Score = 33.4 bits (76), Expect = 0.68
Identities = 10/47 (21%), Positives = 33/47 (70%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E +K GK +EE +EE+++++ +++++E++ +++++++E+
Sbjct: 35 ENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDED 81
Score = 31.5 bits (71), Expect = 2.5
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 885 KEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
++ +G GRRRR+R R +R RS R+ R R RR R R R
Sbjct: 250 SDDHFFLDLDGERGRRRRKRSPRTSPKRFRSPPPRKARGRSPRRLIRSPPPPGRLR 305
Score = 30.0 bits (67), Expect = 8.5
Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
KKE + K KE ++E ++E+++E+ ++E E+++ +++E +E+E
Sbjct: 33 KKENAIR----KLGKE--AEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
>gnl|CDD|140068 PTZ00033, PTZ00033, 60S ribosomal protein L24; Provisional.
Length = 125
Score = 31.5 bits (71), Expect = 0.69
Identities = 19/77 (24%), Positives = 33/77 (42%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEE 973
R + R R RR R+ R +RRR R + +R G + ++ + +K +
Sbjct: 46 RKKNPRFLPWTRTYRRINRKTTTDRVQRRRAARTVKVQRAIVGADLSYIQEVRAYVQKVD 105
Query: 974 EEKKKKEGKTKKEEKKK 990
K K + +K E+K
Sbjct: 106 RSAKAKAVRAEKAERKA 122
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 32.0 bits (73), Expect = 0.69
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
K+ EE+ +E + K ++ +E KE + K K K+ +KE+
Sbjct: 108 KKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
Score = 30.9 bits (70), Expect = 1.6
Identities = 11/63 (17%), Positives = 26/63 (41%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+ ++ + +K EE+ + E K +E + KE + + K ++ +
Sbjct: 96 EIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHD 155
Query: 1016 KEE 1018
KE+
Sbjct: 156 KEK 158
Score = 30.9 bits (70), Expect = 1.7
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK------KKEEEEEKKKKKKEEEKEEEEKK 1011
E E KK+ K +E ++ K K + KK EE+ EE E K
Sbjct: 71 ESAVESLKKKLKFEELDDLKITAENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKL 130
Query: 1012 EEEEKEEEEKK 1022
+E +E K
Sbjct: 131 TQESSSDESPK 141
Score = 30.5 bits (69), Expect = 2.3
Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE--EEEKKKKKKEEEKEEEEKKEEEE 1015
EE ++ K E + + + ++ K EE EE + K ++ ++ +E
Sbjct: 84 EELDDLKITAENEIKSIQDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEV 143
Query: 1016 KEEEEKKRRRIRRKR 1030
K + K ++ +++
Sbjct: 144 KLATKNKTKKHDKEK 158
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 32.9 bits (75), Expect = 0.70
Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 24/96 (25%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE----- 1013
EE E++KE++ + + + + K + + +K+K++++ + +E+KE
Sbjct: 106 EENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKERLVAEA 165
Query: 1014 -------------------EEKEEEEKKRRRIRRKR 1030
++KE+EEKK+ + ++R
Sbjct: 166 REHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRR 201
Score = 31.7 bits (72), Expect = 1.6
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 24/98 (24%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKK--------EGKTKKEEKKKEEEEEKKKKKKEEEKEE- 1007
++++E+E +++ ++ E + K + +K E+K +E+K++ E +E
Sbjct: 110 EQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKERLVAEAREHF 169
Query: 1008 ---------------EEKKEEEEKEEEEKKRRRIRRKR 1030
++K++EE+K+ +E KRR KR
Sbjct: 170 GYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRREKEEKR 207
Score = 30.2 bits (68), Expect = 4.9
Identities = 16/74 (21%), Positives = 37/74 (50%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
R ++R+R ++ R + R+ R R G + + + +E +++E+++KK+ K K
Sbjct: 141 RAQKRKREQKARAAKERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKR 200
Query: 987 EKKKEEEEEKKKKK 1000
+K+E+
Sbjct: 201 REKEEKRMAALVAA 214
Score = 29.4 bits (66), Expect = 8.6
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 17/100 (17%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKE--------EKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
R +++ + RR +E E + + +K + E+K + K +KE E E
Sbjct: 109 REQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKERLVAEAREH 168
Query: 996 -------KKKKKKE--EEKEEEEKKEEEEKEEEEKKRRRI 1026
+ + +E ++KE+EEKK+ +E + EK+ +R+
Sbjct: 169 FGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRREKEEKRM 208
>gnl|CDD|220172 pfam09309, FCP1_C, FCP1, C-terminal. The C-terminal domain of FCP-1
is required for interaction with the carboxy terminal
domain of RAP74. Interaction relies extensively on van
der Waals contacts between hydrophobic residues situated
within alpha-helices in both domains.
Length = 263
Score = 33.1 bits (75), Expect = 0.71
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE---------------KKKKK 1000
G ++ + EKKK +EE+E+ + K + ++E +E + K+
Sbjct: 159 GSDDSDSEKKKPPGNEEEQEQAPQPRKQQPPGPRREPDEGTPSSSERSNIGGRGPRGHKR 218
Query: 1001 KEEEKEEEEKKEEEEKE 1017
K E++EE+ + E E
Sbjct: 219 KLNEEDEEDAESESSFE 235
Score = 31.1 bits (70), Expect = 2.6
Identities = 16/85 (18%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE-------------GKTKKEEKKKEEEEEK 996
+++ G EEE+E+ + K++ +++ + G+ + K+K EE++
Sbjct: 166 EKKKPPGNEEEQEQAPQPRKQQPPGPRREPDEGTPSSSERSNIGGRGPRGHKRKLNEEDE 225
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEK 1021
+ + E E + EE E ++
Sbjct: 226 EDAESESSFESSNEDEEGSSSEADE 250
Score = 30.7 bits (69), Expect = 3.0
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
KE+ E KE E + + EKKK EE++E+ + +++ ++
Sbjct: 142 KEDLESMDKEVDDILGEGSDDSDSEKKKPPGNEEEQEQAPQPRKQQPPGPRREPDEG 198
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which can
also transport galactose. In the transport mechanism, two
Na+ ions first bind to the extracellular side of the
transporter and induce a conformational change in the
glucose binding site. This results in an increased
affinity for glucose. A second conformational change in
the transporter follows, bringing the Na+ and glucose
binding sites to the inner surface of the membrane.
Glucose is then released, followed by the Na+ ions. In
the process, hSGLT1 is also able to transport water and
urea and may be a major pathway for transport of these
across the intestinal brush-border membrane. hSGLT1 is
encoded by the SLC5A1 gene and expressed mostly in the
intestine, but also in the trachea, kidney, heart, brain,
testis, and prostate. The WHO/UNICEF oral rehydration
solution (ORS) for the treatment of secretory diarrhea
contains salt and glucose. The glucose, along with sodium
ions, is transported by hSGLT1 and water is either
co-transported along with these or follows by osmosis.
Mutations in SGLT1 are associated with intestinal glucose
galactose malabsorption (GGM). Up-regulation of
intestinal SGLT1 may protect against enteric infections.
SGLT1 is expressed in colorectal, head and neck, and
prostate tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 33.3 bits (76), Expect = 0.71
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK---KKE-----GKTKKEEKKKEEEEEK 996
R R + E+E + E + EE +K +K G + + K EEEE
Sbjct: 538 RNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEA 597
Query: 997 KKKKKEEEKEE 1007
K K + E
Sbjct: 598 ALKMKMTDTSE 608
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This family
consists of several uncharacterized plant proteins of
unknown function.
Length = 565
Score = 33.5 bits (76), Expect = 0.73
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
EEEEE + EE +EE +KE +EK +EEEEE+ K K+
Sbjct: 139 VLEEEEEVEMEE----DEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 32.7 bits (75), Expect = 0.74
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
R +++ KE E KK+ EEE+KKKK+ KK++ KK K
Sbjct: 154 ERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with
the myosin-like domain [Function unknown].
Length = 499
Score = 33.5 bits (76), Expect = 0.74
Identities = 13/113 (11%), Positives = 45/113 (39%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R+ R R+ R+ + ++ R ++ + + R E+ + + + + + +
Sbjct: 115 RQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQ 174
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
K+ + + + + + + + + ++E + + + EE RR +
Sbjct: 175 KQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQ 227
Score = 32.3 bits (73), Expect = 1.6
Identities = 24/218 (11%), Positives = 79/218 (36%), Gaps = 17/218 (7%)
Query: 791 EITKQLTKAPEGGKVCITQIRLSRNRRGRRRRR-RKKKEEKKKWKRRGGGRRRRRGKKEE 849
+I QL + R + R R +K ++E++ ++ R+ K ++
Sbjct: 78 DIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQ 137
Query: 850 EKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRR 909
E + ++ + + R ++ E+ + + + + +++ +
Sbjct: 138 ELARLTKQ----------------AQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASA 181
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK 969
++ + + R + + + R + R RR + +++ +
Sbjct: 182 TQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQIS 241
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
+K ++ + E ++E + + E + + ++E + E
Sbjct: 242 QKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLE 279
Score = 31.5 bits (71), Expect = 2.4
Identities = 26/211 (12%), Positives = 81/211 (38%), Gaps = 1/211 (0%)
Query: 820 RRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRR 879
R + R + E + R E +K ++E E +E + ++
Sbjct: 80 RPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAV-RQELAAARQNLAKAQQE 138
Query: 880 RRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
R K+ ++ + + +RR+ + + +S + ++ + + + + + R +
Sbjct: 139 LARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQI 198
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
+ + R ++ EE ++ + +++ + K ++ E+ ++++
Sbjct: 199 EQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERE 258
Query: 1000 KKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
++ + E + + E+E + E + R R
Sbjct: 259 RQLQRLETAQARLEQEVAQLEAYYQAYVRLR 289
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 33.7 bits (77), Expect = 0.76
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
KE K+K+EE++++K ++ + +E +E+ EEEEK
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 32.5 bits (74), Expect = 1.7
Identities = 13/34 (38%), Positives = 26/34 (76%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
K+ ++KKEE++E+K ++ + E+ +EE +EEE+
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 32.1 bits (73), Expect = 2.1
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
KE K KKEEK +E+ EE K ++ +EE EEEEK E E+
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEK 317
Score = 31.7 bits (72), Expect = 3.0
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
K+ +EKK+E++E+K +E KT++ +++ EEEE+ + E+ E K+
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 30.6 bits (69), Expect = 5.9
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
KE +EKK+++ + K EE K EE +E + +EEEK + E+ E KK
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDE---EFEEEEKGFYYELYEKVNIEANKK 325
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 31.4 bits (71), Expect = 0.78
Identities = 11/19 (57%), Positives = 17/19 (89%)
Query: 1001 KEEEKEEEEKKEEEEKEEE 1019
K E K+EE+K+EEEE+E++
Sbjct: 87 KAEAKKEEKKEEEEEEEDD 105
Score = 31.0 bits (70), Expect = 1.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEE 1014
K + KKEE+KEEEE++E++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.3 bits (63), Expect = 7.7
Identities = 11/13 (84%), Positives = 13/13 (100%)
Query: 984 KKEEKKKEEEEEK 996
KKEEKK+EEEEE+
Sbjct: 91 KKEEKKEEEEEEE 103
Score = 28.3 bits (63), Expect = 7.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEG 981
+ E KKEEKK+EEEE++ G
Sbjct: 85 GAKAEAKKEEKKEEEEEEEDDLG 107
Score = 28.3 bits (63), Expect = 7.9
Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 2/21 (9%)
Query: 1000 KKEEEKEEEEKKEEEEKEEEE 1020
K E +KEE KKEEEE+EE++
Sbjct: 87 KAEAKKEE--KKEEEEEEEDD 105
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that may
also include truncated forms and/or pseudogenes. Members
are predicted lipoproteins with a conserved signal
peptidase II processing and lipid attachment site. Note
that the name for certain characterized members, p72,
reflects an anomalous apparent molecular weight, given a
theoretical MW of about 61 kDa.
Length = 541
Score = 33.3 bits (76), Expect = 0.78
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 955 SGKEEEEEEKKKEEKK----KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
S + E++ E K E K+ + K+ E K + ++EE E++ + +
Sbjct: 31 SKQPEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKN 90
Query: 1011 KEEEEKEEEEKKR 1023
KEE EK ++E K+
Sbjct: 91 KEEIEKPKDEPKK 103
Score = 29.8 bits (67), Expect = 9.1
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 963 EKKKEEKKKEEEEK--KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
EKK E K E K KK + K E + E K ++ E+K + + +EE
Sbjct: 35 EKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNKEEI 94
Query: 1021 KKRRRIRRK 1029
+K + +K
Sbjct: 95 EKPKDEPKK 103
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 30.7 bits (70), Expect = 0.79
Identities = 17/49 (34%), Positives = 35/49 (71%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K ++E K++ EE EK +++ E E++E E+++E+ K E++R++I +R
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 29.6 bits (67), Expect = 1.6
Identities = 18/48 (37%), Positives = 36/48 (75%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
K +EE+K++ EE +K +T++E K++EE +EK+K+ EE +++ E++
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 29.2 bits (66), Expect = 2.9
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R+ + + R R R+ R R+ +R+R RR++ RR
Sbjct: 45 RKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 29.2 bits (66), Expect = 3.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
R+++ + R R R+ R R+ +R+R RR++ RR
Sbjct: 45 RKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 28.8 bits (65), Expect = 3.3
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
R+ + ++ ++R R R+ R R+ +R+R RR++ RR
Sbjct: 45 RKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 28.8 bits (65), Expect = 3.5
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
++R+ + R R R+ R R+ +R+R RR++ RR
Sbjct: 43 EERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 28.4 bits (64), Expect = 5.4
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
R + + R R R+ R R+ +R+R RR++ RR
Sbjct: 45 RKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 28.0 bits (63), Expect = 5.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
++ R+ + + R R R+ R R+ +R+R RR++ RR
Sbjct: 42 EEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 27.6 bits (62), Expect = 7.7
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
RK++ + R R+ R R+ +R+R RR++ RR
Sbjct: 45 RKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein (parp)
genes of Trypanosoma brucei encode a small family of
abundant surface proteins whose expression is restricted
to the procyclic form of the parasite. They are found at
two unlinked loci, parpA and parpB; transcription of both
loci is developmentally regulated.
Length = 145
Score = 31.9 bits (71), Expect = 0.80
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
E EEEE+ + E++ EEE + ++EG+ + E ++ EEE + + + E E E E + E E
Sbjct: 63 EPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119
Score = 31.1 bits (69), Expect = 1.3
Identities = 20/61 (32%), Positives = 33/61 (54%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+E +K + K + EK K G ++E E++++ + EE+ EEE + EEE EE
Sbjct: 29 DEPADKGITKGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEE 88
Query: 1019 E 1019
E
Sbjct: 89 E 89
Score = 30.7 bits (68), Expect = 1.8
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKK-EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+ EEEEE + EE+ +EE E +++ E + + EE +EE E + + + E E E E + E
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPE 119
Query: 1013 EE 1014
E
Sbjct: 120 PE 121
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 32.7 bits (75), Expect = 0.81
Identities = 23/109 (21%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 937 RRRRRRRRRRRRRRRRRRSG------KEEE-----EEEKKKEEKKKEEEEKKKKEGKTKK 985
R+ + R+ R +R ++EE E E ++E++ E+ ++ KE + +
Sbjct: 144 PEDRKEKPRKSRAELYKRIDADYYGYRDEEDGVLLEYEAEREKELIEKLVEEWKEIQDED 203
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKK-----EEEEKEEEEKKRRRIRRK 1029
+ +++E EE +++ E EE E+ EK++R + K
Sbjct: 204 LQAEEDEREEDIYIPLDDDAEFVAHVPVPTQEEVEEWLLEKRKRELLAK 252
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is involved
in determining the site of synaptic vesicle fusion. The
C-terminus is a PDZ-binding motif that binds directly to
RIM (a small G protein Rab-3A effector). The family also
contains four coiled-coil domains.
Length = 774
Score = 33.4 bits (76), Expect = 0.81
Identities = 39/200 (19%), Positives = 76/200 (38%), Gaps = 11/200 (5%)
Query: 842 RRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRR 901
R + E + ++ +EE+ G R R E + + ++ +
Sbjct: 347 ALRYELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQE 406
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
R+K RR + + R R + + + + R R + +R R E+EE
Sbjct: 407 TFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQEE 466
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEE-----------KKKEEEEEKKKKKKEEEKEEEEK 1010
E K+E + +EE + + K + E K + +++ + E E+
Sbjct: 467 FETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDLERAHIELEKI 526
Query: 1011 KEEEEKEEEEKKRRRIRRKR 1030
+E+ EK E+E KR R +
Sbjct: 527 REKHEKLEKELKRLRANPES 546
Score = 31.1 bits (70), Expect = 4.2
Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
++R R+ + R + + + +R R R R R S E
Sbjct: 511 KQRSDLERAHIELEKIREKHEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGARNE 570
Query: 962 EEKKKEEKKKEEEEKKKKE---GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
++ + +K E+E+ E G+ KE +K + K+++K E + E E+K E EE
Sbjct: 571 VDRLLDRLEKAEQERDDTEMEAGRLAKELEKAQRHLTKQQEKTEATRIEFERKSAELLEE 630
Query: 1019 EEKKRRRIRRKR 1030
E+ + +
Sbjct: 631 AERLEKSEAEEE 642
>gnl|CDD|110514 pfam01517, HDV_ag, Hepatitis delta virus delta antigen. The
hepatitis delta virus (HDV) encodes a single protein,
the hepatitis delta antigen (HDAg). The central region
of this protein has been shown to bind RNA. Several
interactions are also mediated by a coiled-coil region
at the N terminus of the protein.
Length = 194
Score = 32.1 bits (73), Expect = 0.82
Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Query: 819 RRRRRRKKKEEKKKW--KRRGGGRRRRRGKKEEEKKKKKEEEEE---GGEKEEEEGGGGG 873
+ ++ KK EE+ W G R+ + G+ K+ + ++ E G K GG
Sbjct: 36 KANKKIKKLEEENPWLGNVVGIIRKDKDGEGAPPAKRPRTDQMEVDSGPGKRPHAGGFTD 95
Query: 874 GRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRR 922
RR RRR K E KKK+ GG+ R ++ R R RR
Sbjct: 96 QERRDHRRR--KALENKKKQLSSGGKHLSREEEEELRRLTEEDEERERR 142
Score = 31.0 bits (70), Expect = 2.3
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 24/140 (17%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR-----------RSGK 957
+S RR+RR R + R++R + R+ ++ ++ R K
Sbjct: 3 QSEARRTRRGREEILEQWVEARKKREELEKDLRKANKKIKKLEEENPWLGNVVGIIRKDK 62
Query: 958 EEEEEEKKKEEKKKEEE------EKKKKEGKTKKEEK--KKEEEEEKKKKK-----KEEE 1004
+ E K + + E ++ G T +E + ++ + E KKK+ K
Sbjct: 63 DGEGAPPAKRPRTDQMEVDSGPGKRPHAGGFTDQERRDHRRRKALENKKKQLSSGGKHLS 122
Query: 1005 KEEEEKKEEEEKEEEEKKRR 1024
+EEEE+ +E+EE++RR
Sbjct: 123 REEEEELRRLTEEDEERERR 142
Score = 29.4 bits (66), Expect = 7.6
Identities = 28/145 (19%), Positives = 63/145 (43%), Gaps = 19/145 (13%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRR------------ 922
+ RR R G+EE ++ E R++R + + R+ + ++
Sbjct: 3 QSEARRTRRGREEILEQWVEA----RKKREELEKDLRKANKKIKKLEEENPWLGNVVGII 58
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGK 982
R+ + +R R + +R G ++E +++ ++++ E KKK+
Sbjct: 59 RKDKDGEGAPPAKRPRTDQMEVDSGPGKRPHAGGFTDQE---RRDHRRRKALENKKKQLS 115
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEE 1007
+ + +EEEEE ++ +E+E+ E
Sbjct: 116 SGGKHLSREEEEELRRLTEEDEERE 140
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 31.2 bits (71), Expect = 0.82
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 904 RKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
+ +R+R +++S + +++R++ R R ++ ++RRR
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 31.2 bits (71), Expect = 0.92
Identities = 8/40 (20%), Positives = 23/40 (57%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
R+R+ ++K ++ +++ ++ R R ++ ++RRR
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 30.9 bits (70), Expect = 1.1
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
R+RK++++S + ++R++ R R ++ ++RRR
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 30.5 bits (69), Expect = 1.5
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
R+R+ +++ ++ R++ R R ++ ++RRR
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 30.1 bits (68), Expect = 2.0
Identities = 9/40 (22%), Positives = 24/40 (60%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
R+R+++++ S+ + +R++ R R ++ ++RRR
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 30.1 bits (68), Expect = 2.1
Identities = 9/41 (21%), Positives = 24/41 (58%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R+R+ +++ + +++R++ R R ++ ++RRR S
Sbjct: 65 QRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 29.7 bits (67), Expect = 2.8
Identities = 8/40 (20%), Positives = 23/40 (57%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
+R+ +++ + +++R++ R R ++ ++RRR S
Sbjct: 67 KRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSSS 106
Score = 29.7 bits (67), Expect = 2.8
Identities = 9/46 (19%), Positives = 25/46 (54%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
+ +R R+ +++ + +++R++ R R ++ ++RRR S
Sbjct: 62 QQPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSSSS 107
Score = 29.7 bits (67), Expect = 3.1
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
+R+ ++K + +++R + R R ++ ++RRR
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 29.3 bits (66), Expect = 3.8
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
R++K ++ + +++R++ R R ++ ++RRR
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 28.5 bits (64), Expect = 7.8
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R+ + +++ + +++R++ R R ++ ++RRR S
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSSSSS 108
Score = 28.5 bits (64), Expect = 8.3
Identities = 7/43 (16%), Positives = 23/43 (53%)
Query: 905 KKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
+ +R+ + ++ + +++R++ R R ++ ++RRR
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 28.5 bits (64), Expect = 8.7
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
R R+ + + + +++R++ R R ++ ++RRR
Sbjct: 66 RKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
Score = 28.2 bits (63), Expect = 9.2
Identities = 8/43 (18%), Positives = 24/43 (55%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
+ +R+R +++ + +++R++ R R ++ ++RRR
Sbjct: 63 QPQRKRKEQQKSSQTHKKKRKKSRHVSSRSAKKISAKKRRRSS 105
>gnl|CDD|223037 PHA03301, PHA03301, envelope glycoprotein L; Provisional.
Length = 226
Score = 32.5 bits (74), Expect = 0.83
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRR 937
SRR R RR+ R R R R R
Sbjct: 204 SRRTPRPRRKPRGNRTRPSRPRN 226
Score = 32.1 bits (73), Expect = 1.2
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRR 934
RR+ R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.4 bits (71), Expect = 2.1
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRR 929
RR+ R R + R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRR 938
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRR 939
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRR 940
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRR 941
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRR 942
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRR 943
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRR 944
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRR 945
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRR 946
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRR 947
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRR 948
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 928 RRRRRRRRRRRRRRRRRRRRRR 949
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRR 950
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRR 951
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRR 952
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRR 953
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRR 954
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 31.0 bits (70), Expect = 2.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRS 955
RR R RR+ R R R R R+
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
Score = 30.2 bits (68), Expect = 4.6
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRR 932
SRR RR+ R R R R R
Sbjct: 204 SRRTPRPRRKPRGNRTRPSRPRN 226
Score = 29.8 bits (67), Expect = 6.5
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRR 933
RR R RR+ R R R R R
Sbjct: 205 RRTPRPRRKPRGNRTRPSRPRN 226
>gnl|CDD|227657 COG5354, COG5354, Uncharacterized protein, contains Trp-Asp (WD)
repeat [General function prediction only].
Length = 561
Score = 33.3 bits (76), Expect = 0.85
Identities = 29/137 (21%), Positives = 43/137 (31%), Gaps = 14/137 (10%)
Query: 861 GGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRR 920
G EE GG R K E KK R R ++ S R
Sbjct: 435 AGALYPEEARGGFKNFAWRPEPPSKLTIESAKKYVKPSRHRFVPFEKAVIMEADSANRSS 494
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRR----RRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R++ + + R ++ R + R RSG+E E + K E
Sbjct: 495 APRKKELVEQWPEYSDEDKIRSLLKKLRAIEALKERMRSGEELEVIQVNKIET------- 547
Query: 977 KKKEGKTKKEEKKKEEE 993
E + E K+ E+
Sbjct: 548 ---EEEVLSELKELVED 561
Score = 32.9 bits (75), Expect = 1.1
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 21/98 (21%)
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKK--------------------EEKKKEEEEKKKKEG 981
++ + R R ++ E +E K KK +
Sbjct: 465 AKKYVKPSRHRFVPFEKAVIMEADSANRSSAPRKKELVEQWPEYSDEDKIRSLLKKLRAI 524
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+ KE + EE E + K E EEE E +E E+
Sbjct: 525 EALKERMRSGEELEVIQVNKIE-TEEEVLSELKELVED 561
>gnl|CDD|202558 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. This family
aligns residues towards the N-terminus of several
proteins with multiple functions. The members of this
family all appear to possess 5'-3' exonuclease activity
EC:3.1.11.-. Thus, the aligned region may be necessary
for 5' to 3' exonuclease function. The family also
contains several Xrn1 and Xrn2 proteins. The 5'-3'
exoribonucleases Xrn1p and Xrn2p/Rat1p function in the
degradation and processing of several classes of RNA in
Saccharomyces cerevisiae. Xrn1p is the main enzyme
catalyzing cytoplasmic mRNA degradation in multiple
decay pathways, whereas Xrn2p/Rat1p functions in the
processing of rRNAs and small nucleolar RNAs (snoRNAs)
in the nucleus.
Length = 237
Score = 32.7 bits (75), Expect = 0.85
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEK 988
R RR R+ K+ +E+E + EE ++E E + K + ++EK
Sbjct: 97 RSRRFRAAKDAKEKEAEAEENREELETEGIKLPEKVEKEK 136
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 32.8 bits (75), Expect = 0.85
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 5/59 (8%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKE-----EKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+K EK KE E E+K E + K+E + +E+
Sbjct: 189 NSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAAAAEAAKQEAAAKAAAQEQAAL 247
Score = 31.2 bits (71), Expect = 2.1
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 12/78 (15%)
Query: 957 KEEEEEEKKKEEKKKEEEEK-----KKKEGKTKKEEKKKEEEEE-------KKKKKKEEE 1004
KE+++ ++K+ +++ E + E + +K E+ K+ E+
Sbjct: 154 KEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEK 213
Query: 1005 KEEEEKKEEEEKEEEEKK 1022
EE+K E E
Sbjct: 214 AALEEQKALAEAAAAEAA 231
Score = 31.2 bits (71), Expect = 2.2
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKK-KEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E E + ++ EK +E E+ +++K E E ++E +
Sbjct: 180 ELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEEQKALAEAAAAEAAKQEAAAKA 239
Query: 1020 EKK 1022
+
Sbjct: 240 AAQ 242
>gnl|CDD|225058 COG2147, RPL19A, Ribosomal protein L19E [Translation, ribosomal
structure and biogenesis].
Length = 150
Score = 31.9 bits (73), Expect = 0.87
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
K KK GR R+R ++++ RRR R+ + R + R +R R RR R+ R
Sbjct: 53 KPKKGISRGRARKRHAQKKKGRRRGPGSRKGTKGARMPSKERWIKRIRALRRELRKLRD 111
>gnl|CDD|218693 pfam05687, DUF822, Plant protein of unknown function (DUF822).
This family consists of the N terminal regions of
several plant proteins of unknown function.
Length = 151
Score = 31.7 bits (72), Expect = 0.87
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 896 GGGRRRRRRKKRRRSRRRRSRRR 918
GG R+ K+R ++RR RRR
Sbjct: 1 GGSGRKPTWKERENNKRRERRRR 23
Score = 31.3 bits (71), Expect = 1.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 915 SRRRRRRRRRRRRRRRRRRRR 935
S R+ + R +RR RRRR
Sbjct: 3 SGRKPTWKERENNKRRERRRR 23
Score = 30.9 bits (70), Expect = 1.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 910 SRRRRSRRRRRRRRRRRRRRR 930
S R+ + + R +RR RRRR
Sbjct: 3 SGRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 917 RRRRRRRRRRRRRRRRRRRR 936
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 918 RRRRRRRRRRRRRRRRRRRR 937
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 919 RRRRRRRRRRRRRRRRRRRR 938
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 920 RRRRRRRRRRRRRRRRRRRR 939
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 921 RRRRRRRRRRRRRRRRRRRR 940
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 922 RRRRRRRRRRRRRRRRRRRR 941
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 923 RRRRRRRRRRRRRRRRRRRR 942
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 924 RRRRRRRRRRRRRRRRRRRR 943
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 925 RRRRRRRRRRRRRRRRRRRR 944
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 926 RRRRRRRRRRRRRRRRRRRR 945
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 927 RRRRRRRRRRRRRRRRRRRR 946
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 928 RRRRRRRRRRRRRRRRRRRR 947
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 929 RRRRRRRRRRRRRRRRRRRR 948
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 930 RRRRRRRRRRRRRRRRRRRR 949
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 931 RRRRRRRRRRRRRRRRRRRR 950
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 932 RRRRRRRRRRRRRRRRRRRR 951
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 933 RRRRRRRRRRRRRRRRRRRR 952
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 934 RRRRRRRRRRRRRRRRRRRR 953
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 935 RRRRRRRRRRRRRRRRRRRR 954
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 30.1 bits (68), Expect = 3.1
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRRR 923
GG GR+ ++ R ++RR RRRR
Sbjct: 1 GGSGRKPTWKE------RENNKRRERRRR 23
Score = 29.4 bits (66), Expect = 6.1
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 913 RRSRRRRRRRRRRRRRRRRR 932
R + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 29.4 bits (66), Expect = 6.2
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 908 RRSRRRRSRRRRRRRRRRRR 927
R + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
Score = 29.0 bits (65), Expect = 8.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 912 RRRSRRRRRRRRRRRRRRRR 931
R+ + R +RR RRRR
Sbjct: 4 GRKPTWKERENNKRRERRRR 23
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 33.4 bits (77), Expect = 0.87
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 959 EEEEEKKKEE----KKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+E+E+ KE K E K + + +E +KE E KKK E + + E
Sbjct: 711 QEQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAE 770
Query: 1015 E 1015
E
Sbjct: 771 E 771
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 32.8 bits (75), Expect = 0.89
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
+ +E +E+ + ++KE++KEE + KEE++++ E +KR
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKR 378
Score = 32.8 bits (75), Expect = 1.2
Identities = 13/54 (24%), Positives = 30/54 (55%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
++ E+K + ++KE K ++ + K+E++E+ + +K+ +E EE K
Sbjct: 334 FSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELK 387
Score = 32.4 bits (74), Expect = 1.2
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+ ++ + ++K + +++ K K+E K KEE++E + +K ++ EE KE
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKE 388
Score = 32.4 bits (74), Expect = 1.2
Identities = 16/58 (27%), Positives = 36/58 (62%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
+ +E + ++K + ++K+K++EE K K++K+E+ E E++ +E +E +EK
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEK 389
Score = 31.3 bits (71), Expect = 3.3
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
R S +E + ++K + ++++KKKE KEEK+++ E EK+ K+ EE +E
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKE 388
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 32.7 bits (75), Expect = 0.91
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 2/75 (2%)
Query: 957 KEEEEEEKKKEEKK--KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
KEE+ ++ KK+ K K E KK K KKKK+++K+ KK +
Sbjct: 213 KEEDPDKYKKQFSKYIKAGVGPDSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKT 272
Query: 1015 EKEEEEKKRRRIRRK 1029
+K ++++ R++ K
Sbjct: 273 KKLTGKQRKARVKAK 287
>gnl|CDD|100810 PRK01194, PRK01194, V-type ATP synthase subunit E; Provisional.
