Query psy6284
Match_columns 270
No_of_seqs 318 out of 2236
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 22:31:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3203|consensus 100.0 2.9E-33 6.2E-38 201.4 6.0 102 6-107 12-113 (165)
2 CHL00159 rpl13 ribosomal prote 100.0 4.8E-30 1E-34 188.3 8.2 100 8-107 7-106 (143)
3 PRK09216 rplM 50S ribosomal pr 100.0 7.8E-30 1.7E-34 187.9 7.5 100 8-107 6-105 (144)
4 TIGR01066 rplM_bact ribosomal 100.0 1E-29 2.3E-34 186.6 7.6 100 8-107 4-103 (140)
5 COG0102 RplM Ribosomal protein 100.0 1.3E-28 2.7E-33 179.1 7.3 99 9-107 7-106 (148)
6 PLN00205 ribisomal protein L13 100.0 2.1E-28 4.6E-33 186.3 8.2 97 11-107 11-107 (191)
7 cd00392 Ribosomal_L13 Ribosoma 100.0 1.8E-28 3.8E-33 174.7 7.1 91 17-107 1-91 (114)
8 PF00572 Ribosomal_L13: Riboso 99.9 7E-27 1.5E-31 170.2 3.8 91 17-107 1-91 (128)
9 KOG0543|consensus 99.9 5.9E-25 1.3E-29 184.9 9.1 218 31-253 104-344 (397)
10 KOG0553|consensus 99.9 2.3E-23 5E-28 168.9 15.1 125 127-251 76-200 (304)
11 PRK15359 type III secretion sy 99.8 1E-17 2.2E-22 127.0 15.4 114 135-248 27-140 (144)
12 KOG0548|consensus 99.8 4.1E-18 8.8E-23 147.6 14.6 120 130-249 356-475 (539)
13 KOG4234|consensus 99.8 1.7E-17 3.8E-22 127.3 13.4 127 127-253 90-221 (271)
14 PLN03088 SGT1, suppressor of 99.7 6.2E-17 1.3E-21 140.5 16.7 116 134-249 4-119 (356)
15 KOG4648|consensus 99.7 2.8E-17 6.1E-22 135.6 10.2 117 129-245 94-210 (536)
16 PRK15363 pathogenicity island 99.7 2.4E-15 5.3E-20 112.8 15.6 114 132-245 35-151 (157)
17 KOG4626|consensus 99.7 9E-17 2E-21 141.4 9.0 131 132-262 286-419 (966)
18 KOG0547|consensus 99.7 6.6E-16 1.4E-20 132.6 13.0 124 124-247 107-231 (606)
19 KOG0548|consensus 99.7 4.2E-16 9.2E-21 135.2 11.9 113 132-244 2-114 (539)
20 KOG4626|consensus 99.7 4.9E-16 1.1E-20 136.8 12.1 133 132-264 354-489 (966)
21 TIGR02552 LcrH_SycD type III s 99.6 1.4E-14 3.1E-19 108.5 15.9 113 133-245 18-130 (135)
22 PRK11189 lipoprotein NlpI; Pro 99.6 8.8E-15 1.9E-19 124.2 16.0 124 131-255 63-186 (296)
23 TIGR00990 3a0801s09 mitochondr 99.6 1.1E-14 2.4E-19 135.6 16.6 122 134-255 333-454 (615)
24 PRK10370 formate-dependent nit 99.6 8.6E-15 1.9E-19 116.8 13.1 111 130-240 71-184 (198)
25 TIGR00990 3a0801s09 mitochondr 99.6 2.7E-14 5.8E-19 133.1 16.7 131 132-262 365-498 (615)
26 KOG0545|consensus 99.6 1.7E-14 3.6E-19 114.2 12.9 152 96-247 141-312 (329)
27 KOG0550|consensus 99.6 5E-15 1.1E-19 124.9 10.5 119 129-248 246-368 (486)
28 PRK15359 type III secretion sy 99.6 1.8E-14 3.8E-19 109.3 10.7 110 152-264 13-125 (144)
29 KOG1126|consensus 99.6 3.6E-15 7.9E-20 132.3 7.5 135 132-266 421-558 (638)
30 COG3063 PilF Tfp pilus assembl 99.6 1.5E-13 3.2E-18 108.2 15.3 135 130-264 33-172 (250)
31 PRK10370 formate-dependent nit 99.6 1.9E-13 4.2E-18 109.0 15.7 125 144-268 51-181 (198)
32 KOG1155|consensus 99.5 5E-14 1.1E-18 120.5 11.5 118 138-255 336-453 (559)
33 TIGR01077 L13_A_E ribosomal pr 99.5 4.9E-15 1.1E-19 109.6 4.6 78 18-107 1-78 (142)
34 PRK12370 invasion protein regu 99.5 3.1E-13 6.7E-18 124.3 16.1 123 133-255 339-462 (553)
35 PTZ00068 60S ribosomal protein 99.5 1.5E-14 3.2E-19 112.3 5.1 80 16-107 4-83 (202)
36 TIGR02795 tol_pal_ybgF tol-pal 99.5 1.2E-12 2.5E-17 95.5 14.4 108 133-240 3-116 (119)
37 PRK12370 invasion protein regu 99.5 5.2E-13 1.1E-17 122.8 15.3 111 145-255 317-427 (553)
38 PRK09782 bacteriophage N4 rece 99.5 7.3E-13 1.6E-17 127.5 16.8 125 139-264 583-710 (987)
39 TIGR02521 type_IV_pilW type IV 99.5 2.6E-12 5.7E-17 103.9 16.3 125 131-255 64-190 (234)
40 PRK09782 bacteriophage N4 rece 99.5 8.2E-13 1.8E-17 127.2 14.9 124 132-255 609-732 (987)
41 PRK15179 Vi polysaccharide bio 99.5 1.1E-12 2.4E-17 122.0 15.2 126 130-255 84-209 (694)
42 TIGR02552 LcrH_SycD type III s 99.5 6.4E-13 1.4E-17 99.5 11.2 103 153-255 4-106 (135)
43 KOG1126|consensus 99.5 6.8E-13 1.5E-17 118.0 12.4 133 131-263 488-623 (638)
44 TIGR02521 type_IV_pilW type IV 99.5 3.3E-12 7.2E-17 103.3 15.5 124 132-255 99-224 (234)
45 PF13414 TPR_11: TPR repeat; P 99.5 3.8E-13 8.2E-18 88.7 8.0 67 165-231 2-69 (69)
46 PRK11189 lipoprotein NlpI; Pro 99.5 1.5E-12 3.3E-17 110.5 13.5 119 146-264 40-165 (296)
47 KOG0551|consensus 99.4 8E-13 1.7E-17 109.0 11.0 111 130-240 79-193 (390)
48 KOG0547|consensus 99.4 5.5E-13 1.2E-17 114.9 10.2 124 132-255 326-449 (606)
49 PF13429 TPR_15: Tetratricopep 99.4 7.1E-13 1.5E-17 111.8 10.7 125 131-255 145-269 (280)
50 COG5010 TadD Flp pilus assembl 99.4 5.1E-12 1.1E-16 101.4 14.7 123 133-255 101-223 (257)
51 PRK02603 photosystem I assembl 99.4 8.2E-12 1.8E-16 97.6 15.7 105 129-233 32-153 (172)
52 PRK15174 Vi polysaccharide exp 99.4 3.2E-12 6.9E-17 119.7 15.7 118 138-255 218-339 (656)
53 COG3063 PilF Tfp pilus assembl 99.4 3E-12 6.5E-17 100.8 12.9 124 132-255 69-194 (250)
54 KOG4642|consensus 99.4 4E-13 8.8E-18 106.0 8.0 114 131-244 9-127 (284)
55 PRK15331 chaperone protein Sic 99.4 6.2E-12 1.4E-16 94.9 14.1 116 133-249 38-153 (165)
56 cd00189 TPR Tetratricopeptide 99.4 3.8E-12 8.3E-17 87.6 12.2 99 134-232 2-100 (100)
57 PF13414 TPR_11: TPR repeat; P 99.4 4.6E-13 9.9E-18 88.3 7.0 67 131-197 2-69 (69)
58 PRK15174 Vi polysaccharide exp 99.4 4.1E-12 8.9E-17 118.9 16.0 132 132-263 246-384 (656)
59 TIGR03302 OM_YfiO outer membra 99.4 4.3E-12 9.4E-17 104.1 14.4 124 132-255 33-187 (235)
60 KOG0624|consensus 99.4 1.8E-12 3.9E-17 107.5 11.9 113 131-243 37-152 (504)
61 KOG1155|consensus 99.4 2.7E-12 5.9E-17 110.0 12.9 123 133-255 365-487 (559)
62 PRK06394 rpl13p 50S ribosomal 99.4 3.9E-13 8.4E-18 99.9 6.3 76 17-107 4-83 (146)
63 KOG0376|consensus 99.4 3.8E-13 8.1E-18 116.1 7.1 117 132-248 4-120 (476)
64 KOG1125|consensus 99.4 1.3E-12 2.9E-17 114.6 10.2 120 132-251 430-559 (579)
65 TIGR03302 OM_YfiO outer membra 99.4 9.7E-12 2.1E-16 102.1 14.7 123 133-255 71-224 (235)
66 PLN02789 farnesyltranstransfer 99.4 1.7E-11 3.6E-16 104.6 16.2 118 130-247 69-189 (320)
67 CHL00033 ycf3 photosystem I as 99.4 4.4E-11 9.5E-16 93.1 16.5 104 131-234 34-154 (168)
68 PRK15363 pathogenicity island 99.4 5.6E-12 1.2E-16 94.8 9.7 97 159-255 27-124 (157)
69 PLN02789 farnesyltranstransfer 99.4 1.1E-11 2.3E-16 105.8 12.7 123 142-264 47-175 (320)
70 PF12895 Apc3: Anaphase-promot 99.4 2.9E-12 6.3E-17 87.9 7.1 82 144-226 1-84 (84)
71 PRK10049 pgaA outer membrane p 99.3 3.5E-11 7.5E-16 114.8 16.6 123 132-255 49-171 (765)
72 PRK11447 cellulose synthase su 99.3 2E-11 4.4E-16 121.2 15.5 127 137-263 274-417 (1157)
73 PRK11447 cellulose synthase su 99.3 3.4E-11 7.3E-16 119.7 17.1 121 135-255 354-516 (1157)
74 TIGR02917 PEP_TPR_lipo putativ 99.3 4E-11 8.6E-16 115.4 16.0 122 133-255 771-892 (899)
75 TIGR02917 PEP_TPR_lipo putativ 99.3 6.3E-11 1.4E-15 114.0 17.0 125 131-255 124-248 (899)
76 KOG2076|consensus 99.3 7.3E-11 1.6E-15 108.3 16.2 124 132-255 139-262 (895)
77 PF13432 TPR_16: Tetratricopep 99.3 1.5E-11 3.2E-16 80.0 7.8 64 171-234 2-65 (65)
78 PRK10803 tol-pal system protei 99.3 2E-10 4.3E-15 95.3 16.3 111 133-243 143-260 (263)
79 KOG4555|consensus 99.3 2.3E-10 5E-15 82.4 14.3 103 129-231 40-146 (175)
80 PRK11788 tetratricopeptide rep 99.3 1.2E-10 2.6E-15 102.6 15.9 121 134-255 182-303 (389)
81 PRK11788 tetratricopeptide rep 99.3 8.2E-11 1.8E-15 103.6 14.8 121 135-255 144-270 (389)
82 KOG1125|consensus 99.3 3E-11 6.4E-16 106.2 9.9 89 167-255 431-519 (579)
83 KOG0553|consensus 99.3 2.7E-11 5.9E-16 99.0 8.9 97 167-263 82-181 (304)
84 PF13432 TPR_16: Tetratricopep 99.2 4E-11 8.7E-16 77.9 7.6 64 137-200 2-65 (65)
85 COG4783 Putative Zn-dependent 99.2 4.4E-10 9.6E-15 97.4 14.6 123 133-255 307-429 (484)
86 KOG1173|consensus 99.2 2.4E-10 5.2E-15 100.4 11.4 76 169-244 458-533 (611)
87 KOG1173|consensus 99.2 2.8E-10 6.2E-15 99.9 11.7 132 133-265 381-523 (611)
88 KOG0624|consensus 99.2 1.8E-09 3.9E-14 90.0 15.7 124 119-242 142-265 (504)
89 KOG2003|consensus 99.2 1.2E-10 2.6E-15 100.0 8.9 124 132-255 490-613 (840)
90 PF13512 TPR_18: Tetratricopep 99.2 1.5E-09 3.2E-14 80.4 13.4 107 133-239 11-138 (142)
91 COG4235 Cytochrome c biogenesi 99.2 1.3E-09 2.8E-14 89.7 14.3 118 130-247 154-274 (287)
92 PF13429 TPR_15: Tetratricopep 99.2 1.4E-10 3E-15 97.8 8.6 133 132-264 110-247 (280)
93 PRK15179 Vi polysaccharide bio 99.1 1.1E-09 2.3E-14 102.2 15.1 107 130-236 118-224 (694)
94 COG5010 TadD Flp pilus assembl 99.1 6.4E-10 1.4E-14 89.4 11.4 120 136-255 70-189 (257)
95 PF13371 TPR_9: Tetratricopept 99.1 4.2E-10 9.1E-15 74.8 8.5 70 173-242 2-71 (73)
96 PRK14574 hmsH outer membrane p 99.1 1.3E-09 2.8E-14 103.5 14.9 123 133-255 35-157 (822)
97 KOG4162|consensus 99.1 7.9E-10 1.7E-14 100.2 12.2 122 134-255 652-775 (799)
98 PRK10153 DNA-binding transcrip 99.1 2.8E-09 6.2E-14 96.6 15.7 134 131-265 338-487 (517)
99 PLN03088 SGT1, suppressor of 99.1 6.9E-10 1.5E-14 96.5 11.3 95 169-263 5-102 (356)
100 COG4785 NlpI Lipoprotein NlpI, 99.1 6E-10 1.3E-14 87.2 9.5 114 128-241 61-174 (297)
101 PRK10049 pgaA outer membrane p 99.1 2.7E-09 5.9E-14 101.9 16.2 126 137-263 20-148 (765)
102 KOG0550|consensus 99.1 1.6E-10 3.4E-15 98.1 6.8 125 131-255 202-342 (486)
103 KOG1128|consensus 99.1 3.1E-10 6.6E-15 102.3 8.6 122 134-255 487-608 (777)
104 CHL00033 ycf3 photosystem I as 99.1 8E-10 1.7E-14 86.0 9.3 115 139-253 6-132 (168)
105 PF14559 TPR_19: Tetratricopep 99.1 5.2E-10 1.1E-14 73.2 7.1 64 178-241 3-66 (68)
106 PF14559 TPR_19: Tetratricopep 99.1 5.1E-10 1.1E-14 73.3 6.9 67 142-208 1-67 (68)
107 cd00189 TPR Tetratricopeptide 99.1 1.3E-09 2.9E-14 74.7 9.3 88 168-255 2-89 (100)
108 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 8.8E-10 1.9E-14 95.8 9.7 68 128-195 71-141 (453)
109 PRK11906 transcriptional regul 99.0 4.8E-09 1E-13 91.4 13.7 129 135-263 258-404 (458)
110 TIGR02795 tol_pal_ybgF tol-pal 99.0 3E-09 6.5E-14 77.3 10.7 90 166-255 2-97 (119)
111 PF13371 TPR_9: Tetratricopept 99.0 2.4E-09 5.2E-14 71.1 9.1 70 139-208 2-71 (73)
112 COG1729 Uncharacterized protei 99.0 1.5E-08 3.2E-13 82.6 15.1 111 133-243 142-258 (262)
113 KOG2002|consensus 99.0 6.1E-09 1.3E-13 96.7 13.7 117 130-246 305-426 (1018)
114 KOG1129|consensus 99.0 8.4E-10 1.8E-14 91.4 7.3 115 139-253 331-448 (478)
115 PF06552 TOM20_plant: Plant sp 99.0 5.6E-09 1.2E-13 79.8 11.2 96 148-243 7-123 (186)
116 PF09976 TPR_21: Tetratricopep 99.0 3.2E-08 6.9E-13 75.0 15.4 127 128-255 7-139 (145)
117 KOG1308|consensus 99.0 3E-10 6.4E-15 94.4 4.1 120 123-243 105-224 (377)
118 PRK10866 outer membrane biogen 99.0 2.4E-08 5.2E-13 82.2 15.3 112 132-243 32-170 (243)
119 COG4235 Cytochrome c biogenesi 99.0 8.7E-09 1.9E-13 84.9 12.3 110 146-255 136-248 (287)
120 KOG4162|consensus 99.0 1.2E-08 2.5E-13 92.8 14.1 106 130-235 682-789 (799)
121 PRK14574 hmsH outer membrane p 99.0 1.5E-08 3.2E-13 96.4 14.9 122 133-255 103-224 (822)
122 KOG1156|consensus 99.0 5.7E-09 1.2E-13 93.2 11.1 122 134-255 9-130 (700)
123 KOG3060|consensus 99.0 3.4E-08 7.4E-13 79.2 14.4 113 135-247 123-238 (289)
124 PRK02603 photosystem I assembl 99.0 1.6E-08 3.4E-13 79.0 12.6 87 164-250 33-122 (172)
125 PF13525 YfiO: Outer membrane 99.0 3.8E-08 8.2E-13 79.0 14.8 113 132-244 5-137 (203)
126 KOG3060|consensus 99.0 3.4E-08 7.3E-13 79.2 14.1 117 135-251 89-205 (289)
127 PF09976 TPR_21: Tetratricopep 99.0 1.6E-08 3.5E-13 76.7 11.9 95 132-227 48-145 (145)
128 cd05804 StaR_like StaR_like; a 98.9 1.7E-08 3.7E-13 87.8 12.9 121 135-255 46-207 (355)
129 PF12688 TPR_5: Tetratrico pep 98.9 4.9E-08 1.1E-12 71.0 13.1 95 134-228 3-103 (120)
130 TIGR00540 hemY_coli hemY prote 98.9 5.5E-08 1.2E-12 86.4 15.8 128 128-255 80-208 (409)
131 COG4783 Putative Zn-dependent 98.9 6.9E-08 1.5E-12 84.0 15.2 116 132-247 340-455 (484)
132 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 3.1E-08 6.8E-13 86.3 12.0 70 160-229 69-141 (453)
133 COG2956 Predicted N-acetylgluc 98.9 7.8E-08 1.7E-12 79.7 13.2 120 136-255 145-270 (389)
134 PRK14720 transcript cleavage f 98.8 3.3E-08 7.2E-13 93.6 12.4 120 133-255 32-170 (906)
135 TIGR00540 hemY_coli hemY prote 98.8 6.2E-08 1.3E-12 86.1 13.4 124 131-255 262-391 (409)
136 PF12895 Apc3: Anaphase-promot 98.8 4.2E-09 9.1E-14 72.1 3.5 76 179-255 2-79 (84)
137 PRK10747 putative protoheme IX 98.8 2.4E-07 5.3E-12 82.0 15.5 127 128-255 80-208 (398)
138 cd05804 StaR_like StaR_like; a 98.8 1.2E-07 2.5E-12 82.6 13.0 98 134-231 116-217 (355)
139 KOG0543|consensus 98.8 1.6E-07 3.5E-12 80.2 13.2 99 133-231 258-357 (397)
140 KOG1128|consensus 98.8 8.8E-08 1.9E-12 86.8 11.7 126 129-255 421-574 (777)
141 KOG1840|consensus 98.8 8.7E-08 1.9E-12 85.9 11.5 124 132-255 241-388 (508)
142 PF13424 TPR_12: Tetratricopep 98.8 1E-08 2.2E-13 69.0 4.3 64 166-229 5-75 (78)
143 PF12688 TPR_5: Tetratrico pep 98.7 1.6E-07 3.4E-12 68.4 10.4 89 167-255 2-96 (120)
144 PRK15331 chaperone protein Sic 98.7 5E-08 1.1E-12 73.9 7.7 98 158-255 29-126 (165)
145 KOG2002|consensus 98.7 1.9E-07 4.1E-12 87.1 12.8 117 132-248 270-390 (1018)
146 PF09295 ChAPs: ChAPs (Chs5p-A 98.7 3.3E-07 7.2E-12 80.1 13.3 110 143-255 180-289 (395)
147 PRK11906 transcriptional regul 98.7 3E-07 6.5E-12 80.4 12.5 98 145-242 317-414 (458)
148 PRK10803 tol-pal system protei 98.7 2.6E-07 5.6E-12 76.8 11.4 90 166-255 142-238 (263)
149 KOG1174|consensus 98.7 1.4E-07 3.1E-12 80.6 9.9 124 132-255 232-389 (564)
150 COG4700 Uncharacterized protei 98.7 3.6E-06 7.9E-11 64.8 16.1 121 132-253 89-212 (251)
151 PRK10747 putative protoheme IX 98.7 7.9E-07 1.7E-11 78.8 14.3 120 132-255 263-382 (398)
152 PF13424 TPR_12: Tetratricopep 98.7 1E-07 2.2E-12 64.1 6.6 65 131-195 4-75 (78)
153 COG2956 Predicted N-acetylgluc 98.6 5.5E-07 1.2E-11 74.8 11.9 136 131-266 106-249 (389)
154 KOG4648|consensus 98.6 3.5E-08 7.5E-13 82.4 5.0 95 169-263 100-197 (536)
155 KOG2003|consensus 98.6 6.9E-07 1.5E-11 77.3 12.8 125 131-255 557-681 (840)
156 KOG2076|consensus 98.6 6.8E-07 1.5E-11 82.8 13.5 100 132-231 173-272 (895)
157 KOG0495|consensus 98.6 8.6E-07 1.9E-11 79.8 13.1 130 135-264 587-752 (913)
158 KOG1127|consensus 98.6 1E-07 2.2E-12 89.0 7.4 110 146-255 472-617 (1238)
159 KOG1840|consensus 98.6 8.7E-07 1.9E-11 79.6 13.0 126 130-255 281-430 (508)
160 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1E-06 2.3E-11 77.0 12.8 103 136-238 204-306 (395)
161 KOG1156|consensus 98.6 3.8E-07 8.3E-12 81.8 10.2 123 133-255 42-164 (700)
162 PRK10153 DNA-binding transcrip 98.6 1.1E-06 2.5E-11 79.8 13.3 88 147-235 399-488 (517)
163 KOG1129|consensus 98.6 4.1E-07 8.9E-12 75.7 9.2 108 137-244 261-368 (478)
164 PF04733 Coatomer_E: Coatomer 98.5 1.9E-06 4.1E-11 72.8 12.1 119 137-255 136-256 (290)
165 PF12569 NARP1: NMDA receptor- 98.5 3.8E-06 8.3E-11 76.1 14.7 45 132-176 38-82 (517)
166 PF13428 TPR_14: Tetratricopep 98.5 3E-07 6.5E-12 54.5 5.2 42 201-242 2-43 (44)
167 KOG1174|consensus 98.5 1.3E-06 2.7E-11 74.9 10.5 111 131-241 299-409 (564)
168 KOG1310|consensus 98.5 5E-07 1.1E-11 79.4 8.3 112 126-237 368-482 (758)
169 KOG0495|consensus 98.4 3.3E-06 7.1E-11 76.2 12.3 124 132-255 651-774 (913)
170 PRK14720 transcript cleavage f 98.4 4.7E-06 1E-10 79.3 14.0 115 131-246 115-269 (906)
171 PF13525 YfiO: Outer membrane 98.4 1.9E-05 4.2E-10 63.3 15.7 119 133-251 43-195 (203)
172 PRK10866 outer membrane biogen 98.4 1.7E-05 3.6E-10 65.4 15.6 122 134-255 71-233 (243)
173 PF00515 TPR_1: Tetratricopept 98.4 4.4E-07 9.6E-12 50.5 4.4 33 201-233 2-34 (34)
174 PF13431 TPR_17: Tetratricopep 98.4 2.7E-07 5.9E-12 51.3 3.1 32 189-220 2-33 (34)
175 KOG1127|consensus 98.4 8.9E-07 1.9E-11 82.9 8.2 114 133-246 563-676 (1238)
176 KOG4555|consensus 98.4 4.9E-06 1.1E-10 60.3 9.8 83 171-253 48-134 (175)
177 PF13431 TPR_17: Tetratricopep 98.4 4.2E-07 9.2E-12 50.5 3.2 34 154-187 1-34 (34)
178 COG4105 ComL DNA uptake lipopr 98.4 3.6E-05 7.9E-10 62.5 15.4 79 132-210 34-118 (254)
179 PF07719 TPR_2: Tetratricopept 98.3 1.4E-06 3.1E-11 48.3 5.1 34 200-233 1-34 (34)
180 PF13428 TPR_14: Tetratricopep 98.3 1.6E-06 3.4E-11 51.4 5.3 42 167-208 2-43 (44)
181 PF04733 Coatomer_E: Coatomer 98.3 8.1E-06 1.7E-10 69.0 10.7 103 138-240 171-276 (290)
182 KOG4642|consensus 98.3 1.3E-06 2.8E-11 69.7 5.4 85 171-255 15-99 (284)
183 KOG4234|consensus 98.3 7.7E-06 1.7E-10 63.7 9.3 73 131-203 133-205 (271)
184 PF00515 TPR_1: Tetratricopept 98.3 1.6E-06 3.4E-11 48.2 4.1 32 167-198 2-33 (34)
185 KOG0546|consensus 98.2 1.4E-06 3.1E-11 73.2 4.9 124 129-252 219-361 (372)
186 KOG2376|consensus 98.2 1.1E-05 2.5E-10 71.9 10.7 121 134-258 14-136 (652)
187 COG1729 Uncharacterized protei 98.2 1.3E-05 2.8E-10 65.6 10.2 87 169-255 144-236 (262)
188 KOG1130|consensus 98.2 9.8E-07 2.1E-11 75.6 3.4 129 127-255 190-336 (639)
189 KOG3785|consensus 98.2 3.6E-05 7.8E-10 65.0 12.4 113 139-251 64-202 (557)
190 PF03704 BTAD: Bacterial trans 98.2 0.00012 2.6E-09 55.3 14.5 95 134-228 8-124 (146)
191 PF12569 NARP1: NMDA receptor- 98.2 3.6E-05 7.7E-10 69.9 13.4 123 133-255 195-326 (517)
192 COG4785 NlpI Lipoprotein NlpI, 98.2 3.8E-06 8.1E-11 66.3 5.9 99 166-264 65-166 (297)
193 KOG2376|consensus 98.1 8.6E-05 1.9E-09 66.5 13.9 125 136-263 83-256 (652)
194 PF12968 DUF3856: Domain of Un 98.1 0.00025 5.4E-09 50.6 13.4 100 130-229 7-129 (144)
195 PF14938 SNAP: Soluble NSF att 98.1 2.2E-05 4.7E-10 66.3 9.8 103 131-233 113-229 (282)
196 PF13512 TPR_18: Tetratricopep 98.1 7.4E-05 1.6E-09 55.5 11.1 85 165-249 9-99 (142)
197 KOG4340|consensus 98.1 2.9E-05 6.2E-10 64.2 9.5 122 134-255 46-199 (459)
198 COG3118 Thioredoxin domain-con 98.1 0.00026 5.7E-09 58.6 15.1 119 134-252 136-290 (304)
199 PF07719 TPR_2: Tetratricopept 98.1 9.8E-06 2.1E-10 44.8 4.8 33 167-199 2-34 (34)
200 PF14938 SNAP: Soluble NSF att 98.1 3.3E-05 7.2E-10 65.2 9.8 125 130-255 73-217 (282)
201 PF14853 Fis1_TPR_C: Fis1 C-te 98.0 3.9E-05 8.5E-10 47.0 7.0 47 201-247 2-48 (53)
202 COG3071 HemY Uncharacterized e 98.0 0.00061 1.3E-08 58.4 15.9 129 127-255 79-208 (400)
203 COG0457 NrfG FOG: TPR repeat [ 98.0 0.0003 6.5E-09 55.4 13.8 120 134-253 97-221 (291)
204 PF13181 TPR_8: Tetratricopept 97.9 1.8E-05 4E-10 43.7 4.2 33 201-233 2-34 (34)
205 PF06552 TOM20_plant: Plant sp 97.9 6.5E-05 1.4E-09 57.8 7.4 69 182-250 7-85 (186)
206 KOG1130|consensus 97.9 3.5E-05 7.6E-10 66.3 6.4 118 132-249 17-150 (639)
207 COG0457 NrfG FOG: TPR repeat [ 97.8 0.00068 1.5E-08 53.4 13.2 113 141-253 139-255 (291)
208 KOG2796|consensus 97.8 0.00036 7.8E-09 56.9 10.9 121 135-255 180-307 (366)
209 KOG0551|consensus 97.8 9.7E-05 2.1E-09 61.9 7.8 88 167-254 82-173 (390)
210 PRK10941 hypothetical protein; 97.8 0.00035 7.5E-09 58.2 11.1 78 168-245 183-260 (269)
211 KOG4507|consensus 97.8 0.00018 3.8E-09 64.6 9.6 109 138-246 613-722 (886)
212 PLN03218 maturation of RBCL 1; 97.8 0.0012 2.6E-08 65.3 15.7 114 139-253 586-703 (1060)
213 KOG3824|consensus 97.7 0.00018 3.8E-09 59.9 8.3 82 129-210 113-194 (472)
214 KOG2053|consensus 97.7 0.00057 1.2E-08 64.0 11.9 111 139-250 16-126 (932)
215 KOG4340|consensus 97.7 9.7E-05 2.1E-09 61.2 6.2 94 131-224 143-265 (459)
216 PLN03081 pentatricopeptide (PP 97.7 0.00047 1E-08 65.7 11.8 114 140-255 434-549 (697)
217 KOG3785|consensus 97.7 0.00049 1.1E-08 58.4 10.3 105 141-249 31-136 (557)
218 COG4700 Uncharacterized protei 97.7 0.002 4.4E-08 50.0 12.7 114 141-255 65-181 (251)
219 PLN03218 maturation of RBCL 1; 97.7 0.0022 4.8E-08 63.4 15.9 120 135-255 510-635 (1060)
220 COG2976 Uncharacterized protei 97.6 0.0027 5.9E-08 49.6 12.9 101 132-233 89-192 (207)
221 PF13181 TPR_8: Tetratricopept 97.6 0.00012 2.5E-09 40.4 4.0 32 167-198 2-33 (34)
222 KOG3364|consensus 97.6 0.0024 5.2E-08 46.8 11.5 82 166-247 32-118 (149)
223 PLN03081 pentatricopeptide (PP 97.6 0.0014 3.1E-08 62.4 13.4 116 137-255 264-381 (697)
224 KOG2471|consensus 97.6 0.00025 5.3E-09 62.4 7.1 113 132-244 240-379 (696)
225 KOG2796|consensus 97.6 0.00059 1.3E-08 55.7 8.7 100 134-233 214-319 (366)
226 PF05843 Suf: Suppressor of fo 97.6 0.0018 3.9E-08 54.6 12.1 113 137-249 6-122 (280)
227 KOG0376|consensus 97.5 3.9E-05 8.4E-10 67.2 2.0 87 169-255 7-93 (476)
228 PF04781 DUF627: Protein of un 97.5 0.0015 3.3E-08 46.2 9.6 92 138-229 2-107 (111)
229 KOG3081|consensus 97.5 0.0053 1.1E-07 50.3 13.8 87 169-255 172-262 (299)
230 PLN03077 Protein ECB2; Provisi 97.5 0.0016 3.4E-08 63.7 13.0 112 142-255 599-712 (857)
231 KOG0545|consensus 97.5 0.00052 1.1E-08 55.4 7.6 90 166-255 178-285 (329)
232 COG3071 HemY Uncharacterized e 97.5 0.0041 8.8E-08 53.5 13.2 118 134-255 265-382 (400)
233 PF10300 DUF3808: Protein of u 97.5 0.0014 3.1E-08 59.3 11.1 100 130-229 265-376 (468)
234 PF13174 TPR_6: Tetratricopept 97.5 0.00027 5.8E-09 38.5 4.1 31 202-232 2-32 (33)
235 KOG4151|consensus 97.5 0.00081 1.7E-08 62.4 9.3 117 129-245 50-172 (748)
236 PF14853 Fis1_TPR_C: Fis1 C-te 97.4 0.00076 1.6E-08 41.3 6.3 43 167-209 2-44 (53)
237 KOG3204|consensus 97.4 0.00013 2.8E-09 56.1 3.1 52 16-79 6-57 (197)
238 PRK04841 transcriptional regul 97.4 0.0051 1.1E-07 60.4 14.6 121 135-255 455-594 (903)
239 PF04184 ST7: ST7 protein; In 97.3 0.0023 5E-08 56.8 10.3 59 168-226 261-321 (539)
240 PF13176 TPR_7: Tetratricopept 97.3 0.00048 1E-08 38.6 4.1 27 202-228 1-27 (36)
241 KOG2610|consensus 97.3 0.0056 1.2E-07 51.8 11.9 122 134-255 105-230 (491)
242 KOG3824|consensus 97.3 0.001 2.2E-08 55.4 7.6 73 171-243 121-193 (472)
243 smart00028 TPR Tetratricopepti 97.3 0.0004 8.7E-09 36.8 3.7 31 202-232 3-33 (34)
244 PRK04841 transcriptional regul 97.3 0.0048 1E-07 60.6 13.6 122 134-255 493-633 (903)
245 PF15015 NYD-SP12_N: Spermatog 97.3 0.0021 4.6E-08 55.7 9.4 92 135-226 179-288 (569)
246 PF14561 TPR_20: Tetratricopep 97.3 0.0024 5.2E-08 44.0 8.0 66 185-250 7-74 (90)
247 KOG4814|consensus 97.3 0.0039 8.5E-08 56.8 11.1 96 134-229 356-457 (872)
248 COG4976 Predicted methyltransf 97.2 0.00069 1.5E-08 54.1 5.5 65 176-240 5-69 (287)
249 PLN03077 Protein ECB2; Provisi 97.2 0.0039 8.4E-08 60.9 11.8 111 140-255 532-646 (857)
250 PF13174 TPR_6: Tetratricopept 97.2 0.00068 1.5E-08 36.8 3.9 32 168-199 2-33 (33)
251 COG4105 ComL DNA uptake lipopr 97.2 0.0036 7.8E-08 51.1 9.5 79 165-243 33-117 (254)
252 KOG1308|consensus 97.2 5.9E-05 1.3E-09 63.4 -0.7 79 177-255 125-203 (377)
253 KOG3081|consensus 97.2 0.017 3.8E-07 47.3 13.3 94 145-238 186-280 (299)
254 PRK10941 hypothetical protein; 97.2 0.007 1.5E-07 50.5 11.5 77 134-210 183-259 (269)
255 KOG2396|consensus 97.2 0.0057 1.2E-07 54.2 11.1 95 149-243 88-183 (568)
256 KOG1915|consensus 97.1 0.011 2.3E-07 52.3 12.1 103 133-235 74-176 (677)
257 smart00028 TPR Tetratricopepti 97.1 0.0011 2.5E-08 35.0 4.0 32 167-198 2-33 (34)
258 PF10300 DUF3808: Protein of u 97.1 0.0079 1.7E-07 54.5 11.6 107 144-250 245-356 (468)
259 PF03704 BTAD: Bacterial trans 97.1 0.0063 1.4E-07 45.8 9.4 61 133-193 63-123 (146)
260 PF04184 ST7: ST7 protein; In 97.1 0.013 2.9E-07 52.1 12.2 107 136-242 263-388 (539)
261 KOG1941|consensus 97.0 0.0025 5.5E-08 54.3 7.3 119 135-253 125-265 (518)
262 PF13176 TPR_7: Tetratricopept 97.0 0.0015 3.3E-08 36.5 3.9 25 169-193 2-26 (36)
263 PF05843 Suf: Suppressor of fo 96.9 0.031 6.7E-07 47.2 13.2 107 134-240 37-147 (280)
264 PF09613 HrpB1_HrpK: Bacterial 96.9 0.12 2.6E-06 39.4 15.9 112 134-247 12-123 (160)
265 KOG1915|consensus 96.9 0.017 3.6E-07 51.2 11.2 110 143-253 377-490 (677)
266 PF09986 DUF2225: Uncharacteri 96.9 0.022 4.8E-07 45.9 11.2 93 141-233 86-198 (214)
267 KOG1941|consensus 96.8 0.0066 1.4E-07 51.9 8.2 97 134-230 164-276 (518)
268 PF09613 HrpB1_HrpK: Bacterial 96.8 0.037 7.9E-07 42.1 11.2 84 167-250 11-94 (160)
269 KOG1586|consensus 96.8 0.034 7.5E-07 44.8 11.4 106 132-238 74-192 (288)
270 KOG1585|consensus 96.8 0.046 9.9E-07 44.4 12.1 123 132-254 31-170 (308)
271 KOG2471|consensus 96.7 0.0021 4.6E-08 56.7 4.6 81 132-212 283-381 (696)
272 PF14561 TPR_20: Tetratricopep 96.7 0.032 6.9E-07 38.4 9.2 49 151-199 7-55 (90)
273 PF02259 FAT: FAT domain; Int 96.6 0.1 2.3E-06 45.0 14.7 118 130-247 144-305 (352)
274 COG4976 Predicted methyltransf 96.5 0.0049 1.1E-07 49.4 4.9 60 141-200 4-63 (287)
275 COG5191 Uncharacterized conser 96.5 0.0054 1.2E-07 51.3 5.2 89 154-242 95-184 (435)
276 PF13281 DUF4071: Domain of un 96.5 0.18 3.8E-06 44.1 14.6 110 135-244 182-349 (374)
277 PRK15180 Vi polysaccharide bio 96.4 0.076 1.6E-06 47.3 11.9 100 139-238 296-395 (831)
278 PF04910 Tcf25: Transcriptiona 96.3 0.11 2.5E-06 45.4 12.6 87 158-244 32-148 (360)
279 KOG1070|consensus 96.3 0.09 2E-06 52.3 12.6 111 139-249 1537-1649(1710)
280 KOG2053|consensus 96.3 0.11 2.3E-06 49.5 12.7 107 137-244 48-154 (932)
281 PF10602 RPN7: 26S proteasome 96.2 0.16 3.4E-06 39.7 11.6 96 132-227 36-140 (177)
282 COG2912 Uncharacterized conser 96.1 0.057 1.2E-06 44.6 9.3 77 168-244 183-259 (269)
283 KOG1586|consensus 96.1 0.12 2.7E-06 41.8 10.6 113 135-247 116-244 (288)
284 COG3914 Spy Predicted O-linked 96.1 0.19 4.1E-06 45.8 12.9 107 138-244 73-186 (620)
285 KOG0530|consensus 96.1 0.13 2.9E-06 42.3 10.9 113 143-255 54-168 (318)
286 PF10579 Rapsyn_N: Rapsyn N-te 96.1 0.099 2.1E-06 34.6 8.3 63 131-193 5-70 (80)
287 KOG2610|consensus 95.9 0.098 2.1E-06 44.5 10.0 91 135-225 140-234 (491)
288 COG3898 Uncharacterized membra 95.9 0.51 1.1E-05 41.2 14.1 88 137-225 125-213 (531)
289 PF08424 NRDE-2: NRDE-2, neces 95.9 0.23 5.1E-06 42.7 12.5 88 154-241 7-106 (321)
290 KOG1310|consensus 95.9 0.023 4.9E-07 51.0 6.1 85 178-262 386-475 (758)
291 COG3118 Thioredoxin domain-con 95.8 0.1 2.2E-06 43.7 9.5 89 167-255 135-257 (304)
292 PF13374 TPR_10: Tetratricopep 95.7 0.027 5.9E-07 32.0 4.3 27 168-194 4-30 (42)
293 TIGR02561 HrpB1_HrpK type III 95.7 0.25 5.3E-06 37.1 10.1 108 134-243 12-119 (153)
294 PF12862 Apc5: Anaphase-promot 95.6 0.061 1.3E-06 37.2 6.6 54 142-195 8-70 (94)
295 PF13374 TPR_10: Tetratricopep 95.6 0.036 7.9E-07 31.5 4.6 29 201-229 3-31 (42)
296 PRK13184 pknD serine/threonine 95.6 0.11 2.3E-06 50.9 10.1 111 137-248 480-600 (932)
297 PF12862 Apc5: Anaphase-promot 95.5 0.087 1.9E-06 36.5 7.0 57 175-231 7-72 (94)
298 KOG4507|consensus 95.5 0.082 1.8E-06 48.2 8.3 78 134-211 644-721 (886)
299 KOG0529|consensus 95.4 0.28 6E-06 42.9 10.9 101 147-247 90-196 (421)
300 PF02259 FAT: FAT domain; Int 95.3 0.42 9E-06 41.3 12.4 101 132-232 184-341 (352)
301 COG2912 Uncharacterized conser 95.3 0.17 3.8E-06 41.8 9.2 74 137-210 186-259 (269)
302 KOG0529|consensus 95.3 1.2 2.7E-05 39.0 14.5 117 134-250 30-161 (421)
303 PF10516 SHNi-TPR: SHNi-TPR; 95.3 0.036 7.7E-07 31.3 3.5 29 201-229 2-30 (38)
304 KOG3364|consensus 95.2 0.35 7.5E-06 35.7 9.2 77 133-209 33-114 (149)
305 COG0790 FOG: TPR repeat, SEL1 95.2 1.4 3E-05 37.1 14.8 112 132-248 109-236 (292)
306 TIGR02561 HrpB1_HrpK type III 95.1 0.5 1.1E-05 35.5 10.2 74 177-250 21-94 (153)
307 PF07079 DUF1347: Protein of u 95.0 1.2 2.7E-05 39.6 13.8 97 128-225 375-520 (549)
308 KOG1070|consensus 95.0 0.47 1E-05 47.6 12.3 106 131-236 1563-1670(1710)
309 PF07720 TPR_3: Tetratricopept 94.9 0.12 2.5E-06 28.9 5.0 33 201-233 2-36 (36)
310 PF10373 EST1_DNA_bind: Est1 D 94.8 0.15 3.3E-06 42.5 7.9 62 151-212 1-62 (278)
311 PF07079 DUF1347: Protein of u 94.8 0.29 6.4E-06 43.3 9.5 58 133-191 463-520 (549)
312 COG3914 Spy Predicted O-linked 94.6 0.48 1E-05 43.3 10.6 107 149-255 48-163 (620)
313 KOG1550|consensus 94.6 1.1 2.4E-05 41.7 13.4 110 133-246 245-372 (552)
314 PF10373 EST1_DNA_bind: Est1 D 94.5 0.18 3.9E-06 42.1 7.5 62 185-246 1-62 (278)
315 KOG1585|consensus 94.4 1.2 2.7E-05 36.4 11.5 92 138-229 116-219 (308)
316 KOG0530|consensus 94.3 0.39 8.5E-06 39.6 8.6 112 135-246 115-233 (318)
317 KOG4814|consensus 94.3 0.26 5.5E-06 45.5 8.3 89 167-255 355-449 (872)
318 KOG1550|consensus 94.2 1.8 3.9E-05 40.3 13.9 106 135-246 291-408 (552)
319 PF09986 DUF2225: Uncharacteri 94.2 0.35 7.6E-06 39.0 8.2 78 130-207 116-207 (214)
320 COG3629 DnrI DNA-binding trans 94.1 1.3 2.9E-05 37.1 11.7 65 164-228 151-215 (280)
321 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.11 2.5E-06 29.3 3.6 30 167-196 2-31 (38)
322 PF08631 SPO22: Meiosis protei 93.8 2.4 5.1E-05 35.7 13.0 99 132-230 35-151 (278)
323 KOG2047|consensus 93.7 2.6 5.7E-05 39.3 13.4 125 131-255 476-607 (835)
324 COG2976 Uncharacterized protei 93.7 2.9 6.2E-05 33.1 13.9 87 167-255 90-180 (207)
325 PF07721 TPR_4: Tetratricopept 93.7 0.1 2.2E-06 26.6 2.8 23 202-224 3-25 (26)
326 PF13281 DUF4071: Domain of un 93.6 2.1 4.6E-05 37.5 12.4 83 165-247 140-230 (374)
327 KOG3617|consensus 93.3 1.4 3.1E-05 42.2 11.3 90 166-255 858-988 (1416)
328 PF14863 Alkyl_sulf_dimr: Alky 93.2 0.29 6.3E-06 36.6 5.7 58 198-255 68-125 (141)
329 TIGR03504 FimV_Cterm FimV C-te 93.2 0.55 1.2E-05 27.4 5.7 25 204-228 3-27 (44)
330 KOG2300|consensus 93.1 4.8 0.0001 36.3 13.7 121 131-255 366-506 (629)
331 PF04910 Tcf25: Transcriptiona 92.9 1.8 4E-05 37.9 11.2 100 134-233 105-226 (360)
332 KOG2422|consensus 92.9 1.9 4.1E-05 39.5 11.2 100 145-244 251-387 (665)
333 PF08424 NRDE-2: NRDE-2, neces 92.8 2.7 5.8E-05 36.2 11.9 83 148-230 47-132 (321)
334 PF07720 TPR_3: Tetratricopept 92.5 0.52 1.1E-05 26.2 4.7 19 136-154 5-23 (36)
335 PF14863 Alkyl_sulf_dimr: Alky 92.4 0.51 1.1E-05 35.3 6.1 53 131-183 69-121 (141)
336 PF07721 TPR_4: Tetratricopept 92.4 0.22 4.8E-06 25.3 2.9 24 167-190 2-25 (26)
337 COG4649 Uncharacterized protei 92.3 4.4 9.6E-05 31.5 12.9 111 134-245 96-211 (221)
338 cd02682 MIT_AAA_Arch MIT: doma 92.2 1.3 2.8E-05 29.2 7.0 31 131-161 5-35 (75)
339 KOG2047|consensus 92.0 4.2 9.2E-05 38.0 12.3 21 139-159 394-414 (835)
340 COG0790 FOG: TPR repeat, SEL1 91.6 7.3 0.00016 32.7 13.3 100 135-239 151-276 (292)
341 COG3629 DnrI DNA-binding trans 91.6 1.6 3.4E-05 36.7 8.6 64 132-195 153-216 (280)
342 KOG3617|consensus 91.5 2 4.4E-05 41.2 9.9 95 134-228 860-995 (1416)
343 COG3898 Uncharacterized membra 91.4 8.1 0.00017 34.1 12.8 126 129-255 81-209 (531)
344 PF10255 Paf67: RNA polymerase 91.4 1.2 2.6E-05 39.4 8.1 107 135-242 125-243 (404)
345 COG3947 Response regulator con 91.3 0.63 1.4E-05 39.0 5.9 55 201-255 280-334 (361)
346 COG4941 Predicted RNA polymera 91.0 2.1 4.6E-05 36.7 8.8 97 147-244 311-409 (415)
347 PF08631 SPO22: Meiosis protei 90.8 8.9 0.00019 32.2 15.6 17 179-195 134-150 (278)
348 PF04781 DUF627: Protein of un 90.7 2.2 4.7E-05 30.4 7.4 73 172-244 2-88 (111)
349 KOG2396|consensus 90.7 2.8 6E-05 37.9 9.6 71 135-205 108-179 (568)
350 PF09670 Cas_Cas02710: CRISPR- 90.6 8.5 0.00018 34.0 12.8 62 133-194 132-197 (379)
351 COG3947 Response regulator con 90.5 1.3 2.9E-05 37.1 7.0 59 168-226 281-339 (361)
352 PF04212 MIT: MIT (microtubule 90.3 1.1 2.3E-05 28.9 5.3 32 130-161 3-34 (69)
353 PF11817 Foie-gras_1: Foie gra 90.3 2.4 5.1E-05 35.0 8.6 53 137-189 183-241 (247)
354 PF10579 Rapsyn_N: Rapsyn N-te 90.0 3.4 7.4E-05 27.5 7.4 59 169-227 9-70 (80)
355 PF10255 Paf67: RNA polymerase 89.6 0.65 1.4E-05 41.1 5.0 61 168-228 124-192 (404)
356 KOG0686|consensus 89.6 3.5 7.6E-05 36.3 9.1 109 134-242 152-279 (466)
357 KOG2300|consensus 89.5 12 0.00025 34.0 12.4 91 132-222 46-149 (629)
358 KOG1258|consensus 89.1 19 0.00041 33.4 14.2 119 135-253 300-419 (577)
359 PF06957 COPI_C: Coatomer (COP 88.8 11 0.00025 33.6 12.0 126 128-253 200-353 (422)
360 KOG0546|consensus 88.7 0.39 8.5E-06 41.2 2.9 81 135-215 278-358 (372)
361 smart00386 HAT HAT (Half-A-TPR 88.7 1.4 3.1E-05 22.9 4.3 30 214-243 1-30 (33)
362 COG4455 ImpE Protein of avirul 88.7 3.3 7.2E-05 33.4 7.8 60 140-199 9-68 (273)
363 PF13226 DUF4034: Domain of un 88.6 13 0.00028 31.3 11.6 112 139-250 7-149 (277)
364 PF10602 RPN7: 26S proteasome 88.0 3.5 7.6E-05 32.2 7.7 89 167-255 37-134 (177)
365 cd02681 MIT_calpain7_1 MIT: do 87.8 1.7 3.6E-05 28.8 4.9 31 131-161 5-35 (76)
366 PF15015 NYD-SP12_N: Spermatog 87.8 1.8 3.9E-05 38.2 6.3 77 179-255 196-283 (569)
367 COG5191 Uncharacterized conser 87.3 1.4 2.9E-05 37.5 5.1 72 134-205 109-181 (435)
368 cd02683 MIT_1 MIT: domain cont 87.3 1.7 3.6E-05 28.9 4.7 31 131-161 5-35 (77)
369 smart00386 HAT HAT (Half-A-TPR 87.1 2.1 4.5E-05 22.2 4.3 28 146-173 1-28 (33)
370 PF10345 Cohesin_load: Cohesin 86.8 29 0.00062 32.8 15.8 114 130-244 57-185 (608)
371 KOG0985|consensus 86.4 7.1 0.00015 38.6 9.8 105 135-247 1197-1326(1666)
372 PF11207 DUF2989: Protein of u 86.4 4.7 0.0001 32.0 7.5 55 198-253 139-197 (203)
373 KOG1914|consensus 86.2 5.6 0.00012 36.4 8.6 47 147-193 34-80 (656)
374 KOG2581|consensus 86.2 14 0.00031 32.6 10.8 68 167-234 210-281 (493)
375 PF07219 HemY_N: HemY protein 86.1 6.5 0.00014 27.9 7.6 54 128-181 55-108 (108)
376 PF10345 Cohesin_load: Cohesin 85.8 21 0.00045 33.8 12.9 92 133-224 302-428 (608)
377 cd02678 MIT_VPS4 MIT: domain c 85.7 2.7 5.8E-05 27.6 5.0 32 130-161 4-35 (75)
378 KOG1839|consensus 84.5 3.1 6.8E-05 41.7 6.8 126 130-255 930-1078(1236)
379 TIGR03504 FimV_Cterm FimV C-te 84.5 2.2 4.7E-05 24.9 3.7 26 169-194 2-27 (44)
380 cd02680 MIT_calpain7_2 MIT: do 84.4 2.6 5.6E-05 27.8 4.4 31 131-161 5-35 (75)
381 smart00745 MIT Microtubule Int 83.9 3.6 7.9E-05 27.0 5.1 32 130-161 6-37 (77)
382 TIGR02710 CRISPR-associated pr 83.9 25 0.00055 31.0 11.5 56 135-190 133-195 (380)
383 PF10952 DUF2753: Protein of u 83.8 14 0.00031 26.9 9.4 96 135-236 4-119 (140)
384 cd02684 MIT_2 MIT: domain cont 83.7 2.7 5.9E-05 27.7 4.3 32 130-161 4-35 (75)
385 PF11207 DUF2989: Protein of u 83.7 4.5 9.8E-05 32.1 6.2 70 149-220 123-198 (203)
386 PHA02537 M terminase endonucle 83.6 3.1 6.7E-05 33.9 5.5 107 141-248 92-225 (230)
387 PF12968 DUF3856: Domain of Un 82.4 8.5 0.00018 28.0 6.6 60 135-194 58-128 (144)
388 cd02656 MIT MIT: domain contai 82.1 4.7 0.0001 26.3 5.1 31 131-161 5-35 (75)
389 KOG2041|consensus 82.1 7.8 0.00017 36.7 7.9 80 134-225 798-877 (1189)
390 PF12854 PPR_1: PPR repeat 81.8 4.9 0.00011 21.7 4.3 26 199-224 6-31 (34)
391 PRK13184 pknD serine/threonine 81.5 15 0.00032 36.5 10.1 92 146-238 533-629 (932)
392 cd02677 MIT_SNX15 MIT: domain 81.4 4.2 9.1E-05 26.8 4.5 32 130-161 4-35 (75)
393 PRK15180 Vi polysaccharide bio 80.8 4.6 9.9E-05 36.5 5.8 98 138-235 329-426 (831)
