Query psy6284
Match_columns 270
No_of_seqs 318 out of 2236
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 22:31:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ftc_H L13MT, MRP-L13, 39S rib 100.0 9E-34 3.1E-38 208.4 7.7 107 1-107 1-108 (148)
2 3v2d_N 50S ribosomal protein L 100.0 2.6E-31 8.9E-36 193.2 5.5 96 12-107 8-103 (140)
3 3r8s_J 50S ribosomal protein L 100.0 5.9E-31 2E-35 191.8 6.6 99 9-107 7-105 (142)
4 3f1f_N 50S ribosomal protein L 100.0 7.4E-31 2.5E-35 194.1 4.3 96 12-107 31-126 (163)
5 2zjr_G 50S ribosomal protein L 100.0 2.4E-30 8.2E-35 193.7 6.4 95 13-107 37-131 (174)
6 3bbo_L Ribosomal protein L13; 100.0 2E-29 7E-34 196.7 5.1 100 8-107 105-204 (250)
7 4gco_A Protein STI-1; structur 99.9 8.5E-24 2.9E-28 156.0 17.4 115 130-244 11-125 (126)
8 2hr2_A Hypothetical protein; a 99.9 4.7E-22 1.6E-26 150.6 10.9 121 127-247 6-149 (159)
9 3rkv_A Putative peptidylprolyl 99.9 2.2E-21 7.5E-26 148.7 13.0 129 127-255 6-153 (162)
10 3upv_A Heat shock protein STI1 99.9 4.5E-20 1.5E-24 135.2 16.8 117 131-247 3-125 (126)
11 4ga2_A E3 SUMO-protein ligase 99.8 4.6E-20 1.6E-24 139.9 15.0 119 131-249 30-149 (150)
12 4gcn_A Protein STI-1; structur 99.8 1.1E-19 3.9E-24 133.9 16.2 114 129-243 5-125 (127)
13 3gyz_A Chaperone protein IPGC; 99.8 3.9E-19 1.3E-23 135.0 16.9 104 131-234 35-138 (151)
14 2fbn_A 70 kDa peptidylprolyl i 99.8 3.5E-19 1.2E-23 140.8 16.9 141 114-254 20-176 (198)
15 1p5q_A FKBP52, FK506-binding p 99.8 5.6E-20 1.9E-24 157.7 12.5 132 124-255 139-285 (336)
16 4gyw_A UDP-N-acetylglucosamine 99.8 3.6E-19 1.2E-23 166.6 17.6 124 132-255 43-166 (723)
17 4ga2_A E3 SUMO-protein ligase 99.8 3.8E-20 1.3E-24 140.4 8.5 127 138-264 3-133 (150)
18 1kt0_A FKBP51, 51 kDa FK506-bi 99.8 4.6E-20 1.6E-24 164.6 9.9 134 122-255 258-406 (457)
19 3sz7_A HSC70 cochaperone (SGT) 99.8 1.2E-18 4E-23 133.6 15.9 118 131-248 10-129 (164)
20 2vgx_A Chaperone SYCD; alterna 99.8 2.4E-18 8.1E-23 130.2 15.9 117 131-247 20-136 (148)
21 2xcb_A PCRH, regulatory protei 99.8 2.2E-18 7.4E-23 129.2 14.8 116 132-247 18-133 (142)
22 2h6f_A Protein farnesyltransfe 99.8 2.3E-18 7.7E-23 150.1 16.9 122 134-255 99-221 (382)
23 3urz_A Uncharacterized protein 99.8 2.4E-18 8.1E-23 137.4 15.2 118 132-249 4-137 (208)
24 2pl2_A Hypothetical conserved 99.8 1.8E-18 6.2E-23 139.0 14.5 131 132-263 39-183 (217)
25 3vtx_A MAMA; tetratricopeptide 99.8 5.1E-18 1.7E-22 132.1 16.3 129 134-262 7-172 (184)
26 2vyi_A SGTA protein; chaperone 99.8 2.9E-17 1E-21 119.4 18.3 121 130-250 10-130 (131)
27 4gyw_A UDP-N-acetylglucosamine 99.8 6.5E-18 2.2E-22 158.1 18.5 135 130-264 7-144 (723)
28 2pl2_A Hypothetical conserved 99.8 7.2E-18 2.5E-22 135.5 16.0 123 132-255 73-206 (217)
29 2lni_A Stress-induced-phosphop 99.8 9.5E-18 3.3E-22 122.8 15.2 118 132-249 16-133 (133)
30 4i17_A Hypothetical protein; T 99.8 9.9E-18 3.4E-22 135.0 16.5 131 133-263 8-149 (228)
31 2if4_A ATFKBP42; FKBP-like, al 99.8 1.5E-19 5.1E-24 155.2 4.9 132 119-250 166-314 (338)
32 1elw_A TPR1-domain of HOP; HOP 99.8 4E-17 1.4E-21 116.6 16.8 115 131-245 3-117 (118)
33 1vq8_J 50S ribosomal protein L 99.8 5.3E-20 1.8E-24 135.0 1.0 81 11-107 3-83 (145)
34 1ihg_A Cyclophilin 40; ppiase 99.8 7.1E-18 2.4E-22 146.5 14.3 131 125-255 216-362 (370)
35 3q49_B STIP1 homology and U bo 99.8 2.5E-17 8.7E-22 121.7 15.3 117 132-248 9-130 (137)
36 1j3a_A 50S ribosomal protein L 99.8 1.2E-19 4E-24 133.2 2.4 78 17-107 1-79 (142)
37 1a17_A Serine/threonine protei 99.8 3.1E-17 1.1E-21 124.8 16.0 129 127-255 8-138 (166)
38 1hxi_A PEX5, peroxisome target 99.8 1E-17 3.5E-22 122.3 12.7 101 135-235 20-120 (121)
39 2h6f_A Protein farnesyltransfe 99.8 1.4E-17 4.6E-22 145.2 14.8 134 131-264 130-273 (382)
40 3vtx_A MAMA; tetratricopeptide 99.7 8E-17 2.7E-21 125.3 16.7 103 132-234 73-175 (184)
41 2dba_A Smooth muscle cell asso 99.7 1E-16 3.4E-21 119.6 15.2 115 132-246 28-145 (148)
42 3gyz_A Chaperone protein IPGC; 99.7 1.5E-18 5.2E-23 131.7 5.1 110 153-262 23-135 (151)
43 1na0_A Designed protein CTPR3; 99.7 6.2E-16 2.1E-20 111.4 18.3 117 132-248 9-125 (125)
44 2xev_A YBGF; tetratricopeptide 99.7 4.6E-16 1.6E-20 113.6 16.9 115 134-248 4-124 (129)
45 4gco_A Protein STI-1; structur 99.7 2.6E-17 8.8E-22 121.0 10.0 108 157-264 4-114 (126)
46 1elr_A TPR2A-domain of HOP; HO 99.7 2.8E-16 9.6E-21 114.3 15.0 119 131-250 3-128 (131)
47 1zu2_A Mitochondrial import re 99.7 4.6E-17 1.6E-21 122.9 10.1 100 145-244 15-135 (158)
48 4b6a_O 60S ribosomal protein L 99.7 2.5E-18 8.7E-23 132.1 2.6 82 14-107 3-84 (199)
49 4i17_A Hypothetical protein; T 99.7 1.5E-16 5.3E-21 128.0 12.9 117 134-250 44-169 (228)
50 1hh8_A P67PHOX, NCF-2, neutrop 99.7 5.4E-16 1.8E-20 123.2 15.0 121 132-255 6-142 (213)
51 2fo7_A Synthetic consensus TPR 99.7 1.2E-15 4.2E-20 111.0 15.4 122 134-255 3-124 (136)
52 1wao_1 Serine/threonine protei 99.7 6.7E-17 2.3E-21 144.9 8.7 125 131-255 5-131 (477)
53 3k9i_A BH0479 protein; putativ 99.7 1.5E-16 5.2E-21 115.0 8.9 107 144-250 2-111 (117)
54 3qky_A Outer membrane assembly 99.7 5.8E-16 2E-20 127.3 13.5 132 132-263 15-180 (261)
55 2vgx_A Chaperone SYCD; alterna 99.7 7.3E-17 2.5E-21 121.9 6.7 104 152-255 7-110 (148)
56 3as5_A MAMA; tetratricopeptide 99.7 4.8E-15 1.6E-19 114.0 16.4 123 133-255 43-165 (186)
57 2c2l_A CHIP, carboxy terminus 99.7 1.6E-15 5.5E-20 126.6 14.6 102 132-233 4-105 (281)
58 2vsy_A XCC0866; transferase, g 99.7 2.4E-15 8.3E-20 137.4 16.8 133 132-264 23-161 (568)
59 2pzi_A Probable serine/threoni 99.7 2.9E-16 9.9E-21 146.6 10.6 123 132-255 433-555 (681)
60 2q7f_A YRRB protein; TPR, prot 99.6 8.6E-15 2.9E-19 118.0 17.5 131 132-262 91-224 (243)
61 3urz_A Uncharacterized protein 99.6 6.8E-15 2.3E-19 117.2 16.2 79 136-214 58-136 (208)
62 3as5_A MAMA; tetratricopeptide 99.6 4E-15 1.4E-19 114.4 14.3 124 132-255 8-131 (186)
63 2q7f_A YRRB protein; TPR, prot 99.6 1.3E-14 4.4E-19 116.9 17.7 123 133-255 58-180 (243)
64 4a17_I RPL13A, 60S ribosomal p 99.6 3.3E-17 1.1E-21 126.1 1.9 82 14-107 2-83 (198)
65 3uq3_A Heat shock protein STI1 99.6 4.3E-15 1.5E-19 120.6 14.5 124 132-255 79-228 (258)
66 1w3b_A UDP-N-acetylglucosamine 99.6 7.4E-15 2.5E-19 127.2 16.8 132 132-263 237-371 (388)
67 1fch_A Peroxisomal targeting s 99.6 6.7E-15 2.3E-19 126.1 16.1 124 132-255 217-351 (368)
68 4abn_A Tetratricopeptide repea 99.6 1.5E-15 5.3E-20 135.9 12.5 123 132-255 137-279 (474)
69 2e2e_A Formate-dependent nitri 99.6 6.2E-16 2.1E-20 119.6 8.6 114 131-244 43-159 (177)
70 3u4t_A TPR repeat-containing p 99.6 1.8E-15 6.1E-20 124.3 11.8 121 134-255 5-129 (272)
71 4abn_A Tetratricopeptide repea 99.6 1.1E-15 3.8E-20 136.9 11.3 130 132-262 102-252 (474)
72 2kck_A TPR repeat; tetratricop 99.6 4.4E-15 1.5E-19 104.9 12.0 100 135-234 9-111 (112)
73 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.4E-14 4.7E-19 118.9 16.5 124 131-255 42-165 (275)
74 2vq2_A PILW, putative fimbrial 99.6 1.7E-14 5.9E-19 114.5 16.5 124 132-255 42-168 (225)
75 2yhc_A BAMD, UPF0169 lipoprote 99.6 9.3E-15 3.2E-19 117.7 15.0 132 133-264 42-216 (225)
76 3ieg_A DNAJ homolog subfamily 99.6 8.8E-15 3E-19 124.2 15.5 124 132-255 3-141 (359)
77 1w3b_A UDP-N-acetylglucosamine 99.6 9.2E-15 3.2E-19 126.6 15.7 120 135-254 172-291 (388)
78 2e2e_A Formate-dependent nitri 99.6 1.4E-14 4.6E-19 112.0 15.1 127 139-265 17-149 (177)
79 2yhc_A BAMD, UPF0169 lipoprote 99.6 5.5E-15 1.9E-19 119.1 12.9 124 132-255 4-168 (225)
80 3qou_A Protein YBBN; thioredox 99.6 1.3E-14 4.3E-19 121.5 15.4 124 132-255 117-276 (287)
81 4eqf_A PEX5-related protein; a 99.6 4.5E-15 1.5E-19 127.4 13.0 118 138-255 183-302 (365)
82 2r5s_A Uncharacterized protein 99.6 9E-15 3.1E-19 113.2 13.1 124 131-255 39-165 (176)
83 2xcb_A PCRH, regulatory protei 99.6 7.7E-16 2.6E-20 115.1 6.8 103 153-255 5-107 (142)
84 3u4t_A TPR repeat-containing p 99.6 2.4E-14 8.1E-19 117.6 16.1 123 133-255 75-200 (272)
85 2ho1_A Type 4 fimbrial biogene 99.6 2.6E-14 9E-19 116.1 16.2 122 134-255 73-196 (252)
86 3uq3_A Heat shock protein STI1 99.6 2.1E-14 7.3E-19 116.4 15.7 114 131-244 138-257 (258)
87 1hh8_A P67PHOX, NCF-2, neutrop 99.6 3.5E-14 1.2E-18 112.6 16.5 109 133-241 38-162 (213)
88 4eqf_A PEX5-related protein; a 99.6 1.7E-14 5.7E-19 123.9 15.6 132 132-263 99-279 (365)
89 2vq2_A PILW, putative fimbrial 99.6 2.3E-14 7.8E-19 113.8 15.2 124 132-255 76-203 (225)
90 2ho1_A Type 4 fimbrial biogene 99.6 1.5E-14 5.2E-19 117.5 14.4 124 132-255 37-162 (252)
91 3qky_A Outer membrane assembly 99.6 8.4E-15 2.9E-19 120.3 12.5 117 132-248 52-199 (261)
92 3iz5_K 60S ribosomal protein L 99.6 7.8E-17 2.7E-21 124.5 -0.2 83 10-106 4-88 (206)
93 3cv0_A Peroxisome targeting si 99.6 3.9E-14 1.3E-18 118.9 15.1 124 132-255 172-307 (327)
94 3hym_B Cell division cycle pro 99.6 3E-14 1E-18 119.8 14.4 123 133-255 160-291 (330)
95 3hym_B Cell division cycle pro 99.6 4.5E-14 1.5E-18 118.7 15.1 124 132-255 90-214 (330)
96 2y4t_A DNAJ homolog subfamily 99.6 6.8E-14 2.3E-18 123.1 16.5 125 131-255 25-164 (450)
97 3mkr_A Coatomer subunit epsilo 99.6 1E-13 3.5E-18 116.3 16.7 133 132-264 130-268 (291)
98 2pzi_A Probable serine/threoni 99.6 3.3E-14 1.1E-18 132.7 15.1 121 143-264 402-533 (681)
99 2zkr_j 60S ribosomal protein L 99.6 1.5E-15 5.3E-20 117.2 4.2 62 13-87 2-72 (203)
100 2kat_A Uncharacterized protein 99.5 9.2E-14 3.1E-18 99.7 12.6 100 150-249 3-104 (115)
101 1qqe_A Vesicular transport pro 99.5 3.4E-14 1.2E-18 119.0 11.8 134 131-264 76-232 (292)
102 2l6j_A TPR repeat-containing p 99.5 6.2E-15 2.1E-19 104.5 6.2 90 134-223 6-101 (111)
103 1fch_A Peroxisomal targeting s 99.5 2.2E-13 7.7E-18 116.5 17.2 124 132-255 132-306 (368)
104 3ieg_A DNAJ homolog subfamily 99.5 1.4E-13 4.9E-18 116.7 15.6 123 133-255 72-209 (359)
105 3upv_A Heat shock protein STI1 99.5 3.3E-14 1.1E-18 103.6 9.9 93 163-255 1-93 (126)
106 2gw1_A Mitochondrial precursor 99.5 1.2E-13 4.2E-18 123.1 15.1 104 129-233 3-106 (514)
107 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.4E-14 1.2E-18 116.5 10.0 121 143-263 16-143 (275)
108 2vsy_A XCC0866; transferase, g 99.5 5.3E-14 1.8E-18 128.5 11.9 119 145-263 2-123 (568)
109 4gcn_A Protein STI-1; structur 99.5 5.3E-14 1.8E-18 103.2 9.4 91 165-255 7-104 (127)
110 2y4t_A DNAJ homolog subfamily 99.5 4.5E-13 1.5E-17 117.8 17.0 124 132-255 60-198 (450)
111 2kck_A TPR repeat; tetratricop 99.5 8.5E-14 2.9E-18 98.2 10.0 103 161-263 1-109 (112)
112 2l6j_A TPR repeat-containing p 99.5 3.2E-13 1.1E-17 95.5 12.2 91 165-255 3-99 (111)
113 3sz7_A HSC70 cochaperone (SGT) 99.5 1.1E-13 3.6E-18 105.8 10.3 102 162-263 7-111 (164)
114 1hxi_A PEX5, peroxisome target 99.5 1.1E-13 3.8E-18 100.6 9.6 96 167-262 18-116 (121)
115 2hr2_A Hypothetical protein; a 99.5 7.2E-14 2.5E-18 105.6 8.7 90 166-255 11-123 (159)
116 3fp2_A TPR repeat-containing p 99.5 1.8E-13 6.3E-18 122.9 12.8 123 133-255 277-399 (537)
117 4g1t_A Interferon-induced prot 99.5 1.2E-12 4E-17 116.0 17.7 132 132-263 51-207 (472)
118 2fo7_A Synthetic consensus TPR 99.5 1.3E-12 4.5E-17 94.6 14.8 101 133-233 36-136 (136)
119 3fp2_A TPR repeat-containing p 99.5 4.6E-13 1.6E-17 120.3 14.9 124 131-255 242-365 (537)
120 3q49_B STIP1 homology and U bo 99.5 2.4E-13 8.4E-18 100.0 10.8 96 160-255 3-98 (137)
121 3jyw_M 60S ribosomal protein L 99.5 7.6E-15 2.6E-19 111.4 2.5 78 18-107 1-78 (178)
122 3edt_B KLC 2, kinesin light ch 99.5 1.4E-13 4.7E-18 112.9 10.1 125 131-255 42-190 (283)
123 1qqe_A Vesicular transport pro 99.5 2E-13 6.8E-18 114.4 10.9 122 134-255 39-179 (292)
124 1p5q_A FKBP52, FK506-binding p 99.5 1.2E-14 4E-19 124.5 3.2 120 145-264 126-263 (336)
125 2xpi_A Anaphase-promoting comp 99.5 8.3E-13 2.8E-17 120.4 15.7 124 132-255 373-496 (597)
126 2xpi_A Anaphase-promoting comp 99.5 1E-12 3.5E-17 119.8 16.0 122 134-255 443-571 (597)
127 1na3_A Designed protein CTPR2; 99.5 8.2E-13 2.8E-17 90.0 11.7 84 165-248 8-91 (91)
128 3cv0_A Peroxisome targeting si 99.5 2.9E-13 9.8E-18 113.6 11.3 115 141-255 147-261 (327)
129 3ma5_A Tetratricopeptide repea 99.4 8.1E-13 2.8E-17 92.6 10.7 91 161-251 2-94 (100)
130 2ond_A Cleavage stimulation fa 99.4 1.9E-12 6.5E-17 109.1 14.0 124 132-255 99-224 (308)
131 2kc7_A BFR218_protein; tetratr 99.4 2.9E-13 1E-17 94.1 7.2 91 136-234 4-95 (99)
132 2gw1_A Mitochondrial precursor 99.4 6.5E-13 2.2E-17 118.5 11.3 123 133-255 339-470 (514)
133 1na3_A Designed protein CTPR2; 99.4 4.7E-12 1.6E-16 86.1 13.0 84 131-214 8-91 (91)
134 3edt_B KLC 2, kinesin light ch 99.4 5.9E-13 2E-17 109.1 9.8 126 130-255 83-273 (283)
135 3mkr_A Coatomer subunit epsilo 99.4 3.7E-12 1.3E-16 106.7 14.4 127 132-263 101-232 (291)
136 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 4.7E-14 1.6E-18 125.8 2.6 120 145-264 247-384 (457)
137 1ouv_A Conserved hypothetical 99.4 8.9E-12 3.1E-16 102.6 15.9 118 132-255 38-171 (273)
138 3rkv_A Putative peptidylprolyl 99.4 8.9E-13 3.1E-17 100.3 9.1 99 166-264 11-130 (162)
139 1dce_A Protein (RAB geranylger 99.4 5.7E-12 2E-16 115.0 15.9 121 131-251 62-195 (567)
140 3dra_A Protein farnesyltransfe 99.4 1.3E-11 4.5E-16 103.9 16.0 124 132-255 103-241 (306)
141 3ulq_A Response regulator aspa 99.4 1.5E-12 5.1E-17 112.7 10.4 126 130-255 141-285 (383)
142 2lni_A Stress-induced-phosphop 99.4 2.6E-12 9E-17 93.4 10.0 94 162-255 12-105 (133)
143 2qfc_A PLCR protein; TPR, HTH, 99.4 1.4E-11 4.8E-16 102.9 15.5 121 133-253 116-255 (293)
144 3ro3_A PINS homolog, G-protein 99.4 2E-12 6.9E-17 96.8 9.3 126 130-255 7-150 (164)
145 3dra_A Protein farnesyltransfe 99.4 9.1E-12 3.1E-16 104.9 13.8 118 132-249 67-195 (306)
146 2fbn_A 70 kDa peptidylprolyl i 99.4 4.2E-13 1.4E-17 105.6 5.1 125 139-263 11-154 (198)
147 2ond_A Cleavage stimulation fa 99.4 7.8E-12 2.7E-16 105.3 13.0 124 132-255 50-190 (308)
148 3u3w_A Transcriptional activat 99.4 3.3E-12 1.1E-16 106.8 10.4 122 134-255 117-258 (293)
149 3nf1_A KLC 1, kinesin light ch 99.4 2.3E-12 7.8E-17 107.2 9.4 126 130-255 67-216 (311)
150 4a1s_A PINS, partner of inscut 99.4 2.5E-12 8.5E-17 111.8 9.9 120 130-249 46-181 (411)
151 1elw_A TPR1-domain of HOP; HOP 99.4 1E-11 3.5E-16 88.0 11.4 98 165-262 3-103 (118)
152 1a17_A Serine/threonine protei 99.3 2E-11 6.8E-16 92.2 13.5 98 132-229 47-146 (166)
153 1dce_A Protein (RAB geranylger 99.3 1.9E-11 6.6E-16 111.6 15.7 84 132-215 107-193 (567)
154 2ifu_A Gamma-SNAP; membrane fu 99.3 3.4E-12 1.2E-16 107.6 9.8 124 131-255 75-216 (307)
155 2dba_A Smooth muscle cell asso 99.3 1.1E-11 3.6E-16 91.9 11.4 103 161-263 23-131 (148)
156 3nf1_A KLC 1, kinesin light ch 99.3 2.7E-12 9.2E-17 106.8 9.0 126 130-255 109-299 (311)
157 3dss_A Geranylgeranyl transfer 99.3 3.4E-11 1.2E-15 102.1 15.8 118 132-249 64-194 (331)
158 2xev_A YBGF; tetratricopeptide 99.3 6.2E-12 2.1E-16 91.3 9.7 89 167-255 3-97 (129)
159 1ouv_A Conserved hypothetical 99.3 1.2E-10 4.1E-15 95.8 17.9 119 131-255 109-243 (273)
160 1na0_A Designed protein CTPR3; 99.3 2.6E-11 8.9E-16 86.7 12.0 95 161-255 3-98 (125)
161 3ulq_A Response regulator aspa 99.3 4.5E-12 1.5E-16 109.7 9.3 122 134-255 105-245 (383)
162 2c2l_A CHIP, carboxy terminus 99.3 7.1E-12 2.4E-16 104.4 10.1 93 163-255 1-93 (281)
163 2vyi_A SGTA protein; chaperone 99.3 9E-12 3.1E-16 89.9 9.4 102 161-262 7-111 (131)
164 2qfc_A PLCR protein; TPR, HTH, 99.3 1.1E-10 3.6E-15 97.5 17.1 126 130-255 73-217 (293)
165 3ro2_A PINS homolog, G-protein 99.3 7.1E-12 2.4E-16 104.9 9.1 118 132-249 5-138 (338)
166 4g1t_A Interferon-induced prot 99.3 2E-11 7E-16 108.0 12.0 123 133-255 137-268 (472)
167 3gw4_A Uncharacterized protein 99.3 7E-12 2.4E-16 98.1 7.9 124 132-255 26-168 (203)
168 3q15_A PSP28, response regulat 99.3 1.4E-11 4.8E-16 106.5 10.5 127 129-255 138-282 (378)
169 3dss_A Geranylgeranyl transfer 99.3 5.4E-11 1.8E-15 100.9 13.7 104 131-234 107-227 (331)
170 3sf4_A G-protein-signaling mod 99.3 1.1E-11 3.8E-16 107.0 9.4 124 132-255 187-328 (406)
171 3sf4_A G-protein-signaling mod 99.3 1.3E-11 4.4E-16 106.5 9.5 118 132-249 9-142 (406)
172 2ifu_A Gamma-SNAP; membrane fu 99.3 1.2E-11 4.1E-16 104.2 8.9 121 134-255 38-176 (307)
173 1pc2_A Mitochondria fission pr 99.3 7.3E-11 2.5E-15 88.1 12.1 100 148-247 14-118 (152)
174 2kc7_A BFR218_protein; tetratr 99.3 7.3E-11 2.5E-15 81.7 11.2 80 169-248 3-85 (99)
175 2if4_A ATFKBP42; FKBP-like, al 99.3 6.9E-12 2.4E-16 107.3 7.0 103 134-236 232-335 (338)
176 3rjv_A Putative SEL1 repeat pr 99.3 2.8E-11 9.5E-16 96.5 10.1 110 133-246 51-174 (212)
177 3q7a_A Farnesyltransferase alp 99.3 4.7E-11 1.6E-15 101.9 11.9 118 132-249 88-216 (349)
178 3q7a_A Farnesyltransferase alp 99.3 1.1E-10 3.7E-15 99.6 14.1 111 141-251 63-176 (349)