Length = 185
Score = 32.2 bits (73), Expect = 0.92
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
K+ + +EEKKKE +E K+ ++ EKE + K + ++ E+K R I R
Sbjct: 8 KDIEKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISR 57
Score = 29.1 bits (65), Expect = 9.3
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 958 EEEEEEKKKE--EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E+ EEKKKE ++ + EK +KE +K + K+ E++ + + +K +K E
Sbjct: 11 EKSREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEA 70
Query: 1016 KEEEEKKRRRI 1026
+ + +KRR I
Sbjct: 71 RSIKREKRREI 81
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which is
functionally uncharacterized. This family of proteins is
found in bacteria and viruses. Proteins in this family
are typically between 137 and 257 amino acids in length.
There are two completely conserved residues (D and L)
that may be functionally important.
Length = 136
Score = 31.6 bits (72), Expect = 0.92
Identities = 12/60 (20%), Positives = 28/60 (46%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+E+ K K + +EEK + +E K ++EE ++ +++ ++ +K E
Sbjct: 68 DEDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPV 127
Score = 30.8 bits (70), Expect = 1.5
Identities = 11/57 (19%), Positives = 27/57 (47%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
E+ K + + E +EE+ E +K+ + ++EE +K ++ ++ +K
Sbjct: 69 EDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 30.4 bits (69), Expect = 1.8
Identities = 7/57 (12%), Positives = 24/57 (42%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+ + E ++E ++E K ++E+ +K ++ K+ ++ + +
Sbjct: 72 IKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQ 128
Score = 29.7 bits (67), Expect = 3.2
Identities = 9/56 (16%), Positives = 27/56 (48%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+E + + + EEE+ + +K+ + ++EE ++ +++ ++ KK
Sbjct: 68 DEDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKK 123
Score = 29.7 bits (67), Expect = 3.4
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 980 EGKTKKEEKKKEEEEEKKKKKK--EEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ K K + EEEK E K+ + ++EE ++ + R K+
Sbjct: 68 DEDDIKVGKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKK 120
Score = 29.3 bits (66), Expect = 5.0
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
+EE+ E +K+ K ++EE +K + ++KK +K + + +
Sbjct: 92 EEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQGQ 130
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 32.5 bits (74), Expect = 0.92
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 960 EEEEKKKE-----EKKKEEEEKKKKEGKTKKEEKKKEE--EEEKKKKKKEEEKEEEEKKE 1012
EEE +K + ++K EE +K+ +GKT K K E E E KK++ E+ K E KK+
Sbjct: 11 EEELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKK 70
Query: 1013 EEEKEEEEKKRRRIRRK 1029
++ K+E+ R ++ +K
Sbjct: 71 KKFKKEKVDVRVKVVKK 87
Score = 30.6 bits (69), Expect = 4.4
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 972 EEEEKKKK---EGKTKKEEKKKEEEEEKKKKK--KEEEKEEEEKKE---EEEKEEEEKKR 1023
EEE +K + E K K EE +K+ + K K+ K EK E E K+ E+ K E KK+
Sbjct: 11 EEELRKAQSLEELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKK 70
Query: 1024 RRIRRKR 1030
++ ++++
Sbjct: 71 KKFKKEK 77
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes the
bacterial secreted proteins PopB, PepB, YopB and EspD
which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 32.8 bits (75), Expect = 0.92
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
K EK+ + K ++ + +++++K+ EE +++ KK EK EE KK
Sbjct: 11 KLAEKQAK---SKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKK 54
Score = 31.7 bits (72), Expect = 1.8
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+ + + K ++ E + K++K+ E+ +E+ K+ EK EE KK
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKK 54
>gnl|CDD|176473 cd06444, DNA_pol_A, Family A polymerase primarily fills DNA gaps
that arise during DNA repair, recombination and
replication. DNA polymerase family A, 5'-3' polymerase
domain. Family A polymerase functions primarily to fill
DNA gaps that arise during DNA repair, recombination and
replication. DNA-dependent DNA polymerases can be
classified into six main groups based upon phylogenetic
relationships with E. coli polymerase I (classA), E.
coli polymerase II (class B), E.coli polymerase III
(class C), euryarchaeota polymerase II (class D), human
polymerase beta (class X), E. coli UmuC/DinB and
eukaryotic RAP 30/Xeroderma pigmentosum variant (class
Y). Family A polymerases are found primarily in
organisms related to prokaryotes and include prokaryotic
DNA polymerase I, mitochondrial polymerase gamma, and
several bacteriophage polymerases including those from
odd-numbered phage (T3, T5, and T7). Prokaryotic
polymerase I (pol I) has two functional domains located
on the same polypeptide; a 5'-3' polymerase and a 5'-3'
exonuclease. Pol I uses its 5' nuclease activity to
remove the ribonucleotide portion of newly synthesized
Okazaki fragments and the DNA polymerase activity to
fill in the resulting gap. The structure of these
polymerases resembles in overall morphology a cupped
human right hand, with fingers (which bind an incoming
nucleotide and interact with the single-stranded
template), palm (which harbors the catalytic amino acid
residues and also binds an incoming dNTP) and thumb
(which binds double-stranded DNA) subdomains.
Length = 347
Score = 32.8 bits (75), Expect = 0.93
Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 6/77 (7%)
Query: 863 EKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGG------GRRRRRRKKRRRSRRRRSR 916
++ R + E+ ++ E GG GRR R
Sbjct: 187 KEAAALIELFFSRFPAFPKAMEYVEDAARRGERGGYVRTLLGRRSPPPDIRWTEVVSDPA 246
Query: 917 RRRRRRRRRRRRRRRRR 933
R RR RR R R
Sbjct: 247 AASRARRVRRAAGRFAR 263
>gnl|CDD|148511 pfam06936, Selenoprotein_S, Selenoprotein S (SelS). This family
consists of several mammalian selenoprotein S (SelS)
sequences. SelS is a plasma membrane protein and is
present in a variety of tissues and cell types. The
function of this family is unknown.
Length = 190
Score = 32.2 bits (73), Expect = 0.93
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
R R R ++R S KE + K +++E E + +E+ + + K+K+K+ E
Sbjct: 55 RPRWRSLQKRSSEKEITVFDPDKVVRRQEALEAARLR---MQEDLDAKAAKFKEKQKQLE 111
Query: 1004 EKEEEEKKEEEEKEEEEKKRRRIRRK 1029
E++ +K E ++ +E K + +
Sbjct: 112 EEKRRQKIEMWDRMQEGKSYKVSAKL 137
Score = 31.8 bits (72), Expect = 1.1
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R R R ++R + + RR+ R R + + K KE++K+ EEEK
Sbjct: 55 RPRWRSLQKRSSEKEITVFDPDKVVRRQEALEAARLRMQEDLDAKAAKFKEKQKQLEEEK 114
Query: 977 KK---------KEGKTKKEEKKKEEE 993
++ +EGK+ K K +E
Sbjct: 115 RRQKIEMWDRMQEGKSYKVSAKLAQE 140
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 32.9 bits (76), Expect = 0.98
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK------KEEKKKEEEEKKKKEGKTKKE 986
R+ ++ R+R+ +++ + K E +K KEE EE K K ++E
Sbjct: 453 RKLKKYLSRKRKEEEAKKKAKTFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLEEE 512
Query: 987 EKKKEEEEEKKKKKKEEEKEEEE 1009
E ++EEEEE + + E++
Sbjct: 513 EVEEEEEEEAVVVESAKNYTEKD 535
Score = 31.4 bits (72), Expect = 2.6
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEK--KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK---- 1001
R+ ++ S K +EEE KKK + K E +K +KEE EE K KK
Sbjct: 453 RKLKKYLSRKRKEEEAKKKAKTFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLEEE 512
Query: 1002 EEEKEEEEKKEEEEKEEEEKK 1022
E E+EEEE+ E + +
Sbjct: 513 EVEEEEEEEAVVVESAKNYTE 533
>gnl|CDD|221673 pfam12626, PolyA_pol_arg_C, Polymerase A arginine-rich C-terminus.
The C-terminus of polymerase A in E coli is
arginine-rich and is necessary for full functioning of
the enzyme.
Length = 123
Score = 31.0 bits (71), Expect = 1.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 938 RRRRRRRRRRRRRRRRRS 955
+ R +RRRRR RRR+
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.6 bits (70), Expect = 1.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRR 936
RR + R +RRRRR RRR++
Sbjct: 98 RRAMIEALQGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 920 RRRRRRRRRRRRRRRRRR 937
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 921 RRRRRRRRRRRRRRRRRR 938
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 922 RRRRRRRRRRRRRRRRRR 939
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 923 RRRRRRRRRRRRRRRRRR 940
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 924 RRRRRRRRRRRRRRRRRR 941
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 925 RRRRRRRRRRRRRRRRRR 942
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 926 RRRRRRRRRRRRRRRRRR 943
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 927 RRRRRRRRRRRRRRRRRR 944
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 928 RRRRRRRRRRRRRRRRRR 945
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 929 RRRRRRRRRRRRRRRRRR 946
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 930 RRRRRRRRRRRRRRRRRR 947
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 931 RRRRRRRRRRRRRRRRRR 948
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 932 RRRRRRRRRRRRRRRRRR 949
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 933 RRRRRRRRRRRRRRRRRR 950
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 934 RRRRRRRRRRRRRRRRRR 951
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 935 RRRRRRRRRRRRRRRRRR 952
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 936 RRRRRRRRRRRRRRRRRR 953
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 937 RRRRRRRRRRRRRRRRRR 954
+ R +RRRRR RRR++
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 30.2 bits (69), Expect = 2.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRR 926
RR + + R RRRRR RRR++
Sbjct: 98 RRAMIEALQGREGGKRRRRRPRRRKK 123
Score = 29.5 bits (67), Expect = 3.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 887 EEEKKKKEGGGGRRRRRRKKRRRSRRRRS 915
EE+++ R +++RRR RRR+
Sbjct: 95 EEQRRAMIEALQGREGGKRRRRRPRRRKK 123
Score = 29.5 bits (67), Expect = 4.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 939 RRRRRRRRRRRRRRRRSG 956
+ R +RRRRR RRR
Sbjct: 106 QGREGGKRRRRRPRRRKK 123
Score = 28.3 bits (64), Expect = 8.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRR 927
RR R +RRRRR RRR++
Sbjct: 98 RRAMIEALQGREGGKRRRRRPRRRKK 123
>gnl|CDD|238268 cd00481, Ribosomal_L19e, Ribosomal protein L19e. L19e is found in
the large ribosomal subunit of eukaryotes and archaea.
L19e is distinct from the ribosomal subunit L19, which
is found in prokaryotes. It consists of two small
globular domains connected by an extended segment. It is
located toward the surface of the large subunit, with
one exposed end involved in forming the intersubunit
bridge with the small subunit. The other exposed end is
involved in forming the translocon binding site, along
with L22, L23, L24, L29, and L31e subunits.
Length = 145
Score = 31.4 bits (72), Expect = 1.0
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
K KK GR R+R + RR+ R R R+ + R + RR R RR ++ R
Sbjct: 50 KPKKGHSRGRARKRHEARRKGRHRGPGSRKGTKGARMPSKELWIRRIRALRRLLKKLRD 108
Score = 30.3 bits (69), Expect = 2.2
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
KK K+G R R+R + RR R R R+ + R + RR R RR ++ R
Sbjct: 49 KKPKKGHSRGRARKRHEARRKGRHRGPGSRKGTKGARMPSKELWIRRIRALRRLLKKLRD 108
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit protein
2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other subunits
forms THO.
Length = 296
Score = 32.3 bits (74), Expect = 1.1
Identities = 15/60 (25%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE--EKKRRRIRRKR 1030
++E ++ E + K+ + ++KKK+KK + ++ +EE +K E EK ++R+ ++
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEK 89
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 30.9 bits (70), Expect = 1.1
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEE-KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+R ++ E ++ EK+K ++ K++KE + K + + E E K+ +K E+ E E+
Sbjct: 42 KRGLVLNQKPELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKA 101
Query: 1011 KEEEEKE 1017
KE+EE+E
Sbjct: 102 KEDEEQE 108
>gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional.
Length = 292
Score = 32.5 bits (75), Expect = 1.1
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
K E K EE EE+++ ++E E++ EE KEE + EE K +R R
Sbjct: 35 KPPELKAEEIEERREVREEAEEKYEEAKEEGDLEEARKYAQRSSR 79
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 32.7 bits (74), Expect = 1.1
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
E +EE ++ EE KKE EK EG EEK K +EE K
Sbjct: 241 AEEEEFELDEEHEEAEEDKKEALEKIGAEG---DEEKFKFDEEIK 282
Score = 32.0 bits (72), Expect = 2.3
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
K +K EEEE + E + EE KKE E K E ++E+ + EE + E + K
Sbjct: 234 KNDGDKVAEEEEFELDEEHEEAEEDKKEALE---KIGAEGDEEKFKFDEEIKFIEHDVKD 290
Query: 1024 RRIR 1027
R I
Sbjct: 291 RNIA 294
Score = 31.6 bits (71), Expect = 2.5
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
K + ++ ++EE + +EE ++ +E K + EK E +E+K K EE K
Sbjct: 234 KNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIK 282
Score = 31.2 bits (70), Expect = 3.3
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEE----KKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
EK +EE + K +G EE++ E +EE ++ KK+ EK E EE+ K +EE K
Sbjct: 224 EKLEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIK 282
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 32.3 bits (74), Expect = 1.1
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 17/84 (20%)
Query: 964 KKKEEKKKEEEEKK----KKEGKTKKEEKKKEEEEEKK---------KKKKEEEKEEEEK 1010
+ KK EE +K KK GK + EK +E +EKK KKK++ +E +
Sbjct: 126 AEAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKGGGDEGDL 185
Query: 1011 ----KEEEEKEEEEKKRRRIRRKR 1030
++ K +KK R+ R
Sbjct: 186 FDFLVDDAAKGGSKKKGRKGGAAR 209
Score = 30.8 bits (70), Expect = 3.2
Identities = 36/186 (19%), Positives = 68/186 (36%), Gaps = 45/186 (24%)
Query: 771 EHMKKIRTDLDNGFVPLTLLEITKQLTKAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEK 830
EHM+K+R L + + K RK++E K
Sbjct: 115 EHMQKVRKKL-----------LAEAAAKK-------------------ASEEARKQRELK 144
Query: 831 KKWKR--RGGGRRRRRGKKE-EEK----KKKKEEEEEGGEK---EEEEGGGGGGRRRRRR 880
K K+ + R + KK+ EK KKK++ + G+ ++ GG +++ R+
Sbjct: 145 KFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKGGGDEGDLFDFLVDDAAKGGSKKKGRK 204
Query: 881 RRSGKEEEEKK-----KKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
+ + + K K G GG++R + S S ++ + + +R
Sbjct: 205 GGAARGKPNAKRKAKDAKFGFGGKKRGSKSNTAESSNDLSGFSVKKMKGGGGAGKGGNKR 264
Query: 936 RRRRRR 941
+ RR
Sbjct: 265 PGKSRR 270
>gnl|CDD|220815 pfam10577, UPF0560, Uncharacterized protein family UPF0560. This
family of proteins has no known function.
Length = 805
Score = 32.9 bits (75), Expect = 1.1
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK 969
S+ + R R R RRRR RR G ++ E+KK +
Sbjct: 736 SKVSGEQAPTVEESRGRSSTDSSREPLSSPRRRRGRRPEDELDDDDG-DDAGEDKKSPWQ 794
Query: 970 KKEE 973
K+EE
Sbjct: 795 KREE 798
Score = 32.1 bits (73), Expect = 1.9
Identities = 15/54 (27%), Positives = 18/54 (33%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEE 974
R R R RRRR RR ++ E KK +K EE
Sbjct: 745 TVEESRGRSSTDSSREPLSSPRRRRGRRPEDELDDDDGDDAGEDKKSPWQKREE 798
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated. Members
of this family contain a region found exclusively in
eukaryotic sodium channels or their subunits, many of
which are voltage-gated. Members very often also contain
between one and four copies of pfam00520 and, less often,
one copy of pfam00612.
Length = 230
Score = 32.0 bits (73), Expect = 1.1
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+E+ + KEE KK +T K E+K E E +EEEE+ EEE+E
Sbjct: 118 NDEDTSSESSYGFKEES--KKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEE 175
Query: 1018 EEE 1020
+E
Sbjct: 176 VKE 178
Score = 30.8 bits (70), Expect = 3.1
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
G +EE ++ E K EE++ EG T E +EEEEE +EEEE KE E+
Sbjct: 129 GFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEE-------IAEEEEEVKEPED 181
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists of
several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 33.0 bits (75), Expect = 1.1
Identities = 18/77 (23%), Positives = 32/77 (41%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
++ K + E ++K E E++ + K EE EKK + + E
Sbjct: 74 ENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAAEA 133
Query: 1006 EEEEKKEEEEKEEEEKK 1022
EEE K +++ + E K
Sbjct: 134 EEEAKLLKDKLDAESLK 150
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 32.8 bits (75), Expect = 1.1
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 973 EEEKKKKEGKTKKEEKK-------KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
E K+K K K+ E+ E E+ ++ +EE+E+EE++EEE+++E K
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEH 412
>gnl|CDD|225382 COG2826, Tra8, Transposase and inactivated derivatives, IS30 family
[DNA replication, recombination, and repair].
Length = 318
Score = 32.4 bits (74), Expect = 1.1
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE 968
R SR +R R R + + R R RRRR R+ + R E+ + K E
Sbjct: 35 RHHSTISRELKRNRTRDIYSAVKAQERYRMLRRRRIRKLKLNPELRELVLEKLKSKWSPE 94
Score = 30.4 bits (69), Expect = 4.4
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEE 973
R +R R R + + R R RRRR R+ + E EK K + E+
Sbjct: 42 RELKRNRTRDIYSAVKAQERYRMLRRRRIRKLKLNPELRELVLEKLKSKWSPEQ 95
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 32.6 bits (75), Expect = 1.1
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
RR+ R E EE + E + +E + + E+ E +E K+K KE E
Sbjct: 36 EERRKLLR-----ELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAA 90
Query: 1007 EEEKKEE 1013
+E + E
Sbjct: 91 LDELEAE 97
Score = 32.2 bits (74), Expect = 1.6
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
RR+ R + R S +E + ++ +++ E+ E K KE+ K+ E
Sbjct: 36 EERRKLLRELEELQAERNELS-----KEIGRALKRGEDDAEELIAEVKELKEKLKELEAA 90
Query: 995 EKKKKKK 1001
+ + +
Sbjct: 91 LDELEAE 97
Score = 31.4 bits (72), Expect = 3.0
Identities = 15/83 (18%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 946 RRRRRRRRRSGKEEEE----EEKKKEEKKKEEE---EKKKKEGKTKKEEKKKEEEEEKKK 998
R + ++R + ++ +E++++ ++ EE E+ + + + K+ E++ E+
Sbjct: 15 REKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELI 74
Query: 999 KKKEEEKEEEEKKEEEEKEEEEK 1021
+ +E KE+ ++ E E E +
Sbjct: 75 AEVKELKEKLKELEAALDELEAE 97
>gnl|CDD|146077 pfam03263, Cucumo_2B, Cucumovirus protein 2B. This protein may be
a viral movement protein.
Length = 103
Score = 30.7 bits (69), Expect = 1.1
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 6/38 (15%)
Query: 888 EEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRR 925
EKK+ +RRR +K RR R +S R R R
Sbjct: 15 VEKKR------QRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 2.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
R +++R RRR R+ RR R + R R R
Sbjct: 13 RLVEKKRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 2.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
+R RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
+R+RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
+R+RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
+R+RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
+R+RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
+R+RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
+R+RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
+R+RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
+R+RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
+R+RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
+R+RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 29.5 bits (66), Expect = 3.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
+R+RRR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 28.0 bits (62), Expect = 9.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
+R+RR+ R++RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
Score = 28.0 bits (62), Expect = 9.8
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
+R+ RR R+ RR R + R R R
Sbjct: 18 KRQRRRSHRKNRRERGHKSPSERARSNLR 46
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This family
includes the vacuolar ATP synthase E subunit, as well as
the archaebacterial ATP synthase E subunit.
Length = 195
Score = 31.9 bits (73), Expect = 1.1
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
+E EEK +E + + EEE + ++ + +E +KK EE +KK+K+ E
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAE 48
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 32.6 bits (74), Expect = 1.2
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E E E +K+ E+ +EE E + + E EE + E E + ++
Sbjct: 326 EDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDD 378
Score = 31.1 bits (70), Expect = 2.9
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R KE + E+ + E +K+EG EE EE E+ E E +E
Sbjct: 310 RNGNRIKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESED------EVEIDESVI 363
Query: 1011 KEEEEKEEEEKK 1022
+E E E E +
Sbjct: 364 EEVAEMELLEVQ 375
>gnl|CDD|237045 PRK12296, obgE, GTPase CgtA; Reviewed.
Length = 500
Score = 32.5 bits (75), Expect = 1.2
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE 968
R R RR R RR R E E ++K
Sbjct: 459 RLEENDRPTAAERRAAYRERRDARDEARAELEAERKAG 496
Score = 32.1 bits (74), Expect = 1.5
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEE 968
R R RR R RR R + E E E+K
Sbjct: 459 RLEENDRPTAAERRAAYRERRDARDEARAELEAERKAGH 497
Score = 30.2 bits (69), Expect = 5.9
Identities = 10/37 (27%), Positives = 12/37 (32%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
R R + RR R RR R R R+
Sbjct: 459 RLEENDRPTAAERRAAYRERRDARDEARAELEAERKA 495
Score = 30.2 bits (69), Expect = 7.0
Identities = 12/36 (33%), Positives = 13/36 (36%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEK 964
R R RR R RR R + E E E K
Sbjct: 459 RLEENDRPTAAERRAAYRERRDARDEARAELEAERK 494
Score = 30.2 bits (69), Expect = 7.2
Identities = 11/45 (24%), Positives = 12/45 (26%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R R R RR R RR R R R+
Sbjct: 451 LGGRGTDARLEENDRPTAAERRAAYRERRDARDEARAELEAERKA 495
Score = 29.5 bits (67), Expect = 9.8
Identities = 11/38 (28%), Positives = 13/38 (34%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R R RR R RR R R R++G
Sbjct: 459 RLEENDRPTAAERRAAYRERRDARDEARAELEAERKAG 496
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 32.7 bits (74), Expect = 1.2
Identities = 33/187 (17%), Positives = 65/187 (34%), Gaps = 4/187 (2%)
Query: 836 RGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEG 895
+ G + + E+ K+ E +E G E +EG G + + K KK E
Sbjct: 522 KAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEF 581
Query: 896 GGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
+ + + ++ +R R +R R + + + +R + +R
Sbjct: 582 ----PKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPP 637
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+ ++ E K + K K K + K KE+ + + KE + +E
Sbjct: 638 PPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDE 697
Query: 1016 KEEEEKK 1022
E K
Sbjct: 698 SFESILK 704
>gnl|CDD|221216 pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein
present in Mycobacterium and related actinomycetes. It
is a functional homologue of the H-NS-like proteins.
H-NS proteins play a role in nucleoid organisation and
also function as a pleiotropic regulator of gene
expression.
Length = 107
Score = 30.6 bits (70), Expect = 1.2
Identities = 14/35 (40%), Positives = 16/35 (45%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
RR RR RRR R RR R R R +G +
Sbjct: 55 RRVGRRGRRRTRSRRAADREDSAAIREWARENGYQ 89
Score = 30.2 bits (69), Expect = 1.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEE 962
RR RR RRR R RR + +E+
Sbjct: 55 RRVGRRGRRRTRSRRAADREDSAA 78
Score = 29.5 bits (67), Expect = 2.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRR 934
RR RR RRR R RR R
Sbjct: 55 RRVGRRGRRRTRSRRAADREDSA 77
Score = 29.5 bits (67), Expect = 2.7
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRR 938
+RR RR RRR R RR R
Sbjct: 52 EAARRVGRRGRRRTRSRRAADREDSA 77
Score = 29.1 bits (66), Expect = 3.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRR 939
RR RR RRR R RR R
Sbjct: 55 RRVGRRGRRRTRSRRAADREDSA 77
Score = 29.1 bits (66), Expect = 3.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRR 940
RR RR RRR R RR R
Sbjct: 55 RRVGRRGRRRTRSRRAADREDSA 77
Score = 29.1 bits (66), Expect = 3.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRR 941
RR RR RRR R RR R
Sbjct: 55 RRVGRRGRRRTRSRRAADREDSA 77
Score = 29.1 bits (66), Expect = 3.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRR 942
RR RR RRR R RR R
Sbjct: 55 RRVGRRGRRRTRSRRAADREDSA 77
Score = 29.1 bits (66), Expect = 3.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRR 943
RR RR RRR R RR R
Sbjct: 55 RRVGRRGRRRTRSRRAADREDSA 77
Score = 29.1 bits (66), Expect = 3.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRR 944
RR RR RRR R RR R
Sbjct: 55 RRVGRRGRRRTRSRRAADREDSA 77
Score = 29.1 bits (66), Expect = 3.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRR 945
RR RR RRR R RR R
Sbjct: 55 RRVGRRGRRRTRSRRAADREDSA 77
Score = 28.7 bits (65), Expect = 5.8
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRR 925
RR RR RR RSRR R
Sbjct: 55 RRVGRRGRRRTRSRRAADREDSA 77
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes the
fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p
is localised exclusively to the nucleolus and binds near
or at the enhancer region of rRNA-encoding DNA repeating
units.
Length = 784
Score = 32.5 bits (74), Expect = 1.2
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
E K + ++ E EE E + EE +E+E + + E E E + + EE+++E++
Sbjct: 636 ENKSRHQQLFEGEE----EDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDA 691
Query: 1022 K 1022
+
Sbjct: 692 E 692
Score = 30.6 bits (69), Expect = 5.1
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKE---EEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
K +E K + + EG+ + E+ +E +E+E + + E + E + ++ EE E+E+
Sbjct: 633 KADENKSRHQ--QLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQED 689
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal
region/beta chain. The methionyl-tRNA synthetase (metG)
is a class I amino acyl-tRNA ligase. This model describes
a region of the methionyl-tRNA synthetase that is present
at the C-terminus of MetG in some species (E. coli, B.
subtilis, Thermotoga maritima, Methanobacterium
thermoautotrophicum), and as a separate beta chain in
Aquifex aeolicus. It is absent in a number of other
species (e.g. Mycoplasma genitalium, Mycobacterium
tuberculosis), while Pyrococcus horikoshii has both a
full length MetG and a second protein homologous to the
beta chain only. Proteins hit by This model should called
methionyl-tRNA synthetase beta chain if and only if the
model metG hits a separate protein not also hit by This
model [Protein synthesis, tRNA aminoacylation].
Length = 137
Score = 31.2 bits (71), Expect = 1.3
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
KK E+ K + +KK+KK E EK E +KE ++ EK R+
Sbjct: 2 KKIEELKLKGAKKKEKKDEGEKALEPQKETITIDDFEKVDLRV 44
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 32.8 bits (75), Expect = 1.3
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE-EKK 1022
K E K+E+ E++K+E K + KK ++K KK K + ++K + E K
Sbjct: 185 KSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLESK 244
Score = 32.1 bits (73), Expect = 1.9
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
+ EE ++E KK K+K++ K K K + +KK + E + E + +
Sbjct: 191 KEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLESKLEAQSK 250
Query: 1013 EEEKEEEEKKR 1023
E +++ K+
Sbjct: 251 ELWSLKDDLKK 261
Score = 30.5 bits (69), Expect = 5.2
Identities = 13/61 (21%), Positives = 32/61 (52%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
KK + KEE+ +++K+ K ++KK+ + K KK + +++ +K+ + +
Sbjct: 184 KKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLES 243
Query: 1024 R 1024
+
Sbjct: 244 K 244
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered lipoprotein.
This model represents a family of six predicted
lipoproteins from a region of about 20 tandemly arranged
genes in the Treponema denticola genome. Two other
neighboring genes share the lipoprotein signal peptide
region but do not show more extensive homology. The
function of this locus is unknown.
Length = 412
Score = 32.2 bits (73), Expect = 1.3
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKE----EEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
K+E K+ + + E +K EEK+ E E K E+ KE K + E
Sbjct: 22 KKEDKESGLREMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKGESD 81
Query: 1022 KRRR 1025
K
Sbjct: 82 KFVG 85
Score = 29.9 bits (67), Expect = 6.7
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
KKE++E +E + +K K +E+E E K E K E+ KE K
Sbjct: 22 KKEDKESGLREMRVEKFSKMEEKENEFLSK---PEYNTHVKSPEQIKELSNKISGVS 75
>gnl|CDD|180777 PRK06958, PRK06958, single-stranded DNA-binding protein;
Provisional.
