BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6284
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FTC|H Chain H, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
Length = 148
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 1 MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
MS++ R +QW TFARIW++ D K Q P + A + S LQG HKP+YH L+DCGDHV++M
Sbjct: 1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIM 60
Query: 60 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
N+RHIA G +W+++ Y HTGYPGG A QLH DP
Sbjct: 61 NTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPV 101
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 66/110 (60%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K Q N K + AI+ Y+ AI+ P +A+++ NR+L +L+ + Y A D T +++L
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 69
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
D Y+K Y RRAA+ +L F A +D V+ ++P++K A+++ E N+
Sbjct: 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 66/110 (60%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K Q N K + AI+ Y+ AI+ P +A+++ NR+L +L+ + Y A D T +++L
Sbjct: 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 76
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
D Y+K Y RRAA+ +L F A +D V+ ++P++K A+++ E N+
Sbjct: 77 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 66/110 (60%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K Q N K + AI+ Y+ AI+ P +A+++ NR+L +L+ + Y A D T +++L
Sbjct: 25 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIEL 84
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
D Y+K Y RRAA+ +L F A +D V+ ++P++K A+++ E N+
Sbjct: 85 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 134
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 60/101 (59%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K +GN+ K+G + A+ YN A++ P +A+ ++NRA C K+ + A DC ++L
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
D+ ++K Y R+AA ++ + A++ L ++P+N++A
Sbjct: 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 61/105 (58%)
Query: 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA 191
A+ K +GN+ ++G + +A++ Y AI+ P DA ++NRA C+ K+ + A DC
Sbjct: 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Query: 192 SLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
++L+ T++K Y R+AAA ++ + A K L L+ + K+A
Sbjct: 76 CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K +GN+ +K + A+ Y AI+ P +AV+F NRA + K+ NY A DC ++ +
Sbjct: 16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK--QAEIELAEL 243
D Y KAY R A SLN +A K L L+P+N+ ++ +++AEL
Sbjct: 76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 58/102 (56%), Gaps = 3/102 (2%)
Query: 136 KEQGNKLVKEGKWGEAIEKYN--VAIQTYPHD-AVFFANRALCFLKMKNYVSAEADCTAS 192
+++GN+L K G +G A+ Y + + P D AV NRA C LK+++Y AE + + +
Sbjct: 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91
Query: 193 LKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK 234
++ D VKA RR+ A L + A D+ + ++LEP NK
Sbjct: 92 IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFF---------------ANR 172
++ + KE+G KEGK+ +A+ +Y + +++ F N
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202
Query: 173 ALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232
A+C LK++ + +A C +L+LD+ K RR A ++N FE AR D KVL L PN
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 233 NKQAEIELAELNRKLNIPLS 252
NK A+ +LA +++ L+
Sbjct: 263 NKAAKTQLAVCQQRIRRQLA 282
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---------------FANR 172
++ + KE+G KEGK+ +A+ +Y + +++ F N
Sbjct: 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202
Query: 173 ALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232
A+C LK++ + +A C +L+LD+ K RR A ++N FE AR D KVL L PN
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 233 NKQAEIELAELNRKLNIPLS 252
NK A+ +LA +++ L+
Sbjct: 263 NKAAKTQLAVCQQRIRRQLA 282
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
KE+GNK + G +A++ Y+ AI+ PH+ V ++NR+ + K +Y A D ++ L
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQ 235
+ K Y R+AAA LN FE+A++ + L E NN Q
Sbjct: 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ 107
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%)
Query: 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190
SA KEQGN+L K+ EA Y AI P AV++ NRALC+LKM+ A ADC
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 191 ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL 229
+L+LD VKA+ + + +++A ++ + +L
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAI-----------------EKYNVAIQTYPHDAVFFA 170
++ A KE+G K GK+ +A+ EK + A +++ A F
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA--FL 321
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
N A+C+LK++ Y A C +L LD+ K RR A+ +N FE A+ D KVL +
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
Query: 231 PNNKQAEIELAELNRK 246
P NK A ++++ +K
Sbjct: 382 PQNKAARLQISMCQKK 397
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 44/73 (60%)
Query: 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190
SA KEQGN+L K+ EA Y AI P AV++ NRALC+LKM+ A ADC
Sbjct: 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 67
Query: 191 ASLKLDNTYVKAY 203
+L+LD VKA+
Sbjct: 68 RALELDGQSVKAH 80
>pdb|1P85|H Chain H, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
State Of E. Coli 70s Ribosome
pdb|1P86|H Chain H, Real Space Refined Coordinates Of The 50s Subunit Fitted
Into The Low Resolution Cryo-Em Map Of The
Initiation-Like State Of E. Coli 70s Ribosome
pdb|2AW4|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File
Contains The 50s Subunit Of One 70s Ribosome. The
Entire Crystal Structure Contains Two 70s Ribosomes And
Is Described In Remark 400.