179 1elr_A TPR2A-domain of HOP; HO 99.2 2E-11 7E-16 88.1 8.2 92 164-255 2-100 (131)
180 1wao_1 Serine/threonine protei 99.2 7.8E-12 2.7E-16 112.0 7.0 102 132-233 40-154 (477)
181 4a1s_A PINS, partner of inscut 99.2 1.2E-11 4E-16 107.5 7.0 124 132-255 223-364 (411)
182 1zu2_A Mitochondrial import re 99.2 3.5E-11 1.2E-15 90.7 8.1 70 131-200 35-125 (158)
183 3k9i_A BH0479 protein; putativ 99.2 1.4E-10 4.7E-15 83.2 10.9 78 130-207 25-102 (117)
184 3q15_A PSP28, response regulat 99.2 1.7E-10 6E-15 99.6 13.2 101 131-231 181-292 (378)
185 3ro2_A PINS homolog, G-protein 99.2 3E-11 1E-15 101.0 8.1 124 132-255 183-324 (338)
186 3rjv_A Putative SEL1 repeat pr 99.2 1.7E-10 5.9E-15 91.8 11.5 119 132-255 18-150 (212)
187 4f3v_A ESX-1 secretion system 99.2 2.1E-10 7.1E-15 94.9 12.1 110 134-244 137-251 (282)
188 3u3w_A Transcriptional activat 99.2 1.7E-10 5.8E-15 96.3 11.6 122 134-255 77-217 (293)
189 2ooe_A Cleavage stimulation fa 99.2 4.3E-10 1.5E-14 101.6 13.9 124 132-255 321-446 (530)
190 4f3v_A ESX-1 secretion system 99.2 6.5E-11 2.2E-15 98.0 7.7 121 134-255 104-229 (282)
191 3ma5_A Tetratricopeptide repea 99.1 3E-10 1E-14 79.2 9.9 80 132-211 7-88 (100)
192 1ihg_A Cyclophilin 40; ppiase 99.1 4.1E-10 1.4E-14 97.5 12.9 93 130-222 271-363 (370)
193 2r5s_A Uncharacterized protein 99.1 7.5E-10 2.6E-14 85.2 12.8 82 147-228 89-172 (176)
194 3ro3_A PINS homolog, G-protein 99.1 6.4E-10 2.2E-14 82.9 11.1 101 132-232 49-161 (164)
195 3bee_A Putative YFRE protein; 99.1 1E-09 3.6E-14 75.6 10.7 74 162-235 2-78 (93)
196 3gw4_A Uncharacterized protein 99.1 3.7E-10 1.3E-14 88.2 8.2 113 142-255 2-128 (203)
197 3n71_A Histone lysine methyltr 99.1 4.3E-10 1.5E-14 100.6 9.0 130 126-255 303-456 (490)
198 3qou_A Protein YBBN; thioredox 99.0 1.1E-09 3.7E-14 91.3 10.5 85 144-228 197-283 (287)
199 1hz4_A MALT regulatory protein 99.0 1.6E-09 5.6E-14 93.0 10.9 124 132-255 53-195 (373)
200 2ooe_A Cleavage stimulation fa 99.0 2.4E-09 8.3E-14 96.6 12.5 124 132-255 272-412 (530)
201 2kat_A Uncharacterized protein 99.0 3E-09 1E-13 75.7 10.2 80 133-212 20-101 (115)
202 2v5f_A Prolyl 4-hydroxylase su 99.0 1E-08 3.5E-13 72.0 11.9 73 169-241 8-87 (104)
203 1klx_A Cysteine rich protein B 99.0 1.2E-08 4.2E-13 75.5 12.9 98 138-241 31-136 (138)
204 1hz4_A MALT regulatory protein 99.0 4E-09 1.4E-13 90.5 11.2 124 132-255 14-156 (373)
205 3qww_A SET and MYND domain-con 98.9 1.3E-08 4.4E-13 89.7 13.6 111 131-241 297-428 (433)
206 2v5f_A Prolyl 4-hydroxylase su 98.9 1.6E-08 5.6E-13 71.0 11.4 77 132-208 5-88 (104)
207 3ly7_A Transcriptional activat 98.9 1.2E-08 3.9E-13 87.2 12.4 132 132-264 196-343 (372)
208 1nzn_A CGI-135 protein, fissio 98.9 2.9E-08 1E-12 71.4 11.8 101 147-247 16-121 (126)
209 2xm6_A Protein corresponding t 98.9 5.4E-08 1.8E-12 86.9 15.9 119 131-255 74-208 (490)
210 3e4b_A ALGK; tetratricopeptide 98.9 1.5E-08 5.1E-13 89.9 11.8 107 134-245 178-294 (452)
211 2xm6_A Protein corresponding t 98.9 6.5E-08 2.2E-12 86.4 15.9 119 131-255 110-244 (490)
212 3qwp_A SET and MYND domain-con 98.9 4.1E-08 1.4E-12 86.5 13.8 116 132-247 287-426 (429)
213 1klx_A Cysteine rich protein B 98.8 2.7E-08 9.3E-13 73.6 10.0 102 146-255 9-118 (138)
214 3e4b_A ALGK; tetratricopeptide 98.7 8.8E-08 3E-12 85.0 12.1 102 136-246 217-330 (452)
215 3u64_A Protein TP_0956; tetrat 98.6 1.4E-07 4.8E-12 77.6 9.6 86 147-232 178-272 (301)
216 1b89_A Protein (clathrin heavy 98.6 1.2E-07 4.1E-12 83.0 9.1 104 134-247 124-254 (449)
217 3bee_A Putative YFRE protein; 98.6 3.3E-07 1.1E-11 62.9 9.5 68 132-199 6-76 (93)
218 1xi4_A Clathrin heavy chain; a 98.6 6.4E-07 2.2E-11 87.7 13.3 115 128-255 1101-1242(1630)
219 3n71_A Histone lysine methyltr 98.6 1.8E-07 6.1E-12 83.7 8.8 99 131-229 350-464 (490)
220 1xi4_A Clathrin heavy chain; a 98.6 6.1E-07 2.1E-11 87.8 12.9 106 134-247 1197-1327(1630)
221 3mv2_B Coatomer subunit epsilo 98.6 5.6E-07 1.9E-11 75.3 11.2 120 135-255 103-232 (310)
222 3mv2_B Coatomer subunit epsilo 98.5 2.3E-06 7.8E-11 71.6 14.8 116 131-249 135-270 (310)
223 1pc2_A Mitochondria fission pr 98.5 4.7E-07 1.6E-11 67.5 8.9 79 132-210 32-115 (152)
224 4b4t_Q 26S proteasome regulato 98.5 1.9E-07 6.6E-12 81.4 7.8 121 135-255 7-156 (434)
225 4b4t_Q 26S proteasome regulato 98.5 5.1E-07 1.7E-11 78.7 9.4 124 132-255 55-196 (434)
226 1y8m_A FIS1; mitochondria, unk 98.4 1.8E-05 6.2E-10 57.7 14.3 85 163-247 36-124 (144)
227 3u64_A Protein TP_0956; tetrat 98.4 3.7E-06 1.3E-10 69.2 11.3 134 130-263 104-272 (301)
228 3o48_A Mitochondria fission 1 98.4 7.4E-06 2.5E-10 59.1 11.4 84 164-247 38-125 (134)
229 3ly7_A Transcriptional activat 98.3 5.2E-06 1.8E-10 70.8 11.2 78 160-239 271-348 (372)
230 1b89_A Protein (clathrin heavy 98.1 3.4E-06 1.2E-10 73.8 6.1 126 130-255 146-303 (449)
231 3ffl_A Anaphase-promoting comp 98.1 2.6E-05 8.8E-10 58.5 10.0 110 134-244 22-165 (167)
232 3qww_A SET and MYND domain-con 97.9 2.6E-05 8.9E-10 68.6 8.3 72 131-202 339-423 (433)
233 3qwp_A SET and MYND domain-con 97.9 3.1E-05 1.1E-09 68.1 7.7 81 131-211 328-424 (429)
234 1nzn_A CGI-135 protein, fissio 97.8 0.0001 3.5E-09 52.9 8.4 79 132-210 35-118 (126)
235 4e6h_A MRNA 3'-END-processing 97.8 0.00024 8.4E-09 65.9 12.1 117 133-249 344-484 (679)
236 4e6h_A MRNA 3'-END-processing 97.7 0.00028 9.5E-09 65.6 12.4 122 134-255 436-562 (679)
237 3o48_A Mitochondria fission 1 97.6 0.00087 3E-08 48.3 10.6 78 133-210 41-122 (134)
238 1y8m_A FIS1; mitochondria, unk 97.6 0.0011 3.8E-08 48.3 11.3 78 133-210 40-121 (144)
239 4h7y_A Dual specificity protei 97.3 0.013 4.3E-07 43.2 13.7 99 149-249 36-142 (161)
240 2ff4_A Probable regulatory pro 97.3 0.0091 3.1E-07 51.6 15.2 96 133-228 116-233 (388)
241 3ffl_A Anaphase-promoting comp 97.2 0.0021 7.3E-08 48.1 9.1 80 130-210 61-165 (167)
242 2uy1_A Cleavage stimulation fa 97.2 0.014 4.7E-07 52.1 15.5 116 132-249 213-369 (493)
243 3kae_A CDC27, possible protein 97.1 0.029 1E-06 42.2 14.0 98 137-239 38-153 (242)
244 1ya0_A SMG-7 transcript varian 96.6 0.015 5E-07 51.9 10.8 80 168-247 154-233 (497)
245 4gns_B Protein CSD3, chitin bi 96.5 0.0071 2.4E-07 56.5 8.3 60 168-227 339-398 (754)
246 2uy1_A Cleavage stimulation fa 96.5 0.068 2.3E-06 47.6 14.2 113 134-251 288-401 (493)
247 4gns_B Protein CSD3, chitin bi 96.4 0.013 4.6E-07 54.7 9.1 60 133-192 338-397 (754)
248 4h7y_A Dual specificity protei 96.3 0.012 4E-07 43.4 6.8 94 160-254 7-114 (161)
249 1ya0_A SMG-7 transcript varian 96.3 0.036 1.2E-06 49.4 11.1 80 133-212 153-232 (497)
250 4g26_A Pentatricopeptide repea 96.2 0.071 2.4E-06 47.6 12.8 109 134-243 107-219 (501)
251 4g26_A Pentatricopeptide repea 96.0 0.2 6.9E-06 44.7 14.5 111 145-255 83-196 (501)
252 1zbp_A Hypothetical protein VP 95.8 0.21 7E-06 40.5 12.4 63 140-202 5-67 (273)
253 1zbp_A Hypothetical protein VP 95.6 0.078 2.7E-06 42.9 9.4 65 175-239 6-70 (273)
254 3kae_A CDC27, possible protein 95.6 0.37 1.3E-05 36.3 12.1 117 139-263 9-146 (242)
255 3txn_A 26S proteasome regulato 95.2 0.26 8.8E-06 42.5 11.9 92 137-228 104-209 (394)
256 4b4t_R RPN7, 26S proteasome re 94.8 0.23 8E-06 43.3 10.6 96 135-230 134-238 (429)
257 3mkq_B Coatomer subunit alpha; 93.6 0.78 2.7E-05 34.7 10.0 83 131-226 33-115 (177)
258 3mkq_A Coatomer beta'-subunit; 93.5 0.39 1.3E-05 44.7 10.0 47 141-192 661-707 (814)
259 2ff4_A Probable regulatory pro 93.4 0.43 1.5E-05 41.0 9.3 61 134-194 173-233 (388)
260 4b4t_P 26S proteasome regulato 93.0 2.9 9.8E-05 36.5 14.1 99 131-229 136-247 (445)
261 3spa_A Mtrpol, DNA-directed RN 92.3 3.5 0.00012 40.0 14.3 97 134-230 129-231 (1134)
262 4fhn_B Nucleoporin NUP120; pro 91.5 1.7 5.7E-05 42.9 11.9 111 141-255 821-959 (1139)
263 3mkq_A Coatomer beta'-subunit; 90.0 1.1 3.8E-05 41.7 8.8 27 132-158 681-707 (814)
264 2w2u_A Hypothetical P60 katani 89.9 1.1 3.6E-05 29.3 6.1 34 128-161 15-48 (83)
265 3mkq_B Coatomer subunit alpha; 89.6 4.3 0.00015 30.6 10.1 80 139-223 12-99 (177)
266 2v6y_A AAA family ATPase, P60 89.4 1 3.4E-05 29.4 5.7 33 129-161 8-40 (83)
267 4b4t_S RPN3, 26S proteasome re 88.0 1 3.6E-05 40.0 6.5 85 166-250 231-327 (523)
268 4fhn_B Nucleoporin NUP120; pro 87.0 3.6 0.00012 40.5 10.4 114 135-249 845-986 (1139)
269 4gq2_M Nucleoporin NUP120; bet 86.6 8.5 0.00029 37.1 12.6 97 138-238 816-936 (950)
270 1qsa_A Protein (soluble lytic 85.1 3.8 0.00013 37.4 8.9 101 143-250 263-363 (618)
271 2vkj_A TM1634; membrane protei 85.1 4.5 0.00015 26.5 6.7 48 130-177 51-101 (106)
272 1wfd_A Hypothetical protein 15 84.8 2.1 7.3E-05 28.5 5.4 32 130-161 13-44 (93)
273 4a5x_A MITD1, MIT domain-conta 84.6 2 6.7E-05 28.2 5.0 31 131-161 15-45 (86)
274 3lpz_A GET4 (YOR164C homolog); 84.2 17 0.00059 30.3 13.6 95 130-224 33-160 (336)
275 2v6x_A Vacuolar protein sortin 84.1 2.4 8.4E-05 27.6 5.4 33 129-161 10-42 (85)
276 3txn_A 26S proteasome regulato 83.7 18 0.00063 30.9 12.1 85 171-255 104-202 (394)
277 3mkr_B Coatomer subunit alpha; 83.4 18 0.00061 29.9 12.7 103 135-237 105-235 (320)
278 1wy6_A Hypothetical protein ST 82.8 11 0.00038 27.3 8.5 88 145-239 74-162 (172)
279 2cpt_A SKD1 protein, vacuolar 82.3 2.8 9.6E-05 29.3 5.3 33 129-161 15-47 (117)
280 3ax2_A Mitochondrial import re 81.7 4.9 0.00017 25.4 5.8 34 135-168 20-53 (73)
281 2cfu_A SDSA1; SDS-hydrolase, l 81.7 2.5 8.4E-05 39.0 6.3 57 199-255 448-504 (658)
282 3spa_A Mtrpol, DNA-directed RN 81.0 22 0.00075 34.7 12.4 85 167-251 128-217 (1134)
283 3ax2_A Mitochondrial import re 81.0 6.5 0.00022 24.8 6.1 38 205-242 22-59 (73)
284 1qsa_A Protein (soluble lytic 80.4 8.3 0.00028 35.2 9.2 118 137-255 219-340 (618)
285 2cfu_A SDSA1; SDS-hydrolase, l 77.0 4.6 0.00016 37.2 6.5 51 132-182 449-499 (658)
286 2ijq_A Hypothetical protein; s 75.6 22 0.00074 26.2 9.4 60 135-194 35-103 (161)
287 2crb_A Nuclear receptor bindin 74.8 6.1 0.00021 26.1 4.8 25 168-192 17-41 (97)
288 2crb_A Nuclear receptor bindin 73.9 9 0.00031 25.3 5.4 29 132-160 15-43 (97)
289 4b4t_R RPN7, 26S proteasome re 72.6 13 0.00045 32.0 8.0 75 166-240 131-210 (429)
290 2wpv_A GET4, UPF0363 protein Y 72.5 39 0.0013 27.8 12.7 27 198-224 132-158 (312)
291 3t5v_B Nuclear mRNA export pro 72.1 13 0.00046 32.4 7.9 88 146-233 140-254 (455)
292 1om2_A Protein (mitochondrial 71.6 4.1 0.00014 27.2 3.5 32 135-166 23-54 (95)
293 1wy6_A Hypothetical protein ST 71.2 26 0.00087 25.4 7.7 55 141-195 100-154 (172)
294 2rpa_A Katanin P60 ATPase-cont 69.7 5.1 0.00017 25.7 3.5 28 134-161 14-41 (78)
295 3t5x_A PCI domain-containing p 68.7 13 0.00045 28.5 6.4 33 167-199 15-47 (203)
296 4gq4_A Menin; tumor suppressor 67.4 41 0.0014 29.0 9.4 84 146-244 259-353 (489)
297 1om2_A Protein (mitochondrial 67.2 9.4 0.00032 25.4 4.5 35 206-240 26-60 (95)
298 4b4t_S RPN3, 26S proteasome re 65.6 74 0.0025 28.3 12.0 100 132-238 270-382 (523)
299 4b4t_P 26S proteasome regulato 64.4 70 0.0024 27.6 11.8 66 130-195 175-247 (445)
300 3t5x_A PCI domain-containing p 64.2 30 0.001 26.4 7.7 37 130-166 12-48 (203)
301 4gq2_M Nucleoporin NUP120; bet 61.2 29 0.00099 33.4 8.5 52 172-227 816-867 (950)
302 2yhe_A SEC-alkyl sulfatase; hy 64.8 1.8 6.1E-05 40.0 0.0 55 201-255 462-516 (668)
303 3re2_A Predicted protein; meni 57.2 83 0.0028 26.6 9.3 48 197-244 293-346 (472)
304 2dl1_A Spartin; SPG20, MIT, st 56.4 46 0.0016 23.0 6.5 33 128-160 18-50 (116)
305 2o8p_A 14-3-3 domain containin 55.6 72 0.0024 24.9 8.7 61 134-194 122-196 (227)
306 2wb7_A PT26-6P; extra chromoso 55.6 78 0.0027 27.9 9.2 22 207-228 494-515 (526)
307 3mv2_A Coatomer subunit alpha; 55.2 89 0.003 25.8 16.1 118 135-253 117-260 (325)
308 2cwy_A Hypothetical protein TT 54.7 43 0.0015 22.1 6.3 57 136-194 5-67 (94)
309 2w2u_A Hypothetical P60 katani 54.3 20 0.00067 23.2 4.2 18 210-227 29-46 (83)
310 2v6y_A AAA family ATPase, P60 51.7 23 0.00077 22.8 4.2 17 218-234 36-52 (83)
311 2yhe_A SEC-alkyl sulfatase; hy 56.5 3.2 0.00011 38.3 0.0 55 130-184 459-513 (668)
312 3myv_A SUSD superfamily protei 51.1 45 0.0015 28.9 7.4 29 200-228 190-218 (454)
313 3t5v_B Nuclear mRNA export pro 49.5 69 0.0024 27.9 8.2 65 135-199 179-254 (455)
314 3u84_A Menin; MLL, JUND, ledgf 48.9 1.3E+02 0.0043 26.1 9.2 89 140-243 265-367 (550)
315 2rpa_A Katanin P60 ATPase-cont 48.7 18 0.00061 23.1 3.2 26 203-228 15-40 (78)
316 3kez_A Putative sugar binding 47.7 51 0.0017 28.6 7.2 29 200-228 196-224 (461)
317 2oo2_A Hypothetical protein AF 47.1 48 0.0016 21.5 5.2 33 126-158 29-61 (86)
318 4a5x_A MITD1, MIT domain-conta 46.3 31 0.001 22.4 4.2 22 207-228 23-44 (86)
319 2pmr_A Uncharacterized protein 46.3 50 0.0017 21.5 5.2 32 127-158 34-65 (87)
320 3lew_A SUSD-like carbohydrate 45.5 59 0.002 28.5 7.4 27 202-228 205-231 (495)
321 1wcr_A PTS system, N, N'-diace 45.2 65 0.0022 21.7 5.8 38 123-160 9-46 (103)
322 3k1s_A PTS system, cellobiose- 44.8 68 0.0023 21.8 5.9 39 122-160 12-50 (109)
323 2e2a_A Protein (enzyme IIA); h 44.6 67 0.0023 21.7 5.8 38 123-160 11-48 (105)
324 3mcx_A SUSD superfamily protei 44.5 54 0.0019 28.5 6.9 27 168-194 204-230 (477)
325 2ijq_A Hypothetical protein; s 43.9 93 0.0032 22.8 8.3 59 170-228 36-103 (161)
326 1wfd_A Hypothetical protein 15 43.1 36 0.0012 22.4 4.2 17 218-234 40-56 (93)
327 3lvg_A Clathrin heavy chain 1; 42.7 0.077 2.6E-06 46.9 -11.3 98 137-247 149-276 (624)
328 2xze_A STAM-binding protein; h 42.3 45 0.0015 24.0 5.0 35 127-161 35-69 (146)
329 2f1e_A Protein APAG; APAG prot 41.8 10 0.00035 26.8 1.4 14 13-26 48-61 (127)
330 1xvs_A Protein APAG; MCSG APC2 41.1 11 0.00037 26.6 1.5 14 13-26 47-60 (126)
331 2v6x_A Vacuolar protein sortin 40.4 54 0.0018 20.9 4.8 18 211-228 24-41 (85)
332 2br9_A 14-3-3E, 14-3-3 protein 39.6 1.1E+02 0.0038 23.9 7.2 44 150-193 148-200 (234)
333 3l8r_A PTCA, putative PTS syst 39.5 80 0.0027 21.9 5.7 38 123-160 28-65 (120)
334 2rkl_A Vacuolar protein sortin 39.5 56 0.0019 19.0 5.9 37 125-161 13-49 (53)
335 2npm_A 14-3-3 domain containin 37.6 1.1E+02 0.0037 24.4 7.0 45 149-193 173-225 (260)
336 2cpt_A SKD1 protein, vacuolar 37.5 52 0.0018 22.7 4.5 18 218-235 43-60 (117)
337 1tza_A APAG protein, SOR45; st 36.9 14 0.00046 26.4 1.4 14 13-26 47-60 (134)
338 3re2_A Predicted protein; meni 36.7 83 0.0028 26.6 6.2 44 151-194 276-324 (472)
339 2a9u_A Ubiquitin carboxyl-term 36.4 75 0.0026 22.8 5.4 42 128-169 38-82 (144)
340 3lew_A SUSD-like carbohydrate 36.1 1E+02 0.0034 27.0 7.3 47 148-194 174-231 (495)
341 3myv_A SUSD superfamily protei 35.3 85 0.0029 27.1 6.7 47 148-194 164-218 (454)
342 3kez_A Putative sugar binding 34.7 1E+02 0.0035 26.7 7.1 47 148-194 170-224 (461)
343 3qnk_A Putative lipoprotein; a 34.6 1.1E+02 0.0036 27.0 7.2 28 201-228 183-210 (517)
344 3lxu_X Tripeptidyl-peptidase 2 34.5 1.9E+02 0.0066 29.0 9.4 62 187-249 1270-1332(1354)
345 2jpu_A ORF C02003 protein; sol 34.4 64 0.0022 22.7 4.6 30 131-160 6-35 (129)
346 3ubw_A 14-3-3E, 14-3-3 protein 34.4 1.5E+02 0.0051 23.6 7.2 14 179-192 212-225 (261)
347 3uzd_A 14-3-3 protein gamma; s 34.3 1.5E+02 0.0052 23.4 7.2 45 149-193 148-201 (248)
348 1o9d_A 14-3-3-like protein C; 34.2 1.5E+02 0.0051 23.6 7.2 45 149-193 152-205 (260)
349 1xq4_A Protein APAG; all beta 33.8 15 0.0005 26.4 1.2 14 13-26 52-65 (139)
350 2ynq_A ESSB; membrane protein, 33.5 1.4E+02 0.0048 21.8 8.4 84 135-224 11-97 (161)
351 3u84_A Menin; MLL, JUND, ledgf 33.4 98 0.0033 26.8 6.2 45 150-194 297-346 (550)
352 2ymb_A MITD1, MIT domain-conta 33.2 9 0.00031 30.6 0.0 32 130-161 21-52 (257)
353 2v2f_A Penicillin binding prot 32.3 16 0.00053 17.6 0.8 15 17-31 7-21 (26)
354 3eab_A Spastin; spastin, MIT, 31.9 53 0.0018 21.5 3.5 31 130-160 14-47 (89)
355 3hdx_A SUSD homolog, SUSD supe 31.3 1.2E+02 0.0041 26.3 7.0 29 167-195 198-226 (478)
356 2npu_A FKBP12-rapamycin comple 30.3 1.3E+02 0.0045 21.0 5.6 53 139-194 47-102 (126)
357 3mcx_A SUSD superfamily protei 30.3 1E+02 0.0035 26.7 6.4 49 182-230 176-232 (477)
358 4gq4_A Menin; tumor suppressor 29.4 1.2E+02 0.0042 26.1 6.2 45 150-194 282-331 (489)
359 3jq1_A SUSD superfamily protei 27.3 92 0.0031 27.1 5.5 45 149-193 155-207 (481)
360 1o3u_A Conserved hypothetical 27.3 1.6E+02 0.0054 20.5 7.6 32 129-160 13-44 (135)
361 2ca5_A MXIH; transport protein 26.9 89 0.0031 20.1 3.8 26 218-243 28-53 (85)
362 3esl_A Checkpoint serine/threo 26.4 2.2E+02 0.0074 21.7 11.7 66 166-232 80-147 (202)
363 4b4t_O 26S proteasome regulato 26.4 2.9E+02 0.0099 23.2 10.6 88 141-228 85-197 (393)
364 3s6n_M SurviVal motor neuron p 26.3 52 0.0018 17.3 2.2 14 216-229 18-31 (37)
365 2o8p_A 14-3-3 domain containin 24.4 2.5E+02 0.0086 21.8 9.9 72 179-250 138-224 (227)
366 3bu8_A Telomeric repeat-bindin 24.3 1.2E+02 0.0041 23.5 4.8 113 134-246 18-160 (235)