Length = 182
Score = 31.7 bits (72), Expect = 1.4
Identities = 14/44 (31%), Positives = 15/44 (34%)
Query: 859 EEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRR 902
+EGG GGGGG R G GGG R
Sbjct: 122 DEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGGASRP 165
Score = 29.0 bits (65), Expect = 8.6
Identities = 13/44 (29%), Positives = 15/44 (34%)
Query: 858 EEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRR 901
+E G GGGG G R G+ GGG R
Sbjct: 122 DEGGYGGGGGGGGGGYGGESRSGGGGGRASGGGGGGAGGGASRP 165
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating
C4-dicarboxylate transport system [Signal transduction
mechanisms].
Length = 603
Score = 32.3 bits (74), Expect = 1.4
Identities = 15/53 (28%), Positives = 21/53 (39%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKK 970
RRRRR R R + R RR R R + + E E+++ E
Sbjct: 315 WLRRRRRARLRLAELQEARAELERRVEERTADLTRANARLQAEIAEREQAEAA 367
Score = 31.5 bits (72), Expect = 2.4
Identities = 17/60 (28%), Positives = 24/60 (40%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
RRRRR R R + R RR R R R E E E+ + ++ ++E
Sbjct: 315 WLRRRRRARLRLAELQEARAELERRVEERTADLTRANARLQAEIAEREQAEAALRRAQDE 374
Score = 31.5 bits (72), Expect = 2.5
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEE 974
RRRRR R R + R RR R R R + E E+ + ++ ++E
Sbjct: 315 WLRRRRRARLRLAELQEARAELERRVEERTADLTRANARLQAEIAEREQAEAALRRAQDE 374
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type N-terminus.
This is an N-terminal domain of DNA polymerase III polC
subunit A that is found only in Firmicutes. DNA
polymerase polC-type III enzyme functions as the
'replicase' in low G + C Gram-positive bacteria. Purine
asymmetry is a characteristic of organisms with a
heterodimeric DNA polymerase III alpha-subunit
constituted by polC which probably plays a direct role in
the maintenance of strand-biased gene distribution;
since, among prokaryotic genomes, the distribution of
genes on the leading and lagging strands of the
replication fork is known to be biased. The domain is
associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 31.5 bits (72), Expect = 1.4
Identities = 13/49 (26%), Positives = 32/49 (65%)
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E +E + E + ++ E++KEEEE K ++ E +++E +++++++E
Sbjct: 132 DVEVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 30.8 bits (70), Expect = 2.2
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
E EEE ++ E++KEEEE K ++ + +++E +KKKK++E
Sbjct: 138 DESSEEEIEEFEEQKEEEEAK----LAEEALEALKKKEAEKKKKEKE 180
Score = 30.4 bits (69), Expect = 3.1
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+E + EEE ++ E + ++EE K EE + KKKE EK+++EK
Sbjct: 136 DEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 32.6 bits (75), Expect = 1.4
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+ E + EE+ E ++ + + EE +KE E ++ K+ +K EE E
Sbjct: 198 KKLGFERLELEEEGTPSELIREIK--EELEEIEKERESLLEELKELAKKYLEELLALYEY 255
Query: 1017 EEEEKKR 1023
E E +R
Sbjct: 256 LEIELER 262
Score = 31.4 bits (72), Expect = 2.9
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ + E+KK+ K +E EE+ ++ E+E K+ ++E + E E KE E++
Sbjct: 63 RSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQE 122
Query: 1017 EEE 1019
E
Sbjct: 123 IER 125
Score = 30.3 bits (69), Expect = 6.2
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+E +E ++E KK E + +E T E ++ +EE ++ +K+ E EE K+ ++
Sbjct: 185 VLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKK 244
Query: 1016 KEEE 1019
EE
Sbjct: 245 YLEE 248
Score = 30.3 bits (69), Expect = 6.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
E K+E EE +K+ +E K+ ++ ++ E E E ++ E
Sbjct: 218 REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAE 264
Score = 29.9 bits (68), Expect = 7.8
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE-EKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+ +E K K K EE + +++ E+ EKE +E +EE + E E K +R
Sbjct: 67 PKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIER 125
>gnl|CDD|215009 smart01069, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding domain
of Cdc37.
Length = 93
Score = 30.1 bits (68), Expect = 1.4
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E+E E K+ +++ E EEE +KE+EE+E++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 28.9 bits (65), Expect = 3.9
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
++E E K+ +++ E +EE EK++EEE+++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 27.8 bits (62), Expect = 9.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
+ E + K+ +++ E EEE +K+ +EEE
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEE 91
>gnl|CDD|226077 COG3547, COG3547, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 303
Score = 32.2 bits (73), Expect = 1.4
Identities = 15/74 (20%), Positives = 20/74 (27%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
+R R KRRR R R R + R R R + +
Sbjct: 107 QRALRELKRRRRRLLRLRTQLDNRIRGLLEEFGLGDFPELRLLKELAEIVLYELDELARL 166
Query: 959 EEEEEKKKEEKKKE 972
EE E +
Sbjct: 167 LEEIAALDREIEAR 180
Score = 31.4 bits (71), Expect = 2.0
Identities = 17/116 (14%), Positives = 31/116 (26%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
+ R +R ++ K + + R R +RRRRR R R + R
Sbjct: 72 KARGKRAKTDKADALAIAVAALRPKLEPVSVPSEEQRALRELKRRRRRLLRLRTQLDNRI 131
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
R R + + E + +E ++
Sbjct: 132 RGLLEEFGLGDFPELRLLKELAEIVLYELDELARLLEEIAALDREIEARLGIGVVT 187
Score = 30.3 bits (68), Expect = 5.7
Identities = 20/100 (20%), Positives = 35/100 (35%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
+++ R + K ++ R + S +R+ R +RRRRR R R +
Sbjct: 70 KKKARGKRAKTDKADALAIAVAALRPKLEPVSVPSEEQRALRELKRRRRRLLRLRTQLDN 129
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
R R R + E + +E + EE
Sbjct: 130 RIRGLLEEFGLGDFPELRLLKELAEIVLYELDELARLLEE 169
Score = 30.3 bits (68), Expect = 5.8
Identities = 19/112 (16%), Positives = 33/112 (29%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
+ R +R K ++ R + +R R +RRRRR R R + +
Sbjct: 72 KARGKRAKTDKADALAIAVAALRPKLEPVSVPSEEQRALRELKRRRRRLLRLRTQLDNRI 131
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
E+ E K+ E + E+ E +
Sbjct: 132 RGLLEEFGLGDFPELRLLKELAEIVLYELDELARLLEEIAALDREIEARLGI 183
Score = 30.3 bits (68), Expect = 5.8
Identities = 15/125 (12%), Positives = 27/125 (21%), Gaps = 5/125 (4%)
Query: 831 KKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEK 890
KK R + + + + E EE+ +RRRRR + + +
Sbjct: 70 KKKARGKRAKTDKADALAIAVAALRPKLEPVSVPSEEQRALRELKRRRRRLLRLRTQLDN 129
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
+ + R + R R R
Sbjct: 130 RIRG-----LLEEFGLGDFPELRLLKELAEIVLYELDELARLLEEIAALDREIEARLGIG 184
Query: 951 RRRRS 955
Sbjct: 185 VVTDR 189
Score = 29.5 bits (66), Expect = 8.9
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 9/90 (10%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSR---------RRRRRRRRR 925
R R+ + G RR + + R R +R+
Sbjct: 209 GRFPSARQLAAYLGLAPRPIQSGRSVVRRGLSKAGNAALRRALYLLALTAIRLNEAGKRK 268
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R+ + R+ R R+ R+ R+
Sbjct: 269 YYARKAKLRKLARILARKLAVALARKLARN 298
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 29.9 bits (68), Expect = 1.4
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 983 TKKEEKKKEE---EEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
+++E K KE E K +++EEKE ++K +E ++KK+R+ ++KR
Sbjct: 10 SEEEVKLKERIWDELNKDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKR 60
Score = 29.5 bits (67), Expect = 2.5
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
EE+E+K+ ++K +E K+ K +K +KK++E
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEA 63
>gnl|CDD|216205 pfam00937, Corona_nucleoca, Coronavirus nucleocapsid protein.
Length = 346
Score = 32.0 bits (73), Expect = 1.4
Identities = 21/85 (24%), Positives = 27/85 (31%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKE 980
R R R R R R R R R R S ++ K ++K
Sbjct: 152 FRGRSRSSSRSSSRSNSRGPSRGSSRNNSRNRNSSSPDDLVAAVLAALAKLGFGKQKSSS 211
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEK 1005
K + KK E KK+ K K
Sbjct: 212 KKPSRVTKKSAAEAAKKQLNKPRWK 236
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869). This
family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 32.6 bits (74), Expect = 1.4
Identities = 16/68 (23%), Positives = 41/68 (60%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
R E E + +++ E+E +K+++ + K +E EE+ ++ ++EE ++ +++E
Sbjct: 665 RAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEE 724
Query: 1013 EEEKEEEE 1020
++ K+E+E
Sbjct: 725 QKIKQEKE 732
>gnl|CDD|132514 TIGR03474, incFII_RepA, incFII family plasmid replication initiator
RepA. Members of this protein are the plasmid
replication initiator RepA of incFII (plasmid
incompatibility group F-II) plasmids. R1 and R100 are
plasmids in this group. Immediately upstream of repA is
found tap, a leader peptide of about 24 amino acids,
often not assigned as a gene in annotated plasmid
sequences. Note that other, non-homologous plasmid
replication proteins share the gene symbol (repA) and
similar names (plasmid replication protein RepA).
Length = 275
Score = 31.9 bits (72), Expect = 1.4
Identities = 25/100 (25%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Query: 878 RRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRR-RSRRRRRRRRRRRRRRRRRRRRR 936
RR R + ++ KK+ K R R R RS + R+ +R R RR R
Sbjct: 161 RRSRVEWENKQRKKQGLDTLEMDELIAKAWRFVRERFRSYQTERKSHGIKRARARRDADR 220
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEK 976
R+ +R+ R G+ E K E ++ +E+
Sbjct: 221 ERQDIETLVKRQLTREIAEGRFTGNREAVKREVERRVKER 260
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 32.5 bits (74), Expect = 1.4
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE+ +E ++ +EK + EE+++EEEEE EEE E E EE
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEE------EEEAAEAEAPMEEPVP 428
Score = 30.2 bits (68), Expect = 7.3
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
T E ++ +E+ ++ E+EEEE++EEEE+ E +
Sbjct: 381 TTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAE 420
Score = 30.2 bits (68), Expect = 7.5
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+E+ +E ++ + K ++ EEEE EEE+EEEE+ E E EE
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEE------EEEEEEEEEAAEAEAPMEEPV 427
>gnl|CDD|236544 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase;
Reviewed.
Length = 830
Score = 32.4 bits (74), Expect = 1.5
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK 990
R+ + R +++ RRR ++ ++ E+ EE +K +GK +K K+
Sbjct: 11 RKGKPSRPVKQKVSRRRYRDDDDYDDYDDYED---EEPMPRKGKGKGRKPRGKR 61
Score = 30.1 bits (68), Expect = 8.0
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
R+ + R +++ RRR R E+EE +K + K + K+
Sbjct: 11 RKGKPSRPVKQKVSRRRYRDDDDYDDYDDYEDEEPMPRKGKGKGRKPRGKRG 62
>gnl|CDD|240364 PTZ00332, PTZ00332, paraflagellar rod protein; Provisional.
Length = 589
Score = 32.2 bits (73), Expect = 1.5
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEK-KKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E+ E K+ KE+ E+ +E + ++EE K ++ E++ ++ E+ EE K+ EE +
Sbjct: 293 EDAEAMKRYATNKEKSERFIRENEDRQEEAWNKIQDLERQLQRLGTERFEEVKRRIEEND 352
Query: 1018 EEEKKR 1023
EEK+R
Sbjct: 353 REEKRR 358
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family. It
is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are multi-domain
proteins that act as scaffolding proteins and transducers
of a variety of signaling pathways that link membrane
dynamics and the underlying actin cytoskeleton. Most
members contain an N-terminal IMD, an SH3 domain, and a
WASP homology 2 (WH2) actin-binding motif at the
C-terminus, exccept for MIM which does not carry an SH3
domain. Some members contain additional domains and
motifs. The IMD domain binds and bundles actin filaments,
binds membranes and produces membrane protrusions, and
interacts with the small GTPase Rac.
Length = 223
Score = 31.6 bits (72), Expect = 1.5
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 962 EEKKKEEKK--KEEEEKKKKEGKTKKEEKKKEEEEEKK--KKKKEEEKEEEEKKEEEEKE 1017
E+K + ++K + E+ KKE K K+E+ K E KK KK ++ + ++K ++ E
Sbjct: 100 EKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALE 159
Query: 1018 EEEKKRRRI 1026
E K++ +
Sbjct: 160 ELNDKQKEL 168
Score = 31.2 bits (71), Expect = 2.4
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K++ E+ K + K+ ++K +K G K +EK + EE K+KE E + +
Sbjct: 122 KQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALL 181
Query: 1017 EEEEKKRRR 1025
EE RRR
Sbjct: 182 EE----RRR 186
Score = 30.4 bits (69), Expect = 4.2
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE---EKKEEEEKE 1017
E+ K+E K++ E+ K + KK +KK ++ K ++K ++ EE ++KE E
Sbjct: 113 FEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFV 172
Query: 1018 EEEKKRRRIRRKR 1030
+ + + +R
Sbjct: 173 SQGLRDALLEERR 185
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like protein.
This domain family is found in eukaryotes, and is
typically between 212 and 238 amino acids in length. The
family is found in association with pfam01805. There are
two completely conserved residues (W and H) that may be
functionally important. PRP21 is required for assembly of
the prespliceosome and it interacts with U2 snRNP and/or
pre-mRNA in the prespliceosome. This family also contains
proteins similar to PRP21, such as the mammalian SF3a.
SF3a also interacts with U2 snRNP from the
prespliceosome, converting it to its active form.
Length = 230
Score = 31.6 bits (72), Expect = 1.5
Identities = 19/71 (26%), Positives = 35/71 (49%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E + E+K K EE ++EE ++EEE+ ++KK+E K+ +E +
Sbjct: 82 NELIYRSLEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIPA 141
Query: 1019 EEKKRRRIRRK 1029
+ R +IR+
Sbjct: 142 AGESRLKIRKD 152
Score = 30.9 bits (70), Expect = 3.0
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+EEE EE++++ ++++EE KK KE K E + K +K+ + + E+ K
Sbjct: 107 EEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIPAAGESRLKIRKDYVPSGNKPRAEKPK 166
Query: 1017 EEEEK 1021
++ K
Sbjct: 167 KKMIK 171
>gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family
is one of a number of homologous small, well-conserved
GTP-binding proteins with pleiotropic effects. Bacterial
members are designated HflX, following the naming
convention in Escherichia coli where HflX is encoded
immediately downstream of the RNA chaperone Hfq, and
immediately upstream of HflKC, a membrane-associated
protease pair with an important housekeeping function.
Over large numbers of other bacterial genomes, the
pairing with hfq is more significant than with hflK and
hlfC. The gene from Homo sapiens in this family has been
named PGPL (pseudoautosomal GTP-binding protein-like)
[Unknown function, General].
Length = 351
Score = 32.1 bits (74), Expect = 1.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
RR R R + ++ + ++R R+RRRR+R+
Sbjct: 156 RRLIRERIAQLKKELEKVEKQRERQRRRRKRAD 188
Score = 31.3 bits (72), Expect = 2.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
RR R R + ++ + ++R R+RRRR+R
Sbjct: 156 RRLIRERIAQLKKELEKVEKQRERQRRRRKRAD 188
Score = 31.3 bits (72), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
RR R R + ++ + ++R R+RRRR+R
Sbjct: 156 RRLIRERIAQLKKELEKVEKQRERQRRRRKRAD 188
Score = 31.3 bits (72), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
RR R R + ++ + ++R R+RRRR+R
Sbjct: 156 RRLIRERIAQLKKELEKVEKQRERQRRRRKRAD 188
Score = 31.3 bits (72), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
RR R R + ++ + ++R R+RRRR+R
Sbjct: 156 RRLIRERIAQLKKELEKVEKQRERQRRRRKRAD 188
Score = 31.3 bits (72), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
RR R R + ++ + ++R R+RRRR+R
Sbjct: 156 RRLIRERIAQLKKELEKVEKQRERQRRRRKRAD 188
Score = 31.3 bits (72), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
RR R R + ++ + ++R R+RRRR+R
Sbjct: 156 RRLIRERIAQLKKELEKVEKQRERQRRRRKRAD 188
Score = 31.3 bits (72), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RR R R + ++ + ++R R+RRRR+R
Sbjct: 156 RRLIRERIAQLKKELEKVEKQRERQRRRRKRAD 188
Score = 31.3 bits (72), Expect = 2.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
RR R R + ++ + ++R R+RRRR+R
Sbjct: 156 RRLIRERIAQLKKELEKVEKQRERQRRRRKRAD 188
Score = 31.3 bits (72), Expect = 2.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
RR R R ++ ++ + ++R R+RRRR+R
Sbjct: 156 RRLIRERIAQLKKELEKVEKQRERQRRRRKRAD 188
Score = 30.5 bits (70), Expect = 4.9
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 895 GGGGRR----------RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
GG G R RR ++R ++ + ++R R+RRRR+R
Sbjct: 140 GGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRAD 188
>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus. This family contains the N
terminal region of several LUC7 protein homologues and
only contains eukaryotic proteins. LUC7 has been shown to
be a U1 snRNA associated protein with a role in splice
site recognition. The family also contains human and
mouse LUC7 like (LUC7L) proteins and human cisplatin
resistance-associated overexpressed protein (CROP).
Length = 252
Score = 32.0 bits (73), Expect = 1.5
Identities = 23/79 (29%), Positives = 37/79 (46%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE 991
R+ + ++R + + + S EE E ++ K E E +EGK + K +
Sbjct: 97 RKIDKAKQRLELTQEEQTKIAADSKAEELAELDEEIGKLLAEAEALGEEGKVDEAMKLMK 156
Query: 992 EEEEKKKKKKEEEKEEEEK 1010
E EE K KKKE E +E +
Sbjct: 157 EVEELKAKKKELEDSDEVR 175
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 30.0 bits (68), Expect = 1.5
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 808 TQIRLSRNRRGRRRRRRKKKEEKKK-WKRRGGGRRRRRGKK 847
+++R R R+++++KK ++K K W R + RRRGK+
Sbjct: 30 SKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
Score = 28.8 bits (65), Expect = 3.1
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 845 GKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEK------KKKEGGGG 898
E+ EE EE E+ + +R RR+++ K+ ++K +KKE
Sbjct: 7 SVPEQLPNGLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKE---- 62
Query: 899 RRRRRRKKRRRSRRRRSRRRRRR 921
+ RRR K+ + + R+RR R
Sbjct: 63 QMRRRGKEVKPDSKYTGRKRRPR 85
Score = 28.4 bits (64), Expect = 4.8
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 884 GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR- 942
G EE ++ E + RR +R R ++++ ++ +++ + R++ + RRR + +
Sbjct: 15 GLGEEGEEDDEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKEVKPD 74
Query: 943 -----RRRRRR 948
R+RR R
Sbjct: 75 SKYTGRKRRPR 85
>gnl|CDD|215416 PLN02779, PLN02779, haloacid dehalogenase-like hydrolase family
protein.
Length = 286
Score = 32.0 bits (73), Expect = 1.5
Identities = 12/31 (38%), Positives = 13/31 (41%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
+ S R R R RRRRRR R R
Sbjct: 1 AASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 31.6 bits (72), Expect = 2.0
Identities = 11/27 (40%), Positives = 11/27 (40%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRR 933
SR R RRRRRR R R
Sbjct: 5 SSARLASASRTRAGRRRRRRSRSTARV 31
Score = 31.6 bits (72), Expect = 2.1
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
S R R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 31.6 bits (72), Expect = 2.2
Identities = 13/27 (48%), Positives = 13/27 (48%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRR 935
S R S R R RRRRRR R R
Sbjct: 5 SSARLASASRTRAGRRRRRRSRSTARV 31
Score = 31.2 bits (71), Expect = 2.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
S R R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 31.2 bits (71), Expect = 2.8
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
S R R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 30.8 bits (70), Expect = 3.1
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRR 938
S R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 30.8 bits (70), Expect = 3.2
Identities = 12/32 (37%), Positives = 12/32 (37%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R R R RRRRRR R R S
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARVAS 33
Score = 30.4 bits (69), Expect = 4.3
Identities = 11/31 (35%), Positives = 11/31 (35%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARVA 32
Score = 30.4 bits (69), Expect = 4.4
Identities = 11/31 (35%), Positives = 12/31 (38%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
+ R R R RRRRRR R R
Sbjct: 1 AASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 30.4 bits (69), Expect = 4.8
Identities = 11/32 (34%), Positives = 12/32 (37%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R R R RRRRRR R R +
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARVAS 33
Score = 30.4 bits (69), Expect = 4.8
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R R R RRRRRR R R +
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARVASA 34
Score = 30.1 bits (68), Expect = 5.5
Identities = 12/30 (40%), Positives = 12/30 (40%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
S R R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 30.1 bits (68), Expect = 6.8
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
R R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 30.1 bits (68), Expect = 6.8
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 30.1 bits (68), Expect = 6.8
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
R R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 30.1 bits (68), Expect = 6.8
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
R R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 30.1 bits (68), Expect = 6.8
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
R R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 30.1 bits (68), Expect = 6.8
Identities = 11/30 (36%), Positives = 11/30 (36%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
R R R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
Score = 29.7 bits (67), Expect = 8.7
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
+ SR R RRRRRR R R
Sbjct: 2 ASSSSARLASASRTRAGRRRRRRSRSTARV 31
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 32.2 bits (74), Expect = 1.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 837 GGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEG 869
RRR K+EEE + + +E +EEEE
Sbjct: 305 LAWYLRRRSKQEEEAAAEAAKAQEEAAEEEEES 337
Score = 31.1 bits (71), Expect = 3.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEE 1020
++ K++EE E K +EE EEEE
Sbjct: 311 RRSKQEEEAAAEAAKAQEEAAEEEE 335
Score = 30.7 bits (70), Expect = 4.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 982 KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
++ K++EE + K +EE EEEE+ +
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
>gnl|CDD|185443 PTZ00097, PTZ00097, 60S ribosomal protein L19; Provisional.
Length = 175
Score = 31.2 bits (71), Expect = 1.5
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 14/126 (11%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRR------RRRRRRRRRRRRRRRR 954
R+ R+R RR +R+ R +RR R R RR+R RR R+ R
Sbjct: 50 RKPVAVHSRARARRFHEAKRKGRHTGIGKRRGTREARMPTKVLWMRRQRVLRRLLRKYRA 109
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKK--------KEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
+ K + + K K + K K K K +EKK +++ E ++ K + +
Sbjct: 110 AKKIDRHMYHEFYLKSKGNQFKNKRVLIEAIHKTKNEKVKEKKIQDQLEARRAKAKALRN 169
Query: 1007 EEEKKE 1012
+ + K+
Sbjct: 170 KRKAKK 175
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 30.8 bits (70), Expect = 1.5
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK-----EEEEKEE 1018
K K+K+ + K+ K++ K E+ E+K K++ EK + +K E E
Sbjct: 13 KLPASKRKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKPVLPEDLE 72
Query: 1019 EEKKRRRIRRK 1029
+E++ R++ +K
Sbjct: 73 KERRLRKVAQK 83
Score = 30.8 bits (70), Expect = 1.6
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+K + KKK + EK +K+ K + +K++ E+ + K E E+E++
Sbjct: 28 KKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKPVLPEDLEKERR 76
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 32.4 bits (74), Expect = 1.5
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
K KE +EE+ K +EE+K E ++ E +KE+ EK
Sbjct: 212 KSKEININKEEKNNGSNVNNNGN--KNNKEEQKGNDLSNELEDISLGPLEYDKEKLEK 267
Score = 29.7 bits (67), Expect = 9.3
Identities = 12/60 (20%), Positives = 26/60 (43%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
+ +E+ K +E++K + + E E K+K E+ K+ +EK ++
Sbjct: 218 INKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKK 277
>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated.
Length = 141
Score = 30.8 bits (70), Expect = 1.5
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
R S K + E+ K E E + + K +EE K ++ K K+E EK+ E KK
Sbjct: 39 RNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKK 98
Query: 1012 EEEEKEEEE 1020
E E + E
Sbjct: 99 AELESKYEA 107
Score = 28.5 bits (64), Expect = 8.9
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEE--KKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EE K +++ + +E+ +K+ + KK E K E ++ +K+E KE+ + E KE
Sbjct: 73 EEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKE 132
Query: 1018 EEEKKRRRI 1026
K +I
Sbjct: 133 ALNAKLSKI 141
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is a
family of fungal proteins whose function is not known.
Length = 126
Score = 30.7 bits (70), Expect = 1.6
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
++ E ++ +EEKK ++E +++ EE KE E ++++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 29.6 bits (67), Expect = 4.0
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
+E+ + ++ ++EE+K +E ++ E+ KE E EKKK
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 28.8 bits (65), Expect = 6.1
Identities = 13/36 (36%), Positives = 26/36 (72%)
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
++ E + ++E+KK +EEE K++ +E ++ E EKK+
Sbjct: 91 ERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 28.4 bits (64), Expect = 7.7
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
+++ E ++ +EEKK E + K + ++ +E E++KKK
Sbjct: 90 DERAEAQRARDEEKKLDE-EEAKRQHEEAKEREREKKK 126
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes. This
domain is about 200 amino acids in length. This domain is
found associated with pfam00013, pfam01966. This domain
has a single completely conserved residue A that may be
functionally important.
Length = 201
Score = 31.4 bits (72), Expect = 1.6
Identities = 25/79 (31%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE--KKKEEEEEKKKKKKEEEKEEEE 1009
+ R+ E E +E++ E +++E+ +K+E +K+E +KKEE E+K+K+ +++ E
Sbjct: 64 KLRAEAERELKERRNELQRQEKRLLQKEETLDRKDESLEKKEESLEEKEKELAARQQQLE 123
Query: 1010 KKEEEEKEEEEKKRRRIRR 1028
+KEEE +E E++++ + R
Sbjct: 124 EKEEELEELIEEQQQELER 142
Score = 30.2 bits (69), Expect = 3.9
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 31/126 (24%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE--EKKKEEEEKKKKEGKTKKE--E 987
+ R R + RR +R+ +R ++EE ++K E EKK+E E+K+KE +++ E
Sbjct: 64 KLRAEAERELKERRNELQRQEKRLLQKEETLDRKDESLEKKEESLEEKEKELAARQQQLE 123
Query: 988 KKKEEEEEKKKKKKEE-----------------EKEEEE----------KKEEEEKEEEE 1020
+K+EE EE +++++E E+ E E + EEE KEE +
Sbjct: 124 EKEEELEELIEEQQQELERISGLTAEEAKEILLEEVEAELKHEAAKMIKEIEEEAKEEAD 183
Query: 1021 KKRRRI 1026
KK + I
Sbjct: 184 KKAKEI 189
Score = 29.0 bits (66), Expect = 8.8
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 22/105 (20%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKE-EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE- 1004
R+ + EEE ++ EE KKE E KK+ + K+E K E E++ K++ E
Sbjct: 21 RKSIAEAKISSAEEEAKQIIEEAKKEAEALKKEALLEAKEEIHKLRAEAERELKERRNEL 80
Query: 1005 ---------KEEE--------EKKEE--EEKEEE-EKKRRRIRRK 1029
KEE EKKEE EEKE+E +++++ K
Sbjct: 81 QRQEKRLLQKEETLDRKDESLEKKEESLEEKEKELAARQQQLEEK 125
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and are
found in proteins involved in membrane dynamics and actin
reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting Proteins
(PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly
expressed in hematopoietic cells and are involved in the
regulation of cell adhesion and motility. Mutations in
PSTPIPs have been shown to cause autoinflammatory
disorders. PSTPIP1 contains an N-terminal F-BAR domain,
PEST motifs, and a C-terminal SH3 domain, while PSTPIP2
contains only the N-terminal F-BAR domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 239
Score = 31.7 bits (72), Expect = 1.6
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 11/82 (13%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK--KKKKKEEEKEEEEKKEEE--- 1014
EE EK +E ++K++EE+KK E K+ +K K+E +K K KK E+K E+ K E+
Sbjct: 85 EEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYE 144
Query: 1015 ------EKEEEEKKRRRIRRKR 1030
+ +E EK +++ + +
Sbjct: 145 KSSSGAQPKEAEKLKKKAAQCK 166
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 31.9 bits (73), Expect = 1.6
Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 990 KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK--RRRIR 1027
K E EK+++++EE +EE EK EE +EE KK +R +R
Sbjct: 95 KSGELEKRRERREEAEEELEKAIEEGDDEEIKKQSKRTVR 134
Score = 30.7 bits (70), Expect = 4.0
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
TKK KK + + KKKKK+ K E ++ + K++ +
Sbjct: 347 TATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
>gnl|CDD|217198 pfam02718, Herpes_UL31, Herpesvirus UL31-like protein. This is a
family of Herpesvirus proteins including UL31, UL53, and
the product of ORF 69 in some strains. The proteins in
this family have no known function.
Length = 262
Score = 31.8 bits (73), Expect = 1.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
RSR RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 31.1 bits (71), Expect = 2.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
RSR R R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 943
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.9 bits (68), Expect = 7.1
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.5 bits (67), Expect = 7.5
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
R R RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.5 bits (67), Expect = 7.8
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
R R R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.5 bits (67), Expect = 8.7
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRR 934
R RS RR R R R R++ RR R
Sbjct: 1 RSRSSVRRLPRSRPSRSSSRKKARRALR 28
Score = 29.1 bits (66), Expect = 9.6
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRR 924
R RR R R R SR++ RR R
Sbjct: 3 RSSVRRLPRSRPSRSSSRKKARRALR 28
>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b. This model
describes the F1/F0 ATP synthase b subunit in bacteria
only. Scoring just below the trusted cutoff are the
N-terminal domains of Mycobacterial b/delta fusion
proteins and a subunit from an archaeon, Methanosarcina
barkeri, in which the ATP synthase homolog differs in
architecture and is not experimentally confirmed. This
model helps resolve b from the related b' subunit. Within
the family is an example from a sodium-translocating
rather than proton-translocating ATP synthase [Energy
metabolism, ATP-proton motive force interconversion].