pdb|2AWB|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli At 3.5 A Resolution. This File
Contains The 50s Subunit Of The Second 70s Ribosome.
The Entire Crystal Structure Contains Two 70s Ribosomes
And Is Described In Remark 400.
pdb|1VS6|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|1VS8|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With The Antibiotic
Kasugamyin At 3.5a Resolution. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|2GYA|H Chain H, Structure Of The 50s Subunit Of A Pre-Translocational E.
Coli Ribosome Obtained By Fitting Atomic Models For Rna
And Protein Components Into Cryo-Em Map Emd-1056
pdb|2GYC|H Chain H, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli
Ribosome Complex Obtained By Fitting Atomic Models For
Rna And Protein Components Into Cryo-Em Map Emd-1143
pdb|2I2T|J Chain J, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|2I2V|J Chain J, Crystal Structure Of Ribosome With Messenger Rna And The
Anticodon Stem-Loop Of P-Site Trna. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|2QOV|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The First 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QOX|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin. This
File Contains The 50s Subunit Of The Second 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|2QOZ|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
First 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QP1|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Spectinomycin And
Neomycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Neomycin Bound. The Entire
Crystal Structure Contains Two 70s Ribosomes.
pdb|2QAM|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The First 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QAO|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Neomycin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Neomycin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBA|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The First 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBC|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin. This File
Contains The 50s Subunit Of The Second 70s Ribosome,
With Gentamicin Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2QBE|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
First 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|2QBG|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Ribosome Recycling
Factor (Rrf). This File Contains The 50s Subunit Of The
Second 70s Ribosome, With Rrf Bound. The Entire Crystal
Structure Contains Two 70s Ribosomes And Is Described
In Remark 400.
pdb|2QBI|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Gentamicin
And Rrf Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2QBK|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Gentamicin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With Gentamicin
And Rrf Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2Z4L|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The First 70s Ribosome, With Paromomycin
And Rrf Bound. The Entire Crystal Structure Contains
Two 70s Ribosomes And Is Described In Remark 400.
pdb|2Z4N|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Paromomycin And
Ribosome Recycling Factor (Rrf). This File Contains The
50s Subunit Of The Second 70s Ribosome, With
Paromomycin And Rrf Bound. The Entire Crystal Structure
Contains Two 70s Ribosomes And Is Described In Remark
400.
pdb|2VHM|J Chain J, Structure Of Pdf Binding Helix In Complex With The
Ribosome (Part 1 Of 4)
pdb|2VHN|J Chain J, Structure Of Pdf Binding Helix In Complex With The
Ribosome. (Part 2 Of 4)
pdb|2RDO|J Chain J, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
pdb|3DF2|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This
File Contains The 50s Subunit Of The First 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|3DF4|J Chain J, Crystal Structure Of The Bacterial Ribosome From
Escherichia Coli In Complex With Hygromycin B. This
File Contains The 50s Subunit Of The Second 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes.