367 3snx_A SUSD homolog, putative 24.3 1.4E+02 0.0046 25.9 6.0 31 199-229 190-220 (460)
368 4aez_C MAD3, mitotic spindle c 23.8 2.6E+02 0.0087 21.7 10.1 50 183-232 131-182 (223)
369 3snx_A SUSD homolog, putative 23.3 1.9E+02 0.0064 25.0 6.7 30 166-195 191-220 (460)
370 2zan_A Vacuolar protein sortin 23.0 18 0.0006 31.4 0.0 33 129-161 8-40 (444)
371 2dl1_A Spartin; SPG20, MIT, st 22.6 1.4E+02 0.0048 20.5 4.5 18 180-197 17-34 (116)
372 4ady_A RPN2, 26S proteasome re 22.4 4.3E+02 0.015 25.5 9.2 95 134-228 492-588 (963)
373 3esl_A Checkpoint serine/threo 22.2 1.4E+02 0.0049 22.7 5.0 30 132-161 115-144 (202)
374 2e2a_A Protein (enzyme IIA); h 21.8 1.1E+02 0.0039 20.6 3.9 33 196-228 16-48 (105)
375 2g0u_A Type III secretion syst 21.5 1.8E+02 0.0061 19.1 4.9 29 216-244 32-60 (92)
376 3iqu_A 14-3-3 protein sigma; s 21.3 3E+02 0.01 21.5 6.9 45 149-193 150-203 (236)
377 3hdx_A SUSD homolog, SUSD supe 21.2 2E+02 0.0069 24.9 6.5 30 200-229 197-226 (478)
378 4aez_C MAD3, mitotic spindle c 21.2 1.5E+02 0.0052 23.0 5.0 32 132-163 150-181 (223)
379 2pm7_A Protein WEB1, protein t 20.9 3.6E+02 0.012 22.8 7.8 111 136-250 252-383 (399)
No 1
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=9e-34 Score=208.37 Aligned_cols=107 Identities=50% Similarity=0.887 Sum_probs=101.6
Q ss_pred Cchhhh-hhccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCC
Q psy6284 1 MSAYER-VKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHH 79 (270)
Q Consensus 1 ~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~ 79 (270)
|++|.. .++|++|++.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|||+||+++.+||.++.+|.|++|
T Consensus 1 m~t~~~k~~~~~~~~r~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~~D~Gd~VVViNaeki~~tG~k~~~K~yy~h 80 (148)
T 2ftc_H 1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNKWEQKVYSSH 80 (148)
T ss_pred CcccccchhhhhcccCcEEEEeCCCCchHHHHHHHHHHHhccCCCCcCccccCCCEEEEEeceeeEeccchHhhheeeee
Confidence 777765 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhhhhhccCcchhhhhhh
Q psy6284 80 TGYPGGVSWTLAWQLHEIDPTLDKACEE 107 (270)
Q Consensus 80 t~y~~g~~~~~~~~l~~~~p~~~~~~~~ 107 (270)
++||+|.+..+..+++.+.|+.++....
T Consensus 81 tg~pGg~k~~~~~~~~~r~P~~ii~~aV 108 (148)
T 2ftc_H 81 TGYPGGFRQVTAAQLHLRDPVAIVKLAI 108 (148)
T ss_pred eCCcCCceeccHHHHhhcCHHHHHHHHH
Confidence 9999999998899999999999887665
No 2
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=99.97 E-value=2.6e-31 Score=193.18 Aligned_cols=96 Identities=25% Similarity=0.407 Sum_probs=92.6
Q ss_pred cccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhh
Q psy6284 12 TFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLA 91 (270)
Q Consensus 12 ~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~ 91 (270)
++++.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|+|+||+++.+||++++++.|++||+||+|.+..++
T Consensus 8 ~~~r~w~viDA~~~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGglk~~~~ 87 (140)
T 3v2d_N 8 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPL 87 (140)
T ss_dssp CCCCCEEEEECSSSBTTHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCEEEEECSSTTCEEEEEH
T ss_pred cccceEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcceEccCchhhheeeEEecccCCcceeccH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcchhhhhhh
Q psy6284 92 WQLHEIDPTLDKACEE 107 (270)
Q Consensus 92 ~~l~~~~p~~~~~~~~ 107 (270)
.+++.+.|+.++....
T Consensus 88 ~~~~~r~P~~ii~~aV 103 (140)
T 3v2d_N 88 EKMLATHPERVLEHAV 103 (140)
T ss_dssp HHHHHHCTHHHHHHHH
T ss_pred HHhhhhCHHHHHHHHH
Confidence 9999999999987655
No 3
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=99.97 E-value=5.9e-31 Score=191.77 Aligned_cols=99 Identities=28% Similarity=0.440 Sum_probs=94.0
Q ss_pred ccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcch
Q psy6284 9 QWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSW 88 (270)
Q Consensus 9 ~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~ 88 (270)
...++++.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|||+||+++.+||.++++|.|++|++||+|.+.
T Consensus 7 ~~~~~~r~W~viDA~g~~LGRLAs~iAk~L~GKhKp~ytP~~d~Gd~VVViNaeki~~tG~k~~~K~yy~htgypGg~k~ 86 (142)
T 3r8s_J 7 KPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQ 86 (142)
T ss_dssp CTTTCCCCEEEEECTTCBHHHHHHHHHHHHHTTTSTTCCTTSCCCCEEEEECGGGCBCCTTHHHHCBCCEECSSTTCEEC
T ss_pred ChhhccCcEEEEeCCCCchHHHHHHHHHHHcCCCCCccCCCccCCCEEEEEeCcccCccCchhhceEEEEecCcCCCccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcchhhhhhh
Q psy6284 89 TLAWQLHEIDPTLDKACEE 107 (270)
Q Consensus 89 ~~~~~l~~~~p~~~~~~~~ 107 (270)
.++.+++.+.|+.++....
T Consensus 87 ~~~~~~~~r~P~~ii~~aV 105 (142)
T 3r8s_J 87 ATFEEMIARRPERVIEIAV 105 (142)
T ss_dssp CBHHHHHHHCSHHHHHHHH
T ss_pred cCHHHHHhhCHHHHHHHHH
Confidence 9999999999999887654
No 4
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A {Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Probab=99.96 E-value=7.4e-31 Score=194.09 Aligned_cols=96 Identities=25% Similarity=0.407 Sum_probs=92.7
Q ss_pred cccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhh
Q psy6284 12 TFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLA 91 (270)
Q Consensus 12 ~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~ 91 (270)
++++.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|||+||+++.+||+++++|.|++||+||+|.+..+.
T Consensus 31 ~~~r~W~VIDA~g~~LGRLAs~VAk~L~GKhKP~ytP~~D~GD~VVVINaekI~iTG~K~~~K~yy~htgypGglk~~t~ 110 (163)
T 3f1f_N 31 QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQKIYTRYSGYPGGLKKIPL 110 (163)
T ss_dssp CCCCCBCBBCCTTCBHHHHHHHHHHHHSCTTSTTCCTTTCCCCBCEECCGGGCBCSTTHHHHCEECCBCSSTTCBCCEEH
T ss_pred cccCcEEEEeCCCCchHHHHHHHHHHHhcCCCCccCCcccCCCEEEEEeCcccccCCchhhheeeEEecCcCCcceeeeh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCcchhhhhhh
Q psy6284 92 WQLHEIDPTLDKACEE 107 (270)
Q Consensus 92 ~~l~~~~p~~~~~~~~ 107 (270)
.+++.+.|+.++....
T Consensus 111 ~~~~~r~P~~Ii~~AV 126 (163)
T 3f1f_N 111 EKMLATHPERVLEHAV 126 (163)
T ss_dssp HHHHHSSCHHHHHHHH
T ss_pred HHhhhcCHHHHHHHHH
Confidence 9999999999987665
No 5
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=99.96 E-value=2.4e-30 Score=193.70 Aligned_cols=95 Identities=26% Similarity=0.388 Sum_probs=91.5
Q ss_pred ccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhh
Q psy6284 13 FARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAW 92 (270)
Q Consensus 13 ~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~ 92 (270)
+++.|+||||+|++|||+|+.||+.|+|||||+|||++||||+|||+||+++.+||.++++|.|++|++||||.+..++.
T Consensus 37 ~~r~W~vIDA~g~~LGRLAs~IAk~L~GKhKP~ytP~~D~GD~VVVINAeki~lTG~K~~~K~yy~htgypGGlk~~~~~ 116 (174)
T 2zjr_G 37 DEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDKVYTRYTGYQGGLKTETAR 116 (174)
T ss_dssp SCCCEEEEECTTSBHHHHHHHHHHHHHCSSCSSCCSSSCCCCEEEEECCTTCBCSSCSSSSCEEEECCSSCSSCCEEEES
T ss_pred ccccEEEEeCCCCchHHHHHHHHHHHhccCCCccCccccCCCEEEEEeCeeeEeccchhhceEEEEecCcCCCcccccHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCcchhhhhhh
Q psy6284 93 QLHEIDPTLDKACEE 107 (270)
Q Consensus 93 ~l~~~~p~~~~~~~~ 107 (270)
+++.+.|+.++....
T Consensus 117 ~~~~r~P~~Ii~~AV 131 (174)
T 2zjr_G 117 EALSKHPERVIEHAV 131 (174)
T ss_dssp TTTTSCHHHHHHHHH
T ss_pred HHhhcChHHHHHHHH
Confidence 999999999887665
No 6
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.95 E-value=2e-29 Score=196.71 Aligned_cols=100 Identities=26% Similarity=0.336 Sum_probs=90.1
Q ss_pred hccccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcc
Q psy6284 8 KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVS 87 (270)
Q Consensus 8 ~~~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~ 87 (270)
.+|.++.+.||||||+|++|||+|+.||+.|+|||||+|||++|+||+|||+||+++.++|.++.+|.|++|++||||.+
T Consensus 105 ~~v~~~~r~W~VIDA~g~vLGRLAS~IAk~LrGKhKP~ytP~vD~GD~VVVINAeKI~lTG~K~~~K~Y~rHsgyPGGlK 184 (250)
T 3bbo_L 105 ADHVPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKKRTQKLYRRHSGRPGGLK 184 (250)
T ss_dssp -------CCCCEECCSSCCSSTTHHHHTTTTTTTTTTCCCTTSCCSCCCEESCCSSCCCCSGGGGTCCCBCCCSSSSCCC
T ss_pred hhcccccceEEEEeCCCCchHHHHHHHHHHHccCCCCccCccccCCCEEEEEecceEEecCChhhceEEEEecCcCCCcc
Confidence 45556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccCcchhhhhhh
Q psy6284 88 WTLAWQLHEIDPTLDKACEE 107 (270)
Q Consensus 88 ~~~~~~l~~~~p~~~~~~~~ 107 (270)
..++.+++.+.|+.++....
T Consensus 185 ~~t~~~l~~r~PerIi~kAV 204 (250)
T 3bbo_L 185 EETFDQLQKRIPERIIEHAV 204 (250)
T ss_dssp BCCHHHHTTSCTTHHHHHHH
T ss_pred cccHHHhhhcChHHHHHHHH
Confidence 99999999999999887654
No 7
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.92 E-value=8.5e-24 Score=155.99 Aligned_cols=115 Identities=28% Similarity=0.558 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
+.++.++++|+.+++.|+|++|+..|+++++++|.++.+|+++|.|+..+|++++|+.+|++++.++|+++.+|+++|.+
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
+..+|++++|+++|+++++++|++..++..++.|+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999998874
No 8
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.87 E-value=4.7e-22 Score=150.58 Aligned_cols=121 Identities=16% Similarity=0.167 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-------DAV-----FFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-------~~~-----~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
.....+..+++.|+.+++.|+|++|+..|+++|+++|+ +.. +|+|+|.|+..+|+|++|+.+|+++|.
T Consensus 6 ~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 6 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44567888999999999999999999999999999999 444 999999999999999999999999999
Q ss_pred c-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 195 L-------DNTYVKAY----QRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 195 ~-------~p~~~~a~----~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
+ +|++.++| +++|.++..+|++++|+.+|+++++++|++..+...+..+....
T Consensus 86 l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 9 99999999 99999999999999999999999999999998888888776554
No 9
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.86 E-value=2.2e-21 Score=148.69 Aligned_cols=129 Identities=24% Similarity=0.352 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHccCHHHHHHH
Q psy6284 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT------------------YPHDAVFFANRALCFLKMKNYVSAEAD 188 (270)
Q Consensus 127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~------------------~p~~~~~~~~~a~~~~~~~~~~~A~~~ 188 (270)
+++..+..+++.|+.+++.|+|++|+..|.+++.+ +|.+..+++++|.|++.+|++++|+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 45567788999999999999999999999999999 677779999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhCCCCCcch
Q psy6284 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK-QAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 189 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|++++.++|.++.+|+++|.++..+|++++|+.+|+++++++|+++ .+...+..+...++...+..+
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k 153 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSR 153 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 788899999887766544433
No 10
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.5e-20 Score=135.20 Aligned_cols=117 Identities=21% Similarity=0.406 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..++..|..+++.|+|++|+..|+++++++|.++.+++++|.|+..+|++++|+.+|++++.++|+++.+++.+|.++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHh
Q psy6284 211 RSLNHFEDARKDILKVLALE------PNNKQAEIELAELNRKL 247 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~------p~~~~a~~~l~~~~~~~ 247 (270)
..+|++++|+..|+++++++ |++..++..+..+..++
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 99999999999999999999 99999999999988764
No 11
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.84 E-value=4.6e-20 Score=139.94 Aligned_cols=119 Identities=12% Similarity=-0.053 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
....++..|..+++.|+|++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|++++.++|+++.+++.+|.++
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELL 109 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 211 RSLNHFEDARKD-ILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 211 ~~~g~~~~A~~~-~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
..+|++++|... ++++++++|+++.++..++.++...|+
T Consensus 110 ~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 110 CKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 999999887776 599999999999999999999887775
No 12
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.84 E-value=1.1e-19 Score=133.85 Aligned_cols=114 Identities=21% Similarity=0.304 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-------VK 201 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~ 201 (270)
.+.+..+++.|+.+++.|+|++|+.+|+++|+++|+++.+|+++|.||..+|++++|+.+|++++.++|.+ ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999998865 46
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 243 (270)
+++++|.++..+|++++|++.|++++..+|+ +.....+..+
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l 125 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL 125 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence 8999999999999999999999999999885 5555555443
No 13
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.83 E-value=3.9e-19 Score=134.98 Aligned_cols=104 Identities=10% Similarity=0.002 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..++..|..+++.|+|++|+..|++++.++|.++.+|+++|.|+..+|++++|+.+|++++.++|+++.+|+++|.++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 45578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCH
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNK 234 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~ 234 (270)
..+|++++|+..|+++++++|+.+
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999876
No 14
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.83 E-value=3.5e-19 Score=140.84 Aligned_cols=141 Identities=28% Similarity=0.347 Sum_probs=127.6
Q ss_pred CcccccchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHH
Q psy6284 114 DEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA----------------VFFANRALCFL 177 (270)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~----------------~~~~~~a~~~~ 177 (270)
.+.....+.+...+....+..+...|..++..|+|++|+..|.+++.+.|.++ .+++++|.|+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 99 (198)
T 2fbn_A 20 QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN 99 (198)
T ss_dssp --CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566667778888999999999999999999999999999999987 89999999999
Q ss_pred HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcc
Q psy6284 178 KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPI 254 (270)
Q Consensus 178 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~ 254 (270)
.+|++++|+.+|++++.++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..++.
T Consensus 100 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 100 KNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888766655
No 15
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.82 E-value=5.6e-20 Score=157.72 Aligned_cols=132 Identities=32% Similarity=0.487 Sum_probs=123.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHccCHHHHHHH
Q psy6284 124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---------------AVFFANRALCFLKMKNYVSAEAD 188 (270)
Q Consensus 124 ~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~~~ 188 (270)
........+..++..|+.+++.|+|++|+..|++++.++|.+ ..+++++|.|++.+|++++|+.+
T Consensus 139 a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 218 (336)
T 1p5q_A 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES 218 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334456778889999999999999999999999999999999 69999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 189 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|++++.++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.++..+|+..++..
T Consensus 219 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998876633
No 16
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.82 E-value=3.6e-19 Score=166.55 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+.+.|..+.+.|++++|+..|+++++++|++..+|+++|.++..+|++++|+.+|+++++++|++..+|+++|.++.
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~ 122 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 122 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+|++++|++.|+++++++|++..++.+++.++..+|+..+++.