Length = 147
Score = 30.8 bits (70), Expect = 1.7
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+ + K+ +++ +E E K G EE K E EE++K K + E E +KE+ +
Sbjct: 50 KKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQARE 109
Query: 1017 E 1017
E
Sbjct: 110 E 110
>gnl|CDD|226096 COG3566, COG3566, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 379
Score = 31.8 bits (72), Expect = 1.7
Identities = 15/57 (26%), Positives = 24/57 (42%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
EE K E E KT E+ E++ + K + + K+E + K+ E K
Sbjct: 199 LEETKASEVEHLSASLKTATEKVDALEKDLHAAQAKLDSGQALTKEELDAKKAELSK 255
Score = 31.8 bits (72), Expect = 2.0
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
++ E+ + +K + + + TK+E K+ E K E +E ++
Sbjct: 215 KTATEKVDALEKDLHAAQAK--LDSGQALTKEELDAKKAELSKALAALEAANAADEDPQD 272
Query: 1014 EEKEEEEKKR 1023
+ E R
Sbjct: 273 RDAAVEAAAR 282
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like
[General function prediction only].
Length = 978
Score = 32.3 bits (74), Expect = 1.7
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
++ +K+E E +K+ + E+ +K ++ KK K+++++ + EE
Sbjct: 463 EKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEE 506
>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 32.0 bits (73), Expect = 1.7
Identities = 16/88 (18%), Positives = 26/88 (29%)
Query: 937 RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
RRRR+ R + + E E E E E K + + +
Sbjct: 324 LHRRRRKPFIRTVLGEIDADELEAAFEGGSEVTTDEGESASASLADKPKLGELEAFDRIA 383
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+ + +E E E + KR
Sbjct: 384 RARGEESSSERARALELALEGLYLAKRV 411
Score = 31.6 bits (72), Expect = 2.0
Identities = 12/98 (12%), Positives = 28/98 (28%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
RRRR+ R + +E + ++ + + E +
Sbjct: 324 LHRRRRKPFIRTVLGEIDADELEAAFEGGSEVTTDEGESASASLADKPKLGELEAFDRIA 383
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+ EE ++ + E E + ++ E
Sbjct: 384 RARGEESSSERARALELALEGLYLAKRVDRVVGEYGAY 421
>gnl|CDD|218945 pfam06224, DUF1006, Protein of unknown function (DUF1006). Family
of conserved bacterial proteins with unknown function.
This family probably contains a C-terminal
helix-turn-helix motif.
Length = 346
Score = 31.8 bits (73), Expect = 1.7
Identities = 6/70 (8%), Positives = 8/70 (11%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKE 967
R + R R E
Sbjct: 79 PLLRALLAPVLAAALAARGLGLDGRDLAALAAAVLELLAEEGPLTAAELGAALAERGWWN 138
Query: 968 EKKKEEEEKK 977
K K+
Sbjct: 139 WKWPGRPSKR 148
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in this
family are typically between 187 and 201 amino acids in
length. There is a single completely conserved residue Q
that may be functionally important.
Length = 158
Score = 31.0 bits (71), Expect = 1.7
Identities = 11/54 (20%), Positives = 22/54 (40%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
+ E + + E + K + K K + + +E E K K+ E E + +
Sbjct: 57 AADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
Score = 29.9 bits (68), Expect = 3.9
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+ E + E + K KKE+ + + K+ E K +E + E +
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
Score = 29.5 bits (67), Expect = 4.8
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEE-EEKKEEEEKEEEEKKRR 1024
+ E + K +K+K + E +E E K +E E E + +
Sbjct: 66 AAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDHALHQ 110
Score = 28.7 bits (65), Expect = 9.9
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
+ E + E + + KK+K + + +E + + +E E E
Sbjct: 62 ELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAE 103
>gnl|CDD|219082 pfam06547, DUF1117, Protein of unknown function (DUF1117). This
family represents the C-terminus of a number of
hypothetical plant proteins.
Length = 115
Score = 30.2 bits (68), Expect = 1.7
Identities = 27/98 (27%), Positives = 31/98 (31%), Gaps = 20/98 (20%)
Query: 861 GGEKE------EEEGGGGGGRRRRR----RRRSGKEEEEKKKKEGGGGRRRRRRKK---R 907
GE+E E +GG G RR R + +E GG RR R
Sbjct: 25 AGERELPVVYTEMDGGFNGNGAPRRISWGSRGNRS-------RERGGIIRRIFRNMFSCF 77
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
R RS R R R R R RRR
Sbjct: 78 GRVHSSRSSSSSSSSRSGSRDRSSSSRSSVFSRSSRRR 115
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type)
[DNA replication, recombination, and repair].
Length = 1444
Score = 32.3 bits (74), Expect = 1.8
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE------EEEKKKKKKEEEKEEEEKK 1011
EE+E +K EE EE EK +E +++ K E + +K + K EE K
Sbjct: 171 SEEQEFEKFEEAINEEVEKAAQEALEAEKKLKAESPKVEKPKPLFDGQKGRKIKSTEEIK 230
Query: 1012 EEEEKEEEE 1020
+ EEE
Sbjct: 231 PLIKINEEE 239
>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING
and CCCH-type Zn-fingers [General function prediction
only].
Length = 259
Score = 31.6 bits (71), Expect = 1.8
Identities = 17/83 (20%), Positives = 37/83 (44%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
R+R + + +++R++ EE+ EEK + K G ++ + E E
Sbjct: 3 RKRLVNKSSSDEKNQKKRQKINFSEEKLVASDEEKGSSDLMSLAKSGNSRTLQLSHENEG 62
Query: 995 EKKKKKKEEEKEEEEKKEEEEKE 1017
+ +KK ++ +K ++ KE
Sbjct: 63 KLQKKGEDLDKYTLTVNDDSTKE 85
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 31.6 bits (72), Expect = 1.8
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK--KKEEEKEEE 1008
E E KE + + K + K K + K ++ EE+ K+ K E +
Sbjct: 79 EPIPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPAS 130
Score = 30.4 bits (69), Expect = 4.2
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
E E E E K+ K E K K + K K K KK EE+ + E K E
Sbjct: 75 EPEPEPIPEPPKEAPVVIPKPEPKPKPKPKPKP----KPVKKVEEQPKREVKPVEP 126
>gnl|CDD|197400 cd10164, ClassIIa_HDAC5_Gln-rich-N, Glutamine-rich N-terminal helical
domain of HDAC5, a Class IIa histone deacetylase. This
family consists of the glutamine-rich domain of histone
deacetylase 5 (HDAC5). It belongs to a superfamily that
consists of the glutamine-rich N-terminal helical
extension to certain Class IIa histone deacetylases
(HDACs), including HDAC4, HDAC5 and HDCA9; it is missing
from HDAC7. This domain confers responsiveness to calcium
signals and mediates interactions with transcription
factors and cofactors, and it is able to repress
transcription independently of the HDAC C-terminal,
zinc-dependent catalytic domain. It has many intra- and
inter-helical interactions which are possibly involved in
reversible assembly and disassembly of proteins. HDACs
regulate diverse cellular processes through enzymatic
deacetylation of histone as well as non-histone proteins,
in particular deacetylating N(6)-acetyl-lysine residues.
Length = 97
Score = 29.8 bits (66), Expect = 1.8
Identities = 18/63 (28%), Positives = 40/63 (63%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E +K+ E ++ E + +K K + E +++++E K+++E E++ K+E++ +EE E
Sbjct: 30 EFQKQHEHLTRQHEVQLQKHLKVRAELFSEQQQQEILAAKRQQELEQQRKREQQRQEELE 89
Query: 1021 KKR 1023
K+R
Sbjct: 90 KQR 92
>gnl|CDD|148523 pfam06952, PsiA, PsiA protein. This family consists of several
Enterobacterial PsiA proteins. The function of PsiA is
unknown although it is thought that it may affect the
generation of an SOS signal in Escherichia coli.
Length = 238
Score = 31.7 bits (72), Expect = 1.8
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEE 961
R RR RRR+++ R+ R+ R +R + + E E
Sbjct: 111 RHRRTERRRQKQDIAFTRKMRQEAREVEQRWLLYQNLLAQAETE 154
Score = 30.5 bits (69), Expect = 3.4
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
R RR RRR+++ R+ R+ R +R +
Sbjct: 111 RHRRTERRRQKQDIAFTRKMRQEAREVEQRWLLYQ 145
Score = 30.5 bits (69), Expect = 3.4
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
R RR RRR+++ R+ R+ R +R +
Sbjct: 111 RHRRTERRRQKQDIAFTRKMRQEAREVEQRWLLYQ 145
Score = 30.5 bits (69), Expect = 3.7
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
R RR RRR+++ R+ R+ R +R +
Sbjct: 111 RHRRTERRRQKQDIAFTRKMRQEAREVEQRWLLYQ 145
Score = 30.2 bits (68), Expect = 4.7
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 944
RR RRR+++ R+ R+ R +R +
Sbjct: 113 RRTERRRQKQDIAFTRKMRQEAREVEQRWLLYQ 145
>gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional.
Length = 815
Score = 32.1 bits (73), Expect = 1.8
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
R + EE + +K++ + +E E ++ K KKE+K+ + K ++ KE E
Sbjct: 6 RSQAHAPAAEEGKGGTRKQKAENKEHEGEQSPKKAKKEKKQDDSGNGNGKSAEDAVKEFE 65
Query: 1009 E--KKEEEEKEEEEKK 1022
E K EE E+ +
Sbjct: 66 EFCKAIEEHLSIEQMR 81
Score = 32.1 bits (73), Expect = 2.2
Identities = 18/69 (26%), Positives = 36/69 (52%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
R++++ +E E E+ ++ KKE+++ G K E +E EE K +E E+ +
Sbjct: 22 RKQKAENKEHEGEQSPKKAKKEKKQDDSGNGNGKSAEDAVKEFEEFCKAIEEHLSIEQMR 81
Query: 1011 KEEEEKEEE 1019
+ EE ++
Sbjct: 82 EILEENGQD 90
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and eukaryotes.
This presumed domain is typically between 88 to 187 amino
acids in length.
Length = 139
Score = 30.6 bits (70), Expect = 1.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
E ++K E E+ +K+ ++ E++K EE K + K++EE
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEP 120
Score = 28.7 bits (65), Expect = 9.0
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 971 KEEEEKK-----KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
KEE + K + E K ++EE +K+ + + +++K +E + ++ K++EE
Sbjct: 65 KEERDDKTVSLNEAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEP 120
>gnl|CDD|147845 pfam05914, RIB43A, RIB43A. This family consists of several
RIB43A-like eukaryotic proteins. Ciliary and flagellar
microtubules contain a specialised set of protofilaments,
termed ribbons, that are composed of tubulin and several
associated proteins. RIB43A was first characterized in
the unicellular biflagellate, Chlamydomonas reinhardtii
although highly related sequences are present in several
higher eukaryotes including humans. The function of this
protein is unknown although the structure of RIB43A and
its association with the specialised protofilament
ribbons and with basal bodies is relevant to the proposed
role of ribbons in forming and stabilising doublet and
triplet microtubules and in organising their
three-dimensional structure. Human RIB43A homologues
could represent a structural requirement in centriole
replication in dividing cells.
Length = 379
Score = 31.9 bits (73), Expect = 1.8
Identities = 14/91 (15%), Positives = 48/91 (52%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
R++ ++ ++R ++ + R++ + ++ + E + + +E EEE ++
Sbjct: 149 EADRKKMQQEQQREWLEQQVQERQQAKAAEKQADTLHDQLRVELDHRAQELASLEEECRR 208
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+ + K EE+++++++E+++E+E+
Sbjct: 209 AVEQATADFNKALAEEQRERERREKQEEQED 239
Score = 31.6 bits (72), Expect = 2.0
Identities = 19/91 (20%), Positives = 45/91 (49%)
Query: 935 RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
RRR R R+ R + R G + E + + +EKK E +K+++ + +
Sbjct: 18 RRRNRELERQSRIFNAKVRTIGVDLEALDLQVQEKKLREAAEKERDEAYAAQMLLNDRVA 77
Query: 995 EKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+ +K++E+++ K ++ +++ ++K R
Sbjct: 78 QLLQKEQEQDRRRLNKDLQDFRQQHQRKETR 108
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 32.0 bits (73), Expect = 1.9
Identities = 15/86 (17%), Positives = 35/86 (40%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK 999
+ + R R+ +E K+ E + +E + K + K + EEE +K
Sbjct: 136 EKEADELWKPRGRKPEINVALKELKELEAEIREVQLKTRTWKDLVKALDEAEEELANLRK 195
Query: 1000 KKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+ + ++E+++ E + R+
Sbjct: 196 ELRQLEKEKQRLERLRRLLPLLAERK 221
Score = 32.0 bits (73), Expect = 2.2
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 887 EEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR 936
E E ++ + + K + + R+ R+ + ++R R RR
Sbjct: 163 EAEIREVQLKTRTWKDLVKALDEAEEELANLRKELRQLEKEKQRLERLRR 212
>gnl|CDD|219106 pfam06614, Neuromodulin, Neuromodulin. This family consists of
several neuromodulin (Axonal membrane protein GAP-43)
sequences and is found in conjunction with pfam00612.
GAP-43 is a neuronal calmodulin-binding phosphoprotein
that is concentrated in growth cones and pre-synaptic
terminals.
Length = 174
Score = 31.0 bits (69), Expect = 1.9
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
E+ K ++E + +EE+KK EE K E ++EE KEEE K
Sbjct: 121 EDATAKAAPQPEQETAESSQEEEKKDAVEETKPSESAQQEEAKEEEAK 168
Score = 31.0 bits (69), Expect = 2.1
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
++ K + +++ ++ +EE+KK+ EE K E ++EE KEEE K ++E
Sbjct: 121 EDATAKAAPQPEQETAESSQEEEKKDAVEETKPS---ESAQQEEAKEEEAKADQE 172
>gnl|CDD|222879 PHA02563, PHA02563, DNA polymerase; Provisional.
Length = 630
Score = 32.1 bits (73), Expect = 1.9
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 613 GFPNSRFFAQPLAALVTAKGRE-ILLNTKSLVENLNYEVIYGDTDSLM 659
G N P+AA +TA+ R +L + L E IY DTDS+
Sbjct: 442 GEENKEPNYIPIAAFITARARSNLLSALQYLYEKF----IYCDTDSIH 485
>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of
several PV-1 (PLVAP) proteins which seem to be specific
to mammals. PV-1 is a novel protein component of the
endothelial fenestral and stomatal diaphragms. The
function of this family is unknown.
Length = 442
Score = 31.9 bits (72), Expect = 1.9
Identities = 22/91 (24%), Positives = 38/91 (41%)
Query: 930 RRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKK 989
R R R R +R++ + +E K K EK+ + E K + ++ +
Sbjct: 288 RGLRADIERVARENADLQRQKLEAEQAAQAAQEAKAKAEKEAQAREAKLQAECARQTQLA 347
Query: 990 KEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
EE+ + ++ KE E KK E E+ E
Sbjct: 348 LEEKAALRAERDNLAKELEAKKREAEQLRME 378
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction that
requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 30.8 bits (70), Expect = 1.9
Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 6/41 (14%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+E++ ++EE+ EEE+++EE +E+E EEEE ++
Sbjct: 110 EEDESDDDEED------EEEEDDEEDDDEDESEEEESPVKK 144
>gnl|CDD|220719 pfam10368, YkyA, Putative cell-wall binding lipoprotein. YkyA is a
family of proteins containing a lipoprotein signal and a
hydrolase domain. It is similar to cell wall binding
proteins and might also be recognisable by a host immune
defence system. It is thus likely to belong to pathways
important for pathogenicity.
Length = 205
Score = 31.2 bits (71), Expect = 2.0
Identities = 22/69 (31%), Positives = 40/69 (57%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
GK++ E KK ++ +K++K K +KE +K EEE K KK E+ E+++ K++ +
Sbjct: 60 GKDDNEAIKKLSDQALANVDKREKLLKKEKESIEKSEEEFKSAKKYIEKIEDKKLKKKAK 119
Query: 1016 KEEEEKKRR 1024
+ + K R
Sbjct: 120 QLVKVMKER 128
Score = 30.4 bits (69), Expect = 3.7
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE-----EEKEEEEKKEE 1013
E+E+ ++E+KK EE EKK++E + + K++ E KK + +++E+ KKE+
Sbjct: 30 EQEKPFEEEQKKLEELEKKEQELYDQIIQLGKDDNEAIKKLSDQALANVDKREKLLKKEK 89
Query: 1014 EEKEEEEKK 1022
E E+ E++
Sbjct: 90 ESIEKSEEE 98
>gnl|CDD|217010 pfam02387, IncFII_repA, IncFII RepA protein family. This protein
is plasmid encoded and found to be essential for plasmid
replication.
Length = 279
Score = 31.6 bits (72), Expect = 2.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 881 RRSGKEEEEKKKKEGGGG-------RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRR 929
R+ E E KK K+ G RRR + R+ R+ R+ ++RRR R+
Sbjct: 172 RKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRRARK 227
Score = 29.6 bits (67), Expect = 7.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
RRR + R R R+ ++RRR R+ + +E++ KK
Sbjct: 197 RRRAKEFHIERAFSYRTERKAFGKKRRRARKLAKLDEKDIRKK 239
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 31.0 bits (70), Expect = 2.0
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
EE K EE EE+ + + EE EE +E EK E E R
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANER 42
>gnl|CDD|107026 PHA01160, PHA01160, nonstructural protein.
Length = 40
Score = 28.3 bits (63), Expect = 2.0
Identities = 16/34 (47%), Positives = 16/34 (47%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
RR R RRR RR R R R R RR R G
Sbjct: 4 RRYRLPRRRSRRLFSRTALRMHPRNRLRRIMRGG 37
Score = 26.8 bits (59), Expect = 5.3
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRR 937
+R R RRRSRR R R R R RR R
Sbjct: 4 RRYRLPRRRSRRLFSRTALRMHPRNRLRRIMR 35
Score = 26.8 bits (59), Expect = 6.1
Identities = 17/32 (53%), Positives = 17/32 (53%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRR 932
RR R RRRSRR SR R R R RR R
Sbjct: 4 RRYRLPRRRSRRLFSRTALRMHPRNRLRRIMR 35
Score = 26.8 bits (59), Expect = 7.0
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
RR R RRR RR R R R R RR R
Sbjct: 4 RRYRLPRRRSRRLFSRTALRMHPRNRLRRIMR 35
Score = 26.8 bits (59), Expect = 7.0
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
RR R RRR RR R R R R RR R
Sbjct: 4 RRYRLPRRRSRRLFSRTALRMHPRNRLRRIMR 35
Score = 26.8 bits (59), Expect = 7.0
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
RR R RRR RR R R R R RR R
Sbjct: 4 RRYRLPRRRSRRLFSRTALRMHPRNRLRRIMR 35
Score = 26.8 bits (59), Expect = 7.0
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
RR R RRR RR R R R R RR R
Sbjct: 4 RRYRLPRRRSRRLFSRTALRMHPRNRLRRIMR 35
Score = 26.8 bits (59), Expect = 7.0
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
RR R RRR RR R R R R RR R
Sbjct: 4 RRYRLPRRRSRRLFSRTALRMHPRNRLRRIMR 35
Score = 26.8 bits (59), Expect = 7.0
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
RR R RRR RR R R R R RR R
Sbjct: 4 RRYRLPRRRSRRLFSRTALRMHPRNRLRRIMR 35
Score = 26.8 bits (59), Expect = 7.0
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
RR R RRR RR R R R R RR R
Sbjct: 4 RRYRLPRRRSRRLFSRTALRMHPRNRLRRIMR 35
Score = 26.4 bits (58), Expect = 7.4
Identities = 15/32 (46%), Positives = 15/32 (46%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
RR R RRR RR R R R R RR R
Sbjct: 4 RRYRLPRRRSRRLFSRTALRMHPRNRLRRIMR 35
>gnl|CDD|215352 PLN02652, PLN02652, hydrolase; alpha/beta fold family protein.
Length = 395
Score = 31.8 bits (72), Expect = 2.0
Identities = 13/43 (30%), Positives = 15/43 (34%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRR 918
R R RRR + RR RRR + RRR
Sbjct: 51 RLRPRRRVSPLSSPEAGAVPAPSRRWRRRMAWKLEEEDTRRRR 93
Score = 31.8 bits (72), Expect = 2.2
Identities = 14/46 (30%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 875 RRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRR 920
R R RRR S E RR R++ RRRR
Sbjct: 51 RLRPRRRVSPLSSPEA---GAVPAPSRRWRRRMAWKLEEEDTRRRR 93
Score = 31.0 bits (70), Expect = 3.9
Identities = 23/86 (26%), Positives = 27/86 (31%), Gaps = 29/86 (33%)
Query: 914 RSRRRRRRRRR----------------RRRRRRRR-------------RRRRRRRRRRRR 944
RS RR RR R R RRR RR RRR +
Sbjct: 24 RSLLSRRALRRCLVFLHSLFLWLLLLLRLRPRRRVSPLSSPEAGAVPAPSRRWRRRMAWK 83
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKK 970
RRRR+ E E + E +
Sbjct: 84 LEEEDTRRRRALAEGVEMVEDGEGTR 109
Score = 30.6 bits (69), Expect = 4.0
Identities = 14/43 (32%), Positives = 16/43 (37%)
Query: 898 GRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
R RRR S + RR RRR + RRRR
Sbjct: 51 RLRPRRRVSPLSSPEAGAVPAPSRRWRRRMAWKLEEEDTRRRR 93
Score = 29.9 bits (67), Expect = 8.6
Identities = 15/36 (41%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 867 EEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRR 902
E G RR RRR + K EEE RRRR
Sbjct: 65 EAGAVPAPSRRWRRRMAWKLEEEDT-------RRRR 93
Score = 29.5 bits (66), Expect = 9.4
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 810 IRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEG 869
+RL RR + +R RRR K EEE +++ EG E E+
Sbjct: 50 LRLRPRRRVSPLSSPEAGAVPAPSRRW---RRRMAWKLEEEDTRRRRALAEGVEMVEDGE 106
Query: 870 GG 871
G
Sbjct: 107 GT 108
>gnl|CDD|227666 COG5374, COG5374, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 30.9 bits (70), Expect = 2.0
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEE 992
R R++ E +K +EE K ++ + + +KE KK+E
Sbjct: 151 RLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESSKKKE 192
Score = 29.8 bits (67), Expect = 6.0
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEE---KKKEEEEEKKKKKKEEEKEEE---EKKEEEE 1015
EE +E KK + K + T + K + E +K ++E K + E +E+ +
Sbjct: 125 EEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQ 184
Query: 1016 KEEEEKK 1022
KE +KK
Sbjct: 185 KESSKKK 191
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 31.9 bits (73), Expect = 2.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
KE ++KE+E++ KK+ KEE + + K EE E
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
Score = 31.1 bits (71), Expect = 3.7
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK 996
KE ++KE+E+K KKEGK ++ + + E+
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
Score = 30.0 bits (68), Expect = 6.6
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
K+ EE+EK+KK K+E KEE + + EE
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
Score = 30.0 bits (68), Expect = 8.0
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 988 KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
K++EE+E++KK KKE ++E + + EE E
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
>gnl|CDD|221643 pfam12572, DUF3752, Protein of unknown function (DUF3752). This
domain family is found in eukaryotes, and is typically
between 140 and 163 amino acids in length.
Length = 148
Score = 30.5 bits (69), Expect = 2.1
Identities = 15/70 (21%), Positives = 35/70 (50%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ ++E + K + K+ +K +E EKK+ K E+ ++++K+++++
Sbjct: 45 RLQDEVLGVEAGASAPAAASAKASKRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKKKKE 104
Query: 1017 EEEEKKRRRI 1026
EE + RR
Sbjct: 105 EENDDPSRRP 114
Score = 29.3 bits (66), Expect = 6.0
Identities = 17/86 (19%), Positives = 40/86 (46%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
+ +R + K ++ KE K K+ + K+ + E+ ++K+KKK
Sbjct: 42 KAKRLQDEVLGVEAGASAPAAASAKASKRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKK 101
Query: 1001 KEEEKEEEEKKEEEEKEEEEKKRRRI 1026
K+EE+ ++ + ++E++ +I
Sbjct: 102 KKEEENDDPSRRPFDREKDLAVGGKI 127
Score = 28.5 bits (64), Expect = 9.6
Identities = 13/70 (18%), Positives = 29/70 (41%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEG 981
+ +R + + +R + + K +E EKK+ + E+ +KK+K+
Sbjct: 42 KAKRLQDEVLGVEAGASAPAAASAKASKRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKK 101
Query: 982 KTKKEEKKKE 991
K ++E
Sbjct: 102 KKEEENDDPS 111
>gnl|CDD|236136 PRK07946, PRK07946, putative monovalent cation/H+ antiporter
subunit C; Reviewed.
Length = 163
Score = 30.8 bits (70), Expect = 2.1
Identities = 9/49 (18%), Positives = 11/49 (22%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
R RRR R R+ + EE K
Sbjct: 114 TRVALRRRGLASAAPDHDRSDDPETGRQTAEGDAFGPEEFERPLEEAKD 162
>gnl|CDD|220207 pfam09368, Sas10_Utp3_C, Sas10 C-terminal domain. This family
contains a C-terminal presumed domain in Sas10 which
hash been identified as a regulator of chromatin
silencing.
Length = 76
Score = 29.1 bits (66), Expect = 2.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
R+RKK RR+ R + R++ + +R + +RR R
Sbjct: 21 RKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREEDGG 58
Score = 28.0 bits (63), Expect = 5.4
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSG 956
R+R++ RR R ++R++ + +R + +RR R G
Sbjct: 21 RKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREEDGGYGG 61
Score = 27.6 bits (62), Expect = 7.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
R+R++ RR R ++R++ + +R + +RR R G E
Sbjct: 21 RKRKKDRRNPRVKKRKKYEKAVKRLKSQRRVVREEDGGYGGE 62
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 30.9 bits (70), Expect = 2.1
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 952 RRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
R +E +EE + +KK+ + K K+ EE ++E + + K++EE+ E +
Sbjct: 79 RSWYPLDEIDEEIQAMTEKKDIKAKDKEV--DAFEEGDEDELDYDEDKEEEEDDEVDSLD 136
Query: 1012 EEEEKEEEE 1020
+E + E+E+
Sbjct: 137 DENDDEDED 145
Score = 29.7 bits (67), Expect = 4.7
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E+K + K KE + ++ + ++ KEEEE+ + ++E ++E++ ++E E
Sbjct: 95 TEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEIL 153
Score = 29.7 bits (67), Expect = 4.9
Identities = 17/75 (22%), Positives = 47/75 (62%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKE 1006
+ + + + +E +E+E +E K+EEE+ + + +++ ++++E + +++E +
Sbjct: 101 KAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIEDDEVD 160
Query: 1007 EEEKKEEEEKEEEEK 1021
E+E +E+E++EE+K
Sbjct: 161 EDEDDDEDEEDEEDK 175
Score = 29.3 bits (66), Expect = 6.4
Identities = 17/75 (22%), Positives = 45/75 (60%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
+ + + EE +E++ ++ KEEEE + + + + + E+++E + E+++ +
Sbjct: 101 KAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIEDDEVD 160
Query: 1008 EEKKEEEEKEEEEKK 1022
E++ ++E++E+EE K
Sbjct: 161 EDEDDDEDEEDEEDK 175
Score = 29.0 bits (65), Expect = 8.3
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 963 EKKKEEKKKEEEEKKKKEGK----TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+KK+ K K++E +EG E+K++EE++E E + E+E+ E E
Sbjct: 95 TEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILI 154
Query: 1019 EEKKR 1023
E+ +
Sbjct: 155 EDDEV 159
>gnl|CDD|218274 pfam04801, Sin_N, Sin-like protein conserved region. Family of
higher eukaryotic proteins. SIN was identified as a
protein that interacts specifically with SXL (sex lethal)
in a yeast two-hybrid assay. The interaction is mediated
by one of the SXL RNA binding domains.
Length = 422
Score = 31.6 bits (72), Expect = 2.1
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE--EKKKEEEEEKKKKKKEEEKEEE 1008
R +++++ KK+E+ E+E+ ++ + K+ K E EK++K++E+
Sbjct: 133 RPSFQYLDKKDKRKKEEDTADEDEDPDEEAEEELKQVTVKFSRPETEKQRKRREQSYNFL 192
Query: 1009 EKKEEEE 1015
+KK EE
Sbjct: 193 QKKIAEE 199
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 32.1 bits (72), Expect = 2.2
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
R RRRS K + GG+R R + RS RRR R RRR R
Sbjct: 1546 RHADRRRSTKGPQRP------GGKRPRSSSSSSSASHDRSPSSSSRRRDGRPSSRRRPSR 1599
Query: 936 RRRRRRRRR 944
R R R
Sbjct: 1600 RMSARPPSR 1608
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 32.0 bits (72), Expect = 2.2
Identities = 17/72 (23%), Positives = 37/72 (51%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
++++ K+ + ++ +E+ + EE EEEE + ++ ++ EKE+ E +E E +
Sbjct: 414 DDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQP 473
Query: 1019 EEKKRRRIRRKR 1030
E R + R
Sbjct: 474 SESAIERYKEYR 485
Score = 30.8 bits (69), Expect = 4.1
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
K E+EE++ + EE + ++ KE + E+ +E ++ E EE
Sbjct: 389 QAKWAEDEEEEDGQCNDEESTMSAID-----DDDPKENDNEEVAGDEESAIDDNEGFEEL 443
Query: 1015 EKEEEEKKRRRIRRKR 1030
EEEE++ R R
Sbjct: 444 SPEEEERQLREFRDME 459
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 31.0 bits (70), Expect = 2.2
Identities = 9/53 (16%), Positives = 21/53 (39%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
+R++ + + R + +R ++ ++R + R R K EE
Sbjct: 99 ARKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 31.0 bits (70), Expect = 2.2
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE 995
R++ + R + E++ KK+EE E+ + T K K EE
Sbjct: 100 RKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 29.1 bits (65), Expect = 9.5
Identities = 6/52 (11%), Positives = 24/52 (46%)
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKK 979
R++ + R + +R ++ ++R + E+ E+ + + + +++
Sbjct: 100 RKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
>gnl|CDD|221324 pfam11933, DUF3451, Domain of unknown function (DUF3451). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 199 to 238 amino acids in length. This domain is
found associated with pfam06512, pfam00520. This domain
has a conserved ADD sequence motif.
Length = 222
Score = 31.3 bits (71), Expect = 2.2
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 5/48 (10%)
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEE-----EKEEEEKKRRRIRRK 1029
E KE K KKEE E+ + E E + K+ R + RK
Sbjct: 9 ESAKERRNRNDKNKKEEHSIGSEEGDSEKEPKSESADGRKRCRFLLRK 56
>gnl|CDD|240255 PTZ00070, PTZ00070, 40S ribosomal protein S2; Provisional.