pdb|3BBX|J Chain J, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em
Map 50s.Nc-Trna.Hsp15 Complex
pdb|3FIK|J Chain J, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 50s Subunit.
pdb|3I1N|J Chain J, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1P|J Chain J, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1R|J Chain J, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I1T|J Chain J, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I20|J Chain J, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3I22|J Chain J, Crystal Structure Of The E. Coli 70s Ribosome In An
Intermediate State Of Ratcheting
pdb|3KCR|J Chain J, Ribosome-Secy Complex. This Entry 3kcr Contains 50s
Ribosomal Subnit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 3kc4
pdb|2WWQ|J Chain J, E.Coli 70s Ribosome Stalled During Translation Of Tnac
Leader Peptide. This File Contains The 50s, The P-Site
Trna And The Tnac Leader Peptide (Part 2 Of 2).
pdb|1VT2|J Chain J, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3ORB|J Chain J, Crystal Structure Of The E. Coli Ribosome Bound To
Cem-101. This File Contains The 50s Subunit Of The
First 70s Ribosome Bound To Cem-101.
pdb|3OFQ|J Chain J, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OFR|J Chain J, Crystal Structure Of The E. Coli Ribosome Bound To
Erythromycin. This File Contains The 50s Subunit Of The
First 70s Ribosome With Erthromycin Bound.
pdb|3OFC|J Chain J, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The First 70s Ribosome With Chloramphenicol Bound.
pdb|3OFD|J Chain J, Crystal Structure Of The E. Coli Ribosome Bound To
Chloramphenicol. This File Contains The 50s Subunit Of
The Second 70s Ribosome.
pdb|3OFZ|J Chain J, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
First 70s Ribosome Bound To Clindamycin.
pdb|3OG0|J Chain J, Crystal Structure Of The E. Coli Ribosome Bound To
Clindamycin. This File Contains The 50s Subunit Of The
Second 70s Ribosome.
pdb|3OAS|J Chain J, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of
The Second 70s Ribosome.
pdb|3OAT|J Chain J, Crystal Structure Of The E. Coli Ribosome Bound To
Telithromycin. This File Contains The 50s Subunit Of
The First 70s Ribosome With Telithromycin Bound.
pdb|3IZT|K Chain K, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A
Near-Cognate Codon.
pdb|3IZU|K Chain K, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Large Subunit Of A Ribosome Programmed With A Cognate
Codon
pdb|3J01|J Chain J, Structure Of The Ribosome-Secye Complex In The Membrane
Environment
pdb|3R8S|J Chain J, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3R8T|J Chain J, Structures Of The Bacterial Ribosome In Classical And
Hybrid States Of Trna Binding
pdb|3SGF|N Chain N, Crystal Structure Of Release Factor Rf3 Trapped In The
Gtp State On A Rotated Conformation Of The Ribosome
pdb|3UOS|N Chain N, Crystal Structure Of Release Factor Rf3 Trapped In The
Gtp State On A Rotated Conformation Of The Ribosome
(Without Viomycin)
pdb|3J0T|L Chain L, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class2 Of The Six
Classes)
pdb|3J0W|L Chain L, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4a Of The Six
Classes)
pdb|3J0Y|L Chain L, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 4b Of The Six
Classes)
pdb|3J11|L Chain L, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 3 Of The Six
Classes)
pdb|3J12|L Chain L, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 5 Of The Six
Classes)
pdb|3J14|L Chain L, Structural Characterization Of Mrna-Trna Translocation
Intermediates (50s Ribosome Of Class 6 Of The Six
Classes)
pdb|3J19|J Chain J, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And
Mld-Loading (50s Subunit)
pdb|4GAR|J Chain J, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
pdb|4GAU|J Chain J, Allosteric Control Of The Ribosome By Small-Molecule
Antibiotics
Length = 142
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 12 TFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEW 71
T R W++ DA + A +++ L+G+HK Y P D GD++IV+N+ +A+ G +
Sbjct: 10 TVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKR 69
Query: 72 KKRAYFHHTGYPGGV 86
+ Y+HHTG+ GG+
Sbjct: 70 TDKVYYHHTGHIGGI 84
>pdb|2J28|J Chain J, Model Of E. Coli Srp Bound To 70s Rncs
pdb|3IY9|J Chain J, Leishmania Tarentolae Mitochondrial Large Ribosomal