394 PF01239 PPTA: Protein prenylt 80.6 6.5 0.00014 20.6 4.8 28 220-247 3-30 (31)
395 KOG1839|consensus 80.3 7.6 0.00016 39.2 7.6 101 130-230 971-1087(1236)
396 PF04053 Coatomer_WDAD: Coatom 79.3 21 0.00046 32.3 9.8 55 164-226 319-373 (443)
397 KOG0890|consensus 78.9 37 0.00081 36.8 12.2 110 131-242 1669-1797(2382)
398 COG4455 ImpE Protein of avirul 78.7 11 0.00023 30.6 6.7 58 176-233 11-68 (273)
399 KOG3783|consensus 78.6 24 0.00052 32.4 9.7 68 166-233 449-524 (546)
400 PF11846 DUF3366: Domain of un 78.2 16 0.00034 28.8 7.8 51 182-233 127-177 (193)
401 PF04053 Coatomer_WDAD: Coatom 77.9 28 0.00061 31.5 10.1 52 137-193 323-374 (443)
402 PF11817 Foie-gras_1: Foie gra 77.1 29 0.00064 28.5 9.4 60 167-226 179-244 (247)
403 PF15469 Sec5: Exocyst complex 76.8 33 0.00072 26.7 9.6 85 141-240 95-179 (182)
404 KOG0292|consensus 76.7 81 0.0018 31.1 13.4 124 132-255 991-1139(1202)
405 KOG1463|consensus 76.4 14 0.00029 32.0 7.1 110 132-244 209-328 (411)
406 KOG3807|consensus 76.3 35 0.00077 29.6 9.5 89 141-231 193-306 (556)
407 KOG1464|consensus 75.7 9.9 0.00021 31.9 6.0 52 143-194 38-93 (440)
408 KOG4459|consensus 75.6 22 0.00047 31.9 8.4 122 134-255 33-188 (471)
409 PF09205 DUF1955: Domain of un 75.0 32 0.0007 25.6 8.3 61 169-229 88-149 (161)
410 COG2015 Alkyl sulfatase and re 74.4 11 0.00025 34.0 6.4 67 119-185 439-505 (655)
411 cd02682 MIT_AAA_Arch MIT: doma 74.3 20 0.00044 23.6 6.1 37 172-208 12-55 (75)
412 KOG2422|consensus 74.3 76 0.0016 29.6 12.5 96 136-232 346-451 (665)
413 PF12854 PPR_1: PPR repeat 74.3 9 0.0002 20.6 3.9 27 165-191 6-32 (34)
414 cd02679 MIT_spastin MIT: domai 74.1 11 0.00024 25.1 4.9 32 130-161 6-37 (79)
415 COG2909 MalT ATP-dependent tra 73.6 96 0.0021 30.5 13.7 115 134-248 417-551 (894)
416 COG2909 MalT ATP-dependent tra 73.6 68 0.0015 31.5 11.6 83 133-215 459-552 (894)
417 COG5091 SGT1 Suppressor of G2 73.6 5 0.00011 33.3 3.8 93 140-232 3-111 (368)
418 cd02680 MIT_calpain7_2 MIT: do 73.3 8.5 0.00018 25.4 4.2 32 148-194 3-34 (75)
419 PRK15490 Vi polysaccharide bio 72.4 70 0.0015 30.0 11.2 86 143-233 19-104 (578)
420 KOG1914|consensus 71.5 75 0.0016 29.5 10.8 24 1-24 202-225 (656)
421 PF11846 DUF3366: Domain of un 69.4 19 0.00041 28.3 6.3 48 149-197 128-175 (193)
422 KOG3783|consensus 69.3 33 0.00072 31.5 8.2 79 132-210 267-348 (546)
423 KOG2561|consensus 68.2 87 0.0019 28.3 10.3 106 123-228 154-295 (568)
424 PF08238 Sel1: Sel1 repeat; I 66.7 17 0.00037 19.6 4.1 15 215-229 23-37 (39)
425 KOG0276|consensus 65.7 76 0.0017 29.9 9.8 29 132-160 666-694 (794)
426 KOG4563|consensus 65.7 24 0.00053 30.7 6.4 60 129-188 38-105 (400)
427 PF02064 MAS20: MAS20 protein 64.6 18 0.0004 26.2 4.8 34 134-167 65-98 (121)
428 COG2015 Alkyl sulfatase and re 64.6 22 0.00047 32.4 6.0 54 202-255 454-507 (655)
429 COG4649 Uncharacterized protei 63.5 71 0.0015 25.1 12.2 120 136-255 62-188 (221)
430 PF07163 Pex26: Pex26 protein; 63.2 24 0.00052 29.7 5.7 117 138-255 41-179 (309)
431 PF09797 NatB_MDM20: N-acetylt 63.0 80 0.0017 27.6 9.5 46 180-225 197-242 (365)
432 smart00671 SEL1 Sel1-like repe 62.9 20 0.00044 18.9 3.9 27 202-228 3-33 (36)
433 KOG0739|consensus 62.5 51 0.0011 28.3 7.5 32 129-160 7-38 (439)
434 COG2967 ApaG Uncharacterized p 62.3 4.5 9.8E-05 29.0 1.3 18 9-26 43-60 (126)
435 PF01535 PPR: PPR repeat; Int 62.1 16 0.00035 18.4 3.3 18 174-191 8-25 (31)
436 PF04212 MIT: MIT (microtubule 60.9 27 0.00058 22.2 4.7 20 208-227 13-32 (69)
437 COG5536 BET4 Protein prenyltra 60.0 34 0.00074 28.8 6.1 106 141-246 119-239 (328)
438 PF04190 DUF410: Protein of un 60.0 1E+02 0.0022 25.7 12.0 93 132-224 10-114 (260)
439 PF02064 MAS20: MAS20 protein 59.9 30 0.00065 25.1 5.2 34 206-239 69-102 (121)
440 PF09670 Cas_Cas02710: CRISPR- 59.7 1.3E+02 0.0027 26.7 10.3 80 168-247 133-219 (379)
441 cd02677 MIT_SNX15 MIT: domain 59.6 15 0.00033 24.1 3.3 14 180-193 20-33 (75)
442 PF09205 DUF1955: Domain of un 59.1 73 0.0016 23.8 7.5 53 143-195 97-149 (161)
443 KOG0276|consensus 58.8 73 0.0016 30.0 8.4 69 176-249 647-723 (794)
444 PF08969 USP8_dimer: USP8 dime 58.3 45 0.00098 23.7 6.0 35 127-161 33-67 (115)
445 cd02681 MIT_calpain7_1 MIT: do 57.9 29 0.00064 22.9 4.5 16 212-227 18-33 (76)
446 PF04010 DUF357: Protein of un 57.8 44 0.00095 22.0 5.3 35 124-158 27-61 (75)
447 PF07219 HemY_N: HemY protein 56.9 57 0.0012 22.9 6.2 43 172-214 65-107 (108)
448 KOG1258|consensus 55.9 1.8E+02 0.0039 27.3 14.5 106 143-248 377-489 (577)
449 KOG1464|consensus 55.9 42 0.00092 28.3 6.0 29 133-161 66-94 (440)
450 PF13041 PPR_2: PPR repeat fam 55.9 39 0.00084 19.6 6.3 20 174-193 11-30 (50)
451 TIGR00756 PPR pentatricopeptid 55.5 28 0.0006 17.8 4.0 24 204-227 4-27 (35)
452 COG3014 Uncharacterized protei 55.2 1.5E+02 0.0032 26.0 10.6 60 135-194 61-153 (449)
453 cd02683 MIT_1 MIT: domain cont 54.9 32 0.0007 22.7 4.3 20 216-235 29-48 (77)
454 KOG0985|consensus 53.7 2.3E+02 0.0049 28.9 11.1 55 132-191 1104-1158(1666)
455 KOG4563|consensus 53.4 27 0.00059 30.4 4.7 55 169-223 44-106 (400)
456 PRK15490 Vi polysaccharide bio 53.3 65 0.0014 30.2 7.4 76 174-251 16-91 (578)
457 PF00244 14-3-3: 14-3-3 protei 53.2 71 0.0015 26.2 7.0 45 149-193 143-196 (236)
458 PRK11619 lytic murein transgly 52.6 2.1E+02 0.0045 27.5 10.8 54 175-228 321-374 (644)
459 COG5107 RNA14 Pre-mRNA 3'-end 52.6 54 0.0012 29.7 6.4 72 154-228 290-361 (660)
460 COG5536 BET4 Protein prenyltra 52.6 55 0.0012 27.6 6.1 100 148-247 90-197 (328)
461 KOG2041|consensus 51.9 76 0.0017 30.5 7.5 12 145-156 747-758 (1189)
462 PF02255 PTS_IIA: PTS system, 51.0 73 0.0016 22.0 5.8 37 124-160 6-42 (96)
463 KOG2581|consensus 50.6 1.9E+02 0.0041 26.0 10.7 111 130-243 245-363 (493)
464 cd02679 MIT_spastin MIT: domai 50.2 38 0.00083 22.5 4.1 17 181-197 4-20 (79)
465 cd00215 PTS_IIA_lac PTS_IIA, P 50.0 70 0.0015 22.2 5.5 37 124-160 7-43 (97)
466 KOG2997|consensus 49.9 42 0.00092 28.8 5.2 42 129-170 16-57 (366)
467 KOG3616|consensus 49.8 1.2E+02 0.0025 29.6 8.4 93 134-226 663-791 (1636)
468 KOG2114|consensus 49.7 91 0.002 30.5 7.8 30 132-161 368-397 (933)
469 PF02184 HAT: HAT (Half-A-TPR) 49.6 41 0.0009 18.1 3.4 16 216-231 3-18 (32)
470 KOG4014|consensus 48.9 1.3E+02 0.0029 23.8 9.7 98 145-249 86-214 (248)
471 TIGR00823 EIIA-LAC phosphotran 47.4 73 0.0016 22.2 5.3 38 123-160 8-45 (99)
472 PRK09591 celC cellobiose phosp 47.0 61 0.0013 22.8 5.0 38 123-160 11-48 (104)
473 PF10952 DUF2753: Protein of u 46.8 1.1E+02 0.0025 22.4 6.7 64 169-232 4-86 (140)
474 PF12753 Nro1: Nuclear pore co 46.4 44 0.00096 29.6 4.9 31 149-181 335-365 (404)
475 PF04190 DUF410: Protein of un 46.1 1.7E+02 0.0038 24.3 9.7 118 132-249 90-243 (260)
476 PF07163 Pex26: Pex26 protein; 45.3 1.1E+02 0.0023 26.0 6.7 54 209-263 92-149 (309)
477 KOG0889|consensus 45.1 3.2E+02 0.0069 31.8 11.6 81 166-247 2812-2900(3550)
478 PF12739 TRAPPC-Trs85: ER-Golg 44.9 2.3E+02 0.005 25.4 12.5 96 134-229 210-329 (414)
479 KOG4151|consensus 44.3 30 0.00066 33.1 3.9 73 139-211 100-172 (748)
480 smart00299 CLH Clathrin heavy 44.0 1.2E+02 0.0027 22.0 9.0 46 144-190 19-64 (140)
481 KOG4056|consensus 43.8 71 0.0015 23.7 4.9 35 134-168 83-117 (143)
482 COG4941 Predicted RNA polymera 43.1 2.1E+02 0.0045 25.1 8.2 73 137-209 334-408 (415)
483 PF13812 PPR_3: Pentatricopept 42.9 48 0.001 16.9 4.3 23 204-226 5-27 (34)
484 smart00745 MIT Microtubule Int 42.7 69 0.0015 20.7 4.5 16 217-232 32-47 (77)
485 PF05053 Menin: Menin; InterP 42.6 2.9E+02 0.0064 25.9 12.2 84 146-244 274-368 (618)
486 PF13226 DUF4034: Domain of un 42.6 1.9E+02 0.004 24.5 7.9 99 151-249 62-188 (277)
487 KOG2114|consensus 42.0 1.2E+02 0.0025 29.8 7.3 106 138-250 340-447 (933)
488 TIGR00985 3a0801s04tom mitocho 41.8 88 0.0019 23.6 5.3 33 135-167 93-126 (148)
489 PF09797 NatB_MDM20: N-acetylt 41.5 74 0.0016 27.8 5.8 47 145-191 196-242 (365)
490 PF04379 DUF525: Protein of un 40.7 17 0.00036 24.9 1.3 14 13-26 31-44 (90)
491 cd00280 TRFH Telomeric Repeat 40.1 92 0.002 24.6 5.3 36 139-175 118-153 (200)
492 cd02678 MIT_VPS4 MIT: domain c 39.6 83 0.0018 20.4 4.5 16 218-233 31-46 (75)
493 PRK10454 PTS system N,N'-diace 38.6 1.1E+02 0.0025 22.0 5.3 38 123-160 22-59 (115)
494 KOG4056|consensus 38.0 95 0.0021 23.1 4.8 35 206-240 87-121 (143)
495 KOG1463|consensus 37.7 2.8E+02 0.0061 24.3 8.2 92 137-228 133-237 (411)
496 KOG3807|consensus 37.5 2.8E+02 0.0061 24.3 10.8 26 218-243 380-405 (556)
497 KOG4459|consensus 37.3 52 0.0011 29.6 4.0 87 135-227 136-222 (471)
498 KOG1811|consensus 37.2 1.7E+02 0.0036 27.8 7.3 44 198-241 585-629 (1141)
499 KOG0890|consensus 37.0 5.1E+02 0.011 29.0 11.4 66 165-232 1669-1734(2382)
500 PF10858 DUF2659: Protein of u 36.8 2E+02 0.0044 22.4 11.4 97 136-232 97-203 (220)
No 1
>KOG3203|consensus
Probab=99.98 E-value=2.9e-33 Score=201.37 Aligned_cols=102 Identities=48% Similarity=0.825 Sum_probs=97.7
Q ss_pred hhhccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCC
Q psy6284 6 RVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGG 85 (270)
Q Consensus 6 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g 85 (270)
+.+||+.|+|.|||+||+++++||||+.||.+|+|||||+|+|.+||||+|||.||.+|+++|.+|++++|+.|+||||+
T Consensus 12 ~g~~~~afaRvW~vvDa~~q~lGrLAs~ia~~L~GkhKPiYhP~~DcGD~VVV~N~~~Ia~sG~K~~qk~Y~~HsGyPG~ 91 (165)
T KOG3203|consen 12 RGNQWLAFARVWHVVDAKQQPLGRLASQIATTLQGKHKPIYHPSTDCGDHVVVTNCKKIAFSGKKWEQKIYRSHSGYPGG 91 (165)
T ss_pred cchHHHHHhhhheeeccccCchHHHHHHHHHHHhhccCCccCCccCCCCEEEEecchhheeccchhhhhhhhhcCCCCCc
Confidence 33999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhccCcchhhhhhh
Q psy6284 86 VSWTLAWQLHEIDPTLDKACEE 107 (270)
Q Consensus 86 ~~~~~~~~l~~~~p~~~~~~~~ 107 (270)
.+..+..++.+++|..++....
T Consensus 92 lk~~~~~q~~~rdp~~Iv~~AV 113 (165)
T KOG3203|consen 92 LKQTTADQLADRDPCRIVRLAV 113 (165)
T ss_pred hhhhHHHHHhhhCHHHHHHHHH
Confidence 9988889999999999987665
No 2
>CHL00159 rpl13 ribosomal protein L13; Validated
Probab=99.96 E-value=4.8e-30 Score=188.27 Aligned_cols=100 Identities=33% Similarity=0.430 Sum_probs=95.1
Q ss_pred hccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcc
Q psy6284 8 KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVS 87 (270)
Q Consensus 8 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~ 87 (270)
....++.+.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|+|+||+++.+||.++.++.|++||+||||.+
T Consensus 7 ~~~~~~~r~W~viDA~~~~lGRlAs~iA~~L~GKhKp~ytP~~d~Gd~VVViNa~kv~~TG~K~~~K~y~~htg~pGg~k 86 (143)
T CHL00159 7 PSKDYKNRKWYIIDAKDQTLGRLATKIASLLRGKNKPSYHPSVDTGDYVIVINAEKIKVTGNKTSQKFYVRHSGRPGGLK 86 (143)
T ss_pred CCchhcCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEecceeEEeCchhhheEEEecCCCCCCcc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCcchhhhhhh
Q psy6284 88 WTLAWQLHEIDPTLDKACEE 107 (270)
Q Consensus 88 ~~~~~~l~~~~p~~~~~~~~ 107 (270)
..++.+++.++|+.++....
T Consensus 87 ~~~~~~~~~r~P~~il~~aV 106 (143)
T CHL00159 87 IETFEELQNRLPNRIIEKAV 106 (143)
T ss_pred cccHHHHhhcCHHHHHHHHH
Confidence 99999999999999887655
No 3
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=99.96 E-value=7.8e-30 Score=187.93 Aligned_cols=100 Identities=29% Similarity=0.471 Sum_probs=94.7
Q ss_pred hccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcc
Q psy6284 8 KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVS 87 (270)
Q Consensus 8 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~ 87 (270)
....++++.||||||+|++|||+|+.||+.|+|||||+|+|++||||+|+|+||+++.++|.+|..+.|++|++||||..
T Consensus 6 ~~~~~~~~~W~viDA~~~~lGRlAs~IAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~htg~pGglk 85 (144)
T PRK09216 6 AKPAEVERKWYVIDAEGKVLGRLASEVASILRGKHKPTFTPHVDTGDFVIVINAEKVKLTGKKLTDKIYYRHSGYPGGLK 85 (144)
T ss_pred CChhhcCCCEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCCCCCCEEEEEeCceeEEcCchHhheeeEEecccCCCCE
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCcchhhhhhh
Q psy6284 88 WTLAWQLHEIDPTLDKACEE 107 (270)
Q Consensus 88 ~~~~~~l~~~~p~~~~~~~~ 107 (270)
..+..+++.+.|+.++....
T Consensus 86 ~~~~~~~~~r~P~~il~~aV 105 (144)
T PRK09216 86 EITFGELLAKKPERVIEKAV 105 (144)
T ss_pred EecHHHHhhhCHHHHHHHHH
Confidence 99999999999999887665
No 4
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type. This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.
Probab=99.96 E-value=1e-29 Score=186.64 Aligned_cols=100 Identities=31% Similarity=0.545 Sum_probs=95.1
Q ss_pred hccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcc
Q psy6284 8 KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVS 87 (270)
Q Consensus 8 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~ 87 (270)
+.+.++.+.||||||+|++|||+|+.||+.|+|||||+|||+.||||+|+|+||+++.+||.++..+.|++|++||+|..
T Consensus 4 ~~~~~~~r~W~viDA~~~~lGRLAs~iAk~L~GKhKp~y~p~~d~Gd~VvViNa~ki~~tG~k~~~k~y~~htg~pgg~k 83 (140)
T TIGR01066 4 KASDDKKRKWYVVDAAGKTLGRLASEVARLLRGKHKPTYTPHVDCGDYVIVINAEKVRLTGKKLEQKVYYRHSGYPGGLK 83 (140)
T ss_pred CChhhhcccEEEEeCCCCchHHHHHHHHHHHhccCCCccCCCccCCCEEEEEeccEEEEeCchhhceeeEEEcccCCccc
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCcchhhhhhh
Q psy6284 88 WTLAWQLHEIDPTLDKACEE 107 (270)
Q Consensus 88 ~~~~~~l~~~~p~~~~~~~~ 107 (270)
..+..+++.+.|+.++....
T Consensus 84 ~~~~~~~~~r~P~~ii~~aV 103 (140)
T TIGR01066 84 SRTFEEMIARKPERVLEHAV 103 (140)
T ss_pred cccHHHhhhcCHHHHHHHHH
Confidence 99999999999998887655
No 5
>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.3e-28 Score=179.10 Aligned_cols=99 Identities=29% Similarity=0.477 Sum_probs=92.2
Q ss_pred ccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcch
Q psy6284 9 QWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSW 88 (270)
Q Consensus 9 ~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~ 88 (270)
...+..+.|+||||+|++|||||+.||..|+|+|||+|||++||||+|+|+|++++.+||.+...+.|++|++|++|...
T Consensus 7 k~~~~~r~w~vIDA~g~vLGRLAs~VA~~Lrgkhkp~ytP~~d~Gd~ViVINAeKv~iTG~K~~~k~yy~hs~~~gglk~ 86 (148)
T COG0102 7 KPSEVERKWYVIDAEGKVLGRLASEVAKRLRGKHKPTYTPHVDTGDYVIVINAEKVVITGKKLTDKKYYRHSGYPGGLKN 86 (148)
T ss_pred CcccccceEEEEeCCCCChHHHHHHHHHHHhcCCCCCcCcCcCCCCEEEEEeceeeEEecccccceEEEEeeccCCcccc
Confidence 34458999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhc-cCcchhhhhhh
Q psy6284 89 TLAWQLHE-IDPTLDKACEE 107 (270)
Q Consensus 89 ~~~~~l~~-~~p~~~~~~~~ 107 (270)
.+...+.. +.|+.++....
T Consensus 87 ~t~~~~~~~r~P~ri~~~AV 106 (148)
T COG0102 87 PTRGGPLAPRRPERILERAV 106 (148)
T ss_pred cccccccccCCHHHHHHHHH
Confidence 88878877 88999887664
No 6
>PLN00205 ribisomal protein L13 family protein; Provisional
Probab=99.95 E-value=2.1e-28 Score=186.33 Aligned_cols=97 Identities=34% Similarity=0.407 Sum_probs=91.9
Q ss_pred ccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhh
Q psy6284 11 NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTL 90 (270)
Q Consensus 11 ~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~ 90 (270)
...++.||||||+|++|||+|+.||+.|+|||||+|+|++||||+|||+||+++.+||.+|..+.|++||+|++|....+
T Consensus 11 ~~~~r~W~VIDA~~~iLGRLAS~IAk~L~GKhKP~ytP~~D~GD~VVVINAekI~lTG~K~~~K~Y~~htgypGglk~~~ 90 (191)
T PLN00205 11 NLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYAPNRDDGDICIVLNAKDISVTGRKLTDKFYRWHTGYIGHLKERS 90 (191)
T ss_pred ccCCCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCCcCCCCEEEEEeccEEEEeCChhhcceEEEecCCCCCccccc
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCcchhhhhhh
Q psy6284 91 AWQLHEIDPTLDKACEE 107 (270)
Q Consensus 91 ~~~l~~~~p~~~~~~~~ 107 (270)
+.+++.+.|..++....
T Consensus 91 ~~~~~~r~P~~Il~kAV 107 (191)
T PLN00205 91 LKDQMAKDPTEVIRKAV 107 (191)
T ss_pred HHHHhccCHHHHHHHHH
Confidence 99999999998887554
No 7
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=99.95 E-value=1.8e-28 Score=174.74 Aligned_cols=91 Identities=41% Similarity=0.717 Sum_probs=88.5
Q ss_pred EEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhhc
Q psy6284 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHE 96 (270)
Q Consensus 17 ~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~~ 96 (270)
||||||+|++|||+|+.||+.|+|||||+|||++||||+|+|+||+++.++|.++..+.|++|++||++....+..+++.
T Consensus 1 w~viDA~~~~lGRlAs~iA~~L~gKhKp~y~p~~d~Gd~VvViNa~~i~~tG~k~~~k~y~~~~~~~g~~~~~~~~~~~~ 80 (114)
T cd00392 1 WHVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGKKWRQKVYYRHTGYPGGLKNPTAGPLHP 80 (114)
T ss_pred CEEEeCCCCchHHHHHHHHHHHcCCCCCCcCCCccCCCEEEEEeccEEEEeCchhhccceEEeccCCCCCccCCcchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhh
Q psy6284 97 IDPTLDKACEE 107 (270)
Q Consensus 97 ~~p~~~~~~~~ 107 (270)
+.|..++....
T Consensus 81 ~~P~~il~~aV 91 (114)
T cd00392 81 RAPERILKRAV 91 (114)
T ss_pred hCHHHHHHHHH
Confidence 99999987665
No 8
>PF00572 Ribosomal_L13: Ribosomal protein L13; InterPro: IPR005822 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L13 is one of the proteins from the large ribosomal subunit []. In Escherichia coli, L13 is known to be one of the early assembly proteins of the 50S ribosomal subunit.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 4A17_I 4A1E_I 4A1A_I 4A1C_I 3D5B_N 3MS1_J 1VSP_H 3PYT_J 3PYO_J 3PYV_J ....
Probab=99.93 E-value=7e-27 Score=170.21 Aligned_cols=91 Identities=45% Similarity=0.761 Sum_probs=87.9
Q ss_pred EEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhhc
Q psy6284 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHE 96 (270)
Q Consensus 17 ~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~~ 96 (270)
|+||||+|++|||+|+.||+.|+|||||+|||++|+||+|+|+||+++.+||.+|..+.|++|++||++....+...+..
T Consensus 1 W~viDA~~~~lGRLAs~iAk~L~GKhk~~y~p~~d~Gd~VvViNae~i~~tG~k~~~k~y~~h~~~~g~~~~~~~~~~~~ 80 (128)
T PF00572_consen 1 WYVIDAKGQILGRLASKIAKLLLGKHKPTYTPNVDCGDHVVVINAEKIVLTGKKWRQKVYYRHTGYPGGLKNPTAKGLHE 80 (128)
T ss_dssp EEEEETTTBBHHHHHHHHHHHHCTTSSTSSBTTSSTTEEEEEECGGGBEESSHHHHHHHHHHEHSSSTSCEEEECHHHHC
T ss_pred CEEEeCCCCchHHHHHHHHHHHhCCCCCccCcCccCCCEEEEEcCeeeEecCCeecceEEEeecccchhhcccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcchhhhhhh
Q psy6284 97 IDPTLDKACEE 107 (270)
Q Consensus 97 ~~p~~~~~~~~ 107 (270)
++|..++....
T Consensus 81 ~~P~~i~~~aV 91 (128)
T PF00572_consen 81 KDPSRILKRAV 91 (128)
T ss_dssp SSHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 99999987665
No 9
>KOG0543|consensus
Probab=99.92 E-value=5.9e-25 Score=184.93 Aligned_cols=218 Identities=29% Similarity=0.325 Sum_probs=179.3
Q ss_pred HHHHHHHHcCCCCCcccCCCC------CCCeEEEecCceeeeeccc-cccccccCCCCCCCCcchhhhhhhhccCcchhh
Q psy6284 31 AKVISKHLQGQHKPIYHPLND------CGDHVIVMNSRHIALPGYE-WKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDK 103 (270)
Q Consensus 31 ~~~v~~~l~g~~k~~~~p~~d------~gd~v~v~n~~~~~~~g~~-~~~k~y~~~t~y~~g~~~~~~~~l~~~~p~~~~ 103 (270)
++.|.+++.|++....+...+ .|+...|+.+.++++..++ ++....+-.+.|.+|........++ |+..+
T Consensus 104 g~~V~v~~~G~~~~~~f~~~~~~fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~~p~IP---PnA~l 180 (397)
T KOG0543|consen 104 GAVVKVHLEGELEDGVFDQRELRFEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGEPPLIP---PNATL 180 (397)
T ss_pred CcEEEEEEEEEECCcceeccccceEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCCCCCCC---CCceE
Confidence 455778888887765333322 2676778888899998887 5666666677898885555555555 77766
Q ss_pred hhhhhccCCCCc-ccccchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HH
Q psy6284 104 ACEELDKQDSDE-DEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---------------AV 167 (270)
Q Consensus 104 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~ 167 (270)
.+..- +..++ .....+.+...++++.|...++.|+.+|+.|+|..|...|.+|++.-++. ..
T Consensus 181 ~yEVe--L~~f~~~~~~s~~~~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~ 258 (397)
T KOG0543|consen 181 LYEVE--LLDFELKEDESWKMFAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLA 258 (397)
T ss_pred EEEEE--EEeeecCcccccccchHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHH
Confidence 65543 34444 56677777777899999999999999999999999999999999875432 24
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
+++|+|.|++++++|.+|+..|+++|.++|+|.+|+|++|.++..+|+|+.|+.+|+++++++|+|..+...|..|..+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCCCc
Q psy6284 248 NIPLSP 253 (270)
Q Consensus 248 ~~~~~a 253 (270)
..+.+.
T Consensus 339 ~~~~~k 344 (397)
T KOG0543|consen 339 REYEEK 344 (397)
T ss_pred HHHHHH
Confidence 665544
No 10
>KOG0553|consensus
Probab=99.91 E-value=2.3e-23 Score=168.89 Aligned_cols=125 Identities=37% Similarity=0.567 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR 206 (270)
Q Consensus 127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 206 (270)
+....|+.++..|+.+++.++|.+|+..|++||.++|.++..|+|+|.+|.++|.++.|+.+|+.+|.+||.++++|.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPL 251 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 251 (270)
|.+|..+|++++|++.|+++|+++|+|...+..|..+..++++..
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999998887
No 11
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.78 E-value=1e-17 Score=127.01 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=109.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
+...|..++..|++++|+.+|.+++..+|.+..++.++|.++..+|++++|+..|++++.++|+++.+++++|.++..+|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 215 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
++++|+..|+++++++|+++.++..++.+...++
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887654
No 12
>KOG0548|consensus
Probab=99.78 E-value=4.1e-18 Score=147.56 Aligned_cols=120 Identities=32% Similarity=0.532 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
+.+...+..|+.+|+.|+|..|+.+|+++|..+|+++.+|.|+|.||.+++.+..|+.+|+++++++|++.++|++.|.+
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~a 435 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAA 435 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 34778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
+..+.+|++|++.|++++++||++.++...+..|...+..
T Consensus 436 l~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~ 475 (539)
T KOG0548|consen 436 LRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRG 475 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999886533
No 13
>KOG4234|consensus
Probab=99.76 E-value=1.7e-17 Score=127.26 Aligned_cols=127 Identities=33% Similarity=0.566 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Q psy6284 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK 201 (270)
Q Consensus 127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 201 (270)
..+..+..++..||.+|+.|+|.+|...|..||+++|.. ..+|.|+|.|+++++..+.|+.+|.++|.++|.+.+
T Consensus 90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k 169 (271)
T KOG4234|consen 90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK 169 (271)
T ss_pred HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH
Confidence 346778899999999999999999999999999999986 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a 253 (270)
|+.++|.+|..+..|++|+++|.+.++.+|...++...+..+-..+.+.-+.
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999999999999998888776555544333
No 14
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.75 E-value=6.2e-17 Score=140.46 Aligned_cols=116 Identities=24% Similarity=0.404 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.++..|+.+|..|+|.+|+..|+++|+++|+++.+|+++|.|++.+|++++|+.++++++.++|.+..+|+++|.++..+
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
|++++|+..|+++++++|++..+...++.|..++..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999887744
No 15
>KOG4648|consensus
Probab=99.72 E-value=2.8e-17 Score=135.64 Aligned_cols=117 Identities=48% Similarity=0.743 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
+..+-+++++||.||++|.|++||.+|.+++..+|+++..+.|+|.+|++++.|..|..+|+.++.+|..+.+||.++|.
T Consensus 94 L~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 94 LKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQ 173 (536)
T ss_pred HHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 245 (270)
+...+|..++|.++++.+|+++|++.+....++.+..
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 9999999999999999999999999888877776643
No 16
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.69 E-value=2.4e-15 Score=112.81 Aligned_cols=114 Identities=9% Similarity=0.006 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
.+.++..|..++..|++++|...|+-...++|.+...|+++|.|+..+|+|.+|+..|.+++.++|+++.++++.|.|++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHH
Q psy6284 212 SLNHFEDARKDILKVLALE---PNNKQAEIELAELNR 245 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~---p~~~~a~~~l~~~~~ 245 (270)
.+|+.+.|++.|+.++..- |++..........+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~ 151 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQ 151 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH
Confidence 9999999999999999987 444444444443333
No 17
>KOG4626|consensus
Probab=99.69 E-value=9e-17 Score=141.38 Aligned_cols=131 Identities=20% Similarity=0.160 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
|..+-+.|..|+.+|+.+.||..|+++|++.|+++++|+|+|.++-..|+..+|..+|.+++.+.|+++.+.+++|.++.
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44444555666677777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCC
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNP 262 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~ 262 (270)
++|.+++|...|.++++..|+...+..+|+.++...|+..+++. ..++..|
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKP 419 (966)
T ss_pred HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCc
Confidence 77777777777777777777777777777777777777766665 4444444
No 18
>KOG0547|consensus
Probab=99.68 E-value=6.6e-16 Score=132.58 Aligned_cols=124 Identities=33% Similarity=0.530 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q psy6284 124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAY 203 (270)
Q Consensus 124 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 203 (270)
...++...|..++.+||.+|+.|+|++||.+|++||+++|+.+..|.|++.||..+|++++.+++|.++++++|++.+++
T Consensus 107 ~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl 186 (606)
T KOG0547|consen 107 LKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKAL 186 (606)
T ss_pred ChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHH
Confidence 33456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHh
Q psy6284 204 QRRAAARRSLNHFEDARKDILKVLALE-PNNKQAEIELAELNRKL 247 (270)
Q Consensus 204 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~ 247 (270)
+|++.++..+|++.+|+.+..-..-++ =+|...--.+.+++.++
T Consensus 187 ~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~ 231 (606)
T KOG0547|consen 187 LRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQ 231 (606)
T ss_pred HHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHH
Confidence 999999999999999999987443322 23444444444444443
No 19
>KOG0548|consensus
Probab=99.68 E-value=4.2e-16 Score=135.17 Aligned_cols=113 Identities=31% Similarity=0.455 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+...+++||..|..|+|+.|+.+|..+|.++|.+...|.|+..||..+++|++|+.+..+.+.++|+++++|.++|.++.
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~ 81 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALF 81 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
.+|+|++|+..|.+.|+.+|+|...+..|..+.
T Consensus 82 ~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 82 GLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred hcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999999999999999999999987
No 20
>KOG4626|consensus
Probab=99.67 E-value=4.9e-16 Score=136.79 Aligned_cols=133 Identities=19% Similarity=0.213 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+.+.|+.+...|.+++|...|.++++..|....++.|+|.+|..+|++++|+.+|+++|.++|....++.++|..|.
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHH
Confidence 56677788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
.+|+...|+++|.+|+.++|...+|..+|+.++...|+-.+++. ..+...|-+
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 88888888888888888888888888888888888888877776 555555543
No 21
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.65 E-value=1.4e-14 Score=108.49 Aligned_cols=113 Identities=17% Similarity=0.189 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
......|..++..|++++|+..|++++..+|.++.++.++|.++..++++++|+..+++++..+|.++..++.+|.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNR 245 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 245 (270)
.|++++|+..|+++++++|++.........+..
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 130 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPEYSELKERAEA 130 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 999999999999999999999987766665544
No 22
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.64 E-value=8.8e-15 Score=124.22 Aligned_cols=124 Identities=23% Similarity=0.206 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..++++|..+...|++++|+..|+++++++|+++.+|+++|.++..+|++++|+..|+++++++|++..+++++|.++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
...|++++|+++|+++++++|+++.....+ .+....+++.+++.
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~-~l~~~~~~~~~A~~ 186 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPYRALWL-YLAESKLDPKQAKE 186 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHccCCHHHHHH
Confidence 999999999999999999999998422222 22233444555444
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.63 E-value=1.1e-14 Score=135.65 Aligned_cols=122 Identities=25% Similarity=0.234 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.+...|..++..|++++|+..|+++++++|.+..+|+++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~ 412 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIK 412 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|++++|+.+|+++++++|++..++..++.++..+|++.+++.
T Consensus 413 g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 454 (615)
T TIGR00990 413 GEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMA 454 (615)
T ss_pred CCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 555555555555555555555555555555555555555544
No 24
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.62 E-value=8.6e-15 Score=116.77 Aligned_cols=111 Identities=17% Similarity=0.112 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCF-LKMKN--YVSAEADCTASLKLDNTYVKAYQRR 206 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~-~~~~~--~~~A~~~~~~al~~~p~~~~a~~~~ 206 (270)
..+..|...|..+...|++++|+..|.+++.+.|+++.++.++|.++ ...|+ +++|...+++++..+|++..+++.+
T Consensus 71 ~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~L 150 (198)
T PRK10370 71 QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLL 150 (198)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHH
Confidence 34566788888888888888888888888888888888888888764 56666 4888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
|.+++..|++++|+..|+++++++|.+..-...+
T Consensus 151 A~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 151 ASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 8888888888888888888888887665444444
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.60 E-value=2.7e-14 Score=133.13 Aligned_cols=131 Identities=13% Similarity=0.089 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...+...|..++..|++++|+..|+++++.+|+++.+++++|.+++.+|++++|+.+|++++.++|++..+++.+|.++.
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCC
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNP 262 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~ 262 (270)
.+|++++|+..|+++++..|+++.++..++.++..+|++.+++. ..+..+|
T Consensus 445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999988877 4444444
No 26
>KOG0545|consensus
Probab=99.60 E-value=1.7e-14 Score=114.18 Aligned_cols=152 Identities=27% Similarity=0.384 Sum_probs=128.8
Q ss_pred ccCcchhhhhhhhccCCCCccc-ccchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCC-
Q psy6284 96 EIDPTLDKACEELDKQDSDEDE-ESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT--------YPHD- 165 (270)
Q Consensus 96 ~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~--------~p~~- 165 (270)
.++|....-..++..+..++.+ .+.|.++..++......+.+.||.+|+.|+|.+|...|..|+.. .|.+
T Consensus 141 ~knPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~ 220 (329)
T KOG0545|consen 141 QKNPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP 220 (329)
T ss_pred hhCCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh
Confidence 3567766666667666666665 66789999999999999999999999999999999999999853 4554
Q ss_pred ---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-H
Q psy6284 166 ---------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK-Q 235 (270)
Q Consensus 166 ---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~ 235 (270)
..++.|.+.|++..++|-++++.|..++..+|.|.+|||++|.+....-+.++|.++|.++|+++|.-. .
T Consensus 221 eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 221 EWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 358999999999999999999999999999999999999999999999999999999999999999754 4
Q ss_pred HHHHHHHHHHHh
Q psy6284 236 AEIELAELNRKL 247 (270)
Q Consensus 236 a~~~l~~~~~~~ 247 (270)
+...|..+..+.
T Consensus 301 VsrElr~le~r~ 312 (329)
T KOG0545|consen 301 VSRELRLLENRM 312 (329)
T ss_pred HHHHHHHHHHHH
Confidence 445555554433
No 27
>KOG0550|consensus
Probab=99.60 E-value=5e-15 Score=124.94 Aligned_cols=119 Identities=32% Similarity=0.488 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQ 204 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 204 (270)
....+.+++.|+..|+.|+|.+|.++|+.+|.++|++ ..+|.|+|.+..++|+..+|+.+|+.++.+||.+.+++.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 4456779999999999999999999999999999986 568999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 205 RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 205 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
++|.|+..+++|++|+++|++|+++..+ ......+..+...|.