Length = 257
Score = 31.2 bits (71), Expect = 2.2
Identities = 15/34 (44%), Positives = 15/34 (44%)
Query: 857 EEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEK 890
GGE G GGR R R R G E EEK
Sbjct: 2 AAARGGEGRGFGRRGRGGRGRGRGRGRGGEGEEK 35
Score = 29.7 bits (67), Expect = 7.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
R R RR R R R R R R G+ EE+E
Sbjct: 3 AARGGEGRGFGRRGRGGRGRGRGRGRGGEGEEKE 36
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 32.1 bits (72), Expect = 2.3
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EE E+ EE +E E+ +E + EE +E EE ++ EE EE + + EE E
Sbjct: 1073 EENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNE 1132
Query: 1019 E 1019
E
Sbjct: 1133 E 1133
Score = 31.7 bits (71), Expect = 2.6
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EE E+ EE +E E+ +E + +E+ EE EE ++ EE EE E+ EE EE
Sbjct: 996 EENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEE 1055
Score = 31.7 bits (71), Expect = 2.7
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
EE E+ EE +E E+ +E + EE +E EE ++ EE EE ++ ++E EE
Sbjct: 1070 EEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEE 1129
Score = 31.7 bits (71), Expect = 2.9
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EE E+ EE +E E+ +E + EE +E EE ++ EE EE E+ EE EE
Sbjct: 1046 EENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEE 1105
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 29.9 bits (68), Expect = 2.3
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEE---EKKKKEGKTKKEEKKKEEEEEKK 997
R+RR +R + KEE E+E ++ ++E E + + G + EKK E+E E+K
Sbjct: 24 RKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEK 78
Score = 29.5 bits (67), Expect = 2.7
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 966 KEEKKKEEEEKKKKEGKTK--KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
KE + E +K++ + K KEE +KE EE + +++ E ++ E E + E++
Sbjct: 14 KEAAEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKK 70
>gnl|CDD|222918 PHA02687, PHA02687, ORF061 late transcription factor VLTF-4;
Provisional.
Length = 231
Score = 31.1 bits (70), Expect = 2.3
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 958 EEEEEEKKKE-----EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK------KEEEKE 1006
E E+E ++E E K K KK + K E+ K +K ++++ E
Sbjct: 61 EPSEQECQQEQLPVPESVPPAPVKTPKRRTKKKAKADKPEKSPKAVEKLCPPDDRDDKNE 120
Query: 1007 EEEKKEEEEKEEEE 1020
E+E EE ++ EE
Sbjct: 121 EKEPTEEAQRNEES 134
Score = 30.4 bits (68), Expect = 4.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
K+ KKK + +K +K K + K +++ K +E+E EE ++ EE + E
Sbjct: 87 KRRTKKKAKADKPEKSPKAVE---KLCPPDDRDDKNEEKEPTEEAQRNEESGDAE 138
>gnl|CDD|205150 pfam12925, APP_E2, E2 domain of amyloid precursor protein. The E2
domain is the largest of the conserved domains of the
amyloid precursor protein. The structure of E2 consists
of two coiled-coil sub-structures connected through a
continuous helix, and bears an unexpected resemblance to
the spectrin family of protein structures.E 2 can
reversibly dimerise in solution, and the dimerisation
occurs along the longest dimension of the molecule in an
antiparallel orientation, which enables the N-terminal
substructure of one monomer to pack against the
C-terminal substructure of a second monomer. The high
degree of conservation of residues at the putative dimer
interface suggests that the E2 dimer observed in the
crystal could be physiologically relevant. Heparin
sulfate proteoglycans, the putative ligands for the
precursor present in extracellular matrix, bind to E2 at
a conserved and positively charged site near the dimer
interface.
Length = 193
Score = 30.8 bits (70), Expect = 2.3
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE--KKKKKKEEEKEEEEKKE 1012
KE+ E E+ KE KK+ EE+ +++ + K+ EE E K K + + + +KE
Sbjct: 20 KEDNEHERYKEAKKRLEEKHRERM---TQVMKEWEEAESQYKNLPKADPKAAQLMRKE 74
>gnl|CDD|233929 TIGR02563, cas_Csy4, CRISPR-associated protein Cas6/Csy4, subtype
I-F/YPEST. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) is a widespread family of
prokaryotic direct repeats with spacers of unique
sequence between consecutive repeats. This protein
family, typified by YPO2462 of Yersinia pestis, is a
CRISPR-associated (Cas) family strictly associated with
the Ypest subtype of CRISPR/Cas locus. This family is
designated Csy4, for CRISPR/Cas Subtype Ypest protein 4
[Mobile and extrachromosomal element functions, Other].
Length = 185
Score = 30.9 bits (70), Expect = 2.3
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE 972
RR RR++ + R RRR R +EE + + K
Sbjct: 95 RRTVRRKQTKSSAARLRRRLERRQGINDEEARPRAPDKTT 134
Score = 29.7 bits (67), Expect = 5.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 906 KRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
KRR RR++++ R RRR RR+ R R
Sbjct: 94 KRRTVRRKQTKSSAARLRRRLERRQGINDEEARPR 128
Score = 29.3 bits (66), Expect = 7.6
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
RR RR++ + R RRR RR+ R R
Sbjct: 95 RRTVRRKQTKSSAARLRRRLERRQGINDEEARPR 128
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 31.7 bits (72), Expect = 2.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
+KK + KK+ K K KT K++ K + ++ KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein (DUF2052).
This entry is of sequences of two conserved domains
separated by a region of low complexity, spanning some
200 residues. The function is unknown.
Length = 178
Score = 30.9 bits (70), Expect = 2.4
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
R R E++EEE+ EE++++ EE+ ++E + + EEEEE E E
Sbjct: 65 DREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPE 124
Query: 1008 EEKKEEEEKEEEEKKR 1023
E ++ EE E +R
Sbjct: 125 EREELREEFISEMHQR 140
Score = 30.1 bits (68), Expect = 3.5
Identities = 21/76 (27%), Positives = 39/76 (51%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
R R ++EEEE ++EE+ EEE ++++E + ++EEE+ + +
Sbjct: 65 DREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPE 124
Query: 1006 EEEEKKEEEEKEEEEK 1021
E EE +EE E ++
Sbjct: 125 EREELREEFISEMHQR 140
>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal
structure and biogenesis].
Length = 125
Score = 29.9 bits (68), Expect = 2.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
R + + RRRRR +R R R++ R R RRS +
Sbjct: 1 PRYKVKFRRRRRGKRAYRIRKKLLGTSGRPRLVVRRSNR 39
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 31.0 bits (71), Expect = 2.4
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 957 KEEEEEEKKKEEKKKE--EEEKKKKEGKTKKEEKKKEEEE 994
K EEE +K E+KK EE+K+K + + E+ + E
Sbjct: 10 KLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTPE 49
Score = 31.0 bits (71), Expect = 2.6
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
++ EEK EEE +K ++ K+ E+ KE+ E+ + +E + E
Sbjct: 4 DETLEEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTPE 49
>gnl|CDD|233221 TIGR00985, 3a0801s04tom, mitochondrial import receptor subunit
translocase of outer membrane 20 kDa subunit.
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 148
Score = 30.3 bits (68), Expect = 2.4
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEE--EEKKKKEGKTKKEEKKK 990
+RR R++ RRRR+++ + K+ K+K+ ++ K T EK+
Sbjct: 29 YKRRNDPDFRKKLRRRRKKQAGAEKQYGGLAKEKQRQRIRPAAAGLAKAPDPTDPSEKEA 88
Score = 28.7 bits (64), Expect = 9.6
Identities = 12/59 (20%), Positives = 25/59 (42%)
Query: 936 RRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
+RR R++ RRRR++ E++ +EK+++ + E+E
Sbjct: 29 YKRRNDPDFRKKLRRRRKKQAGAEKQYGGLAKEKQRQRIRPAAAGLAKAPDPTDPSEKE 87
>gnl|CDD|150406 pfam09727, CortBP2, Cortactin-binding protein-2. This entry is the
first approximately 250 residues of cortactin-binding
protein 2. In addition to being a positional candidate
for autism this protein is expressed at highest levels in
the brain in humans. The human protein has six associated
ankyrin repeat domains pfam00023 towards the C-terminus
which act as protein-protein interaction domains.
Length = 193
Score = 31.0 bits (70), Expect = 2.5
Identities = 19/67 (28%), Positives = 37/67 (55%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
+R+R++ E EEE++K K+ ++ + ++ KK E+E+ ++ KKE+E +
Sbjct: 110 KRQRKTVLELEEEKRKHIRYMKKSDDFTNLLEQERERLKKLLEQEKSQQAKKEQEHRKLL 169
Query: 1010 KKEEEEK 1016
EEE
Sbjct: 170 ATLEEEL 176
Score = 30.6 bits (69), Expect = 3.0
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEE-----EKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
+R+R+ + EEE+ K KK ++ E++++ K E++K ++ +++++ +K
Sbjct: 110 KRQRKTVLELEEEKRKHIRYMKKSDDFTNLLEQERERLKKLLEQEKSQQAKKEQEHRKLL 169
Query: 1004 EKEEEEKK 1011
EEE
Sbjct: 170 ATLEEELG 177
Score = 30.2 bits (68), Expect = 4.4
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKK---EEEEEKKKKKKEEE 1004
+ +RR + E+++++ + EEEK+K KK + E+E E+ KK E+E
Sbjct: 95 KETQRRMLAQLLAAEKRQRKTVLELEEEKRKHIRYMKKSDDFTNLLEQERERLKKLLEQE 154
Query: 1005 KEEEEKKEEEEKEEEEKKR 1023
K ++ KKE+E ++
Sbjct: 155 KSQQAKKEQEHRKLLATLE 173
>gnl|CDD|224161 COG1240, ChlD, Mg-chelatase subunit ChlD [Coenzyme metabolism].
Length = 261
Score = 31.2 bits (71), Expect = 2.5
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 888 EEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
E+ ++K G GRR R RR R R+ R R R
Sbjct: 12 EQMEEKTGTSGRRSAAR-SGRRGRYVRALPNGPAHRLAVDATLRAAAAGPVAIEPEDLRE 70
Query: 948 RRRRRR 953
+ R R
Sbjct: 71 KIREGR 76
Score = 31.2 bits (71), Expect = 2.8
Identities = 14/74 (18%), Positives = 18/74 (24%), Gaps = 12/74 (16%)
Query: 866 EEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRR 925
EE+ G G R R R G+ R R + R
Sbjct: 15 EEKTGTSGRRSAARSGRRGR------------YVRALPNGPAHRLAVDATLRAAAAGPVA 62
Query: 926 RRRRRRRRRRRRRR 939
R + R R
Sbjct: 63 IEPEDLREKIREGR 76
Score = 30.0 bits (68), Expect = 5.8
Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 911 RRRRSRRRRRRRRRRRRRRRRRRR-------RRRRRRRRRRRRRRRRRRRRSGKE 958
RR +R RR R R R R R + R G+
Sbjct: 23 RRSAARSGRRGRYVRALPNGPAHRLAVDATLRAAAAGPVAIEPEDLREKIREGRA 77
Score = 30.0 bits (68), Expect = 5.9
Identities = 14/56 (25%), Positives = 16/56 (28%), Gaps = 7/56 (12%)
Query: 908 RRSRRRRSRRRRRRRRRRRRRRRR-------RRRRRRRRRRRRRRRRRRRRRRRSG 956
RRS R RR R R R R R + R R+G
Sbjct: 23 RRSAARSGRRGRYVRALPNGPAHRLAVDATLRAAAAGPVAIEPEDLREKIREGRAG 78
>gnl|CDD|224680 COG1766, fliF, Flagellar basal body M-ring protein [Cell motility and
secretion].
Length = 545
Score = 31.6 bits (72), Expect = 2.5
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
R RRRR + E EE E + EEE+ +E + +E+ +EE+++ K E E
Sbjct: 467 RPRRRRGAEALEAAEE---ERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGK--EVLLE 521
Query: 1008 EEKKEEEEKEEE 1019
++ +E E
Sbjct: 522 RLREMAKEDPER 533
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim have
been identified in both mice and humans (mTim and hTIM,
respectively). Mammalian TIM is not the true orthologue
of Drosophila TIM, but is the likely orthologue of a fly
gene, timeout (also called tim-2). mTim has been shown to
be essential for embryonic development, but does not have
substantiated circadian function. Some family members
contain a SANT domain in this region.
Length = 507
Score = 31.6 bits (71), Expect = 2.6
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E+ +E + E + +++K G EE+ EEE+K KK++ ++ +++
Sbjct: 396 EQADESEHETLALRKNARQRKAGLASPEEEALGEEEQKAPPKKKQLNQKNKQQTGSGTNS 455
Query: 1019 EEKK 1022
+E++
Sbjct: 456 DEER 459
Score = 31.2 bits (70), Expect = 3.7
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE 1009
RRR S EEEE + + + + E+ + E +T K + + +EE EEE
Sbjct: 372 RRRAASLSGEEEEPEDELKDDVDGEQADESEHETLALRKNARQRKAGLASPEEEALGEEE 431
Query: 1010 KKEEEEKEEEEKKRRRI 1026
+K +K++ +K ++
Sbjct: 432 QKAPPKKKQLNQKNKQQ 448
Score = 29.7 bits (66), Expect = 9.7
Identities = 18/72 (25%), Positives = 33/72 (45%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
S K E KK+ +K K ++ ++ G+ +E +EEE+ + K +E EK + E
Sbjct: 217 VSEKRELRGGKKRRKKLKPKQPNGEESGEDDFQEDPEEEEQLPESKPEETEKRVSAFQVE 276
Query: 1014 EEKEEEEKKRRR 1025
+ R+
Sbjct: 277 GSTLISAENLRQ 288
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta; Provisional.
Length = 752
Score = 31.6 bits (72), Expect = 2.6
Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK 1010
+R + K E EE K EE + +K K KE ++ E + E
Sbjct: 255 KRMGAYKTIE-----GEELLKLEERTAAWRAELRKSMKPKERTAIERVPMPELDPEYRAH 309
Query: 1011 KEEEE 1015
EE
Sbjct: 310 NRFEE 314
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a minor
protein in the core of the virion is probably the viral
helicase.
Length = 322
Score = 31.2 bits (70), Expect = 2.6
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRI 1026
+ G++K++E K E+ +E++ E E++++ KEE +KE E+ R
Sbjct: 29 ESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVDRR 76
Score = 30.0 bits (67), Expect = 6.7
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 848 EEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEK 890
E + K+KE ++E G+++ G G +++ + S KE E+
Sbjct: 29 ESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDA 71
>gnl|CDD|215277 PLN02501, PLN02501, digalactosyldiacylglycerol synthase.
Length = 794
Score = 31.5 bits (71), Expect = 2.6
Identities = 22/81 (27%), Positives = 33/81 (40%)
Query: 932 RRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE 991
R RRRR R R + G+ E E + + + E EK+ + + K E
Sbjct: 142 RVRRRRNSRVRFTEFWGEAKEEGEGQFGEWEPIRALKTRFRELEKRSESLEIFGGFKNSE 201
Query: 992 EEEEKKKKKKEEEKEEEEKKE 1012
E+ K K KE +E K+
Sbjct: 202 FVEKLKSSLKAIYKEPQESKD 222
Score = 30.7 bits (69), Expect = 4.6
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 863 EKEEEEGGG--GGGRRRRRRRRSGKEEE--EKKKKEGGGGRRR----RRRKKRRRSRRRR 914
E E ++ GG R RRRR + E + K+EG G R K R R +R
Sbjct: 128 EMELDDRGGIVEFDRVRRRRNSRVRFTEFWGEAKEEGEGQFGEWEPIRALKTRFRELEKR 187
Query: 915 S 915
S
Sbjct: 188 S 188
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 31.6 bits (71), Expect = 2.6
Identities = 32/177 (18%), Positives = 71/177 (40%), Gaps = 7/177 (3%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGG-----RR 900
KE KK +++ + KE+ + G + + + GK++ K+K+
Sbjct: 931 SKETSNKKAQDKVND--IKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEE 988
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEE 960
+ +++ R R+ ++ + R + R+R + ++ + + +
Sbjct: 989 CEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQ 1048
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+ K+E +K EE K ++K E+E K KKE + + EE+ +E
Sbjct: 1049 VLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYRE 1105
Score = 31.6 bits (71), Expect = 3.1
Identities = 41/214 (19%), Positives = 81/214 (37%), Gaps = 33/214 (15%)
Query: 840 RRRRRGKKEEEKKKKKEEEEEGGE---KEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGG 896
R+++ K E + K E+ +G + + R + R + E EK KE
Sbjct: 277 RKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKE-- 334
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRR--------------- 941
RR +++ + R + + R + R R + R
Sbjct: 335 ---RRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQ 391
Query: 942 --------RRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKT--KKEEKKKE 991
R+ + + + + +E+ K+E+ E ++KK G+T K+E ++
Sbjct: 392 IKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEK 451
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
++EE K KE ++ E E ++E +K R
Sbjct: 452 KQEELKFVIKELQQLEGSSDRILELDQELRKAER 485
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 31.6 bits (72), Expect = 2.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
KE K + EE +++ +EE + ++ +E ++ EE K R
Sbjct: 60 KEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARD 100
Score = 30.8 bits (70), Expect = 4.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE 1002
+E +E K + ++ +EE+ +E E+ K+ EE K + E
Sbjct: 56 EEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKARDE 101
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Provisional.
Length = 489
Score = 31.3 bits (72), Expect = 2.6
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
++GK + E+ EEK K E +EE +E+ + +E KKR+ + K
Sbjct: 120 EKGKVILKPDAYEDPEEKALKALAEGDKEELSEEDLKVLKELKKRKLVEEK 170
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 30.8 bits (70), Expect = 2.7
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
EE E+ + +E++ E ++ +EG + + EE + ++ EE +EE + E
Sbjct: 40 EELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGRVLER 96
Score = 29.7 bits (67), Expect = 6.7
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKK---EEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E++ + E K K +K EEE E+ + KEEE E ++ +E E
Sbjct: 6 NEDRDDALPFQVIEFKDLANAGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQEGIE 65
Query: 1018 EEEKKR 1023
E ++
Sbjct: 66 EGAREG 71
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 31.1 bits (71), Expect = 2.7
Identities = 17/53 (32%), Positives = 35/53 (66%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
K EE+ E+++EE+ E EE++++E + +K+EK ++ K + KE++ E+
Sbjct: 13 VEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIED 65
Score = 31.1 bits (71), Expect = 3.1
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 3/56 (5%)
Query: 977 KKKEGKT--KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK-KRRRIRRK 1029
K+K K K EEK +EEEEE+ + +EEE+EE+E++++E+ +K K I+ K
Sbjct: 6 KEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEK 61
Score = 30.7 bits (70), Expect = 4.2
Identities = 19/41 (46%), Positives = 31/41 (75%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+K +K E+K EEEEE++ + EEE+EEE+++E++EK
Sbjct: 6 KEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEK 46
>gnl|CDD|236153 PRK08116, PRK08116, hypothetical protein; Validated.
Length = 268
Score = 31.1 bits (71), Expect = 2.7
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEE 987
R + R R ++RR R + S +E+ E ++ +K K
Sbjct: 46 EREAEEAKEREEENREKQRRIERLKSNSLLDEKFRNSTFENFLFDKGSEK----AYKIAR 101
Query: 988 KKKEEEEEKKKK 999
K ++ EE KK+
Sbjct: 102 KYVKKFEEMKKE 113
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family. The
proteins of the Trk family are derived from Gram-negative
and Gram-positive bacteria, yeast and wheat. The proteins
of E. coli K12 TrkH and TrkG as well as several yeast
proteins have been functionally characterized.The E. coli
TrkH and TrkG proteins are complexed to two peripheral
membrane proteins, TrkA, an NAD-binding protein, and
TrkE, an ATP-binding protein. This complex forms the
potassium uptake system. This family is specific for the
eukaryotic Trk system [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 800
Score = 31.5 bits (71), Expect = 2.7
Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 6/145 (4%)
Query: 891 KKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
++ G ++R RR++ R R R +RR + +
Sbjct: 131 ERYFDGIRDSSKQRFFLRRTKTLLQRELEDRPETGVAGRVTVPHGSAKRRDFQDKLFSGE 190
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK------KKKEEE 1004
+R ++ + K + + E + E K+ + + E+ + E
Sbjct: 191 FVKRDEPDQNSPDVKSDTRADESISDLEFEKFAKRRGSRDVDPEDLYRSIMMLQGIHERI 250
Query: 1005 KEEEEKKEEEEKEEEEKKRRRIRRK 1029
+E+ ++ E + ++ R+
Sbjct: 251 REKSSANSRSDERSSESIQEQVERR 275
>gnl|CDD|233421 TIGR01453, grpIintron_endo, group I intron endonuclease. This model
represents one subfamily of endonucleases containing the
endo/excinuclease amino terminal domain, pfam01541 at its
amino end. A distinct subfamily includes excinuclease abc
subunit c (uvrC). Members of pfam01541 are often termed
GIY-YIG endonucleases after conserved motifs near the
amino end. This subfamily in This model is found in open
reading frames of group I introns in both phage and
mitochondria. The closely related endonucleases of phage
T4: segA, segB, segC, segD and segE, score below the
trusted cutoff for the family.
Length = 214
Score = 30.8 bits (70), Expect = 2.8
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 16/69 (23%)
Query: 953 RRSGKEEEEEEKKKEEK------------KKEEEEKKKKEGKTKKEEK----KKEEEEEK 996
G + EE K K K K EE K K K K E K+ EE
Sbjct: 93 SSLGYKHSEETKAKMSKLFSGKKNNPWYGKTHSEETKAKISKNKLGENNPFFGKKHSEET 152
Query: 997 KKKKKEEEK 1005
KKK E+EK
Sbjct: 153 KKKISEKEK 161
>gnl|CDD|216159 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family. This family
includes ribosomal proteins from the large subunit. This
family includes L18 from bacteria and L5 from
eukaryotes. It has been shown that the amino terminal 93
amino acids of rat Rpl5 are necessary and sufficient to
bind 5S rRNA in vitro. Suggesting that the entire family
has a function in rRNA binding.
Length = 119
Score = 29.5 bits (67), Expect = 2.8
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 926 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGK 957
+RRRRRR+R R RR+ + R R RRS K
Sbjct: 2 KRRRRRRKRLRVRRKLKGTAERPRLVVRRSNK 33
Score = 28.4 bits (64), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRR 939
+RRRRRR+R R RR+ + R R
Sbjct: 2 KRRRRRRKRLRVRRKLKGTAERPR 25
Score = 28.4 bits (64), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRR 940
+RRRRRR+R R RR+ + R R
Sbjct: 2 KRRRRRRKRLRVRRKLKGTAERPR 25
Score = 28.4 bits (64), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRR 941
+RRRRRR+R R RR+ + R R
Sbjct: 2 KRRRRRRKRLRVRRKLKGTAERPR 25
Score = 28.4 bits (64), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRR 942
+RRRRRR+R R RR+ + R R
Sbjct: 2 KRRRRRRKRLRVRRKLKGTAERPR 25
Score = 28.4 bits (64), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRR 943
+RRRRRR+R R RR+ + R R
Sbjct: 2 KRRRRRRKRLRVRRKLKGTAERPR 25
Score = 28.4 bits (64), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRR 944
+RRRRRR+R R RR+ + R R
Sbjct: 2 KRRRRRRKRLRVRRKLKGTAERPR 25
Score = 28.4 bits (64), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 922 RRRRRRRRRRRRRRRRRRRRRRRR 945
+RRRRRR+R R RR+ + R R
Sbjct: 2 KRRRRRRKRLRVRRKLKGTAERPR 25
Score = 28.4 bits (64), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRR 946
+RRRRRR+R R RR+ + R R
Sbjct: 2 KRRRRRRKRLRVRRKLKGTAERPR 25
Score = 28.4 bits (64), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRR 947
+RRRRRR+R R RR+ + R R
Sbjct: 2 KRRRRRRKRLRVRRKLKGTAERPR 25
Score = 28.4 bits (64), Expect = 9.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 925 RRRRRRRRRRRRRRRRRRRRRRRR 948
+RRRRRR+R R RR+ + R R
Sbjct: 2 KRRRRRRKRLRVRRKLKGTAERPR 25
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles, clathrin-coated
and synaptic vesicles. They have important roles in
membrane trafficking processes. The 116kDa subunit
(subunit a) in the V-type ATPase is part of the V0
functional domain responsible for proton transport. The a
subunit is a transmembrane glycoprotein with multiple
putative transmembrane helices it has a hydrophilic amino
terminal and a hydrophobic carboxy terminal. It has roles
in proton transport and assembly of the V-type ATPase
complex. This subunit is encoded by two homologous gene
in yeast VPH1 and STV1.
Length = 707
Score = 31.6 bits (72), Expect = 2.8
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 966 KEEKKKEEEEKK--KKEGKTKKEE---KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
E ++ +E E+K K E K KK K + + K+ + EEE E E +E E
Sbjct: 28 NEVRRCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVE 87
Query: 1021 KKRRRIRRKR 1030
+ + ++
Sbjct: 88 ENLESLEKEI 97
>gnl|CDD|237853 PRK14897, PRK14897, unknown domain/DNA-directed RNA polymerase
subunit A'' fusion protein; Provisional.
Length = 509
Score = 31.3 bits (71), Expect = 2.9
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 945 RRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE--------EEEEK 996
+R R + E EEK+ EE + K + KK EE K
Sbjct: 92 KRLFGRILDENMSFSTGELLTAEEKEYYEENSNEDVLKVIDDVKKLGFRLPPSVIEEIAK 151
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
KKKE +E E+ +EE E+ R
Sbjct: 152 AMKKKELSDDEYEEILRRIREEYERAR 178
>gnl|CDD|224559 COG1645, COG1645, Uncharacterized Zn-finger containing protein
[General function prediction only].
Length = 131
Score = 30.1 bits (68), Expect = 2.9
Identities = 12/64 (18%), Positives = 26/64 (40%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
E EEEE++ + ++ + + E + + K+E E+ ++ E K+
Sbjct: 52 YREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEKLLSVIETLKRIEA 111
Query: 1026 IRRK 1029
R
Sbjct: 112 RRDL 115
Score = 29.7 bits (67), Expect = 2.9
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
R EEEEE+ + E +++ + + E KK E +E +K E K+
Sbjct: 52 YREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKK--EIDEDPASEKLLSVIETLKRI 109
Query: 1013 EEEKEEEEKKRRRIR 1027
E ++ R +
Sbjct: 110 EARRDLSRAGRELVE 124
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 31.2 bits (71), Expect = 2.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKE 991
GK ++EEE KK+ K + K G K KKK
Sbjct: 268 GKIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKA 303
>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.
Length = 385
Score = 31.3 bits (72), Expect = 2.9
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKK 965
R +RR R R R +G+ + ++
Sbjct: 6 RLEAALAQRRAAGLYRSLRPREGGAGRWLVVDGRR 40
Score = 30.1 bits (69), Expect = 6.7
Identities = 8/36 (22%), Positives = 10/36 (27%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
R +RR R R R R G+
Sbjct: 6 RLEAALAQRRAAGLYRSLRPREGGAGRWLVVDGRRM 41
Score = 29.7 bits (68), Expect = 8.1
Identities = 9/36 (25%), Positives = 10/36 (27%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
R +RR R R R R RR
Sbjct: 5 DRLEAALAQRRAAGLYRSLRPREGGAGRWLVVDGRR 40
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 30.8 bits (70), Expect = 2.9
Identities = 9/64 (14%), Positives = 31/64 (48%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEE 974
++R+ R+ + ++ + +++ +++R+ +R KE + E++ K+ +
Sbjct: 2 LLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAK 61
Query: 975 EKKK 978
+ K
Sbjct: 62 KPGK 65
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 31.0 bits (69), Expect = 2.9
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
EE E + EE ++ + K EE +K + EE K EE+K EE+ E
Sbjct: 198 EEAGAAGAEGEAGEEP----AADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAE 253
Query: 1019 E 1019
E
Sbjct: 254 E 254
Score = 30.2 bits (67), Expect = 5.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEG-KTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
EE + E +E + E + K EE E+ + ++ K EE+K EE+ EE
Sbjct: 198 EEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 30.6 bits (69), Expect = 2.9
Identities = 16/57 (28%), Positives = 33/57 (57%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
K+E +E +K+ E E+K K ++ E+K+E E++ + K++ E + +E E+
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEK 58
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 31.4 bits (71), Expect = 2.9
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE- 1018
E+ E KKE K+ E+K K E + K + EE+++K + KK EE +E
Sbjct: 118 EKIESKKESINKKNEKKIKNE---ASLQVKTQREEKEEKDFIADCWRNLYKKNEERFKEY 174
Query: 1019 -EEKKRRRIRRK 1029
E KR++ +RK
Sbjct: 175 LENFKRKKFKRK 186
>gnl|CDD|221012 pfam11169, DUF2956, Protein of unknown function (DUF2956). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 103
Score = 29.2 bits (66), Expect = 2.9
Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 984 KKEEKKK--EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
KK++K K E ++ +K++ K ++++ EE+ E + +
Sbjct: 40 KKQQKAKAREADKARKQQLKAKQRQAANDDEEDTIESVTQSQ 81
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 30.5 bits (69), Expect = 2.9
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E +KK + E E+ ++ ++E +K K E E K E++K E
Sbjct: 44 AELAEKKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAEL 103
Query: 1020 EK 1021
+
Sbjct: 104 KD 105
Score = 29.7 bits (67), Expect = 5.8
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 951 RRRRSGKEEEEEEKKKEEKKKEEE----EKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
+ ++E EK K+ + E EKKK E K +EE++ ++ + K
Sbjct: 69 ADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEEEREGILRSKQAEDGK 123
>gnl|CDD|150747 pfam10107, Endonuc_Holl, Endonuclease related to archaeal Holliday
junction resolvase. This domain is found in various
predicted bacterial endonucleases which are distantly
related to archaeal Holliday junction resolvases.
Length = 153
Score = 30.0 bits (68), Expect = 3.0
Identities = 13/60 (21%), Positives = 27/60 (45%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
+ + + + +R R + E E + +E + K EE +KK+E + +K+ K
Sbjct: 10 FIKIIKLQGKVEKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIRKDAVNKSRA 69
Score = 28.9 bits (65), Expect = 8.5
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
+ + + + +R R + R R + E E K +E +KKEE+E +K
Sbjct: 10 FIKIIKLQGKVEKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIRK 61
>gnl|CDD|184260 PRK13704, PRK13704, plasmid SOS inhibition protein A; Provisional.