Subunit Model
pdb|3E1B|6 Chain 6, Structure Of The 50s Subunit Of E. Coli Ribosome In
Pre-Accommodation State
pdb|3E1D|6 Chain 6, Structure Of The 50s Subunit Of E. Coli Ribosome In
Post-Accommodation State
Length = 140
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 12 TFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEW 71
T R W++ DA + A +++ L+G+HK Y P D GD++IV+N+ +A+ G +
Sbjct: 10 TVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKR 69
Query: 72 KKRAYFHHTGYPGGV 86
+ Y+HHTG+ GG+
Sbjct: 70 TDKVYYHHTGHIGGI 84
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 19/130 (14%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAI-----------------EKYNVAIQTYPHDAVFFA 170
++ A KE+G K GK+ +A+ EK + A +++ A F
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA--FL 321
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
N A+C+LK++ Y A C +L LD+ K RR A+ +N FE A+ D KVL +
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
Query: 231 PNNKQAEIEL 240
P NK A +++
Sbjct: 382 PQNKAARLQI 391
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA 187
R A AV K +GN + EAI+ Y AI+ P++ VF++N + C++ +
Sbjct: 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIE 80
Query: 188 DCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
T +L++ + KA RRA+A SL +F DA D L VL+L + A IE L R L
Sbjct: 81 FTTKALEIKPDHSKALLRRASANESLGNFTDAMFD-LSVLSLNGDFDGASIE-PMLERNL 138
Query: 248 N 248
N
Sbjct: 139 N 139
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA 187
R A AV K +GN + EAI+ Y AI+ P++ VF++N + C++ +
Sbjct: 17 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIE 76
Query: 188 DCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
T +L++ + KA RRA+A SL +F DA D L VL+L + A IE L R L
Sbjct: 77 FTTKALEIKPDHSKALLRRASANESLGNFTDAMFD-LSVLSLNGDFDGASIE-PMLERNL 134
Query: 248 N 248
N
Sbjct: 135 N 135
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA 191
A+ K++GN+ + K+ +AI+ YN A++ D VF++N + C++ + + T
Sbjct: 6 ALALKDKGNQFFRNKKYDDAIKYYNWALE-LKEDPVFYSNLSACYVSVGDLKKVVEMSTK 64
Query: 192 SLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+L+L Y K RRA+A L F DA D L VL+L + A IE L R LN
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFD-LSVLSLNGDFNDASIE-PMLERNLN 119
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 17/133 (12%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF-----------------FA 170
RI +A K GN L KE K EA+++Y +AI D +F
Sbjct: 175 RIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHL 234
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
N A C +K+K Y A C L + KA RR A+ L + AR D K
Sbjct: 235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294
Query: 231 PNNKQAEIELAEL 243
P++K EL L
Sbjct: 295 PDDKAIRRELRAL 307
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN K+G + +AIE Y A++ P++A + N + K +Y A +L+LD
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
KA+ RR A ++ A +D K L L+PNN +A+ L +K
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQK 123
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
+G + + W A++ Y I+ P DA ++NRA K+ ++ A ADC +++ D
Sbjct: 10 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 69
Query: 198 TYVKAYQRRAAARRSLNHFEDARK--DILKVLALEPNNKQAEIELAEL 243
+V+AY R+A A+ ++ + A + D + E NN + E+ +L
Sbjct: 70 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 117
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
+G + + W A++ Y I+ P DA ++NRA K+ ++ A ADC +++ D
Sbjct: 145 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204
Query: 198 TYVKAYQRRAAARRSLNHFEDARK--DILKVLALEPNNKQAEIELAEL 243
+V+AY R+A A+ ++ + A + D + E NN + E+ +L
Sbjct: 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSA 185
K +GNK K ++ EAIE YN A + + D + NRA + Y +A
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETA 57
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 16/122 (13%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-----DAVFF-----------AN 171
++ SA KE+GN+ K+ + EAI KY A+ + H D + N
Sbjct: 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93
Query: 172 RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231
A C+ K K+Y A + LK+D VKA + A E+A++++ K +L P
Sbjct: 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153
Query: 232 NN 233
NN
Sbjct: 154 NN 155
>pdb|1PNU|H Chain H, Crystal Structure Of A Streptomycin Dependent Ribosome
From Escherichia Coli, 50s Subunit Of 70s Ribosome.