T Consensus 123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 77777777777777777777777777777777777777666655
No 17
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.81 E-value=3.8e-20 Score=140.37 Aligned_cols=127 Identities=14% Similarity=0.034 Sum_probs=116.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFE 217 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~ 217 (270)
.|..+..+|++++|+..|.+++..+|.++.+++++|.+|+.+|++++|+..|++++.++|+++.+|+.+|.++..+|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 47788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch----HhhhcCCCc
Q psy6284 218 DARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK----VDFLHNPYH 264 (270)
Q Consensus 218 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~----~~~~~~~~~ 264 (270)
+|+..|+++++++|+++.++..++.++..+|+..+++. +.+..+|.+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~ 133 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC
Confidence 99999999999999999999999999999999988764 456666654
No 18
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.81 E-value=4.6e-20 Score=164.64 Aligned_cols=134 Identities=29% Similarity=0.467 Sum_probs=120.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHHHccCHHHHH
Q psy6284 122 EEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---------------AVFFANRALCFLKMKNYVSAE 186 (270)
Q Consensus 122 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---------------~~~~~~~a~~~~~~~~~~~A~ 186 (270)
.+........+..++..|+.+++.|+|++|+..|+++++++|.+ ..+|+|+|.|+++++++++|+
T Consensus 258 ~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~ 337 (457)
T 1kt0_A 258 EMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAV 337 (457)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 34444566788899999999999999999999999999999998 689999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 187 ADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 187 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+|++++.++|++.++++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++.+
T Consensus 338 ~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 338 ECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988766544
No 19
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.81 E-value=1.2e-18 Score=133.65 Aligned_cols=118 Identities=23% Similarity=0.367 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..++..|..++..|+|++|+..|+++++++|.++.+++++|.|+..+|++++|+.+|++++.++|++..+|+.+|.++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHhC
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIE--LAELNRKLN 248 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~--l~~~~~~~~ 248 (270)
..+|++++|+.+|+++++++|++..++.. +..+..+++
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 129 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE 129 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999885544 444444443
No 20
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.80 E-value=2.4e-18 Score=130.17 Aligned_cols=117 Identities=13% Similarity=0.056 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
....+...|..++..|+|++|+..|++++..+|.++.+|+++|.++..+|++++|+.+|++++.++|+++.+++.+|.++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
..+|++++|+..|+++++++|+++........+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 136 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXELSTRVSSML 136 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHH
Confidence 9999999999999999999999876655555554433
No 21
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.79 E-value=2.2e-18 Score=129.16 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...+...|..++..|+|++|+..|++++..+|.++.+|+++|.++..+|++++|+.+|++++.++|+++.+++.+|.++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
.+|++++|+..|+++++++|+++........+...+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 999999999999999999999887777666665544
No 22
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=2.3e-18 Score=150.13 Aligned_cols=122 Identities=11% Similarity=0.034 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN-YVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
.+...|..+...|++++|+..|+++|.++|.+..+|+++|.++..+|+ +++|+.+|++++.++|++..+|+.+|.++..
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 445555555666666666666666666666666666666666666664 6666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+|++++|+.+|+++|+++|++..+|..++.++..+|++.+++.
T Consensus 179 ~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~ 221 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQ 221 (382)
T ss_dssp HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHH
Confidence 6666666666666666666666666666666666666555554
No 23
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.79 E-value=2.4e-18 Score=137.41 Aligned_cols=118 Identities=19% Similarity=0.143 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHhc
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFAN----------------RALCFLKMKNYVSAEADCTASLKL 195 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~----------------~a~~~~~~~~~~~A~~~~~~al~~ 195 (270)
+..+..+|..++..|+|++|+..|+++++.+|+++.+++. +|.++..+|++++|+..|++++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4467888999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 196 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
+|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999999998865543
No 24
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=1.8e-18 Score=138.99 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHhcCCCCH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM-----------KNYVSAEADCTASLKLDNTYV 200 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~-----------~~~~~A~~~~~~al~~~p~~~ 200 (270)
+..+...|..+...|++++|+..|+++++++|+++.+++++|.++..+ |++++|+..+++++.++|++.
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~ 118 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA 118 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH
Confidence 556778888888888888888888888888888888888888888888 888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
.+++.+|.++..+|++++|+..|+++++++ +++.++..++.++..+|++.+++. ..+..+|.
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 183 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPK 183 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888888888888888 888888888888888888887766 44445554
No 25
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.79 E-value=5.1e-18 Score=132.09 Aligned_cols=129 Identities=14% Similarity=0.204 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH------------------------------
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV------------------------------ 183 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~------------------------------ 183 (270)
.+.+.|..++..|+|++|+..|+++++++|+++.++.++|.++..+|+++
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMI 86 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHc
Confidence 45566666666666666666666666666666666666666665555555
Q ss_pred ----HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---H
Q psy6284 184 ----SAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---V 256 (270)
Q Consensus 184 ----~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~ 256 (270)
.|+..+.+++.++|.+..+++.+|.++..+|++++|++.|+++++++|++..++..++.++..+|++.+|+. +
T Consensus 87 ~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 166 (184)
T 3vtx_A 87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK 166 (184)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 455555555556666677777788888888888888888888888888888888888888888888777766 4
Q ss_pred hhhcCC
Q psy6284 257 DFLHNP 262 (270)
Q Consensus 257 ~~~~~~ 262 (270)
.+-.+|
T Consensus 167 al~~~p 172 (184)
T 3vtx_A 167 ALEKEE 172 (184)
T ss_dssp HHHTTH
T ss_pred HHhCCc
Confidence 444444
No 26
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.78 E-value=2.9e-17 Score=119.43 Aligned_cols=121 Identities=35% Similarity=0.479 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
..+..+...|..++..|++++|+..|.+++...|.++.++.++|.++..+|++++|+..+++++..+|.+..+++.+|.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
+..+|++++|+..|+++++++|++..++..++.++..+|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999998875
No 27
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.78 E-value=6.5e-18 Score=158.11 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
..+..+.+.|+.+.+.|++++|+..|+++|+++|++..+++++|.++..+|++++|+..|+++++++|++..+|+++|.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
+..+|++++|++.|+++++++|++..++.+++.++..+|++.+|+. +.+..+|..
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999987 566666643
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.78 E-value=7.2e-18 Score=135.48 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Q psy6284 132 AVYSKEQGNKLVKE-----------GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV 200 (270)
Q Consensus 132 a~~~~~~g~~~~~~-----------g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 200 (270)
+..+...|..+... |++++|+..|+++++++|+++.+++++|.++..+|++++|+..|++++.++ +++
T Consensus 73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 151 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCH
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cch
Confidence 55688899999999 999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++.+++.
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAAR 206 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988876
No 29
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.78 E-value=9.5e-18 Score=122.77 Aligned_cols=118 Identities=29% Similarity=0.501 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...++..|..++..|+|++|+..|+++++.+|.+..+++++|.++..++++++|+..+++++.++|.+..+++.+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 44688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
.+|++++|+..|+++++++|++..++..++.++..+|+
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999988764
No 30
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=9.9e-18 Score=135.01 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP-HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
..++..|..++..|+|++|+..|+++++++| .+..+++++|.|+..+|++++|+..|++++.++|.+..+++.+|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 4688899999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 212 SLNHFEDARKDILKVLALEPNNK-------QAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~-------~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
.+|++++|+..|+++++++|+++ .++..++.++..+|++.+|+. ..+..+|.
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 149 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSK 149 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCH
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999 779999999999999998887 44444553
No 31
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.77 E-value=1.5e-19 Score=155.22 Aligned_cols=132 Identities=30% Similarity=0.402 Sum_probs=103.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHccC
Q psy6284 119 SDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-----------------VFFANRALCFLKMKN 181 (270)
Q Consensus 119 ~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-----------------~~~~~~a~~~~~~~~ 181 (270)
..+.+...+++..+..++..|+.+++.|+|++|+..|.+++.+.|.+. .+++++|.|++.+++
T Consensus 166 ~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 166 ARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR 245 (338)
T ss_dssp TTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555567788889999999999999999999999999999999887 499999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
+++|+.+|++++.++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.+.......
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986555443
No 32
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.77 E-value=4e-17 Score=116.61 Aligned_cols=115 Identities=32% Similarity=0.467 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..+...|..++..|++++|+..|.+++...|.++.+++++|.++..+|++++|+..+++++..+|.+..+++.+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 245 (270)
..+|++++|+..|+++++++|++..++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999988754
No 33
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=99.76 E-value=5.3e-20 Score=134.98 Aligned_cols=81 Identities=15% Similarity=-0.054 Sum_probs=73.8
Q ss_pred ccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhh
Q psy6284 11 NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTL 90 (270)
Q Consensus 11 ~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~ 90 (270)
+.+.+.|+||||+|++|||+|+.||+.|+ +||+|+|+||+++.+||+++.+|.|++|++||++ +
T Consensus 3 ~a~~~~w~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~htg~~g~----~ 66 (145)
T 1vq8_J 3 VAEFDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGN----D 66 (145)
T ss_dssp -CCCCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCC----S
T ss_pred ccccccEEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCEeeEecchhhhheeeeEEeCCCCC----C
Confidence 34678899999999999999999999999 9999999999999999999999999999999997 5
Q ss_pred hhhhhccCcchhhhhhh
Q psy6284 91 AWQLHEIDPTLDKACEE 107 (270)
Q Consensus 91 ~~~l~~~~p~~~~~~~~ 107 (270)
..+++.+.|+.++....
T Consensus 67 ~~~~~~r~P~~i~~~aV 83 (145)
T 1vq8_J 67 NGYFYPKRPDGIFKRTI 83 (145)
T ss_dssp SCCCCCCSHHHHHHHHH
T ss_pred HHHHhhcChHHHHHHHH
Confidence 67888899988887554
No 34
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.76 E-value=7.1e-18 Score=146.49 Aligned_cols=131 Identities=26% Similarity=0.393 Sum_probs=121.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHccCHHHHHHH
Q psy6284 125 DLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ----------------TYPHDAVFFANRALCFLKMKNYVSAEAD 188 (270)
Q Consensus 125 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~----------------~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 188 (270)
..+....+..++..|+.+++.|+|++|+..|+++++ .+|.+..+++++|.|+++++++++|+.+
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 345667788899999999999999999999999999 7778889999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 189 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|++++.++|++.++++++|.++..+|++++|+.+|+++++++|++..++..++.++..+++..++.+
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998877655443
No 35
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.76 E-value=2.5e-17 Score=121.67 Aligned_cols=117 Identities=32% Similarity=0.436 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+...|..++..|+|++|+..|.+++..+|.++.+++++|.|+..+|++++|+..+++++.++|+++.+++.+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHhC
Q psy6284 212 SLNHFEDARKDILKVLALEPN-----NKQAEIELAELNRKLN 248 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~-----~~~a~~~l~~~~~~~~ 248 (270)
.+|++++|+..|+++++++|+ +..+...+..+..+..
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 8888888888876543
No 36
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly, ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Probab=99.76 E-value=1.2e-19 Score=133.24 Aligned_cols=78 Identities=12% Similarity=-0.027 Sum_probs=63.0
Q ss_pred EEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcch-hhhhhhh
Q psy6284 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSW-TLAWQLH 95 (270)
Q Consensus 17 ~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~-~~~~~l~ 95 (270)
|+||||+|++|||+|+.||+.|+ +||+|||+||+++.+||+++.+|.|++|++||+|... .+ .+++
T Consensus 1 W~viDA~g~~LGRLAs~vAk~L~------------~Gd~VVViNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~-~~~~ 67 (142)
T 1j3a_A 1 MRIINADGLILGRLASRVAKMLL------------EGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRR-GPFY 67 (142)
T ss_dssp CEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHC--------------C
T ss_pred CEEEeCCCCchHHHHHHHHHHHh------------cCCEEEEEeCeeeEecccHHhheeeeeecCCCCCCcCCcc-Cccc
Confidence 99999999999999999999999 9999999999999999999999999999999999665 55 7888
Q ss_pred ccCcchhhhhhh
Q psy6284 96 EIDPTLDKACEE 107 (270)
Q Consensus 96 ~~~p~~~~~~~~ 107 (270)
.+.|+.++....
T Consensus 68 ~r~P~~ii~~aV 79 (142)
T 1j3a_A 68 PKRSDEIVRRTI 79 (142)
T ss_dssp CCSHHHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 999998887554
No 37
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.76 E-value=3.1e-17 Score=124.76 Aligned_cols=129 Identities=31% Similarity=0.478 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR 206 (270)
Q Consensus 127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 206 (270)
+....+..+...|..++..|+|++|+..|.+++...|.+..+++++|.++..+|++++|+..+++++.++|.+..+++.+
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 87 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 34566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhCCCCCcch
Q psy6284 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL--NRKLNIPLSPIK 255 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~--~~~~~~~~~a~~ 255 (270)
|.++..+|++++|+..|+++++++|++..++..++.+ +...|++.+++.
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999666666 666677777665
No 38
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.76 E-value=1e-17 Score=122.26 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=92.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
++..|..++..|++++|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++.++|++..+++.+|.++..+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 56679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHH
Q psy6284 215 HFEDARKDILKVLALEPNNKQ 235 (270)
Q Consensus 215 ~~~~A~~~~~~al~~~p~~~~ 235 (270)
++++|+..|+++++++|++..
T Consensus 100 ~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHhCcCCCC
Confidence 999999999999999998764
No 39
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=1.4e-17 Score=145.20 Aligned_cols=134 Identities=10% Similarity=0.011 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGK-WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~-~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
.+..+..+|..+...|+ +++|+..|++++.++|++..+|+++|.++..+|++++|+.+|++++.++|.+..+|+.+|.+
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~ 209 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHH
Confidence 36678999999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC-CCcc-----h---HhhhcCCCc
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP-LSPI-----K---VDFLHNPYH 264 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~-~~a~-----~---~~~~~~~~~ 264 (270)
+..+|++++|+.+|+++|+++|++..+|..++.++..++.. .+++ . ..+..+|.+
T Consensus 210 ~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~ 273 (382)
T 2h6f_A 210 IQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN 273 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC
Confidence 99999999999999999999999999999999999995444 6663 2 555556643
No 40
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.75 E-value=8e-17 Score=125.26 Aligned_cols=103 Identities=18% Similarity=0.101 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...+...|..+...++++.|+..+.+++..+|.+..++..+|.++..+|++++|+..|++++.++|.++.+++.+|.++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~ 152 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYE 152 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 55677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH
Q psy6284 212 SLNHFEDARKDILKVLALEPNNK 234 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~ 234 (270)
.+|++++|+..|+++++++|+++
T Consensus 153 ~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 153 GKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HTTCHHHHHHHHHHHHHTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhCCccCH
Confidence 99999999999999999999764
No 41
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1e-16 Score=119.58 Aligned_cols=115 Identities=31% Similarity=0.490 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
+..++..|..++..|+|++|+..|+++++..|++ ..+++++|.++..++++++|+..|++++.++|.+..+++.+|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 3467888999999999999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
++..+|++++|+..|+++++++|++..++..+..+...
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998887643
No 42
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.73 E-value=1.5e-18 Score=131.72 Aligned_cols=110 Identities=15% Similarity=0.015 Sum_probs=103.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 153 EKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 153 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
..|++++.++|+++.+++++|.+++.+|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCcch---HhhhcCC
Q psy6284 233 NKQAEIELAELNRKLNIPLSPIK---VDFLHNP 262 (270)
Q Consensus 233 ~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~ 262 (270)
++.++..++.++..+|++.+|+. +.+...|
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999887 4444444
No 43
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.73 E-value=6.2e-16 Score=111.35 Aligned_cols=117 Identities=27% Similarity=0.349 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+...|..++..|++++|+..|.+++...|.+..++.++|.++...|++++|+..+++++..+|.+..+++.+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 44678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
..|++++|+..|+++++++|++..++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999987654
No 44
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.72 E-value=4.6e-16 Score=113.59 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA---VFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRRA 207 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g 207 (270)
.++..|..++..|+|++|+..|.++++..|+++ .+++++|.++..+|++++|+..|++++..+|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 357789999999999999999999999999998 799999999999999999999999999999999 89999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhC
Q psy6284 208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 248 (270)
.++..+|++++|+..|+++++..|+++.+...+..+....+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998888877765443
No 45
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.72 E-value=2.6e-17 Score=121.01 Aligned_cols=108 Identities=19% Similarity=0.121 Sum_probs=99.8
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284 157 VAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236 (270)
Q Consensus 157 ~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a 236 (270)
++..++|+...++.++|.++++.|+|++|+..|++++.++|.++.+|+.+|.++..+|++++|+.+|+++++++|++..+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 237 EIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
+..++.++..+|++.+|+. ..+..+|..
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~ 114 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSN 114 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999988 666667754
No 46
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.72 E-value=2.8e-16 Score=114.26 Aligned_cols=119 Identities=20% Similarity=0.296 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-------HHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY-------VKAY 203 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-------~~a~ 203 (270)
.+..+...|..++..|++++|+..|.+++...|.++.+++++|.++..+|++++|+..+++++.+.|.+ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 356788899999999999999999999999999999999999999999999999999999999998877 9999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 204 QRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 204 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
+.+|.++..+|++++|+..|+++++++| ++.+...++.+...+++.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999 699999999988776543
No 47
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.71 E-value=4.6e-17 Score=122.95 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY----------VSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
.+.|++|+..|+++++++|.++.+|+++|.++..++++ ++|+..|+++|+++|++..+|+++|.+|..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999999999876 59999999999999999999999999999885
Q ss_pred -----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 215 -----------HFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 215 -----------~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
++++|+++|++|++++|++...+..+..+.
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 899999999999999999999988887664
No 48
>4b6a_O 60S ribosomal protein L16-A; large ribosomal subunit, ribosome biogenesis, ribosome matur factor, ribosome; 8.10A {Saccharomyces cerevisiae} PDB: 3izc_K 3izs_K 3o58_P 3o5h_P 3u5e_O 3u5i_O 1s1i_M
Probab=99.70 E-value=2.5e-18 Score=132.12 Aligned_cols=82 Identities=16% Similarity=0.097 Sum_probs=77.2
Q ss_pred cceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhh
Q psy6284 14 ARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQ 93 (270)
Q Consensus 14 ~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~ 93 (270)
+..|+||||+|++|||+|+.||++|+ .||+|+|+||+++.+||.++.++.|++|++||++....+...
T Consensus 3 ~~~~vVIDA~g~vLGRLAS~VAk~L~------------~Gd~VVVVNaeki~iTG~k~~~K~yy~h~g~~gg~~~~~~~~ 70 (199)
T 4b6a_O 3 SQPVVVIDAKDHLLGRLASTIAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGP 70 (199)
T ss_dssp CCSEEEEECTTBBHHHHHHHHHHHHH------------TTCEEEEECGGGCEEESCHHHHHHHHHHHHTCCCTTCTTTSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhc------------CCCEEEEEEchheEEeCcHHHHHHHhhccccccccccCCHHH
Confidence 57899999999999999999999999 699999999999999999999999999999999999999999
Q ss_pred hhccCcchhhhhhh
Q psy6284 94 LHEIDPTLDKACEE 107 (270)
Q Consensus 94 l~~~~p~~~~~~~~ 107 (270)
++.+.|+.++....
T Consensus 71 ~~~r~P~~il~~aV 84 (199)
T 4b6a_O 71 FHFRAPSRILYKAI 84 (199)
T ss_dssp CCCCSHHHHHHHHH
T ss_pred HhhcCcHHHHHHHH
Confidence 99999999887665
No 49
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.70 E-value=1.5e-16 Score=127.97 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-------HHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV-------KAYQRR 206 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-------~a~~~~ 206 (270)
.+...|..++..|++++|+..|.++++.+|.+..++.++|.++..+|++++|+..+++++.++|++. .+++.+
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 123 (228)
T 4i17_A 44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE 123 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 5666899999999999999999999999999999999999999999999999999999999999999 779999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhCCC
Q psy6284 207 AAARRSLNHFEDARKDILKVLALEPN--NKQAEIELAELNRKLNIP 250 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~l~~~~~~~~~~ 250 (270)
|.++..+|++++|+..|+++++++|+ +..++..++.++...|+.
T Consensus 124 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 124 GQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999888776
No 50
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.69 E-value=5.4e-16 Score=123.16 Aligned_cols=121 Identities=19% Similarity=0.202 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..++..|..++..|+|++|+..|.+++ +| ++.+++++|.++..+|++++|+..|++++.++|.+..+++.+|.++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3456667777777777777777777764 22 56677777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNK----------------QAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~----------------~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+|++++|+..|++++++.|++. .++..++.++..+|++.+++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 142 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence 77777777777777777666665 777777777777777766655
No 51
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.69 E-value=1.2e-15 Score=111.00 Aligned_cols=122 Identities=25% Similarity=0.266 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSL 213 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~ 213 (270)
.+...|..++..|++++|+..|.+++...|.+..++.++|.++...+++++|+..+++++...|.+..+++.+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 214 NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 214 g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|++++|+..|+++++.+|.+..++..++.++...|++.++..
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence 999999999999999999999999999999999999888766
No 52
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.68 E-value=6.7e-17 Score=144.89 Aligned_cols=125 Identities=32% Similarity=0.489 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..+...|..+++.|+|++|+..|+++++++|++..+++++|.++..+|++++|+.+|++++.++|++..+++++|.++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 84 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34456677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHhCCCCCcch
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAEL--NRKLNIPLSPIK 255 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~--~~~~~~~~~a~~ 255 (270)
..+|++++|++.|+++++++|++..++..++.+ +...|++.+|+.
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998 777788887776
No 53
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.67 E-value=1.5e-16 Score=114.96 Aligned_cols=107 Identities=17% Similarity=0.082 Sum_probs=95.1
Q ss_pred HcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy6284 144 KEGKWGEAIEKYNVAIQT---YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR 220 (270)
Q Consensus 144 ~~g~~~~A~~~y~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~ 220 (270)
..|++++|+..|++++++ +|+++.+++++|.++..+|++++|+..|++++.++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 368999999999999999 68889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 221 KDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 221 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
..|++++..+|+++.+......+....+..
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999887777666555443
No 54
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.67 E-value=5.8e-16 Score=127.35 Aligned_cols=132 Identities=17% Similarity=0.133 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQR 205 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~ 205 (270)
+..++..|..+++.|+|++|+..|+++++..|.+ +.+++++|.|++.+|++++|+..|++++.+.|++ ..+++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 4468889999999999999999999999999999 8999999999999999999999999999998854 679999
Q ss_pred HHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhCCCCCcch---Hh
Q psy6284 206 RAAARRS--------LNHFEDARKDILKVLALEPNNKQAE-----------------IELAELNRKLNIPLSPIK---VD 257 (270)
Q Consensus 206 ~g~~~~~--------~g~~~~A~~~~~~al~~~p~~~~a~-----------------~~l~~~~~~~~~~~~a~~---~~ 257 (270)
+|.++.. +|++++|+..|+++++.+|++..+. ..++.++...|++.+|+. ..
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 174 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV 174 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999 9999999999999999999997776 788999999999999887 33
Q ss_pred hhcCCC
Q psy6284 258 FLHNPY 263 (270)
Q Consensus 258 ~~~~~~ 263 (270)
+..+|.
T Consensus 175 l~~~p~ 180 (261)
T 3qky_A 175 FDAYPD 180 (261)
T ss_dssp HHHCTT
T ss_pred HHHCCC
Confidence 444443
No 55
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.67 E-value=7.3e-17 Score=121.93 Aligned_cols=104 Identities=11% Similarity=-0.014 Sum_probs=100.6
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284 152 IEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231 (270)
Q Consensus 152 ~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p 231 (270)
-..|++++.++|.+..+++++|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 232 NNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 232 ~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+++.++..++.++..+|++.+|+.
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999998877
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.66 E-value=4.8e-15 Score=113.99 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+...|..++..|++++|+..|.++++..|.+..++.++|.++...|++++|+..+++++..+|.+..+++.+|.++..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 122 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH
Confidence 35778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|++++|+..|+++++.+|++..++..++.++...|++.++..
T Consensus 123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999999988876
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.66 E-value=1.6e-15 Score=126.62 Aligned_cols=102 Identities=35% Similarity=0.504 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..++..|+.++..|+|++|+..|++++..+|+++.+++++|.++..+|++++|+.+|++++.++|++..+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC
Q psy6284 212 SLNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~ 233 (270)
.+|++++|+..|+++++++|++
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999976
No 58
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.66 E-value=2.4e-15 Score=137.36 Aligned_cols=133 Identities=10% Similarity=-0.081 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+...|..++..|++++|+..|+++++++|++..+++++|.++..+|++++|+..|++++.++|++..+++.+|.++.