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHH
Confidence 9999999999999999999999999876 555555555544443
No 28
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.58 E-value=1.8e-14 Score=109.25 Aligned_cols=110 Identities=10% Similarity=-0.007 Sum_probs=101.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284 152 IEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231 (270)
Q Consensus 152 ~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p 231 (270)
...|+++++++|++ ++++|.++...|++++|+..|.+++.++|.+..+|+.+|.++..+|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35799999999886 668999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 232 NNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 232 ~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
+++.++..++.++..+|++.+++. ..+..+|..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999999887 555555543
No 29
>KOG1126|consensus
Probab=99.58 E-value=3.6e-15 Score=132.25 Aligned_cols=135 Identities=15% Similarity=0.112 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
.+.|...||++--+++++.||++|++|+.++|.+.-+|..+|.=+..+.+|+.|..+|++|+..+|.+..|||.+|.+|.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCccc
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHLT 266 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~ 266 (270)
++++++.|.-.|++|+++||.|......++.++.++|...+|+. ..+..+|-.+-
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l 558 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL 558 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999999999999999999999999877 66666665544
No 30
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.57 E-value=1.5e-13 Score=108.16 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
..+....+.|..|+..|++..|...+++||+.+|++..+|..+|..|.++|+.+.|.+.|++|+.++|++..++.+.|.-
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~F 112 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHH
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 210 RRSLNHFEDARKDILKVLAL--EPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
++.+|++++|.+.|++|+.. -|.-...+.+++.|-.+.|++..+.. +.+-++|..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~ 172 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF 172 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC
Confidence 99999999999999998863 23456888899999888888887766 666555543
No 31
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.56 E-value=1.9e-13 Score=109.02 Aligned_cols=125 Identities=18% Similarity=0.121 Sum_probs=116.6
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--HHHHH
Q psy6284 144 KEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR-RSLNH--FEDAR 220 (270)
Q Consensus 144 ~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~-~~~g~--~~~A~ 220 (270)
..++.++++..+.+++..+|++...|.++|.++..+|++++|+..|++++.++|++..+++.+|.++ ...|+ +++|+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 3678899999999999999999999999999999999999999999999999999999999999985 67787 59999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCccccc
Q psy6284 221 KDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHLTRD 268 (270)
Q Consensus 221 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~ 268 (270)
+.++++++++|++..++..++.++...|++.+|+. ..+..+|+..+|.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999988 6677888877764
No 32
>KOG1155|consensus
Probab=99.55 E-value=5e-14 Score=120.46 Aligned_cols=118 Identities=19% Similarity=0.169 Sum_probs=114.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFE 217 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~ 217 (270)
.||-|.-+++.++|+.+|++|+.++|....+|..+|.=|+.+++...|++.|++|++++|.+..|||.+|++|..++-+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 58888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 218 DARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 218 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
=|+-+|++|+++-|+|+..|..||.|+.++++..+|++
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999988
No 33
>TIGR01077 L13_A_E ribosomal protein L13, archaeal/eukaryotic. This model represents ribosomal protein of L13 from the Archaea and from the eukaryotic cytosol. Bacterial and organellar forms are represented by TIGR01066.
Probab=99.54 E-value=4.9e-15 Score=109.60 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=68.4
Q ss_pred EEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhhcc
Q psy6284 18 HIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEI 97 (270)
Q Consensus 18 ~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~~~ 97 (270)
+||||+|++|||+|+.||+.|. |||+|+|+||+++.+||.++..+.|+.|+...+.....+...++.+
T Consensus 1 ivIDA~~~vlGRLAs~IA~~L~------------~Gd~VvViNaeki~~TG~k~~~k~~y~~~~~~g~~~~~~~~~~~~r 68 (142)
T TIGR01077 1 TVIDGSGHILGRLASVVAKQLL------------NGEKVVVVNAEKIVISGNFYRNKLKYKEFLRKRTLTNPRRGPFFPR 68 (142)
T ss_pred CEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEechHheecCchhhheeEEEEECCCCCcccCCHHHhhhc
Confidence 4899999999999999999997 9999999999999999999999999999865555555466888889
Q ss_pred Ccchhhhhhh
Q psy6284 98 DPTLDKACEE 107 (270)
Q Consensus 98 ~p~~~~~~~~ 107 (270)
.|..++....
T Consensus 69 ~P~~il~~aV 78 (142)
T TIGR01077 69 APSRIFRRTV 78 (142)
T ss_pred CHHHHHHHHH
Confidence 9998887665
No 34
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=3.1e-13 Score=124.27 Aligned_cols=123 Identities=12% Similarity=-0.123 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+...|..+...|++++|+..|+++++++|+++.+++++|.++..+|++++|+..+++++.++|.++.+++.++.+++.
T Consensus 339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~ 418 (553)
T PRK12370 339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY 418 (553)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 34455666666777777777777777777777777777777777777777777777777777777766666556666666
Q ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALE-PNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|++++|+..++++++.+ |+++.++..++.++..+|+..+|..
T Consensus 419 ~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~ 462 (553)
T PRK12370 419 HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARK 462 (553)
T ss_pred ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHH
Confidence 677777777777776664 5666667777777767777666655
No 35
>PTZ00068 60S ribosomal protein L13a; Provisional
Probab=99.51 E-value=1.5e-14 Score=112.32 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=64.0
Q ss_pred eEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhh
Q psy6284 16 IWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLH 95 (270)
Q Consensus 16 ~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~ 95 (270)
.|+||||+|++|||+||.||+.|+ +||.|+|+||+++.+||.++.++.|++|..............++
T Consensus 4 ~w~vIDA~g~vLGRLAS~VAk~Ll------------~Gd~VVVVNaeki~iTG~k~~~K~~y~~~lk~~~~~nP~~g~~~ 71 (202)
T PTZ00068 4 KVIVIDCKGHLLGRLASVVAKELL------------LGQKIVVVRCEDLNISGSLFRNKVKYEEFLRKRMNTNPRRGPFH 71 (202)
T ss_pred ceEEEECCCCcHHHHHHHHHHHHh------------CCCEEEEEecceeEeecchhhheeeeEeeeEeeccCCCCcchhc
Confidence 699999999999999999999999 99999999999999999999999999872222211111235666
Q ss_pred ccCcchhhhhhh
Q psy6284 96 EIDPTLDKACEE 107 (270)
Q Consensus 96 ~~~p~~~~~~~~ 107 (270)
.+.|+.++....
T Consensus 72 ~r~P~~Il~raV 83 (202)
T PTZ00068 72 HRAPSDIFWRTV 83 (202)
T ss_pred ccCHHHHHHHHH
Confidence 677887776554
No 36
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.50 E-value=1.2e-12 Score=95.49 Aligned_cols=108 Identities=16% Similarity=0.209 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRR 206 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~ 206 (270)
..++..|..++..|++++|+..|.+++...|++ ..+++.+|.++...+++++|+..|++++..+|++ +.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 357888999999999999999999999999876 5789999999999999999999999999999875 6789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
|.++..+|++++|+..+.++++..|++..+....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 116 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ 116 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence 9999999999999999999999999998776543
No 37
>PRK12370 invasion protein regulator; Provisional
Probab=99.50 E-value=5.2e-13 Score=122.78 Aligned_cols=111 Identities=14% Similarity=-0.015 Sum_probs=104.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
.+++++|+..++++++++|+++.++..+|.++..+|++++|+..|++++.++|+++.+++.+|.++...|++++|+..|+
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 225 KVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 225 ~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++++++|.+..+...++.++...|++.+|+.
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 9999999999887777777788898887776
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.50 E-value=7.3e-13 Score=127.54 Aligned_cols=125 Identities=15% Similarity=0.104 Sum_probs=111.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~ 218 (270)
+......|++++|+..|.++++.+|+ ..++.++|.++.++|++++|+..+++++.++|+++.+++.+|.++...|++++
T Consensus 583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33444559999999999999999996 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 219 ARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
|+..|+++++++|+++.++.+++.++..+|++.+++. ..+..+|..
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999999999988876 555555543
No 39
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=2.6e-12 Score=103.93 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD--NTYVKAYQRRAA 208 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~ 208 (270)
....+...|..++..|++++|+..|.++++..|.+..++.++|.++...|++++|+..+++++... +.....++.+|.
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 355677889999999999999999999999999999999999999999999999999999999854 456778999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++...|++++|...|.+++..+|++..++..++.++...|++.++..
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 190 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999988876
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.47 E-value=8.2e-13 Score=127.22 Aligned_cols=124 Identities=10% Similarity=-0.033 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+...|..+.+.|++++|+..|.+++.++|+++.++.++|.++..+|++++|+..|++++.++|+++.+++++|.++.
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+|++++|+..|+++++++|++..+....+.+.....++..+..
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877665544443
No 41
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.47 E-value=1.1e-12 Score=121.95 Aligned_cols=126 Identities=9% Similarity=0.052 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
..+..+...|......|.+++|...+..++++.|++..+..+++.++.+++++++|+..+++++..+|++..+++.+|.+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+..+|++++|+..|++++..+|+++.++..++.++...|+..+|..
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999999999988765
No 42
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.47 E-value=6.4e-13 Score=99.47 Aligned_cols=103 Identities=17% Similarity=0.104 Sum_probs=99.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 153 EKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 153 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
..|.+++..+|.+..+.+.+|.+++..+++++|+..+++++.++|.++.+++.+|.++..+|++++|+..|+++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 233 NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 233 ~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+...+..++.++...|++.+++.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALK 106 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999988866
No 43
>KOG1126|consensus
Probab=99.46 E-value=6.8e-13 Score=118.01 Aligned_cols=133 Identities=16% Similarity=0.116 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
....|+-.|.+|.++++++.|.-+|++|++++|.+.......|..+.++|+.++|+..+++|+.+||.++-.-|.+|.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 35568889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
+.++++++|+..++++-++-|++..++..++.++.++|+..-|+. ..+..+|.
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 999999999999999999999999999999999999999888877 34444443
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.46 E-value=3.3e-12 Score=103.31 Aligned_cols=124 Identities=20% Similarity=0.235 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
...+...|..++..|++++|+..|.+++... +.....+.++|.++...|++++|+..+.+++..+|.+..+++.+|.+
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 3456778899999999999999999998753 45677889999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+...|++++|+..+++++...|.++..+..++.+....|+..++..
T Consensus 179 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 179 YYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999989888888888888888888777654
No 45
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.46 E-value=3.8e-13 Score=88.67 Aligned_cols=67 Identities=25% Similarity=0.356 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy6284 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN-HFEDARKDILKVLALEP 231 (270)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~~~p 231 (270)
++..|.++|.+++.++++++|+..|++++.++|+++.+++++|.++..+| ++++|+++|+++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34555666666666666666666666666666666666666666666665 46666666666666655
No 46
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=1.5e-12 Score=110.54 Aligned_cols=119 Identities=14% Similarity=0.093 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHHHhhCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy6284 146 GKWGEAIEKYNVAIQTYP---H-DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARK 221 (270)
Q Consensus 146 g~~~~A~~~y~~al~~~p---~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 221 (270)
+..+.++..+.++|...| . .+..|+++|.++..+|++++|+.+|++++.++|+++.+|+.+|.++..+|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456888999999997444 3 367899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 222 DILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 222 ~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
.|+++++++|++..++..++.++...|++.+++. ..+..+|..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999987 555556643
No 47
>KOG0551|consensus
Probab=99.45 E-value=8e-13 Score=108.96 Aligned_cols=111 Identities=35% Similarity=0.438 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 205 (270)
+.|+-+++.||.+|+.++|..|+..|.++|...-.+ ..+|.|||.|.+.+|+|..|+.+|.+++.++|.+.+++++
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 478889999999999999999999999999985444 5789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
-|.|++.+.++++|...++..+.++-+...+....
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~ 193 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELR 193 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 99999999999999999988887765555444433
No 48
>KOG0547|consensus
Probab=99.44 E-value=5.5e-13 Score=114.86 Aligned_cols=124 Identities=23% Similarity=0.229 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
++.+...|..+|-.|++-.|...|+++|.++|.+...|..+|.+|...++.++...+|+++..+||.++..||-+|++++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 55677789999999999999999999999999888888889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
-++++++|+.+|++|+.++|++.-++..+.-++.+++...+++.
T Consensus 406 lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~ 449 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMK 449 (606)
T ss_pred HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888888888887766655
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=7.1e-13 Score=111.75 Aligned_cols=125 Identities=20% Similarity=0.191 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
....+...|..+.+.|++++|+..|+++++.+|++..+...++.++...|+++++...+.......|.++..+..+|.++
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAY 224 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence 45568889999999999999999999999999999999999999999999999999999998888888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+|++++|+..|+++++.+|+|+.+...++.++...|+..+|..
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999876
No 50
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.44 E-value=5.1e-12 Score=101.37 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+...|...+..|+|..|+..+.++..+.|++..+|..+|.+|.++|++++|...|.+++++.|..+.+..++|+.+.-
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 34555899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|+++.|...+..+...-+.+..+..+|+.+....|++.++..
T Consensus 181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence 9999999999999999999999999999999999999877755
No 51
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.44 E-value=8.2e-12 Score=97.62 Aligned_cols=105 Identities=19% Similarity=0.229 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 205 (270)
...+..++..|..+...|++++|+.+|+++++..|+. ..++.++|.++..+|++++|+..+.+++..+|.+..++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3456678999999999999999999999999987653 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHcCC--------------HHHHHHHHHHHHhhCCCC
Q psy6284 206 RAAARRSLNH--------------FEDARKDILKVLALEPNN 233 (270)
Q Consensus 206 ~g~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 233 (270)
+|.++..+|+ +++|++.+++++.++|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 9999999988 688999999999999988
No 52
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.44 E-value=3.2e-12 Score=119.66 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=86.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVS----AEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.|..+...|++++|+..|.+++...|+++.+++++|.++..+|++++ |+..|++++.++|++..++..+|.++...
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 35566677777777777777777777777777777777777777764 67777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|++++|+..++++++++|+++.++..++.++..+|++.+++.
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 777777777777777777777777777777777777766655
No 53
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.44 E-value=3e-12 Score=100.84 Aligned_cols=124 Identities=17% Similarity=0.107 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--DNTYVKAYQRRAAA 209 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~ 209 (270)
...+.-++..|.+.|+.+.|-+.|++|++++|++.++++|.|..++.+|++++|...|++|+.. .+.-+.++-++|.|
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~C 148 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLC 148 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHH
Confidence 4567778999999999999999999999999999999999999999999999999999999964 35678899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+.|+++.|..+|+++|+++|+++.+...+...+.+-|++..+-.
T Consensus 149 al~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 149 ALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred HhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 9999999999999999999999999999999999999999887754
No 54
>KOG4642|consensus
Probab=99.44 E-value=4e-13 Score=105.99 Aligned_cols=114 Identities=32% Similarity=0.428 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..+++.|+.+|....|..|+.+|.++|.++|..+..|.|+|.||+++++++.+..+|.+++.++|+..+++|.+|.+.
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHH
Q psy6284 211 RSLNHFEDARKDILKVLALEPN-----NKQAEIELAELN 244 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~l~~~~ 244 (270)
.....|++|+..++++..+-.. -..+...|..+.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK 127 (284)
T ss_pred HhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999999999654321 234555555553
No 55
>PRK15331 chaperone protein SicA; Provisional
Probab=99.44 E-value=6.2e-12 Score=94.92 Aligned_cols=116 Identities=9% Similarity=-0.023 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
+..+..|..+|.+|++++|...|+-..-++|.++..+.++|.|+..+++|++|+..|..+..++++++...|..|.|+..
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 35677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
+|+.+.|+.+|+.++. .|++..........+..+.+
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~ 153 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT 153 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence 9999999999999999 68888777766655554433
No 56
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.43 E-value=3.8e-12 Score=87.65 Aligned_cols=99 Identities=32% Similarity=0.425 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.+...|..++..|++++|+..+.++++..|.+..+++.+|.++...+++++|+..+++++...|.+..+++.+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q psy6284 214 NHFEDARKDILKVLALEPN 232 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~ 232 (270)
|++++|...+.++++.+|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 57
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.43 E-value=4.6e-13 Score=88.26 Aligned_cols=67 Identities=31% Similarity=0.453 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCC
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDN 197 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p 197 (270)
.+..+...|..++..|+|++|+.+|+++++++|+++.+++++|.|+..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35678999999999999999999999999999999999999999999999 79999999999999998
No 58
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.43 E-value=4.1e-12 Score=118.92 Aligned_cols=132 Identities=13% Similarity=0.035 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGE----AIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~----A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g 207 (270)
...+...|..++..|++++ |+..|++++.++|++..++.++|.++..+|++++|+..+++++.++|+++.+++.+|
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456678999999999996 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
.++...|++++|+..|++++..+|++..+...++.++..+|+..+++. ..+..+|.
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999999888888999999999988877 34444443
No 59
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.43 E-value=4.3e-12 Score=104.14 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---HHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA---VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK---AYQR 205 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~ 205 (270)
+..++..|..++..|+|++|+..|.+++...|.++ .+++.+|.++..++++++|+..+++++...|+++. +++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 44678899999999999999999999999999876 68899999999999999999999999999998776 7999
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhCCCCCcch
Q psy6284 206 RAAARRSL--------NHFEDARKDILKVLALEPNNKQAE-----------------IELAELNRKLNIPLSPIK 255 (270)
Q Consensus 206 ~g~~~~~~--------g~~~~A~~~~~~al~~~p~~~~a~-----------------~~l~~~~~~~~~~~~a~~ 255 (270)
+|.++... |++++|++.|+++++.+|++..+. ..++.++...|++.+++.
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 99999876 889999999999999999997654 245666777888888877
No 60
>KOG0624|consensus
Probab=99.43 E-value=1.8e-12 Score=107.49 Aligned_cols=113 Identities=26% Similarity=0.356 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.++..++.|+.++-.|++..|+..|..|++.+|++..+++.+|.+|+.+|+...|+.++.++|++.|+...|...+|.++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHH
Q psy6284 211 RSLNHFEDARKDILKVLALEPNN---KQAEIELAEL 243 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~~ 243 (270)
.++|+++.|..+|.++|+-+|++ .++...++.+
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~ 152 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALI 152 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhH
Confidence 99999999999999999999954 4555555544
No 61
>KOG1155|consensus
Probab=99.42 E-value=2.7e-12 Score=110.02 Aligned_cols=123 Identities=20% Similarity=0.159 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..|.-.|..+...++...|+..|++|++++|.+..+|+.+|.+|--++-..=|+-.|++|+.+.|+++..|..+|.||.+
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k 444 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEK 444 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 34556788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+++.++|+++|.+++...-.+..++..|+.++.+++...+|..
T Consensus 445 l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 445 LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999999999999999999999999877755
No 62
>PRK06394 rpl13p 50S ribosomal protein L13P; Reviewed
Probab=99.41 E-value=3.9e-13 Score=99.90 Aligned_cols=76 Identities=14% Similarity=-0.008 Sum_probs=61.1
Q ss_pred EEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchh----hhh
Q psy6284 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWT----LAW 92 (270)
Q Consensus 17 ~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~----~~~ 92 (270)
-+||||+|++|||+|+.||+.|+ +||+|+|+||+++.+||.++..+.+ +++|+ +.... +..
T Consensus 4 ~~viDA~~~vlGRLAs~IA~~L~------------~Gd~VVViNa~kv~~tG~K~~~~~~--y~~~~-~~k~~~np~~~~ 68 (146)
T PRK06394 4 MVVIDAEGQILGRLASYVAKRLL------------EGEEVVIVNAEKAVITGNRERVIEK--YKQRR-ERGSHYNPYRNG 68 (146)
T ss_pred cEEEECCCCchHHHHHHHHHHHh------------CCCEEEEEechheEecCchhhheee--EeCCC-CCcccCCCCChH
Confidence 47999999999999999999999 5999999999999999999766444 44444 33333 457
Q ss_pred hhhccCcchhhhhhh
Q psy6284 93 QLHEIDPTLDKACEE 107 (270)
Q Consensus 93 ~l~~~~p~~~~~~~~ 107 (270)
.++.++|..++....
T Consensus 69 ~~~~r~P~~il~~AV 83 (146)
T PRK06394 69 PKYPRRPDRIFKRTI 83 (146)
T ss_pred HhhhcCHHHHHHHHH
Confidence 777888988877654
No 63
>KOG0376|consensus
Probab=99.41 E-value=3.8e-13 Score=116.10 Aligned_cols=117 Identities=36% Similarity=0.529 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..++++++.+++.+.|+.|+..|.+||+++|+.+..+.+++.++++.++|..|+.++.++++++|...++|+++|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
.++++.+|+.+|++...+.|+++.+...+.+|.....
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999976543
No 64
>KOG1125|consensus
Probab=99.41 E-value=1.3e-12 Score=114.59 Aligned_cols=120 Identities=16% Similarity=0.209 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
++...-.|..|+-.|+|++|+.+|+.||..+|++..+|..+|..+..-.+..+|+..|++|+.+.|.+..++|++|.++.
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 34455689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHhCCCC
Q psy6284 212 SLNHFEDARKDILKVLALEPN----------NKQAEIELAELNRKLNIPL 251 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~----------~~~a~~~l~~~~~~~~~~~ 251 (270)
.+|.|++|.++|-.||.+.+. +..+|..|..++..++++.
T Consensus 510 NlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 999999999999999999876 2358888988888887765
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.40 E-value=9.7e-12 Score=102.06 Aligned_cols=123 Identities=16% Similarity=0.048 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHhcCCCCHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV---FFANRALCFLKM--------KNYVSAEADCTASLKLDNTYVK 201 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~---~~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~~~ 201 (270)
..+...|..++..|++++|+..|+++++..|+++. +++.+|.++... +++++|+..+++++..+|++..
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence 35778899999999999999999999999998876 799999999987 8899999999999999998865
Q ss_pred HH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCCCCcch
Q psy6284 202 AY-----------------QRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 202 a~-----------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++ +.+|.++...|++++|+..|++++...|++ +.++..++.++..+|++.++..
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 42 467889999999999999999999997764 5899999999999999998877
No 66
>PLN02789 farnesyltranstransferase
Probab=99.40 E-value=1.7e-11 Score=104.62 Aligned_cols=118 Identities=14% Similarity=0.038 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEG-KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY--VSAEADCTASLKLDNTYVKAYQRR 206 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~al~~~p~~~~a~~~~ 206 (270)
.....+..+|..+...| ++++|+..+++++..+|.+..+|++++.++.++++. ++++..+++++.++|.|..+|..+
T Consensus 69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R 148 (320)
T PLN02789 69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHR 148 (320)
T ss_pred hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHH
Confidence 34557888899999888 689999999999999999999999999999999874 788999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
|.++..+|++++|++++.++|++||.|..||..++.+...+
T Consensus 149 ~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 149 QWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998776
No 67
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.38 E-value=4.4e-11 Score=93.13 Aligned_cols=104 Identities=19% Similarity=0.155 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g 207 (270)
.+..+...|..++..|+|++|+..|.+++.+.|+. +.+++++|.++..+|++++|+..|++++.++|.+..++..+|
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 56678899999999999999999999999987763 458999999999999999999999999999999999999999
Q ss_pred HHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q psy6284 208 AARR-------SLNHFE-------DARKDILKVLALEPNNK 234 (270)
Q Consensus 208 ~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 234 (270)
.++. .+|+++ +|+..|++++..+|++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 9999 777766 66666777888888664
No 68
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.36 E-value=5.6e-12 Score=94.76 Aligned_cols=97 Identities=13% Similarity=0.061 Sum_probs=92.4
Q ss_pred HhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy6284 159 IQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE 237 (270)
Q Consensus 159 l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 237 (270)
..+. ++..+..|.+|..++..|++++|...|+-+..+||.+...|+++|.++..+|++++|+..|.+++.++|+|+.+.
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 4567 788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcch
Q psy6284 238 IELAELNRKLNIPLSPIK 255 (270)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~ 255 (270)
.+++.|+..+|+...|..
T Consensus 107 ~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 107 WAAAECYLACDNVCYAIK 124 (157)
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 999999999999877766
No 69
>PLN02789 farnesyltranstransferase
Probab=99.36 E-value=1.1e-11 Score=105.77 Aligned_cols=123 Identities=12% Similarity=0.062 Sum_probs=111.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH--HH
Q psy6284 142 LVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF--ED 218 (270)
Q Consensus 142 ~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~--~~ 218 (270)
+...+.+++|+..+.++|.++|.+..+|..++.++..++ ++++++..+++++..+|.+..+|+.++.++..+|+. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 566789999999999999999999999999999999998 689999999999999999999999999999999874 78
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 219 ARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
++..+.++++++|.|..+|..++.++..+|.+.+++. ..+..+|.+
T Consensus 127 el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N 175 (320)
T PLN02789 127 ELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN 175 (320)
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc
Confidence 8999999999999999999999999999999888776 444445544
No 70
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.35 E-value=2.9e-12 Score=87.88 Aligned_cols=82 Identities=24% Similarity=0.357 Sum_probs=74.1
Q ss_pred HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy6284 144 KEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARK 221 (270)
Q Consensus 144 ~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 221 (270)
.+|+|+.|+..|+++++..|. +...++++|.|++++|+|++|+..+++ +..+|.+...++.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 467888899999999999999999999 88999999999999999999999999999
Q ss_pred HHHHH
Q psy6284 222 DILKV 226 (270)
Q Consensus 222 ~~~~a 226 (270)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 71
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.35 E-value=3.5e-11 Score=114.77 Aligned_cols=123 Identities=11% Similarity=0.101 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+...|..+...|++++|+..|+++++.+|.++.++.++|.++...+++++|+..+++++..+|++.. ++.+|.++.
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 3457788999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..|++++|+..|+++++++|++..++..++.++...+...+++.
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 99999999999999999999999999999999988777776654
No 72
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.35 E-value=2e-11 Score=121.25 Aligned_cols=127 Identities=17% Similarity=0.188 Sum_probs=111.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH--------------H
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK--------------A 202 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------a 202 (270)
..|..++..|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|++++.++|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45889999999999999999999999999999999999999999999999999999999997643 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 203 YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 203 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
...+|.++...|++++|+..|+++++++|++..++..++.++...|++.+++. ..+..+|.
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 23457888899999999999999999999999999999999999999988877 44444554
No 73
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.35 E-value=3.4e-11 Score=119.66 Aligned_cols=121 Identities=20% Similarity=0.151 Sum_probs=108.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-----
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA----- 209 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~----- 209 (270)
....|..+++.|++++|+..|++++..+|.+..+++++|.++..+|++++|+..|++++.++|++..++..++.+
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~ 433 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS 433 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 345688899999999999999999999999999999999999999999999999999999999988777655444
Q ss_pred -------------------------------------HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCC
Q psy6284 210 -------------------------------------RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLS 252 (270)
Q Consensus 210 -------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~ 252 (270)
+...|++++|++.|+++++++|+++.++..++.++..+|++.+
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4467999999999999999999999999999999999999988
Q ss_pred cch
Q psy6284 253 PIK 255 (270)
Q Consensus 253 a~~ 255 (270)
++.
T Consensus 514 A~~ 516 (1157)
T PRK11447 514 ADA 516 (1157)
T ss_pred HHH
Confidence 877
No 74
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.33 E-value=4e-11 Score=115.39 Aligned_cols=122 Identities=17% Similarity=0.169 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+...|..+...|++++|+..|+++++..|+++.++.++|.++...|+ .+|+..+++++.+.|+++..+..+|.++..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4456667777777888888888888888788877778888888877777 778888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|++++|+..|+++++.+|.++.++..++.++.+.|++.+++.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888888888888888888888888777665
No 75
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.32 E-value=6.3e-11 Score=113.99 Aligned_cols=125 Identities=22% Similarity=0.121 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..+...|..++..|++++|+..|+++++.+|.+..+++.+|.++...|++++|+..+++++..+|.+..+++.+|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
...|++++|+..|++++..+|++..++..++.++...|++.++..
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 248 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEK 248 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999888766
No 76
>KOG2076|consensus
Probab=99.32 E-value=7.3e-11 Score=108.34 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...+...||.+|-+|++++|+..+.++|+.+|.++.+|+.+|.+|..+|+.+.|+...-.|-.++|.+..-|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+|++..|+-+|.+||+.+|.+.......+.++.++|....|+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~ 262 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME 262 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH
Confidence 99999999999999999999999999999999999999998887
No 77
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.30 E-value=1.5e-11 Score=79.99 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=43.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy6284 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK 234 (270)
Q Consensus 171 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 234 (270)
.+|..++..|++++|+..|++++..+|.++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4666667777777777777777777777777777777777777777777777777777777664
No 78
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.30 E-value=2e-10 Score=95.29 Aligned_cols=111 Identities=12% Similarity=0.018 Sum_probs=99.1
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHH
Q psy6284 133 VYSKEQGNKL-VKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQR 205 (270)
Q Consensus 133 ~~~~~~g~~~-~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~ 205 (270)
...++.+..+ ++.|+|++|+..|++.+...|+. +.+++.+|.+|+..|++++|+..|.+++...|+ .+.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3456677776 67899999999999999999998 579999999999999999999999999998886 5779999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 243 (270)
+|.++..+|++++|+..|+++++..|+...+......+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL 260 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL 260 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence 99999999999999999999999999998776655443
No 79
>KOG4555|consensus
Probab=99.30 E-value=2.3e-10 Score=82.41 Aligned_cols=103 Identities=22% Similarity=0.231 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY----VKAYQ 204 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~ 204 (270)
++....+-.+|..+...|+.+.|++.|.++|.+.|..+.+|+|+|.++.-+|+.++|+.++++++++..+. ..+|.
T Consensus 40 ~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~v 119 (175)
T KOG4555|consen 40 IKASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFV 119 (175)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 34445566779999999999999999999999999999999999999999999999999999999987543 45789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284 205 RRAAARRSLNHFEDARKDILKVLALEP 231 (270)
Q Consensus 205 ~~g~~~~~~g~~~~A~~~~~~al~~~p 231 (270)
.+|.+|..+|+.+.|..+|+.+-++..
T Consensus 120 QRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 120 QRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 999999999999999999999887743
No 80
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.29 E-value=1.2e-10 Score=102.60 Aligned_cols=121 Identities=14% Similarity=0.095 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-VKAYQRRAAARRS 212 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~ 212 (270)
.+...|..++..|++++|+..|.++++..|++..+++.+|.++...|++++|+..+++++..+|.+ ..++..++.++..
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 355678888888999999999999998888888888999999999999999999999999888876 4567788888999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|++++|+..++++++.+|+...+ ..++.++.+.|++.+++.
T Consensus 262 ~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 262 LGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGPEAAQA 303 (389)
T ss_pred cCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHH
Confidence 999999999999999988877655 778888888888877766
No 81
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.29 E-value=8.2e-11 Score=103.61 Aligned_cols=121 Identities=16% Similarity=0.104 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-----VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
+...+..+.+.|++++|+..|.+++...|.+. ..+.++|.++...+++++|+..|++++..+|++..+++.+|.+
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 223 (389)
T PRK11788 144 LQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDL 223 (389)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHH
Confidence 33444444555555555555555554444331 1334455555555555555555555555555555555555555
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCCCCCcch
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNN-KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+...|++++|++.|++++..+|.+ ..++..++.++...|+..+++.
T Consensus 224 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 270 (389)
T PRK11788 224 ALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE 270 (389)
T ss_pred HHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555555555544 2344445555555555544444
No 82
>KOG1125|consensus
Probab=99.26 E-value=3e-11 Score=106.22 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
++...||.+|...++|+.|+.||+.||..+|++...|.++|-++..-.+.++|+..|++|+++.|+...++++|+....-
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN 510 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh
Confidence 36777888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCcch
Q psy6284 247 LNIPLSPIK 255 (270)
Q Consensus 247 ~~~~~~a~~ 255 (270)
+|-+.+|+.
T Consensus 511 lG~ykEA~~ 519 (579)
T KOG1125|consen 511 LGAYKEAVK 519 (579)
T ss_pred hhhHHHHHH
Confidence 999888877
No 83
>KOG0553|consensus
Probab=99.26 E-value=2.7e-11 Score=99.04 Aligned_cols=97 Identities=28% Similarity=0.280 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
+-+-+-|.=+++.++|.+|+..|.+||.++|.++..|.++|.+|.++|+++.|+++++.||.+||....+|..|+.++.-
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34667788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCcch---HhhhcCCC
Q psy6284 247 LNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 247 ~~~~~~a~~---~~~~~~~~ 263 (270)
+|++.+++. +.+-.+|-
T Consensus 162 ~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred cCcHHHHHHHHHhhhccCCC
Confidence 999998877 45555553
No 84
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.24 E-value=4e-11 Score=77.92 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV 200 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 200 (270)
..|..++..|+|++|+..|+++++..|+++.+++.+|.|+..+|++++|+..|++++..+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5699999999999999999999999999999999999999999999999999999999999875
No 85
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.21 E-value=4.4e-10 Score=97.39 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
...+-.+..++..|+++.|+..++..+...|+|+-.+..++.+++..++..+|++.+++++.++|+.....+++|.+|..
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 35677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|++.+|+..++..+.-+|+|+..|..|+.++.++|+-.++..
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH
Confidence 9999999999999999999999999999999999999876644
No 86
>KOG1173|consensus
Probab=99.18 E-value=2.4e-10 Score=100.36 Aligned_cols=76 Identities=20% Similarity=0.151 Sum_probs=40.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
+.|+|.++.+++.+++|+..++++|.+.|.++.+|-..|.+|..+|+++.|++.|.++|.++|+|..+...|+.+.
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555555555555555555555555555444443
No 87
>KOG1173|consensus
Probab=99.18 E-value=2.8e-10 Score=99.90 Aligned_cols=132 Identities=18% Similarity=0.199 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----C---CCHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-AVFFANRALCFLKMKNYVSAEADCTASLKLD----N---TYVKAYQ 204 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p---~~~~a~~ 204 (270)
....=.|..+...+++..|..+|.+|+.+.|.+ .. +..+|.+.+..+.|.+|+.+|++++..- + .....+.
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv-~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLV-LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh-hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 345667999999999999999999999999986 33 3347888889999999999999998321 1 2445689
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCcc
Q psy6284 205 RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHL 265 (270)
Q Consensus 205 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~ 265 (270)
++|.++.+++.+++|+..|+++|.+.|.+..++..++-++..+|++..|+. ..+..+|-.+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 999999999999999999999999999999999999999999999999988 6777777653
No 88
>KOG0624|consensus
Probab=99.17 E-value=1.8e-09 Score=89.97 Aligned_cols=124 Identities=19% Similarity=0.172 Sum_probs=111.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy6284 119 SDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198 (270)
Q Consensus 119 ~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 198 (270)
....++.+..+..-..+.++...++-.|++..|+.+.+..|++.|.+..++-.+|.||...|+...||.+...+-++..+
T Consensus 142 ~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D 221 (504)
T KOG0624|consen 142 VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD 221 (504)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Confidence 33445555666667778888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242 (270)
Q Consensus 199 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 242 (270)
+..++|.++..++..|+.+.++...+.||++||++...+-....
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 99999999999999999999999999999999999865544333
No 89
>KOG2003|consensus
Probab=99.17 E-value=1.2e-10 Score=99.99 Aligned_cols=124 Identities=17% Similarity=0.074 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+.++|+..|-.|++++|...|+++|.-+..-..+++|.|+.+-.+|++++|+.+|-+.-.+--++..+++.++.+|.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44567889999999999999999999999888888999999999999999999999999988888889999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+.+..+|++.+.++..+-|+++.+...|+.++-+-|+..+++.
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence 99999999999999999999999999999999999999988877
No 90
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.16 E-value=1.5e-09 Score=80.35 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQRR 206 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~~ 206 (270)
..++..|...++.|+|.+|++.|+......|.. ..+.+.++.+|++.+++++|+..+++-++++|.++ -++|.+
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 468888999999999999999999999888765 57999999999999999999999999999999875 489999
Q ss_pred HHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284 207 AAARRSLNH---------------FEDARKDILKVLALEPNNKQAEIE 239 (270)
Q Consensus 207 g~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~a~~~ 239 (270)
|.+++.+.. ...|...|+++++.-|++.-+...
T Consensus 91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA 138 (142)
T ss_pred HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence 999999887 899999999999999998876543
No 91
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.3e-09 Score=89.68 Aligned_cols=118 Identities=16% Similarity=0.115 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN---YVSAEADCTASLKLDNTYVKAYQRR 206 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~~ 206 (270)
.+++.|...|..|+..|++..|...|.+|+++.|+++..+..+|.+++...+ ..++...+++++.+||.+..+.+.+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 4577899999999999999999999999999999999999999999888654 6789999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
|..++..|+|.+|+..++..++..|.+..-...+.......
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARA 274 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999998877666666555443
No 92
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.15 E-value=1.4e-10 Score=97.78 Aligned_cols=133 Identities=19% Similarity=0.167 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
...+......+...++++++...+.++.... +.++..|..+|.++.+.|+.++|+.++++++.++|++..+...++.+
T Consensus 110 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 110 PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp --------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3445566778899999999999999977655 67889999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
+...|+++++.+.+....+..|+++..+..++.++..+|++.+|+. ..+..+|.+
T Consensus 190 li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 190 LIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999987 444445543
No 93
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.15 E-value=1.1e-09 Score=102.23 Aligned_cols=107 Identities=9% Similarity=-0.058 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
+.+......+..+++.+.+++|+..+++++..+|++..+++.+|.++.++|++++|+..|++++..+|++..++..+|.+
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~ 197 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQS 197 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQA 236 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a 236 (270)
+...|+.++|...|+++++..-+-...
T Consensus 198 l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 198 LTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999999999999999999987665554
No 94
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.14 E-value=6.4e-10 Score=89.40 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=112.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~ 215 (270)
......+...|+-+.+.....++....|.+..+....|......|+|.+|+..++++..++|+++++|.-+|.+|.+.|+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence 44577788889989999999998889999999998899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 216 FEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 216 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+++|...|.+++++.|+++.+..+++..+..-|++..+..
T Consensus 150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 150 FDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred hhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999877655
No 95
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.13 E-value=4.2e-10 Score=74.80 Aligned_cols=70 Identities=24% Similarity=0.330 Sum_probs=50.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284 173 ALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242 (270)
Q Consensus 173 a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 242 (270)
..+|+..+++++|+.++++++.++|+++.+++.+|.++..+|++.+|+++|+++++.+|+++.+....+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 3456677777777777777777777777777777777777777777777777777777777766665543
No 96
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.13 E-value=1.3e-09 Score=103.46 Aligned_cols=123 Identities=9% Similarity=-0.085 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
...+..+...+++|+|..|+..|.++++.+|.++.+...++.++...|++++|+..|++++.-+|....+...+|.++..
T Consensus 35 ~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 35 DTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999964444888888899999999999999994344455555555889999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+|++++|++.|+++++.+|+++.++..++.++...++..+++.
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~ 157 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLK 157 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHH
Confidence 9999999999999999999999999999888888888888777
No 97
>KOG4162|consensus
Probab=99.12 E-value=7.9e-10 Score=100.21 Aligned_cols=122 Identities=21% Similarity=0.106 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.|...+..+.+.++-++|..+..++-.++|..+..|+.+|.++...|.+.+|.+.|..++.+||+++.....+|.++...
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 35555666666666666666666666666666666666667766667777777777777777777666666667766666
Q ss_pred CCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 214 NHFEDARK--DILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 214 g~~~~A~~--~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|+..-|.. .+..++++||.++++|+.++.+..++|+..+|..
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHH
Confidence 66665555 6666667777777777777777666666665544
No 98
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.11 E-value=2.8e-09 Score=96.59 Aligned_cols=134 Identities=15% Similarity=0.090 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHhc--CC
Q psy6284 131 SAVYSKEQGNKLVKEGK---WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK--------NYVSAEADCTASLKL--DN 197 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~al~~--~p 197 (270)
.|..++.+|..++..++ +..|+.+|++|++++|++..++..++.++.... +...+.....+++.+ +|
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 46677888888887665 889999999999999999999999999886642 244566666676664 77
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCcc
Q psy6284 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHL 265 (270)
Q Consensus 198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~ 265 (270)
..+.+|..+|..+...|++++|...|++++.++| +..++..++.++...|++.+|+. +.+..+|..-
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 7889999999999999999999999999999999 58899999999999999999887 7777777643
No 99
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.11 E-value=6.9e-10 Score=96.54 Aligned_cols=95 Identities=21% Similarity=0.200 Sum_probs=87.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
+...|...+..++|++|+..|++++.++|++..+++.+|.++..+|++++|+.++++++.++|++..++..++.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcch---HhhhcCCC
Q psy6284 249 IPLSPIK---VDFLHNPY 263 (270)
Q Consensus 249 ~~~~a~~---~~~~~~~~ 263 (270)
++.+|+. ..+..+|.
T Consensus 85 ~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 85 EYQTAKAALEKGASLAPG 102 (356)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 9988877 44555554
No 100
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.11 E-value=6e-10 Score=87.24 Aligned_cols=114 Identities=21% Similarity=0.180 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g 207 (270)
.-++|..++++|+.|=..|-+.-|...|.+++.+.|.-+.+++.+|.-+...|+|+.|.+.|+.++++||.+--++.++|
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg 140 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 140 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284 208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 241 (270)
.+++--|++.-|.++|.+-.+-||+|+---..|=
T Consensus 141 i~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLY 174 (297)
T COG4785 141 IALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLY 174 (297)
T ss_pred eeeeecCchHhhHHHHHHHHhcCCCChHHHHHHH
Confidence 9999999999999999999999999985444333
No 101
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.11 E-value=2.7e-09 Score=101.89 Aligned_cols=126 Identities=13% Similarity=0.121 Sum_probs=116.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF 216 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 216 (270)
..-.++.-.|++++|+..|.+++..+|....++.++|.++...+++++|+..|++++.++|.++.+++.+|.++...|++
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 34566778899999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 217 EDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
++|+..++++++.+|++.. +..++.++...|++.+++. ..+..+|.
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999 9999999999999988877 44445554
No 102
>KOG0550|consensus
Probab=99.11 E-value=1.6e-10 Score=98.07 Aligned_cols=125 Identities=21% Similarity=0.182 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA------------VFFANRALCFLKMKNYVSAEADCTASLKLDNT 198 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 198 (270)
.++.++-+|.+++-..+.+.|+.+|+++|.++|+.. ..+-..|.-.++.|.+..|.++|..+|.++|+
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 467788899999999999999999999999999863 46888999999999999999999999999996
Q ss_pred C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 199 Y----VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 199 ~----~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+ .+.|.++|.+..++|+.++|+.+++.++++||....++...+.|+..+++..+++.
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 56799999999999999999999999999999999999999999999988877765
No 103
>KOG1128|consensus
Probab=99.10 E-value=3.1e-10 Score=102.33 Aligned_cols=122 Identities=11% Similarity=0.070 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.....|...+.+++|++|.++++..++++|-....|+++|.|.+++++++.|..+|.+++.++|++..+|.+++.+|..+
T Consensus 487 A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 487 AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 34445666778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++..+|...++++++.+-++...|.+...+..+.|+...++.
T Consensus 567 ~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 567 KKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 999999999999999999999999999999999999988877
No 104
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.08 E-value=8e-10 Score=86.00 Aligned_cols=115 Identities=11% Similarity=0.030 Sum_probs=98.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHc
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHD--AVFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRAAARRSL 213 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~ 213 (270)
.+.+|-.+.|..+...+...+...+.+ ..+++++|.++..++++++|+..|++++.+.|+ .+.+++++|.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 6 RNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc
Confidence 455666777888888887766666655 668899999999999999999999999998775 345899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-------HhCCCCCc
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAELNR-------KLNIPLSP 253 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~-------~~~~~~~a 253 (270)
|++++|+..|++++.++|.+..++..++.++. .+|++..+
T Consensus 86 g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A 132 (168)
T CHL00033 86 GEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIA 132 (168)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHH
Confidence 99999999999999999999999999999998 56665433
No 105
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.08 E-value=5.2e-10 Score=73.23 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=31.5
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284 178 KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241 (270)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 241 (270)
..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3444555555555555555555555555555555555555555555555555555444444443
No 106
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.08 E-value=5.1e-10 Score=73.29 Aligned_cols=67 Identities=33% Similarity=0.328 Sum_probs=62.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 142 LVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 142 ~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
+++.|+|++|+..|++++..+|++..+++.+|.|+++.|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4688999999999999999999999999999999999999999999999999999998888777665
No 107
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.07 E-value=1.3e-09 Score=74.66 Aligned_cols=88 Identities=28% Similarity=0.311 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
+++++|.++...|++++|+..+++++...|.+..+++.+|.++...+++++|++.|++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcch
Q psy6284 248 NIPLSPIK 255 (270)
Q Consensus 248 ~~~~~a~~ 255 (270)
|+...+..