This File, 1pnu, Contains Only Molecules Of The 50s
Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna,
And A-Site Trna Are In The Pdb File 1pns.
pdb|1PNY|H Chain H, Crystal Structure Of The Wild Type Ribosome From E.
Coli, 50s Subunit Of 70s Ribosome. This File, 1pny,
Contains Only Molecules Of The 50s Ribosomal Subunit.
The 30s Subunit Is In The Pdb File 1pnx.
pdb|1VOR|K Chain K, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOU|K Chain K, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOW|K Chain K, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOY|K Chain K, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VP0|K Chain K, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400
Length = 143
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
W + DA A +I+ ++G+H+P + P GD V+V+N+ +AL G + + Y
Sbjct: 13 WVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVY 72
Query: 77 FHHTGYPGGVSWTLA 91
+TGY GG+ A
Sbjct: 73 TRYTGYQGGLKTETA 87
>pdb|1NKW|H Chain H, Crystal Structure Of The Large Ribosomal Subunit From
Deinococcus Radiodurans
pdb|1NWX|H Chain H, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Abt-773
pdb|1NWY|H Chain H, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Azithromycin
pdb|1SM1|H Chain H, Complex Of The Large Ribosomal Subunit From Deinococcus
Radiodurans With Quinupristin And Dalfopristin
pdb|1XBP|H Chain H, Inhibition Of Peptide Bond Formation By Pleuromutilins:
The Structure Of The 50s Ribosomal Subunit From
Deinococcus Radiodurans In Complex With Tiamulin
pdb|2ZJP|G Chain G, Thiopeptide Antibiotic Nosiheptide Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|2ZJQ|G Chain G, Interaction Of L7 With L11 Induced By Microccocin Binding
To The Deinococcus Radiodurans 50s Subunit
pdb|2ZJR|G Chain G, Refined Native Structure Of The Large Ribosomal Subunit
(50s) From Deinococcus Radiodurans
pdb|3CF5|G Chain G, Thiopeptide Antibiotic Thiostrepton Bound To The Large
Ribosomal Subunit Of Deinococcus Radiodurans
pdb|3DLL|G Chain G, The Oxazolidinone Antibiotics Perturb The Ribosomal
Peptidyl-Transferase Center And Effect Trna Positioning
pdb|3PIO|G Chain G, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
pdb|3PIP|G Chain G, Crystal Structure Of The Synergistic Antibiotic Pair
Lankamycin And Lankacidin In Complex With The Large
Ribosomal Subunit
Length = 174
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
W + DA A +I+ ++G+H+P + P GD V+V+N+ +AL G + + Y
Sbjct: 41 WVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVY 100
Query: 77 FHHTGYPGGVSWTLAWQ 93
+TGY GG+ A +
Sbjct: 101 TRYTGYQGGLKTETARE 117
>pdb|1VSA|H Chain H, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|3D5B|N Chain N, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|N Chain N, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|N Chain N, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|N Chain N, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400
Length = 163
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
W + DA+ + A I+ L+G+H+P + P GD V+V+N+ I + G + +++ Y
Sbjct: 36 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 95
Query: 77 FHHTGYPGGV 86
++GYPGG+
Sbjct: 96 TRYSGYPGGL 105
>pdb|2J01|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of
4). This File Contains The 50s Subunit From Molecule I.