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 102 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE 102 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 44688889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---CCCCCcch---HhhhcCCCc
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL---NIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~---~~~~~a~~---~~~~~~~~~ 264 (270)
.+|++++|++.|+++++++|++..++..++.++..+ |+..++.. ..+..+|..
T Consensus 103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999 88777766 445555543
No 59
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.65 E-value=2.9e-16 Score=146.64 Aligned_cols=123 Identities=15% Similarity=0.039 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+...|..++..|+|++|+..|+++++.+|++..+++++|.++..+|++++|+..|++++.++|++..+++++|.++.
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~ 512 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAE 512 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+|++++ ++.|+++++++|++..++..++.++..+|++.+|+.
T Consensus 513 ~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 513 LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999 999999999999999999999999999999988876
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.65 E-value=8.6e-15 Score=117.96 Aligned_cols=131 Identities=13% Similarity=0.079 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...+...|..+...|++++|+..|+++++..|.+..++.++|.++..+|++++|+..+++++..+|.+..+++.+|.++.
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCC
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNP 262 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~ 262 (270)
..|++++|+..|+++++.+|++..++..++.++..+|++.+++. ..+..+|
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 99999999999999999999999999999999999999988876 3444444
No 61
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.64 E-value=6.8e-15 Score=117.20 Aligned_cols=79 Identities=14% Similarity=-0.011 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
.+.|..++..|++++|+..|+++++++|+++.+++++|.++..+|++++|+.+|++++.++|+++.+++.+|.+++..|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 4489999999999999999999999999999999999999999999999999999999999999999999998876543
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.64 E-value=4e-15 Score=114.45 Aligned_cols=124 Identities=16% Similarity=0.138 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+...|..++..|++++|+..|++++...|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..|++++|+..|+++++.+|++..++..++.++...|++.+++.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 99999999999999999999999999999999999999988876
No 63
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=1.3e-14 Score=116.91 Aligned_cols=123 Identities=11% Similarity=0.079 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+...|..++..|++++|+..|.++++..|.+..++.++|.++..+|++++|+..+++++..+|.+..+++.+|.++..
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 137 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK 137 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|++++|+..|+++++++|++..++..++.++...|++.+++.
T Consensus 138 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999999999999999999999988877
No 64
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=99.64 E-value=3.3e-17 Score=126.06 Aligned_cols=82 Identities=17% Similarity=0.038 Sum_probs=71.1
Q ss_pred cceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhh
Q psy6284 14 ARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQ 93 (270)
Q Consensus 14 ~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~ 93 (270)
.+.|+||||+|++|||+|+.||+.|+ |||+|||+||+++.+||+++.++.|++|..++.+.......+
T Consensus 2 ~~~w~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINAekI~iTG~K~~~K~yy~~~l~~~~~~~~~~g~ 69 (198)
T 4a17_I 2 FDKLVVIDAKGHLLGRLASYVAKELL------------SGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNHNPRRGV 69 (198)
T ss_dssp CSSCEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHTCCCSSCTTSSC
T ss_pred CccEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCccccccCchhhheeeeeeccccccCCCCcccc
Confidence 36799999999999999999999999 999999999999999999999999998876666655555567
Q ss_pred hhccCcchhhhhhh
Q psy6284 94 LHEIDPTLDKACEE 107 (270)
Q Consensus 94 l~~~~p~~~~~~~~ 107 (270)
++.+.|+.++....
T Consensus 70 ~~~r~P~rIi~~AV 83 (198)
T 4a17_I 70 QHFRAPSRIFWRAV 83 (198)
T ss_dssp CCCCSHHHHHHHHH
T ss_pred ccccCHHHHHHHHH
Confidence 77788888876554
No 65
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.3e-15 Score=120.59 Aligned_cols=124 Identities=23% Similarity=0.215 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHHHccCHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQ--------------------------TYPHDAVFFANRALCFLKMKNYVSA 185 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~--------------------------~~p~~~~~~~~~a~~~~~~~~~~~A 185 (270)
+..+...|..+...|++++|+..|++++. .+|.++.++.++|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 56788889999999999999999999999 5666778999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 186 EADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 186 ~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++.+++.
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888876
No 66
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.64 E-value=7.4e-15 Score=127.22 Aligned_cols=132 Identities=21% Similarity=0.183 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...+...|..++..|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|++++.++|.+..+++.+|.++.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence 44566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
..|++++|+..|+++++++|++..++..++.++...|++.+++. ..+..+|.
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~ 371 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 371 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888888888888888888888776 44444443
No 67
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.63 E-value=6.7e-15 Score=126.06 Aligned_cols=124 Identities=14% Similarity=0.146 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+...|..++..|++++|+..|++++...|.++.+++++|.++..+|++++|+..|++++.++|.+..+++.+|.++.
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNN-----------KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~-----------~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+|++++|+..|+++++++|++ ..++..++.++..+|++.++..
T Consensus 297 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 9999999999999999999998 8999999999999999988765
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=1.5e-15 Score=135.94 Aligned_cols=123 Identities=12% Similarity=0.109 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHhcCCCCHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM---------KNYVSAEADCTASLKLDNTYVKA 202 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~a 202 (270)
+..+...|..++..|++++|+.+|+++++++|+ ..++.++|.++..+ |++++|+..|++++.++|++..+
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 215 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 344555666666666666666666666666666 46666666666666 66666666666666666666666
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 203 YQRRAAARRSL--------NHFEDARKDILKVLALEP---NNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 203 ~~~~g~~~~~~--------g~~~~A~~~~~~al~~~p---~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|+.+|.++..+ |++++|+..|+++++++| ++..++..++.++..+|++.+|+.
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~ 279 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALE 279 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666 666666666666666666 666666666666666666655554
No 69
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.63 E-value=6.2e-16 Score=119.57 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALC-FLKMKNY--VSAEADCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~-~~~~~~~--~~A~~~~~~al~~~p~~~~a~~~~g 207 (270)
....+...|..++..|++++|+..|.+++.++|.++.++.++|.+ +...|++ ++|+..+++++.++|.+..+++.+|
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 122 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 456789999999999999999999999999999999999999999 8899998 9999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 208 AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
.++..+|++++|+..|+++++++|++......+..+.
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN 159 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 9999999999999999999999999876665554443
No 70
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=1.8e-15 Score=124.34 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----HHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY----VKAYQRRAAA 209 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~ 209 (270)
.+...|..++..|+|++|+..|+++++.+|.+..+++++|.++..+|++++|+..|++++. .|.+ ..+++.+|.+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 4566677777888888888888888887777777777788888888888888888887777 3322 4457777888
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+..+|++++|+..|+++++++|++..++..++.++..+|++.+++.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHH
Confidence 8888888888888888888888777788888888777777777665
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.63 E-value=1.1e-15 Score=136.88 Aligned_cols=130 Identities=15% Similarity=0.075 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKW-GEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~-~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
+..+...|..++..|+| ++|+..|+++++++|.++.+++++|.+|..+|++++|+.+|++++.++|+ ..+++.+|.++
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~ 180 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVL 180 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence 56788999999999999 99999999999999999999999999999999999999999999999999 79999999999
Q ss_pred HHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh--------CCCCCcch---HhhhcCC
Q psy6284 211 RSL---------NHFEDARKDILKVLALEPNNKQAEIELAELNRKL--------NIPLSPIK---VDFLHNP 262 (270)
Q Consensus 211 ~~~---------g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~--------~~~~~a~~---~~~~~~~ 262 (270)
..+ |++++|+..|+++++++|++..++..++.++..+ |++.+|+. ..+..+|
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 999 9999999999999999999999999999999998 88888776 4444455
No 72
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.63 E-value=4.4e-15 Score=104.90 Aligned_cols=100 Identities=14% Similarity=0.186 Sum_probs=96.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAAARRS 212 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~ 212 (270)
+...|..++..|++++|+..|+++++..|.+..+++++|.++..+|++++|+..+++++.++|. +..+++.+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 5567999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred c-CCHHHHHHHHHHHHhhCCCCH
Q psy6284 213 L-NHFEDARKDILKVLALEPNNK 234 (270)
Q Consensus 213 ~-g~~~~A~~~~~~al~~~p~~~ 234 (270)
+ |++++|++.|++++..+|.++
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HhCCHHHHHHHHHHHhhcccCCC
Confidence 9 999999999999999999763
No 73
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=1.4e-14 Score=118.93 Aligned_cols=124 Identities=19% Similarity=0.114 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..+...|..++..|++++|+..|.++++.+|.++.++.++|.++..+|++++|+..|++++.++|.+..+++.+|.++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+|++++|+..|+++++++|++..+...+..+ ...|++.+++.
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~ 165 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKE 165 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHH
Confidence 999999999999999999999999777766655 45577666655
No 74
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.62 E-value=1.7e-14 Score=114.54 Aligned_cols=124 Identities=15% Similarity=-0.011 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHh--cCCCCHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM-KNYVSAEADCTASLK--LDNTYVKAYQRRAA 208 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~-~~~~~A~~~~~~al~--~~p~~~~a~~~~g~ 208 (270)
...+...|..+...|++++|+..|.+++...|.+..++.++|.++... |++++|+..+++++. .+|.+..+++.+|.
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 456777888888899999999999999998888888899999999999 999999999999888 66677888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++...|++++|+..|+++++.+|++..++..++.++...|++.+++.
T Consensus 122 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999888888888766
No 75
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.62 E-value=9.3e-15 Score=117.74 Aligned_cols=132 Identities=11% Similarity=-0.010 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHH------------------ccCHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV---FFANRALCFLK------------------MKNYVSAEADCTA 191 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~---~~~~~a~~~~~------------------~~~~~~A~~~~~~ 191 (270)
..++..|..+++.|+|++|+..|+++++..|+++. +++.+|.++.. +|++++|+..|++
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 121 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence 46788899999999999999999999999999864 89999999986 5789999999999
Q ss_pred HHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhCCCC
Q psy6284 192 SLKLDNTYVKAY-----------------QRRAAARRSLNHFEDARKDILKVLALEPNNK---QAEIELAELNRKLNIPL 251 (270)
Q Consensus 192 al~~~p~~~~a~-----------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l~~~~~~~~~~~ 251 (270)
++..+|++..++ +.+|.++...|++++|+..|+++++..|+++ .++..++.++.++|+..
T Consensus 122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 999999987654 6789999999999999999999999999986 78999999999999999
Q ss_pred Ccch--HhhhcCCCc
Q psy6284 252 SPIK--VDFLHNPYH 264 (270)
Q Consensus 252 ~a~~--~~~~~~~~~ 264 (270)
+++. ..+..+++.
T Consensus 202 ~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 202 QAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHhhCCC
Confidence 9877 444444443
No 76
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.62 E-value=8.8e-15 Score=124.22 Aligned_cols=124 Identities=25% Similarity=0.306 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
++.++..|..++..|+|++|+..|+++++.+|.++.+++++|.++..+|++++|+..|++++.++|++..+++.+|.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEP---NNKQAEIEL------------AELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p---~~~~a~~~l------------~~~~~~~~~~~~a~~ 255 (270)
..|++++|+..|+++++++| ++..++..+ +.++...|++.+++.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999999999999 999999888 678888888888776
No 77
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.62 E-value=9.2e-15 Score=126.62 Aligned_cols=120 Identities=15% Similarity=0.074 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
+...|..+...|++++|+..|+++++++|++..++.++|.++...+++++|+..+++++.++|++..+++.+|.++...|
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 251 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 251 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC
Confidence 44445555555555555555555555555544444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcc
Q psy6284 215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPI 254 (270)
Q Consensus 215 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~ 254 (270)
++++|+..|+++++++|+++.++..++.++...|++.+++
T Consensus 252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 291 (388)
T 1w3b_A 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4444444444444444444444444444444444444443
No 78
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.62 E-value=1.4e-14 Score=111.96 Aligned_cols=127 Identities=17% Similarity=0.120 Sum_probs=112.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCCH-
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA-RRSLNHF- 216 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~-~~~~g~~- 216 (270)
+..++..|++++|+..|.+++..+|.++.+++.+|.++...|++++|+..|++++.++|.++.+++.+|.+ +...|++
T Consensus 17 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 17 LHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp TCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 34456788999999999999999999999999999999999999999999999999999999999999999 8899999
Q ss_pred -HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCcc
Q psy6284 217 -EDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYHL 265 (270)
Q Consensus 217 -~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~ 265 (270)
++|+..|+++++++|++..++..++.++...|++.+|+. ..+..+|...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999999999999999999999998877 5555666543
No 79
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.62 E-value=5.5e-15 Score=119.11 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH---HHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA---VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK---AYQR 205 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~---a~~~ 205 (270)
+..++..|..++..|+|++|+..|+++++..|.++ .+++++|.+++.+|++++|+..|++++..+|++.. +++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34678899999999999999999999999999874 79999999999999999999999999999998864 8999
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHhCCC
Q psy6284 206 RAAARRS------------------LNHFEDARKDILKVLALEPNNKQAE-----------------IELAELNRKLNIP 250 (270)
Q Consensus 206 ~g~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~a~-----------------~~l~~~~~~~~~~ 250 (270)
+|.++.. .|++++|+..|+++++.+|++..+. ..++.++...|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 9999886 5799999999999999999998665 4677788889999
Q ss_pred CCcch
Q psy6284 251 LSPIK 255 (270)
Q Consensus 251 ~~a~~ 255 (270)
.+++.
T Consensus 164 ~~A~~ 168 (225)
T 2yhc_A 164 VAVVN 168 (225)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88877
No 80
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.61 E-value=1.3e-14 Score=121.54 Aligned_cols=124 Identities=14% Similarity=0.059 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHH-----------------------
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD----------------------- 188 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~----------------------- 188 (270)
...+...|..+...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 446788899999999999999999999999999999999999999999998887644
Q ss_pred -----------HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCCCCcch
Q psy6284 189 -----------CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN--KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 189 -----------~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+++++..+|++..+++.+|.++...|++++|+..|.++++.+|++ ..++..++.++..+|+..+++.
T Consensus 197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 455577788999999999999999999999999999999999988 8899999999999998877665
No 81
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.61 E-value=4.5e-15 Score=127.44 Aligned_cols=118 Identities=14% Similarity=0.098 Sum_probs=110.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~ 215 (270)
.|..+...|++++|+..|++++...|. ++.+++++|.++..+|++++|+..|++++.++|.+..+++.+|.++..+|+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 262 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR 262 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 488899999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 216 FEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 216 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+++|+..|+++++++|++..++..++.++..+|++.+++.
T Consensus 263 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999999999999999999999998877
No 82
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.61 E-value=9e-15 Score=113.24 Aligned_cols=124 Identities=10% Similarity=0.019 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFL-KMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
....+...|..+...|++++|+..|++++...| ++..+..++.+.+ ..++..+|+..+++++.++|+++.+++.+|.+
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~ 117 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQ 117 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 455667777777777777777777777777777 6665555553322 22344456788888888899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhCCCCCcch
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNN--KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~--~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+...|++++|+..|+++++++|+. ..++..++.++..+|+..+++.
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 999999999999999999999875 5699999999999999887765
No 83
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.61 E-value=7.7e-16 Score=115.10 Aligned_cols=103 Identities=14% Similarity=0.022 Sum_probs=96.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 153 EKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 153 ~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
..|.+++.++|.+..+++++|.+++..|++++|+..|++++.++|.++.+|+.+|.++..+|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 233 NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 233 ~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++.++..++.++..+|++.+++.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999988877
No 84
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=2.4e-14 Score=117.59 Aligned_cols=123 Identities=19% Similarity=0.144 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+...|..+...|++++|+..|+++++.+|.++.++.++|.++..+|++++|+..+++++.++|.+..+++.+|...+.
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999955555
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC---CCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI---PLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~---~~~a~~ 255 (270)
.+++++|+..|+++++++|++..++..++.++..+|+ +.+++.
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~ 200 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKP 200 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHH
Confidence 6699999999999999999999999999999999998 666655
No 85
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=2.6e-14 Score=116.08 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK--LDNTYVKAYQRRAAARR 211 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~ 211 (270)
.+...|..++..|++++|+..|.++++..|.+..++.++|.++..+|++++|+..+++++. .+|.+..+++.+|.++.
T Consensus 73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 4445555555666666666666666665555555556666666666666666666666555 55555555555666665
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..|++++|+..|+++++.+|++..++..++.++...|++.+++.
T Consensus 153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666666666555555555555555555555444
No 86
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.1e-14 Score=116.41 Aligned_cols=114 Identities=22% Similarity=0.414 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..+...|..++..|++++|+..|+++++.+|.++.+++++|.++..+|++++|+..|++++.++|++..+++.+|.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 45668889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHH
Q psy6284 211 RSLNHFEDARKDILKVLALE------PNNKQAEIELAELN 244 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~------p~~~~a~~~l~~~~ 244 (270)
..+|++++|+..|+++++++ |++..++..+..++
T Consensus 218 ~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~~ 257 (258)
T 3uq3_A 218 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHhh
Confidence 99999999999999999999 99999998887653
No 87
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.61 E-value=3.5e-14 Score=112.56 Aligned_cols=109 Identities=15% Similarity=0.133 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH------------
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV------------ 200 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------------ 200 (270)
..+...|..++..|++++|+..|++++..+|.++.+++++|.++..+|++++|+..|++++.+.|.+.
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 117 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK 117 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccC
Confidence 46888999999999999999999999999999999999999999999999999999999999888776
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284 201 ----KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241 (270)
Q Consensus 201 ----~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 241 (270)
.+++.+|.++..+|++++|+..|+++++++|++.......+
T Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a 162 (213)
T 1hh8_A 118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA 162 (213)
T ss_dssp EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred ccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence 99999999999999999999999999999998765444443
No 88
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.60 E-value=1.7e-14 Score=123.86 Aligned_cols=132 Identities=11% Similarity=0.002 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--------------
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN-------------- 197 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-------------- 197 (270)
+..+...|..++..|++++|+..|+++++++|.+..++.++|.++..+|++++|+..|++++.++|
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 178 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC---------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchH
Confidence 445777788888888888888888888888888888888888888888888777777777766554
Q ss_pred ------------------------------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284 198 ------------------------------T--YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245 (270)
Q Consensus 198 ------------------------------~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 245 (270)
. ++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++.
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 258 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA 258 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4 78889999999999999999999999999999999999999999999
Q ss_pred HhCCCCCcch---HhhhcCCC
Q psy6284 246 KLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 246 ~~~~~~~a~~---~~~~~~~~ 263 (270)
.+|++.+++. ..+..+|.
T Consensus 259 ~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred HcCCHHHHHHHHHHHHhcCCC
Confidence 9999888877 44444443
No 89
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=2.3e-14 Score=113.84 Aligned_cols=124 Identities=18% Similarity=0.169 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKE-GKWGEAIEKYNVAIQ--TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 132 a~~~~~~g~~~~~~-g~~~~A~~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
...+...|..++.. |++++|+..|+++++ ..|.+..++.++|.++..+|++++|+..+++++..+|.+..+++.+|.
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 155 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 45677889999999 999999999999999 666778899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 209 ARRSLNHFEDARKDILKVLALEP-NNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++...|++++|+..|+++++++| ++..++..+..++...|+..++..
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 203 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYE 203 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 99999999999999999999999 999999988888888888776655
No 90
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1.5e-14 Score=117.52 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
+..+...|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++..+|.+..+++.+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 55788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLA--LEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~--~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..|++++|+..|+++++ .+|.+..++..++.++...|++.+++.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 162 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE 162 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999 899999999999999999999988876
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.60 E-value=8.4e-15 Score=120.33 Aligned_cols=117 Identities=15% Similarity=0.058 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHH--------ccCHHHHHHHHHHHHhcCCCCH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---AVFFANRALCFLK--------MKNYVSAEADCTASLKLDNTYV 200 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~---~~~~~~~a~~~~~--------~~~~~~A~~~~~~al~~~p~~~ 200 (270)
...++..|..++..|+|++|+..|+++++..|++ +.+++++|.|+.. +|++++|+..|++++..+|++.
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 3468889999999999999999999999998865 6789999999999 9999999999999999999886
Q ss_pred HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhC
Q psy6284 201 KAY-----------------QRRAAARRSLNHFEDARKDILKVLALEPN---NKQAEIELAELNRKLN 248 (270)
Q Consensus 201 ~a~-----------------~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~l~~~~~~~~ 248 (270)
.+. +.+|.++..+|++++|+..|+++++.+|+ ...++..++.++..+|
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 666 88999999999999999999999999998 5679999999999883
No 92
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=99.59 E-value=7.8e-17 Score=124.54 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=65.0
Q ss_pred cccccceEEEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcch-
Q psy6284 10 WNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSW- 88 (270)
Q Consensus 10 ~~~~~~~~~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~- 88 (270)
.+.|++.|+||||+|++|||+|+.||+.|+ +||+|||+||+++.+||.++.++.|++| |......
T Consensus 4 ~~~f~r~W~VIDA~g~~LGRLAS~VAk~Ll------------~Gd~VVVINAekI~iTG~K~~~K~yy~~--~l~~~~~~ 69 (206)
T 3iz5_K 4 GSGVCAKRVVVDARHHMLGRLASIVAKELL------------NGQRVVVVRCEEICMSGGLVRQKMKYLR--FLRKRMNT 69 (206)
T ss_dssp SSSCCSSCCEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHH--HHHHTTCS
T ss_pred ccccceeEEEEeCCCCchHHHHHHHHHHHh------------CCCEEEEEcCcccCcCCchHhhhhheee--ecceeecC
Confidence 467899999999999999999999999999 8999999999999999999999998865 2111110
Q ss_pred -hhhhhhhccCcchhhhhh
Q psy6284 89 -TLAWQLHEIDPTLDKACE 106 (270)
Q Consensus 89 -~~~~~l~~~~p~~~~~~~ 106 (270)
.+..+++.+.|+.++...
T Consensus 70 np~~~~~~~r~P~~Il~~A 88 (206)
T 3iz5_K 70 KPSHGPIHFRAPAKILWRT 88 (206)
T ss_dssp CSSSCSCCCCSHHHHHHHH
T ss_pred CCcccchhhcCHHHHHHHH
Confidence 012455556676666533
No 93
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=3.9e-14 Score=118.92 Aligned_cols=124 Identities=14% Similarity=0.145 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...+...|..++..|++++|+..|.+++...|.++.++.++|.++..+|++++|+..+++++..+|.+..+++.+|.++.
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPN------------NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~------------~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+|++++|+..|+++++++|+ +..++..++.++..+|++.++..
T Consensus 252 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 252 NMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999999 89999999999999999876655
No 94
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.58 E-value=3e-14 Score=119.76 Aligned_cols=123 Identities=12% Similarity=0.085 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---------CCCHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD---------NTYVKAY 203 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~a~ 203 (270)
..+...|..+...|++++|+..|+++++..|.++.++.++|.++..+|++++|+..+++++.+. |.+..++
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHH
Confidence 3455678888888888888888888888888888888888888888888888888888888775 6667788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 204 QRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 204 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+.+|.++..+|++++|+..|+++++++|++..++..++.++..+|++.+++.