T Consensus 82 ~~~~~a~~ 89 (100)
T cd00189 82 GKYEEALE 89 (100)
T ss_pred HhHHHHHH
Confidence 98777655
No 108
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.06 E-value=8.8e-10 Score=95.80 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---FANRALCFLKMKNYVSAEADCTASLKL 195 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~ 195 (270)
....+..+.+.|..++..|+|++|+..|+++|+++|++..+ |+|+|.||..+|++++|+.++++++.+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556788888999999999999999999999999998854 999999999999999999999999987
No 109
>PRK11906 transcriptional regulator; Provisional
Probab=99.05 E-value=4.8e-09 Score=91.37 Aligned_cols=129 Identities=7% Similarity=-0.119 Sum_probs=112.4
Q ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCCC
Q psy6284 135 SKEQGNKLVKEG---KWGEAIEKYNVAI---QTYPHDAVFFANRALCFLKM---------KNYVSAEADCTASLKLDNTY 199 (270)
Q Consensus 135 ~~~~g~~~~~~g---~~~~A~~~y~~al---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~ 199 (270)
++.+|...+.++ ..+.|+.+|.+|+ +++|....+|..+|.|+... .+-.+|.+..+++++++|.+
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 455666665554 4678999999999 99999999999999999875 23567899999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
+.+++.+|.++...++++.|...|++|+.++|+...+++..+.+....|+..++.. +.+..+|.
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 99999999999999999999999999999999999999999999999999888877 55666664
No 110
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.05 E-value=3e-09 Score=77.28 Aligned_cols=90 Identities=22% Similarity=0.150 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHH
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEIE 239 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~ 239 (270)
+..++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 6799999999999999999999999999999986 678999
Q ss_pred HHHHHHHhCCCCCcch
Q psy6284 240 LAELNRKLNIPLSPIK 255 (270)
Q Consensus 240 l~~~~~~~~~~~~a~~ 255 (270)
++.++..+|+..++..
T Consensus 82 ~~~~~~~~~~~~~A~~ 97 (119)
T TIGR02795 82 LGMSLQELGDKEKAKA 97 (119)
T ss_pred HHHHHHHhCChHHHHH
Confidence 9999999999988877
No 111
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.04 E-value=2.4e-09 Score=71.11 Aligned_cols=70 Identities=24% Similarity=0.366 Sum_probs=65.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
...+++.++|++|+..+++++.++|+++.++..+|.|+..+|++.+|+.+++++++..|++..+...++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 4678999999999999999999999999999999999999999999999999999999999888776654
No 112
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.04 E-value=1.5e-08 Score=82.57 Aligned_cols=111 Identities=16% Similarity=0.176 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRR 206 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~ 206 (270)
...++.+..+++.|+|..|...|...+...|+. +.++|=||.+++.+|+|++|...|..++.-.|++ +.+++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 348899999999999999999999999999986 6799999999999999999999999999988865 5689999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 243 (270)
|.+...+|+.++|...|+++++.-|+.+.+......+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~ 258 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL 258 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999887765544
No 113
>KOG2002|consensus
Probab=99.02 E-value=6.1e-09 Score=96.70 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
..++.++..|..+..+|+|++|-.+|.+++..+|++ ...++.+|..+++.|+++.|+.+|++++...|++.....-+|.
T Consensus 305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~ 384 (1018)
T KOG2002|consen 305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC 384 (1018)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 456779999999999999999999999999999998 7889999999999999999999999999999999999999999
Q ss_pred HHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 209 ARRSLN----HFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 209 ~~~~~g----~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
.|...+ .-+.|...+.++++..|.|.++|..++.++..
T Consensus 385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 998886 67889999999999999999999999998754
No 114
>KOG1129|consensus
Probab=99.02 E-value=8.4e-10 Score=91.35 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=101.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCC
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN---TYVKAYQRRAAARRSLNH 215 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~~g~~~~~~g~ 215 (270)
|.-||-.++.+.|+.+|++.|.+--.++.+++|+|+|.+.-++++-++..|.+++.... .-...||++|.+....|+
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 33456667788888888888888778889999999999999999999999999997643 457799999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284 216 FEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 216 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a 253 (270)
+.-|..+|+-||.-||++.+++++|+.+..+.|+-.++
T Consensus 411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 99999999999999999999999999999998887665
No 115
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.01 E-value=5.6e-09 Score=79.78 Aligned_cols=96 Identities=24% Similarity=0.217 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC--
Q psy6284 148 WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN----------YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH-- 215 (270)
Q Consensus 148 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~----------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-- 215 (270)
|+.|.+.+......+|.+++.+++=|.+++.+.+ +++|+.-|++||.++|+...|++.+|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999999888754 4678999999999999999999999999988765
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 216 ---------FEDARKDILKVLALEPNNKQAEIELAEL 243 (270)
Q Consensus 216 ---------~~~A~~~~~~al~~~p~~~~a~~~l~~~ 243 (270)
|++|..+|++|...+|+|...+..|..+
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 8899999999999999999998888766
No 116
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.01 E-value=3.2e-08 Score=75.02 Aligned_cols=127 Identities=16% Similarity=0.045 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HH
Q psy6284 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VK 201 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 201 (270)
....+...+......+..+++..+...+.+.+...|.. ..+.+.+|.+++..|++++|+..|+.++...|+. ..
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 34445566777777778888888888888888888887 5678888888888888888888888888876554 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+.+++|.++...|++++|+..++. +.-.+-.+.+...++.++...|+..++..
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 788888888888888888888865 33445566788888888888888777654
No 117
>KOG1308|consensus
Probab=99.00 E-value=3e-10 Score=94.43 Aligned_cols=120 Identities=28% Similarity=0.426 Sum_probs=107.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q psy6284 123 EEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKA 202 (270)
Q Consensus 123 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a 202 (270)
....+..+.+...+-.+..++..|.+++|+..|..+|.++|....+|..+|.++++++....|+.+|..++.++|+..+.
T Consensus 105 e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ 184 (377)
T KOG1308|consen 105 EITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKG 184 (377)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccc
Confidence 34456678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 203 YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243 (270)
Q Consensus 203 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 243 (270)
|-.+|.+...+|++++|..+|..+++++-+ ..+-..+..+
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kld~d-E~~~a~lKeV 224 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKLDYD-EANSATLKEV 224 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhcccc-HHHHHHHHHh
Confidence 999999999999999999999999998743 3333334444
No 118
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.00 E-value=2.4e-08 Score=82.21 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---FANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQR 205 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~ 205 (270)
+..++..|..++..|+|++|+..|++++...|..+.+ .+.+|.++++++++++|+..+++.+...|++ +.++|.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3457788999999999999999999999999988654 5999999999999999999999999999976 468999
Q ss_pred HHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q psy6284 206 RAAARRSLN---------------H---FEDARKDILKVLALEPNNK---QAEIELAEL 243 (270)
Q Consensus 206 ~g~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~---~a~~~l~~~ 243 (270)
+|.++..++ | ..+|+..|+..++.-|+.. .|...+..+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l 170 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFL 170 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH
Confidence 999875554 1 3578899999999999875 444444444
No 119
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.7e-09 Score=84.87 Aligned_cols=110 Identities=18% Similarity=0.081 Sum_probs=101.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q psy6284 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN---HFEDARKD 222 (270)
Q Consensus 146 g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g---~~~~A~~~ 222 (270)
.+.+.-+...+.-|..+|+|+.-|..+|.+|+.++++..|...|.+++++.|+++..+..+|.++.... .-.++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 346677778888899999999999999999999999999999999999999999999999999987543 46789999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 223 ILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 223 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|++++++||+|..+...|+......|++.+++.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 999999999999999999999999999999987
No 120
>KOG4162|consensus
Probab=98.99 E-value=1.2e-08 Score=92.82 Aligned_cols=106 Identities=24% Similarity=0.173 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHhcCCCCHHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA--DCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~~al~~~p~~~~a~~~~g 207 (270)
..+..++..|..+..+|++.+|...|..|+.++|+++.+...+|.|++..|+..-|.. ....++++||.++++||.+|
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG 761 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLG 761 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999998887777 99999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy6284 208 AARRSLNHFEDARKDILKVLALEPNNKQ 235 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 235 (270)
.++..+|+.++|.++|+.|+++++.+|-
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9999999999999999999999998864
No 121
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.97 E-value=1.5e-08 Score=96.40 Aligned_cols=122 Identities=11% Similarity=0.108 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+...|..+...|+|++|+..|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++..
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~ 181 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh
Confidence 3455568899999999999999999999999999999999999999999999999999999999986554 555666666
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.++..+|++.|+++++++|++..++..+..++..+|....+..
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 8888789999999999999999999999999999988766655
No 122
>KOG1156|consensus
Probab=98.97 E-value=5.7e-09 Score=93.16 Aligned_cols=122 Identities=14% Similarity=0.106 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.++.+....|..++|...+...+..|+..|.+++.....|+.+..+|+-++|...++.++..|+.+...|..+|.++..-
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 46777888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+|++|+++|+.|+.++|+|.+++.-++.+..+++++.--..
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999888888755443
No 123
>KOG3060|consensus
Probab=98.97 E-value=3.4e-08 Score=79.20 Aligned_cols=113 Identities=23% Similarity=0.185 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
++.+-.....+|+-.+||+....-++..+.|.++|..++.+|+..++|+.|.-|+++++-+.|.++-.+.++|.+++.+|
T Consensus 123 ~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 123 RKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 44555566777888899999999999999999999999999999999999999999999999999999999999998776
Q ss_pred ---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 215 ---HFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 215 ---~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
+++-|.++|.++++++|.+..++..+-.+-..+
T Consensus 203 g~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 203 GAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred hHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 677899999999999998888888776664444
No 124
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.97 E-value=1.6e-08 Score=79.00 Aligned_cols=87 Identities=16% Similarity=0.139 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 164 HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
....+++++|.++...|++++|+.+|++++.+.|+. ..+++.+|.++..+|++++|+..|.+++.++|++..++..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456789999999999999999999999999887753 57999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q psy6284 241 AELNRKLNIP 250 (270)
Q Consensus 241 ~~~~~~~~~~ 250 (270)
+.++..+|+.
T Consensus 113 g~~~~~~g~~ 122 (172)
T PRK02603 113 AVIYHKRGEK 122 (172)
T ss_pred HHHHHHcCCh
Confidence 9999988874
No 125
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.96 E-value=3.8e-08 Score=78.96 Aligned_cols=113 Identities=21% Similarity=0.200 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQR 205 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~ 205 (270)
+..++..|..++..|+|.+|+..|++.+...|.. ..+.+.+|.++++.+++.+|+..+++.+...|+++ .++|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 4578899999999999999999999999998875 57999999999999999999999999999999764 58999
Q ss_pred HHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHH---HHHHHHHHH
Q psy6284 206 RAAARRSLN-----------HFEDARKDILKVLALEPNNKQ---AEIELAELN 244 (270)
Q Consensus 206 ~g~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~---a~~~l~~~~ 244 (270)
+|.+++.+. ...+|+..|+..++.-|+++- |...+..+.
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~ 137 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR 137 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH
Confidence 999977653 345899999999999999864 444444443
No 126
>KOG3060|consensus
Probab=98.96 E-value=3.4e-08 Score=79.22 Aligned_cols=117 Identities=21% Similarity=0.150 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
.+-.|-.+-..|.|++|+++|+..|+-+|.+..++-..-.+...+|...+||....+-++.-+.+..||..++.+|...|
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 34457777888999999999999999999999999988888889999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284 215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPL 251 (270)
Q Consensus 215 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 251 (270)
+|++|.-+++.++-++|.++.....++.++.-+|...
T Consensus 169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999888743
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.95 E-value=1.6e-08 Score=76.67 Aligned_cols=95 Identities=17% Similarity=0.145 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
....+..|..++..|+|++|+..|++++...|+. ..+.+++|.+++.+|++++|+..++. +.-.+..+.++..+|.
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gd 126 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGD 126 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHH
Confidence 3456778999999999999999999999987665 46899999999999999999999966 3445556778899999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q psy6284 209 ARRSLNHFEDARKDILKVL 227 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al 227 (270)
++...|++++|+..|+++|
T Consensus 127 i~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999875
No 128
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=1.7e-08 Score=87.84 Aligned_cols=121 Identities=13% Similarity=0.058 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------------------------------------HHHHHHHHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-------------------------------------VFFANRALCFL 177 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-------------------------------------~~~~~~a~~~~ 177 (270)
..-+|..++..|++++|+..+.++++.+|.+. .++..+|.++.
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH
Confidence 34456666777777777777777776666554 24456677778
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhCCCCCc
Q psy6284 178 KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK----QAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~l~~~~~~~~~~~~a 253 (270)
.+|++++|+..+++++.++|++..++..+|.++...|++++|+..+++++...|.++ ..+..++.++...|++.++
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888888888888888888888888888888888888888877543 2455788888888888887
Q ss_pred ch
Q psy6284 254 IK 255 (270)
Q Consensus 254 ~~ 255 (270)
+.
T Consensus 206 ~~ 207 (355)
T cd05804 206 LA 207 (355)
T ss_pred HH
Confidence 77
No 129
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.93 E-value=4.9e-08 Score=71.01 Aligned_cols=95 Identities=20% Similarity=0.013 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRA 207 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g 207 (270)
..++.|..+-..|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++...|+ +......++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 56888999999999999999999999975444 568999999999999999999999999999887 888888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q psy6284 208 AARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~ 228 (270)
.++..+|++++|+..+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999988775
No 130
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.92 E-value=5.5e-08 Score=86.44 Aligned_cols=128 Identities=13% Similarity=0.043 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHHHH
Q psy6284 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV-KAYQRR 206 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~a~~~~ 206 (270)
+...+......|...+..|+|+.|.+...++.+..|+....+...|.+...+|+++.|...+.++.+..|++. .+....
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 3445667788999999999999999999999999998888889999999999999999999999999999875 466667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+.++...|+++.|++.++..++.+|+++.+...++.++...|+..++..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~ 208 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDD 208 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999999999999999876655
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.90 E-value=6.9e-08 Score=84.01 Aligned_cols=116 Identities=23% Similarity=0.145 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...+--.|..++..++..+|++.+++++.++|+.+.+..++|.++++.|++.+|+..+++.+..+|+++..|..+|.+|.
T Consensus 340 ~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~ 419 (484)
T COG4783 340 PYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
.+|+..+|...+...+.+.-.-..|...+..+..+.
T Consensus 420 ~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 420 ELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999988888888888877665
No 132
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.87 E-value=3.1e-08 Score=86.26 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=67.3
Q ss_pred hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 160 QTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKA---YQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 160 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
..+|+++.+++|+|.+|+.+|+|++|+.+|+++++++|++..+ ||++|.+|..+|++++|+++|++++++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999999999999855 999999999999999999999999998
No 133
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=7.8e-08 Score=79.68 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=104.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
...-+.|-...+|++||+.-.+...+.++. ...|+.+|..++...+++.|...+.+++..+|.+..|-..+|.+.
T Consensus 145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~ 224 (389)
T COG2956 145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence 344566667777888887777777776664 457889999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhCCCCCcch
Q psy6284 211 RSLNHFEDARKDILKVLALEPNN-KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
...|+|+.|++.++.+++.||+. +.+...|..|+..+|++.+...
T Consensus 225 ~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999987 6899999999999999887655
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.85 E-value=3.3e-08 Score=93.56 Aligned_cols=120 Identities=11% Similarity=-0.022 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH------------
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV------------ 200 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------ 200 (270)
..+......+...+++++|+.....+++..|+...+|+.+|.+++..+++..+... .++.+-+.+.
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence 35666788888999999999999999999999999999999999998888776555 5555544444
Q ss_pred -------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 201 -------KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 201 -------~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|++.+|.||..+|+.++|.+.|+++++++|+|+.+.++++..+... +..+|..
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 89999999999999999999999999999999999999999999988 7766655
No 135
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.84 E-value=6.2e-08 Score=86.14 Aligned_cols=124 Identities=9% Similarity=-0.060 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHhcCCCCH--HHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFF--ANRALCFLKMKNYVSAEADCTASLKLDNTYV--KAYQRR 206 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~--~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~~ 206 (270)
........|..+...|++++|+..+.++++..|++.... ..+....+..++...++..++++++.+|+++ .....+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 345566788999999999999999999999999987532 3344444556889999999999999999999 888899
Q ss_pred HHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 207 AAARRSLNHFEDARKDIL--KVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~--~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|.+++..|++++|.++|+ .+++.+|++..+. .++.++.++|+..++..
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEAAA 391 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHHHH
Confidence 999999999999999999 6888999887744 99999999999888765
No 136
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.80 E-value=4.2e-09 Score=72.05 Aligned_cols=76 Identities=28% Similarity=0.201 Sum_probs=68.8
Q ss_pred ccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 179 MKNYVSAEADCTASLKLDNT--YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 179 ~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+++++.|+..+++++..+|. +...++.+|.+++..|++++|+..+++ ++.+|.+......++.|+.++|++.+|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 68999999999999999995 567788899999999999999999999 99999999999999999999999988876
No 137
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.80 E-value=2.4e-07 Score=82.04 Aligned_cols=127 Identities=13% Similarity=0.030 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHhcCCCCHHHH-HH
Q psy6284 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANR-ALCFLKMKNYVSAEADCTASLKLDNTYVKAY-QR 205 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~-a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~-~~ 205 (270)
+...+...+..|...+-.|+|++|.+...++-+.. +++..++.+ +.+...+|+++.|...+.++.+.+|++..+. ..
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~ 158 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEIT 158 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 34456677788888888899999887777655433 335555555 4454888999999999999998888875443 44
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+..+...|++++|++.+++.++.+|+++.+...+..++...|+..++..
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 58888889999999999999999999999999999999888888777663
No 138
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.79 E-value=1.2e-07 Score=82.57 Aligned_cols=98 Identities=14% Similarity=-0.017 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV----KAYQRRAAA 209 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~~g~~ 209 (270)
.....|..+...|++++|+..+++++++.|+++.++..+|.++...|++++|+..+++++...|..+ ..++.+|.+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 4556788999999999999999999999999999999999999999999999999999999887432 356689999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC
Q psy6284 210 RRSLNHFEDARKDILKVLALEP 231 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p 231 (270)
+..+|++++|+..|++++...|
T Consensus 196 ~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 196 YLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999987777
No 139
>KOG0543|consensus
Probab=98.78 E-value=1.6e-07 Score=80.22 Aligned_cols=99 Identities=19% Similarity=0.250 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+.+.+.++.+.++|..|+...+++|.++|.|+.++|.+|.+++.+++|+.|+.+|+++++++|.|..+...+..+...
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999998888877
Q ss_pred cCCHHHH-HHHHHHHHhhCC
Q psy6284 213 LNHFEDA-RKDILKVLALEP 231 (270)
Q Consensus 213 ~g~~~~A-~~~~~~al~~~p 231 (270)
..++.+. .+.|...+..-+
T Consensus 338 ~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 6666654 677777766543
No 140
>KOG1128|consensus
Probab=98.77 E-value=8.8e-08 Score=86.83 Aligned_cols=126 Identities=18% Similarity=0.158 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH----------------------------HHHHHHHHHHcc
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF----------------------------FANRALCFLKMK 180 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~----------------------------~~~~a~~~~~~~ 180 (270)
.++...|-....+|...|+-.+|.....+-++ .|.++.. ...+|...+..+
T Consensus 421 ~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~ 499 (777)
T KOG1128|consen 421 FERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNK 499 (777)
T ss_pred HHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccch
Confidence 34444555666677777777777766666666 4444333 333344445568
Q ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 181 NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+|+++..+++..++++|-....||.+|.+...++++..|.++|..++.++|++..+|+++..++.++++..++..
T Consensus 500 ~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~ 574 (777)
T KOG1128|consen 500 DFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR 574 (777)
T ss_pred hHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999877755
No 141
>KOG1840|consensus
Probab=98.76 E-value=8.7e-08 Score=85.92 Aligned_cols=124 Identities=25% Similarity=0.283 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-------
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQT--------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD------- 196 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------- 196 (270)
+..+...|..|...++|.+|+..|++|+.+ +|.-..++.|+|.+|...|+|.+|..+|++|+.+.
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 445567899999999999999999999986 34446799999999999999999999999999763
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHhCCCCCcch
Q psy6284 197 -NTYVKAYQRRAAARRSLNHFEDARKDILKVLALE-----PNN---KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 197 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|.-...+...+.++..++++++|...+++++++- +++ ...+.+|+.++..+|++.+|..
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~ 388 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE 388 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence 2345678889999999999999999999998863 233 5788999999999999998866
No 142
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.76 E-value=1e-08 Score=69.02 Aligned_cols=64 Identities=17% Similarity=0.223 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKLD----N---TYVKAYQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
..++.++|.+|..+|++++|+..|++++.+. + ....+++++|.++..+|++++|++.|++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556666666666666666666666666441 1 12456667777777777777777777777654
No 143
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.74 E-value=1.6e-07 Score=68.38 Aligned_cols=89 Identities=17% Similarity=0.095 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRAAARRSLNHFEDARKDILKVLALEPN---NKQAEIEL 240 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l 240 (270)
.+.+++|.++-.+|+.++|+..|++++..... -..++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 57899999999999999999999999997543 3679999999999999999999999999999898 88999999
Q ss_pred HHHHHHhCCCCCcch
Q psy6284 241 AELNRKLNIPLSPIK 255 (270)
Q Consensus 241 ~~~~~~~~~~~~a~~ 255 (270)
+.++..+|+..+++.
T Consensus 82 Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 82 ALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHCCCHHHHHH
Confidence 999999999999887
No 144
>PRK15331 chaperone protein SicA; Provisional
Probab=98.73 E-value=5e-08 Score=73.90 Aligned_cols=98 Identities=11% Similarity=-0.099 Sum_probs=91.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy6284 158 AIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE 237 (270)
Q Consensus 158 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 237 (270)
...+.++.....+..|.-++..|++++|...|+-+..++|.++..++.+|.++..+++|++|+..|..|..++++|+...
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 34556667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcch
Q psy6284 238 IELAELNRKLNIPLSPIK 255 (270)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~ 255 (270)
...+.|+..+|+..+|..
T Consensus 109 f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred chHHHHHHHhCCHHHHHH
Confidence 999999999999988876
No 145
>KOG2002|consensus
Probab=98.73 E-value=1.9e-07 Score=87.09 Aligned_cols=117 Identities=19% Similarity=0.096 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-VKAYQRRA 207 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~~g 207 (270)
...+...++-+|-.|+|..+...+..++...-.. ...+|.+|-+|..+|+|++|..+|.+++..+|++ .-+++.+|
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Glg 349 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLG 349 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchh
Confidence 4456678999999999999999999998865443 4569999999999999999999999999999988 88999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
+.+...|+++.|..+|+++++.+|++......||.++...+
T Consensus 350 Qm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 350 QMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 99999999999999999999999999999999999998775
No 146
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.71 E-value=3.3e-07 Score=80.07 Aligned_cols=110 Identities=21% Similarity=0.104 Sum_probs=93.7
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy6284 143 VKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222 (270)
Q Consensus 143 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 222 (270)
-..++++.|+..+++..+.+|+ +...+|.+++..++..+|+..+.+++...|.+...+..-|..+...++++.|+..
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i 256 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI 256 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3456788999999888777764 5566788888888888999999999998898888888888889999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 223 ILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 223 ~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.++++.+.|++...|..|+.++..+|++.+|+.
T Consensus 257 Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 257 AKKAVELSPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999888765
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=98.70 E-value=3e-07 Score=80.35 Aligned_cols=98 Identities=19% Similarity=0.061 Sum_probs=90.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
..+-.+|++.-.+|++++|.|+.++..+|.++...++++.|+..|++++.++|+++.+|+..|.+....|+.++|++.++
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHH
Q psy6284 225 KVLALEPNNKQAEIELAE 242 (270)
Q Consensus 225 ~al~~~p~~~~a~~~l~~ 242 (270)
+|++++|.-..+-.....
T Consensus 397 ~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred HHhccCchhhHHHHHHHH
Confidence 999999987665544333
No 148
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.69 E-value=2.6e-07 Score=76.79 Aligned_cols=90 Identities=12% Similarity=-0.044 Sum_probs=81.6
Q ss_pred HHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q psy6284 166 AVFFANRALCF-LKMKNYVSAEADCTASLKLDNTY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEI 238 (270)
Q Consensus 166 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~ 238 (270)
....|..|..+ +..++|++|+..|++.+...|++ +.++|.+|.+|+..|++++|+..|+++++..|++ +.++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46788888886 66799999999999999999987 5899999999999999999999999999998874 78888
Q ss_pred HHHHHHHHhCCCCCcch
Q psy6284 239 ELAELNRKLNIPLSPIK 255 (270)
Q Consensus 239 ~l~~~~~~~~~~~~a~~ 255 (270)
.++.++..+|+..++..
T Consensus 222 klg~~~~~~g~~~~A~~ 238 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKA 238 (263)
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 89999999999888877
No 149
>KOG1174|consensus
Probab=98.69 E-value=1.4e-07 Score=80.57 Aligned_cols=124 Identities=11% Similarity=0.023 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----------------------------------HHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV----------------------------------FFANRALCFL 177 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~----------------------------------~~~~~a~~~~ 177 (270)
...+.+.|.++|..|++.+|+..|.++..++|++.. -|+--+...+
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~ 311 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY 311 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence 345667899999999999999999999999998643 2334444455
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 178 KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+++..|+..-+++|..+|.+..++...|.++..+|+.++|+-.|+.|..+.|.....+..|-.++...|...+++.
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 678889999999999999999999999999999999999999999999999999999999999999988888887765
No 150
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.67 E-value=3.6e-06 Score=64.81 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQ-TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAA 208 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~ 208 (270)
..-....|+.+...|++.+|...|.+++. +..+++..+..++.+.+..+++..|...++++.+.+|. .+...+.+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 34566789999999999999999999987 56788999999999999999999999999999999985 5678888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a 253 (270)
++..+|.+++|...|+.++..-|+ +++....+..+.++|...++
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHH
Confidence 999999999999999999999876 45556667777788866554
No 151
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.65 E-value=7.9e-07 Score=78.78 Aligned_cols=120 Identities=12% Similarity=0.034 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
.......+..+...|+.++|.....++++ .|.++.+....+.+ ..+++++++..+++.++..|+++..++.+|.++.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 33455678999999999999999999999 45566554444444 4599999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+++++|.+.|+++++.+|++.. +..++.++.++|+..++..
T Consensus 340 ~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~ 382 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAA 382 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999766 4579999999999888766
No 152
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.65 E-value=1e-07 Score=64.07 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY---P----HDAVFFANRALCFLKMKNYVSAEADCTASLKL 195 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~---p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 195 (270)
.+..+...|..++..|+|++|+.+|++++++. + ....++.++|.|+..+|++++|+..+++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45578899999999999999999999999762 2 22568999999999999999999999999975
No 153
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.64 E-value=5.5e-07 Score=74.77 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----HHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-----VKAYQR 205 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~a~~~ 205 (270)
....+.+.|..|+..|-++.|...|....+...--..+.-.+..+|....++++|++..++..++.+.. ...|..
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 345678899999999999999999988876554556788889999999999999999999999998854 346777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCccc
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHLT 266 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~ 266 (270)
+|+.+....+++.|+..+.++++.||....|-..++.+....|++..++. +..-+||..++
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 89999999999999999999999999999999999999999999999888 77777776543
No 154
>KOG4648|consensus
Probab=98.64 E-value=3.5e-08 Score=82.43 Aligned_cols=95 Identities=17% Similarity=0.119 Sum_probs=87.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
.-..|.-|+++|.|++||.||.+++.++|.|+..+-++|.+|+++..|..|..+++.|+.+|.....||...+.+...+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcch---HhhhcCCC
Q psy6284 249 IPLSPIK---VDFLHNPY 263 (270)
Q Consensus 249 ~~~~a~~---~~~~~~~~ 263 (270)
+..++-. ..+..+|.
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 9887755 56666664
No 155
>KOG2003|consensus
Probab=98.64 E-value=6.9e-07 Score=77.33 Aligned_cols=125 Identities=16% Similarity=0.026 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.++.+.+.++.|-...+..+||+.|.++.++-|+++.++.-+|.+|-+-|+-.+|.+++-.....-|.+....-.+|.-|
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY 636 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence 45666777777777777788888888888888888888888888888888888888888777778888888777788777
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
....-+++|+.+|+++--+.|+.......++.|.++.|++..++.
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 777778999999999999999999999999999999999998876
No 156
>KOG2076|consensus
Probab=98.64 E-value=6.8e-07 Score=82.83 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...++..|..|-++|+.++|+.....|--++|.+...|..++....++|.+.+|.-+|.+||..+|.+.+..++++..|.
T Consensus 173 ~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~ 252 (895)
T KOG2076|consen 173 PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQ 252 (895)
T ss_pred hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCC
Q psy6284 212 SLNHFEDARKDILKVLALEP 231 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p 231 (270)
++|+...|+..|.+.+.++|
T Consensus 253 ~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 253 KTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred HhChHHHHHHHHHHHHhhCC
Confidence 99999999999999999999
No 157
>KOG0495|consensus
Probab=98.61 E-value=8.6e-07 Score=79.80 Aligned_cols=130 Identities=18% Similarity=0.080 Sum_probs=110.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---------------------------------HHHHHHHHHHHccC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV---------------------------------FFANRALCFLKMKN 181 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~---------------------------------~~~~~a~~~~~~~~ 181 (270)
|..-+...+..|+...|...+..+++.+|++.+ +|+--+.....++.
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 455566777888888888888888888887633 45556666667899
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---Hhh
Q psy6284 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDF 258 (270)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~ 258 (270)
.++|+..|+++++..|++.+.|..+|+++..+++.+.|.+.|...++.-|+....|..|+.+..+.|+...|=. +..
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988766533 667
Q ss_pred hcCCCc
Q psy6284 259 LHNPYH 264 (270)
Q Consensus 259 ~~~~~~ 264 (270)
+.||-+
T Consensus 747 lkNPk~ 752 (913)
T KOG0495|consen 747 LKNPKN 752 (913)
T ss_pred hcCCCc
Confidence 777743
No 158
>KOG1127|consensus
Probab=98.61 E-value=1e-07 Score=88.99 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH------------------------
Q psy6284 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK------------------------ 201 (270)
Q Consensus 146 g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------------ 201 (270)
++...|+..|-+++.+++....+|..+|..|....+...|..+|++|+++|+....
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 34555666666666666666666666666655555555555555555555553321
Q ss_pred ------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 202 ------------AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 202 ------------a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|..+|..|...+++-+|+..|+.+++.+|.|-..|..++.++-..|.+..+++
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHH
Confidence 244466666666666666666666666666666666666666666666666555
No 159
>KOG1840|consensus
Probab=98.60 E-value=8.7e-07 Score=79.62 Aligned_cols=126 Identities=21% Similarity=0.174 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP--------HDAVFFANRALCFLKMKNYVSAEADCTASLKLD----- 196 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----- 196 (270)
..+..+.+.|..|.+.|+|++|..++++|+++.. .-...+.+++.++..++++++|+..+++++++-
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 3467788999999999999999999999998732 235689999999999999999999999999763
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 197 ---NTYVKAYQRRAAARRSLNHFEDARKDILKVLALE--------PNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 197 ---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+.-.+.+.++|.+|+.+|++.+|.+.|++|+.+. +........++..+.+++++.++..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~ 430 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQ 430 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHH
Confidence 2336789999999999999999999999999875 3345677888888888888877655
No 160
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=1e-06 Score=76.98 Aligned_cols=103 Identities=19% Similarity=0.143 Sum_probs=91.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~ 215 (270)
.-.+..+...++-.+|+..+.+++...|.+..++...|..++..++++.|+..+++++.+.|+...+|+.+|.+|..+|+
T Consensus 204 ~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 204 VLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC
Confidence 34577777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHH
Q psy6284 216 FEDARKDILKVLALEPNNKQAEI 238 (270)
Q Consensus 216 ~~~A~~~~~~al~~~p~~~~a~~ 238 (270)
++.|+..++.+-..-+.+.....
T Consensus 284 ~e~ALlaLNs~Pm~~~~~k~~~~ 306 (395)
T PF09295_consen 284 FENALLALNSCPMLTYKDKYKLK 306 (395)
T ss_pred HHHHHHHHhcCcCCCCccchhhh
Confidence 99999999877655445444433
No 161
>KOG1156|consensus
Probab=98.59 E-value=3.8e-07 Score=81.76 Aligned_cols=123 Identities=17% Similarity=0.129 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
+.+-.+|..+...|+-++|..+-..++..++....+|.-+|+++..-++|++|+.+|+.|+.++|+|...+.-++.....
T Consensus 42 eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 42 ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34555688888889999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+++++.....-.+.+++.|.+..-|...+.....+|++..+..
T Consensus 122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888888888887766
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.58 E-value=1.1e-06 Score=79.83 Aligned_cols=88 Identities=9% Similarity=-0.019 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 147 KWGEAIEKYNVAIQT--YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 147 ~~~~A~~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
+...+.....+++.+ +|.++.+|.-+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|++.|+
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345666667776664 777888999999999999999999999999999999 57899999999999999999999999
Q ss_pred HHHhhCCCCHH
Q psy6284 225 KVLALEPNNKQ 235 (270)
Q Consensus 225 ~al~~~p~~~~ 235 (270)
+|+.++|.++.
T Consensus 478 ~A~~L~P~~pt 488 (517)
T PRK10153 478 TAFNLRPGENT 488 (517)
T ss_pred HHHhcCCCCch
Confidence 99999999985
No 163
>KOG1129|consensus
Probab=98.57 E-value=4.1e-07 Score=75.69 Aligned_cols=108 Identities=15% Similarity=0.060 Sum_probs=62.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF 216 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 216 (270)
-...+|-+..+...|+..|.+.++..|.++..+...|.++..++++++|++.|..+++++|.|.++.-..|.-|+--++.
T Consensus 261 lLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~P 340 (478)
T KOG1129|consen 261 LLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNP 340 (478)
T ss_pred HHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCCh
Confidence 34444444445555555555555555666666666666666666666666666666666666665555555555555555
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 217 EDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
+.|+.+|.+.|++.-.+++.+.+++.|-
T Consensus 341 E~AlryYRRiLqmG~~speLf~NigLCC 368 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQSPELFCNIGLCC 368 (478)
T ss_pred HHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence 5555555555555555555555555553
No 164
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.51 E-value=1.9e-06 Score=72.82 Aligned_cols=119 Identities=17% Similarity=0.071 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK--NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
-.-..+.+.++++.|.+.++..-+.+.+........|.+.+..| .+.+|...|++.....+.++..+..+|.++..+|
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 34667889999999999999988887776665555666666666 5999999999988887889999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 215 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+|++|.+.+++++..+|+++.+..++..+...+|+..+...
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 99999999999999999999999999999999999855444
No 165
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.51 E-value=3.8e-06 Score=76.14 Aligned_cols=45 Identities=18% Similarity=0.249 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCF 176 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~ 176 (270)
...+-.+|..+++.|++++|...|...|+.+|++...|..+..|.
T Consensus 38 ~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 38 LAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 345566799999999999999999999999998876666666555
No 166
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.51 E-value=3e-07 Score=54.51 Aligned_cols=42 Identities=31% Similarity=0.404 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 242 (270)
.+++.+|.+|..+|++++|++.|+++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467777777777777777777777777777777777777664
No 167
>KOG1174|consensus
Probab=98.50 E-value=1.3e-06 Score=74.88 Aligned_cols=111 Identities=13% Similarity=0.081 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..|+-.|..+|..++|+.|+.+-.++|..+|.+..++...|.+++.+++.++|+-.|+.|..+.|.....|-.+-.+|
T Consensus 299 ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsY 378 (564)
T KOG1174|consen 299 TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSY 378 (564)
T ss_pred chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELA 241 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 241 (270)
...|.+.+|...-+.+++.-|.+..+...++
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 8888877777666666666666666666554
No 168
>KOG1310|consensus
Probab=98.50 E-value=5e-07 Score=79.40 Aligned_cols=112 Identities=25% Similarity=0.250 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHH
Q psy6284 126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM---KNYVSAEADCTASLKLDNTYVKA 202 (270)
Q Consensus 126 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~a 202 (270)
.+-.+.++.++..|+..|-.+.+..|+..|.+++...|+...++.|+|.++++. ++.-.|+.+|..++.++|...+|
T Consensus 368 ~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~ka 447 (758)
T KOG1310|consen 368 YELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKA 447 (758)
T ss_pred hhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHH
Confidence 344567788999999999999999999999999999999999999999999885 57778999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy6284 203 YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE 237 (270)
Q Consensus 203 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 237 (270)
||+++.++..++++.+|+++...+....|.+....
T Consensus 448 h~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~ 482 (758)
T KOG1310|consen 448 HFRLARALNELTRYLEALSCHWALQMSFPTDVARQ 482 (758)
T ss_pred HHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhh
Confidence 99999999999999999999988888888665443
No 169
>KOG0495|consensus
Probab=98.45 E-value=3.3e-06 Score=76.18 Aligned_cols=124 Identities=12% Similarity=-0.004 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...|...++...-.++.++|+..++++|+..|+...+|..+|.++-.+++.+.|...|..-++..|+.+..|..++.+-.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 34455566677778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..|+.-.|...+.++..-||.+...|.....+..+.|+..++..
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999866643
No 170
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.44 E-value=4.7e-06 Score=79.31 Aligned_cols=115 Identities=10% Similarity=0.113 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------------
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--------------- 195 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------- 195 (270)
+-..++.+|.+|-+.|++++|...|+++|+++|+++.+..|+|..|... ++++|+..+.+|+..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~ 193 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWS 193 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 3457889999999999999999999999999999999999999999999 999999888888754
Q ss_pred -----CCCCHHHHH--------HHH------------HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 196 -----DNTYVKAYQ--------RRA------------AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 196 -----~p~~~~a~~--------~~g------------~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
+|++...++ .++ ..|...++|++++..++.+|+++|.|..+...+..|+..
T Consensus 194 k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~ 269 (906)
T PRK14720 194 KLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE 269 (906)
T ss_pred HHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 444333211 234 677888999999999999999999999999999999873
No 171
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.44 E-value=1.9e-05 Score=63.28 Aligned_cols=119 Identities=20% Similarity=0.128 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhcCCC
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA---VFFANRALCFLKMKN-----------YVSAEADCTASLKLDNT 198 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~ 198 (270)
...+..|..+++.|+|.+|+..|++.++..|.++ .+++.+|.+++.+.. ..+|+..|+..+...|+
T Consensus 43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence 3567789999999999999999999999999874 589999999877642 45899999999999997
Q ss_pred CHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCCC
Q psy6284 199 YVKA-----------------YQRRAAARRSLNHFEDARKDILKVLALEPNNK---QAEIELAELNRKLNIPL 251 (270)
Q Consensus 199 ~~~a-----------------~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l~~~~~~~~~~~ 251 (270)
+..+ -+..|..|.+.|.+..|+..|+.+++--|+.+ .+...+..++.++|...
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 7432 34478889999999999999999999999876 56777777888888765
No 172
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.44 E-value=1.7e-05 Score=65.41 Aligned_cols=122 Identities=13% Similarity=0.033 Sum_probs=101.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccC------------------HHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKN------------------YVSAEADCTAS 192 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~------------------~~~A~~~~~~a 192 (270)
..+..|..+++.++|++|+..|++.++..|++ +.+++.+|.++..++. ..+|+..|++.
T Consensus 71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l 150 (243)
T PRK10866 71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL 150 (243)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999987 4589999999766541 35788999999
Q ss_pred HhcCCCCHH---H--------------HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhCCCCC
Q psy6284 193 LKLDNTYVK---A--------------YQRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEIELAELNRKLNIPLS 252 (270)
Q Consensus 193 l~~~p~~~~---a--------------~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~~~~~~~~~~~ 252 (270)
+...|++.- | -+..|.-|.+.|.+..|+.-|+.+++--|+. .++...+..++..+|...+
T Consensus 151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 999997642 1 2346777999999999999999999998875 5788888888999998877
Q ss_pred cch
Q psy6284 253 PIK 255 (270)
Q Consensus 253 a~~ 255 (270)
+-.
T Consensus 231 a~~ 233 (243)
T PRK10866 231 ADK 233 (243)
T ss_pred HHH
Confidence 654
No 173
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.43 E-value=4.4e-07 Score=50.49 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 233 (270)
.+|+++|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 466777777777777777777777777777753
No 174
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.42 E-value=2.7e-07 Score=51.32 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=18.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy6284 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDAR 220 (270)
Q Consensus 189 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~ 220 (270)
|+++|+++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555555555555555555555555554
No 175
>KOG1127|consensus
Probab=98.42 E-value=8.9e-07 Score=82.93 Aligned_cols=114 Identities=13% Similarity=0.086 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..|..+|..+.+.+++..|+..|+.++..+|.+..+|..+|.+|...|++..|+..|+++..++|.+.-+.|..+...+.
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 34556788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
+|+|.+|+..+...+..-.....+...++.++.+
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIR 676 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8888888888888887766666666666666544
No 176
>KOG4555|consensus
Probab=98.39 E-value=4.9e-06 Score=60.34 Aligned_cols=83 Identities=25% Similarity=0.179 Sum_probs=73.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHH
Q psy6284 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN----KQAEIELAELNRK 246 (270)
Q Consensus 171 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~----~~a~~~l~~~~~~ 246 (270)
..|.+...-|+.+.|++.|.+++.+.|..+.+|.++++++.-+|+.++|+.++++++++.-+. -.++...+.++..
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 457777889999999999999999999999999999999999999999999999999996543 2677788889999
Q ss_pred hCCCCCc
Q psy6284 247 LNIPLSP 253 (270)
Q Consensus 247 ~~~~~~a 253 (270)
+|+...+
T Consensus 128 ~g~dd~A 134 (175)
T KOG4555|consen 128 LGNDDAA 134 (175)
T ss_pred hCchHHH
Confidence 9886544
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.37 E-value=4.2e-07 Score=50.54 Aligned_cols=34 Identities=32% Similarity=0.405 Sum_probs=31.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHH
Q psy6284 154 KYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA 187 (270)
Q Consensus 154 ~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~ 187 (270)
+|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4899999999999999999999999999999863
No 178
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.37 E-value=3.6e-05 Score=62.49 Aligned_cols=79 Identities=20% Similarity=0.173 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---HHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK---AYQR 205 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~ 205 (270)
+..+++.|...++.|+|++|++.|+......|.. ..+.+.++.++++.+++++|+...++-+.+.|.++. ++|.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3456666777777777777777777766665544 356666777777777777777777777766665432 3444
Q ss_pred HHHHH
Q psy6284 206 RAAAR 210 (270)
Q Consensus 206 ~g~~~ 210 (270)
+|.++
T Consensus 114 kgLs~ 118 (254)
T COG4105 114 KGLSY 118 (254)
T ss_pred HHHHH
Confidence 44443
No 179
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.35 E-value=1.4e-06 Score=48.31 Aligned_cols=34 Identities=32% Similarity=0.434 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 233 (270)
+.+++.+|.++..+|++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567778888888888888888888888888765
No 180
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.33 E-value=1.6e-06 Score=51.40 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
.+++.+|.+|..+|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467777888888888888888888888888888888777764
No 181
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.29 E-value=8.1e-06 Score=69.00 Aligned_cols=103 Identities=16% Similarity=0.188 Sum_probs=85.8
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284 138 QGNKLVKEG--KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215 (270)
Q Consensus 138 ~g~~~~~~g--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~ 215 (270)
.+...+..| .+.+|...|++..+..+.++..++.+|.|++.+|+|++|...+.+++..+|.++.++.+++.+...+|+
T Consensus 171 ~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 171 EAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence 344444444 699999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 216 F-EDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 216 ~-~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
. +.+.+.+.+.-..+|+++-.....
T Consensus 251 ~~~~~~~~l~qL~~~~p~h~~~~~~~ 276 (290)
T PF04733_consen 251 PTEAAERYLSQLKQSNPNHPLVKDLA 276 (290)
T ss_dssp TCHHHHHHHHHCHHHTTTSHHHHHHH
T ss_pred ChhHHHHHHHHHHHhCCCChHHHHHH
Confidence 8 667788888888999998766544
No 182
>KOG4642|consensus
Probab=98.29 E-value=1.3e-06 Score=69.71 Aligned_cols=85 Identities=22% Similarity=0.212 Sum_probs=80.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 171 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
.-|.+++.-..|..|+.+|.++|.++|..+..|.+++.+++++.+++.+..+..++++++|+...+.+.++.+......+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcch
Q psy6284 251 LSPIK 255 (270)
Q Consensus 251 ~~a~~ 255 (270)
.+++.
T Consensus 95 ~eaI~ 99 (284)
T KOG4642|consen 95 DEAIK 99 (284)
T ss_pred cHHHH
Confidence 99887
No 183
>KOG4234|consensus
Probab=98.28 E-value=7.7e-06 Score=63.74 Aligned_cols=73 Identities=27% Similarity=0.348 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAY 203 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 203 (270)
+...+.++|.++.+.+.++.||....++|+++|.+..++..+|.+|-++..|++|+.+|.+++.++|....+.
T Consensus 133 rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear 205 (271)
T KOG4234|consen 133 RSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAR 205 (271)
T ss_pred HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHH
Confidence 3456778999999999999999999999999999999999999999999999999999999999999876543
No 184
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.27 E-value=1.6e-06 Score=48.21 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT 198 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 198 (270)
.+|+++|.++..++++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777777777777777777777777775
No 185
>KOG0546|consensus
Probab=98.24 E-value=1.4e-06 Score=73.16 Aligned_cols=124 Identities=27% Similarity=0.293 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----------C--------CHHHHHHHHHHHHHccCHHHHHHHH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP-----------H--------DAVFFANRALCFLKMKNYVSAEADC 189 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p-----------~--------~~~~~~~~a~~~~~~~~~~~A~~~~ 189 (270)
...+...++.|+..|+.++|..|...|.+++.... + -...+.|++.|-++++.+..|+..+
T Consensus 219 ~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~ 298 (372)
T KOG0546|consen 219 LEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRT 298 (372)
T ss_pred hhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceecc
Confidence 34455677889999999999999999999987522 1 1246888999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCC
Q psy6284 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLS 252 (270)
Q Consensus 190 ~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~ 252 (270)
..++..++...+++|++++++..+.++++|++++..+...+|++..+...+..+..+...+..