pdb|2J03|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of
4). This File Contains The 50s Subunit From Molecule
Ii.
pdb|2HGJ|M Chain M, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome Showing How The 16s 3'-End Mimicks Mrna E And
P Codons. This Entry 2hgj Contains 50s Ribosomal
Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb
Entry 2hgi.
pdb|2HGQ|M Chain M, Crystal Structure Of The 70s Thermus Thermophilus
Ribosome With Translocated And Rotated Shine-Dalgarno
Duplex. This Entry 2hgq Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
2hgp.
pdb|2HGU|M Chain M, 70s T.Th. Ribosome Functional Complex With Mrna And E-
And P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|2V47|N Chain N, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|N Chain N, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe
And Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|2WDI|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|N Chain N, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|2WH4|N Chain N, Insights Into Translational Termination From The
Structure Of Rf2 Bound To The Ribosome
pdb|3HUX|N Chain N, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|N Chain N, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|N Chain N, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of
4).
pdb|2WRL|N Chain N, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|N Chain N, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|N Chain N, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|N Chain N, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|N Chain N, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|N Chain N, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|N Chain N, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|N Chain N, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule I
pdb|3KNK|N Chain N, The Structures Of Viomycin Bound To The 70s Ribosome.
This File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|N Chain N, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|N Chain N, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|M Chain M, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|M Chain M, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|M Chain M, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule
B. The 30s Subunit Can Be Found In Pdb Entry 3i9b.
Molecule A In The S Asymmetric Unit Is Deposited As
3i9d (30s) And 3i9e (50s)
pdb|3I9E|M Chain M, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule
A. The 30s Subunit Can Be Found In Pdb Entry 3i9d.
Molecule B In The S Asymmetric Unit Is Deposited As
3i9b (30s) And 3i9c (50s)
pdb|2X9S|N Chain N, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|N Chain N, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2XG0|N Chain N, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|N Chain N, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|N Chain N, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHK|N Chain N, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit
Of One 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes.
pdb|3OHZ|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|N Chain N, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|N Chain N, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The
70s Ribosome With A Gtp Analog
pdb|2XTG|N Chain N, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|N Chain N, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|N Chain N, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|N Chain N, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|N Chain N, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|N Chain N, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y13|N Chain N, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|N Chain N, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound
To A Cognate Codon On The 70s Ribosome.
pdb|2Y17|N Chain N, Ef-Tu Complex 3
pdb|2Y19|N Chain N, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|3ZVP|N Chain N, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release
Factor 3
pdb|3UXQ|N Chain N, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|N Chain N, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UYG|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex
pdb|3UZ1|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin
pdb|3UZ2|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Leu Complex With Paromomycin.
pdb|3UZ8|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex
pdb|3UZH|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex.
pdb|3UZK|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The
Near-Cognate Trna-Tyr Complex With Paromomycin
pdb|3UZN|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The
Near-cognate Trna-tyr Complex With Paromomycin
pdb|4ABS|N Chain N, Complex Of Smpb, A Tmrna Fragment And
Ef-Tu-Gdp-Kirromycin With The 70s Ribosome
pdb|4DHA|N Chain N, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|N Chain N, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|N Chain N, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|N Chain N, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|N Chain N, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|N Chain N, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|N Chain N, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 1st Ribosome In The Asu
pdb|3V2F|N Chain N, Crystal Structure Of Yfia Bound To The 70s Ribosome.