T Consensus 240 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 291 (330)
T 3hym_B 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVD 291 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHH
Confidence 8888888888888888888888888888888888888888888888877766
No 95
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.57 E-value=4.5e-14 Score=118.68 Aligned_cols=124 Identities=13% Similarity=-0.058 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEG-KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 132 a~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
...+...|..++..| ++++|+..|.+++..+|.++.++.++|.++..+|++++|+..+++++.+.|.+..+++.+|.++
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 456788999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
...|++++|+..|+++++++|++..++..++.++...|++.+++.
T Consensus 170 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence 999999999999999999999999999999999999999988876
No 96
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.57 E-value=6.8e-14 Score=123.10 Aligned_cols=125 Identities=23% Similarity=0.303 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..+...|..+++.|+|++|+..|+++++.+|.++.+++++|.++..+|++++|+..|++++.++|++..+++.+|.++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 45578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHhCCCCCcch
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNK---QAEIEL------------AELNRKLNIPLSPIK 255 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~---~a~~~l------------~~~~~~~~~~~~a~~ 255 (270)
..+|++++|+..|+++++++|++. .++..+ +.++...|++.+++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~ 164 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA 164 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999998 887766 555888888877766
No 97
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.57 E-value=1e-13 Score=116.29 Aligned_cols=133 Identities=12% Similarity=-0.012 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALC--FLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~--~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
...+...|..+.+.|++++|+..|+++++.+|++.......+.+ +...|++++|+..|++++..+|+++.+++.+|.+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~ 209 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC 209 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 45677889999999999999999999999999986544444432 3345899999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch----HhhhcCCCc
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK----VDFLHNPYH 264 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~----~~~~~~~~~ 264 (270)
+..+|++++|+..|+++++++|+++.++.+++.++..+|+..++.. +-+..+|.+
T Consensus 210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999876432 344455543
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.57 E-value=3.3e-14 Score=132.75 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=114.1
Q ss_pred HHcCCHHHHHHHHHHHH--------hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 143 VKEGKWGEAIEKYNVAI--------QTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 143 ~~~g~~~~A~~~y~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
+..|++++|+..|++++ ..+|++..+++++|.++..+|++++|+..|++++.++|++..+|+.+|.++..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 78999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 215 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
++++|++.|+++++++|++..++..++.++..+|++.+ +. ..+..+|..
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~ 533 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGV 533 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCch
Confidence 99999999999999999999999999999999999998 76 555566644
No 99
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.56 E-value=1.5e-15 Score=117.23 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=51.8
Q ss_pred ccceEEEEecCCCCchhhHHHHHH-HHcCCCCCcccCCCCCCCeEEEecCceeeeecccccccccc-CCC-------CCC
Q psy6284 13 FARIWHIYDAKWQNPIESAKVISK-HLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYF-HHT-------GYP 83 (270)
Q Consensus 13 ~~~~~~~~d~~~~~~~~~~~~v~~-~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~-~~t-------~y~ 83 (270)
..+.|+||||+|++|||+|+.||+ +|+ ||+|||+||+++.+||.++.++.|+ +|+ +++
T Consensus 2 ~~r~w~VIDA~g~~LGRLAS~VAk~lL~-------------G~~VVVINaeki~iTG~k~~~K~yy~~h~~~~~~~n~~~ 68 (203)
T 2zkr_j 2 AEVQVLVLDGRGHLLGRLAAIVAKQVLL-------------GRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNPSR 68 (203)
T ss_dssp -----CEEECTTBBHHHHHHHHHHHHHH-------------TCCEEEECGGGCEEESCHHHHHHHSSSSSCHHHHCCCSS
T ss_pred CCccEEEEeCCCCchHHHHHHHHHHHhC-------------CCeEEEEchHHeecCchHHHHHHHHHHHHhhcccCCCCC
Confidence 467899999999999999999999 887 4799999999999999999999999 887 677
Q ss_pred CCcc
Q psy6284 84 GGVS 87 (270)
Q Consensus 84 ~g~~ 87 (270)
|+..
T Consensus 69 G~~~ 72 (203)
T 2zkr_j 69 GPYD 72 (203)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 7643
No 100
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.55 E-value=9.2e-14 Score=99.65 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 150 ~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
.|+..|.++++.+|+++.+++++|.++..+|++++|+..|++++.++|.+..+++.+|.++..+|++++|+..|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CCHHHHHHHHHHHHHhCC
Q psy6284 230 EP--NNKQAEIELAELNRKLNI 249 (270)
Q Consensus 230 ~p--~~~~a~~~l~~~~~~~~~ 249 (270)
+| .+..+...+...+..+++
T Consensus 83 ~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 83 AQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhcc
Confidence 98 456777777777666543
No 101
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.55 E-value=3.4e-14 Score=119.04 Aligned_cols=134 Identities=13% Similarity=0.042 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCCCC----
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKM-KNYVSAEADCTASLKLDNTY---- 199 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~p~~---- 199 (270)
.+..+.+.|..+...|++++|+.+|++++.+.|.. ..++.++|.+|..+ |++++|+.+|++++.+.|..
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 36678899999999999999999999999987654 46899999999995 99999999999999988754
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 200 --VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQ-------AEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 200 --~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~-------a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
..++..+|.++..+|++++|+..|+++++++|++.. ++..++.++..+|++.+|+. ..+..+|.+
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 567899999999999999999999999999988754 57889999999999888876 444445543
No 102
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=6.2e-15 Score=104.50 Aligned_cols=90 Identities=28% Similarity=0.444 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY------VKAYQRRA 207 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~~g 207 (270)
.+...|..++..|+|++|+..|+++++++|.++.+++++|.|+..+|++++|+.+|++++.++|++ ..+++++|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 85 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE 85 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555555555555555555555555555555 55555555
Q ss_pred HHHHHcCCHHHHHHHH
Q psy6284 208 AARRSLNHFEDARKDI 223 (270)
Q Consensus 208 ~~~~~~g~~~~A~~~~ 223 (270)
.++..+|+++.|+..|
T Consensus 86 ~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 86 LAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHCCCCCSSSS
T ss_pred HHHHHHHhHhhhHhHH
Confidence 5555555554444433
No 103
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.55 E-value=2.2e-13 Score=116.49 Aligned_cols=124 Identities=16% Similarity=0.087 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----------------------------------------------
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH----------------------------------------------- 164 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~----------------------------------------------- 164 (270)
...+...|..+...|++++|+..|.+++...|.
T Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 211 (368)
T 1fch_A 132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 211 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC
Confidence 344556666666666777777777666665443
Q ss_pred ----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 165 ----DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 165 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
++.++.++|.++...|++++|+..|++++.++|.++.+++.+|.++...|++++|+..|+++++++|++..++..+
T Consensus 212 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 291 (368)
T 1fch_A 212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291 (368)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 3455666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCCCCcch
Q psy6284 241 AELNRKLNIPLSPIK 255 (270)
Q Consensus 241 ~~~~~~~~~~~~a~~ 255 (270)
+.++..+|++.+++.
T Consensus 292 ~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 292 GISCINLGAHREAVE 306 (368)
T ss_dssp HHHHHHHTCHHHHHH
T ss_pred HHHHHHCCCHHHHHH
Confidence 666666666666555
No 104
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.54 E-value=1.4e-13 Score=116.66 Aligned_cols=123 Identities=18% Similarity=0.147 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHH------------HHHHHHccCHHHHHHHHHHHHhcCC
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP---HDAVFFANR------------ALCFLKMKNYVSAEADCTASLKLDN 197 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p---~~~~~~~~~------------a~~~~~~~~~~~A~~~~~~al~~~p 197 (270)
..+...|..++..|++++|+..|.++++..| .+..++..+ |.++...|++++|+..+++++..+|
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV 151 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 3455556666666666666666666666666 555555544 4555666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...|++.+++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 209 (359)
T 3ieg_A 152 WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS 209 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666666666666666666666666666666666666666655544
No 105
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=3.3e-14 Score=103.61 Aligned_cols=93 Identities=22% Similarity=0.171 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242 (270)
Q Consensus 163 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 242 (270)
|..+..+.++|.+++..|++++|+..|++++.++|.++.+++.+|.++..+|++++|+.+|+++++++|++..++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCcch
Q psy6284 243 LNRKLNIPLSPIK 255 (270)
Q Consensus 243 ~~~~~~~~~~a~~ 255 (270)
++..+|++.+++.
T Consensus 81 ~~~~~~~~~~A~~ 93 (126)
T 3upv_A 81 AQIAVKEYASALE 93 (126)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHHhCHHHHHH
Confidence 9999999988877
No 106
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.2e-13 Score=123.14 Aligned_cols=104 Identities=29% Similarity=0.426 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
...+..++..|..+++.|+|++|+..|++++..+| ++.+++++|.|+..+|++++|+.+|++++.++|++..+++.+|.
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 45677899999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCC
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~~ 233 (270)
++..+|++++|+..|+++++++|.+
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~ 106 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFN 106 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999855
No 107
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=3.4e-14 Score=116.54 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=110.1
Q ss_pred HHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284 143 VKEGKWGEAIEKYNVAIQTY----PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218 (270)
Q Consensus 143 ~~~g~~~~A~~~y~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~ 218 (270)
...|+|++|+..|.++++.. |.++.+++++|.++..+|++++|+..|++++.++|.+..+++.+|.++...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34578999999999999974 45678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 219 ARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 219 A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
|+..|+++++++|++..++..++.++..+|++.+++. ..+..+|.
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 143 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999988877 44444443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.52 E-value=5.3e-14 Score=128.48 Aligned_cols=119 Identities=14% Similarity=0.074 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
.|++++|+..|+++++.+|.+..+++++|.++..+|++++|+..+++++.++|++..+++.+|.++..+|++++|++.|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 225 KVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 225 ~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
++++++|++..++..++.++..+|++.+|+. ..+..+|.
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988877 44444553
No 109
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.52 E-value=5.3e-14 Score=103.22 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHH
Q psy6284 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK-------QAE 237 (270)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~ 237 (270)
...++.++|.++++.|+|++|+..|++++.++|+++.+|+++|.+|..+|++++|+++|+++++++|++. .++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999999999999774 578
Q ss_pred HHHHHHHHHhCCCCCcch
Q psy6284 238 IELAELNRKLNIPLSPIK 255 (270)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~ 255 (270)
..++.++..+|++.+|+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~ 104 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQ 104 (127)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 889999999999988877
No 110
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.52 E-value=4.5e-13 Score=117.84 Aligned_cols=124 Identities=19% Similarity=0.052 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHH--
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQRR-- 206 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~~-- 206 (270)
+..+...|..++..|++++|+..|.++++.+|.+..++.++|.++..+|++++|+..|++++.++|.+. .++..+
T Consensus 60 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~ 139 (450)
T 2y4t_A 60 YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 456777888888888888888888888888888888888888888888888888888888888888877 665544
Q ss_pred ----------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 207 ----------AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 207 ----------g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|.++...|++++|+..|+++++++|.+..++..++.++...|++.+++.
T Consensus 140 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH
Confidence 6668888888888888888888888888888888888888888888766
No 111
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.51 E-value=8.5e-14 Score=98.18 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=95.5
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHH
Q psy6284 161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN--NKQAEI 238 (270)
Q Consensus 161 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~ 238 (270)
++|++..+++++|.++...|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|+ +..++.
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 80 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWA 80 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHh-CCCCCcch---HhhhcCCC
Q psy6284 239 ELAELNRKL-NIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 239 ~l~~~~~~~-~~~~~a~~---~~~~~~~~ 263 (270)
.++.++..+ |++.+++. ..+...|.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 999999999 99998877 44444443
No 112
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.50 E-value=3.2e-13 Score=95.52 Aligned_cols=91 Identities=12% Similarity=0.054 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q psy6284 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEI 238 (270)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~ 238 (270)
+..+++++|.+++..|++++|+..|++++.++|.++.+++++|.++..+|++++|+..|+++++++|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHhCCCCCcch
Q psy6284 239 ELAELNRKLNIPLSPIK 255 (270)
Q Consensus 239 ~l~~~~~~~~~~~~a~~ 255 (270)
.++.++..+|....++.
T Consensus 83 ~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHhHhhhHh
Confidence 99999999999888776
No 113
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.50 E-value=1.1e-13 Score=105.76 Aligned_cols=102 Identities=15% Similarity=0.041 Sum_probs=93.7
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284 162 YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241 (270)
Q Consensus 162 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 241 (270)
.+.++..++.+|.+++..|++++|+..|++++.++|.+..+++.+|.++..+|++++|+.+|+++++++|++..++..++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcch---HhhhcCCC
Q psy6284 242 ELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 242 ~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
.++..+|++.+++. ..+..+|.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCC
Confidence 99999999988877 44444443
No 114
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.50 E-value=1.1e-13 Score=100.62 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
..++.+|.+++..|++++|+..|++++.++|++..+|+.+|.++..+|++++|+..|+++++++|++..++..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCcch---HhhhcCC
Q psy6284 247 LNIPLSPIK---VDFLHNP 262 (270)
Q Consensus 247 ~~~~~~a~~---~~~~~~~ 262 (270)
+|++.+++. ..+..+|
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 999988877 4444455
No 115
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.49 E-value=7.2e-14 Score=105.64 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh----
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNT-------YVK-----AYQRRAAARRSLNHFEDARKDILKVLAL---- 229 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~~-----a~~~~g~~~~~~g~~~~A~~~~~~al~~---- 229 (270)
...+.++|.+++.+|+|++|+..|++++.++|+ +.. +|+++|.++..+|++++|+.+|.++|++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 456899999999999999999999999999999 554 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHhCCCCCcch
Q psy6284 230 ---EPNNKQAE----IELAELNRKLNIPLSPIK 255 (270)
Q Consensus 230 ---~p~~~~a~----~~l~~~~~~~~~~~~a~~ 255 (270)
+|++..+| +.++.++..+|++.+|+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence 99999999 999999999999999987
No 116
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.49 E-value=1.8e-13 Score=122.90 Aligned_cols=123 Identities=15% Similarity=0.099 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+...|..++..|++++|+..|.++++.+|.++.++.++|.++..+|++++|+..|++++.++|.+..+++.+|.++..
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 356 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYK 356 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|++++|+..|+++++.+|++..++..++.++...|++.+++.
T Consensus 357 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 357 QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 7777777777777777777777777777777777777766655
No 117
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.49 E-value=1.2e-12 Score=116.04 Aligned_cols=132 Identities=17% Similarity=0.063 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQT---------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD------ 196 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~---------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------ 196 (270)
+..+...|..++..|+|++|+.+|++|+++ +|....+|.|+|.+|..+|++++|+.++++++.+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 335677899999999999999999999986 56678899999999999999999999999999763
Q ss_pred --CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh---CCCCCcch---HhhhcCCC
Q psy6284 197 --NTYVKAYQRRAAARRSL--NHFEDARKDILKVLALEPNNKQAEIELAELNRKL---NIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 197 --p~~~~a~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~---~~~~~a~~---~~~~~~~~ 263 (270)
+..+.++..+|.++... +++++|+.+|+++++++|+++.++..++.+...+ ++..+++. ..+..+|.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 45678899998887664 5799999999999999999999999999886554 55566655 44455554
No 118
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.49 E-value=1.3e-12 Score=94.64 Aligned_cols=101 Identities=26% Similarity=0.323 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+...|..++..|++++|+..|.+++...|.+..++.++|.++...|++++|+..+++++...|.+..+++.+|.++..
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 115 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 115 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC
Q psy6284 213 LNHFEDARKDILKVLALEPNN 233 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~ 233 (270)
.|++++|+..|.+++.++|++
T Consensus 116 ~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 116 QGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHSTTC
T ss_pred HccHHHHHHHHHHHHccCCCC
Confidence 999999999999999999874
No 119
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.49 E-value=4.6e-13 Score=120.29 Aligned_cols=124 Identities=19% Similarity=0.121 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..+...|..++..|++++|+..|.+++..+|. ..++..+|.++...|++++|+..+++++..+|.++.+++.+|.++
T Consensus 242 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 242 AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320 (537)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 3556888999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
...|++++|+..|+++++++|++..++..++.++...|++.+++.
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 365 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA 365 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999988877
No 120
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.48 E-value=2.4e-13 Score=99.97 Aligned_cols=96 Identities=16% Similarity=0.117 Sum_probs=90.8
Q ss_pred hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284 160 QTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE 239 (270)
Q Consensus 160 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 239 (270)
..+|.++..++.+|.+++..|++++|+..|++++.++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcch
Q psy6284 240 LAELNRKLNIPLSPIK 255 (270)
Q Consensus 240 l~~~~~~~~~~~~a~~ 255 (270)
++.++..+|++.+++.
T Consensus 83 l~~~~~~~~~~~~A~~ 98 (137)
T 3q49_B 83 LGQCQLEMESYDEAIA 98 (137)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhHHHHHH
Confidence 9999999999988876
No 121
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.48 E-value=7.6e-15 Score=111.36 Aligned_cols=78 Identities=15% Similarity=0.117 Sum_probs=63.5
Q ss_pred EEEecCCCCchhhHHHHHHHHcCCCCCcccCCCCCCCeEEEecCceeeeeccccccccccCCCCCCCCcchhhhhhhhcc
Q psy6284 18 HIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEI 97 (270)
Q Consensus 18 ~~~d~~~~~~~~~~~~v~~~l~g~~k~~~~p~~d~gd~v~v~n~~~~~~~g~~~~~k~y~~~t~y~~g~~~~~~~~l~~~ 97 (270)
+|||++|++|||+++.||+.|+ +||+|||+|++++.+||+++++|.|++|.............+++.+
T Consensus 1 ~VIDA~g~~LGRLAs~VAk~L~------------~GD~VVVINaeki~iTG~K~~~K~yy~h~l~~~~~~~~~~~~~~~r 68 (178)
T 3jyw_M 1 VVIDGKGHLVGRLASVVAKQLL------------NGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFR 68 (178)
T ss_dssp CCCCCCSSCSHHHHHHHHHHHT------------TTCCCCEECSTTSCCCCCSSHHHHSCSSSSSSTTSCCCSSSCCCCS
T ss_pred CEEcCCCCchHHHHHHHHHHHh------------CCCEEEEEeCeeeEEcCchHhhEhheeccCcccccCCccccccccC
Confidence 5899999999999999999999 9999999999999999999999999988322222222234567778
Q ss_pred Ccchhhhhhh
Q psy6284 98 DPTLDKACEE 107 (270)
Q Consensus 98 ~p~~~~~~~~ 107 (270)
.|+.++....
T Consensus 69 ~P~~Il~~AV 78 (178)
T 3jyw_M 69 APSRIFYKAL 78 (178)
T ss_dssp STTTHHHHHT
T ss_pred CHHHHHHHHH
Confidence 8888876554
No 122
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.48 E-value=1.4e-13 Score=112.90 Aligned_cols=125 Identities=20% Similarity=0.162 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--------PHDAVFFANRALCFLKMKNYVSAEADCTASLKL------- 195 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------- 195 (270)
.+..+...|..++..|++++|+..|.+++++. |....++.++|.++..+|++++|+..|++++.+
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 45678889999999999999999999999873 556789999999999999999999999999988
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 196 -DNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL--------EPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 196 -~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+|....+++.+|.++..+|++++|+..|++++++ +|....++..++.++...|++.+++.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777889999999999999999999999999999 78888999999999999999988876
No 123
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.47 E-value=2e-13 Score=114.37 Aligned_cols=122 Identities=9% Similarity=-0.018 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH------DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY------VK 201 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 201 (270)
.+...|+.+...|+|++|+..|.+++++.+. ...++.++|.+|..+|++++|+.+|++++.+.|.. ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4555688889999999999999999998532 25799999999999999999999999999998743 56
Q ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCCcch
Q psy6284 202 AYQRRAAARRSL-NHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 202 a~~~~g~~~~~~-g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++.++|.+|... |++++|+.+|++++++.|++ ..++..++.++..+|++.+|+.
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 179 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 899999999996 99999999999999998865 5678999999999999999887
No 124
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.47 E-value=1.2e-14 Score=124.54 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=110.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q psy6284 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---------------VKAYQRRAAA 209 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~ 209 (270)
.+++++|+..|.++++.+|.+..++.++|.+++.+|++++|+..|++++.++|.+ ..+++++|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888999999999999999999999999999999999999999999998 6999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
+..+|++++|+.+|+++++++|++..++..++.++..+|++.+|+. ..+..+|..
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999877 555556643
No 125
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.47 E-value=8.3e-13 Score=120.38 Aligned_cols=124 Identities=16% Similarity=-0.011 Sum_probs=118.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
...+...|..+.+.|++++|+..|+++++..|.+..+|..+|.++...|++++|+..|++++...|.+..+++.+|.++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..|++++|++.|+++++++|.++.++..++.++...|++.+++.
T Consensus 453 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 496 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496 (597)
T ss_dssp HHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999988877
No 126
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.47 E-value=1e-12 Score=119.79 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCC-HHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL------DNTY-VKAYQRR 206 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~-~~a~~~~ 206 (270)
.+...|..+.+.|++++|+..|+++++..|.++.++.++|.++...|++++|+..|++++.+ +|++ ..+++.+
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 34555666666666666666666666666666666777777777777777777777776666 4443 5666777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|.++...|++++|++.|+++++++|++..++..++.++...|+..++..
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 7777777777777777777777777777777777777777776666655
No 127
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.47 E-value=8.2e-13 Score=89.96 Aligned_cols=84 Identities=24% Similarity=0.292 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
+..+++++|.++...+++++|+..|++++.++|.+..+++.+|.++...|++++|+..|+++++++|++..++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35566677777777777777777777777777777777777777777777777777777777777777777777777666
Q ss_pred HHhC
Q psy6284 245 RKLN 248 (270)
Q Consensus 245 ~~~~ 248 (270)
..+|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 5543
No 128
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.47 E-value=2.9e-13 Score=113.57 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=111.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR 220 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~ 220 (270)
.+...|++++|+..|.++++..|.++.++..+|.++..+|++++|+..+++++..+|.+..+++.+|.++...|++++|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 221 KDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 221 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..|+++++++|++..++..++.++..+|++.+++.
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999999999999999999999988876
No 129
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.45 E-value=8.1e-13 Score=92.56 Aligned_cols=91 Identities=20% Similarity=0.112 Sum_probs=80.6
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHH
Q psy6284 161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP--NNKQAEI 238 (270)
Q Consensus 161 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~ 238 (270)
.+|+++.+++++|.+++.+|++++|+..|++++.++|+++.+|+.+|.++..+|++++|++.|++++++.| .+..+..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999987 4677777
Q ss_pred HHHHHHHHhCCCC
Q psy6284 239 ELAELNRKLNIPL 251 (270)
Q Consensus 239 ~l~~~~~~~~~~~ 251 (270)
.+..++...+...