T Consensus 299 ~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~ 361 (372)
T KOG0546|consen 299 NEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNR 361 (372)
T ss_pred ccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888776655443
No 186
>KOG2376|consensus
Probab=98.24 E-value=1.1e-05 Score=71.89 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.++..-+.+-+.|+|++|+....+.+...|++..+....-.|+.+++.|++|+...++-....-.+. ..|..|.|.+++
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHc
Confidence 4555667778888999999999999998888888888888888888888888854443332222222 226788888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch--Hhh
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK--VDF 258 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~--~~~ 258 (270)
+..++|+.+++ -+++.+..+....+.+..+++++.+++. +++
T Consensus 93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L 136 (652)
T KOG2376|consen 93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHL 136 (652)
T ss_pred ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 88888888887 5667777778888888888888888776 555
No 187
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.23 E-value=1.3e-05 Score=65.59 Aligned_cols=87 Identities=22% Similarity=0.166 Sum_probs=81.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEIELAE 242 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l~~ 242 (270)
.|+.|.-+++.|+|..|...|..-+...|++ +.|+|.+|.+++.+|++++|...|..+++-.|.+ +++...|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 8999999999999999999999999999975 6799999999999999999999999999998876 578999999
Q ss_pred HHHHhCCCCCcch
Q psy6284 243 LNRKLNIPLSPIK 255 (270)
Q Consensus 243 ~~~~~~~~~~a~~ 255 (270)
++..+|+..+|..
T Consensus 224 ~~~~l~~~d~A~a 236 (262)
T COG1729 224 SLGRLGNTDEACA 236 (262)
T ss_pred HHHHhcCHHHHHH
Confidence 9999999988876
No 188
>KOG1130|consensus
Probab=98.21 E-value=9.8e-07 Score=75.57 Aligned_cols=129 Identities=17% Similarity=0.137 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC----
Q psy6284 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLD---- 196 (270)
Q Consensus 127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---- 196 (270)
++......+-+.||.||-.|+|++||..-+.-|.+.... -.++.|+|.||.-+|+++.|++.|.+.+.+.
T Consensus 190 Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg 269 (639)
T KOG1130|consen 190 DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG 269 (639)
T ss_pred hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc
Confidence 344556667789999999999999999988877765443 3589999999999999999999999877543
Q ss_pred C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 197 N--TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 197 p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
. --....|.+|.+|.-+.++++|+.++++-|.+..+ ...+...|+.++..+|+..+++.
T Consensus 270 ~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 270 NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence 2 24567899999999999999999999998877543 45677778888888888777765
No 189
>KOG3785|consensus
Probab=98.20 E-value=3.6e-05 Score=65.05 Aligned_cols=113 Identities=19% Similarity=0.198 Sum_probs=77.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--------------cCC-------
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK--------------LDN------- 197 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--------------~~p------- 197 (270)
|.++|..|+|++|+..|+-+...+.-+..++.|+|.|++-+|.|.+|.....++-+ ++.
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 88999999999999999999887666778888899888888888777655444321 111
Q ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284 198 -----TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPL 251 (270)
Q Consensus 198 -----~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 251 (270)
+...-.+.+|.+.+..-.|.+|++.|.++|.-+|+.....-.++.|+.++.=+.
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence 111223345555555556677777777777767666666666666666665443
No 190
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.20 E-value=0.00012 Score=55.32 Aligned_cols=95 Identities=20% Similarity=0.115 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----------------------AVFFANRALCFLKMKNYVSAEADCTA 191 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~ 191 (270)
.+...|......++...++..+.+++.+...+ ..+...++..+...|++++|+..+.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34555777788899999999999999875322 23677778888899999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 192 SLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 192 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
++..+|.+..+|..+-.++...|+..+|++.|+++.+
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988753
No 191
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.20 E-value=3.6e-05 Score=69.94 Aligned_cols=123 Identities=15% Similarity=0.036 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..++-.+..+-..|++++|+.+.++||+..|..++.|+..|.++-+.|++.+|..+++.+-.+|+.+.-.-...+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 34566788888899999999999999999999999999999999999999999999999999999888888888888999
Q ss_pred cCCHHHHHHHHHHHHhhC--CCC-----HHHHHH--HHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALE--PNN-----KQAEIE--LAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~--p~~-----~~a~~~--l~~~~~~~~~~~~a~~ 255 (270)
.|+.++|.+.+..-.+-+ |.. .+.|+. .+.++.+.|++-.|++
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999988776654 211 234544 4556677777766665
No 192
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=3.8e-06 Score=66.27 Aligned_cols=99 Identities=13% Similarity=0.108 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 245 (270)
...++.+|..|-.+|-..-|.-+|.+++.+.|+-+.++..+|.-+...|+|+.|.+.|...+++||.+.-+..+.+....
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 45678888999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HhCCCCCcch---HhhhcCCCc
Q psy6284 246 KLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 246 ~~~~~~~a~~---~~~~~~~~~ 264 (270)
--|.+.-|-. ..+-.+|..
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~D 166 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPND 166 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCC
Confidence 7777765544 444555543
No 193
>KOG2376|consensus
Probab=98.13 E-value=8.6e-05 Score=66.48 Aligned_cols=125 Identities=15% Similarity=0.076 Sum_probs=96.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------------------
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN------------------ 197 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------------------ 197 (270)
++++.++|+.+..++|+..++ ..++.+..+...+|..++++++|++|+..|+..++.+.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 688999999999999999998 45667777888899999999999999999998865422
Q ss_pred -------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCC-------HHHHHHHHHHHHHhCC
Q psy6284 198 -------------TYVKAYQRRAAARRSLNHFEDARKDILKVLALE--------PNN-------KQAEIELAELNRKLNI 249 (270)
Q Consensus 198 -------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~-------~~a~~~l~~~~~~~~~ 249 (270)
+....+|+.|+++...|+|.+|++.+++++++. -++ ..+...++-++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 244578999999999999999999999994332 111 2355667777888899
Q ss_pred CCCcch---HhhhcCCC
Q psy6284 250 PLSPIK---VDFLHNPY 263 (270)
Q Consensus 250 ~~~a~~---~~~~~~~~ 263 (270)
..++.. ..+..+|.
T Consensus 240 t~ea~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPA 256 (652)
T ss_pred hHHHHHHHHHHHHhcCC
Confidence 888866 34444444
No 194
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.12 E-value=0.00025 Score=50.59 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh---
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH------------DAVFFANRALCFLKMKNYVSAEADCTASLK--- 194 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--- 194 (270)
..+......|...+..|-|++|...|.++++.... +..++..++-++..+|+|++++...+++|.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 34445567788889999999999999999986322 245788899999999999999998888884
Q ss_pred ----cCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 195 ----LDNT----YVKAYQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 195 ----~~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
++.+ +..+.+++|.++..+|+.++|+..|+.+-+.
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4444 3567899999999999999999999988653
No 195
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.12 E-value=2.2e-05 Score=66.35 Aligned_cols=103 Identities=18% Similarity=0.226 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----
Q psy6284 131 SAVYSKEQGNKLVKE-GKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNT----- 198 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~-g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----- 198 (270)
.+..+.+.|..+... |++++|+.+|.+|+++...+ ..++...|.++..+++|++|+..|+++....-.
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 356677888888888 99999999999999974322 357889999999999999999999999875321
Q ss_pred -CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284 199 -YV-KAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 199 -~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 233 (270)
+. ..++..+.|++..||+-.|...|++....+|..
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 22 346778889999999999999999999999954
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.10 E-value=7.4e-05 Score=55.54 Aligned_cols=85 Identities=16% Similarity=-0.026 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q psy6284 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK---QAEI 238 (270)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~ 238 (270)
.+..++..|...+..|+|++|+..++.+....|. ...+.+.+|.+|+..+++++|+..+++-++++|+++ -+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 3567899999999999999999999999998874 467999999999999999999999999999999886 5777
Q ss_pred HHHHHHHHhCC
Q psy6284 239 ELAELNRKLNI 249 (270)
Q Consensus 239 ~l~~~~~~~~~ 249 (270)
..+.+...+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 77877776543
No 197
>KOG4340|consensus
Probab=98.10 E-value=2.9e-05 Score=64.22 Aligned_cols=122 Identities=15% Similarity=-0.004 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH----------Hh---------
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTAS----------LK--------- 194 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~--------- 194 (270)
.+.-.|.+|+...+|..|..+|.+.-...|......+.-|..+++.+.+..|+...... ++
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse 125 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE 125 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence 45567888888889999999998888888888777777777777777776665433221 11
Q ss_pred -----------cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 195 -----------LDN--TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 195 -----------~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.-| +......+.|+++++.|+++.|++-|+.+++..--++-..++++.++..-|++.++++
T Consensus 126 ~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred ccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 123 3456777889999999999999999999999999999999999999999999988877
No 198
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00026 Score=58.59 Aligned_cols=119 Identities=21% Similarity=0.188 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------------
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT----------------------- 190 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~----------------------- 190 (270)
.-...+......|++.+|...|..++...|.+..+...++.||+..|+.+.|...+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 345668888999999999999999999999999999999999999999977643332
Q ss_pred -----------HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhCCCCC
Q psy6284 191 -----------ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP--NNKQAEIELAELNRKLNIPLS 252 (270)
Q Consensus 191 -----------~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~~~~~~ 252 (270)
+.+..+|++..+-+.+|..+...|+.++|.+.+-..++.|- ++..++..+-.+....|....
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 23344788888999999999999999999998888888765 456788888888877775443
No 199
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.08 E-value=9.8e-06 Score=44.81 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTY 199 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (270)
.+++.+|.+++.+|++++|+.+|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345556666666666666666666666666543
No 200
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.06 E-value=3.3e-05 Score=65.21 Aligned_cols=125 Identities=20% Similarity=0.128 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCC--C--
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH--D----AVFFANRALCFLKM-KNYVSAEADCTASLKLDN--T-- 198 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~--~----~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p--~-- 198 (270)
..+..+.+.+.. ++..++.+|+.+|++|+++.-. + ..++.++|.+|... +++++|+..|.+|+.+.. +
T Consensus 73 ~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 73 EAAKAYEEAANC-YKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp HHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 344445555555 5556999999999999987322 2 45899999999998 999999999999997632 1
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHH---HHHHHHHHHHhCCCCCcch
Q psy6284 199 --YVKAYQRRAAARRSLNHFEDARKDILKVLALEPN----NKQA---EIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 199 --~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a---~~~l~~~~~~~~~~~~a~~ 255 (270)
....+...|.++..+|+|++|++.|+++....-+ ...+ +.....|+...|+...+-.
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2456778899999999999999999999875322 2223 2334455555666655443
No 201
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.03 E-value=3.9e-05 Score=47.01 Aligned_cols=47 Identities=26% Similarity=0.335 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
..+|.+|.+++++|+|++|+..++.+|+++|+|.++......+..++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i 48 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKI 48 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999998888776543
No 202
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.00 E-value=0.00061 Score=58.44 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHH
Q psy6284 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN-TYVKAYQR 205 (270)
Q Consensus 127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~ 205 (270)
.+...+......|-.-+..|+|.+|.+...++-+-.+.-..+|..-+.+--.+|+++.|-.+..++-+..+ +...+...
T Consensus 79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~lt 158 (400)
T COG3071 79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELT 158 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHH
Confidence 45566777888899999999999999999998877777777888888888999999999999999999944 45668888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++..+...|+++.|.....++++..|.++.+......++..+|+..+-..
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~ 208 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLA 208 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999999999999999998755443
No 203
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.99 E-value=0.0003 Score=55.43 Aligned_cols=120 Identities=26% Similarity=0.252 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRAL-CFLKMKNYVSAEADCTASLKLDN---TYVKAYQRRAAA 209 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~~g~~ 209 (270)
.+...|......+++..|+..+.+++...+.+.......+. ++...++++.|+..+.+++..+| .....++..+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL 176 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH
Confidence 34445555555556666666666666655555444444444 56666666666666666655554 344445555555
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhCCCCCc
Q psy6284 210 RRSLNHFEDARKDILKVLALEPN-NKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~~~~~~a 253 (270)
+...++++.|+..+.+++...|. ...+...++.++...+...++
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 221 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA 221 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence 55566666666666666666666 455555555555555543333
No 204
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.95 E-value=1.8e-05 Score=43.74 Aligned_cols=33 Identities=30% Similarity=0.452 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 233 (270)
.+|+.+|.++..+|++++|+..|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 467778888888888888888888888887743
No 205
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.88 E-value=6.5e-05 Score=57.79 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH----------FEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~----------~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
|+.|.+.++.....+|.+..++++.|.++..+.+ +++|+.-|+.||.++|+...|+..++.++..++..
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999988754 57789999999999999999999999999887653
No 206
>KOG1130|consensus
Probab=97.87 E-value=3.5e-05 Score=66.31 Aligned_cols=118 Identities=16% Similarity=0.218 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKL------DNTYVK 201 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~ 201 (270)
+..+-..|..+++.|++...+..|+.|+..--.+ ..+|.-+|.+|+.+++|++|+++-..-|.+ .-.-.+
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAK 96 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAK 96 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccc
Confidence 4556677999999999999999999999987665 458999999999999999999876554433 235577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCC
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNI 249 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~ 249 (270)
+.-++|..+.-+|.|++|+.++.+-|.+..+ ...|+++|+.++..-|+
T Consensus 97 ssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk 150 (639)
T KOG1130|consen 97 SSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGK 150 (639)
T ss_pred ccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccc
Confidence 8889999999999999999999988876542 45788889998876665
No 207
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.83 E-value=0.00068 Score=53.37 Aligned_cols=113 Identities=25% Similarity=0.225 Sum_probs=96.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCH
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYP---HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT-YVKAYQRRAAARRSLNHF 216 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~ 216 (270)
.++..|+++.|+..|.+++...| .....+..++..+...++++.|+..+.+++...+. ...++..++.++...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 78999999999999999988777 45667777777788899999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284 217 EDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a 253 (270)
+.|+..+..++...|........++..+...+...++
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 9999999999999999777777777776644433333
No 208
>KOG2796|consensus
Probab=97.81 E-value=0.00036 Score=56.89 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=96.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCC--CCHHHHHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLK----LDN--TYVKAYQRRA 207 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p--~~~~a~~~~g 207 (270)
.+...+.+.-.|+|.-.+..|.+.++.+ |.++.+...+|.+.++.||.+.|...|+++-+ ++. .+.-.+-+.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3445677777889999999999999987 66788888888888888988888888885443 222 3445677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.++...+++.+|...|.+++..||.++.+-++.+.|+.-+|+...|++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH
Confidence 788888888888888888888888888888888888888888877777
No 209
>KOG0551|consensus
Probab=97.80 E-value=9.7e-05 Score=61.89 Aligned_cols=88 Identities=25% Similarity=0.248 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT----YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 242 (270)
.-|-.-|+-|++-++|..|+..|.+.|+.... +...|.++|-|.+.+|+|..|+.++.++++++|.+..++..=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 45666789999999999999999999987543 46689999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCcc
Q psy6284 243 LNRKLNIPLSPI 254 (270)
Q Consensus 243 ~~~~~~~~~~a~ 254 (270)
|+..+..+..+.
T Consensus 162 c~~eLe~~~~a~ 173 (390)
T KOG0551|consen 162 CLLELERFAEAV 173 (390)
T ss_pred HHHHHHHHHHHH
Confidence 999888755543
No 210
>PRK10941 hypothetical protein; Provisional
Probab=97.80 E-value=0.00035 Score=58.20 Aligned_cols=78 Identities=15% Similarity=0.119 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 245 (270)
...|+=.+|...++++.|+.+.+.++.++|+++.-+.-+|.+|.++|++..|+.+++..++..|+++.+......+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHS 260 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 566777888889999999999999999999999888889999999999999999999999999999888776666543
No 211
>KOG4507|consensus
Probab=97.79 E-value=0.00018 Score=64.61 Aligned_cols=109 Identities=17% Similarity=0.091 Sum_probs=98.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDA-VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF 216 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 216 (270)
.|....-.|+...|+.++..|+...|... ....++|.+.++-+-...|-..+.+++.+....+-.++..|.++..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 34444567999999999999999988754 46889999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 217 EDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
+.|++.|.+|++++|+++.....|..+.++
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c~ 722 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRCM 722 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 999999999999999999999999888774
No 212
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.75 E-value=0.0012 Score=65.28 Aligned_cols=114 Identities=7% Similarity=-0.089 Sum_probs=51.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCC
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLKL--DNTYVKAYQRRAAARRSLNH 215 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~ 215 (270)
...|.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|+..|.+.... .| +...|..+..++...|+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCC
Confidence 344555555555555555554443 223344444444555555555555555444433 22 23344444444444444
Q ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCCCCc
Q psy6284 216 FEDARKDILKVLALE-PNNKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 216 ~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~~~~~~a 253 (270)
+++|.+.|....+.. +-+...+..+..++.+.|+..++
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA 703 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 444444444444332 12333444444444444444433
No 213
>KOG3824|consensus
Probab=97.74 E-value=0.00018 Score=59.88 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
...|......+....+.|+.++|...|..|+.+.|.++.++...|......++.-+|-++|-+|+.++|.+.+|+.+++.
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 33444555667788999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred HH
Q psy6284 209 AR 210 (270)
Q Consensus 209 ~~ 210 (270)
..
T Consensus 193 T~ 194 (472)
T KOG3824|consen 193 TT 194 (472)
T ss_pred cc
Confidence 53
No 214
>KOG2053|consensus
Probab=97.70 E-value=0.00057 Score=64.04 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=95.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~ 218 (270)
-......++|.+|+....+.++..|+..-+....|..+.++|++++|..+++..-...+++...+-.+-.+|..++++++
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhH
Confidence 44556778899999999999999999999999999999999999999977777777778888888889999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 219 ARKDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
|...|++++..+|. .+....+=.++.+.+.+
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 99999999999999 77777777777666554
No 215
>KOG4340|consensus
Probab=97.70 E-value=9.7e-05 Score=61.18 Aligned_cols=94 Identities=24% Similarity=0.323 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCC--------
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL----DNT-------- 198 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~-------- 198 (270)
.|....+.|...|+.|+|+.|+..|+.|++....++.+-+|+|+|+++.+++..|+....+.+.. .|.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~te 222 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTE 222 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceec
Confidence 46678889999999999999999999999999999999999999999999999999988887743 231
Q ss_pred --------C---------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 199 --------Y---------VKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 199 --------~---------~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
| ..|+...+-++++.++++.|.+.+.
T Consensus 223 giDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 223 GIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred cCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 1 2477778889999999999988764
No 216
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.69 E-value=0.00047 Score=65.73 Aligned_cols=114 Identities=14% Similarity=0.042 Sum_probs=78.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q psy6284 140 NKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFE 217 (270)
Q Consensus 140 ~~~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~ 217 (270)
..+.+.|++++|...|+...+..+- +...|..+..++.+.|++++|.+.+++. ...| +...|..+..++...|+++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcH
Confidence 3344455555555555544432221 2235666666777777777777766543 2233 4556888888888889999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 218 DARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 218 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|...+++.+.++|++...+..+..++.+.|+..++..
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence 99999999999999998899999999999999887766
No 217
>KOG3785|consensus
Probab=97.69 E-value=0.00049 Score=58.41 Aligned_cols=105 Identities=17% Similarity=0.170 Sum_probs=81.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYPHDA-VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDA 219 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A 219 (270)
.+....||.-|+..++-.+..+.... ..-.-+|.|++++|+|++|+..|.-+..-+..+.+.+.++|.+++-+|.|.+|
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 45677899999999888776654433 45556899999999999999999999887778889999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 220 RKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 220 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
...-.+| |.++--...+-.+-.++++
T Consensus 111 ~~~~~ka----~k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 111 KSIAEKA----PKTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHhhC----CCChHHHHHHHHHHHHhCc
Confidence 9877665 5555444444444444444
No 218
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.68 E-value=0.002 Score=49.98 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=95.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCCHHHH
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK-LDNTYVKAYQRRAAARRSLNHFEDA 219 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~~g~~~~~~g~~~~A 219 (270)
...+.=|.+.+++...+.++.-|.. .-.+.+|.....+|++.+|...|++++. +..++...++.++.+.+..+++.+|
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 3344456677777777777777665 4577899999999999999999999985 6778999999999999999999999
Q ss_pred HHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 220 RKDILKVLALEPN--NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 220 ~~~~~~al~~~p~--~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
...+++..+.+|. .+.....++.++..+|.+..+..
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aes 181 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAES 181 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHH
Confidence 9999999999996 46777888899999999886654
No 219
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.65 E-value=0.0022 Score=63.43 Aligned_cols=120 Identities=8% Similarity=-0.068 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh----cCCCCHHHHHHHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLK----LDNTYVKAYQRRAAA 209 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~----~~p~~~~a~~~~g~~ 209 (270)
+......|.+.|++++|+..|.+..+.. .-+...|..+..++.+.|++++|.+.+.+... +.| +...|..+-.+
T Consensus 510 ynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~a 588 (1060)
T PLN03218 510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHH
Confidence 3344455666666666666666654431 12345566666666666666666666666654 233 34556666666
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 210 RRSLNHFEDARKDILKVLALE-PNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|.+.|++++|.+.|+...+.+ +.+...+..+...+.+.|+..+++.
T Consensus 589 y~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~ 635 (1060)
T PLN03218 589 CANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHH
Confidence 667777777777777666665 3455666666666666666665554
No 220
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.0027 Score=49.56 Aligned_cols=101 Identities=14% Similarity=0.018 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
.....+.+..++..|++++|+..++.++....+. ..+-.++|.+.+.++.+++|+..++..-.-. ..+..--.+|.
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGD 167 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhh
Confidence 3456778899999999999999999999654333 4578889999999999999998765433211 12233566899
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~~ 233 (270)
++...|+-++|+..|++++..+++.
T Consensus 168 ill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 168 ILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHcCchHHHHHHHHHHHHccCCh
Confidence 9999999999999999999998433
No 221
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.61 E-value=0.00012 Score=40.41 Aligned_cols=32 Identities=16% Similarity=0.195 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT 198 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 198 (270)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35566666666666666666666666666653
No 222
>KOG3364|consensus
Probab=97.60 E-value=0.0024 Score=46.75 Aligned_cols=82 Identities=17% Similarity=0.122 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHccC---HHHHHHHHHHHHh-cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 166 AVFFANRALCFLKMKN---YVSAEADCTASLK-LDN-TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~---~~~A~~~~~~al~-~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
....+++|.++.+..+ ..+.+.+++..++ -.| ......|.+|..++++++|+.|+.++..+|+.+|+|.+|....
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 4567888888877654 5678899999996 444 3567889999999999999999999999999999999999988
Q ss_pred HHHHHHh
Q psy6284 241 AELNRKL 247 (270)
Q Consensus 241 ~~~~~~~ 247 (270)
..+..++
T Consensus 112 ~~ied~i 118 (149)
T KOG3364|consen 112 ETIEDKI 118 (149)
T ss_pred HHHHHHH
Confidence 8877665
No 223
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.59 E-value=0.0014 Score=62.43 Aligned_cols=116 Identities=11% Similarity=-0.028 Sum_probs=78.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-NTYVKAYQRRAAARRSLNH 215 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~ 215 (270)
.....|.+.|++++|...|++. .+.+...|..+...|.+.|++++|+..|++..... ..+...+..+..++...|+
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m---~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 3456677788888888877653 34566777777788888888888888887776532 2244566666777777777
Q ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 216 FEDARKDILKVLALE-PNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 216 ~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+++|.+.+...++.. +.+..++..|...+.+.|+..+|..
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 777777777776665 4556666666666666666655544
No 224
>KOG2471|consensus
Probab=97.56 E-value=0.00025 Score=62.43 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVA-IQTYPH--------DAVFFANRALCFLKMKNYVSAEADCTASLKL------- 195 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~a-l~~~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 195 (270)
+..+.-+.+.+|-.|+|.+|.+.+... +...|. .+..++|+|.++++++.|..+...|.+|+..
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~ 319 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN 319 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc
Confidence 445666788899999999999887553 122222 3457899999999999999999999999951
Q ss_pred --CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 196 --DN---------TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 196 --~p---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
.| ......|+.|..|...|+.-.|.++|.++...-..|+..|..+++|-
T Consensus 320 g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 320 GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECC 379 (696)
T ss_pred cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 12 34568999999999999999999999999999999999999999984
No 225
>KOG2796|consensus
Probab=97.56 E-value=0.00059 Score=55.68 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh----C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQT----Y--PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~----~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g 207 (270)
.....|...++.||.+.|-.+|+..-+. + .....+..|.+.+|+-.++|.+|...+.+++..||.++.+-.+.|
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence 3456788999999999999999855432 1 234568889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284 208 AARRSLNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~p~~ 233 (270)
.|+.-+|+..+|++.++.++.+.|..
T Consensus 294 LcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 99999999999999999999999974
No 226
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.55 E-value=0.0018 Score=54.63 Aligned_cols=113 Identities=14% Similarity=0.018 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK-MKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~ 215 (270)
...+...+.+..+.|...|.+|++..+....+|...|..-+. .++.+.|...|+.+++..|.+...|......+..+++
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d 85 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc
Confidence 334444455557777788888875555566777777777555 4555558888888888888888888777777778888
Q ss_pred HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCC
Q psy6284 216 FEDARKDILKVLALEPNNK---QAEIELAELNRKLNI 249 (270)
Q Consensus 216 ~~~A~~~~~~al~~~p~~~---~a~~~l~~~~~~~~~ 249 (270)
.+.|...|++++..-|... .+|........+.|+
T Consensus 86 ~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 86 INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence 8888888888877766554 455555555555554
No 227
>KOG0376|consensus
Probab=97.54 E-value=3.9e-05 Score=67.21 Aligned_cols=87 Identities=23% Similarity=0.205 Sum_probs=80.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
+-+-|.-.+.-++|+.|+..|.++|+++|+++..+-.++.++...+++-.|+.++.++++++|....++...+.+...++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcch
Q psy6284 249 IPLSPIK 255 (270)
Q Consensus 249 ~~~~a~~ 255 (270)
.+.++..
T Consensus 87 ~~~~A~~ 93 (476)
T KOG0376|consen 87 EFKKALL 93 (476)
T ss_pred HHHHHHH
Confidence 9888766
No 228
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.54 E-value=0.0015 Score=46.22 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=75.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccC-----------HHHHHHHHHHHHhcCCCCHHHH
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDA---VFFANRALCFLKMKN-----------YVSAEADCTASLKLDNTYVKAY 203 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~-----------~~~A~~~~~~al~~~p~~~~a~ 203 (270)
++..++.+|++-+|++..+..+...+.+. .++..-|.++..+.. +-.+++++.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46788999999999999999999988775 566777777766533 3458999999999999998888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 204 QRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 204 ~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
|.+|.-+-....|++++.-.+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 88888777777788888888887765
No 229
>KOG3081|consensus
Probab=97.53 E-value=0.0053 Score=50.28 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=71.0
Q ss_pred HHHHHHHHHHc----cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 169 FANRALCFLKM----KNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 169 ~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
..-+|.++.++ ..+..|.-.|++.-.-.|..+......+.|+..+|+|++|...++.+|.-++++++...++..+-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA 251 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 33355555543 35778888888888767778888888999999999999999999999999999999999999998
Q ss_pred HHhCCCCCcch
Q psy6284 245 RKLNIPLSPIK 255 (270)
Q Consensus 245 ~~~~~~~~a~~ 255 (270)
..+|...+...
T Consensus 252 ~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 252 LHLGKDAEVTE 262 (299)
T ss_pred HHhCCChHHHH
Confidence 88998855544
No 230
>PLN03077 Protein ECB2; Provisional
Probab=97.52 E-value=0.0016 Score=63.66 Aligned_cols=112 Identities=13% Similarity=0.072 Sum_probs=66.5
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q psy6284 142 LVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDA 219 (270)
Q Consensus 142 ~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A 219 (270)
+.+.|++++|..+|+...+..+- +...|..+..++.+.|++++|.+.+++. .+.|+ ...|..+-.++...|+.+.+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHH
Confidence 33444444444444444322111 2234555555555666666666555543 23332 34455554455556666666
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 220 RKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 220 ~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
....+++++++|++...+..+..++...|+..++..
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence 666677788899999999999999888888877765
No 231
>KOG0545|consensus
Probab=97.50 E-value=0.00052 Score=55.37 Aligned_cols=90 Identities=9% Similarity=0.055 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKL--------DNTY----------VKAYQRRAAARRSLNHFEDARKDILKVL 227 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~----------~~a~~~~g~~~~~~g~~~~A~~~~~~al 227 (270)
..++-..|+-++++|+|.+|...|+.|+.. .|.. ...+.++++|+...|+|-++++.....|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 357888999999999999999999998732 3443 3478899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 228 ALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 228 ~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+|+|..|++..+.++...=|..+|-.
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~ 285 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKA 285 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence 9999999999999999988777766654
No 232
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.48 E-value=0.0041 Score=53.51 Aligned_cols=118 Identities=15% Similarity=0.067 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.....+..+...|++++|.+....+++..-+.- +... .-.+..++...=+...++.++..|+++..++.+|..+++.
T Consensus 265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~ 341 (400)
T COG3071 265 LVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKN 341 (400)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHh
Confidence 344557777889999999999999998754433 2222 2234678889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+.|.+|...|+.+++..|+ ...+..++.++.++|++..+..
T Consensus 342 ~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 342 KLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred hHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999765 4567789999999999887755
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.47 E-value=0.0014 Score=59.29 Aligned_cols=100 Identities=22% Similarity=0.156 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH----DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV-KAYQ 204 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~a~~ 204 (270)
..+.-++..|..+...|+.++|+..|++++..... ...+++.+|.|+..+.+|++|..++.+..+.+..+. -..|
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y 344 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAY 344 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHH
Confidence 34666788999999999999999999998853322 245899999999999999999999999998776532 2344
Q ss_pred HHHHHHHHcCCH-------HHHHHHHHHHHhh
Q psy6284 205 RRAAARRSLNHF-------EDARKDILKVLAL 229 (270)
Q Consensus 205 ~~g~~~~~~g~~-------~~A~~~~~~al~~ 229 (270)
..|.|+..+|+. ++|.+.|.++-.+
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 458888899999 8888888777554
No 234
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.46 E-value=0.00027 Score=38.51 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
+++.+|.++..+|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666777777777777777777777776665
No 235
>KOG4151|consensus
Probab=97.45 E-value=0.00081 Score=62.38 Aligned_cols=117 Identities=30% Similarity=0.488 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKM--KNYVSAEADCTASLKLDNTYVKA 202 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~a 202 (270)
+-.+...++.|+.+|+.++|..|.-.|..++.+.|.+ .....+.+.|++.+ ++|..++..|+-++...|...++
T Consensus 50 l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~ 129 (748)
T KOG4151|consen 50 LSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKA 129 (748)
T ss_pred HHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHH
Confidence 4456678899999999999999999999999998843 56788888888764 68999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284 203 YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245 (270)
Q Consensus 203 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 245 (270)
++.++.+|..++.++-|++++.-....+|.+..+.....++..
T Consensus 130 Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ 172 (748)
T KOG4151|consen 130 LLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG 172 (748)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999777664444433
No 236
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.45 E-value=0.00076 Score=41.34 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
+.++.+|..++++|+|++|...++.+++++|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4578889999999999999999999999999998876655443
No 237
>KOG3204|consensus
Probab=97.41 E-value=0.00013 Score=56.14 Aligned_cols=52 Identities=17% Similarity=0.328 Sum_probs=45.9
Q ss_pred eEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCC
Q psy6284 16 IWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHH 79 (270)
Q Consensus 16 ~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~ 79 (270)
.-.++|+.|+.+||+|+.||+.+. .|..|+|+.|+++.++|.-+..+.|..+
T Consensus 6 ~~~vidg~~hllGrlAa~vaK~ll------------~g~kvvvvr~E~i~isg~f~r~k~~lrk 57 (197)
T KOG3204|consen 6 KLVVIDGRGHLLGRLAAIVAKQLL------------LGRKVVVVRCEEINISGNFYRNKLFLRK 57 (197)
T ss_pred EEeeccchhhhhhhHHHHHHHHHh------------cCCeEEEEEEeEEEEecceecchHHHhh
Confidence 447999999999999999999999 8999999999999999998776645443
No 238
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.37 E-value=0.0051 Score=60.38 Aligned_cols=121 Identities=11% Similarity=-0.029 Sum_probs=95.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-----AVFFANRALCFLKMKNYVSAEADCTASLKLDNT------YVKAY 203 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~ 203 (270)
....|..++..|++++|...+.+++...+.. ..+...+|.++...|++++|...+++++..... ...++
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~ 534 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSL 534 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHH
Confidence 3446788899999999999999999865543 246788999999999999999999999975332 13467
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 204 QRRAAARRSLNHFEDARKDILKVLALEPN--------NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 204 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+|.++...|++++|...+.+++.+-.. ...+...++.++...|+..++..
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 78899999999999999999999886321 22345567778888888877755
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.33 E-value=0.0023 Score=56.76 Aligned_cols=59 Identities=17% Similarity=0.060 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAAARRSLNHFEDARKDILKV 226 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~a 226 (270)
+...+|.|..++|+.++|+..++..++..|. +...++++-.++..++.|.++...+.+.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444555555555555555555555554442 3345555555555555555555555443
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.33 E-value=0.00048 Score=38.63 Aligned_cols=27 Identities=22% Similarity=0.183 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
++.++|.+|..+|++++|++.|+++|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667777777777777777776443
No 241
>KOG2610|consensus
Probab=97.32 E-value=0.0056 Score=51.80 Aligned_cols=122 Identities=13% Similarity=0.053 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHH---HHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-DNTYVK---AYQRRAAA 209 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~---a~~~~g~~ 209 (270)
..-..+...+-+|++-+|.....+.|+-.|.+..++...-.+++.+|+.......+++++.. +|+-+- .+-.++..
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 34455677788999999999999999999999988888888888999999999999999976 766544 34445666
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+...|-|++|.+.-.+++++||.|.-+...++.++..-+...++..
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH
Confidence 7789999999999999999999999999999999888777766544
No 242
>KOG3824|consensus
Probab=97.32 E-value=0.001 Score=55.45 Aligned_cols=73 Identities=21% Similarity=0.109 Sum_probs=65.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243 (270)
Q Consensus 171 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 243 (270)
+.|.-..+.|+.+.|...|+.|+.++|+++.++..+|......++.-+|-++|.+||.++|.|.+|..+....
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3344446789999999999999999999999999999999999999999999999999999999998877654
No 243
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.32 E-value=0.0004 Score=36.84 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
+++.+|.++..++++++|+..|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4556666666666666666666666666554
No 244
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.31 E-value=0.0048 Score=60.57 Aligned_cols=122 Identities=12% Similarity=-0.001 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--------C
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNT--------Y 199 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~ 199 (270)
.....|..+...|++++|...+.+++...... ..++.++|.+++..|++++|...+++++.+... .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 34567888899999999999999999764321 346778899999999999999999999875221 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPN-----NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
...+..+|.++...|++++|...+.+++.+... ...++..++.+....|++..+..
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 633 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARR 633 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 334567889999999999999999999876332 24555667778888888766654
No 245
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.29 E-value=0.0021 Score=55.69 Aligned_cols=92 Identities=17% Similarity=0.338 Sum_probs=78.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------C----------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPH--------D----------AVFFANRALCFLKMKNYVSAEADCTASLKLD 196 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~--------~----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 196 (270)
....|..+|++++|..|+-.|..+|++... . ..+-.-+..||+++++.+.|+...-+.|-++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 456688889999999999999999987432 1 1245668999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284 197 NTYVKAYQRRAAARRSLNHFEDARKDILKV 226 (270)
Q Consensus 197 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 226 (270)
|.++.-|++.|.+...+.+|.+|-..+--+
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999997766544
No 246
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.28 E-value=0.0024 Score=43.97 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCC
Q psy6284 185 AEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN--KQAEIELAELNRKLNIP 250 (270)
Q Consensus 185 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~~~~ 250 (270)
.+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+|++ ..+...+-.+...+|..
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 3455667777777777777777777777777777777777777777654 66777777776666653
No 247
>KOG4814|consensus
Probab=97.26 E-value=0.0039 Score=56.77 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g 207 (270)
.+.+.+...|+..+|..+++.|...+..-|.+ .....+++.||+.+.+.+.|.+.+++|-+.+|.++-..+..-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 46678889999999999999999999987765 467889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh
Q psy6284 208 AARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~ 229 (270)
++...-|.-++|+....+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999998876554
No 248
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.23 E-value=0.00069 Score=54.10 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=48.0
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 176 FLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 176 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
..+.++.+.|.+.|.+++.+-|.+...|+++|....+.|+++.|.+.|++.++++|++.......
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~k 69 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALK 69 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhh
Confidence 34556777777777888888887777888888777778888888888888888887776544433
No 249
>PLN03077 Protein ECB2; Provisional
Probab=97.22 E-value=0.0039 Score=60.94 Aligned_cols=111 Identities=9% Similarity=-0.012 Sum_probs=61.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHH
Q psy6284 140 NKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--DNTYVKAYQRRAAARRSLNHFE 217 (270)
Q Consensus 140 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~ 217 (270)
..|.+.|++++|...|+.. +.+...|..+...|.+.|+.++|+..|++.... .|+ ...+..+-.++.+.|.++
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVT 606 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHH
Confidence 4555666666666666553 345556666666666666666666666665542 232 233444444555666666
Q ss_pred HHHHHHHHHHhhCC--CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 218 DARKDILKVLALEP--NNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 218 ~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+|.+.|+...+..+ -+...+..+..++.+.|...+|..
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~ 646 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYN 646 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHH
Confidence 66666665553221 123455556666666666555544
No 250
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.22 E-value=0.00068 Score=36.84 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLKLDNTY 199 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (270)
+++++|.|+..+|++++|+..+++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56677777777777777777777777776653
No 251
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.22 E-value=0.0036 Score=51.07 Aligned_cols=79 Identities=20% Similarity=-0.005 Sum_probs=68.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HH
Q psy6284 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA---EI 238 (270)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a---~~ 238 (270)
.+.-+++-|...+..|++++|+..|+.+....|. ..++...++.++++.+++++|+..+.+-+++.|+++.+ .+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 3568999999999999999999999999988874 46899999999999999999999999999999988743 44
Q ss_pred HHHHH
Q psy6284 239 ELAEL 243 (270)
Q Consensus 239 ~l~~~ 243 (270)
..+.+
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 44444
No 252
>KOG1308|consensus
Probab=97.22 E-value=5.9e-05 Score=63.42 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=74.0
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 177 LKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 177 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+..|.++.|++.|..+|.++|.....|-.+|.++..++....|+.+|..++.+||+...-+...+.++..+|+..++-.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 3467799999999999999999999999999999999999999999999999999999999999999999999877655
No 253
>KOG3081|consensus
Probab=97.21 E-value=0.017 Score=47.34 Aligned_cols=94 Identities=14% Similarity=0.203 Sum_probs=81.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH-HHH
Q psy6284 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR-KDI 223 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~-~~~ 223 (270)
.+.+.+|.-.|+..-+..|..+......|.|++.+++|++|....+.++.-++.++.++-++-.+-..+|...++. +.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 3468999999999888788999999999999999999999999999999999999999999999999999887765 455
Q ss_pred HHHHhhCCCCHHHHH
Q psy6284 224 LKVLALEPNNKQAEI 238 (270)
Q Consensus 224 ~~al~~~p~~~~a~~ 238 (270)
.+....+|+++-+..
T Consensus 266 ~QLk~~~p~h~~vk~ 280 (299)
T KOG3081|consen 266 SQLKLSHPEHPFVKH 280 (299)
T ss_pred HHHHhcCCcchHHHH
Confidence 666677888775543
No 254
>PRK10941 hypothetical protein; Provisional
Probab=97.21 E-value=0.007 Score=50.49 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+.+.=..+.+.++++.|+.+.+..+.+.|+++.-+..+|.+|.+++.+..|..+++..++..|+.+.+-.-+.++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~ 259 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH 259 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 45566778899999999999999999999999999999999999999999999999999999999998877666554
No 255
>KOG2396|consensus
Probab=97.19 E-value=0.0057 Score=54.24 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q psy6284 149 GEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH-FEDARKDILKVL 227 (270)
Q Consensus 149 ~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al 227 (270)
..-+..|+.|+...+.++.+|.+-.....+.+.+.+.-..|.+++...|+++..|...|.-.+..+. .+.|...|.++|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3445679999999999999999887666666669999999999999999999999999998888776 999999999999
Q ss_pred hhCCCCHHHHHHHHHH
Q psy6284 228 ALEPNNKQAEIELAEL 243 (270)
Q Consensus 228 ~~~p~~~~a~~~l~~~ 243 (270)
+.+|+++..|...-.+
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 9999999988765443
No 256
>KOG1915|consensus
Probab=97.13 E-value=0.011 Score=52.33 Aligned_cols=103 Identities=11% Similarity=0.043 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..|..-|..--.++++..|.+.|.+||+.+..+..+|...+.+-++.+....|...+++|+.+-|.-.+.||..-..--.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 34566677777899999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHH
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQ 235 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~ 235 (270)
+|+...|.+.|++=+...|+...
T Consensus 154 LgNi~gaRqiferW~~w~P~eqa 176 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQA 176 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHH
Confidence 99999999999999999997543
No 257
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.09 E-value=0.0011 Score=34.96 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT 198 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 198 (270)
.++.++|.++..+++++.|+.++++++.++|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45777888888888888888888888877764
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.09 E-value=0.0079 Score=54.51 Aligned_cols=107 Identities=17% Similarity=0.092 Sum_probs=90.1
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHH
Q psy6284 144 KEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY----VKAYQRRAAARRSLNHFEDA 219 (270)
Q Consensus 144 ~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~~g~~~~A 219 (270)
...+...|...........|+.+...+..|.++...|+.++|++.+++++...... .-.++.+|.++..+.+|++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 35678889999999999999999999999999999999999999999999644432 34788999999999999999
Q ss_pred HHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCC
Q psy6284 220 RKDILKVLALEPNNK-QAEIELAELNRKLNIP 250 (270)
Q Consensus 220 ~~~~~~al~~~p~~~-~a~~~l~~~~~~~~~~ 250 (270)
..+|.+..+.+.=.+ -..+..+.|+..+++.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 999999999765543 4455566677777776
No 259
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.0063 Score=45.80 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASL 193 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 193 (270)
..+...+..+...|++++|+..+.+++..+|.+..+|..+-.+|..+|+..+|+..|+++.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3466677888999999999999999999999999999999999999999999999998775
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.06 E-value=0.013 Score=52.06 Aligned_cols=107 Identities=14% Similarity=0.173 Sum_probs=82.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHH
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKL-DNTYVKAYQRRAAARRS 212 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~ 212 (270)
...|.++.+.|+.++|+++|+..++..|. +..+++|+-.|++.++.|.++...+.+-=.+ -|.+....|..|....+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 35677888999999999999999988775 4669999999999999999999888775333 25666666666665433
Q ss_pred -cCC---------------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284 213 -LNH---------------FEDARKDILKVLALEPNNKQAEIELAE 242 (270)
Q Consensus 213 -~g~---------------~~~A~~~~~~al~~~p~~~~a~~~l~~ 242 (270)
.++ -..|++.+.+|++.||.-+.....+..
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~ 388 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKS 388 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCC
Confidence 222 235789999999999998876655443
No 261
>KOG1941|consensus
Probab=97.05 E-value=0.0025 Score=54.33 Aligned_cols=119 Identities=18% Similarity=0.135 Sum_probs=78.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CC---
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDN------TY--- 199 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~--- 199 (270)
....|+.+...+.|+++++.|++|+.+.-.+ ..++..+|..|..++|+++|+-...++.++-. .+
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3446777777788888888888888764332 24677788888888888888777777776532 11
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHH----HHHHHHHHHHhCCCCCc
Q psy6284 200 -VKAYQRRAAARRSLNHFEDARKDILKVLALE--PNNKQA----EIELAELNRKLNIPLSP 253 (270)
Q Consensus 200 -~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a----~~~l~~~~~~~~~~~~a 253 (270)
.-++|.++.++..+|+.-+|.++++.+.++. -.|... ..-++.++...|+.+.+
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~a 265 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERA 265 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHH
Confidence 2366777888888888888888888776542 333322 23455556666655443
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.98 E-value=0.0015 Score=36.50 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=12.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASL 193 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al 193 (270)
+.++|.+|..+|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555533
No 263
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.94 E-value=0.031 Score=47.15 Aligned_cols=107 Identities=13% Similarity=0.097 Sum_probs=85.6
Q ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHH
Q psy6284 134 YSKEQGNKLVK-EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQRRAAA 209 (270)
Q Consensus 134 ~~~~~g~~~~~-~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~ 209 (270)
.|...|..-+. .++.+.|...|+.+++..|.+...|......+..+++.+.|...|++++..-|... ..|-.+...
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f 116 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEF 116 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 35555666566 67777799999999999999999999999999999999999999999998766544 577777777
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
=...|+.+...+..+++.++-|++.......