Length = 240
Score = 30.8 bits (70), Expect = 3.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 947
R R R RRR R +R R++ R ++ R
Sbjct: 111 RFRVRERRRHRSAIAFQRYSRQQAREAEQKWRAY 144
Score = 29.6 bits (67), Expect = 7.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 916 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
R R R RRR R +R R++ R ++ R
Sbjct: 111 RFRVRERRRHRSAIAFQRYSRQQAREAEQKWRAY 144
Score = 29.6 bits (67), Expect = 7.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 917 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
R R R RRR R +R R++ R ++ R
Sbjct: 111 RFRVRERRRHRSAIAFQRYSRQQAREAEQKWRAY 144
Score = 29.6 bits (67), Expect = 7.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 951
R R R RRR R +R R++ R ++ R
Sbjct: 111 RFRVRERRRHRSAIAFQRYSRQQAREAEQKWRAY 144
Score = 29.6 bits (67), Expect = 7.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 952
R R R RRR R +R R++ R ++ R
Sbjct: 111 RFRVRERRRHRSAIAFQRYSRQQAREAEQKWRAY 144
Score = 29.6 bits (67), Expect = 7.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R R R RRR R +R R++ R ++ R
Sbjct: 111 RFRVRERRRHRSAIAFQRYSRQQAREAEQKWRAY 144
Score = 29.6 bits (67), Expect = 7.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 921 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
R R R RRR R +R R++ R ++ R
Sbjct: 111 RFRVRERRRHRSAIAFQRYSRQQAREAEQKWRAY 144
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA synthase
complex, beta subunit. Nomenclature follows the
description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 31.4 bits (71), Expect = 3.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
EE K + +K K+K K+ ++ +E+E EE++E + EE E
Sbjct: 375 EEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEM 422
>gnl|CDD|191022 pfam04538, BEX, Brain expressed X-linked like family. This is a
family of transcription elongation factors which includes
those referred to as Bex proteins as well as those named
TCEAL7. Bex1 was shown to be a novel link between
neurotrophin signalling, the cell cycle, and neuronal
differentiation, suggesting it might function by
coordinating internal cellular states with the ability of
cells to respond to external signals. TCEAL7 has been
shown negatively to regulate the NF-kappaB pathway, hence
being important in ovarian cancer as it one of the genes
frequently downregulated in this cancer. A closely
related protein, TFIIS/TCEA, found in pfam07500 is
involved in transcription elongation and transcript
fidelity. TFIIS/TCEA promotes 3' endoribonuclease
activity of RNA polymerase II (pol II) and allows pol II
to bypass transcript pause or 'arrest' during elongation
process. It is thus possible that BEX is also acting in
this way.
Length = 97
Score = 29.2 bits (66), Expect = 3.0
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
EK +E E K + + +EE+E+ +E E K+ E RRR+RR
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRRRLRR 43
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain is
specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 30.0 bits (68), Expect = 3.0
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 16/75 (21%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEE------------KKKKKK 1001
R G + ++EE + ++ ++ + EG + E+EE +++KK+
Sbjct: 26 RDGVDIDDEEDEDPKRYQDGDN----EGLFSDGKYDDEDEEADRIYESIDERMDERRKKR 81
Query: 1002 EEEKEEEEKKEEEEK 1016
E+KE+EE ++ E+
Sbjct: 82 REQKEKEEIEKYREE 96
Score = 28.8 bits (65), Expect = 6.7
Identities = 17/75 (22%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE-EEKKKKKKEEEKEEEEKK 1011
R ++EE++ + + + E +GK E+++ + E ++ E K+ E+K
Sbjct: 26 RDGVDIDDEEDEDPKRYQDGDNEGLFSDGKYDDEDEEADRIYESIDERMDERRKKRREQK 85
Query: 1012 EEEEKEEEEKKRRRI 1026
E+EE E+ ++ +I
Sbjct: 86 EKEEIEKYREENPKI 100
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 31.5 bits (72), Expect = 3.0
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
E++KKE++ K E E K G K EK K+ E + +
Sbjct: 763 NYTEKQKKEKESKSELEALKGVG-AKTAEKLKDAGVETVTDLTAADPDA 810
Score = 31.5 bits (72), Expect = 3.1
Identities = 13/71 (18%), Positives = 24/71 (33%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
R G +E K E++KK++ + E K + +K K+ E
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLT 804
Query: 1013 EEEKEEEEKKR 1023
+ + K
Sbjct: 805 AADPDAVAAKV 815
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 29.2 bits (66), Expect = 3.0
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 979 KEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
K+ K + + E EK++++K E+KE+ EKK EEE +E
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
Score = 29.2 bits (66), Expect = 3.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
++E + E E+ E++K+E KKE+ +K+ EEE K+
Sbjct: 49 DYKDEPPPEPTETWLEKREREKRE---KKEKLEKKLEEELKE 87
Score = 28.4 bits (64), Expect = 5.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
+ K+E + E +K E++K E++EK +KK EEE +E
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
Score = 28.4 bits (64), Expect = 6.0
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 990 KEEEEEKKKKKKE--EEKEEEEKKEEEEKEEEEKKRR 1024
K+ ++E + E EK E EK+E++EK E++ +
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEE 84
Score = 28.0 bits (63), Expect = 7.8
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 971 KEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
K+ +++ E EK+ E EK++KK++ EK+ EE+ +E
Sbjct: 48 KDYKDEPPPEPTETWLEKR---EREKREKKEKLEKKLEEELKE 87
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This family
consists of several eukaryotic proteins of unknown
function.
Length = 536
Score = 31.3 bits (71), Expect = 3.0
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+ EE+ K+ E + E +++ E ++ EE E + K K+ E E ++E E+
Sbjct: 259 DTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNE-ELTTVRQENEEL 317
Query: 1018 EEEKK 1022
EEE K
Sbjct: 318 EEEYK 322
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 31.1 bits (70), Expect = 3.0
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
EE + EK++ EK K++ ++KK E K K+ +K + +E+EK E +
Sbjct: 210 SLEELDREKQRREKMKDDRKEKKLEKKIKELRRKTRTSNYSRMDVREKEKHVHVFDEFVD 269
Query: 1016 KEEEE 1020
E
Sbjct: 270 GPNEP 274
>gnl|CDD|222914 PHA02666, PHA02666, hypothetical protein; Provisional.
Length = 287
Score = 31.1 bits (69), Expect = 3.1
Identities = 23/134 (17%), Positives = 35/134 (26%), Gaps = 10/134 (7%)
Query: 889 EKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRR----------RR 938
E K G G RRR+ SRR+ R R+ R R R
Sbjct: 14 EIWKTMRGDGHHESCFHHRRRANSMESRRKSRPSRQHRSAERTPTTASSLTHENNTAPSR 73
Query: 939 RRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKK 998
++ + R G + ++ K + + + E
Sbjct: 74 HGKQHSCKASSRSSHNRGSTSSSHNHHAHRGPHQSAHRRSKHDAVRDTYQPCPQSPETDL 133
Query: 999 KKKEEEKEEEEKKE 1012
K E E E
Sbjct: 134 YKGRLPGETERHYE 147
>gnl|CDD|216985 pfam02349, MSG, Major surface glycoprotein. This is a novel repeat
in Pneumocystis carinii Major surface glycoprotein (MSG)
some members of the alignment have up to nine repeats of
this family, the repeats containing several conserved
cysteines. The MSG of P. carinii is an important protein
in host-pathogen interactions. Surface glycoprotein A
from Pneumocystis carinii is a main target for the host
immune system, this protein is implicated in the
attachment of Pneumocystis carinii to the host alveolar
epithelial cells, alveolar macrophages, host surfactant
and possibly accounts in part for the hypoxia seen in
Pneumocystis carinii pneumonia (PCP).
Length = 81
Score = 28.9 bits (65), Expect = 3.1
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
K+ + EEK KE ++ E ++ +K EK KE+ + KK K EE +E K E +K
Sbjct: 1 KDFKLEEKCKELEEYCEFLEEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKK 60
Query: 1017 EEEEKK 1022
+++ KK
Sbjct: 61 KKKCKK 66
Score = 27.4 bits (61), Expect = 9.3
Identities = 17/67 (25%), Positives = 37/67 (55%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+E E ++ KE+ EK K++ K++ K EE K+ K + ++K++ +K +E+
Sbjct: 13 EEYCEFLEEACPLLKEKCEKLKEKCYKLKKDLKLEELLLKELKGELKKKKKCKKALKEKC 72
Query: 1017 EEEEKKR 1023
+ +K+
Sbjct: 73 TKLKKES 79
>gnl|CDD|224400 COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 774
Score = 31.3 bits (71), Expect = 3.2
Identities = 35/189 (18%), Positives = 53/189 (28%), Gaps = 20/189 (10%)
Query: 842 RRRGKKEEEKKKKKEEEEEGGEKE------------EEEGGGGGGRRRRRRRRSGKEEEE 889
R E + EE E E E EEG +RR E+
Sbjct: 493 WRVANVSERVESSVEELIETREGEVIDELVKKKDEFVEEGLSL-----AKRRGKPPEDHV 547
Query: 890 KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 949
K G + R + +RR RR
Sbjct: 548 LFFKAGD--VNVAEIPQELRDTPEYKLEVIVDKDVKRRLLELLLGFIASGRRTYSNTVLV 605
Query: 950 RRRRRSGKEEEEEEKKKEEKKKEE-EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
EEE + E + K+K K ++ ++ E E +K +K E EE
Sbjct: 606 EYEAEEILSILEEETARVLACDEVMKTIKEKYKKYGEDVEEISENEVRKIGEKAVEDLEE 665
Query: 1009 EKKEEEEKE 1017
+ K+ +
Sbjct: 666 QFKDSFGRV 674
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 29.6 bits (67), Expect = 3.2
Identities = 12/56 (21%), Positives = 30/56 (53%)
Query: 965 KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
+E +E ++K K KK+ +++ +++ +EE+ EE++++EE+
Sbjct: 72 PVDEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEED 127
>gnl|CDD|187805 cd09674, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily
protein Cas6f. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas6f is an endoribonuclease that generates crRNA; This
family is specific for CRISPR/Cas system I-F subtype;
Possesses RRM fold; also known as Csy4 family.
Length = 186
Score = 30.5 bits (69), Expect = 3.3
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE 972
R RR++ + R RRR R +EE + + K
Sbjct: 96 VRTVRRKQTKSSAARLRRRLERRQGINDEEARPRAPDKTT 135
Score = 29.3 bits (66), Expect = 7.8
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 945
S R RR++ + R RRR RR+ R R
Sbjct: 94 SHVRTVRRKQTKSSAARLRRRLERRQGINDEEARPR 129
>gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated.
Length = 228
Score = 30.6 bits (69), Expect = 3.3
Identities = 11/64 (17%), Positives = 36/64 (56%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E EEE +K+ ++ ++K + + +++++ E E+++ + E+ +E +++ ++
Sbjct: 30 VEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEI 89
Query: 1018 EEEK 1021
E +
Sbjct: 90 EAAR 93
Score = 30.2 bits (68), Expect = 5.0
Identities = 16/73 (21%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE---EEKEEEEKKEE 1013
+ EEE +K EE +++ K+ + ++E++K E E ++ +E E +++ K+ E
Sbjct: 31 EVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIE 90
Query: 1014 EEKEEEEKKRRRI 1026
+++ +K+++
Sbjct: 91 AARQQFQKEQQET 103
>gnl|CDD|235828 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase;
Validated.
Length = 953
Score = 31.5 bits (72), Expect = 3.3
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
KK+K+++E E + E K +E +K R +RR+
Sbjct: 702 SKKEKEDKEAEAAAEAELLAKVKELQKYRPVRRR 735
Score = 29.9 bits (68), Expect = 9.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 997 KKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
KK+KE+++ E + E + +E ++ R R+R
Sbjct: 702 SKKEKEDKEAEAAAEAELLAKVKELQKYRPVRRR 735
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional.
Length = 643
Score = 31.3 bits (71), Expect = 3.3
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query: 942 RRRRRRRRRRRRRSGKEEEEEEKKKEEKK------KEEEEKKKKEG----KTKKE--EKK 989
R++RR R+ G +E K+ + +E E + G KK+ E+
Sbjct: 50 SSAGRKKRRERQDDGDDEPVSPKRIAIDEVKGMTVRELREAASERGLATTGRKKDLLERL 109
Query: 990 KEEEEEKKKKKKEEEKEEEEKKEE--EEKEEEEK 1021
E K E+EK++ EE+E+EEK
Sbjct: 110 CAALESDVKVGSANGTGEDEKEKGGDEEREKEEK 143
>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription
factors and mRNA splicing factors [Transcription / RNA
processing and modification / Cell division and
chromosome partitioning].
Length = 512
Score = 31.3 bits (71), Expect = 3.3
Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 19/228 (8%)
Query: 819 RRRRRRKKKEEKKKWKRRGGGRRRR--RGKKEEEKKKKKEEEEEGGE------KEEEEGG 870
RR + E ++ R R R R K + K ++K EE KE +
Sbjct: 145 ARRPDIYEDELLEREVNREASYRLRVPRVSKADVKPREKGEENNPDIEDLQEMKELKSAS 204
Query: 871 GGGGRRRRRRRRS----GKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRR 926
+ K E ++E + ++ +++ R S R +
Sbjct: 205 ITRHLILPSKSEINKAFKKGETLALEQEINEYKEKKGLSRKQFCERIWSTDRDEDKFWPN 264
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKE 986
++ R ++ + RR+ +R +EEE+E K + + + +
Sbjct: 265 IYKKLPYRDKKSIYKHLRRKYNIFEQRGKWTKEEEQELAKLVVEHGGSWTEIGKLLGRMP 324
Query: 987 EKKKEE-------EEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIR 1027
++ + K+ + E+EE K E E ++ RI
Sbjct: 325 NDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVNEMRLEAQQSSRIL 372
>gnl|CDD|235263 PRK04243, PRK04243, 50S ribosomal protein L15e; Validated.
Length = 196
Score = 30.3 bits (69), Expect = 3.3
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 813 SRNRRGRRRRRRKKKEEKKKWKRRGGGRRRR 843
S ++GR R++ K EK + R RR +
Sbjct: 166 SAGKKGRGLRKKGKGTEKVRPSIRANERRGK 196
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease.
Endonuclease that cleaves the 5'-overhanging flap
structure that is generated by displacement synthesis
when DNA polymerase encounters the 5'-end of a downstream
Okazaki fragment. Has 5'-endo-/exonuclease and
5'-pseudo-Y-endonuclease activities. Cleaves the junction
between single and double-stranded regions of flap DNA.
Length = 338
Score = 31.1 bits (71), Expect = 3.4
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
E K E EE+++ ++E E++ EE E+ + EE K +R R
Sbjct: 85 ELKAETLEERREIREEAEEKWEEALEKGDLEEARKYAQRSSR 126
>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0)
(base unit) of the ATP synthase. The base unit is thought
to translocate protons through membrane (inner membrane
in mitochondria, thylakoid membrane in plants,
cytoplasmic membrane in bacteria). The B subunits are
thought to interact with the stalk of the CF(1) subunits.
This domain should not be confused with the ab CF(1)
proteins (in the head of the ATP synthase) which are
found in pfam00006.
Length = 132
Score = 29.5 bits (67), Expect = 3.4
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK--------KEEKKKEEEEEKKKKK 1000
R+ + + +E EE K+ E E++ + + + K+E +K +EE + +
Sbjct: 31 RKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQKLKEEILAEAQ 90
Query: 1001 KEEEKEEEEKKEEEEKEEEE 1020
K+ E+ E + E E+E+E+
Sbjct: 91 KDAERLLESARAEIEQEKEQ 110
Score = 29.5 bits (67), Expect = 3.7
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
KE+ K+ E++ ++ E + + + + E E KKE +K +EE E +K
Sbjct: 32 KEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKKEAQKLKEEILAEAQK 91
Query: 1017 E---EEEKKRRRIRRKR 1030
+ E R I +++
Sbjct: 92 DAERLLESARAEIEQEK 108
>gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional.
Length = 250
Score = 30.6 bits (69), Expect = 3.4
Identities = 13/81 (16%), Positives = 44/81 (54%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
++R++R R E+ ++E +E ++ ++++ ++ + + +E +E+++ E
Sbjct: 35 KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNE 94
Query: 1004 EKEEEEKKEEEEKEEEEKKRR 1024
+E+ +E E+ E++++
Sbjct: 95 AREDVATARDEWLEQLEREKQ 115
>gnl|CDD|218715 pfam05719, GPP34, Golgi phosphoprotein 3 (GPP34). This family
consists of several eukaryotic GPP34 like proteins.
GPP34 localises to the Golgi complex and is conserved
from yeast to humans. The cytosolic-ally exposed
location of GPP34 predict a role for a novel coat
protein in Golgi trafficking.
Length = 205
Score = 30.4 bits (69), Expect = 3.4
Identities = 13/55 (23%), Positives = 14/55 (25%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
R R R R R RR +RR R R R R
Sbjct: 82 ERLSGRGLRERVAAGLVARGILRREKRRFLGLFPTTRYPLVDPAAEAALRARLRA 136
Score = 29.6 bits (67), Expect = 7.5
Identities = 12/55 (21%), Positives = 15/55 (27%)
Query: 901 RRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRS 955
R + R R R RR +RR R R R R+
Sbjct: 82 ERLSGRGLRERVAAGLVARGILRREKRRFLGLFPTTRYPLVDPAAEAALRARLRA 136
>gnl|CDD|234279 TIGR03607, TIGR03607, patatin-related protein. This bacterial
protein family contains an N-terminal patatin domain,
where patatins are plant storage proteins capable of
phospholipase activity (see pfam01734). Regions of
strong sequence conservation are separated by regions of
significant sequence and length variability. Members of
the family are distributed sporadically among bacteria.
The function is unknown [Unknown function, General].
Length = 739
Score = 31.3 bits (71), Expect = 3.4
Identities = 13/56 (23%), Positives = 17/56 (30%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
RR +RR R R RR R R R R+ ++ E
Sbjct: 355 RRHNRRVRRLRAIVDARRPEVARLVEALFGRTLLESPTPELLDAYRLRALEQAAER 410
Score = 29.7 bits (67), Expect = 9.3
Identities = 13/55 (23%), Positives = 14/55 (25%)
Query: 909 RSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
R RR RR R RR R R R E+ E
Sbjct: 355 RRHNRRVRRLRAIVDARRPEVARLVEALFGRTLLESPTPELLDAYRLRALEQAAE 409
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents the
N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 29.1 bits (66), Expect = 3.4
Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKK-EEKKKEEEE-EKKKKKKEEEKEEEEKKEEEEKE 1017
E +E+++E + + EE + ++ +K+ + KK++E+ E + +E K+E + E E +E
Sbjct: 33 ELDEERRELQVELEELQAERNELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAELRE 92
Query: 1018 EEEK 1021
E +
Sbjct: 93 LEAE 96
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 30.8 bits (70), Expect = 3.5
Identities = 19/67 (28%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Query: 958 EEEEEEKKKEEKKKEEEE---KKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+E ++K + K K E E +++ + E+ ++EEEE+ + ++E++E+E+++EEE
Sbjct: 253 KEVIKKKGGDFKVKGEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEE 312
Query: 1015 EKEEEEK 1021
+ +E +K
Sbjct: 313 DDDEGDK 319
>gnl|CDD|184859 PRK14857, tatA, twin arginine translocase protein A; Provisional.
Length = 90
Score = 28.9 bits (65), Expect = 3.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 981 GKTKK--EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
GKT K +E KE E E K++ E E+E + E E + E
Sbjct: 35 GKTLKGFQEASKEFENEIKREMAEPEQEVKAPAELESNQTNE 76
>gnl|CDD|220839 pfam10661, EssA, WXG100 protein secretion system (Wss), protein EssA.
The WXG100 protein secretion system (Wss) is responsible
for the secretion of WXG100 proteins (pfam06013) such as
ESAT-6 and CFP-10 in Mycobacterium tuberculosis or EsxA
and EsxB in Staphylococcus aureus. In S. aureus, the Wss
seems to be encoded by a locus of eight CDS, called ess
(eSAT-6 secretion system). This locus encodes, amongst
several other proteins, EssA, a protein predicted to
possess one transmembrane domain. Due to its predicted
membrane location and its absolute requirement for WXG100
protein secretion, it has been speculated that EssA could
form a secretion apparatus in conjunction with the
polytopic membrane protein EsaA, YukC (pfam10140) and
YukAB, which is a membrane-bound ATPase containing
Ftsk/SpoIIIE domains (pfam01580) called EssC in S. aureus
and Snm1/Snm2 in Mycobacterium tuberculosis. Proteins
homologous to EssA, YukC, EsaA and YukD seem absent from
mycobacteria.
Length = 145
Score = 29.8 bits (67), Expect = 3.5
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKE---GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
++ ++EK +++ ++ E +K E +T++E KK+ E+K+ + E E+K+
Sbjct: 23 QKTDQEKNEKKLRETELDKLGIELFTTETEEEINKKKNAEQKEMEDIENSLFSEDKEGNV 82
Query: 1015 EKEEEEKK 1022
+E +
Sbjct: 83 AVKETKDS 90
Score = 29.1 bits (65), Expect = 6.1
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK-------EEEEKKEEEEKEEEEKKRRRI 1026
E+ K + K + +K +E+ EKK ++ E +K E E++ ++K E+K+ I
Sbjct: 10 EDDGKMQFKVDRLQKTDQEKNEKKLRETELDKLGIELFTTETEEEINKKKNAEQKEMEDI 69
Query: 1027 R 1027
Sbjct: 70 E 70
>gnl|CDD|147051 pfam04698, MOBP_C-Myrip, Myelin-associated oligodendrocytic basic
protein (MOBP). MOBP is abundantly expressed in central
nervous system myelin, and shares several characteristics
with myelin basic protein (MBP), in terms of regional
distribution and function. This family is the middle and
C-terminal regions of MOBP which has been shown to be
essential for normal arrangement of the radial component
in central nervous system myelin. Most member-proteins
carry a FVHE-PHD type zinc-finger at their N-terminus.
Length = 710
Score = 31.3 bits (70), Expect = 3.5
Identities = 26/100 (26%), Positives = 34/100 (34%), Gaps = 17/100 (17%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKK-----------------EEKKKEEEEKKKKEGKT 983
RR RR RR R G EE +E E E + +
Sbjct: 369 HTADRRARRWRRARLGPEEPNKELPSPGAHLRALDTAQVSDDLSETDISNEAQDPQSLTD 428
Query: 984 KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
EEK + E K E+E E +E E K E E ++
Sbjct: 429 STEEKLRNRLYELAMKMSEKETSSGEDQESEPKAEPENQK 468
Score = 30.2 bits (67), Expect = 7.8
Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 1/132 (0%)
Query: 859 EEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRR 918
E + EE RR RR RR+ EE K+ G R + S S
Sbjct: 357 ETSDSSDPEEALHTADRRARRWRRARLGPEEPNKELPSPGAHLRALDTAQVSDDL-SETD 415
Query: 919 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
+ + + R R + + SG+++E E K + E +KE +
Sbjct: 416 ISNEAQDPQSLTDSTEEKLRNRLYELAMKMSEKETSSGEDQESEPKAEPENQKESLSSED 475
Query: 979 KEGKTKKEEKKK 990
++E KKK
Sbjct: 476 NNQGVQEELKKK 487
>gnl|CDD|223010 PHA03215, PHA03215, nuclear protein UL24; Provisional.
Length = 262
Score = 30.6 bits (69), Expect = 3.6
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 931 RRRRRRRRRRRRRRRRRRRRRRRRSG 956
R RR RRR RR R RRR R +G
Sbjct: 194 RTTRRGRRRGARRPRSRRRPRGGAAG 219
Score = 29.5 bits (66), Expect = 7.6
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 915 SRRRRRRRRRRRRRRRRRRRRRR 937
R RR RRR RR R RRR R
Sbjct: 193 PRTTRRGRRRGARRPRSRRRPRG 215
Score = 29.5 bits (66), Expect = 8.4
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRR 935
R+ RR RRR RR R RRR R
Sbjct: 194 RTTRRGRRRGARRPRSRRRPRG 215
>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G. This
model describes the vacuolar ATP synthase G subunit in
eukaryotes and includes members from diverse groups e.g.,
fungi, plants, parasites etc. V-ATPases are multi-subunit
enzymes composed of two functional domains: A
transmembrane Vo domain and a peripheral catalytic domain
V1. The G subunit is one of the subunits of the catalytic
domain. V-ATPases are responsible for the acidification
of endosomes and lysosomes, which are part of the central
vacuolar system [Energy metabolism, ATP-proton motive
force interconversion].
Length = 113
Score = 29.4 bits (66), Expect = 3.6
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEK---KEEEEKEEE 1019
EK+ EK E ++K K K KEE +KE E+ K++++KE ++ E + E++ E
Sbjct: 15 EKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAE 74
Query: 1020 EKKRRRIR 1027
+ + +IR
Sbjct: 75 AETQAKIR 82
Score = 28.6 bits (64), Expect = 6.0
Identities = 17/69 (24%), Positives = 39/69 (56%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
R+R+ +R + KEE ++E +K ++++E+E K+ + +E+ E + + K E K
Sbjct: 26 RKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQAKIREIK 85
Query: 1006 EEEEKKEEE 1014
+ +K ++
Sbjct: 86 KAVQKNKDA 94
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins. OPA3
deficiency causes type III 3-methylglutaconic aciduria
(MGA) in humans. This disease manifests with early
bilateral optic atrophy, spasticity, extrapyramidal
dysfunction, ataxia, and cognitive deficits, but normal
longevity.
Length = 134
Score = 29.5 bits (67), Expect = 3.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
++E KKEEE +++ ++ E E E + E +K
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 28.8 bits (65), Expect = 7.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
KKEE+ ++E EE + + E E E E +K
Sbjct: 104 AKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|145463 pfam02323, ELH, Egg-laying hormone precursor. This family consists
of egg-laying hormone (ELH) precursor and atrial gland
peptides form little and California sea hare. The family
also includes ovulation prohormone precursor from great
pond snail. This family thus represents a conserved
gastropoda ovulation and egg production prohormone. Note
that many of the proteins present are further cleaved to
give individual peptides. Neuropeptidergic bag cells of
the marine mollusk Aplysia californica synthesise an
egg-laying hormone (ELH) precursor protein which is
cleaved to generate several bioactive peptides including
ELH, bag cell peptides (BCP) and acidic peptide (AP).
Length = 255
Score = 30.5 bits (68), Expect = 3.6
Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 17/119 (14%)
Query: 868 EGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRR 927
G R + ++ + G K+R R +RR R +RR+R +R
Sbjct: 52 LSPEDSGSNRPQPVYGEAFDKSSADYDDGSDDSSSNEKRRLRFHKRRLRFNKRRQRASKR 111
Query: 928 RRRRRRRRR-----------------RRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEK 969
R R +RR +R R R R R+R +G EE+ E + E +
Sbjct: 112 RLRFHKRRSDSADENSPFDLSNEDGAQRDLRAPRLRFYSLRKRAAGAEEQSEGQNPETE 170
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 31.0 bits (70), Expect = 3.7
Identities = 10/62 (16%), Positives = 31/62 (50%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
+ E++ ++K + E+ + + K+ + K E EE+++ +K ++ + K+ +
Sbjct: 367 EIEQKLAQEKAQLDAAVEKGELTPEQAKQIARAKLEPEERERLEKIDKAQAALKQAQSAF 426
Query: 1017 EE 1018
+
Sbjct: 427 DL 428
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome, requires
the ordered recruitment of Slu7, Prp18, and Prp22 to the
spliceosome. There is a close functional relationship
between Prp8, Prp18, and Slu7, and Prp18 interacts with
Slu7, so that together they recruit Prp22 to the
spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 30.5 bits (69), Expect = 3.7
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 970 KKEEEEKKKKEGKTKKE--EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
KKE+E+K++ + + K+ EK EE K K+ + E+ E + +++K +
Sbjct: 163 KKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYVEYDRAGKKKKAK 218
Score = 30.1 bits (68), Expect = 4.6
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 985 KEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK---EEEEKKRRRIRRK 1029
+E +K EE +K K KKE++ ++ + ++E+E+ +E + + +
Sbjct: 24 EEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESDMGDSDSKTR 71
Score = 29.7 bits (67), Expect = 6.5
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
E +K+ K KKE+ K ++++ +K EE ++ KE + E
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSE 203
Score = 29.3 bits (66), Expect = 9.6
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
TK E +K+E+E+K++ K ++++ EK EE ++ K
Sbjct: 156 TKLELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPK 195
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 31.1 bits (70), Expect = 3.7
Identities = 14/70 (20%), Positives = 33/70 (47%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E EEE + E +E ++ ++ ++ + + E+E + EE+ E+ ++ E +
Sbjct: 931 SDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKA 990
Query: 1016 KEEEEKKRRR 1025
+ +RR
Sbjct: 991 AYDSRPGKRR 1000
Score = 31.1 bits (70), Expect = 3.8
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 956 GKEEEEEEK-KKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
G+++E E ++K + +K ++K ++ +E E +KK+ E +KE +K EE
Sbjct: 430 GEDDETPEYLTLQDKAPDFLDKTISSHRSKFRDETREHELNARKKRVEHQKELLDKIIEE 489
>gnl|CDD|218883 pfam06075, DUF936, Plant protein of unknown function (DUF936). This
family consists of several hypothetical proteins from
Arabidopsis thaliana and Oryza sativa. The function of
this family is unknown.
Length = 564
Score = 31.0 bits (70), Expect = 3.8
Identities = 22/166 (13%), Positives = 41/166 (24%)
Query: 847 KEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKK 906
+ +K + R RS E + R
Sbjct: 132 IKRKKASSAPRRGSWDSSSKSASIDSSPTVIGPRPRSFSELNLTDRTPAKVRSSRSELGA 191
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
S RR RR R R++ R+ R S + +
Sbjct: 192 PSPSGGTSCPSSSGGRRSSIGSRRLRGSASLRKKVAVLSAPRKPGSRSSDCKSSPRARSS 251
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
K + ++K K + + ++ K K E ++ +
Sbjct: 252 SAKSPFKSSIQRKATKALSKLSLRASPKDTSKSSKSEVAPPKKSEA 297
>gnl|CDD|235190 PRK03991, PRK03991, threonyl-tRNA synthetase; Validated.