T Consensus 82 ~l~~~l~~~~~~~ 94 (100)
T 3ma5_A 82 ELQDAKLKAEGLE 94 (100)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHccccc
Confidence 8888777665543
No 130
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=1.9e-12 Score=109.08 Aligned_cols=124 Identities=10% Similarity=-0.075 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV-FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
...+...|..+...|++++|+..|++++++.|.++. +|.++|.++..+|++++|+..|++++..+|.+..+|...+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 346778899999999999999999999999999886 8999999999999999999999999999998888887666664
Q ss_pred HH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 211 RS-LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 211 ~~-~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.. .|++++|+..|+++++++|++..++..++.++..+|+..++..
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~ 224 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 43 7999999999999999999999999999999999898877766
No 131
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.43 E-value=2.9e-13 Score=94.14 Aligned_cols=91 Identities=13% Similarity=0.116 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV-FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~-~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g 214 (270)
++.|..++..|+|++|+..|+++++.+|.++. +++++|.++..+|++++|+..|++++.++|++..+++. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45688888888888898888888888888888 88888888888888888888888888888888887754 5
Q ss_pred CHHHHHHHHHHHHhhCCCCH
Q psy6284 215 HFEDARKDILKVLALEPNNK 234 (270)
Q Consensus 215 ~~~~A~~~~~~al~~~p~~~ 234 (270)
.+.+|+..|++++..+|++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHhccCcccc
Confidence 67778888888887777653
No 132
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.43 E-value=6.5e-13 Score=118.46 Aligned_cols=123 Identities=16% Similarity=0.167 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH------HHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK------AYQRR 206 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~------a~~~~ 206 (270)
..+...|..++..|++++|+..|+++++..|.++.+++++|.++..+|++++|+..+++++.++|.+.. +++.+
T Consensus 339 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 339 FPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 345666777777777777777777777777777778888888888888888888888888877776644 77888
Q ss_pred HHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 207 AAARRS---LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 207 g~~~~~---~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|.++.. .|++++|+..|++++.++|++..++..++.++...|++.+++.
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888 7888888888888888888888888888888888887777665
No 133
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.42 E-value=4.7e-12 Score=86.09 Aligned_cols=84 Identities=29% Similarity=0.325 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
.+..+...|..++..|++++|+..|+++++.+|.++.+++++|.++..++++++|+..+++++.++|.+..+++.+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 34567888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcC
Q psy6284 211 RSLN 214 (270)
Q Consensus 211 ~~~g 214 (270)
..+|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 8765
No 134
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.42 E-value=5.9e-13 Score=109.06 Aligned_cols=126 Identities=20% Similarity=0.132 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT--------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKL------ 195 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 195 (270)
..+..+...|..++..|++++|+.+|.+++.+ .|....++.++|.++..+|++++|+..+++++.+
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 44667889999999999999999999999998 4667889999999999999999999999999998
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------------------------
Q psy6284 196 --DNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL-------------------------------------------- 229 (270)
Q Consensus 196 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------------------------------- 229 (270)
.|....+++.+|.++..+|++++|+..|++++++
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 7778889999999999999999999999999986
Q ss_pred -----CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 230 -----EPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 230 -----~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|....++..++.++...|++.+|+.
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 273 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQGKLEAAHT 273 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 25556788889999999998877765
No 135
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.41 E-value=3.7e-12 Score=106.70 Aligned_cols=127 Identities=8% Similarity=-0.091 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH--HH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA--AA 209 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g--~~ 209 (270)
...+...|..+...|++++|+..|.+ |.+..++.++|.++..+|++++|+..+++++..+|++....+..+ ..
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l 175 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL 175 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH
Confidence 44678889999999999999999987 899999999999999999999999999999999999875544444 33
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
+...|++++|+..|+++++.+|+++.++..++.++..+|++.+++. ..+..+|.
T Consensus 176 ~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~ 232 (291)
T 3mkr_A 176 AAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG 232 (291)
T ss_dssp HHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3355899999999999999999999999999999999999998877 44555554
No 136
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.41 E-value=4.7e-14 Score=125.75 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=108.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---------------HHHHHHHHHH
Q psy6284 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---------------VKAYQRRAAA 209 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~a~~~~g~~ 209 (270)
.++|++|+..|.+++...|....++.++|.+++.+++|++|+..|++++.++|.+ ..+|+++|.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888899999999999999999999999999999999999999998 7999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
+..+|++++|+.+|+++++++|++..++..++.++..+|++.+|+. ..+..+|..
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~ 384 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN 384 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999887 555555543
No 137
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=8.9e-12 Score=102.64 Aligned_cols=118 Identities=13% Similarity=0.008 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHH
Q psy6284 132 AVYSKEQGNKLVK----EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKAY 203 (270)
Q Consensus 132 a~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~ 203 (270)
...+...|..+.. .+++++|+..|+++++.. ++.+++++|.++.. .+++++|+..|++++..+ ++.++
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 113 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGC 113 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHH
Confidence 3456666777777 777777777777776653 66677777777777 777777777777777663 66677
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284 204 QRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK----LNIPLSPIK 255 (270)
Q Consensus 204 ~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~----~~~~~~a~~ 255 (270)
+.+|.++.. .+++++|+..|+++++.+ +..++..++.++.. .+++.+++.
T Consensus 114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~ 171 (273)
T 1ouv_A 114 ASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALA 171 (273)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 777777776 777777777777777654 56666777777666 555555544
No 138
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.40 E-value=8.9e-13 Score=100.33 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKL------------------DNTYVKAYQRRAAARRSLNHFEDARKDILKVL 227 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 227 (270)
+..+.++|..++..|+|++|+..|++++.+ +|.+..+++++|.++..+|++++|+.+|++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567899999999999999999999999999 77888999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 228 ALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 228 ~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
+++|++..++..++.++..+|++.+|+. ..+..+|..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999999887 556666654
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=5.7e-12 Score=115.03 Aligned_cols=121 Identities=10% Similarity=0.016 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCC
Q psy6284 131 SAVYSKEQGNKLVKEGK----------WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK--NYVSAEADCTASLKLDNT 198 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~----------~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~ 198 (270)
....|..+|..+...|+ +++|+..++++++.+|.+..+|++++.++..++ ++++++++|+++++++|.
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc
Confidence 34567777777777766 778888888888888888888888888887777 567888888888888888
Q ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284 199 YVKAYQRRAAARRSLN-HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPL 251 (270)
Q Consensus 199 ~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 251 (270)
+..||..++.++..+| .++++++++.++++.+|.|..||..++.++..++...
T Consensus 142 N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 142 NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 8888888888877777 7777888888888888888888888887777765543
No 140
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.39 E-value=1.3e-11 Score=103.91 Aligned_cols=124 Identities=8% Similarity=0.008 Sum_probs=115.8
Q ss_pred HHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHhcCCCCHHH
Q psy6284 132 AVYSKEQGNKL----VKE---GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV--SAEADCTASLKLDNTYVKA 202 (270)
Q Consensus 132 a~~~~~~g~~~----~~~---g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~--~A~~~~~~al~~~p~~~~a 202 (270)
...|..++..+ ... +++++++..+.++++.+|.+..+|++++.+...++.++ ++++.+++++..+|.|..|
T Consensus 103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sA 182 (306)
T 3dra_A 103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSA 182 (306)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHH
Confidence 45677778887 666 89999999999999999999999999999999999998 9999999999999999999
Q ss_pred HHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 203 YQRRAAARRSLNH------FEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 203 ~~~~g~~~~~~g~------~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|..++.++..++. ++++++.+.+++.++|+|..+|..++.++..+|...+++.
T Consensus 183 W~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 183 WSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLE 241 (306)
T ss_dssp HHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGH
T ss_pred HHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHH
Confidence 9999999999998 9999999999999999999999999999999998777665
No 141
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.38 E-value=1.5e-12 Score=112.74 Aligned_cols=126 Identities=15% Similarity=0.103 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD-------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY--- 199 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--- 199 (270)
..+..+...|..++..|++++|+.+|.+++++.+.. ..++.++|.++..+|++++|+..+++++.+.+..
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 220 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQP 220 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh
Confidence 456778899999999999999999999999985443 4589999999999999999999999999885533
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 200 ---VKAYQRRAAARRSLNHFEDARKDILKVLA-----LE-PNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 200 ---~~a~~~~g~~~~~~g~~~~A~~~~~~al~-----~~-p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+++++|.++..+|++++|+..|+++++ .+ |....++..++.++..+|++.+|+.
T Consensus 221 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (383)
T 3ulq_A 221 QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHE 285 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 35899999999999999999999999999 56 8889999999999999999888766
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.38 E-value=2.6e-12 Score=93.36 Aligned_cols=94 Identities=22% Similarity=0.217 Sum_probs=90.2
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284 162 YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241 (270)
Q Consensus 162 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 241 (270)
.|.+..+++++|.++...+++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++++|++..++..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCcch
Q psy6284 242 ELNRKLNIPLSPIK 255 (270)
Q Consensus 242 ~~~~~~~~~~~a~~ 255 (270)
.++..+|++.+++.
T Consensus 92 ~~~~~~~~~~~A~~ 105 (133)
T 2lni_A 92 AALEAMKDYTKAMD 105 (133)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHHHhhHHHHHH
Confidence 99999999988877
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.37 E-value=1.4e-11 Score=102.92 Aligned_cols=121 Identities=12% Similarity=-0.018 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCCCH---
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASL---KLDNTYV--- 200 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~p~~~--- 200 (270)
..+...|..+...|++++|+.+|.++++..+.. ..+++++|.+|..+|++++|+..|++++ ...|++.
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 345668889999999999999999999876543 5689999999999999999999999999 4456543
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCCc
Q psy6284 201 -KAYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 201 -~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~~~~a 253 (270)
.+++++|.+|..+|++++|+..|++++++.++ -..++..++.++..+|++.+|
T Consensus 196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 69999999999999999999999999998653 278899999999999999888
No 144
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.37 E-value=2e-12 Score=96.78 Aligned_cols=126 Identities=15% Similarity=0.128 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---- 199 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---- 199 (270)
..+..+...|..++..|++++|+.+|.+++++.+.. ..++.++|.++..+|++++|+..+++++.+.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 345678889999999999999999999999986543 2589999999999999999999999999876543
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 200 --VKAYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 200 --~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+++.+|.++..+|++++|+..+++++++.+. ...++..++.++..+|++.+++.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence 678999999999999999999999999987432 25688899999999999888766
No 145
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.37 E-value=9.1e-12 Score=104.88 Aligned_cols=118 Identities=11% Similarity=-0.093 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHhcCCCCHHH
Q psy6284 132 AVYSKEQGNKLVKEG--KWGEAIEKYNVAIQTYPHDAVFFANRALCF----LKM---KNYVSAEADCTASLKLDNTYVKA 202 (270)
Q Consensus 132 a~~~~~~g~~~~~~g--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~----~~~---~~~~~A~~~~~~al~~~p~~~~a 202 (270)
...|..+|..+...| ++++++..+.++|..+|.+..+|+.++.++ ..+ +++++++..|++++..+|.+..+
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~a 146 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHV 146 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHH
Confidence 456888899999888 999999999999999999999999999999 777 78999999999999999999999
Q ss_pred HHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 203 YQRRAAARRSLNHFE--DARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 203 ~~~~g~~~~~~g~~~--~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
|+.++.++..+|.++ ++++.+.++++.||.|-.||...+.+...++.
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~ 195 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH 195 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 999999999999988 99999999999999999999999999988775
No 146
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.36 E-value=4.2e-13 Score=105.62 Aligned_cols=125 Identities=15% Similarity=0.041 Sum_probs=103.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----------------HH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYV----------------KA 202 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~a 202 (270)
+...-..|+|++|...+.......+.....+.++|.+++..|+|++|+..|++++.+.|.++ .+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 44445567788888887777766677788999999999999999999999999999999887 89
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 203 YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 203 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
++.+|.++..+|++++|+.+|+++++++|++..++..++.++..+|++.+|+. ..+..+|.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999988877 44445553
No 147
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=7.8e-12 Score=105.28 Aligned_cols=124 Identities=14% Similarity=0.061 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy6284 132 AVYSKEQGNKLV-------KEGKW-------GEAIEKYNVAIQ-TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196 (270)
Q Consensus 132 a~~~~~~g~~~~-------~~g~~-------~~A~~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 196 (270)
+..|...|..+. ..|++ ++|+..|++|+. ++|++..+|.++|.++..+|++++|...|++++.++
T Consensus 50 ~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 129 (308)
T 2ond_A 50 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 129 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc
Confidence 456777777765 45885 999999999999 799999999999999999999999999999999999
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hCCCCCcch
Q psy6284 197 NTYVK-AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK-LNIPLSPIK 255 (270)
Q Consensus 197 p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~-~~~~~~a~~ 255 (270)
|.++. +|..+|.++...|++++|+..|+++++.+|.+..++...+.+... .|+..++..
T Consensus 130 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 130 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887 999999999999999999999999999999998888766655433 577766655
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.35 E-value=3.3e-12 Score=106.78 Aligned_cols=122 Identities=13% Similarity=0.003 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------CCCCH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKL-------DNTYV 200 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~~ 200 (270)
.+...|..+...+++++|+.+|++++.+.+.. ..++.++|.+|..+|++++|+..|++++.. .+...
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 45568999999999999999999999975443 347999999999999999999999999942 23345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCC-CCcch
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIP-LSPIK 255 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~-~~a~~ 255 (270)
.+++++|.+|..+|++++|+..+++++++.+.. ..++..++.++..+|+. .+|+.
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 689999999999999999999999999987655 78999999999999965 66655
No 149
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=2.3e-12 Score=107.24 Aligned_cols=126 Identities=19% Similarity=0.173 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT--------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD----- 196 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----- 196 (270)
..+..+...|..++..|++++|+..|.+++.+ .|....++.++|.++..+|++++|+..+++++.+.
T Consensus 67 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 146 (311)
T 3nf1_A 67 DVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 146 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC
Confidence 34567888999999999999999999999987 35567899999999999999999999999999874
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 197 ---NTYVKAYQRRAAARRSLNHFEDARKDILKVLAL--------EPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 197 ---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|....+++.+|.++...|++++|+..|++++++ +|....++..++.++..+|++.+++.
T Consensus 147 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 567789999999999999999999999999999 78888999999999999999988876
No 150
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=2.5e-12 Score=111.81 Aligned_cols=120 Identities=15% Similarity=0.189 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCC
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA----VFFANRALCFLKMKNYVSAEADCTASLKL------DNTY 199 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~ 199 (270)
..+..+...|..++..|+|++|+..|+++++..|.+. .+++++|.++..+|++++|+..+++++.+ +|..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3456678899999999999999999999999999987 58999999999999999999999999988 5778
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhCC
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLAL------EPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~l~~~~~~~~~ 249 (270)
..+++.+|.++..+|++++|+..|++++++ .|....++..++.++..+|+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 899999999999999999999999999999 67778899999999999999
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.35 E-value=1e-11 Score=87.98 Aligned_cols=98 Identities=19% Similarity=0.130 Sum_probs=90.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 165 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
.+..++.+|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCcch---HhhhcCC
Q psy6284 245 RKLNIPLSPIK---VDFLHNP 262 (270)
Q Consensus 245 ~~~~~~~~a~~---~~~~~~~ 262 (270)
..+|++.++.. ..+..+|
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 99999988877 4444444
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.35 E-value=2e-11 Score=92.23 Aligned_cols=98 Identities=15% Similarity=0.107 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA-- 209 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~-- 209 (270)
...+...|..++..|+|++|+..|.+++..+|.++.+++++|.++..+|++++|+..+++++.++|.+..++..++.+
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999999999999988555544
Q ss_pred HHHcCCHHHHHHHHHHHHhh
Q psy6284 210 RRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~ 229 (270)
+...|++++|+..+.++..+
T Consensus 127 ~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 127 IVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccchHHH
Confidence 88899999999999877543
No 153
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.35 E-value=1.9e-11 Score=111.55 Aligned_cols=84 Identities=8% Similarity=0.023 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEG--KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 132 a~~~~~~g~~~~~~g--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
...|..++..+.+.+ +|++|+..+.++++.+|.+..+|.+++.+...++ .++++++++.+++..+|.+..||+.+|.
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ 186 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHH
Confidence 345556666666666 5566666666666666666666666666666666 6666666666666666666666666666
Q ss_pred HHHHcCC
Q psy6284 209 ARRSLNH 215 (270)
Q Consensus 209 ~~~~~g~ 215 (270)
++..+++
T Consensus 187 ll~~l~~ 193 (567)
T 1dce_A 187 LLPQLHP 193 (567)
T ss_dssp HHHHHSC
T ss_pred HHHhhcc
Confidence 6655443
No 154
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.34 E-value=3.4e-12 Score=107.58 Aligned_cols=124 Identities=11% Similarity=0.024 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-----
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY----- 199 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----- 199 (270)
.+..+.+.|..+...|+|++|+.+|++++++.+.. ..++.++|.+|.. |++++|+..|++++.+.|..
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~ 153 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQ 153 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhH
Confidence 34566777888888888888888888887774321 3567788888877 88888888888888776533
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhCCCCCcch
Q psy6284 200 -VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK------QAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 200 -~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..++.++|.++..+|++++|+..|++++++.|++. .++..++.++..+|++.+++.
T Consensus 154 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 154 AAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 46777788888888888888888888887765442 356666777777777777766
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.1e-11 Score=91.94 Aligned_cols=103 Identities=18% Similarity=0.131 Sum_probs=94.9
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy6284 161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE 237 (270)
Q Consensus 161 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 237 (270)
..|.+...++.+|.+++..|++++|+..|++++.++|++ ..+++.+|.++..+|++++|+..|+++++++|++..++
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 102 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL 102 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence 457788999999999999999999999999999999988 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 238 IELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 238 ~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
..++.++..+|++.+++. ..+..+|.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 999999999999988877 44444553
No 156
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=2.7e-12 Score=106.80 Aligned_cols=126 Identities=21% Similarity=0.149 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--------PHDAVFFANRALCFLKMKNYVSAEADCTASLKL------ 195 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 195 (270)
..+..+...|..++..|++++|+..|.+++++. |....++.++|.++..+|++++|+..+++++.+
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 345678889999999999999999999999884 556779999999999999999999999999998
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------------------------------------------
Q psy6284 196 --DNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL-------------------------------------------- 229 (270)
Q Consensus 196 --~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------------------------------- 229 (270)
.|....+++.+|.++..+|++++|+..|++++++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 7777889999999999999999999999999984
Q ss_pred -----CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 230 -----EPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 230 -----~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+|.+..++..++.++..+|++.+|+.
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 299 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAET 299 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence 46778899999999999999988876
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.34 E-value=3.4e-11 Score=102.15 Aligned_cols=118 Identities=9% Similarity=0.020 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHhcCCCC
Q psy6284 132 AVYSKEQGNKLVKEGK----------WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN--YVSAEADCTASLKLDNTY 199 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~----------~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~--~~~A~~~~~~al~~~p~~ 199 (270)
...|..++..+...+. +.+++..+..++..+|.+..+|+.++.++..+++ +++++.+|++++..+|.|
T Consensus 64 ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprN 143 (331)
T 3dss_A 64 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN 143 (331)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCC
Confidence 3345555555544443 5566666666666666666666666666666663 566666666666666666
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 200 VKAYQRRAAARRSLNH-FEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
..||..++.++...|. ++++++++.++++.+|.|..||..++.++..++.
T Consensus 144 y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 144 FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhh
Confidence 6666666666666665 4666666666666666666666666666655543
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.34 E-value=6.2e-12 Score=91.31 Aligned_cols=89 Identities=16% Similarity=0.027 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYV---KAYQRRAAARRSLNHFEDARKDILKVLALEPNN---KQAEIEL 240 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~l 240 (270)
.+++++|.+++..|++++|+..|++++..+|++. .+++.+|.++...|++++|+..|+++++.+|++ +.++..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3578999999999999999999999999999988 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHhCCCCCcch
Q psy6284 241 AELNRKLNIPLSPIK 255 (270)
Q Consensus 241 ~~~~~~~~~~~~a~~ 255 (270)
+.++..+|++.+++.
T Consensus 83 a~~~~~~g~~~~A~~ 97 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQ 97 (129)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHH
Confidence 999999999988877
No 159
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.32 E-value=1.2e-10 Score=95.82 Aligned_cols=119 Identities=14% Similarity=0.053 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHH
Q psy6284 131 SAVYSKEQGNKLVK----EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKA 202 (270)
Q Consensus 131 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a 202 (270)
....+...|..+.. .+++++|+..|+++++.. ++.+++++|.++.. .+++++|+.++++++..+ ++.+
T Consensus 109 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 184 (273)
T 1ouv_A 109 YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPG 184 (273)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHH
Confidence 34567788888888 899999999999998865 67888999999988 899999999999998874 6788
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284 203 YQRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK----LNIPLSPIK 255 (270)
Q Consensus 203 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~----~~~~~~a~~ 255 (270)
++.+|.++.. .+++++|+..|+++++.+| ..++..++.++.. .+++.+|+.
T Consensus 185 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 185 CFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIE 243 (273)
T ss_dssp HHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHH
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 9999999999 9999999999999998866 8888999999888 888888766
No 160
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.32 E-value=2.6e-11 Score=86.67 Aligned_cols=95 Identities=23% Similarity=0.221 Sum_probs=87.8
Q ss_pred hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284 161 TYPHD-AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE 239 (270)
Q Consensus 161 ~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 239 (270)
.+|.. ..+++.+|.++...+++++|+..+++++..+|.+..+++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35555 77899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCcch
Q psy6284 240 LAELNRKLNIPLSPIK 255 (270)
Q Consensus 240 l~~~~~~~~~~~~a~~ 255 (270)
++.++...|++.+++.
T Consensus 83 la~~~~~~~~~~~A~~ 98 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIE 98 (125)
T ss_dssp HHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCHHHHHH
Confidence 9999999999988876
No 161
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.31 E-value=4.5e-12 Score=109.75 Aligned_cols=122 Identities=14% Similarity=0.126 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-------CH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQT---YPH---DAVFFANRALCFLKMKNYVSAEADCTASLKLDNT-------YV 200 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~---~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-------~~ 200 (270)
.++..|..++..|+|++|+..|++++.+ .++ ...+++++|.++..+|++++|+..+.+++.+.+. ..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3445999999999999999999999987 233 4579999999999999999999999999988443 35
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHhCCCCCcch
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNK------QAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+++.+|.++..+|++++|+..|++++++.|... .++..++.++..+|++.+|+.
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP 245 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 6899999999999999999999999999866443 589999999999999988877
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.31 E-value=7.1e-12 Score=104.42 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242 (270)
Q Consensus 163 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 242 (270)
|.+...++++|.+++..|++++|+..|++++.++|++..+++++|.++..+|++++|+.+|+++++++|++..++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCcch
Q psy6284 243 LNRKLNIPLSPIK 255 (270)
Q Consensus 243 ~~~~~~~~~~a~~ 255 (270)
++..+|++.+|+.