This Pdb Entry Contains Coordinates For The 50s Subunit
Of The 2nd Ribosome In The Asu
pdb|4G5L|M Chain M, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|M Chain M, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|M Chain M, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|M Chain M, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 140
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
W + DA+ + A I+ L+G+H+P + P GD V+V+N+ I + G + +++ Y
Sbjct: 13 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 72
Query: 77 FHHTGYPGGV 86
++GYPGG+
Sbjct: 73 TRYSGYPGGL 82
>pdb|1VSP|H Chain H, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
Length = 140
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
W + DA+ + A I+ L+G+H+P + P GD V+V+N+ I + G + +++ Y
Sbjct: 13 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 72
Query: 77 FHHTGYPGGV 86
++GYPGG+
Sbjct: 73 TRYSGYPGGL 82
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
KEQGN L K+G + EA+ Y+ I P + V ++N+A+ +K+ Y A C L+
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67
Query: 196 DNT 198
+T
Sbjct: 68 TST 70
>pdb|3FIN|N Chain N, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit
Length = 139
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
W + DA+ + A I+ L+G+H+P + P GD V+V+N+ I + G + +++ Y
Sbjct: 13 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 72
Query: 77 FHHTGYPGGV 86
++GYPGG+
Sbjct: 73 TRYSGYPGGL 82
>pdb|3MRZ|J Chain J, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3ms0. Molecule A In The Same Asymmetric Unit Is
Deposited As 3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|J Chain J, Recognition Of The Amber Stop Codon By Release Factor
Rf1. This Entry 3ms1 Contains 50s Ribosomal Subunit.
The 30s Ribosomal Subunit Can Be Found In Pdb Entry
3mr8. Molecule B In The Same Asymmetric Unit Is
Deposited As 3mrz (50s) And 3ms0 (30s)
Length = 139
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
W + DA+ + A I+ L+G+H+P + P GD V+V+N+ I + G + +++ Y
Sbjct: 12 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 71
Query: 77 FHHTGYPGGV 86
++GYPGG+
Sbjct: 72 TRYSGYPGGL 81
>pdb|3TVE|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|M Chain M, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 138
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
W + DA+ + A I+ L+G+H+P + P GD V+V+N+ I + G + +++ Y
Sbjct: 13 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 72
Query: 77 FHHTGYPGGV 86
++GYPGG+
Sbjct: 73 TRYSGYPGGL 82
>pdb|3PYO|J Chain J, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s
Ribosome.
pdb|3PYR|J Chain J, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|J Chain J, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|J Chain J, Crystal Structure Of A Complex Containing Domain 3 Of
Crpv Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 137
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
W + DA+ + A I+ L+G+H+P + P GD V+V+N+ I + G + +++ Y
Sbjct: 12 WVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIY 71
Query: 77 FHHTGYPGGV 86
++GYPGG+
Sbjct: 72 TRYSGYPGGL 81
>pdb|3BBO|L Chain L, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 250
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
W++ DA A I+ H++G++ Y P D G VIV+N+ +A+ G + ++ Y
Sbjct: 114 WYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLY 173
Query: 77 FHHTGYPGGV 86
H+G PGG+
Sbjct: 174 RRHSGRPGGL 183
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 16/128 (12%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAI----------------QTYPHDAVFFANRALCFLKM 179
K GN K W AI+KY + + P N C LKM
Sbjct: 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM 286
Query: 180 KNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE 239
++ A C +L++D + KA RRA + L ++ A D+ K + P +K + E
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE 346
Query: 240 LAELNRKL 247
L ++ +K+
Sbjct: 347 LLKVKQKI 354
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN K+G + EAIE Y A++ P++A + N + K +Y A +L+LD
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
+A+ A +++A + K L L+PNN +A+ L +K
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN K+G + EAIE Y A++ YP++A + N + K +Y A +L+L
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
+A+ A +++A + K L L PNN +A+ L +K
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQK 123
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K +GN + ++ +AI+ Y A+ P + ++ +NRA + + A D + +
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233
D Y KA+ R AR + ++ A++ K + E N