Length = 613
Score = 31.0 bits (71), Expect = 3.8
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 954 RSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK--KKEEEKEEEEKK 1011
R+ + E E +K+EE+ + +G+ E+ E K E K+E
Sbjct: 136 RTIRPEVSEAEKEEEEIESYWYILTPDGELHDPEEFDFSGYEDLKALVDYEVGKKELVGG 195
Query: 1012 E 1012
E
Sbjct: 196 E 196
>gnl|CDD|177795 PLN00205, PLN00205, ribisomal protein L13 family protein;
Provisional.
Length = 191
Score = 30.2 bits (68), Expect = 3.8
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 20/83 (24%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRR--------------------RRRRRRRRRRRRRRRRRR 946
R+ R R R R R R+ R R+ R R R RR R
Sbjct: 104 RKAVLRMLPRNRLRDDRDRKLRIFAGSEHPFGDKPLEPFVMPPRQVREMRPRARRAMIRA 163
Query: 947 RRRRRRRRSGKEEEEEEKKKEEK 969
+++ +R E+ + KKKE +
Sbjct: 164 QKKAEQREQAANEKRKGKKKEVE 186
Score = 29.8 bits (67), Expect = 5.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 933 RRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEE 975
R+ R R R RR R +++ +E+ EK+K +KK+ E E
Sbjct: 146 PRQVREMRPRARRAMIRAQKKAEQREQAANEKRKGKKKEVEVE 188
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 31.1 bits (71), Expect = 3.8
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
E K+ ++ K K + G + E + E+EE +K + E+ +++EEE
Sbjct: 824 ERYKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEEL 879
Score = 31.1 bits (71), Expect = 4.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 973 EEEKKKKEGKT---KKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
+E KK +G K E E E + +K+E EK E E+ EE+E+
Sbjct: 826 YKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEE 877
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 31.1 bits (70), Expect = 3.8
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 962 EEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
+E+K + + + K+E K KK + EK++ + + E + E + EE EEEK
Sbjct: 342 DEEKARKYWEANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDAE--DIEEAIEEEK 399
Query: 1022 KRRRI 1026
+ I
Sbjct: 400 NQSEI 404
Score = 30.0 bits (67), Expect = 7.5
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Query: 956 GKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+ +E + E E + K+EK+K EE+ K E +++ E+E
Sbjct: 82 DNVVADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQ---KIAPEIPVKQQIDSEKE 138
Query: 1016 K 1016
+
Sbjct: 139 R 139
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 31.1 bits (70), Expect = 3.9
Identities = 37/232 (15%), Positives = 72/232 (31%), Gaps = 9/232 (3%)
Query: 798 KAPEGGKVCITQIRLSRNRRGRRRRRRKKKEEKKKWKRRGGGRRRRRGKKEEEKKKKKEE 857
K Q ++ + RR + K + + + +K++ KK ++
Sbjct: 181 NKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNTNDKNKEKNK-EKDKNIKKDRDG 239
Query: 858 EEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRR 917
+++ E+ R R KE ++ +K G R K++ + R+ S
Sbjct: 240 DKQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEKNVVSGIRSSVLLKRKSQCLRKDSYV 299
Query: 918 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR-----RRRRRSGKEEEEEEKKKEEKKKE 972
+++ + + R R S + KK+ K
Sbjct: 300 YSNHQKKAKTGDPKNIIHRNNGSSNSNNDDTSSSNHLGSNRISNRNPSSPYKKQTTTKHT 359
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEK---KKKKKEEEKEEEEKKEEEEKEEEEK 1021
K K KTK +K K+ E++ + EK E K
Sbjct: 360 NNTKNNKYNKTKTTQKFNHPLRHHATINKRSSMLPMSEQKGRGASEKSEYIK 411
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 28.3 bits (64), Expect = 4.0
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 977 KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
KK++ K K+ ++ KK +K++ K ++ E+ KE +R IR KR
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEIRLKR 57
>gnl|CDD|223068 PHA03384, PHA03384, early DNA-binding protein E2A; Provisional.
Length = 445
Score = 30.8 bits (70), Expect = 4.0
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 946 RRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEK 1005
+++ RRR S EEEEE EEE + G + + ++ K+ + +E+
Sbjct: 27 PKKKGRRRVSPVEEEEE---------EEEAEVVAVGFSYPPVRISRGKDGKRPVRPLKEE 77
Query: 1006 EEEEKKEEEE 1015
++ EKK E
Sbjct: 78 KDSEKKASTE 87
Score = 29.7 bits (67), Expect = 9.8
Identities = 14/75 (18%), Positives = 31/75 (41%)
Query: 948 RRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
+++ RR EEEE+++E + ++ ++ K+ K++K E++
Sbjct: 27 PKKKGRRRVSPVEEEEEEEEAEVVAVGFSYPPVRISRGKDGKRPVRPLKEEKDSEKKAST 86
Query: 1008 EEKKEEEEKEEEEKK 1022
E + E K
Sbjct: 87 EAAVRNPLSDPLESK 101
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 27.3 bits (61), Expect = 4.1
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEK 1010
EE+K+E+EEE + +++ EE+ E ++
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 27.3 bits (61), Expect = 4.5
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 999 KKKEEEKEEEEKKEEEEKEEEEK 1021
+K+E+E+E E+++E EE+ E ++
Sbjct: 24 EKREDEEENEDEEEGEEQSEVKR 46
Score = 27.3 bits (61), Expect = 4.7
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 1002 EEEKEEEEKKEEEEKEEEEKK 1022
EEEK E+E++ E+E+E EE+
Sbjct: 22 EEEKREDEEENEDEEEGEEQS 42
>gnl|CDD|171510 PRK12452, PRK12452, cardiolipin synthetase; Reviewed.
Length = 509
Score = 30.7 bits (69), Expect = 4.2
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 914 RSRRRRRRRRRRRRRRRRRRRRRRRRRR 941
RSR RR++ R +R+ R RR
Sbjct: 81 RSRWRRKKHLHRSEEQRKLFREILEGRR 108
Score = 30.7 bits (69), Expect = 4.8
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 924 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
R R RR++ R +R+ R RR S K
Sbjct: 81 RSRWRRKKHLHRSEEQRKLFREILEGRRLELSLKVP 116
>gnl|CDD|220714 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-binding protein.
Kin17_mid is the conserved central 169 residue region of
a family of Kin17 proteins. Towards the N-terminal end
there is a zinc-finger domain, and in human and mouse
members there is a RecA-like domain further downstream.
The Kin17 protein in humans forms intra-nuclear foci
during cell proliferation and is re-distributed in the
nucleoplasm during the cell cycle.
Length = 127
Score = 29.5 bits (67), Expect = 4.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 1001 KEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
+ +EE KKE++EK +EE++++ +
Sbjct: 97 ALKRQEELRKKEKQEKTDEEREQKLLEE 124
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part of
a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 30.4 bits (69), Expect = 4.3
Identities = 13/71 (18%), Positives = 42/71 (59%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+ E + + + ++ +K+ K ++K+K +E K++K++E++ ++ E++ E ++E
Sbjct: 150 LDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQRE 209
Query: 1018 EEEKKRRRIRR 1028
+K + + ++
Sbjct: 210 LMKKGKGKKKK 220
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 30.7 bits (69), Expect = 4.3
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 19/60 (31%)
Query: 981 GKTKKEEKKKEE------EEEKKKKKKEEEK-------------EEEEKKEEEEKEEEEK 1021
GKT +E K EEK+ K++ +E+ E +E++EEEE EEEE+
Sbjct: 290 GKTFQEMVKVAAKDLILGGEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
>gnl|CDD|216602 pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins
are necessary for efficient DNA transposition. This
domain is a member of the DDE superfamily, which contain
three carboxylate residues that are believed to be
responsible for coordinating metal ions needed for
catalysis. The catalytic activity of this enzyme
involves DNA cleavage at a specific site followed by a
strand transfer reaction. This family contains
transposases for IS4, IS421, IS5377, IS427, IS402,
IS1355, IS5, which was original isolated in
bacteriophage lambda.
Length = 194
Score = 30.3 bits (68), Expect = 4.4
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 903 RRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
R KK ++ ++ R + + +R R +R +++R R R R E
Sbjct: 103 RLKKNQKLLKKAFRNYFAKVGLKSKRYRVVLKREQKKRGFELRYNLLLYRLRWQIE 158
>gnl|CDD|224321 COG1403, McrA, Restriction endonuclease [Defense mechanisms].
Length = 146
Score = 29.5 bits (66), Expect = 4.4
Identities = 10/52 (19%), Positives = 15/52 (28%)
Query: 899 RRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 950
+R K S + RR +R +R + RR R
Sbjct: 16 LVSQRAKHVAEYPCLASESKDLRRPSVTDLTGESKRPSEKRPAKTRRAVLLR 67
>gnl|CDD|218127 pfam04522, DUF585, Protein of unknown function (DUF585). This
region represents the N terminus of bromovirus 2a
protein, and is always found N terminal to a predicted
RNA-dependent RNA polymerase region (pfam00978).
Length = 248
Score = 30.2 bits (68), Expect = 4.5
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 142 VLKRQEDDWIDDDGGDGYVEDGREIFDDDIEDVPQKKEKHDKRKKNKNIQNPNAKDDSLP 201
V + + DDW +D DGY E F D +D+ Q E + +N + +
Sbjct: 117 VDESECDDWYPEDTSDGYG----EYFSADEDDIHQNSEDL---TEVLAEENGTLESEEAR 169
Query: 202 LATD 205
+D
Sbjct: 170 ETSD 173
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 30.6 bits (70), Expect = 4.5
Identities = 12/61 (19%), Positives = 28/61 (45%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
+E E + +++K ++ EG ++ K E+ K + E+ +E E ++E
Sbjct: 410 KEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELIDIEGDEE 469
Query: 1018 E 1018
+
Sbjct: 470 K 470
>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase.
Length = 644
Score = 30.6 bits (69), Expect = 4.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 897 GGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRR 930
G R K+ RRS+ R+ ++ R RRR R R
Sbjct: 2 GNGNSREAKESRRSKLRQKLQKFRIRRRHLRCSR 35
Score = 29.8 bits (67), Expect = 8.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRR 935
R RRS+ R++ ++ R RRR R R
Sbjct: 7 REAKESRRSKLRQKLQKFRIRRRHLRCSR 35
Score = 29.8 bits (67), Expect = 9.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 910 SRRRRSRRRRRRRRRRRRRRRRRRRRRRRR 939
SR + RR + R++ ++ R RRR R R
Sbjct: 6 SREAKESRRSKLRQKLQKFRIRRRHLRCSR 35
Score = 29.8 bits (67), Expect = 9.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRR 928
G G R + +R + R++ + R RRR R R
Sbjct: 2 GNGNSREAKESRRSKLRQKLQKFRIRRRHLRCSR 35
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 30.5 bits (69), Expect = 4.7
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRR 1028
E +++++ + + EE + + EEE K+E+EE+ E++R+R+ R
Sbjct: 97 ETQQEEKAVNPFTPQPGQREERRPTLESEEEWRARLKREQEEQYLRERQRQRMAR 151
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827). This
family consists of several plant proteins of unknown
function. Several sequences in this family are described
as being "myosin heavy chain-like".
Length = 484
Score = 30.7 bits (69), Expect = 4.7
Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 1/111 (0%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE 972
++ R + R + + + R + + ++ + EE +KE
Sbjct: 293 KKELEELREKEGEAEEAASSLEAELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKE 352
Query: 973 EEEKKKKEGKTKKE-EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E +++ K K+E E+ K E + + + KE E K E E K
Sbjct: 353 AEAAREELRKLKEEAEQTKAALETAELRLEAALKEAEAAKAAEALALAEIK 403
>gnl|CDD|211392 cd11380, Ribosomal_S8e_like, Eukaryotic/archaeal ribosomal protein
S8e and similar proteins. This family contains the
eukaryotic/archaeal ribosomal protein S8, a component of
the small ribosomal subunits, as well as the NSA2 gene
product.
Length = 138
Score = 29.4 bits (67), Expect = 4.7
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 890 KKKKEGGGGRRRRRRKKRRR--SRRRRSRRRRRRRRRRRRRRRRRRRRRRRRR 940
K+K GG + + RKKR+ R+ + + R R+ R R + R R
Sbjct: 6 KRKATGG--KFKVVRKKRKYELGRKPANTKLGGERFTRKVRVRGGNIKPRALR 56
>gnl|CDD|191511 pfam06409, NPIP, Nuclear pore complex interacting protein (NPIP).
This family consists of a series of primate specific
nuclear pore complex interacting protein (NPIP)
sequences. The function of this family is unknown but is
well conserved from African apes to humans.
Length = 350
Score = 30.5 bits (68), Expect = 4.8
Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 909 RSRRRRSRRRRRRRRRRRRR------RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEE 962
+ R RRS R R+ + R + R + + + + + +GK + +
Sbjct: 85 QQRARRSNRCRQEGIKIGLEDIFTLWRHVETKVRAKICKMKVTTKINHHDKINGKRKTAK 144
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
E ++ KE E +K+ ++ EE K + +E K+ ++ + ++ E+
Sbjct: 145 EHLRKLSMKECEHAEKERQVSEAEENGKLDMKEIHTYKEMFQRAQALRRRAED 197
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short Palindromic
Repeats) and associated Cas proteins comprise a system
for heritable host defense by prokaryotic cells against
phage and other foreign DNA; Multidomain protein with
permuted HD nuclease domain, palm domain and Zn-ribbon;
MTH326-like has inactivated polymerase catalytic domain;
alr1562 and slr7011 - predicted only on the basis of
size, presence of HD domain, and location with RAMPs in
one operon; signature gene for type III; also known as
Crm2 family.
Length = 475
Score = 30.5 bits (69), Expect = 4.9
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE---EEKK 1011
G EEE EE K+E +++ E K + E + + ++ ++ E E+++
Sbjct: 87 PGNEEEAEELKEEIEEETWESILNKVKEYLDIENVEPFLLKSDALERISDRIEDGNEDRE 146
Query: 1012 EEEEKEEEEKKRRRI 1026
E EE E K R
Sbjct: 147 EAEELEAARKNVRDF 161
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this family
are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone
system. All members of the seed alignment were taken from
completely sequenced bacterial or archaeal genomes and
(except for Mycoplasma sequence) found clustered with
other genes of this systems. This model excludes DnaK
homologs that are not DnaK itself, such as the heat shock
cognate protein HscA (TIGR01991). However, it is not
designed to distinguish among DnaK paralogs in
eukaryotes. Note that a number of dnaK genes have shadow
ORFs in the same reverse (relative to dnaK) reading
frame, a few of which have been assigned glutamate
dehydrogenase activity. The significance of this
observation is unclear; lengths of such shadow ORFs are
highly variable as if the presumptive protein product is
not conserved [Protein fate, Protein folding and
stabilization].
Length = 595
Score = 30.7 bits (70), Expect = 4.9
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEG---------------KTKKEEKKKEEEEEKKKKKKE 1002
EEE E KE + EE+KK+KE KT KE K EEK+K +K
Sbjct: 500 EEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGDKLPAEEKEKIEKA 559
Query: 1003 EEKEEEEKKEEEEKEEEEKK 1022
E +E + E+ EE + K
Sbjct: 560 VA-ELKEALKGEDVEEIKAK 578
>gnl|CDD|180574 PRK06461, PRK06461, single-stranded DNA-binding protein; Reviewed.
Length = 129
Score = 29.2 bits (66), Expect = 5.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 843 RRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRR 881
+ G E ++ E EE E+ E GGGGG R RR
Sbjct: 91 KYGSISESDDEEVPEAEEIPEETPEAPGGGGGFRGGGRR 129
>gnl|CDD|218516 pfam05235, CHAD, CHAD domain. The CHAD domain is an alpha-helical
domain functionally associated with the pfam01928
domains. It has conserved histidines that may chelate
metals.
Length = 227
Score = 30.0 bits (68), Expect = 5.0
Identities = 15/77 (19%), Positives = 22/77 (28%), Gaps = 13/77 (16%)
Query: 900 RRRRRKKRRRSRRR-RSRR------------RRRRRRRRRRRRRRRRRRRRRRRRRRRRR 946
RR + R RS R R +R RR R
Sbjct: 96 EARRARAREALLAALRSARYQRLLLALEAWLAAPPWLSAAAAAAPPLRDFAAKRLRRAYR 155
Query: 947 RRRRRRRRSGKEEEEEE 963
+ R+ R + ++EE
Sbjct: 156 KLRKALRALADDLDDEE 172
>gnl|CDD|150392 pfam09710, Trep_dent_lipo, Treponema clustered lipoprotein
(Trep_dent_lipo). This entry represents a family of six
predicted lipoproteins from a region of about 20 tandemly
arranged genes in the Treponema denticola genome. Two
other neighboring genes share the lipoprotein signal
peptide region but do not show more extensive homology.
The function of this locus is unknown.
Length = 394
Score = 30.7 bits (69), Expect = 5.1
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEE----EEKKEEEEKEEEEKKRRRIR 1027
E K+++E + K E K E +E + K E E E+ KE EEK+ E+ ++++
Sbjct: 21 EVKEQREMRIKVESSMKIEPKENEFLSKPEYDEHVKTPEQIKELEEKKAYEESLKQLQ 78
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 30.6 bits (69), Expect = 5.1
Identities = 12/82 (14%), Positives = 31/82 (37%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
RR++ K+ + + + + E K K++ K + + ++EE+ E
Sbjct: 22 RRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKLYSDVDSSSSEEEEDGSES 81
Query: 1009 EKKEEEEKEEEEKKRRRIRRKR 1030
K ++ + ++ R
Sbjct: 82 ISKLNVNSKKISLNQVSTQKWR 103
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 28.4 bits (64), Expect = 5.1
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
++ ++KK+++EE+KEE ++ ++E+E E
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVD 81
Score = 28.4 bits (64), Expect = 5.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 978 KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEE 1013
K + K ++ E+ KEE E+ KK++E ++ +
Sbjct: 51 KVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 27.7 bits (62), Expect = 8.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
K KKEE+++++EE ++ KKEEE E+
Sbjct: 52 VKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
>gnl|CDD|200352 TIGR04101, CCGSCS, CCGSCS motif protein. This protein family, with
average protein length about 58 residues, occurs in
several marine bacteria, such as Shewanella benthica
KT99, Marinobacter sp. ELB17, and Photobacterium
profundum 3TCK. The striking feature is a C-terminal
motif CCGSCS, which (perhaps coincidentally) resembles
conserved core motif [LC]CGSC shared by two methanobactin
precursors (see TIGR04071). There is no detectable
conserved gene region for these proteins.
Length = 59
Score = 27.6 bits (61), Expect = 5.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEE 1003
KKK K+ + E + + + EE+ + EEKKK K E
Sbjct: 11 KKKSAAKQVKLELEAIQQAQQSEEQVAADIEEKKKPKHGE 50
>gnl|CDD|219905 pfam08564, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding domain
of Cdc37 pfam03234.
Length = 89
Score = 28.5 bits (64), Expect = 5.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+ E +K+ KE E+E E++ E+E+ EEE +
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of numerous
eukaryotic protein kinases. This domain corresponds to
the N terminal domain which binds predominantly to
protein kinases and is found N terminal to the Hsp (Heat
shocked protein) 90-binding domain pfam08565. Expression
of a construct consisting of only the N-terminal domain
of Saccharomyces pombe Cdc37 results in cellular
viability. This indicates that interactions with the
cochaperone Hsp90 may not be essential for Cdc37
function.
Length = 172
Score = 29.8 bits (67), Expect = 5.3
Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
++++ RR +R++ + R R R + + S + K E
Sbjct: 33 KQQAIHERREQRKQEIEELEKERIMNDRLLERVDKLLSELKEESLDSSQAVMKSLNENFT 92
Query: 972 EEEEKK-----------------KKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
++E + K E K EE ++ + K K+E+KE +K +E
Sbjct: 93 DKENVEPEQPTYNEMVEDLFDQVKDEVDEKNGAALIEELQKHRDKLKKEQKELLKKLDEL 152
Query: 1015 EKEE 1018
EKEE
Sbjct: 153 EKEE 156
>gnl|CDD|148754 pfam07326, DUF1466, Protein of unknown function (DUF1466). This
family consists of several hypothetical mammalian
proteins of around 240 residues in length.
Length = 239
Score = 30.2 bits (67), Expect = 5.3
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 832 KWKRRGGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRR 881
+W+ G RRR EE+ + K+E + GG E G G R+ +RR
Sbjct: 4 QWQGMGTSVRRRSLLHEEQLEDKEELQPAGGHPETSVGALGSLCRQFQRR 53
>gnl|CDD|115071 pfam06390, NESP55, Neuroendocrine-specific golgi protein P55
(NESP55). This family consists of several mammalian
neuroendocrine-specific golgi protein P55 (NESP55)
sequences. NESP55 is a novel member of the chromogranin
family and is a soluble, acidic, heat-stable secretory
protein that is expressed exclusively in endocrine and
nervous tissues, although less widely than chromogranins.
Length = 261
Score = 30.2 bits (67), Expect = 5.3
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 983 TKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
T++ E +E EE ++ ++ ++ EE EEEEKEEE+++ R + K+
Sbjct: 193 TQEPESAREGEEPERGPLDKDPRDPEE--EEEEKEEEKQQPHRCKPKK 238
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 30.5 bits (69), Expect = 5.4
Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
++E K + ++E ++K++ K + + + E+ K+ ++ + EE ++
Sbjct: 50 KDEGIIGDKMKAYEQEALEQKQKDKKRTLQDLADSFEKSDKESQDYSSSDSGFDEEPDEP 109
Query: 1018 -EEEKKRRRIRR 1028
E R IR
Sbjct: 110 AETAGSLRPIRS 121
>gnl|CDD|197700 smart00398, HMG, high mobility group.
Length = 70
Score = 27.7 bits (62), Expect = 5.4
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
+E + K E E KK G+ K ++E+ ++K KK++E+ EEE E +
Sbjct: 14 QENRAKIKAENPDLSNAEISKKLGERWKLLSEEEKAPYEEKAKKDKERYEEEMPEYK 70
>gnl|CDD|178166 PLN02551, PLN02551, aspartokinase.
Length = 521
Score = 30.5 bits (69), Expect = 5.4
Identities = 11/49 (22%), Positives = 16/49 (32%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
RRR R R +G+ E E E ++ EK+
Sbjct: 3 PVGGGSARRRSVGSSCRNIVLRVNCSAGRVEALVEAPSETRQGGGTEKQ 51
>gnl|CDD|221919 pfam13094, CENP-Q, CENP-A-nucleosome distal (CAD) centromere subunit.
CENP-Q is one of the components that assembles onto the
CENP-A-nucleosome distal (CAD) centromere. The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying centromere
identity. CENP-A nucleosomes directly recruit a proximal
CENP-A nucleosome associated complex (NAC) comprised of
CENP-M, CENP-N and CENP-T, CENP-U(50), CENP-C and CENP-H.
Assembly of the CENP-A NAC at centromeres is dependent on
CENP-M, CENP-N and CENP-T. Additionally, there are seven
other subunits which make up the CENP-A-nucleosome distal
(CAD) centromere, CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q,
CENP-R and CENP-S, also assembling on the CENP-A NAC.
Fta7 is the equivalent component of the fission yeast
Sim4 complex.
Length = 159
Score = 29.6 bits (67), Expect = 5.5
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 973 EEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
EEE +++E + +K+ + +E E+ K + E +EE + + E +
Sbjct: 47 EEEIRREEAELEKDLEYLQELEKNAKALEREREEESKNLHPVLRLLESEV 96
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 30.2 bits (68), Expect = 5.5
Identities = 15/80 (18%), Positives = 39/80 (48%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
+ R R+ E E+E +E++ ++ EK + E E+ + + +++ +
Sbjct: 13 PAQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIE 72
Query: 1001 KEEEKEEEEKKEEEEKEEEE 1020
+E + EEE++ ++ ++E
Sbjct: 73 QERAQWEEERERLIQEAKQE 92
Score = 29.4 bits (66), Expect = 9.0
Identities = 15/80 (18%), Positives = 39/80 (48%)
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
+ R R+ + +EE+E ++ EK + E + ++ + + +++ E
Sbjct: 13 PAQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIE 72
Query: 994 EEKKKKKKEEEKEEEEKKEE 1013
+E+ + ++E E+ +E K+E
Sbjct: 73 QERAQWEEERERLIQEAKQE 92
>gnl|CDD|184300 PRK13750, PRK13750, replication protein; Provisional.
Length = 285
Score = 30.3 bits (68), Expect = 5.6
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 7/99 (7%)
Query: 881 RRSGKEEEEKKKKEGGGGR-------RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRR 933
RRS E E +++K+ G + R R R R ++ + R +R R RR R
Sbjct: 169 RRSRVEWENRQRKKQGLDTLGMDELIAKAWRFVRERFRSYQTELKSRGIKRARARRDADR 228
Query: 934 RRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKE 972
R+ +R+ R R E +++ E + KE
Sbjct: 229 ERQDIVTLVKRQLTREIAEGRFTANREAVKREVERRVKE 267
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation domain.
The centromere protein B (CENP-B) dimerisation domain is
composed of two alpha-helices, which are folded into an
antiparallel configuration. Dimerisation of CENP-B is
mediated by this domain, in which monomers dimerise to
form a symmetrical, antiparallel, four-helix bundle
structure with a large hydrophobic patch in which 23
residues of one monomer form van der Waals contacts with
the other monomer. This CENP-B dimer configuration may be
suitable for capturing two distant CENP-B boxes during
centromeric heterochromatin formation.
Length = 101
Score = 28.6 bits (63), Expect = 5.6
Identities = 7/30 (23%), Positives = 22/30 (73%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
EE+ + ++E++ +E+E+ ++E+ +E++
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDDEDD 38
Score = 28.6 bits (63), Expect = 6.4
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
E EE+ EEE +++E +E+++++++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDED 37
Score = 27.8 bits (61), Expect = 9.6
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 992 EEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E EE +EE++++++ EE++ E++++
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDED 37
>gnl|CDD|146924 pfam04528, Adeno_E4_34, Adenovirus early E4 34 kDa protein
conserved region. Conserved region found in the
Adenovirus E4 34 kDa protein.
Length = 146
Score = 29.2 bits (66), Expect = 5.7
Identities = 18/43 (41%), Positives = 19/43 (44%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRR 942
RR RR RR R R R R RRR+R RR R R
Sbjct: 100 RRTRRLLRRALTLLDKRTVRPLPRSRTERRRQRLLRRLMRYHR 142
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 30.6 bits (69), Expect = 5.7
Identities = 24/114 (21%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
R ++ R ++ +R + ++ + R+ R + K E +E K+ E +
Sbjct: 48 RGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESRLT 107
Query: 972 EEEEK--KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
E +K E + KE+ + +E+ K K ++ EE+ ++ EE+++ E +R
Sbjct: 108 ERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELER 161
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 30.1 bits (69), Expect = 5.7
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 980 EGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
EG+ + + EEEEE+ ++++EEE+EEE ++ E E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 29.7 bits (68), Expect = 6.4
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 987 EKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
E ++ E ++++EE +EEEE++EEEE EE E +
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
>gnl|CDD|214607 smart00307, ILWEQ, I/LWEQ domain. Thought to possess an F-actin
binding function.
Length = 200
Score = 29.6 bits (67), Expect = 5.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 976 KKKKEGKTKKEEKKKEEEEEKKK----KKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
K G EE+++EE+ K K +E E++ E K E E E KK IR++
Sbjct: 138 AAVKSGMIFDEEQEEEEDFSKLSLHEGKTQEMEQQVEILKLENELEAARKKLAEIRKQH 196
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a number
of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and mature
spermatozoa, together with the detection of Gas8 also in
cilia at the apical surfaces of epithelial cells lining
the pulmonary bronchi and Fallopian tubes suggests that
the Gas8 protein may have a role in the functioning of
motile cellular appendages. Gas8 is a microtubule-binding
protein localised to regions of dynein regulation in
mammalian cells.
Length = 201
Score = 29.9 bits (68), Expect = 5.9
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 961 EEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
EEE ++ KK ++ EK K+ K K K+ E+E K K + E E+ +K E E++E
Sbjct: 68 EEEVEELRKKLKDYEKDKQSLKNLKARLKELEKELKNLKWESEVLEQRFEKVERERDELY 127
Query: 1021 KK 1022
K
Sbjct: 128 DK 129
>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway components
[Intracellular trafficking and secretion].
Length = 94
Score = 28.1 bits (63), Expect = 5.9
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 966 KEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEE 1020
K+ + E ++ + ++KKKE E + K+E ++ E KE+ +K+ +
Sbjct: 40 KKAASDVKNELDEELKLEELDDKKKELTAELQATKEELDQLASELKEDLKKKAKP 94
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 30.6 bits (69), Expect = 6.0
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+ E K+ + K K EK K EE K++++ E E +E+ EE+ +++++
Sbjct: 2555 DNEIKELENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQER 2605
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 30.3 bits (69), Expect = 6.2
Identities = 14/72 (19%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
+++ E + EK + + + ++ + E E EEK+++ E + E+ +++ E +
Sbjct: 155 KQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQEL--EAQLEQLQEKAAETSQ 212
Query: 1019 EEKKRRRIRRKR 1030
E K++R+ +
Sbjct: 213 ERKQKRKEITDQ 224
>gnl|CDD|226465 COG3956, COG3956, Protein containing tetrapyrrole methyltransferase
domain and MazG-like (predicted pyrophosphatase) domain
[General function prediction only].
Length = 488
Score = 30.2 bits (68), Expect = 6.2
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEE---KKEE 1013
E+ +E KK E+ + + KK K E+ ++K K + EE K E
Sbjct: 341 LEKWDEIKKAEKDLQSYTSELKKIPKILPALILAEKLQKKAAKVGFDWANVEEAWDKVLE 400
Query: 1014 EEKEEEE 1020
E +E +E
Sbjct: 401 EMREVKE 407
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 30.3 bits (68), Expect = 6.3
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 974 EEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
+E KK+ ++ + E++ KK K++E EEE+ EE+ + + +
Sbjct: 3 DESDKKQQTIDEQSQISPEKQTPNKKDKKKE-EEEQLSEEDAMLKGDLE 50
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase, non-specific
RNA binding region part 2. This is a region found N
terminal to the catalytic domain of glutaminyl-tRNA
synthetase (EC 6.1.1.18) in eukaryotes but not in
Escherichia coli. This region is thought to bind RNA in a
non-specific manner, enhancing interactions between the
tRNA and enzyme, but is not essential for enzyme
function.