T Consensus 117 E~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 117 ESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 7889999999999999999999866555533
No 264
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.91 E-value=0.12 Score=39.41 Aligned_cols=112 Identities=12% Similarity=-0.096 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.+.+........++.+++...+...--+.|..+.+-..-|..++..|++.+|+..++.+..-.|..+-+--.++.|++.+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 45666778888899999999998888899999999999999999999999999999999999999888888889999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
|+.+-=.. -+.+++ .+.++.+......++..-
T Consensus 92 ~D~~Wr~~-A~evle-~~~d~~a~~Lv~~Ll~~~ 123 (160)
T PF09613_consen 92 GDPSWRRY-ADEVLE-SGADPDARALVRALLARA 123 (160)
T ss_pred CChHHHHH-HHHHHh-cCCChHHHHHHHHHHHhc
Confidence 99864332 223444 445777777777666544
No 265
>KOG1915|consensus
Probab=96.89 E-value=0.017 Score=51.20 Aligned_cols=110 Identities=19% Similarity=0.168 Sum_probs=90.6
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284 143 VKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218 (270)
Q Consensus 143 ~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~ 218 (270)
....|.+.+...|+.+|++-|+. +.+|...|....++.+...|...+-.||...|.+ +.+-..-..-..+++++.
T Consensus 377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDR 455 (677)
T ss_pred HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHH
Confidence 45678899999999999999874 6788888888889999999999999999998854 222222334457889999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284 219 ARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a 253 (270)
+...|++-|+..|+|-.+|...+.+...+|+...+
T Consensus 456 cRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRa 490 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRA 490 (677)
T ss_pred HHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999887554
No 266
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.87 E-value=0.022 Score=45.95 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=70.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhh----CCCC---HHHHHHHHHHHHHccCH-------HHHHHHHHHHHhcCC------CCH
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQT----YPHD---AVFFANRALCFLKMKNY-------VSAEADCTASLKLDN------TYV 200 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~----~p~~---~~~~~~~a~~~~~~~~~-------~~A~~~~~~al~~~p------~~~ 200 (270)
.+-....+++|+..|.-|+-. .... +.++..+|.+|..+++. ..|+..|.+++.... +..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 445566888999988888753 1122 56888999999999984 457777777776543 235
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 233 (270)
...|.+|....++|++++|++.|.+++..--.+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 788999999999999999999999999764433
No 267
>KOG1941|consensus
Probab=96.85 E-value=0.0066 Score=51.89 Aligned_cols=97 Identities=14% Similarity=0.076 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------C
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH----------DAVFFANRALCFLKMKNYVSAEADCTASLKLD------N 197 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p 197 (270)
.+...|..+-..+||++|+-+..+|.++-.. ...+.+.++..+..+|+.-.|.++|+++.++. +
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 4566788888999999999999999987332 14578899999999999999999999998763 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy6284 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230 (270)
Q Consensus 198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~ 230 (270)
.+......+|.+|...|+.+.|..-|+.|...-
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 456677889999999999999999999987654
No 268
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.81 E-value=0.037 Score=42.14 Aligned_cols=84 Identities=17% Similarity=-0.013 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
..+.....+-+..++.+++...+..+--+.|..+..-..-|..+...|++.+|+..|+.+..-.|..+-+...++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 35566666777888999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCC
Q psy6284 247 LNIP 250 (270)
Q Consensus 247 ~~~~ 250 (270)
+|++
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 8886
No 269
>KOG1586|consensus
Probab=96.80 E-value=0.034 Score=44.83 Aligned_cols=106 Identities=17% Similarity=0.103 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCC------C
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA------VFFANRALCFLK-MKNYVSAEADCTASLKLDN------T 198 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p------~ 198 (270)
+..+.+.++ .|+..+..+|+.++++++++.-+-. ..+..+|..|-. +.+++.|+.+|+.+-+... .
T Consensus 74 at~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 74 ATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 334444444 4677799999999999999865543 345567777755 4889999999999886543 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy6284 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI 238 (270)
Q Consensus 199 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 238 (270)
.-+.+...|..-..+++|.+|+..|+++....-+|+-..+
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 2356777777778899999999999999887777664443
No 270
>KOG1585|consensus
Probab=96.79 E-value=0.046 Score=44.44 Aligned_cols=123 Identities=13% Similarity=0.029 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCCH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLD-----NTYV 200 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~ 200 (270)
+..+...++.+...++|++|-.++.+|.+-..++ ..+|-..|.+...+..+.++...++++..+. |+-.
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 3445566777778899999999999999765444 3567777888888999999999999999774 4444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHH---HHHHHhCCCCCcc
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPN---NKQAEIELA---ELNRKLNIPLSPI 254 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l~---~~~~~~~~~~~a~ 254 (270)
..-..+|--....-++++|++.|++++.+-.+ ...+...++ .++.++..+.++.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 44444554556778999999999999876433 344444444 4455556665553
No 271
>KOG2471|consensus
Probab=96.73 E-value=0.0021 Score=56.73 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQ-T--------YP---------HDAVFFANRALCFLKMKNYVSAEADCTASL 193 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~-~--------~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 193 (270)
...+.+.|..+|+.|.|.-++.+|.+||. . .| ....+.||.|..|+..|+...|.++|.++.
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 34467889999999999999999999995 1 12 235799999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHH
Q psy6284 194 KLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 194 ~~~p~~~~a~~~~g~~~~~ 212 (270)
...-.++..|+++|.|...
T Consensus 363 ~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHHhcCcHHHHHHHHHHHH
Confidence 9999999999999998764
No 272
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.67 E-value=0.032 Score=38.39 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=42.5
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy6284 151 AIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY 199 (270)
Q Consensus 151 A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (270)
.+..+.+.++.+|++..+.+.+|.++...|++++|++.+-.++..++++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3567888999999999999999999999999999999999999999876
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.64 E-value=0.1 Score=45.05 Aligned_cols=118 Identities=21% Similarity=0.092 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--C-C-----
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH----DAVFFANRALCFLKMKNYVSAEADCTASLKL--D-N----- 197 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~-p----- 197 (270)
+.+..+...+..+.+.|.++.|...+.++....+. .+.+.+..+..+...|+..+|+..++..+.. . +
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 44566888899999999999999999998876532 5678888899999999999999998888871 1 0
Q ss_pred --------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284 198 --------------------------TYVKAYQRRAAARRSL------NHFEDARKDILKVLALEPNNKQAEIELAELNR 245 (270)
Q Consensus 198 --------------------------~~~~a~~~~g~~~~~~------g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 245 (270)
...++++.+|...... ++.++++..|..+++++|+...++...+..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 1135778888888777 89999999999999999999999999998876
Q ss_pred Hh
Q psy6284 246 KL 247 (270)
Q Consensus 246 ~~ 247 (270)
.+
T Consensus 304 ~~ 305 (352)
T PF02259_consen 304 KL 305 (352)
T ss_pred HH
Confidence 65
No 274
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.52 E-value=0.0049 Score=49.40 Aligned_cols=60 Identities=25% Similarity=0.178 Sum_probs=56.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV 200 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 200 (270)
...+.++.+.|.+.|.+++++-|+...-|+.+|....+.|+++.|...|+++++++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 456789999999999999999999999999999999999999999999999999999653
No 275
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.49 E-value=0.0054 Score=51.33 Aligned_cols=89 Identities=17% Similarity=0.144 Sum_probs=77.2
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 154 KYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR-RAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 154 ~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~-~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
.|.++....|+++..|...+.--.+.+-|.+.-..|.+++...|.+...|.. .+.-+...++++.|...|.++|++||+
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 4556666788999999998888888899999999999999999999999887 455678899999999999999999999
Q ss_pred CHHHHHHHHH
Q psy6284 233 NKQAEIELAE 242 (270)
Q Consensus 233 ~~~a~~~l~~ 242 (270)
++..|...-.
T Consensus 175 ~p~iw~eyfr 184 (435)
T COG5191 175 SPRIWIEYFR 184 (435)
T ss_pred CchHHHHHHH
Confidence 9998876543
No 276
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.48 E-value=0.18 Score=44.07 Aligned_cols=110 Identities=13% Similarity=0.093 Sum_probs=80.3
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCCCH-
Q psy6284 135 SKEQGNKLVK---EGKWGEAIEKYNVAI-QTYPHDAVFFANRALCFLKM---------KNYVSAEADCTASLKLDNTYV- 200 (270)
Q Consensus 135 ~~~~g~~~~~---~g~~~~A~~~y~~al-~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~- 200 (270)
....|..+.+ .|+.++|+..+..++ ...+.+++.+...|.+|-.+ ..+++|+.+|.+++.++|+..
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 4456777777 899999999998854 44567788888888887442 347889999999998876432
Q ss_pred --------------------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284 201 --------------------------------------------KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236 (270)
Q Consensus 201 --------------------------------------------~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a 236 (270)
+.+-.++.+..-.|++++|++.+++++++.|.....
T Consensus 262 GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l 341 (374)
T PF13281_consen 262 GINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWEL 341 (374)
T ss_pred hHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhH
Confidence 122235666677888999999999999998877665
Q ss_pred HHHHHHHH
Q psy6284 237 EIELAELN 244 (270)
Q Consensus 237 ~~~l~~~~ 244 (270)
...+..+.
T Consensus 342 ~St~~ni~ 349 (374)
T PF13281_consen 342 ESTLENIK 349 (374)
T ss_pred HHHHHHHH
Confidence 55555443
No 277
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.40 E-value=0.076 Score=47.31 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=78.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~ 218 (270)
-......|+...|-.....+|...|.++.....++.++..+|+|+.+.++...+-..-..-.++...+-..+..+|++++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 34456789999999999999999999999999999999999999999998877666555555666666667778888888
Q ss_pred HHHHHHHHHhhCCCCHHHHH
Q psy6284 219 ARKDILKVLALEPNNKQAEI 238 (270)
Q Consensus 219 A~~~~~~al~~~p~~~~a~~ 238 (270)
|...-.-.|.-+-+++++..
T Consensus 376 a~s~a~~~l~~eie~~ei~~ 395 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLT 395 (831)
T ss_pred HHHHHHHHhccccCChhhee
Confidence 88777666655555555443
No 278
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.30 E-value=0.11 Score=45.36 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=66.8
Q ss_pred HHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------------CC------------CC---HHHHHHHHH
Q psy6284 158 AIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--------------DN------------TY---VKAYQRRAA 208 (270)
Q Consensus 158 al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------------~p------------~~---~~a~~~~g~ 208 (270)
.|..+|.+.+.+..++.++..+|+...|.+.+++|+-. ++ .| ..+.++...
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 35778999999999999999999999888888887621 11 11 247777888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPN-NKQAEIELAELN 244 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~ 244 (270)
.+.+.|.+..|++.++-.+.+||. |+-.-......+
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ 148 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYY 148 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHH
Confidence 888999999999999999999998 775554444443
No 279
>KOG1070|consensus
Probab=96.26 E-value=0.09 Score=52.32 Aligned_cols=111 Identities=15% Similarity=0.031 Sum_probs=89.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAAARRSLNHF 216 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~~g~~ 216 (270)
...|-+.+++++|.+.|+.-++...+....|...|..++++++-++|-..+.+|+..-|. +....-..|+.-+..|+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 444556678888888888888877777888888888888888888888888888888876 777777788888888888
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 217 EDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
+.++..|+-.+.-.|.-.+.|.-......+.|.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence 888888888888888888888877776666554
No 280
>KOG2053|consensus
Probab=96.25 E-value=0.11 Score=49.46 Aligned_cols=107 Identities=11% Similarity=-0.008 Sum_probs=89.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF 216 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~ 216 (270)
-+|..+++.|.+++|..+++..-...+++-..+--+-.||..++.+++|..+|++++..+|. ..-.+.+-++|.+-+.|
T Consensus 48 LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 48 LKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSY 126 (932)
T ss_pred HHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHH
Confidence 34888999999999997776666667778888888999999999999999999999999999 88888888999999998
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 217 EDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 217 ~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
.+-.+.--+..+.-|.++-.......+.
T Consensus 127 k~qQkaa~~LyK~~pk~~yyfWsV~Sli 154 (932)
T KOG2053|consen 127 KKQQKAALQLYKNFPKRAYYFWSVISLI 154 (932)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHH
Confidence 8877776677778888875555444443
No 281
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.15 E-value=0.16 Score=39.72 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHH----H
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDN--TYVK----A 202 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~----a 202 (270)
...+...|..|.+.|+++.|++.|.++.+..... .+.++++-.+.+..+++..+.....++-.+-. .+.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 4467889999999999999999999988865433 45777788888889999999999988876533 2222 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6284 203 YQRRAAARRSLNHFEDARKDILKVL 227 (270)
Q Consensus 203 ~~~~g~~~~~~g~~~~A~~~~~~al 227 (270)
....|..+...++|.+|-+.|-.++
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 3345777888999999999887664
No 282
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.057 Score=44.65 Aligned_cols=77 Identities=18% Similarity=0.146 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
...|+=..+...++++.|..+.++.+.++|.++.-+.-+|.+|..+|.+.-|+++++..++.-|+++.+-.....+.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34445556667778888888888888888888888888888888888888888888888888888876665555443
No 283
>KOG1586|consensus
Probab=96.09 E-value=0.12 Score=41.76 Aligned_cols=113 Identities=14% Similarity=0.132 Sum_probs=78.4
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC-H-----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HH
Q psy6284 135 SKEQGNKLVKE-GKWGEAIEKYNVAIQTYPHD-A-----VFFANRALCFLKMKNYVSAEADCTASLKLDNTY------VK 201 (270)
Q Consensus 135 ~~~~g~~~~~~-g~~~~A~~~y~~al~~~p~~-~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 201 (270)
..+.|..|-.. .++++||.+|+++-+....+ . .++.-.|..-..+++|.+|+..|+++....-++ .+
T Consensus 116 ~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 116 HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 33455555444 78999999999998875443 2 234444555556899999999999988665443 23
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH--HHHHHHHHHHh
Q psy6284 202 -AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA--EIELAELNRKL 247 (270)
Q Consensus 202 -a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~l~~~~~~~ 247 (270)
.++..|.|++-..+.-.+...+++...++|..... ...|..+...+
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~ai 244 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAI 244 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHH
Confidence 35556888888899999999999999999976533 33444444333
No 284
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.19 Score=45.79 Aligned_cols=107 Identities=13% Similarity=-0.008 Sum_probs=88.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHH-HHHHhcCCCCHHHHHHH------HHHH
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC-TASLKLDNTYVKAYQRR------AAAR 210 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~-~~al~~~p~~~~a~~~~------g~~~ 210 (270)
....+...++...+.-....++..+|.++.++.++|.+....+....++..+ ..+.+..|.+.....-+ |...
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 4556667788888888999999999999999999999998877766655555 55899999988766665 8888
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
..+|+..++...++++..+.|.++.+...+....
T Consensus 153 ~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r 186 (620)
T COG3914 153 KLLGRTAEAELALERAVDLLPKYPRVLGALMTAR 186 (620)
T ss_pred HHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHH
Confidence 9999999999999999999999987777666653
No 285
>KOG0530|consensus
Probab=96.06 E-value=0.13 Score=42.26 Aligned_cols=113 Identities=12% Similarity=0.018 Sum_probs=95.7
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH-HHH
Q psy6284 143 VKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFE-DAR 220 (270)
Q Consensus 143 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~-~A~ 220 (270)
++...-..|+..-..+|.++|-+..+|..+=.|+..++ +..+=++++++++.-+|.|-..|.-+-.+...+|++. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 45556678999999999999999999988888887765 6777888889999999999999999988888899888 888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 221 KDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 221 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+.....+..|..|-.||....-+....+.+...+.
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~ 168 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELA 168 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 88999999999999999999999887777655444
No 286
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.05 E-value=0.099 Score=34.63 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFF---ANRALCFLKMKNYVSAEADCTASL 193 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~al 193 (270)
.+....+.|..+|.+.+.++|+..++++|+..++.+..+ -.+..+|...|+|.+++...-.-+
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677889999999999999999999999888776544 445566677788888777654433
No 287
>KOG2610|consensus
Probab=95.95 E-value=0.098 Score=44.55 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQT-YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~-~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
++-.-..+|..|+...-...+.+.+-. +|+- .-+.-..+.++...|-|++|....++++++++.+..+...++.++
T Consensus 140 ~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl 219 (491)
T KOG2610|consen 140 VKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL 219 (491)
T ss_pred hhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence 444455667777777777777777766 4444 334455777788888888888888888888888888888888877
Q ss_pred HHcCCHHHHHHHHHH
Q psy6284 211 RSLNHFEDARKDILK 225 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~ 225 (270)
...|++.++.+...+
T Consensus 220 em~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 220 EMNGRHKEGKEFMYK 234 (491)
T ss_pred HhcchhhhHHHHHHh
Confidence 777777777766553
No 288
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.89 E-value=0.51 Score=41.16 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV-FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~ 215 (270)
-.+....-.|+|+.|.+.|+.-+. +|..-. -+-.+-+--..+|+.+.|+.+.+++...-|.-++++...=...+..|+
T Consensus 125 LeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 125 LEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGD 203 (531)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCC
Confidence 345555666777777777765542 333211 111111222345666666666666666666666666666666666666
Q ss_pred HHHHHHHHHH
Q psy6284 216 FEDARKDILK 225 (270)
Q Consensus 216 ~~~A~~~~~~ 225 (270)
++.|++..+.
T Consensus 204 Wd~AlkLvd~ 213 (531)
T COG3898 204 WDGALKLVDA 213 (531)
T ss_pred hHHHHHHHHH
Confidence 6666665553
No 289
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.88 E-value=0.23 Score=42.72 Aligned_cols=88 Identities=13% Similarity=0.010 Sum_probs=52.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy6284 154 KYNVAIQTYPHDAVFFANRALCFLKMKN------------YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARK 221 (270)
Q Consensus 154 ~y~~al~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 221 (270)
.|++.+..+|.+..+|..+....-.+-. .+..+..+++|++.+|++...+..+=.+.....+.++..+
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~ 86 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAK 86 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556666666666666666554443322 2345566666666666666666665555566666666666
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q psy6284 222 DILKVLALEPNNKQAEIELA 241 (270)
Q Consensus 222 ~~~~al~~~p~~~~a~~~l~ 241 (270)
-+++++..+|++...|...-
T Consensus 87 ~we~~l~~~~~~~~LW~~yL 106 (321)
T PF08424_consen 87 KWEELLFKNPGSPELWREYL 106 (321)
T ss_pred HHHHHHHHCCCChHHHHHHH
Confidence 66666666666666655443
No 290
>KOG1310|consensus
Probab=95.86 E-value=0.023 Score=50.99 Aligned_cols=85 Identities=18% Similarity=0.079 Sum_probs=73.5
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcc
Q psy6284 178 KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS---LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPI 254 (270)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~ 254 (270)
.......|+.+|.+++...|.....+.+++.++.+ .|+.-.|+.++..++++||....|+..|+.++..++.+++++
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 34556789999999999999999999999988876 568888999999999999999999999999999999999998
Q ss_pred h--HhhhcCC
Q psy6284 255 K--VDFLHNP 262 (270)
Q Consensus 255 ~--~~~~~~~ 262 (270)
. -++.+.+
T Consensus 466 ~~~~alq~~~ 475 (758)
T KOG1310|consen 466 SCHWALQMSF 475 (758)
T ss_pred hhHHHHhhcC
Confidence 8 3444433
No 291
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.1 Score=43.67 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH----------------------
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL---------------------- 224 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~---------------------- 224 (270)
..-+.-+.-....+++.+|...+..++...|.+..+...++.+|...|+.+.|...+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 3455556667789999999999999999999999999999999999999977766554
Q ss_pred ------------HHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 225 ------------KVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 225 ------------~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+.+..||+|.++...++..+...|+...++.
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale 257 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALE 257 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4455678888888888888888888777765
No 292
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.71 E-value=0.027 Score=32.05 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
++.++|.+|..+|++++|+..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 445555555555555555555555554
No 293
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.67 E-value=0.25 Score=37.14 Aligned_cols=108 Identities=13% Similarity=-0.100 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.+.+.........+..++...+...--+.|+.+.+-.--|..+...|++.+|+..++.+..-.+..+-+--.++.|++.+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34555666666899999988888777789999999999999999999999999999999998888887777889999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAEL 243 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 243 (270)
||.+-=.-. ..++.. -.++++......+
T Consensus 92 ~Dp~Wr~~A-~~~le~-~~~~~a~~Lv~al 119 (153)
T TIGR02561 92 GDAEWHVHA-DEVLAR-DADADAVALVRAL 119 (153)
T ss_pred CChHHHHHH-HHHHHh-CCCHhHHHHHHHH
Confidence 998643322 233333 3445554444433
No 294
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.63 E-value=0.061 Score=37.25 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=32.8
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284 142 LVKEGKWGEAIEKYNVAIQTYPHD---------AVFFANRALCFLKMKNYVSAEADCTASLKL 195 (270)
Q Consensus 142 ~~~~g~~~~A~~~y~~al~~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 195 (270)
..+.|+|.+|++.+.+.++..... ..+..++|.++...|++++|+..+++++.+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456788888888877777653221 234555555555666666666666655544
No 295
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.60 E-value=0.036 Score=31.48 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
.++.++|.+|..+|++++|+..+++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 57889999999999999999999999875
No 296
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.60 E-value=0.11 Score=50.87 Aligned_cols=111 Identities=13% Similarity=0.128 Sum_probs=88.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMK-------NYVSAEADCTASLKLDNTYVKAYQRR 206 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~~~p~~~~a~~~~ 206 (270)
...+++...+.|++|+..|++.-.-.|.. -++.+..|.+.+..- .+.+|+.-|++.- -.|.-+--|+..
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGK 558 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhH
Confidence 34667788899999999999998888875 468888888887642 4677777776543 346677788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
|.+|.++|++++-+++|.-|++.-|+++.+......+-.++.
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLH 600 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999887766666554443
No 297
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.52 E-value=0.087 Score=36.48 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=46.8
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284 175 CFLKMKNYVSAEADCTASLKLDNT---------YVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231 (270)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~---------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p 231 (270)
-.++.++|.+|++.+.+.+..... ...+..++|.++...|++++|+..++.++++-.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 345789999999888888865321 246788899999999999999999999998754
No 298
>KOG4507|consensus
Probab=95.49 E-value=0.082 Score=48.15 Aligned_cols=78 Identities=18% Similarity=0.129 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
.+.+.++.+.+.|-.-+|-..+.++|.++...+..++.+|.+++.+.+.+.|++.++.|+.++|+++..-..+-.+.+
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 466889999999999999999999999998899999999999999999999999999999999999877666555444
No 299
>KOG0529|consensus
Probab=95.38 E-value=0.28 Score=42.88 Aligned_cols=101 Identities=17% Similarity=0.107 Sum_probs=84.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CCHHHHH
Q psy6284 147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN--YVSAEADCTASLKLDNTYVKAYQRRAAARRSL----NHFEDAR 220 (270)
Q Consensus 147 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~----g~~~~A~ 220 (270)
-+++-+.+-..+|..+|+...+|+.+..++.+... +..=++.|+++++.||.|..+|..+-.+.... ....+-+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 56777888899999999999999999999988764 67889999999999999888876665554432 2367788
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 221 KDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 221 ~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
+...+++.-|+.|-.||.....++..+
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 999999999999999999999988754
No 300
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.35 E-value=0.42 Score=41.29 Aligned_cols=101 Identities=24% Similarity=0.189 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCC-C-------------------------C-------HHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQ-TYP-H-------------------------D-------AVFFANRALCFL 177 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~-~~p-~-------------------------~-------~~~~~~~a~~~~ 177 (270)
.....+.+..+...|+-.+|+..+...+. ... . . ..++..+|.-..
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 34566778888999999999999988887 111 0 1 235666666555
Q ss_pred Hc------cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q psy6284 178 KM------KNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF-----------------EDARKDILKVLALEPN 232 (270)
Q Consensus 178 ~~------~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~-----------------~~A~~~~~~al~~~p~ 232 (270)
.+ +..++++..|.+++.++|.+.++|+.+|..+..+-+. ..|+..|-+|+.+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 66 7888999999999999999999999999988754322 3478888888888877
No 301
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.32 E-value=0.17 Score=41.82 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=65.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
..=..+...++++.|..+-.+.+.++|.++.-+.-+|.+|.++|.+..|+.+++..+...|+.+.+-.-++...
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~ 259 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL 259 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 44456778899999999999999999999999999999999999999999999999999999887766655443
No 302
>KOG0529|consensus
Probab=95.29 E-value=1.2 Score=38.97 Aligned_cols=117 Identities=13% Similarity=0.016 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc------------CHHHHHHHHHHHHhcCCCCH
Q psy6284 134 YSKEQGNKLVKEGKWG-EAIEKYNVAIQTYPHDAVFFANRALCFLKMK------------NYVSAEADCTASLKLDNTYV 200 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~-~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~al~~~p~~~ 200 (270)
.....-....+.|.|+ +++..=.+.++.+|+...+|+.+=.++.... -+++-+.....++..+|+..
T Consensus 30 ~~~s~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY 109 (421)
T KOG0529|consen 30 SLFSIIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY 109 (421)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH
Confidence 3444444455566665 5666666677789999888877766654432 34555677788999999999
Q ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 201 KAYQRRAAARRSLN--HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 201 ~a~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
.+|+-+..++.+.+ ++..-++.+++++++||.|-.+|.....+.......
T Consensus 110 ~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 110 GAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS 161 (421)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence 99999999998766 468889999999999999999999998887766544
No 303
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.26 E-value=0.036 Score=31.34 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
.+|..+|.+-...++|++|+.+|++||++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35777888888888888888888888876
No 304
>KOG3364|consensus
Probab=95.17 E-value=0.35 Score=35.72 Aligned_cols=77 Identities=14% Similarity=0.098 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEG---KWGEAIEKYNVAIQ-TYPH-DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 133 ~~~~~~g~~~~~~g---~~~~A~~~y~~al~-~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g 207 (270)
+..++.+..+.+.. +..+.|..+...++ -.|. .-+..|.+|..++++++|+.++.+++.+++.+|+|..+.-..-
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 34566666666544 56788889998886 4443 3467888999999999999999999999999999998765544
Q ss_pred HH
Q psy6284 208 AA 209 (270)
Q Consensus 208 ~~ 209 (270)
.+
T Consensus 113 ~i 114 (149)
T KOG3364|consen 113 TI 114 (149)
T ss_pred HH
Confidence 33
No 305
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.17 E-value=1.4 Score=37.10 Aligned_cols=112 Identities=14% Similarity=-0.047 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHhcCCCC
Q psy6284 132 AVYSKEQGNKLVK----EGKWGEAIEKYNVAIQTYPHD-AVFFANRALCFLKMK-------NYVSAEADCTASLKLDNTY 199 (270)
Q Consensus 132 a~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~p~~-~~~~~~~a~~~~~~~-------~~~~A~~~~~~al~~~p~~ 199 (270)
+......|..++. ..|+.+|...|.++.+..-.. ..+.+++|.+|..-. +...|+..+.++.... +
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~ 186 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N 186 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C
Confidence 3356667888776 459999999999998874333 345888888886641 3347888898888776 8
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 200 VKAYQRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 200 ~~a~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
+.+.+.+|.+|.. ..++++|...|.++.+... ..+...++ ++..-|
T Consensus 187 ~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 187 PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 8899999988854 3389999999999999876 88888888 655555
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.11 E-value=0.5 Score=35.52 Aligned_cols=74 Identities=12% Similarity=-0.032 Sum_probs=42.2
Q ss_pred HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 177 LKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 177 ~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
+...+++++...+...--+.|.....-..-|..+...|++.+|+..|+....-.+..+-+...++.|+..+|++
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 33555555555555555555655555555566666666666666666655555555555555555555555553
No 307
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.03 E-value=1.2 Score=39.59 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHH--------------------------------------
Q psy6284 128 RIASAVYSKEQGNKLVKEGK-WGEAIEKYNVAIQTYPHDAVF-------------------------------------- 168 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~-~~~A~~~y~~al~~~p~~~~~-------------------------------------- 168 (270)
+...+--+..-+..+.+.|. =++|+..++.++...|.+..+
T Consensus 375 rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 375 RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 33344456666777777777 678888888888877776421
Q ss_pred ----------HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6284 169 ----------FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILK 225 (270)
Q Consensus 169 ----------~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 225 (270)
...=|.-++..|+|.++.-...=+.+++| ++.++..+|.++....+|++|..++..
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 12222333445666666666666666666 666666666666666666666666653
No 308
>KOG1070|consensus
Probab=95.01 E-value=0.47 Score=47.59 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
....|...|..++++.+-+.|...+.+||.-.|. +.....--|.+-++.|+-+.+...|+-.+..+|.-...|..+..
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 4556888899999999999999999999999998 77888889999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPNNKQA 236 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a 236 (270)
.-.+.|+.+-++..|++++.+.-.-..+
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 9999999999999999999886544433
No 309
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.95 E-value=0.12 Score=28.87 Aligned_cols=33 Identities=15% Similarity=0.023 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCC
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDIL--KVLALEPNN 233 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~--~al~~~p~~ 233 (270)
+.++.+|..+...|++++|+..|+ -+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 456667777777777777777733 666666654
No 310
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.81 E-value=0.15 Score=42.53 Aligned_cols=62 Identities=16% Similarity=0.066 Sum_probs=50.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 151 AIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 151 A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
|+.+|.+|+.+.|.+...|+.+|.++...++.-.|+-+|-+++.....++.|.-++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997776678888888877766
No 311
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.80 E-value=0.29 Score=43.35 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA 191 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 191 (270)
......|.-+|.+|+|.++..+-.-..++.| .+.+|-.+|.|.+..++|++|..++..
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3466778889999999999999888899999 899999999999999999999998754
No 312
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.48 Score=43.29 Aligned_cols=107 Identities=17% Similarity=0.008 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-
Q psy6284 149 GEAIEKYNVAIQTYPHDAVFFAN--RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILK- 225 (270)
Q Consensus 149 ~~A~~~y~~al~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~- 225 (270)
..|+..+...+.++|.++.++.. +++.+..+++...+......++..+|.+..++.++|.++...|....+...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~ 127 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEI 127 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33777777777888888876444 478888889998999999999999999999999999999888887777766666
Q ss_pred HHhhCCCCHHHHHHH------HHHHHHhCCCCCcch
Q psy6284 226 VLALEPNNKQAEIEL------AELNRKLNIPLSPIK 255 (270)
Q Consensus 226 al~~~p~~~~a~~~l------~~~~~~~~~~~~a~~ 255 (270)
+....|.|.+....+ +.....+|+..++..
T Consensus 128 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (620)
T COG3914 128 AEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAEL 163 (620)
T ss_pred HHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHH
Confidence 899999999998888 666666666655543
No 313
>KOG1550|consensus
Probab=94.55 E-value=1.1 Score=41.73 Aligned_cols=110 Identities=14% Similarity=-0.049 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHH-----cCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhcCC
Q psy6284 133 VYSKEQGNKLVK-----EGKWGEAIEKYNVAIQT-----YPHDAVFFANRALCFLKMK-----NYVSAEADCTASLKLDN 197 (270)
Q Consensus 133 ~~~~~~g~~~~~-----~g~~~~A~~~y~~al~~-----~p~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~al~~~p 197 (270)
......|..++. .+|.+.|+.+|..+.+. .-.++.+.+.+|.||.+-. +++.|+..+.++-.+.
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g- 323 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG- 323 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-
Confidence 334444555543 35777788777777661 1114556777777776632 5666777777666654
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 198 TYVKAYQRRAAARRSLN---HFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 198 ~~~~a~~~~g~~~~~~g---~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
++.+.+.+|.++..-. ++..|.++|..|.+ -.+..+...++.|+..
T Consensus 324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK--AGHILAIYRLALCYEL 372 (552)
T ss_pred -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH--cCChHHHHHHHHHHHh
Confidence 4556777777776544 56677777776664 3667777777777543
No 314
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.47 E-value=0.18 Score=42.09 Aligned_cols=62 Identities=21% Similarity=0.107 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 185 AEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 185 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
|..+|.+|+.+.|++..+|+.+|.+....|+.-.|+-+|-+++...--.+.|..+|..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998877779999999999888
No 315
>KOG1585|consensus
Probab=94.44 E-value=1.2 Score=36.41 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=46.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH----hcC--CCCHHHHHH
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASL----KLD--NTYVKAYQR 205 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~--p~~~~a~~~ 205 (270)
++-.....-+.++|+..|++++.+-..+ .+.+.-.+.++.++..|.+|-..+.+-. ..+ ++-.+++..
T Consensus 116 KAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va 195 (308)
T KOG1585|consen 116 KAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVA 195 (308)
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHH
Confidence 3333344455566666666665543222 2344445555666666666655554422 112 223334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 206 RAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
.-.++....+|..|..+|+.+.++
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcC
Confidence 444455555666776666666554
No 316
>KOG0530|consensus
Probab=94.33 E-value=0.39 Score=39.60 Aligned_cols=112 Identities=16% Similarity=0.080 Sum_probs=72.8
Q ss_pred HHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q psy6284 135 SKEQGNKLVKEGKWG-EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS- 212 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~-~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~- 212 (270)
|-.+-...-..|++. .-+......|..+..+..+|..+-.|....+.++.=+..+.+.|+.|--|-.||..+-.+...
T Consensus 115 WHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~ 194 (318)
T KOG0530|consen 115 WHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNT 194 (318)
T ss_pred HHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEec
Confidence 333444444455555 556666666666666667777777777777777777777777777666555565554333322
Q ss_pred cC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 213 LN-----HFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 213 ~g-----~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
.| ..+.-+....+.|.+.|+|..+|+.|.-++..
T Consensus 195 ~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 195 KGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred cCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 12 23455666777888889999999999988876
No 317
>KOG4814|consensus
Probab=94.33 E-value=0.26 Score=45.49 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT------YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
.++.|-|.-+++..+|..++++|...+..-|. ..+....++.||..+.+.+.|.+.++.|=+.+|.++-....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 36778888899999999999999999987663 467888899999999999999999999999999998777776
Q ss_pred HHHHHHhCCCCCcch
Q psy6284 241 AELNRKLNIPLSPIK 255 (270)
Q Consensus 241 ~~~~~~~~~~~~a~~ 255 (270)
..+-..-++..+|+-
T Consensus 435 ~~~~~~E~~Se~AL~ 449 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALT 449 (872)
T ss_pred HHHHHHhcchHHHHH
Confidence 666655566555543
No 318
>KOG1550|consensus
Probab=94.18 E-value=1.8 Score=40.32 Aligned_cols=106 Identities=15% Similarity=0.016 Sum_probs=82.8
Q ss_pred HHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284 135 SKEQGNKLVKEG-----KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK---NYVSAEADCTASLKLDNTYVKAYQRR 206 (270)
Q Consensus 135 ~~~~g~~~~~~g-----~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~a~~~~ 206 (270)
....|..|.+.. ++..|+.+|.++-+. .++.+.+.+|.|+..-. ++..|..+|..|... .+..|.+++
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~l 366 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRL 366 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHH
Confidence 445778877743 789999999998776 56677888999987765 578899999877754 578899999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 207 AAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 207 g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
|.+|.. .-+.+.|..+|.++.+.+ ++.|...++..+.-
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~ 408 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEY 408 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHH
Confidence 999864 248899999999999887 66666666666543
No 319
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.17 E-value=0.35 Score=39.02 Aligned_cols=78 Identities=14% Similarity=0.032 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy6284 130 ASAVYSKEQGNKLVKEGK-------WGEAIEKYNVAIQTYPH------DAVFFANRALCFLKMKNYVSAEADCTASLKLD 196 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~-------~~~A~~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 196 (270)
..|..+...+..+-..|+ +..|+..|.++++.... ...+.+.+|.+..++|++++|+.+|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 345556666777666666 55666666666654322 25689999999999999999999999999765
Q ss_pred CCCH-HHHHHHH
Q psy6284 197 NTYV-KAYQRRA 207 (270)
Q Consensus 197 p~~~-~a~~~~g 207 (270)
..+. .....+|
T Consensus 196 ~~s~~~~l~~~A 207 (214)
T PF09986_consen 196 KASKEPKLKDMA 207 (214)
T ss_pred CCCCcHHHHHHH
Confidence 4333 3444444
No 320
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.14 E-value=1.3 Score=37.09 Aligned_cols=65 Identities=12% Similarity=-0.047 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 164 HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
....++..++..+...++++.++..+++.+..+|.+..+|.++=.+|...|+...|+..|.+.-+
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999988766
No 321
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.03 E-value=0.11 Score=29.26 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLD 196 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 196 (270)
.+|..+|.+-+...+|++|+.+|.+++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888753
No 322
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.83 E-value=2.4 Score=35.68 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC----CCC----------HHHHHHHHHHHHHccCHHHHHH---HHHHHH
Q psy6284 132 AVYSKEQGNKLVKEG-KWGEAIEKYNVAIQTY----PHD----------AVFFANRALCFLKMKNYVSAEA---DCTASL 193 (270)
Q Consensus 132 a~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~----p~~----------~~~~~~~a~~~~~~~~~~~A~~---~~~~al 193 (270)
+..+++-|...++.+ +++.|+..+++++++. +.. ..++..++.+|+..+.++.... ..+.+-
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~ 114 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE 114 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 455666666666666 7777776666666652 110 2355556666666655443222 222222
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy6284 194 KLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230 (270)
Q Consensus 194 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~ 230 (270)
...|+.+..++..=.+....++.+++.+.+.+.+.--
T Consensus 115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 3335555555333333434566666666666666543
No 323
>KOG2047|consensus
Probab=93.73 E-value=2.6 Score=39.28 Aligned_cols=125 Identities=14% Similarity=0.085 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-----CHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT-----YVKAYQR 205 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----~~~a~~~ 205 (270)
+...|..-+...-.-|-++..-..|++.|++.--.|..-.|.|..+....-|+++...|++.+.+-+. -...|+.
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLt 555 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLT 555 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHH
Confidence 34445555666667788888899999999999889999999999999999999999999999998752 2335666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCCCCcch
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALEPNN--KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.....+.--..+.|...|++||+..|.. ..++...+.+..+.|-...++.
T Consensus 556 kfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 556 KFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6666677778999999999999998833 2444555555555555444443
No 324
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.67 E-value=2.9 Score=33.08 Aligned_cols=87 Identities=14% Similarity=-0.034 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT-Y--VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN-KQAEIELAE 242 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~--~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~~ 242 (270)
.+-+.+|-.+...+++++|+..++.++....+ + .-+-.|+|.+...+|.+++|+..+...- +++. +......+.
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGD 167 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGD 167 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhh
Confidence 35566788888999999999999999865443 2 3467889999999999999998876432 1221 233566788
Q ss_pred HHHHhCCCCCcch
Q psy6284 243 LNRKLNIPLSPIK 255 (270)
Q Consensus 243 ~~~~~~~~~~a~~ 255 (270)
++...|+..++..
T Consensus 168 ill~kg~k~~Ar~ 180 (207)
T COG2976 168 ILLAKGDKQEARA 180 (207)
T ss_pred HHHHcCchHHHHH
Confidence 8888888877755
No 325
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.67 E-value=0.1 Score=26.61 Aligned_cols=23 Identities=17% Similarity=0.003 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 202 AYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
+.+.+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666665543
No 326
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.64 E-value=2.1 Score=37.52 Aligned_cols=83 Identities=14% Similarity=0.029 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHH
Q psy6284 165 DAVFFANRALCFLKMKNYVSAEADCTASLKL----DNTYVKAYQRRAAARRS---LNHFEDARKDILK-VLALEPNNKQA 236 (270)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~---~g~~~~A~~~~~~-al~~~p~~~~a 236 (270)
+++...++-++|...++|+.-+...+..-.+ -+......+.+|.++-+ .|+.++|+..+.. ....++.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3567778889999999999999988887776 45667778888999988 9999999999999 56667789999
Q ss_pred HHHHHHHHHHh
Q psy6284 237 EIELAELNRKL 247 (270)
Q Consensus 237 ~~~l~~~~~~~ 247 (270)
+..+|.++..+
T Consensus 220 ~gL~GRIyKD~ 230 (374)
T PF13281_consen 220 LGLLGRIYKDL 230 (374)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 327
>KOG3617|consensus
Probab=93.34 E-value=1.4 Score=42.20 Aligned_cols=90 Identities=17% Similarity=0.057 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHH----------HhcCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTAS----------LKLDN----------TYVKAYQRRAAARRSLNHFEDARKDILK 225 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~a----------l~~~p----------~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 225 (270)
-..|++.|.-+...++.+.|+++|+++ +.-+| .+...|-..|+-+...|+.+.|+..|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 357899999888999999999999874 23344 2345666678888899999999998875
Q ss_pred H---------------------HhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 226 V---------------------LALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 226 a---------------------l~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
| |.....|..|-++|+..+...|+..+|+.
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence 4 33446788999999999988888877766
No 328
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=93.21 E-value=0.29 Score=36.63 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.-......++...+..|++..|.+....++..+|+|..++..++.++..+|...++..
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~ 125 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENAN 125 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHH
Confidence 3445666677778888888888888888888888888888888888888776655433
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.21 E-value=0.55 Score=27.43 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 204 QRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 204 ~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
+.+|.+|..+|+.+.|++.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888874
No 330
>KOG2300|consensus
Probab=93.10 E-value=4.8 Score=36.34 Aligned_cols=121 Identities=12% Similarity=0.024 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCC-------
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLK-LDNTY------- 199 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~------- 199 (270)
.+....-.|.....-+.|+.|...|..|++..... ..+-.|+|..|+..++-+. +.++++ +.|.|
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq 441 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQ 441 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHH
Confidence 34455556777778899999999999999875432 4567789999999887554 333332 34432
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 200 ---VKAYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 200 ---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..++|..|...+..+++.+|...+.+.++.... .......|+.+-.-+|+..++..
T Consensus 442 ~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~n 506 (629)
T KOG2300|consen 442 RLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRN 506 (629)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHh
Confidence 347888899999999999999999999987521 12344455666666787776655
No 331
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.94 E-value=1.8 Score=37.88 Aligned_cols=100 Identities=17% Similarity=0.064 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHHccCHHHHHHHHHHHHhcCC-----CCHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-DAV-FFANRALCFLKMKNYVSAEADCTASLKLDN-----TYVKAYQRR 206 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~~~a~~~~ 206 (270)
.++.....+.++|-+..|++..+-.+.++|. |+. +.+.+=...++.++|+=-+..++....... .-+..-|..
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 4566677888999999999999999999999 654 344444455667888877777776555211 133567888
Q ss_pred HHHHHHcCCH---------------HHHHHHHHHHHhhCCCC
Q psy6284 207 AAARRSLNHF---------------EDARKDILKVLALEPNN 233 (270)
Q Consensus 207 g~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 233 (270)
+.+++.+++- ++|...+.+|+..-|.-
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 9999999998 89999999999887643
No 332
>KOG2422|consensus
Probab=92.92 E-value=1.9 Score=39.55 Aligned_cols=100 Identities=14% Similarity=0.063 Sum_probs=76.1
Q ss_pred cCCHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----------------
Q psy6284 145 EGKWGEAIEKYNVAIQT------------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKL----------------- 195 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------- 195 (270)
...|++|...|.-+... .|.+...++.+|.+...+|+.+-|....+++|-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 45688888888887764 3566788999999999999999888888777732
Q ss_pred ----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q psy6284 196 ----DNTYV---KAYQRRAAARRSLNHFEDARKDILKVLALEPN-NKQAEIELAELN 244 (270)
Q Consensus 196 ----~p~~~---~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~ 244 (270)
.|.|. .+.|+.=..+.+.|++..|.+.++-.+.++|. |+-+...+..++
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHH
Confidence 12222 35555566677899999999999999999998 876655555554
No 333
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.80 E-value=2.7 Score=36.21 Aligned_cols=83 Identities=11% Similarity=-0.027 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHHHH
Q psy6284 148 WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR---SLNHFEDARKDIL 224 (270)
Q Consensus 148 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~---~~g~~~~A~~~~~ 224 (270)
.+..+..|++||+.+|++..++..+-.+..+.-+.++...-+++++..+|++...|..+-.... ..-.+.+.+..|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 4677889999999999999988888888888899999999999999999999887765443332 2346778888888
Q ss_pred HHHhhC
Q psy6284 225 KVLALE 230 (270)
Q Consensus 225 ~al~~~ 230 (270)
+||+.-
T Consensus 127 ~~l~~L 132 (321)
T PF08424_consen 127 KCLRAL 132 (321)
T ss_pred HHHHHH
Confidence 887653
No 334
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.48 E-value=0.52 Score=26.21 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=9.1
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q psy6284 136 KEQGNKLVKEGKWGEAIEK 154 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~ 154 (270)
...|..++.+|+|++|+..
T Consensus 5 y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 5 YGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3444555555555555555
No 335
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=92.41 E-value=0.51 Score=35.31 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV 183 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~ 183 (270)
-+......+...+..|+|..|....+.++..+|++..+...++.++..++.-.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 35567888999999999999999999999999999999999998887776543
No 336
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.37 E-value=0.22 Score=25.31 Aligned_cols=24 Identities=17% Similarity=-0.148 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCT 190 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~ 190 (270)
.+.+++|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677777777777777777654
No 337
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.26 E-value=4.4 Score=31.53 Aligned_cols=111 Identities=9% Similarity=0.054 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHH-hcCCCCHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASL-KLDNTYVKAYQRRAA 208 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~~~~g~ 208 (270)
.....|......|+...|+..|..+-.-.|.- -.+.+.-|.++...|.|+....-.+..- .-+|-...+.-.+|.
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALgl 175 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGL 175 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhH
Confidence 45667899999999999999999976544321 2466777788888899988665444322 233445567778899
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 245 (270)
+-++.|++.+|.+.|.+... |-.-+..-.+.+.+..