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNG 112
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN K+G + EAIE Y A++ P A + N + K +Y A +L+LD
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+A+ A +++A + K L L+P + +A
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 42/93 (45%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN K+G + EAIE Y A++ P A + N + K +Y A +L+LD
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231
+A+ A +++A + K L L+P
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
E G KL+ G+ +A+ +++ A+ P + + + RA FL +A D T + L
Sbjct: 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALK 67
Query: 197 NTYVKAYQRRA---AARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240
+ A +R + L+ ED K +LK E K+AE +L
Sbjct: 68 XDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 137 EQGNKLVKEGKWGEAIEKY--------NVAIQTYPHD----------AVFFANRALCFLK 178
++GN+L +EG EA KY N+ ++ P N C L
Sbjct: 19 QEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLV 78
Query: 179 MKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231
++ Y C++ L + VKAY +R A ++ + ++A+ D KVL L+P
Sbjct: 79 VEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 131
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 18/113 (15%)
Query: 137 EQGNKLVKEGKWGEAIEKY--------NVAIQTYPHD----------AVFFANRALCFLK 178
++GN+L +EG EA KY N+ ++ P N C L
Sbjct: 13 QEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLV 72
Query: 179 MKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231
++ Y C++ L + VKAY +R A ++ + ++A+ D KVL L+P
Sbjct: 73 VEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN K+G + EAIE Y A++ P++A + N + K +Y A +L+LD
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 199 YVKAYQRRAAARR 211
+A Q A++
Sbjct: 76 NAEAKQNLGNAKQ 88
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 19/118 (16%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVA------------------IQTYPHDAVFF 169
++ S +++GN+L + + EAI+ Y A ++ + +
Sbjct: 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLY 66
Query: 170 ANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVL 227
AN + C+L + + AE + LK + T KA RRA AR + ++A +D LK+L
Sbjct: 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEED-LKLL 123
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 31.6 bits (70), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 28/58 (48%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
GN K+G + EAIE Y A++ P A + N + K +Y A +L+LD
Sbjct: 10 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 45/100 (45%)
Query: 142 LVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK 201
L ++GK EA+ Y AI+ P A ++N +M++ A T +++++ +
Sbjct: 53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112
Query: 202 AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
A+ A+ + + +A L L+P+ A LA
Sbjct: 113 AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
>pdb|3ZGE|A Chain A, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
pdb|3ZGE|B Chain B, Greater Efficiency Of Photosynthetic Carbon Fixation Due
To Single Amino Acid Substitution
Length = 990
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 6 RVKQWNTFARIWHIY-DAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNS 61
R K +NT R H+ D K P E+ + L + Y L DCGDHVI S
Sbjct: 397 RDKLYNTRERSRHLLVDGKSDIPDEAVYTNVEQLLEPLELCYRSLCDCGDHVIADGS 453
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190
+A+ K+ GN K+ + +A Y+ AI+ P + F+ N+A + + K + C
Sbjct: 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCE 66
Query: 191 ASLKLDNTYVKAYQRRA-AARRSLNHFE 217
++++ Y+ A A R+ N F+
Sbjct: 67 KAVEVGRETRADYKLIAKAMSRAGNAFQ 94
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 27.3 bits (59), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190
A+ KE GN K+ + A++ Y+ A + P + + N+A + + +Y C
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 191 ASLKLDNTYVKAYQR--RAAARRSLNHFEDAR 220
++++ + Y++ +A AR ++F++ +
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEK 94
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/92 (20%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190
A+ KE GN K+ + A++ Y+ A + P + + N+A + + +Y C
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCE 62
Query: 191 ASLKLDNTYVKAYQR--RAAARRSLNHFEDAR 220
++++ + Y++ +A AR ++F++ +
Sbjct: 63 KAIEVGRENREDYRQIAKAYARIGNSYFKEEK 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,236,742
Number of Sequences: 62578
Number of extensions: 305281
Number of successful extensions: 815
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 72
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)