Length = 83
Score = 28.1 bits (63), Expect = 6.3
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 963 EKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEE 1004
E +KKK++++KK ++ + KK E+ + E
Sbjct: 19 EADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG 60
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 30.0 bits (68), Expect = 6.3
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 846 KKEEEKKKKKEEEEEGGEKEEEEGGGG 872
E E+EE++ G G
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDDMGFG 307
>gnl|CDD|224023 COG1098, VacB, Predicted RNA binding protein (contains ribosomal
protein S1 domain) [Translation, ribosomal structure and
biogenesis].
Length = 129
Score = 28.8 bits (65), Expect = 6.4
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKK 1011
S ++ EEE +K+ K + + + K+ +T K EE K++ +K+ +
Sbjct: 72 SIRKLEEEPEKQHRKPRFSKSRPKEGFETLLSRLLKWIEESLSTLKRQTKKKRGGRG 128
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 30.3 bits (69), Expect = 6.4
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 972 EEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEK 1021
+E E++ + + +KE ++E++E++KK E K +E + E EKE E +
Sbjct: 404 DELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAE 453
Score = 30.3 bits (69), Expect = 7.1
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEE 993
R + KE E E+ ++EKK +E K KEG+ + EK+ E E
Sbjct: 407 ERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAE 453
>gnl|CDD|133433 cd05297, GH4_alpha_glucosidase_galactosidase, Glycoside Hydrolases
Family 4; Alpha-glucosidases and alpha-galactosidases.
Glucosidases cleave glycosidic bonds to release glucose
from oligosaccharides. Alpha-glucosidases and
alpha-galactosidases release alpha-D-glucose and
alpha-D-galactose, respectively, via the hydrolysis of
alpha-glycopyranoside bonds. Some bacteria
simultaneously translocate and phosphorylate
disaccharides via the phosphoenolpyruvate-dependent
phosphotransferase system (PEP-PTS). After
translocation, these phospho-disaccharides may be
hydrolyzed by the GH4 glycoside hydrolases such as the
alpha-glucosidases. Other organsisms (such as archaea
and Thermotoga maritima) lack the PEP-PTS system, but
have several enzymes normally associated with the
PEP-PTS operon. Alpha-glucosidases and
alpha-galactosidases are part of the NAD(P)-binding
Rossmann fold superfamily, which includes a wide variety
of protein families including the NAD(P)-binding domains
of alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 423
Score = 30.2 bits (69), Expect = 6.4
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 827 KEEKKKWKRR-----GGGRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGG 872
KE KK W GGR +G + E++ K E E+ + G
Sbjct: 260 KETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSG 310
Score = 29.8 bits (68), Expect = 8.5
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 822 RRRKKKEEKKKWKRRGGGRRRR--RGKKEEEKKKKKEEEEEGGEKEEEEGGG 871
R+ KK ++ G R + EE+ K E + E + + G
Sbjct: 259 RKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSG 310
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 29.4 bits (66), Expect = 6.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 970 KKEEEEKKKKEGKTKKEEKKKEEEEE 995
KK++ + KK + K KK+E KK+ E
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAREG 116
>gnl|CDD|221283 pfam11875, DUF3395, Domain of unknown function (DUF3395). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 147 to 176 amino acids in length. This domain is
found associated with pfam00226.
Length = 144
Score = 29.2 bits (66), Expect = 6.5
Identities = 8/50 (16%), Positives = 22/50 (44%)
Query: 928 RRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKK 977
+ ++++ + R+R + + ++++ + E K EEEK
Sbjct: 2 FNKAQKKKEQERQREKNKTEIAKKKQEAESAVSLMGDVVERKLTREEEKG 51
Score = 28.8 bits (65), Expect = 8.4
Identities = 7/50 (14%), Positives = 23/50 (46%)
Query: 929 RRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
+ ++++ + R+R + + ++++ + E+K EE+K
Sbjct: 2 FNKAQKKKEQERQREKNKTEIAKKKQEAESAVSLMGDVVERKLTREEEKG 51
Score = 28.8 bits (65), Expect = 8.7
Identities = 7/49 (14%), Positives = 23/49 (46%)
Query: 923 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKK 971
+ ++++ + R+R + + ++++ S + E K E++K
Sbjct: 2 FNKAQKKKEQERQREKNKTEIAKKKQEAESAVSLMGDVVERKLTREEEK 50
Score = 28.5 bits (64), Expect = 9.9
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 940 RRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEE 994
+ ++++ + R+R K E KKK+E E E K EEE
Sbjct: 2 FNKAQKKKEQERQREKNKTEIA-------KKKQEAESAVSLMGDVVERKLTREEE 49
>gnl|CDD|220297 pfam09581, Spore_III_AF, Stage III sporulation protein AF
(Spore_III_AF). This family represents the stage III
sporulation protein AF (Spore_III_AF) of the bacterial
endospore formation program, which exists in some but not
all members of the Firmicutes (formerly called low-GC
Gram-positives). The C-terminal region of these proteins
is poorly conserved.
Length = 185
Score = 29.6 bits (67), Expect = 6.6
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKE----EEKEEEEKKE 1012
KEE + K E + +E+ + + KEE +EK+K K E + + + K+E
Sbjct: 97 KEEYGVKVKDVEVEIDEDLESNNFDIKEVNVTLKEESKEKQKSKVEPVVIDTQTSKPKEE 156
Query: 1013 EEEKEEEEKKRRRI 1026
EEE EE EK + +
Sbjct: 157 EEESEEAEKIKNFL 170
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This
family consists of several mammalian alpha helical
coiled-coil rod HCR proteins. The function of HCR is
unknown but it has been implicated in psoriasis in
humans and is thought to affect keratinocyte
proliferation.
Length = 739
Score = 30.4 bits (68), Expect = 6.6
Identities = 31/150 (20%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Query: 839 GRRRRRGKKEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEE--------- 889
GR R +G++E ++ + ++ E +E +E G + R +E E
Sbjct: 506 GRAREQGEEERQRLAEVAQQLERELQESQESLASAGAQLEAARAGQQESTEEAASLRQEL 565
Query: 890 -KKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
++++ G + + + R R + S RR RR + R+ +R+ + + R
Sbjct: 566 TQQQEVYGQALQEKVAEVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRQAAQEKER 625
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
+ RR +E +EE ++ ++ +E E+ K
Sbjct: 626 NQELRRLQEEARKEEGQRLSRRLQELERDK 655
>gnl|CDD|163641 cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related
proteins, metallophosphatase domain. YbbF/LpxH is an
Escherichia coli UDP-2,3-diacylglucosamine hydrolase
thought to catalyze the fourth step of lipid A
biosynthesis, in which a precursor
UDP-2,3-diacylglucosamine is hydrolyzed to yield
2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs
to the metallophosphatase (MPP) superfamily. MPPs are
functionally diverse, but all share a conserved domain
with an active site consisting of two metal ions
(usually manganese, iron, or zinc) coordinated with
octahedral geometry by a cage of histidine, aspartate,
and asparagine residues. The MPP superfamily includes:
Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat
debranching enzymes, YfcE-like phosphodiesterases,
purple acid phosphatases (PAPs), YbbF-like
UDP-2,3-diacylglucosamine hydrolases, and acid
sphingomyelinases (ASMases). The conserved domain is a
double beta-sheet sandwich with a di-metal active site
made up of residues located at the C-terminal side of
the sheets. This domain is thought to allow for
productive metal coordination.
Length = 217
Score = 29.7 bits (67), Expect = 6.6
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRR--RRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKK 970
R + RR R + R RRR R R +++ K + +E
Sbjct: 123 RAYQLLRRLGRNPYDQLLFLNRPLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVA 182
Query: 971 KEEEEKKKK 979
+ K
Sbjct: 183 RLARRKGVD 191
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two proteins
encoded by the ATP11 and ATP12 genes. Atp11p is a
molecular chaperone of the mitochondrial matrix that
participates in the biogenesis pathway to form F1, the
catalytic unit of the ATP synthase.
Length = 250
Score = 29.6 bits (67), Expect = 6.7
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 941 RRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
+ R + ++ + SG E E KK + K E++E K+ T ++ + + K K
Sbjct: 1 YEKYRSKLLQKAKESGLEFIERLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKP 60
Query: 1001 KEEEK 1005
+++K
Sbjct: 61 ADKKK 65
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA,
L11, and L10e in archaea). In bacterial ribosomes, L7/L12
homodimers bind the extended C-terminal helix of L10 to
anchor the L7/L12 molecules to the ribosome. Eukaryotic
P1/P2 heterodimers and archaeal L12p homodimers are
believed to bind the L10 equivalent proteins, eukaryotic
P0 and archaeal L10e, in a similar fashion. P1 and P2
(L12p, L7/L12) are the only proteins in the ribosome to
occur as multimers, always appearing as sets of dimers.
Recent data indicate that most archaeal species contain
six copies of L12p (three homodimers), while eukaryotes
have two copies each of P1 and P2 (two heterodimers).
Bacteria may have four or six copies (two or three
homodimers), depending on the species. As in bacteria,
the stalk is crucial for binding of initiation,
elongation, and release factors in eukaryotes and
archaea.
Length = 105
Score = 28.4 bits (63), Expect = 6.8
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 1002 EEEKEEEEKKEEEEKEEEE 1020
E ++ EE KEEEE+EE+E
Sbjct: 80 EPAEKAEEAKEEEEEEEDE 98
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 30.0 bits (68), Expect = 6.8
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEK 1016
++ E E+ KEE +K K K +E E +++ K KEE E+ +K +++
Sbjct: 287 RKNEFEKYDKEEDEKPLFLKWKLPISIVRETYY-EVQDKVVKLTKEEAVEKGKKLAKKKL 345
Query: 1017 EEE 1019
E+E
Sbjct: 346 EKE 348
>gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1). This family
consists of several mammalian dentin matrix protein 1
(DMP1) sequences. The dentin matrix acidic phosphoprotein
1 (DMP1) gene has been mapped to human chromosome 4q21.
DMP1 is a bone and teeth specific protein initially
identified from mineralised dentin. DMP1 is primarily
localised in the nuclear compartment of undifferentiated
osteoblasts. In the nucleus, DMP1 acts as a
transcriptional component for activation of
osteoblast-specific genes like osteocalcin. During the
early phase of osteoblast maturation, Ca(2+) surges into
the nucleus from the cytoplasm, triggering the
phosphorylation of DMP1 by a nuclear isoform of casein
kinase II. This phosphorylated DMP1 is then exported out
into the extracellular matrix, where it regulates
nucleation of hydroxyapatite. DMP1 is a unique molecule
that initiates osteoblast differentiation by
transcription in the nucleus and orchestrates mineralised
matrix formation extracellularly, at later stages of
osteoblast maturation. The DMP1 gene has been found to be
ectopically expressed in lung cancer although the reason
for this is unknown.
Length = 514
Score = 30.0 bits (67), Expect = 6.8
Identities = 30/172 (17%), Positives = 61/172 (35%), Gaps = 3/172 (1%)
Query: 847 KEEEKKKKKEEEEEGGEKEEEEGGGGGGRRRRRRRRSGKEEEEKKKKEGGGGRRRRRRKK 906
E+E + E + + E EE GGG G E +++ + R R
Sbjct: 170 NEDEVDSRPEGGDSTQDSESEEHWVGGGSEGESSHGDGSEFDDEGMQSDDPESTRSERGN 229
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
R S + + + + + R+ R+ R G+ E ++
Sbjct: 230 SRMSSAGLKSKESKGEDEEQASTQDSGESQSVEYPSRKFFRKSRISEEDGRGELDDSNTM 289
Query: 967 EEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEE 1018
E K E + +E + E +E+ ++ + +E+ +E + E +E
Sbjct: 290 EVKSDSTENAGLSQ---SREHSRSESQEDSEENQSQEDSQEVQDPSSESSQE 338
>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd subfamily;
Phd is a cytosolic regulator of G protein functions. It
specifically binds G protein betagamma (Gbg)-subunits
with high affinity, resulting in the solubilization of
Gbg from the plasma membrane. This impedes the formation
of a functional G protein trimer (G protein
alphabetagamma), thereby inhibiting G protein-mediated
signal transduction. Phd also inhibits the GTPase
activity of G protein alpha. Phd can be phosphorylated
by protein kinase A and G protein-coupled receptor
kinase 2, leading to its inactivation. Phd was
originally isolated from the retina, where it is highly
expressed and has been implicated to play an important
role in light adaptation. It is also found in the pineal
gland, liver, spleen, striated muscle and the brain. The
C-terminal domain of Phd adopts a thioredoxin fold, but
it does not contain a CXXC motif. Phd interacts with G
protein beta mostly through the N-terminal helical
domain.
Length = 175
Score = 29.2 bits (66), Expect = 6.8
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 876 RRRRRRRSGKEEEEKKKKEGGGGRRRRRRKKRRRSRRRRSRRRRRRRR 923
R+ ++ E+E+ E ++ R++R + + RR +
Sbjct: 16 WRKFKQLKESEQEDDDDDEDKEEFLQQYREQRMQEMHAKLPFGRRFGK 63
>gnl|CDD|237748 PRK14537, PRK14537, 50S ribosomal protein L20/unknown domain fusion
protein; Provisional.
Length = 230
Score = 29.6 bits (66), Expect = 6.9
Identities = 10/68 (14%), Positives = 29/68 (42%)
Query: 955 SGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEE 1014
S + K K+ E ++K +K + E+ + +++ + E E + ++
Sbjct: 118 SQFQSTTITKPKKVLINEVLQEKTINQNEEKTSLQNEKVLSPELSEEKSDSELETQPQKT 177
Query: 1015 EKEEEEKK 1022
+ +E++
Sbjct: 178 QLKEKKPS 185
Score = 29.2 bits (65), Expect = 8.8
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 968 EKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKR 1023
E K+ + + TK ++ E ++K + EEK + ++ E E+K
Sbjct: 111 ELAKKFLSQFQSTTITKPKKVLINEVLQEKTINQNEEKTSLQNEKVLSPELSEEKS 166
>gnl|CDD|197305 cd07026, Ribosomal_L20, Ribosomal protein L20. The ribosomal
protein family L20 contains members from eubacteria, as
well as their mitochondrial and plastid homologs. L20 is
an assembly protein, required for the first in-vitro
reconstitution step of the 50S ribosomal subunit, but
does not seem to be essential for ribosome activity. L20
has been shown to partially unfold in the absence of
RNA, in regions corresponding to the RNA-binding sites.
L20 represses the translation of its own mRNA via
specific binding to two distinct mRNA sites, in a manner
similar to the L20 interaction with 23S ribosomal RNA. .
Length = 106
Score = 28.2 bits (64), Expect = 7.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 895 GGGGRRRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 948
G R+RR+K + ++ R RR R R ++ + R R++++R RR
Sbjct: 1 RGVVARKRRKKILKLAKGFRGRRSRLFRTAKQAVMKALAYAYRDRKQKKRDFRR 54
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 30.4 bits (69), Expect = 7.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTK 984
RR E+ E+ +EE ++ E E++KK K
Sbjct: 246 RRKLYGEKRAERVREELREVEREREKKRRKLG 277
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 30.0 bits (68), Expect = 7.2
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 9/59 (15%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
KE E E+K++E ++K ++ +K G E+ EE K K E K EEE++++ E
Sbjct: 94 KELEREQKEEEVREKHNKKIIEKFG---------EDLEEVYKFMKGEAKVEEEEEKQME 143
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 30.2 bits (69), Expect = 7.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 947 RRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGK 982
+R R + + EEEE+KKEEKK ++GK
Sbjct: 66 QRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins P1,
P0, L11, and 28S rRNA. P1 and P2 are the only proteins in
the ribosome to occur as multimers, always appearing as
sets of heterodimers. Recent data indicate that
eukaryotes have four copies (two heterodimers), while
most archaeal species contain six copies of L12p (three
homodimers). Bacteria may have four or six copies of
L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third P-protein,
called P3, which is not homologous to P1 and P2. In
humans, P1 and P2 are strongly autoimmunogenic. They play
a significant role in the etiology and pathogenesis of
systemic lupus erythema (SLE). In addition, the
ribosome-inactivating protein trichosanthin (TCS)
interacts with human P0, P1, and P2, with its primary
binding site in the C-terminal region of P2. TCS
inactivates the ribosome by depurinating a specific
adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 28.4 bits (64), Expect = 7.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 993 EEEKKKKKKEEEKEEEE 1009
KK++KKEE +EE +
Sbjct: 84 AAAKKEEKKEESEEESD 100
Score = 28.0 bits (63), Expect = 8.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1003 EEKEEEEKKEEEEKEEEE 1020
++EEKKEE E+E ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 29.7 bits (67), Expect = 7.4
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
KE+ +K K +E+ +K+ E E +E KKKK
Sbjct: 67 KEKYNITRKTTGKNDLPKEEDSSLPSSKETENGDTEGKETDKKKK 111
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.
Length = 438
Score = 29.8 bits (68), Expect = 7.5
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 954
RR R ++R R R +++ +RR R ++R + +R RR RR+ +R+R+R
Sbjct: 326 ERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAMRRQLKRKRQR 380
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 29.9 bits (68), Expect = 7.5
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEK-----------KKKKKEEEKEE 1007
EK +EE ++ E EK+K E + ++EEK+ E K K K K+
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQGLSKTKKNFGKGIKGLFLKKI 60
Query: 1008 EEKKEEEEKEEEE 1020
+EK +E+ EE E
Sbjct: 61 KEKLDEDLLEELE 73
>gnl|CDD|192292 pfam09429, Wbp11, WW domain binding protein 11. The WW domain is a
small protein module with a triple-stranded beta-sheet
fold. This is a family of WW domain binding proteins.
Length = 78
Score = 27.6 bits (62), Expect = 7.6
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 975 EKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRKR 1030
E+KKKE K K E++ E + KK + + E +K + +E+ + + + + K+
Sbjct: 13 EQKKKELKKNKAERQARREAKLAKKNPDRLQRELDKLKAQEESGKLRPVEKQKLKK 68
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 29.1 bits (66), Expect = 7.8
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 900 RRRRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEE 959
++++ +R +S+++ R R R+R+++ + + R E
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRH-----------NEG 49
Query: 960 EEEEKKKEEKKKEEEEKKKKEGKTKK-----EEKKKEEEEEKKKKKKEEEKEEE-EKKEE 1013
+ K K + +K K + G K EEK K ++++ K KK + E+E EK E
Sbjct: 50 NTQSKGKGQAQK----KDPRIGSKKPIPLGVEEKVKPKKKKPKSKKPKLSPEQELEKLEN 105
Query: 1014 EEK 1016
+E+
Sbjct: 106 DER 108
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 28.8 bits (65), Expect = 7.9
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRRIRRK 1029
EEE+ ++ K+ EEE E E + EE +E+EK +++
Sbjct: 87 EEEQLRRIKELEEELREVEAEREEAVKEKEKLLKKVEAL 125
>gnl|CDD|216095 pfam00748, Calpain_inhib, Calpain inhibitor. This region is found
multiple times in calpain inhibitor proteins.
Length = 131
Score = 28.6 bits (64), Expect = 7.9
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 956 GKEEEEEEKK-----KEEKKKEEEEKK--KKEGKTKKEEKKKEEEEEKKKKKKEEEKEE 1007
+E + EEKK +EK KEE+ +K ++E E + E +++ K + +EE
Sbjct: 73 QREPDPEEKKPVEDKVKEKAKEEKLEKLGEREDTIPPEYRLLEAKDKDGKPLLPKPEEE 131
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 27.4 bits (61), Expect = 8.1
Identities = 5/32 (15%), Positives = 20/32 (62%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E + +++E+ +++K++++ ++E+ E
Sbjct: 49 EPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 29.8 bits (67), Expect = 8.2
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 944 RRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGK 982
RR R ++E+ KK+++ KEE K GK
Sbjct: 341 RRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGK 379
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo I
from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB (eukaryotic).
Topo I relaxes superhelical tension in duplex DNA by
creating a single-strand nick, the broken strand can then
rotate around the unbroken strand to remove DNA
supercoils and, the nick is religated, liberating topo I.
These enzymes regulate the topological changes that
accompany DNA replication, transcription and other
nuclear processes. Human topo I is the target of a
diverse set of anticancer drugs including camptothecins
(CPTs). CPTs bind to the topo I-DNA complex and inhibit
religation of the single-strand nick, resulting in the
accumulation of topo I-DNA adducts. In addition to
differences in structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles in
organizing the kinetoplast DNA network unique to these
parasites. This family may represent more than one
structural domain.
Length = 217
Score = 29.5 bits (66), Expect = 8.4
Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Query: 991 EEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
EEE+EKKK +EEKE + KKE ++E
Sbjct: 94 EEEKEKKKNLNKEEKEAK-KKERAKRE 119
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required for
growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 27.6 bits (62), Expect = 8.4
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 14/78 (17%)
Query: 964 KKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK----------KKEEEKEEEEKKE- 1012
+ + + +K+ E +K +KE KK + KKKK K+E +E EEKK
Sbjct: 1 RLRYKIEKKVAEHHRKL---RKEAKKNPTWKSKKKKDPGIPNSFPFKEEILEEIEEKKRK 57
Query: 1013 EEEKEEEEKKRRRIRRKR 1030
+EE++E K+ R+ R
Sbjct: 58 QEEEKERRKEARKAERAE 75
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional regulation.
Length = 116
Score = 28.3 bits (63), Expect = 8.5
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 986 EEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+ ++EE + + E++ E ++EEEEK +++KK +
Sbjct: 78 FMEIQKEERRSARMARLEDERELAREEEEEKRKKKKKNK 116
>gnl|CDD|180892 PRK07220, PRK07220, DNA topoisomerase I; Validated.
Length = 740
Score = 30.1 bits (68), Expect = 8.5
Identities = 15/66 (22%), Positives = 31/66 (46%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKE 1017
E ++++K+E+ ++ ++EK K K KK E+ E+ E E + E +
Sbjct: 666 IEWQKKQKEEKAQQPKKEKPKSIKDIKGIGKKTAEKLEEAGITTVEALAEADPVELSKTT 725
Query: 1018 EEEKKR 1023
+ K+
Sbjct: 726 KISVKK 731
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly of
the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that carry
internal targetting information, into the inner membrane.
Length = 377
Score = 29.7 bits (67), Expect = 8.6
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 959 EEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
E E + + E ++ T +E + EEE K K
Sbjct: 210 PETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKP 252
Score = 29.3 bits (66), Expect = 9.9
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKK 1001
E E E + E ++ E ++ E EEE K K
Sbjct: 210 PETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPP 253
>gnl|CDD|149048 pfam07768, PVL_ORF50, PVL ORF-50-like family. This is a family of
sequences found in both bacteria and bacteriophages. This
region is approximately 130 residues long and in some
cases is found as part of the PVL (Panton-Valentine
leukocidin) group of genes, which encode a member of the
leukocidin group of bacterial toxins that kill leukocytes
by creation of pores in the cell membrane. PVL appears to
be a virulence factor associated with a number of human
diseases.
Length = 118
Score = 28.3 bits (63), Expect = 8.6
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 988 KKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRR 1024
+ KE E KK + E+E++E E + + KE E ++++
Sbjct: 50 RLKEYREIKKSENIEQERKERELERKRRKEAELRRKK 86
Score = 28.3 bits (63), Expect = 8.7
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 989 KKEEEEEKKKKKKEEEKEEEEKKEEEEKEEEEKKRRR 1025
+ +E E KK + E++ +E + E + ++E E +R++
Sbjct: 50 RLKEYREIKKSENIEQERKERELERKRRKEAELRRKK 86
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 30.0 bits (67), Expect = 8.6
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 927 RRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKK 985
R + R RR +R+R + +R + + K ++ EKK GKTKK
Sbjct: 499 REDKNRLRRALKRKRSKANLPNVNKRSKRNDVVDTLSKANITVINQKGEKKDVSGKTKK 557
Score = 29.7 bits (66), Expect = 9.5
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 920 RRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKKEEKKKEEEEKKK 978
R + R RR +R+R + +R +R K +K EKK + KK
Sbjct: 499 REDKNRLRRALKRKRSKANLPNVNKRSKRNDVVDTLSKANITVINQKGEKKDVSGKTKK 557
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair of
CXXC motifs, followed by a long region of low complexity
sequence in which roughly half the residues are Asp and
Glu, including multiple runs of five or more acidic
residues. The function of members of this family is
unknown.
Length = 104
Score = 28.0 bits (63), Expect = 8.8
Identities = 4/39 (10%), Positives = 21/39 (53%)
Query: 981 GKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEEKEEE 1019
K++ E+ +K + +++E+ + ++++ +++
Sbjct: 41 AKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDD 79
>gnl|CDD|147685 pfam05663, DUF809, Protein of unknown function (DUF809). This family
consists of several proteins of unknown function Raphanus
sativus (Radish) and Brassica napus (Rape).
Length = 138
Score = 28.6 bits (63), Expect = 8.8
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 958 EEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKK 1000
E E +E+KKE K + E +++KKEGK + E K++++E E +K
Sbjct: 96 EIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVENGPRK 138
>gnl|CDD|220417 pfam09812, MRP-L28, Mitochondrial ribosomal protein L28. Members of
this family are components of the mitochondrial large
ribosomal subunit. Mature mitochondrial ribosomes consist
of a small (37S) and a large (54S) subunit. The 37S
subunit contains at least 33 different proteins and 1
molecule of RNA (15S). The 54S subunit contains at least
45 different proteins and 1 molecule of RNA (21S).
Length = 146
Score = 28.5 bits (64), Expect = 8.9
Identities = 22/113 (19%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 907 RRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEEKKK 966
+++ + +R +R+R+R + R+R + R + R + S E + ++K
Sbjct: 2 CAEPLKKKKKVDPQREQRKRKRLEKFIRKRTKSARGLKPVEDRIVPQLSVDEAKRRQRKL 61
Query: 967 EEKKKEEEEK----KKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKEEEE 1015
+ E+ E+ +K +++E++ E ++ +++ + ++E EE K E E
Sbjct: 62 LKLSPEDLERRALIEKCWALYQQQEREAENQQLRQQYEAQQEALEELKLESPE 114
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 29.2 bits (66), Expect = 8.9
Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 949 RRRRRRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEE 1008
R ++ +G+ + + KK+E +++ E ++K E + +++ E K +EE + E
Sbjct: 36 AREKKIAGELADADTKKREAEQERREYEEKNE--------ELDQQREVLLTKAKEEAQAE 87
Query: 1009 EKKEEEEKEEEEKKRRRIRR 1028
++ +E EE + R +
Sbjct: 88 RQRLLDEAREEADEIREKWQ 107
>gnl|CDD|150231 pfam09486, HrpB7, Bacterial type III secretion protein (HrpB7).
This entry represents proteins encoded by genes which
are found in type III secretion operons in a narrow
range of species including Xanthomonas, Burkholderia and
Ralstonia.
Length = 158
Score = 28.7 bits (64), Expect = 9.1
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 913 RRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKEEEEEE 963
RR+ RR RRRRR RR R R + R R+ + +
Sbjct: 1 RRASAFRRLLERRRRRDRRLRAELSALRAALQAADRELAECRAAARAKADR 51
>gnl|CDD|222226 pfam13565, HTH_32, Homeodomain-like domain.
Length = 74
Score = 27.3 bits (61), Expect = 9.2
Identities = 7/47 (14%), Positives = 8/47 (17%)
Query: 912 RRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRSGKE 958
+R R R R R R R
Sbjct: 6 LKRYREEGAAGLVHRPGRPSNHRYPEELRAIVLTLIREPYADFGPTL 52
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 29.7 bits (67), Expect = 9.3
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 957 KEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKK-KKEEEKEEEEKKEEEE 1015
K+EEE ++ EE+ EEE + K E E +K KE+ E+ K + +
Sbjct: 886 KKEEEFKQFAEEEGLNEEELAFYDDLALNGGKLPENGTELVEKLAKEKSLREKNKDDWKA 945
Query: 1016 KEEEEKKRRRIRRK 1029
KEE E K + R+
Sbjct: 946 KEEVEAKLKAFFRR 959
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 29.2 bits (65), Expect = 9.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 996 KKKKKKEEEKEEEEKKEEEEKEEEEKK 1022
K K +K+E +E++EK EE E + E+++
Sbjct: 149 KSKNQKQENQEKQEKLEESEIQSEKQE 175
>gnl|CDD|204122 pfam09072, TMA7, Translation machinery associated TMA7. TMA7 plays a
role in protein translation. Deletions of the TMA7 gene
results in altered protein synthesis rates.
Length = 63
Score = 27.1 bits (60), Expect = 9.4
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 977 KKKEGKTKKEEKKKEEEEEK--KKKKKEEEKEEEEKKEE 1013
KKK K K++KK+ +EE+ K+K+KEE K +E +
Sbjct: 7 KKKPLKAPKKQKKELDEEDLAFKQKQKEEAKALKELAAK 45
>gnl|CDD|145900 pfam02994, Transposase_22, L1 transposable element.
Length = 370
Score = 29.6 bits (66), Expect = 9.5
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 953 RRSGKEEEEEEKKKEEKKKEEEEKKKKEGKTKKEEKKKEEEEEKKKKKKEEEKEEEEKKE 1012
++ E+ + + K+ + K+ +E TK+ E E E+ K+ E +K+ E KE
Sbjct: 53 KKDNYSSLREDIETKGKEVQNFLKELEECITKQVEAHIENTEKCLKELMELKKKARELKE 112
Query: 1013 E 1013
E
Sbjct: 113 E 113
>gnl|CDD|224486 COG1570, XseA, Exonuclease VII, large subunit [DNA replication,
recombination, and repair].
Length = 440
Score = 29.5 bits (67), Expect = 9.7
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 902 RRRKKRRRSRRRRSRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRR 953
+R+ R RR ++++R RR + R R +++R R RR
Sbjct: 273 LQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRLDELAIRLRR 324
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.136 0.385
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 55,845,679
Number of extensions: 6082505
Number of successful extensions: 90080
Number of sequences better than 10.0: 1
Number of HSP's gapped: 56716
Number of HSP's successfully gapped: 6263
Length of query: 1030
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 923
Effective length of database: 6,191,724
Effective search space: 5714961252
Effective search space used: 5714961252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.3 bits)