T Consensus 176 Aa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred HHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 99999999999999998876 5555555555555443
No 338
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.23 E-value=1.3 Score=29.23 Aligned_cols=31 Identities=32% Similarity=0.277 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
.|..+..++..+=+.|++.+|+.+|+++++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4556777888889999999999999888764
No 339
>KOG2047|consensus
Probab=92.04 E-value=4.2 Score=37.98 Aligned_cols=21 Identities=14% Similarity=0.166 Sum_probs=8.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAI 159 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al 159 (270)
|..|-..|+.+.|...|++++
T Consensus 394 aklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhh
Confidence 333333444444444444443
No 340
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=91.63 E-value=7.3 Score=32.71 Aligned_cols=100 Identities=11% Similarity=-0.090 Sum_probs=74.6
Q ss_pred HHHHHHHHHHc-----C--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHH
Q psy6284 135 SKEQGNKLVKE-----G--KWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKAY 203 (270)
Q Consensus 135 ~~~~g~~~~~~-----g--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~ 203 (270)
....|..+..- - +...|+..|.++-... ++.+.+++|.+|.. ..++.+|+.+|.++..... ..+.
T Consensus 151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 44555554443 1 3347888898887765 88899999988865 4589999999999999887 8899
Q ss_pred HHHHHHHHHcC---------------CHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284 204 QRRAAARRSLN---------------HFEDARKDILKVLALEPNNKQAEIE 239 (270)
Q Consensus 204 ~~~g~~~~~~g---------------~~~~A~~~~~~al~~~p~~~~a~~~ 239 (270)
+.++ +++..| +...|...+.++....+........
T Consensus 227 ~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 227 YNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred HHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 9999 666555 8888899998888776655444333
No 341
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.55 E-value=1.6 Score=36.66 Aligned_cols=64 Identities=16% Similarity=0.077 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 195 (270)
...+...+..+...|+++.++..+++.+..+|.+-.+|..+-..|+..|+...|+..|++.-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3456778888999999999999999999999999999999999999999999999999887664
No 342
>KOG3617|consensus
Probab=91.46 E-value=2 Score=41.21 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH----------hhCCC----------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAI----------QTYPH----------DAVFFANRALCFLKMKNYVSAEADCTASL 193 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al----------~~~p~----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al 193 (270)
.+++.+..+-.++|.+.|+++|+++- ..+|. ++.+|.--|..+-..|+.+.|+..|..|-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 45566677777889999999998752 22332 34455556777777888888888887764
Q ss_pred hc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 194 KL---------------------DNTYVKAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 194 ~~---------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
.. ...+..|.|-+|..|...|++.+|+..|.+|-.
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 32 346778999999999999999999998887643
No 343
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.45 E-value=8.1 Score=34.07 Aligned_cols=126 Identities=16% Similarity=0.002 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-HHHHH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD--AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV-KAYQR 205 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~a~~~ 205 (270)
.++...-...|....-.||=..|.++-.++-.+-..+ +.++..-+.+-+--|+++.|..-|+-.+. +|... -.+..
T Consensus 81 RdrgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRg 159 (531)
T COG3898 81 RDRGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRG 159 (531)
T ss_pred hhhHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHH
Confidence 3455566677888888899999999988887654444 55677778888889999999999986663 44322 23333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+-..-..+|..+.|+.+-+.+...-|.-+-++...-...+.-|+-..+++
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Alk 209 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALK 209 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHH
Confidence 33344579999999999999999999999999988888888898877776
No 344
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.36 E-value=1.2 Score=39.41 Aligned_cols=107 Identities=14% Similarity=0.120 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYP---------HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p---------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 205 (270)
+.-....+.-.|||..|++...- |+++. -....+|..|.||+.+++|.+|+..|..++-.-......+..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~ 203 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ 203 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 33455666788999999988654 33332 235689999999999999999999999988432211111111
Q ss_pred HH-HHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHH
Q psy6284 206 RA-AARRSLNHFEDARKDILKVLALEPN--NKQAEIELAE 242 (270)
Q Consensus 206 ~g-~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~l~~ 242 (270)
.. +--.-....|+....+--|+.+.|. +..+...+.+
T Consensus 204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lke 243 (404)
T PF10255_consen 204 RSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKE 243 (404)
T ss_pred ccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 11 1112234566677777778888885 4444444433
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.27 E-value=0.63 Score=39.00 Aligned_cols=55 Identities=24% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+.+...+..|...|.+.+|++..++++++||=+.+.+..+..++..+|+..++++
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~k 334 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhh
Confidence 3455567788899999999999999999999999999999999999999877766
No 346
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=91.03 E-value=2.1 Score=36.66 Aligned_cols=97 Identities=22% Similarity=0.180 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--DNTYVKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 147 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
+|..-...|.-...+. .++.+-.|++.+.-+..-...++...+....- =..+.-.|-.+|..+.++|+.++|...|.
T Consensus 311 DW~~I~aLYdaL~~~a-pSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAA-PSPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhC-CCCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 4554444554444333 34567788998888777788888777655543 23566678889999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHH
Q psy6284 225 KVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 225 ~al~~~p~~~~a~~~l~~~~ 244 (270)
+++.+.++..+....+..+-
T Consensus 390 rAi~La~~~aer~~l~~r~~ 409 (415)
T COG4941 390 RAIALARNAAERAFLRQRLD 409 (415)
T ss_pred HHHHhcCChHHHHHHHHHHH
Confidence 99999999888877766553
No 347
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.80 E-value=8.9 Score=32.20 Aligned_cols=17 Identities=6% Similarity=-0.193 Sum_probs=8.6
Q ss_pred ccCHHHHHHHHHHHHhc
Q psy6284 179 MKNYVSAEADCTASLKL 195 (270)
Q Consensus 179 ~~~~~~A~~~~~~al~~ 195 (270)
.++.+++.+.+.+.+..
T Consensus 134 ~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 134 SFDEEEYEEILMRMIRS 150 (278)
T ss_pred cCChhHHHHHHHHHHHh
Confidence 45555555555555543
No 348
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.74 E-value=2.2 Score=30.41 Aligned_cols=73 Identities=12% Similarity=0.061 Sum_probs=56.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q psy6284 172 RALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQRRAAARRSLNH-----------FEDARKDILKVLALEPNNKQAE 237 (270)
Q Consensus 172 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~a~ 237 (270)
+|.-++..|++-+|++..+..+...+++. -.+..-|.++..+.. .-.|+++|.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778899999999999999998887655 445555777755442 4568999999999999997777
Q ss_pred HHHHHHH
Q psy6284 238 IELAELN 244 (270)
Q Consensus 238 ~~l~~~~ 244 (270)
..++.-+
T Consensus 82 ~~la~~l 88 (111)
T PF04781_consen 82 FELASQL 88 (111)
T ss_pred HHHHHHh
Confidence 7776553
No 349
>KOG2396|consensus
Probab=90.69 E-value=2.8 Score=37.90 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=58.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN-YVSAEADCTASLKLDNTYVKAYQR 205 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~ 205 (270)
|.+-....-+.+.+.+--..|.+++...|+++++|..-|.-.+..+. .+.|...+.++|..+|++++.|..
T Consensus 108 W~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 108 WLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 44444444455668888899999999999999999999987777776 899999999999999999876543
No 350
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=90.58 E-value=8.5 Score=34.02 Aligned_cols=62 Identities=11% Similarity=0.037 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHH--ccCHHHHHHHHHHHHh
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA--VFFANRALCFLK--MKNYVSAEADCTASLK 194 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~--~~~~~~a~~~~~--~~~~~~A~~~~~~al~ 194 (270)
......+..+|+.++|..|...+...+..-|... ..+..++.+|.. .-++.+|...+++.+.
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4566778899999999999999999988644443 356666655544 5678888888887664
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.47 E-value=1.3 Score=37.14 Aligned_cols=59 Identities=17% Similarity=0.057 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKV 226 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 226 (270)
.+.-.|..|+..|.+.+|++.+++++.++|-+...+..+-.++..+|+--.|++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34445677888999999999999999999999999999999999999988888888764
No 352
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=90.35 E-value=1.1 Score=28.94 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
..|..+...|..+=+.|+|++|+.+|.++++.
T Consensus 3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 3 DKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45667788899999999999999999999874
No 353
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.32 E-value=2.4 Score=35.04 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHH
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADC 189 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~ 189 (270)
+.|..++..|+|++|+.+|+.+......+ ..+...+..|...+|+.+..+..+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45555555555555555555554332111 234444445555555555444444
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.04 E-value=3.4 Score=27.45 Aligned_cols=59 Identities=10% Similarity=0.049 Sum_probs=44.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH---HHHHHHHcCCHHHHHHHHHHHH
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR---RAAARRSLNHFEDARKDILKVL 227 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~---~g~~~~~~g~~~~A~~~~~~al 227 (270)
....|+-++..++.++|+..+++++.-.++....+.. +..+|...|+|+++++.-.+=+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666778889999999999999888776655444 4566788999998887654443
No 355
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.61 E-value=0.65 Score=41.05 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH--------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASL--------KLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al--------~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
+...+..++.-+|||..|+...+..= ..-+.+...+|..|.+|..+++|.+|++.|..+|-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788999999998765421 11235677899999999999999999999998864
No 356
>KOG0686|consensus
Probab=89.59 E-value=3.5 Score=36.28 Aligned_cols=109 Identities=16% Similarity=0.100 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLD--------NTYVKA 202 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a 202 (270)
.+.+.|.-|...|+++.|++.|.++-+++-.. ...+.|.-.+-..+++|........++...- .-.++.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 45677999999999999999999977765443 4567777778888999988888777777651 123456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCCHHHHHHHHH
Q psy6284 203 YQRRAAARRSLNHFEDARKDILKVLA--------LEPNNKQAEIELAE 242 (270)
Q Consensus 203 ~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~a~~~l~~ 242 (270)
....|.+.+.+++|..|.++|-.+.- +.|.|..++..|-.
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcA 279 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCA 279 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHh
Confidence 77788999999999999998865532 23556666655543
No 357
>KOG2300|consensus
Probab=89.54 E-value=12 Score=34.03 Aligned_cols=91 Identities=15% Similarity=-0.003 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC---CCC----HHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCC---
Q psy6284 132 AVYSKEQGNKLV-KEGKWGEAIEKYNVAIQTY---PHD----AVFFANRALCFLKMK-NYVSAEADCTASLKLDNTY--- 199 (270)
Q Consensus 132 a~~~~~~g~~~~-~~g~~~~A~~~y~~al~~~---p~~----~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~--- 199 (270)
|....+.|..++ -..+++.|..++++|..+. |.+ ..++..++.||.... .+..|...+++++++....
T Consensus 46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w 125 (629)
T KOG2300|consen 46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW 125 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh
Confidence 344444554443 3556666666666666542 222 235556666666655 5666666666666665433
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHH
Q psy6284 200 -VKAYQRRAAARRSLNHFEDARKD 222 (270)
Q Consensus 200 -~~a~~~~g~~~~~~g~~~~A~~~ 222 (270)
-+..+.++..+.-..++..|++.
T Consensus 126 sckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 126 SCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred hHHHHHHHHHHHhhhccchhHHHH
Confidence 24455566666666666666665
No 358
>KOG1258|consensus
Probab=89.09 E-value=19 Score=33.39 Aligned_cols=119 Identities=10% Similarity=0.013 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHc
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-DNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~~~~~~ 213 (270)
|..-...-...|++......|++++--+......|.+.+.-....|+.+-|-..+.++.++ .|..+..+..-+..--..
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 4444455567899999999999999888888889999988888888888888777777765 466777777778778888
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a 253 (270)
|++..|...++++..--|+...+-..-.....+.|+..-+
T Consensus 380 ~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~ 419 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDA 419 (577)
T ss_pred ccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhh
Confidence 9999999999999887788887777777777777765444
No 359
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=88.77 E-value=11 Score=33.58 Aligned_cols=126 Identities=21% Similarity=0.200 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH--------HH--------HHHHHHHH-HHccC-----HHHH
Q psy6284 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA--------VF--------FANRALCF-LKMKN-----YVSA 185 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~--------~~--------~~~~a~~~-~~~~~-----~~~A 185 (270)
.+.......+.|..++..|+|.+|+..|+.+|-.-|-.. .+ -|-+|+-. +..+. .++.
T Consensus 200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~ 279 (422)
T PF06957_consen 200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ 279 (422)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence 344444566789999999999999999999987633211 11 22233221 11111 2222
Q ss_pred HHHHHH-----HHhcCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284 186 EADCTA-----SLKLDNTYVKAYQRRAAAR-RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 186 ~~~~~~-----al~~~p~~~~a~~~~g~~~-~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a 253 (270)
...++- ...+.|.+...-++.|+.. ++.++|..|-...++.|+++|....+......+..--.+...+
T Consensus 280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~qArKil~~~e~~~tDa 353 (422)
T PF06957_consen 280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQARKILQACERNPTDA 353 (422)
T ss_dssp HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHHHHHHHHHHCCS--BS
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 222222 2245566655566666664 5799999999999999999999876655444444333343333
No 360
>KOG0546|consensus
Probab=88.73 E-value=0.39 Score=41.15 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
..+.+..-++.+.+..|+..-..+++.++....+++.++..+..+.++++|+++...+....|++....-.+..+-....
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~ 357 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK 357 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence 34466777888999999988888888888899999999999999999999999999999999998876666555544443
Q ss_pred C
Q psy6284 215 H 215 (270)
Q Consensus 215 ~ 215 (270)
+
T Consensus 358 ~ 358 (372)
T KOG0546|consen 358 Q 358 (372)
T ss_pred H
Confidence 3
No 361
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.73 E-value=1.4 Score=22.89 Aligned_cols=30 Identities=27% Similarity=0.276 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAEL 243 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 243 (270)
|+++.|...|++++...|.+...|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456667777777777777777776665543
No 362
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=88.68 E-value=3.3 Score=33.42 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=37.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy6284 140 NKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY 199 (270)
Q Consensus 140 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (270)
..+.+.+...+||.....-++.+|.+......+=.++.-.|++++|..-|+-+-.+.|++
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 355666666666666666666666665555555555555666666666666666666654
No 363
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=88.55 E-value=13 Score=31.30 Aligned_cols=112 Identities=16% Similarity=0.084 Sum_probs=72.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH---HHccCH----HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCF---LKMKNY----VSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~---~~~~~~----~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
...++..++|++=-..|.+......+ ..+..|..+... +.+... ..-.+.++.=+...|++.-+++.+|..
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 45667778888877777776643222 111112222221 112111 134555566667888888888887777
Q ss_pred HHHcC----------------------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 210 RRSLN----------------------HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 210 ~~~~g----------------------~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
+.... ..+.|..++.+++.++|....+...+..+-..+|.+
T Consensus 87 ~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP 149 (277)
T PF13226_consen 87 WVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEP 149 (277)
T ss_pred HHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCc
Confidence 65432 267799999999999999999999999888777765
No 364
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.01 E-value=3.5 Score=32.15 Aligned_cols=89 Identities=10% Similarity=-0.017 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHH-
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT---YVKAYQRRAAARRSLNHFEDARKDILKVLALE--PNNKQAEIEL- 240 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~l- 240 (270)
.++..+|..|.+.|++++|+.+|.++...... -...++++-.+....+++......+.++-.+- +++......+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 57889999999999999999999998876532 34577888888899999999999999886653 3344333322
Q ss_pred ---HHHHHHhCCCCCcch
Q psy6284 241 ---AELNRKLNIPLSPIK 255 (270)
Q Consensus 241 ---~~~~~~~~~~~~a~~ 255 (270)
+......+++..+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~ 134 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAE 134 (177)
T ss_pred HHHHHHHHHhchHHHHHH
Confidence 222334466666555
No 365
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=87.85 E-value=1.7 Score=28.78 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
.|..+..++..+=+.|+|++|+.+|..+++.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3556777888999999999999999999975
No 366
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.79 E-value=1.8 Score=38.22 Aligned_cols=77 Identities=12% Similarity=0.095 Sum_probs=58.7
Q ss_pred ccCHHHHHHHHHHHHhcCC-CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 179 MKNYVSAEADCTASLKLDN-TY----------VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 179 ~~~~~~A~~~~~~al~~~p-~~----------~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
.|+|..|++.|.+...+.. .. +..--.+..||..+++.+-|+..-.++|-+||....-....+.|.+.+
T Consensus 196 a~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~L 275 (569)
T PF15015_consen 196 AGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRL 275 (569)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHH
Confidence 4455555555555544332 11 112345788999999999999999999999999999999999999999
Q ss_pred CCCCCcch
Q psy6284 248 NIPLSPIK 255 (270)
Q Consensus 248 ~~~~~a~~ 255 (270)
..+.+|.+
T Consensus 276 eRy~eAar 283 (569)
T PF15015_consen 276 ERYSEAAR 283 (569)
T ss_pred HHHHHHHH
Confidence 99888876
No 367
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=87.30 E-value=1.4 Score=37.47 Aligned_cols=72 Identities=13% Similarity=0.214 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFAN-RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 205 (270)
.|.+-++-.-+.|-|.+--..|.+++...|.++++|.. -+.=+...++++.+...+.+++.++|.++..|+.
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 34444555556677888888999999999999999887 3455667899999999999999999999876653
No 368
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=87.29 E-value=1.7 Score=28.86 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
.+..+..+|..+=+.|+|++|+.+|.++|+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456777888889999999999999988874
No 369
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=87.09 E-value=2.1 Score=22.21 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284 146 GKWGEAIEKYNVAIQTYPHDAVFFANRA 173 (270)
Q Consensus 146 g~~~~A~~~y~~al~~~p~~~~~~~~~a 173 (270)
|+++.|...|++++...|.++.+|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4566667777777777776666666554
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.76 E-value=29 Score=32.85 Aligned_cols=114 Identities=11% Similarity=-0.026 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC--H----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----
Q psy6284 130 ASAVYSKEQGNKLV-KEGKWGEAIEKYNVAIQTYPHD--A----VFFANRALCFLKMKNYVSAEADCTASLKLDNT---- 198 (270)
Q Consensus 130 ~~a~~~~~~g~~~~-~~g~~~~A~~~y~~al~~~p~~--~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---- 198 (270)
..+...++.|..++ ...+++.|..++.+++.+...+ . .+-+.++.++.+.+... |...+++++.....
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 34566778888888 6789999999999999886432 2 24455677777766666 99999999976544
Q ss_pred CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHH
Q psy6284 199 YVKAYQRRAAA--RRSLNHFEDARKDILKVLALE--PNNKQAEIELAELN 244 (270)
Q Consensus 199 ~~~a~~~~g~~--~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~ 244 (270)
...-.|++-.+ +...+++..|++.++....+. +.++.+........
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 33334444322 223379999999999998876 57776665544443
No 371
>KOG0985|consensus
Probab=86.40 E-value=7.1 Score=38.63 Aligned_cols=105 Identities=18% Similarity=0.121 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----------------
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT---------------- 198 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------- 198 (270)
....|..+|..|.|+.|--+|... .-|..+|..+..+|+|+.|....++|-...-.
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH
Confidence 446799999999999998888543 45888999999999999999988876543210
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 199 ---------YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 199 ---------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
+..-+-.+-.-|...|-|++-+..++.+|-++..+--....|+.++.+-
T Consensus 1269 QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1269 QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 0111223445577889999999999999999999999999999998764
No 372
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.39 E-value=4.7 Score=32.04 Aligned_cols=55 Identities=18% Similarity=0.063 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhCCCCCc
Q psy6284 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN----NKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~a~~~l~~~~~~~~~~~~a 253 (270)
+.+...+.+|..|. ..+.++|+..+.++|++.+. |+++...|+.++..+|++..|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45566666665443 55677777777777776544 367777777777777776554
No 373
>KOG1914|consensus
Probab=86.21 E-value=5.6 Score=36.39 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284 147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASL 193 (270)
Q Consensus 147 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 193 (270)
.+++....|++.+...|..+.+|..-...-+..++|+.....|.+||
T Consensus 34 ~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 66666666666666666666666655555556666666666666655
No 374
>KOG2581|consensus
Probab=86.17 E-value=14 Score=32.62 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh--cCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLK--LDN--TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK 234 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 234 (270)
.+.+.+-.+|+..+.|+.|.....++.- ... ......|.+|.+..-+++|..|.++|-+|+...|++.
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 4555566788888999999887777652 122 3455678899999999999999999999999999843
No 375
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=86.14 E-value=6.5 Score=27.86 Aligned_cols=54 Identities=17% Similarity=0.116 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q psy6284 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN 181 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~ 181 (270)
+...+......|...+-.|||..|.+...++-+..+.....|..-|.+-..+||
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 445677788889999999999999999999976655555555555555444443
No 376
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.83 E-value=21 Score=33.76 Aligned_cols=92 Identities=12% Similarity=0.051 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCC-------------------HHHHHHHHHHHHHccCHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTY-------PHD-------------------AVFFANRALCFLKMKNYVSAE 186 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~-------p~~-------------------~~~~~~~a~~~~~~~~~~~A~ 186 (270)
..+.--|......+..+.|.+++.++++.- +.. ..+.+..+.+.+-++++..|.
T Consensus 302 L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~ 381 (608)
T PF10345_consen 302 LVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKAT 381 (608)
T ss_pred HHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 345556888888888878888888888641 111 135677888888899999999
Q ss_pred HHHHHHHhcC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 187 ADCTASLKLD---N------TYVKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 187 ~~~~~al~~~---p------~~~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
.....+.... | ..+..+|..|..+...|+.+.|...|.
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 382 QELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 8888777553 2 247789999999999999999999998
No 377
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=85.73 E-value=2.7 Score=27.64 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
..+..+..+|...=..|+|++|+.+|..+++.
T Consensus 4 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 4 QKAIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667788888889999999999999998874
No 378
>KOG1839|consensus
Probab=84.54 E-value=3.1 Score=41.71 Aligned_cols=126 Identities=21% Similarity=0.160 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHH------HHHHHH-hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIE------KYNVAI-QTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD------ 196 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~------~y~~al-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------ 196 (270)
..+....+.|......+.+.+|.+ .+.... .+.|..+..|..++..+.+++++++|+..+.++..+.
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 346667788888888899998887 444222 2467778899999999999999999999998887653
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 197 --NTYVKAYQRRAAARRSLNHFEDARKDILKVLAL--------EPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 197 --p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|+....+-+++...+..++...|+..+.+++.+ .|.-.....+++.++.-++.+.-+++
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~ 1078 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALR 1078 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHH
Confidence 345667888888888899999999999988775 34444555666666555555544443
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.47 E-value=2.2 Score=24.91 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=23.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
.+++|.+|..+|+++.|...+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 46899999999999999999999995
No 380
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=84.44 E-value=2.6 Score=27.79 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
.+..+..+|...=..|+|++|+..|..+++.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 4556777788888889999999999999985
No 381
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=83.92 E-value=3.6 Score=26.99 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
..|..+..+|..+=..|++++|+.+|..+++.
T Consensus 6 ~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 6 SKAKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556777788888889999999999888874
No 382
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=83.88 E-value=25 Score=31.01 Aligned_cols=56 Identities=5% Similarity=-0.085 Sum_probs=42.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHH--ccCHHHHHHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-----DAVFFANRALCFLK--MKNYVSAEADCT 190 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-----~~~~~~~~a~~~~~--~~~~~~A~~~~~ 190 (270)
....+..+|+.++|..|...|..++...+. ....+..++.+|.. .=++++|...++
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 344677899999999999999999987542 24566777777655 557788888887
No 383
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=83.82 E-value=14 Score=26.87 Aligned_cols=96 Identities=18% Similarity=0.058 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C----------HHHHHHHHHHHHHccCHHHHHHHHH----HHHhc
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-----D----------AVFFANRALCFLKMKNYVSAEADCT----ASLKL 195 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-----~----------~~~~~~~a~~~~~~~~~~~A~~~~~----~al~~ 195 (270)
....|+..++.+++-.++-+|++|+.+..+ . +...-|+|..+..+|+.+=.+.+++ +++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 445689999999999999999999986321 1 3467889999999999887777664 55667
Q ss_pred CCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284 196 DNTYVKAYQRRAAA-RRSLNHFEDARKDILKVLALEPNNKQA 236 (270)
Q Consensus 196 ~p~~~~a~~~~g~~-~~~~g~~~~A~~~~~~al~~~p~~~~a 236 (270)
-|..+.... .+ --.+|.-..|+-+| ++..|+-.-|
T Consensus 84 iPQCp~~~C---~afi~sLGCCk~ALl~F---~KRHPNP~iA 119 (140)
T PF10952_consen 84 IPQCPNTEC---EAFIDSLGCCKKALLDF---MKRHPNPEIA 119 (140)
T ss_pred ccCCCCcch---HHHHHhhhccHHHHHHH---HHhCCCHHHH
Confidence 675433211 11 12456666676665 5677764433
No 384
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=83.70 E-value=2.7 Score=27.69 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
..|..+..+|...=..|+|++|+.+|..+|+.
T Consensus 4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34566777888888999999999999998874
No 385
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.70 E-value=4.5 Score=32.14 Aligned_cols=70 Identities=17% Similarity=0.149 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHH
Q psy6284 149 GEAIEKYNVAIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT----YVKAYQRRAAARRSLNHFEDAR 220 (270)
Q Consensus 149 ~~A~~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~~g~~~~A~ 220 (270)
++|...|-++- -.| +++...+.+|..|. ..+.++|+..+.+++++.+. ++..+..++.++..+|+++.|.
T Consensus 123 ~~A~~~fL~~E-~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLE-GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHc-CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 67777775542 233 46788888887664 77889999999999987543 5889999999999999999885
No 386
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=83.58 E-value=3.1 Score=33.87 Aligned_cols=107 Identities=17% Similarity=0.081 Sum_probs=61.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC---CCC---------HHHHHHHHHHHHHccCH-HHH-HHHHHHHHh--cCCCCHHH--
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTY---PHD---------AVFFANRALCFLKMKNY-VSA-EADCTASLK--LDNTYVKA-- 202 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~---p~~---------~~~~~~~a~~~~~~~~~-~~A-~~~~~~al~--~~p~~~~a-- 202 (270)
.+|..|+|+.|+....-||+.+ |+. .+-...-+......|.. +-. ...+..+.. --|+-..|
T Consensus 92 W~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl 171 (230)
T PHA02537 92 WRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKL 171 (230)
T ss_pred eeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHH
Confidence 3478899999999999999874 332 12233333444445542 111 112222221 11343333
Q ss_pred HHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 203 YQRRAAARR---------SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 203 ~~~~g~~~~---------~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
|-..|.++. ..++...|+..+++|+.+||. .-+...+..+...+.
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr 225 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHh
Confidence 444566563 456888999999999999965 344444555555544
No 387
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=82.44 E-value=8.5 Score=27.97 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQT-------YPHDA----VFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~-------~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
+--.+..+...|+|++++..-.++|.+ +.+.. .+-+++|.++-.+|+.++|+..|+.+-+
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 334566777889999888777777754 44443 4667899999999999999999988765
No 388
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=82.15 E-value=4.7 Score=26.35 Aligned_cols=31 Identities=29% Similarity=0.319 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
.+..+...|...=..|+|++|+.+|..+++.
T Consensus 5 ~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 5 QAKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455667788888889999999999988874
No 389
>KOG2041|consensus
Probab=82.09 E-value=7.8 Score=36.72 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.+.+.|..++....|++|.++|.++-. .-+...|++++..|++ ++.+...-|++.+.+-.+|.++...
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhh
Confidence 344555556666666666666654422 2234455555555544 2333344567777777777777777
Q ss_pred CCHHHHHHHHHH
Q psy6284 214 NHFEDARKDILK 225 (270)
Q Consensus 214 g~~~~A~~~~~~ 225 (270)
|--++|.+.|-+
T Consensus 866 GMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 866 GMCDQAVEAYLR 877 (1189)
T ss_pred chHHHHHHHHHh
Confidence 777777776643
No 390
>PF12854 PPR_1: PPR repeat
Probab=81.85 E-value=4.9 Score=21.73 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 199 YVKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 199 ~~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
+...|..+-..+++.|+.++|.+.|+
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34455666666667777777766665
No 391
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=81.51 E-value=15 Score=36.50 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHH
Q psy6284 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN-----HFEDAR 220 (270)
Q Consensus 146 g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g-----~~~~A~ 220 (270)
..+.+|+..|.+.- -.|.-|.-|...|++|..+++|++=+.++.-|++..|.++..-...-.+-+++. +-..|+
T Consensus 533 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (932)
T PRK13184 533 RDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL 611 (932)
T ss_pred HHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777877777643 356677889999999999999999999999999999988765443333332222 334566
Q ss_pred HHHHHHHhhCCCCHHHHH
Q psy6284 221 KDILKVLALEPNNKQAEI 238 (270)
Q Consensus 221 ~~~~~al~~~p~~~~a~~ 238 (270)
...--++..-|.......
T Consensus 612 ~~~~~~~~~~~~~~~~~~ 629 (932)
T PRK13184 612 VFMLLALWIAPEKISSRE 629 (932)
T ss_pred HHHHHHHHhCcccccchH
Confidence 777778888887665544
No 392
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=81.39 E-value=4.2 Score=26.79 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
..|..+..+|...=..|+|++|+.+|..+|+.
T Consensus 4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34556777788888889999999999998874
No 393
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.82 E-value=4.6 Score=36.49 Aligned_cols=98 Identities=12% Similarity=0.115 Sum_probs=71.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFE 217 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~ 217 (270)
.+...-..|+|+.|......+-..-.....+.-.+-.-..+++++++|.....-.+...-..++...-.|.....+|-++
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d 408 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD 408 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence 34555667888888777655544433333334344455568999999999888888777677777777777778889999
Q ss_pred HHHHHHHHHHhhCCCCHH
Q psy6284 218 DARKDILKVLALEPNNKQ 235 (270)
Q Consensus 218 ~A~~~~~~al~~~p~~~~ 235 (270)
+|.-.+++++.++|....
T Consensus 409 ~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 409 KSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHHHHHhccCChhcc
Confidence 999999999999986443
No 394
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=80.60 E-value=6.5 Score=20.63 Aligned_cols=28 Identities=25% Similarity=0.058 Sum_probs=17.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 220 RKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 220 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
++....++..+|.|-.+|..+..+...+
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 4455666666777777776666665543
No 395
>KOG1839|consensus
Probab=80.27 E-value=7.6 Score=39.16 Aligned_cols=101 Identities=19% Similarity=0.128 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--------PHDAVFFANRALCFLKMKNYVSAEADCTASLKL------ 195 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 195 (270)
+.+..+...+..+.+.|++++|+..-.++.-+. |+....|.+++...+..+....|+..+.++..+
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~g 1050 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSG 1050 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccC
Confidence 456677888999999999999999887776542 445678999999999999999999999888865
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy6284 196 --DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230 (270)
Q Consensus 196 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~ 230 (270)
.|.-.....+++.++..+++++.|+...+.|++.+
T Consensus 1051 e~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1051 EDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred CCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34445566788888999999999999999999865
No 396
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=79.34 E-value=21 Score=32.29 Aligned_cols=55 Identities=15% Similarity=-0.008 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284 164 HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKV 226 (270)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 226 (270)
.++...+.+|+ ++|+++.|.+.+ ...++..-|-++|.+....|+++-|.++|+++
T Consensus 319 ~D~~~rFeLAl---~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 319 TDPDHRFELAL---QLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp S-HHHHHHHHH---HCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred CChHHHhHHHH---hcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 34455665553 577777776643 33346778888888888888888888888765
No 397
>KOG0890|consensus
Probab=78.93 E-value=37 Score=36.85 Aligned_cols=110 Identities=15% Similarity=0.024 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC----------C
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-NT----------Y 199 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~----------~ 199 (270)
.++.|.+.+....+.|.++.|....-.|.+.. -+.++..+|..+...|+-..|+...++.+..+ |+ .
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 36678888999999999999999998888766 67789999999999999999999999999654 22 1
Q ss_pred ------HHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284 200 ------VKAYQRRAAARRSLNHFE--DARKDILKVLALEPNNKQAEIELAE 242 (270)
Q Consensus 200 ------~~a~~~~g~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~l~~ 242 (270)
.++.+..+.-....++++ +-++.|+.+.+++|....-++.++.
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHH
Confidence 234444555555556543 4588999999999977766666663
No 398
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.67 E-value=11 Score=30.61 Aligned_cols=58 Identities=14% Similarity=0.048 Sum_probs=37.6
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284 176 FLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 176 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 233 (270)
+++-+...+|+...+.-++.+|.+......+-+.++-.|+|++|..-++-+-++.|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 3455566666666666666666666666666666666666666666666666666665
No 399
>KOG3783|consensus
Probab=78.60 E-value=24 Score=32.37 Aligned_cols=68 Identities=13% Similarity=0.072 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CC-CCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKL------DN-TYVKAYQRRAAARRSLNH-FEDARKDILKVLALEPNN 233 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p-~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~ 233 (270)
..-++.+|.++..+|+...|..+|..+++- ++ -.+.|+|.+|..+..++. ..+|...+.+|-...-++
T Consensus 449 ~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 449 GLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 346778999999999999999999888732 22 246799999999999999 999999999998776443
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.16 E-value=16 Score=28.77 Aligned_cols=51 Identities=24% Similarity=0.143 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~ 233 (270)
.+..++..++.+...| ++..+.+++.++...|+.++|.....++..+-|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 3455666777777777 67788888999999999999999999999998844
No 401
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=77.94 E-value=28 Score=31.51 Aligned_cols=52 Identities=15% Similarity=-0.022 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASL 193 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 193 (270)
.+-....+.|+++.|.+.. ...+++..|-.+|...+.+|+++-|..+|.++-
T Consensus 323 ~rFeLAl~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 323 HRFELALQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHhHHHHhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 3455566778877776542 234467788888888888899888888887754
No 402
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=77.07 E-value=29 Score=28.54 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNT------YVKAYQRRAAARRSLNHFEDARKDILKV 226 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~a~~~~g~~~~~~g~~~~A~~~~~~a 226 (270)
.+...+|.-|+..|+++.|+..++.+...... .......+..|+..+|+.++.+...-+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45667899999999999999999998755321 1345667788888888888887665443
No 403
>PF15469 Sec5: Exocyst complex component Sec5
Probab=76.76 E-value=33 Score=26.66 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=43.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR 220 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~ 220 (270)
.+.+.|+|+.++..|.+|..+...... .....-.-..+.+..+..+.+.+.. .........++..
T Consensus 95 ~~i~~~dy~~~i~dY~kak~l~~~~~~---~~~vf~~v~~eve~ii~~~r~~l~~------------~L~~~~~s~~~~~ 159 (182)
T PF15469_consen 95 ECIKKGDYDQAINDYKKAKSLFEKYKQ---QVPVFQKVWSEVEKIIEEFREKLWE------------KLLSPPSSQEEFL 159 (182)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHH------------HHhCCCCCHHHHH
Confidence 335678888888888888765322210 0001111122223333333322211 1111115667777
Q ss_pred HHHHHHHhhCCCCHHHHHHH
Q psy6284 221 KDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 221 ~~~~~al~~~p~~~~a~~~l 240 (270)
..+...++++|+...+|..+
T Consensus 160 ~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 160 KLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHhCCCCCCHHHHHH
Confidence 77788888888766666654
No 404
>KOG0292|consensus
Probab=76.75 E-value=81 Score=31.13 Aligned_cols=124 Identities=25% Similarity=0.218 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------HHH--HHH------HHHHH------HHccCHHHH--HH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD--------AVF--FAN------RALCF------LKMKNYVSA--EA 187 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~--------~~~--~~~------~a~~~------~~~~~~~~A--~~ 187 (270)
...-.+.|..+...|++.+|++.|..+|-.-|-. ..+ +.. .|+.. +.....+.+ +.
T Consensus 991 l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElA 1070 (1202)
T KOG0292|consen 991 LNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELA 1070 (1202)
T ss_pred HHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHH
Confidence 4455678999999999999999999998654421 111 111 11111 011234444 33
Q ss_pred HHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 188 DCTASLKLDNTYVK-AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 188 ~~~~al~~~p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|-.-..+.|-+.- ++...-.+.++++++..|-....+.+++.|..+.|..........-.++..+..
T Consensus 1071 aYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~~a~eknp~Da~~ 1139 (1202)
T KOG0292|consen 1071 AYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIKQAAEKNPTDAYE 1139 (1202)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCcccccc
Confidence 34344456665544 444444567899999999999999999999998888777766665556555443
No 405
>KOG1463|consensus
Probab=76.43 E-value=14 Score=32.01 Aligned_cols=110 Identities=22% Similarity=0.198 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CC---HHHHHHHHHHHHHccCHHHH--HHHHHHHHhcCCCCHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP---HD---AVFFANRALCFLKMKNYVSA--EADCTASLKLDNTYVKAY 203 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p---~~---~~~~~~~a~~~~~~~~~~~A--~~~~~~al~~~p~~~~a~ 203 (270)
+..-.+.|..+....||..|-.+|=+|++-.. ++ ..++-.+-+|...++..++. +-.-..+++.+.....|.
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Am 288 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAM 288 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHH
Confidence 33445667777788999999999999987421 11 33444555677777777764 444566778788888999
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 204 QRRAAARR--SLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 204 ~~~g~~~~--~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
...|.++. .+.+|+.|+..|..=|.-| +-+..++..++
T Consensus 289 kavAeA~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Ly 328 (411)
T KOG1463|consen 289 KAVAEAFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLY 328 (411)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHH
Confidence 99999885 4778999999999888655 55555555554
No 406
>KOG3807|consensus
Probab=76.34 E-value=35 Score=29.55 Aligned_cols=89 Identities=22% Similarity=0.136 Sum_probs=58.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----------------------C
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-----------------------N 197 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------------------p 197 (270)
...+..+..+-|..-..|++++|.-..+|..+|.- ..--..+|...+.++++.- .
T Consensus 193 ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRD 270 (556)
T KOG3807|consen 193 KAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRD 270 (556)
T ss_pred HHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcc
Confidence 34556677777788888889998888888777642 1222334444554444321 0
Q ss_pred CCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284 198 TYVK--AYQRRAAARRSLNHFEDARKDILKVLALEP 231 (270)
Q Consensus 198 ~~~~--a~~~~g~~~~~~g~~~~A~~~~~~al~~~p 231 (270)
.+.. .-.++|+|..++|+..+|++.|+...+--|
T Consensus 271 tnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 271 TNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred cchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 1222 335678999999999999999998877666
No 407
>KOG1464|consensus
Probab=75.66 E-value=9.9 Score=31.87 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=40.7
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 143 VKEGKWGEAIEKYNVAIQTYPHDA----VFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 143 ~~~g~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
++..+.++|+..|.+++++.+... .++-.+--+++++++|++....|.+.+.
T Consensus 38 l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 38 LKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 345588899999999999887653 4666666778888999998888888774
No 408
>KOG4459|consensus
Probab=75.56 E-value=22 Score=31.91 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----CC-------------H---HHHHHHHHHH-HHccCHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYP----HD-------------A---VFFANRALCF-LKMKNYVSAEADCTAS 192 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p----~~-------------~---~~~~~~a~~~-~~~~~~~~A~~~~~~a 192 (270)
..+..|...+..++|.+++.++.+||+..- +. + ...-.-|.++ ..-|.+-+-..+..++
T Consensus 33 ~ay~~gl~~y~~~~w~~~v~~le~ALr~~~~~~~~~~~Cr~~C~g~~~~~e~~~~~~s~~~~~~a~fg~~le~a~Cl~rC 112 (471)
T KOG4459|consen 33 LAYSHGLESYEEENWPEAVRFLERALRLFRALRDSEAFCRTNCEGPAQLPEPEAGSASFGGLYLAIFGHLLERAACLRRC 112 (471)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHhhhHHHHHhhccCcccCCCchhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999987410 00 0 0000000000 0112222333333333
Q ss_pred H---hcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 193 L---KLDNTY----------VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 193 l---~~~p~~----------~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
. .-.|.. ...|.++=.+|++.|+..+|++.-...+-.+|++..+..++..=...+|.....+.
T Consensus 113 kg~~~~~~~~~~~~~~df~~r~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~d~l~ 188 (471)
T KOG4459|consen 113 KGELAARHGSDRSPYLDFRPRLPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSEDELT 188 (471)
T ss_pred hcccccCCCcccchhhhhccchHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCccccc
Confidence 3 222222 25778888999999999999999999999999999999999987777777655443
No 409
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=74.97 E-value=32 Score=25.64 Aligned_cols=61 Identities=15% Similarity=0.066 Sum_probs=39.6
Q ss_pred HHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 169 FANRALCFL-KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 169 ~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
|..+|+-.+ ..+.-++-...+....+.+..++..++.+|.+|.++|+..+|-+.+.+|.+-
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 555555443 4455555555556666666778999999999999999999999999988764
No 410
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=74.44 E-value=11 Score=34.03 Aligned_cols=67 Identities=15% Similarity=0.105 Sum_probs=55.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHH
Q psy6284 119 SDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSA 185 (270)
Q Consensus 119 ~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A 185 (270)
.+....-++...-+...++++...|.+|+|.-+.+..++++-.+|.+..+....|.|+-++|--.|+
T Consensus 439 ~d~a~ryV~amGGadrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 439 VDSAKRYVEAMGGADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred hHhHHHHHHHhccHHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 3334444555666788899999999999999999999999999999999999999999888865543
No 411
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=74.34 E-value=20 Score=23.59 Aligned_cols=37 Identities=14% Similarity=-0.115 Sum_probs=16.8
Q ss_pred HHHHHHHccCHHHHHHHHH-------HHHhcCCCCHHHHHHHHH
Q psy6284 172 RALCFLKMKNYVSAEADCT-------ASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 172 ~a~~~~~~~~~~~A~~~~~-------~al~~~p~~~~a~~~~g~ 208 (270)
+|.-+-+.|++.+|+.+|+ +++...|+++.....+..
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~k 55 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQM 55 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 3333334455554444444 344455665554443333
No 412
>KOG2422|consensus
Probab=74.34 E-value=76 Score=29.65 Aligned_cols=96 Identities=17% Similarity=0.118 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHH-HHHHHccCHHHHHHHHHHH-----HhcCCCCHHHHHHHHH
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPH-DAVFFANRA-LCFLKMKNYVSAEADCTAS-----LKLDNTYVKAYQRRAA 208 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~-~~~~~~~~a-~~~~~~~~~~~A~~~~~~a-----l~~~p~~~~a~~~~g~ 208 (270)
+..-..+.++|-+..|.+..+-.++++|. ++.+...+- ...++..+|+=-|+.++.. +.+-|+.. ....+|.
T Consensus 346 ~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~ 424 (665)
T KOG2422|consen 346 FRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALAR 424 (665)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHH
Confidence 33444556889999999999999999998 765433322 2334455565555555444 33334332 2233444
Q ss_pred HHHHcCC---HHHHHHHHHHHHhhCCC
Q psy6284 209 ARRSLNH---FEDARKDILKVLALEPN 232 (270)
Q Consensus 209 ~~~~~g~---~~~A~~~~~~al~~~p~ 232 (270)
.|..... -..|...+.+|++..|.
T Consensus 425 f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 425 FFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 4545444 56789999999998874
No 413
>PF12854 PPR_1: PPR repeat
Probab=74.31 E-value=9 Score=20.64 Aligned_cols=27 Identities=15% Similarity=-0.028 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6284 165 DAVFFANRALCFLKMKNYVSAEADCTA 191 (270)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~ 191 (270)
|...|..+-.+|.+.|+.++|++.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445667777777788888888887764
No 414
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=74.08 E-value=11 Score=25.10 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
..|..+.++|..+=..|+.++|+.+|++++..
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 34555666666666666677777777666653
No 415
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.65 E-value=96 Score=30.50 Aligned_cols=115 Identities=16% Similarity=-0.029 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH--D-------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY----- 199 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~--~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----- 199 (270)
-..-.+.......+|.+|-....++-..-+. . ...--.+|.+....+++++|+..++.++..-|.+
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 3455678888899999999888887765444 1 2455567888888999999999999999877643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHH--HHHHHHhC
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLAL----EPNNKQAEIEL--AELNRKLN 248 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~l--~~~~~~~~ 248 (270)
..++...|.+..-.|++++|+.....+.++ +--.-.++..+ +.+....|
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 457778899999999999999999988887 33333444433 44455566
No 416
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.64 E-value=68 Score=31.47 Aligned_cols=83 Identities=11% Similarity=0.031 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCC--HH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-----AVFFANRALCFLKMKNYVSAEADCTASLKL----DNTY--VK 201 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~--~~ 201 (270)
+..--+|.+...+|+++.|++..+.++..-|.+ ..++...|.+..-.|++.+|......+.++ +..+ ..
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~ 538 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW 538 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 334446888899999999999999999998875 568999999999999999999998888876 3322 33
Q ss_pred HHHHHHHHHHHcCC
Q psy6284 202 AYQRRAAARRSLNH 215 (270)
Q Consensus 202 a~~~~g~~~~~~g~ 215 (270)
+.+..+.++..+|+
T Consensus 539 ~~~~~s~il~~qGq 552 (894)
T COG2909 539 SLLQQSEILEAQGQ 552 (894)
T ss_pred HHHHHHHHHHHhhH
Confidence 45556777888883
No 417
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=73.62 E-value=5 Score=33.33 Aligned_cols=93 Identities=16% Similarity=0.086 Sum_probs=64.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----------ccCHHHHHHHHHHHHhcCCCC------HHHH
Q psy6284 140 NKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----------MKNYVSAEADCTASLKLDNTY------VKAY 203 (270)
Q Consensus 140 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----------~~~~~~A~~~~~~al~~~p~~------~~a~ 203 (270)
..++..++.-.|+..|...+.-.|.+..+..--+.|..+ --....|.+..++|+...... .-+-
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~ 82 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVN 82 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeeh
Confidence 345666777788888888888788774333222322221 233567888888888664321 2357
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 204 QRRAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 204 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
++++.+++.+.+|+.|..+|..|+.+--+
T Consensus 83 ~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~ 111 (368)
T COG5091 83 FRYFVHFFNIKDYELAQSYFKKAKNLYVD 111 (368)
T ss_pred hhhHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 78899999999999999999999987543
No 418
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.30 E-value=8.5 Score=25.36 Aligned_cols=32 Identities=16% Similarity=-0.072 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 148 WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 148 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
.++|+...++|++.+ ..|+|++|+..|..+++
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale 34 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHH
Confidence 455666666665443 46677777777777665
No 419
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=72.41 E-value=70 Score=30.01 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=60.9
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy6284 143 VKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222 (270)
Q Consensus 143 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 222 (270)
.++...+.+....+.-+.-........+..|..+-..+..++|..+|++.+..+|+ .+++..|.-+.+.|-...|...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Confidence 34444555555544433333344556667777777888899999999999999888 6788888888888888888887
Q ss_pred HHHHHhhCCCC
Q psy6284 223 ILKVLALEPNN 233 (270)
Q Consensus 223 ~~~al~~~p~~ 233 (270)
++ ++.|.-
T Consensus 97 ~~---~~~~~~ 104 (578)
T PRK15490 97 LK---KVSNGV 104 (578)
T ss_pred HH---HhCccH
Confidence 77 445553
No 420
>KOG1914|consensus
Probab=71.51 E-value=75 Score=29.49 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=18.5
Q ss_pred CchhhhhhccccccceEEEEecCC
Q psy6284 1 MSAYERVKQWNTFARIWHIYDAKW 24 (270)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~d~~~ 24 (270)
|+++.+.|+|.+.++-|-+.+..-
T Consensus 202 m~AR~~~qel~~lt~GL~r~~~~v 225 (656)
T KOG1914|consen 202 MNARRVYQELQNLTRGLNRNAPAV 225 (656)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCC
Confidence 566666699999998888877763
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.36 E-value=19 Score=28.31 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q psy6284 149 GEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197 (270)
Q Consensus 149 ~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 197 (270)
...+....+.+...| ++..+.+++.++..+|+.++|.....++..+.|
T Consensus 128 ~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344445555566666 667899999999999999999999999999999
No 422
>KOG3783|consensus
Probab=69.26 E-value=33 Score=31.49 Aligned_cols=79 Identities=15% Similarity=0.077 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH-H
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA-A 208 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g-~ 208 (270)
+..+...+..+...|+-+.|+.++..+++..- -....++.+|.++.-+.+|..|...+.........+...|-.++ .
T Consensus 267 a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~c 346 (546)
T KOG3783|consen 267 ALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGC 346 (546)
T ss_pred ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 44566677777888888899999988887111 12458899999999999999999999998887765544444444 4
Q ss_pred HH
Q psy6284 209 AR 210 (270)
Q Consensus 209 ~~ 210 (270)
|+
T Consensus 347 c~ 348 (546)
T KOG3783|consen 347 CL 348 (546)
T ss_pred HH
Confidence 44
No 423
>KOG2561|consensus
Probab=68.21 E-value=87 Score=28.26 Aligned_cols=106 Identities=12% Similarity=0.130 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------CCCCHHHHHHHHHHHHHccCHH--------
Q psy6284 123 EEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----------YPHDAVFFANRALCFLKMKNYV-------- 183 (270)
Q Consensus 123 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----------~p~~~~~~~~~a~~~~~~~~~~-------- 183 (270)
++....+--+..+.++|..+++...|.+|+..+-.|=+. -.+.+..-...-+||+.+++..
T Consensus 154 psE~kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~R 233 (568)
T KOG2561|consen 154 PSEQKALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVR 233 (568)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHH
Confidence 333344555677889999999999999999887665443 2233444555667888876532
Q ss_pred --HHHHHHHHHH--------hcC-CCCH-H-----HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 184 --SAEADCTASL--------KLD-NTYV-K-----AYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 184 --~A~~~~~~al--------~~~-p~~~-~-----a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
.|...|.++. .+. +..+ . .++.-|.+.+..|+-++|.++|+.+..
T Consensus 234 L~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 234 LVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 2333333222 222 1222 2 334458889999999999999987754
No 424
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=66.72 E-value=17 Score=19.65 Aligned_cols=15 Identities=27% Similarity=0.087 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHhh
Q psy6284 215 HFEDARKDILKVLAL 229 (270)
Q Consensus 215 ~~~~A~~~~~~al~~ 229 (270)
++++|+..|+++.+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 356666666666543
No 425
>KOG0276|consensus
Probab=65.74 E-value=76 Score=29.89 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
...|++.|....+.+++..|.++|.++-+
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 34466666666666666666666666544
No 426
>KOG4563|consensus
Probab=65.73 E-value=24 Score=30.73 Aligned_cols=60 Identities=8% Similarity=-0.011 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHccCHHHHHHH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP--------HDAVFFANRALCFLKMKNYVSAEAD 188 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~ 188 (270)
-..+..+...|+.++..++|..|...|..|..+.. .+..+++..|-.++.++++..++..
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556788899999999999999999999998743 2356777788888888777665443
No 427
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=64.62 E-value=18 Score=26.24 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV 167 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~ 167 (270)
.-.+.|..+...|++++|+.+|-+||...|+-..
T Consensus 65 ~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 65 QQVQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 3457799999999999999999999999887544
No 428
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.57 E-value=22 Score=32.35 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
....+|.-.+..|+|.-+.+.+++++-.+|+|..|+...+.++.++|=..++.-
T Consensus 454 rVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~ 507 (655)
T COG2015 454 RVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESAT 507 (655)
T ss_pred HHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccch
Confidence 345677778899999999999999999999999999999999999998776644
No 429
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.55 E-value=71 Score=25.10 Aligned_cols=120 Identities=14% Similarity=-0.035 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHH
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT----YVKAYQRRAAA 209 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~ 209 (270)
+..+..+.+.+..++|+.-|...-+..- .-..+....|.+....|+..+|+..|..+-.-.|. ..-+.++-|.+
T Consensus 62 flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~l 141 (221)
T COG4649 62 FLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYL 141 (221)
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHH
Confidence 3446667788899999999987554332 22457788889999999999999999998766542 23577888889
Q ss_pred HHHcCCHHHHHHHHHHH-HhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 210 RRSLNHFEDARKDILKV-LALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~a-l~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+...|-|++-..-.+.. -.-+|--..+...|+....+.|++..+-.
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~ 188 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKS 188 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHH
Confidence 99999999877666543 23455566889999999999999887765
No 430
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.17 E-value=24 Score=29.72 Aligned_cols=117 Identities=10% Similarity=0.045 Sum_probs=73.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------------HHHHHH-HHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAV-------------FFANRA-LCFLKMKNYVSAEADCTASLKLDNTYVKAY 203 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~-------------~~~~~a-~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 203 (270)
.+..++-..||..|+...+++++.-..+.. .++-.| .++..++++.+++.+.-+-...-.+-+.-.
T Consensus 41 Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkI 120 (309)
T PF07163_consen 41 AADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKI 120 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH
Confidence 377788889999999999999987533322 122233 456778999999888776665544444444
Q ss_pred HHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCHHH--HHHHH-----HHHHHhCCCCCcch
Q psy6284 204 QRRA-AARRSLNHFEDARKDILKVLALEPNNKQA--EIELA-----ELNRKLNIPLSPIK 255 (270)
Q Consensus 204 ~~~g-~~~~~~g~~~~A~~~~~~al~~~p~~~~a--~~~l~-----~~~~~~~~~~~a~~ 255 (270)
..+. ..|.+.+++....+ .-.+.-.+|+|... +..++ .++.-+|...+|..
T Consensus 121 leLCILLysKv~Ep~amle-v~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAee 179 (309)
T PF07163_consen 121 LELCILLYSKVQEPAAMLE-VASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEE 179 (309)
T ss_pred HHHHHHHHHHhcCHHHHHH-HHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHH
Confidence 4444 44567777765554 45566678887533 33333 33444566666554
No 431
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=62.97 E-value=80 Score=27.64 Aligned_cols=46 Identities=13% Similarity=-0.143 Sum_probs=41.4
Q ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6284 180 KNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILK 225 (270)
Q Consensus 180 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 225 (270)
...-+|+..++.++..+|.|....+.+..+|..+|-...|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4466789999999999999999999999999999999999998863
No 432
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=62.89 E-value=20 Score=18.86 Aligned_cols=27 Identities=15% Similarity=-0.069 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHh
Q psy6284 202 AYQRRAAARRSL----NHFEDARKDILKVLA 228 (270)
Q Consensus 202 a~~~~g~~~~~~----g~~~~A~~~~~~al~ 228 (270)
+.+.+|..|..- .+..+|+..|+++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 445555554321 255556666655544
No 433
>KOG0739|consensus
Probab=62.50 E-value=51 Score=28.31 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
+..+..+..++...-+.++|++|+.+|+.+++
T Consensus 7 l~kaI~lv~kA~~eD~a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDEDNAKNYEEALRLYQNALE 38 (439)
T ss_pred HHHHHHHHHHHhhhcchhchHHHHHHHHHHHH
Confidence 33455666777777888999999999988887
No 434
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=62.32 E-value=4.5 Score=28.96 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=14.8
Q ss_pred ccccccceEEEEecCCCC
Q psy6284 9 QWNTFARIWHIYDAKWQN 26 (270)
Q Consensus 9 ~~~~~~~~~~~~d~~~~~ 26 (270)
.|--.+|.|+|.|++|++
T Consensus 43 ~vqLlsR~W~ITd~~g~v 60 (126)
T COG2967 43 PVQLLSRYWLITDGNGRV 60 (126)
T ss_pred cceeeeeEEEEecCCCcE
Confidence 344559999999999986
No 435
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=62.12 E-value=16 Score=18.38 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=7.3
Q ss_pred HHHHHccCHHHHHHHHHH
Q psy6284 174 LCFLKMKNYVSAEADCTA 191 (270)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~ 191 (270)
.+|.+.|++++|...+++
T Consensus 8 ~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 8 SGYCKMGQFEEALEVFDE 25 (31)
T ss_pred HHHHccchHHHHHHHHHH
Confidence 333344444444444433
No 436
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=60.92 E-value=27 Score=22.25 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=9.3
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q psy6284 208 AARRSLNHFEDARKDILKVL 227 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al 227 (270)
.-.-..|++++|+..|..++
T Consensus 13 v~~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 13 VEADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 33334555555555444443
No 437
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=59.99 E-value=34 Score=28.82 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=76.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH------HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH---HH
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCF------LKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA---RR 211 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~------~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~---~~ 211 (270)
..+...+|..-+..-++.++.+|.|...|..+-.|. ..-.++..-.++-..+|..|+.|..||..+-.. .+
T Consensus 119 e~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~ 198 (328)
T COG5536 119 ELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRF 198 (328)
T ss_pred HhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHH
Confidence 334445677777778888899998887777766665 444556666777888889999998888877332 23
Q ss_pred HcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 212 SLNH------FEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 212 ~~g~------~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
..|+ +++-++..-.++-.+|+|..+|.-+..+...
T Consensus 199 ~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 199 NRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred hhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 3333 6777888888899999999999877766543
No 438
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=59.96 E-value=1e+02 Score=25.67 Aligned_cols=93 Identities=14% Similarity=0.045 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHccCHH-HHHHHHHHHHh------cCCCC
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----YPHDAVFFANRALCFLKMKNYV-SAEADCTASLK------LDNTY 199 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----~p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~al~------~~p~~ 199 (270)
.+.+.+-+..+++.|++.-|.+.-.-.++. .+.+....-++..++.....-+ +-....+++++ ..-.+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 345666778888999998887775555543 3445555667777776665322 22233333332 22267
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
+..|..+|..+.+-|++.+|..+|-
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH
Confidence 8999999999999999999998885
No 439
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=59.91 E-value=30 Score=25.14 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=19.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIE 239 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 239 (270)
+|..+...|++++|..+|-+|+..-|+-.+....
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i 102 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQI 102 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 5666666666666666666666666654444333
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.70 E-value=1.3e+02 Score=26.71 Aligned_cols=80 Identities=16% Similarity=0.074 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH--HHHHH--HHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHH
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVK--AYQRR--AAARRSLNHFEDARKDILKVLALEP---NNKQAEIEL 240 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--a~~~~--g~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~l 240 (270)
....++.-++..++|..|...++.+...-|.... .+..+ |.-+-...++++|.+.++.++...- .....+..+
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~ 212 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL 212 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 4455667777899999999999998875333333 34444 4445578899999999999887632 223344444
Q ss_pred HHHHHHh
Q psy6284 241 AELNRKL 247 (270)
Q Consensus 241 ~~~~~~~ 247 (270)
..+...+
T Consensus 213 ~~~~~~~ 219 (379)
T PF09670_consen 213 VEVLKAL 219 (379)
T ss_pred HHHHHHH
Confidence 4444444
No 441
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=59.60 E-value=15 Score=24.13 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=6.4
Q ss_pred cCHHHHHHHHHHHH
Q psy6284 180 KNYVSAEADCTASL 193 (270)
Q Consensus 180 ~~~~~A~~~~~~al 193 (270)
++|++|+.+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444443
No 442
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=59.13 E-value=73 Score=23.81 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=35.4
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284 143 VKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195 (270)
Q Consensus 143 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 195 (270)
.++|+-++--+.++....-...++..+.-+|.+|-++|+..+|-+...+|.+-
T Consensus 97 v~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 97 VKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 45566555555565555445567899999999999999999999998888753
No 443
>KOG0276|consensus
Probab=58.79 E-value=73 Score=30.01 Aligned_cols=69 Identities=19% Similarity=0.109 Sum_probs=44.8
Q ss_pred HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHh
Q psy6284 176 FLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE--------PNNKQAEIELAELNRKL 247 (270)
Q Consensus 176 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~~~ 247 (270)
.+++|+++.|.+.. .+.++..-|-.+|.+....+++..|.++|.++-.+. -++.+....++..-.+.
T Consensus 647 al~lgrl~iA~~la-----~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~ 721 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLA-----VEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQ 721 (794)
T ss_pred hhhcCcHHHHHHHH-----HhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence 35678887776633 344567778888888888888888888888765432 24555555555544444
Q ss_pred CC
Q psy6284 248 NI 249 (270)
Q Consensus 248 ~~ 249 (270)
|.
T Consensus 722 g~ 723 (794)
T KOG0276|consen 722 GK 723 (794)
T ss_pred cc
Confidence 44
No 444
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=58.34 E-value=45 Score=23.75 Aligned_cols=35 Identities=17% Similarity=0.081 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
.....+..++..|..++..||.+.|-.+|.+.+.+
T Consensus 33 ~y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L 67 (115)
T PF08969_consen 33 RYLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTL 67 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 35677888999999999999999999999998876
No 445
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.86 E-value=29 Score=22.86 Aligned_cols=16 Identities=6% Similarity=-0.039 Sum_probs=7.4
Q ss_pred HcCCHHHHHHHHHHHH
Q psy6284 212 SLNHFEDARKDILKVL 227 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al 227 (270)
..|+|++|+.+|..++
T Consensus 18 ~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 18 QEGRYSEAVFYYKEAA 33 (76)
T ss_pred HccCHHHHHHHHHHHH
Confidence 4444444444444443
No 446
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=57.83 E-value=44 Score=21.97 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284 124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA 158 (270)
Q Consensus 124 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~a 158 (270)
...+-++.+..+.+.|..+++.|++..|+.++.=+
T Consensus 27 ~a~~~~~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa 61 (75)
T PF04010_consen 27 AAEEILEMAESYLEDGKYFLEKGDYVNALACFSYA 61 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33455677888999999999999999999887544
No 447
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=56.88 E-value=57 Score=22.94 Aligned_cols=43 Identities=23% Similarity=0.205 Sum_probs=20.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 172 RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 172 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
.|..-+..|++..|.....++-+..+...-.+..-|.+-..+|
T Consensus 65 ~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 65 RGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3444445555555555555555444333334444444444443
No 448
>KOG1258|consensus
Probab=55.94 E-value=1.8e+02 Score=27.28 Aligned_cols=106 Identities=16% Similarity=0.076 Sum_probs=71.6
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHH---HHHHHHhcC--C-CCHHHHHHHHHH-HHHcCC
Q psy6284 143 VKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA---DCTASLKLD--N-TYVKAYQRRAAA-RRSLNH 215 (270)
Q Consensus 143 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~---~~~~al~~~--p-~~~~a~~~~g~~-~~~~g~ 215 (270)
-..|++..|...|++..+..|....+=........++|..+.+.. .+.....-. + -..+.+...+.. +.-.++
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d 456 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIRED 456 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcC
Confidence 356788888888888888778877777777777777777777763 322222111 1 123334444444 344678
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 216 FEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 216 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
.+.|...+.+++...|.+...+..+..+.....
T Consensus 457 ~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 457 ADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 888999999999999999988888777765443
No 449
>KOG1464|consensus
Probab=55.89 E-value=42 Score=28.26 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
..+++.-...|+.++|++.+..|.+.|..
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTY 94 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTY 94 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34677788889999999999999998763
No 450
>PF13041 PPR_2: PPR repeat family
Probab=55.87 E-value=39 Score=19.63 Aligned_cols=20 Identities=10% Similarity=-0.062 Sum_probs=7.9
Q ss_pred HHHHHccCHHHHHHHHHHHH
Q psy6284 174 LCFLKMKNYVSAEADCTASL 193 (270)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~al 193 (270)
..+.+.|++++|.+.|++..
T Consensus 11 ~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 11 SGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHCcCHHHHHHHHHHHH
Confidence 33333444444444443333
No 451
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=55.54 E-value=28 Score=17.82 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=14.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q psy6284 204 QRRAAARRSLNHFEDARKDILKVL 227 (270)
Q Consensus 204 ~~~g~~~~~~g~~~~A~~~~~~al 227 (270)
..+=.+|.+.|++++|.+.|.+..
T Consensus 4 n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 4 NTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455666666666666666544
No 452
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.18 E-value=1.5e+02 Score=26.03 Aligned_cols=60 Identities=10% Similarity=0.138 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh---C---------------------------CCC---HHHHHHHHHHHHHccC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQT---Y---------------------------PHD---AVFFANRALCFLKMKN 181 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~---~---------------------------p~~---~~~~~~~a~~~~~~~~ 181 (270)
-.+.|..++..++|.+....+..+-.. + |.. ..+.+.+|+-|+..++
T Consensus 61 ~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD 140 (449)
T COG3014 61 DLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGGNIYEGVLINYYKALNYMLLND 140 (449)
T ss_pred hhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCchhHHHHHHHHHHHhhHHHhcc
Confidence 446688888888887766665544321 1 111 2367778888889999
Q ss_pred HHHHHHHHHHHHh
Q psy6284 182 YVSAEADCTASLK 194 (270)
Q Consensus 182 ~~~A~~~~~~al~ 194 (270)
++.|.--|+++..
T Consensus 141 ~~~ArVEfnRan~ 153 (449)
T COG3014 141 SAKARVEFNRANE 153 (449)
T ss_pred hhhhHHHHHHHHH
Confidence 8887766666653
No 453
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=54.87 E-value=32 Score=22.69 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhCCCCHH
Q psy6284 216 FEDARKDILKVLALEPNNKQ 235 (270)
Q Consensus 216 ~~~A~~~~~~al~~~p~~~~ 235 (270)
|.+|++.|..+++..|+...
T Consensus 29 Y~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 29 YQEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHHHHhhCCCHHH
Confidence 34455566666667775443
No 454
>KOG0985|consensus
Probab=53.75 E-value=2.3e+02 Score=28.92 Aligned_cols=55 Identities=15% Similarity=0.067 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA 191 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 191 (270)
...|-+.|....+.|...+|++.|-+| +++..|...-..-.+.|.|++-+..+.-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 445777888888889999999888554 4555555555555556666655554433
No 455
>KOG4563|consensus
Probab=53.42 E-value=27 Score=30.45 Aligned_cols=55 Identities=11% Similarity=-0.048 Sum_probs=43.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASLKLDN--------TYVKAYQRRAAARRSLNHFEDARKDI 223 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~a~~~~g~~~~~~g~~~~A~~~~ 223 (270)
....|.-++.+++++.|...|..|..+.. .+..++|.+|.+++.+++++..+-.+
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45567777789999999999998887643 45779999999999999888776443
No 456
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=53.29 E-value=65 Score=30.23 Aligned_cols=76 Identities=18% Similarity=0.095 Sum_probs=55.1
Q ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284 174 LCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPL 251 (270)
Q Consensus 174 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 251 (270)
+.+-+.+..+.+....+.-+.-........+..|..+-..++.+.|-++|++.+..+|+ +++...+.-+.+.|-.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 91 (578)
T PRK15490 16 LTLKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAK 91 (578)
T ss_pred HHHHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhh
Confidence 34445556676766666666556667778888999999999999999999999999999 44555554444444433
No 457
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.17 E-value=71 Score=26.16 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHH-ccCHHHHHHHHHHHH
Q psy6284 149 GEAIEKYNVAIQT-----YPHDAV---FFANRALCFLK-MKNYVSAEADCTASL 193 (270)
Q Consensus 149 ~~A~~~y~~al~~-----~p~~~~---~~~~~a~~~~~-~~~~~~A~~~~~~al 193 (270)
+.|...|++|+++ .|.+|. +.+|.+..|+. +++.++|+...++++
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5666667666653 444542 44445544433 677777777666665
No 458
>PRK11619 lytic murein transglycosylase; Provisional
Probab=52.61 E-value=2.1e+02 Score=27.50 Aligned_cols=54 Identities=6% Similarity=-0.161 Sum_probs=41.6
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 175 CFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
.-+..++++.+...+...-..........|-+|.++..+|+.++|...|+++..
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 334678888777777664433345678899999998889999999999999854
No 459
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=52.60 E-value=54 Score=29.73 Aligned_cols=72 Identities=7% Similarity=-0.034 Sum_probs=0.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 154 KYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 154 ~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
.|++++..-|..+..|+.-..-+...++-+.|+....+++...|. .++.++.+|-...+-++-..+|.+|++
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH
No 460
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.58 E-value=55 Score=27.62 Aligned_cols=100 Identities=8% Similarity=0.035 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHcCCHHHH
Q psy6284 148 WGEAIEKYNVAIQTYPHDAVFFANRALCFLKM--KNYVSAEADCTASLKLDNTYVKAYQRRAAAR------RSLNHFEDA 219 (270)
Q Consensus 148 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~------~~~g~~~~A 219 (270)
++.-+.....+++-+|.+.-.|..+-.|+-.- ..+..=+....+.+..||.|.-+|..+-.+. ....++...
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 44556668888888999999999998887655 5677778888999999998888777665555 444455556
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 220 RKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 220 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
.++=..++.-|+.|..||...-......
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~ 197 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERR 197 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHH
Confidence 7777788899999999999985544433
No 461
>KOG2041|consensus
Probab=51.91 E-value=76 Score=30.52 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=8.2
Q ss_pred cCCHHHHHHHHH
Q psy6284 145 EGKWGEAIEKYN 156 (270)
Q Consensus 145 ~g~~~~A~~~y~ 156 (270)
-|+|++|.+.|-
T Consensus 747 ~g~feeaek~yl 758 (1189)
T KOG2041|consen 747 YGEFEEAEKLYL 758 (1189)
T ss_pred hcchhHhhhhhh
Confidence 367777777773
No 462
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=51.00 E-value=73 Score=22.04 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 124 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
..+.....|......+....+.|+|++|...+.++-+
T Consensus 6 ~iI~~aG~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~ 42 (96)
T PF02255_consen 6 QIISHAGDARSLAMEALKAAREGDFEEAEELLKEADE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445556778888889999999999999999888765
No 463
>KOG2581|consensus
Probab=50.61 E-value=1.9e+02 Score=25.99 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH------HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFF------ANRALCFLKMKNYVSAEADCTASLKLDNTYVKAY 203 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~------~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 203 (270)
+.|..++-.|....-+++|..|.+++.+|+...|++..+- .-+..+-+.+|++.+-...++..++ ..-..|
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~~---ksL~~Y 321 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGMR---KSLRPY 321 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccHH---HHHHHH
Confidence 4466777788888899999999999999999999854321 1122233345665543222221111 123456
Q ss_pred HHHHHHH--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 204 QRRAAAR--RSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243 (270)
Q Consensus 204 ~~~g~~~--~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 243 (270)
|.+..+- ..+..|.+-++-|..-+..|-...-+-.....+
T Consensus 322 f~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty~LivRLR~NV 363 (493)
T KOG2581|consen 322 FKLTQAVRLGDLKKFNETLEQFKDKFQADGTYTLIVRLRHNV 363 (493)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 6666554 345567777888877777776655444433333
No 464
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=50.22 E-value=38 Score=22.52 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHhcCC
Q psy6284 181 NYVSAEADCTASLKLDN 197 (270)
Q Consensus 181 ~~~~A~~~~~~al~~~p 197 (270)
.|+.|.+..++++..+.
T Consensus 4 ~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 4 YYKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 35666666666665553
No 465
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=50.04 E-value=70 Score=22.22 Aligned_cols=37 Identities=24% Similarity=0.154 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 124 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
..+.....|+...-.+....+.|+|++|.....++-+
T Consensus 7 ~iI~~aG~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~ 43 (97)
T cd00215 7 QIILHAGNARSKALEALKAAKEGDFAEAEELLEEAND 43 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556777888889999999999999998888754
No 466
>KOG2997|consensus
Probab=49.93 E-value=42 Score=28.80 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFA 170 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~ 170 (270)
.+.|..++..|...-+.|..-+|+..|..|+.+.|+-...+.
T Consensus 16 ~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 16 AKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 456778999999999999999999999999999887655444
No 467
>KOG3616|consensus
Probab=49.81 E-value=1.2e+02 Score=29.61 Aligned_cols=93 Identities=16% Similarity=0.154 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH------HHhh----CCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhc-------
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNV------AIQT----YPHDA-VFFANRALCFLKMKNYVSAEADCTASLKL------- 195 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~------al~~----~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 195 (270)
.+-..|..+-+..++++|+++|++ ++++ .|... .+--.-|.-+...|+++.|+..|-++-.+
T Consensus 663 lydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaa 742 (1636)
T KOG3616|consen 663 LYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAA 742 (1636)
T ss_pred HHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHH
Confidence 344567777788889999988765 3443 23322 11222334444555565555444322100
Q ss_pred -----------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284 196 -----------------DNT-YVKAYQRRAAARRSLNHFEDARKDILKV 226 (270)
Q Consensus 196 -----------------~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~a 226 (270)
+.. -...|-..+.-|...|+|+-|.+.|.++
T Consensus 743 i~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 111 1122334566677777877777766543
No 468
>KOG2114|consensus
Probab=49.69 E-value=91 Score=30.51 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
+.....-|..+|++|+|++|...|-++|..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 556777899999999999999999998874
No 469
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=49.58 E-value=41 Score=18.10 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHhhCC
Q psy6284 216 FEDARKDILKVLALEP 231 (270)
Q Consensus 216 ~~~A~~~~~~al~~~p 231 (270)
++.|...|++.+...|
T Consensus 3 ~dRAR~IyeR~v~~hp 18 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP 18 (32)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3444444444444443
No 470
>KOG4014|consensus
Probab=48.90 E-value=1.3e+02 Score=23.81 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----c--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----
Q psy6284 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM-----K--NYVSAEADCTASLKLDNTYVKAYQRRAAARRSL---- 213 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~---- 213 (270)
.++...|++.|..+-+ -+.+.+..++|+++..- . +...|.+.++++..++- ..+.|.+...+..-
T Consensus 86 ~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~--~~aCf~LS~m~~~g~~k~ 161 (248)
T KOG4014|consen 86 DASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED--GEACFLLSTMYMGGKEKF 161 (248)
T ss_pred ccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC--chHHHHHHHHHhccchhh
Confidence 4678899999988876 56778888888877542 2 26778888888887763 44555554444433
Q ss_pred --------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 214 --------------------NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 214 --------------------g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
.+.+.|.+.--+|.++ +++.+-.++...+ ++|+
T Consensus 162 ~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMy-klGD 214 (248)
T KOG4014|consen 162 KTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL--DIPQACANVSRMY-KLGD 214 (248)
T ss_pred cccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHH-HccC
Confidence 4567777777777665 4666666777665 3443
No 471
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=47.42 E-value=73 Score=22.22 Aligned_cols=38 Identities=18% Similarity=0.020 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 123 EEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 123 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
+..+.....|+.....+....+.|+|++|...+.++-+
T Consensus 8 ~~iI~~aG~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~ 45 (99)
T TIGR00823 8 FELIAYAGDARSKALEALKAAKAGDFAKARALVEQAGM 45 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445566778888889999999999999988887754
No 472
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=47.04 E-value=61 Score=22.82 Aligned_cols=38 Identities=18% Similarity=0.115 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 123 EEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 123 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
+..+.....++...-.+....+.|+|++|...+.+|-+
T Consensus 11 ~~II~~aG~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 11 FEIILHSGNARTEVHEAFAAMREGNFDLAEQKLNQSNE 48 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445556788888889999999999999999888755
No 473
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=46.76 E-value=1.1e+02 Score=22.37 Aligned_cols=64 Identities=19% Similarity=0.066 Sum_probs=48.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHH----Hhh
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASLKLDNT---------------YVKAYQRRAAARRSLNHFEDARKDILKV----LAL 229 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~a~~~~g~~~~~~g~~~~A~~~~~~a----l~~ 229 (270)
+.++|...++.+++-.++-.|++|+.+..+ ......++|..+..+|+.+-.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 566788888888988888888888855321 1235678999999999999999998744 555
Q ss_pred CCC
Q psy6284 230 EPN 232 (270)
Q Consensus 230 ~p~ 232 (270)
-|.
T Consensus 84 iPQ 86 (140)
T PF10952_consen 84 IPQ 86 (140)
T ss_pred ccC
Confidence 554
No 474
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=46.35 E-value=44 Score=29.56 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC
Q psy6284 149 GEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN 181 (270)
Q Consensus 149 ~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~ 181 (270)
..|+.++++|.. .++|..|.++|.++..+|+
T Consensus 335 ~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 335 KKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 344444444433 3445555555555555544
No 475
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=46.07 E-value=1.7e+02 Score=24.26 Aligned_cols=118 Identities=19% Similarity=0.185 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------hhCCCCHHHHHHHH-HHHHHccCHHHHHHHHHHHHh
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAI----------------QTYPHDAVFFANRA-LCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al----------------~~~p~~~~~~~~~a-~~~~~~~~~~~A~~~~~~al~ 194 (270)
.+.....|..+++.|+|.+|..+|-.+- .-.|.+...+..+| +.|+.+++...|...+..-++
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455566888888888888887763221 22567778888888 456677998888877666554
Q ss_pred c----CC-----------CCHHHHHH-HHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 195 L----DN-----------TYVKAYQR-RAAARRSLNH---FEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 195 ~----~p-----------~~~~a~~~-~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
. .| ..+-..|. +-..-+..++ |..=.+.|+..|+.+|........++.++.-+..
T Consensus 170 ~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 170 KLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp HHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHHHHHH---S
T ss_pred HHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHHHHHCCCCC
Confidence 4 32 22222111 1111223333 3344556666777888889999999999876554
No 476
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=45.26 E-value=1.1e+02 Score=26.03 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=27.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCCCCcch--HhhhcCCC
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPNN--KQAEIELAELNRKLNIPLSPIK--VDFLHNPY 263 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~~~~~~a~~--~~~~~~~~ 263 (270)
++.+++++.+.+...-+-... |++ +.+...-..++.+.+++..... +.|+++|.
T Consensus 92 ALAEmnrWreVLsWvlqyYq~-pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~ 149 (309)
T PF07163_consen 92 ALAEMNRWREVLSWVLQYYQV-PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS 149 (309)
T ss_pred HHHHHhhHHHHHHHHHHHhcC-cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc
Confidence 455566666665555444433 332 3444444444555555544444 55555554
No 477
>KOG0889|consensus
Probab=45.12 E-value=3.2e+02 Score=31.75 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----CC---HHHHHHHHHHHHhhCCCCHHHH
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL-----NH---FEDARKDILKVLALEPNNKQAE 237 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~-----g~---~~~A~~~~~~al~~~p~~~~a~ 237 (270)
.+.+..+|..+.++|++++|-..|..|++++-...++|...|.-.... ++ -..|+.+|-+|.... .+..++
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~-~~skaR 2890 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLY-NSSKAR 2890 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccc-cchhhH
Confidence 567888999999999999999999999999999999999999876531 11 234666666666543 456777
Q ss_pred HHHHHHHHHh
Q psy6284 238 IELAELNRKL 247 (270)
Q Consensus 238 ~~l~~~~~~~ 247 (270)
..++.++..+
T Consensus 2891 k~iakvLwLl 2900 (3550)
T KOG0889|consen 2891 KLIAKVLWLL 2900 (3550)
T ss_pred HHHHHHHHHH
Confidence 7788887665
No 478
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=44.87 E-value=2.3e+02 Score=25.36 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCH--------------HHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNY--------------VSAEADCTASL 193 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~--------------~~A~~~~~~al 193 (270)
.....|..+|-.|||+.|...|..+.+-.-.+ ..+.-..|+|.+..+.. +.|...|.++-
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 35567999999999999999999988744333 23455566666665532 33444444421
Q ss_pred ----hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 194 ----KLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 194 ----~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
........+.+..+.++...|.+.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 111233456666777788899988877777666655
No 479
>KOG4151|consensus
Probab=44.30 E-value=30 Score=33.14 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=60.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
-+.....++|..++....-++...|....+++-++.||..++.++-|+.+..-....+|.+..+.-.....+.
T Consensus 100 ~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ 172 (748)
T KOG4151|consen 100 CYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKG 172 (748)
T ss_pred HHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 3444567899999999999999999999999999999999999999999988888899998665554444433
No 480
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=44.03 E-value=1.2e+02 Score=21.96 Aligned_cols=46 Identities=11% Similarity=0.027 Sum_probs=31.9
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Q psy6284 144 KEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190 (270)
Q Consensus 144 ~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 190 (270)
+.+.....+.++...+..++.++..+..+..+|.+.+ ....+..+.
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 4567888888888888887777777777777776543 344444444
No 481
>KOG4056|consensus
Probab=43.80 E-value=71 Score=23.73 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF 168 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~ 168 (270)
.-.+.|..++.+|+++++..++-.||.+.|.-..+
T Consensus 83 qqv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 83 QQVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred HHHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 34577999999999999999999999998876554
No 482
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=43.06 E-value=2.1e+02 Score=25.08 Aligned_cols=73 Identities=11% Similarity=0.064 Sum_probs=50.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQT--YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
+++......--...++......... .......+..+|..+.++|+.++|-..|++++.+.++-....+-+...
T Consensus 334 NRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~r~ 408 (415)
T COG4941 334 NRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQRL 408 (415)
T ss_pred hHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3444444444455555555444332 223456788899999999999999999999999998887766655543
No 483
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=42.87 E-value=48 Score=16.94 Aligned_cols=23 Identities=9% Similarity=-0.120 Sum_probs=12.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q psy6284 204 QRRAAARRSLNHFEDARKDILKV 226 (270)
Q Consensus 204 ~~~g~~~~~~g~~~~A~~~~~~a 226 (270)
..+-.++.+.|+++.|...|+.-
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444555555555555555543
No 484
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=42.70 E-value=69 Score=20.74 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhCCC
Q psy6284 217 EDARKDILKVLALEPN 232 (270)
Q Consensus 217 ~~A~~~~~~al~~~p~ 232 (270)
..|++.|.++++.+|+
T Consensus 32 ~~a~e~l~~~~~~~~~ 47 (77)
T smart00745 32 KKAIEYLLEGIKVESD 47 (77)
T ss_pred HHHHHHHHHHhccCCC
Confidence 3444555555666654
No 485
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=42.64 E-value=2.9e+02 Score=25.92 Aligned_cols=84 Identities=10% Similarity=0.097 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHH
Q psy6284 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-----DNTYVKAYQRRAAARRSLNHFEDAR 220 (270)
Q Consensus 146 g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~~g~~~~~~g~~~~A~ 220 (270)
..|..|+-.+-..-++.|... -..+++.|.+++.. +-.+.-.|..+|-.+++.+++.+|+
T Consensus 274 ~~YPmALg~LadLeEi~pt~~---------------r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~ 338 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPG---------------RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREAL 338 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TT---------------S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHH
T ss_pred hhCchhhhhhHhHHhhccCCC---------------CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHH
Confidence 367888888877777777532 12233334444322 2345667788888899999999999
Q ss_pred HHHHHHHhh------CCCCHHHHHHHHHHH
Q psy6284 221 KDILKVLAL------EPNNKQAEIELAELN 244 (270)
Q Consensus 221 ~~~~~al~~------~p~~~~a~~~l~~~~ 244 (270)
..+..+-.. ..+|.++|..+-.+-
T Consensus 339 ~~Wa~aa~Vi~~YnY~reDeEiYKEfleIA 368 (618)
T PF05053_consen 339 RSWAEAADVIRKYNYSREDEEIYKEFLEIA 368 (618)
T ss_dssp HHHHHHHHHHTTSB--GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence 988877543 245777777766653
No 486
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=42.58 E-value=1.9e+02 Score=24.49 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHc----------------------cCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 151 AIEKYNVAIQTYPHDAVFFANRALCFLKM----------------------KNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 151 A~~~y~~al~~~p~~~~~~~~~a~~~~~~----------------------~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
-....+.=++..|+...++..+|.++... .-.+.|..++.+++.++|....++..+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 34445556778899988888888877663 22466889999999999999999998888
Q ss_pred HHHHcCCHHHHHHHHHH------HHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 209 ARRSLNHFEDARKDILK------VLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~------al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
+-...|+.+-=.+.|.- ....+-.++.++......+...|-
T Consensus 142 ~s~~fgeP~WL~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~ 188 (277)
T PF13226_consen 142 ISAYFGEPDWLAALFAGQPAESRPLAHAEYDPEVWQAAAALLARYGL 188 (277)
T ss_pred HHhhcCCchHHHHHHCCCCCCcchHHHhhcchhhHHHHHHHHHHcCC
Confidence 88888876543333320 111112356666666666666665
No 487
>KOG2114|consensus
Probab=41.98 E-value=1.2e+02 Score=29.80 Aligned_cols=106 Identities=12% Similarity=0.012 Sum_probs=66.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCC
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHD-AVFFANRALCFLKMKNYVSAEADCTASLK-LDNTYVKAYQRRAAARRSLNH 215 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~~g~~~~~~g~ 215 (270)
+-+.+++..-|..|+..-+. ...+++. ..++.-.|.-++..|++++|...|-+++. ++|...--.|.-++ +
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq------~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQ------R 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHH------H
Confidence 35667888888888866433 2334433 35677778888999999999999999985 56644333332122 2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 216 FEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 216 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
..+=..+++...+-.-.+..--..|-.|+.++++.
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcch
Confidence 22333344444555555666666677777777653
No 488
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=41.82 E-value=88 Score=23.64 Aligned_cols=33 Identities=21% Similarity=0.441 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHH
Q psy6284 135 SKEQGNKLVKEG-KWGEAIEKYNVAIQTYPHDAV 167 (270)
Q Consensus 135 ~~~~g~~~~~~g-~~~~A~~~y~~al~~~p~~~~ 167 (270)
-...|..+...| ++.+|..+|-+||..+|+-..
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 456799999999 999999999999999887544
No 489
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=41.52 E-value=74 Score=27.83 Aligned_cols=47 Identities=13% Similarity=-0.008 Sum_probs=41.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6284 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA 191 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 191 (270)
....-+|+..++.++...|.+......+..+|..+|-...|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34566888999999999999999999999999999999999998854
No 490
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=40.65 E-value=17 Score=24.91 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=11.4
Q ss_pred ccceEEEEecCCCC
Q psy6284 13 FARIWHIYDAKWQN 26 (270)
Q Consensus 13 ~~~~~~~~d~~~~~ 26 (270)
-+|.|.|.|++|++
T Consensus 31 ~sR~W~I~d~~g~~ 44 (90)
T PF04379_consen 31 LSRHWIITDADGHV 44 (90)
T ss_dssp EEEEEEEEETTS-E
T ss_pred EccEEEEEeCCCCE
Confidence 38999999999864
No 491
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.14 E-value=92 Score=24.59 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=21.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALC 175 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~ 175 (270)
-.++.+.|.|++|.+.+++..+ +|+......-++.+
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 4456677777777777777665 66655544434333
No 492
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=39.61 E-value=83 Score=20.42 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhCCCC
Q psy6284 218 DARKDILKVLALEPNN 233 (270)
Q Consensus 218 ~A~~~~~~al~~~p~~ 233 (270)
.|++.|..+++.+|+.
T Consensus 31 ~aie~l~~~~k~e~~~ 46 (75)
T cd02678 31 HALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHHhhCCCH
Confidence 3444555555566643
No 493
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=38.60 E-value=1.1e+02 Score=21.96 Aligned_cols=38 Identities=13% Similarity=-0.025 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 123 EEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 123 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
+..+.....|+.+.-.+....+.|+|++|.....+|-+
T Consensus 22 ~~II~~aG~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e 59 (115)
T PRK10454 22 MGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 59 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445556788888889999999999999999888765
No 494
>KOG4056|consensus
Probab=38.02 E-value=95 Score=23.10 Aligned_cols=35 Identities=9% Similarity=0.001 Sum_probs=20.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
+|..+...|+++++..+|-.||.+-|.-.+....+
T Consensus 87 lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqLL~vl 121 (143)
T KOG4056|consen 87 LGEELLAQGNEEEGAEHLANAIVVCGQPAQLLQVL 121 (143)
T ss_pred hHHHHHHccCHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 55666666666666666666666665555444433
No 495
>KOG1463|consensus
Probab=37.65 E-value=2.8e+02 Score=24.34 Aligned_cols=92 Identities=10% Similarity=0.029 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh----C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHH--
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQT----Y--PHDAVFFANRALCFLKMKNYVSAEADCTASLKL-----DNTYVKAY-- 203 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~----~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~a~-- 203 (270)
.....|+..++|.+|+......+.. + +.-.+++..-.-+|..+.+...|...+..|-.. .|....+-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 4577889999999999988776653 1 223456666777777888888877776655432 22222222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 204 QRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 204 ~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
..-|..++.-.+|..|..+|-.|++
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfE 237 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFE 237 (411)
T ss_pred HhccceeecccccchHHHHHHHHHc
Confidence 2236666666788888888888776
No 496
>KOG3807|consensus
Probab=37.50 E-value=2.8e+02 Score=24.26 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 218 DARKDILKVLALEPNNKQAEIELAEL 243 (270)
Q Consensus 218 ~A~~~~~~al~~~p~~~~a~~~l~~~ 243 (270)
.|++.+.++.+.||.-+.....+..+
T Consensus 380 ~AvEAihRAvEFNPHVPkYLLE~ksl 405 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYLLEMKSL 405 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHHHHHHhc
Confidence 47788888888888877666555443
No 497
>KOG4459|consensus
Probab=37.28 E-value=52 Score=29.63 Aligned_cols=87 Identities=11% Similarity=0.004 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
+.-.-..+|+.|++.+|+..-...+-.+|++-.+..|+-.-.-.++.-+.- +..+.+....++|.+|.-++..+
T Consensus 136 y~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~d~------l~DlE~~~~~~~Fir~v~~y~~~ 209 (471)
T KOG4459|consen 136 YQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSEDE------LTDLERREHEQWFIRGVRLYSGE 209 (471)
T ss_pred HHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCccc------ccccccchHHHHHHHHhhhcccc
Confidence 333456678888888888887777777888877777765443334433322 22345556678888888888888
Q ss_pred CHHHHHHHHHHHH
Q psy6284 215 HFEDARKDILKVL 227 (270)
Q Consensus 215 ~~~~A~~~~~~al 227 (270)
++..+...+..+|
T Consensus 210 d~~~~v~~ve~AL 222 (471)
T KOG4459|consen 210 DPRQCVPEVELAL 222 (471)
T ss_pred CchhcchhHHHHH
Confidence 8777776666555
No 498
>KOG1811|consensus
Probab=37.16 E-value=1.7e+02 Score=27.80 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHH
Q psy6284 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN-KQAEIELA 241 (270)
Q Consensus 198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-~~a~~~l~ 241 (270)
+-..+|...|.+..+.+++..|..-|.+++++--++ +.+...+.
T Consensus 585 D~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~dii 629 (1141)
T KOG1811|consen 585 DTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDII 629 (1141)
T ss_pred CcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHH
Confidence 345689999999999999999999999999986444 44444443
No 499
>KOG0890|consensus
Probab=36.96 E-value=5.1e+02 Score=29.01 Aligned_cols=66 Identities=9% Similarity=-0.096 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
-...|...|.+-...|.++.|....-+|.+.. -+.++..+|..+...|+-..|+..++..+..+-.
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 36799999999999999999999998888877 5789999999999999999999999999976533
No 500
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=36.83 E-value=2e+02 Score=22.36 Aligned_cols=97 Identities=20% Similarity=0.133 Sum_probs=69.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHH
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLKL--------DNTYVKAYQR 205 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~ 205 (270)
.++-..-.+.|.|.+|-....+.++... +...+|..++.|.+-..+-.--+++=++..+. .|-++.|-..
T Consensus 97 leqva~kis~~~~~eaK~LlnkIi~nk~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI~ 176 (220)
T PF10858_consen 97 LEQVAIKISEKKYSEAKQLLNKIIENKEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATII 176 (220)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHHH
Confidence 3444455778999999999999998643 34678999999998887654444444444322 2444556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
.|......|...+|.+.++.++.-+-.
T Consensus 177 kaiwdik~nm~~~aeknL~~l~~Snn~ 203 (220)
T PF10858_consen 177 KAIWDIKNNMKNQAEKNLKNLLASNNV 203 (220)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhcch
Confidence 777778899999999999988876543
Done!