T Consensus 81 ~~~~~g~~~~A~~ 93 (281)
T 2c2l_A 81 CQLEMESYDEAIA 93 (281)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHH
Confidence 9999999988877
No 163
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.31 E-value=9e-12 Score=89.90 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=93.3
Q ss_pred hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 161 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
.+|.+..+++.+|.++...+++++|+..+++++..+|.+..+++.+|.++...|++++|+..|++++.++|++..++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCcch---HhhhcCC
Q psy6284 241 AELNRKLNIPLSPIK---VDFLHNP 262 (270)
Q Consensus 241 ~~~~~~~~~~~~a~~---~~~~~~~ 262 (270)
+.++..+|++.+++. ..+..+|
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 999999999988877 3444444
No 164
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.31 E-value=1.1e-10 Score=97.55 Aligned_cols=126 Identities=13% Similarity=-0.029 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC----
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA------VFFANRALCFLKMKNYVSAEADCTASLKLDNTY---- 199 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---- 199 (270)
.....+...+..++..|+|++|+..|.++++..+... ..++.+|.++...|++++|+..+++++.+.+..
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3445677889999999999999999999999887754 357789999999999999999999999876543
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHhCCCCCcch
Q psy6284 200 --VKAYQRRAAARRSLNHFEDARKDILKVL---ALEPNNK----QAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 200 --~~a~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~~~----~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+++.+|.+|..+|++++|+..|++++ +..|++. .++.+++.++..+|++.+|+.
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 5699999999999999999999999999 5567654 689999999999999998877
No 165
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.29 E-value=7.1e-12 Score=104.86 Aligned_cols=118 Identities=16% Similarity=0.212 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKL------DNTYVK 201 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~ 201 (270)
+..+...|..++..|++++|+..|+++++..|.+ ..++..+|.++...|++++|+..+++++.+ .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 4467788999999999999999999999999998 468999999999999999999999999987 455678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCC
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNI 249 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~ 249 (270)
+++.+|.++..+|++++|+..|++++++.|.. ..++..++.++..+|+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999987654 3488999999999988
No 166
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=2e-11 Score=108.04 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284 133 VYSKEQGNKLVK--EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM---KNYVSAEADCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 133 ~~~~~~g~~~~~--~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~al~~~p~~~~a~~~~g 207 (270)
..+.+.|..+.. .++|++|+.+|+++++++|+++.++.++|.++..+ +++++|+..+++++.++|.+..++..+|
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 345556665544 45789999999999999999998888888876554 5567788888888888888888777777
Q ss_pred HHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 208 AARRSL----NHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 208 ~~~~~~----g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.++..+ |++++|++.|++++.++|++..++..++.++...|++.+++.
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 268 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIE 268 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHH
Confidence 666543 466777888888888888888888888888887777777665
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.28 E-value=7e-12 Score=98.09 Aligned_cols=124 Identities=13% Similarity=0.035 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CC----C
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQT------YPHDAVFFANRALCFLKMKNYVSAEADCTASLKL---DN----T 198 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p----~ 198 (270)
+..+...|..++..|++++|+.+|.+++.+ .|....++.++|.++..+|++++|+..+++++.+ .+ .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 456788899999999999999999999984 3445678999999999999999999999999988 33 3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHHhCCCCCcch
Q psy6284 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEP--NNK----QAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 199 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~----~a~~~l~~~~~~~~~~~~a~~ 255 (270)
...+++.+|.++..+|++++|+..+++++.+.+ .+. .++..++.++...|++.++..
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 168 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 356799999999999999999999999997643 222 346889999999999887765
No 168
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=1.4e-11 Score=106.53 Aligned_cols=127 Identities=13% Similarity=-0.011 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-------DAVFFANRALCFLKMKNYVSAEADCTASLKLDN---- 197 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---- 197 (270)
...+..+...|..++..|++.+|+.+|.+++++.+. ...++.++|.++..+|++++|+..+++++.+.+
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 217 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence 345667888999999999999999999999987543 245788999999999999999999999998643
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 198 --TYVKAYQRRAAARRSLNHFEDARKDILKVLA-----LEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 198 --~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~-----~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
....+++++|.++..+|++++|+..|++++. .+|....++..++.++..+|++.+|+.
T Consensus 218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2346888999999999999999999999999 788888999999999999999888766
No 169
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.28 E-value=5.4e-11 Score=100.95 Aligned_cols=104 Identities=11% Similarity=0.068 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEG--KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN-YVSAEADCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g--~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~~p~~~~a~~~~g 207 (270)
....|..++..+...+ .+++++.++.++++.+|.|..+|.+++.+...++. ++++++++.+++..+|.|..||..++
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~ 186 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS 186 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 4567888999999988 59999999999999999999999999999999999 69999999999999999999999999
Q ss_pred HHHHHc--------------CCHHHHHHHHHHHHhhCCCCH
Q psy6284 208 AARRSL--------------NHFEDARKDILKVLALEPNNK 234 (270)
Q Consensus 208 ~~~~~~--------------g~~~~A~~~~~~al~~~p~~~ 234 (270)
.++..+ +.++++++++.+++.++|+|.
T Consensus 187 ~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~ 227 (331)
T 3dss_A 187 CLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 227 (331)
T ss_dssp HHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 999887 568999999999999999986
No 170
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.27 E-value=1.1e-11 Score=106.99 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV------FFANRALCFLKMKNYVSAEADCTASLKLDNTY------ 199 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 199 (270)
+..+...|..++..|++++|+..|.+++++.|.... ++.++|.++..+|++++|+..+++++.+.|..
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 456788899999999999999999999988665543 89999999999999999999999999887765
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCCcch
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+++.+|.++...|++++|+..|++++++.+.. ..++..++.++..+|++.+++.
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7789999999999999999999999999986654 6788899999999999888766
No 171
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=106.54 Aligned_cols=118 Identities=16% Similarity=0.206 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA----VFFANRALCFLKMKNYVSAEADCTASLKL------DNTYVK 201 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~ 201 (270)
+..+...|..++..|+|++|+..|++++...|.++ .++..+|.++..+|++++|+..+++++.+ .|....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34577889999999999999999999999999984 68999999999999999999999999987 445678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCC
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNI 249 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~ 249 (270)
+++.+|.++..+|++++|+..|++++++.|.. ..++..++.++...|+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999997754 4589999999999998
No 172
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.27 E-value=1.2e-11 Score=104.22 Aligned_cols=121 Identities=9% Similarity=-0.018 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC------CHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNT------YVK 201 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~ 201 (270)
.+...|+.+...|+|++|+..|.+++++.+.. ..++.++|.+|..+|++++|+.+|++++.+.+. ...
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34555888999999999999999999986543 568999999999999999999999999988532 246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCCcch
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++.++|.+|.. |++++|+.+|++++++.|.. ..++..++.++..+|++.+|+.
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999998 99999999999999998754 5788999999999999998877
No 173
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.27 E-value=7.3e-11 Score=88.07 Aligned_cols=100 Identities=16% Similarity=0.089 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q psy6284 148 WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK---NYVSAEADCTASLKLD-N-TYVKAYQRRAAARRSLNHFEDARKD 222 (270)
Q Consensus 148 ~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~a~~~~g~~~~~~g~~~~A~~~ 222 (270)
...+...|.+.+..+|.+..+.+++|.|+.+.+ +.++++..++.++..+ | .+..++|++|.+++++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 456677888888889999999999999999988 7779999999999998 7 6799999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 223 ILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 223 ~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
++++|+++|+|.+|...+..+..++
T Consensus 94 ~~~lL~ieP~n~QA~~Lk~~ie~~~ 118 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELERLIDKAM 118 (152)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988887655
No 174
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.26 E-value=7.3e-11 Score=81.75 Aligned_cols=80 Identities=14% Similarity=0.130 Sum_probs=73.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHH
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVK-AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE--IELAELNR 245 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~--~~l~~~~~ 245 (270)
.+++|.+++..|++++|+..|++++..+|.+.. +++.+|.++..+|++++|++.|+++++++|++..++ ..+..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~~ 82 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVMDILN 82 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999 999999999999999999999999999999999988 66666655
Q ss_pred HhC
Q psy6284 246 KLN 248 (270)
Q Consensus 246 ~~~ 248 (270)
...
T Consensus 83 ~~~ 85 (99)
T 2kc7_A 83 FYN 85 (99)
T ss_dssp HHC
T ss_pred HHH
Confidence 443
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.26 E-value=6.9e-12 Score=107.33 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA-RRS 212 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~-~~~ 212 (270)
.+.+.|..+++.|+|++|+..|+++|+++|++..+++++|.+|..+|++++|+.+|++++.++|++..++..++.+ ...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999998 455
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQA 236 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a 236 (270)
.+..+++...|.+++..+|+++..
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCC
Confidence 678889999999999999988643
No 176
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.26 E-value=2.8e-11 Score=96.49 Aligned_cols=110 Identities=10% Similarity=-0.082 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCC--CCHHH
Q psy6284 133 VYSKEQGNKLVKEG----KWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDN--TYVKA 202 (270)
Q Consensus 133 ~~~~~~g~~~~~~g----~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p--~~~~a 202 (270)
..+...|..+.. + ++++|+..|+++++ +.++.+++++|.+|.. .+++++|+.+|++++...| .++.+
T Consensus 51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a 127 (212)
T 3rjv_A 51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA 127 (212)
T ss_dssp HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence 344555555554 4 55566665555533 3455556666666555 5556666666666665555 23556
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 203 YQRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 203 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
++.+|.+|.. .+++++|+..|++++++ |.++.+...|+.++..
T Consensus 128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence 6666666655 55566666666666655 5555556666655544
No 177
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.25 E-value=4.7e-11 Score=101.85 Aligned_cols=118 Identities=11% Similarity=-0.074 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-c-CHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEG-KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM-K-NYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 132 a~~~~~~g~~~~~~g-~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~-~-~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
...|..++..+...| .+++++..+.++|..+|.+..+|+.++.++..+ + ++++++..+++++..+|.|..+|+.++.
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~w 167 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHW 167 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456788888888888 599999999999999999999999999999888 7 8899999999999999999999999999
Q ss_pred HHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 209 ARRSLNHFE--------DARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 209 ~~~~~g~~~--------~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
++..+|.++ ++++.+.++++.+|.|..||..++.++..++.
T Consensus 168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 168 LYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 998888887 99999999999999999999999999888876
No 178
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.25 E-value=1.1e-10 Score=99.62 Aligned_cols=111 Identities=13% Similarity=0.026 Sum_probs=103.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-C-CHH
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAAARRSL-N-HFE 217 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~-g-~~~ 217 (270)
...+.+..++|+..+.++|.++|.+..+|+.++.++..++ .+++++..+++++..+|.+..+|+.++.++..+ + +++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 3344455679999999999999999999999999999999 599999999999999999999999999999998 8 999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284 218 DARKDILKVLALEPNNKQAEIELAELNRKLNIPL 251 (270)
Q Consensus 218 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 251 (270)
++++.+.++++++|.|..+|...+.+...++...
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999988776
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.25 E-value=2e-11 Score=88.10 Aligned_cols=92 Identities=16% Similarity=0.075 Sum_probs=87.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHH
Q psy6284 164 HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN-------KQA 236 (270)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a 236 (270)
..+..++.+|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+..|++++.++|++ ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999999999999999999988 999
Q ss_pred HHHHHHHHHHhCCCCCcch
Q psy6284 237 EIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 237 ~~~l~~~~~~~~~~~~a~~ 255 (270)
+..++.++..+|++.+++.
T Consensus 82 ~~~la~~~~~~~~~~~A~~ 100 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIH 100 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHH
Confidence 9999999999999988877
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.24 E-value=7.8e-12 Score=111.97 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH--
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA-- 209 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~-- 209 (270)
+..+...|..+++.|+|++|+..|+++++++|.++.+++++|.+|..+|++++|+..++++++++|++..++..++.+
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~ 119 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 119 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHH-----------HHHhhCCCC
Q psy6284 210 RRSLNHFEDARKDIL-----------KVLALEPNN 233 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~-----------~al~~~p~~ 233 (270)
+..+|++++|++.++ +++.++|+.
T Consensus 120 ~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 120 IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 889999999999999 888888864
No 181
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.23 E-value=1.2e-11 Score=107.54 Aligned_cols=124 Identities=15% Similarity=0.088 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV------FFANRALCFLKMKNYVSAEADCTASLKLDNTY------ 199 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 199 (270)
+..+...|..++..|++++|+.+|.+++++.+.... ++.++|.++..+|++++|+..+++++.+.+..
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 446778999999999999999999999998775433 89999999999999999999999999988754
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCCcch
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+++.+|.++..+|++++|+..|++++.+.+.. ..++..++.++..+|++.+++.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 7899999999999999999999999999986543 5689999999999999888765
No 182
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.21 E-value=3.5e-11 Score=90.75 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKW----------GEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-----------NYVSAEADC 189 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~----------~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-----------~~~~A~~~~ 189 (270)
.++.+.+.|..+...+++ ++|+..|++||+++|++..+|+++|.+|..+| ++++|+.+|
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~ 114 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF 114 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHH
Confidence 356788889999888765 59999999999999999999999999999885 899999999
Q ss_pred HHHHhcCCCCH
Q psy6284 190 TASLKLDNTYV 200 (270)
Q Consensus 190 ~~al~~~p~~~ 200 (270)
++|+.++|++.
T Consensus 115 ~kAl~l~P~~~ 125 (158)
T 1zu2_A 115 QQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHCTTCH
T ss_pred HHHHHhCCCCH
Confidence 99999999974
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.21 E-value=1.4e-10 Score=83.24 Aligned_cols=78 Identities=9% Similarity=0.075 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g 207 (270)
.....+...|..++..|+|++|+..|+++++.+|+++.+++++|.|+..+|++++|+..+++++...|+++.......
T Consensus 25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999999999999999999999999987654443
No 184
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.20 E-value=1.7e-10 Score=99.62 Aligned_cols=101 Identities=11% Similarity=-0.051 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCC
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH------DAVFFANRALCFLKMKNYVSAEADCTASLK-----LDNTY 199 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~ 199 (270)
.+..+...|..+...|+|++|+.+|.+++++.+. ...++.++|.++..+|++++|+..+++++. .+|..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 4567788999999999999999999999997432 246899999999999999999999999999 78888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLALEP 231 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p 231 (270)
..+++.+|.++..+|++++|+..|++++++.+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999843
No 185
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.20 E-value=3e-11 Score=100.95 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTY------ 199 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 199 (270)
+..+...|..++..|++++|+..|++++++.+.. ..++.++|.++..+|++++|+..+++++.+.+..
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 262 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 262 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHH
Confidence 4567889999999999999999999999886543 3389999999999999999999999999887655
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhCCCCCcch
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~------~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+++.+|.++..+|++++|+..|++++.+.|.. ..++..++.++..+|++.++..
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 7799999999999999999999999999986643 5588899999999999888776
No 186
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.19 E-value=1.7e-10 Score=91.83 Aligned_cols=119 Identities=11% Similarity=-0.033 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK----NYVSAEADCTASLKLDNTYVKAYQRRA 207 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~al~~~p~~~~a~~~~g 207 (270)
+..+...|..++..+++++|+..|+++++. .++.+++++|.+|.. + ++++|+.+|++++. +.++.+++.+|
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg 92 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence 456677788888888888888888887764 577788888888777 6 78888888888754 46778888888
Q ss_pred HHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284 208 AARRS----LNHFEDARKDILKVLALEP--NNKQAEIELAELNRK----LNIPLSPIK 255 (270)
Q Consensus 208 ~~~~~----~g~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~----~~~~~~a~~ 255 (270)
.+|.. .+++++|+..|+++++.+| +++.++..|+.++.. .+++.+++.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 88876 7788888888888888777 357888888888776 445555444
No 187
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.18 E-value=2.1e-10 Score=94.94 Aligned_cols=110 Identities=13% Similarity=0.025 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C-HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CC-CHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-D-AVFFANRALCFLKMKNYVSAEADCTASLKLD--NT-YVKAYQRRAA 208 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-~-~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~-~~~a~~~~g~ 208 (270)
..+..|..+++.++|++|+.+|++++...+. . ..+++++|.++..+|++++|+.+|++++... |. ...+++++|.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl 216 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM 216 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 5678899999999999999999987664312 1 3589999999999999999999999999655 65 6779999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 209 ARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
++..+|+.++|+..|++++..+|+ ..++..|....
T Consensus 217 aL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 217 ARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPS 251 (282)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence 999999999999999999999999 88887775443
No 188
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.18 E-value=1.7e-10 Score=96.29 Aligned_cols=122 Identities=13% Similarity=-0.035 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV------FFANRALCFLKMKNYVSAEADCTASLKLDNTY------VK 201 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~------~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~ 201 (270)
.+.+.+..++..|+|++|+..|.++++..+..+. .+..+|.++...+++++|+..+++++.+.+.. ..
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4556788999999999999999999998877654 34468999998999999999999999865432 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLAL-------EPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~~-------~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++..+|.+|..+|++++|+..|+++++. .+....++.+++.++..+|++.+|+.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~ 217 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 7999999999999999999999999952 22334688999999999999988876
No 189
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.15 E-value=4.3e-10 Score=101.58 Aligned_cols=124 Identities=10% Similarity=-0.070 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA- 209 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~- 209 (270)
...+...|..+.+.|++++|...|+++++..|.++ .+|.++|.++.++|++++|...|++++...|.....+...|.+
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45677889999999999999999999999999986 6999999999999999999999999999999888888777766
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+...|++++|+..|+++++.+|+++.++..++.++..+|+..++..
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~ 446 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 446 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHH
Confidence 3469999999999999999999999999999999999998776655
No 190
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.15 E-value=6.5e-11 Score=97.97 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY--VKAYQRRAAARR 211 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~ 211 (270)
.....+..+...|+|++|...|...+...|.+. +.+.+|.++++.+++++|+..|+++....+.. ..+++.+|.++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 345668899999999999999999999999888 99999999999999999999999887754222 458999999999
Q ss_pred HcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALE--PN-NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~--p~-~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+|++++|+..|++++.-. |. ...+...++.++..+|+..++..
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999654 65 67899999999999999988876
No 191
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.15 E-value=3e-10 Score=79.23 Aligned_cols=80 Identities=9% Similarity=0.076 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAAA 209 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~ 209 (270)
+..+...|..++..|+|++|+..|+++++++|+++.+|+++|.++..+|++++|+..+++++.+.|. +..+...+..+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~ 86 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA 86 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999998763 34444444444
Q ss_pred HH
Q psy6284 210 RR 211 (270)
Q Consensus 210 ~~ 211 (270)
+.
T Consensus 87 l~ 88 (100)
T 3ma5_A 87 KL 88 (100)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.15 E-value=4.1e-10 Score=97.52 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~ 209 (270)
..+..+.+.|..+++.|+|++|+.+|+++++++|+++.+++++|.+|..++++++|+.+|++++.++|++..++..++.+
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHH
Q psy6284 210 RRSLNHFEDARKD 222 (270)
Q Consensus 210 ~~~~g~~~~A~~~ 222 (270)
+..+++++++.+.
T Consensus 351 ~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 351 KQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999998888654
No 193
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.14 E-value=7.5e-10 Score=85.21 Aligned_cols=82 Identities=9% Similarity=-0.021 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY--VKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 147 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
....|+..|+++++.+|+++.+++++|.++..+|++++|+..|++++..+|++ ..+++.+|.++..+|+.++|+..|+
T Consensus 89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 34568999999999999999999999999999999999999999999999976 6699999999999999999999999
Q ss_pred HHHh
Q psy6284 225 KVLA 228 (270)
Q Consensus 225 ~al~ 228 (270)
++|.
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 194
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.12 E-value=6.4e-10 Score=82.86 Aligned_cols=101 Identities=16% Similarity=0.097 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CC
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFLKMKNYVSAEADCTASLKLDN------TY 199 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~ 199 (270)
+..+...|..++..|++++|+.+|.+++.+.+.. ..++.++|.++..+|++++|+..+++++.+.+ ..
T Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 128 (164)
T 3ro3_A 49 RIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 128 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhH
Confidence 4568889999999999999999999999986543 56899999999999999999999999997743 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
..+++.+|.++..+|++++|+..+++++++...
T Consensus 129 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 129 GRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999987543
No 195
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.10 E-value=1e-09 Score=75.59 Aligned_cols=74 Identities=15% Similarity=0.046 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy6284 162 YPHDAVFFANRALCFLKMKN---YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQ 235 (270)
Q Consensus 162 ~p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 235 (270)
+|+++.++..+|.+++..++ .++|...+++++.++|+++.+++.+|.+++..|+|++|+..|+++++.+|.++.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 68999999999999987766 799999999999999999999999999999999999999999999999998543
No 196
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.07 E-value=3.7e-10 Score=88.15 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=93.6
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHcC
Q psy6284 142 LVKEGKWGEAIEKYNVAIQTYP-HDAVFFANRALCFLKMKNYVSAEADCTASLK------LDNTYVKAYQRRAAARRSLN 214 (270)
Q Consensus 142 ~~~~g~~~~A~~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~a~~~~g~~~~~~g 214 (270)
++..|+|++|...++.... +| ....++.++|.++..+|++++|+..+++++. ..+....+++.+|.++..+|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4678999999996555544 45 6688999999999999999999999999998 45566789999999999999
Q ss_pred CHHHHHHHHHHHHhh---CCC----CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 215 HFEDARKDILKVLAL---EPN----NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 215 ~~~~A~~~~~~al~~---~p~----~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
++++|+..|++++.+ .++ ...++..++.++..+|++.+++.
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ 128 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999998 443 35678999999999999988766
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.05 E-value=4.3e-10 Score=100.63 Aligned_cols=130 Identities=13% Similarity=0.075 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--
Q psy6284 126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKL-- 195 (270)
Q Consensus 126 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-- 195 (270)
.+.+..+....+.+..+..+|+|++|+..|+++|++ -|++ ...+.|+|.+|..+|+|++|+..+++++.+
T Consensus 303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~ 382 (490)
T 3n71_A 303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYM 382 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 344556677788888899999999999999999986 2344 568999999999999999999999999965
Q ss_pred ---CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHH---HHHHHHHHHhCCCCCcch
Q psy6284 196 ---DNTY---VKAYQRRAAARRSLNHFEDARKDILKVLAL-----EPNNKQAE---IELAELNRKLNIPLSPIK 255 (270)
Q Consensus 196 ---~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~---~~l~~~~~~~~~~~~a~~ 255 (270)
-|++ ...++++|.+|..+|++++|+..|++|+++ .|+++... ..+..++.+++.+.++..
T Consensus 383 ~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~ 456 (490)
T 3n71_A 383 KLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEF 456 (490)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 568999999999999999999999999974 67776544 566777766666655544
No 198
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=1.1e-09 Score=91.33 Aligned_cols=85 Identities=14% Similarity=0.045 Sum_probs=75.5
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q psy6284 144 KEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY--VKAYQRRAAARRSLNHFEDARK 221 (270)
Q Consensus 144 ~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~~g~~~~A~~ 221 (270)
..++.++|+..|++++..+|+++.+++++|.++...|++++|+..+.+++..+|++ ..++.++|.++..+|+.++|+.
T Consensus 197 ~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 33334445566667788899999999999999999999999999999999999998 8999999999999999999999
Q ss_pred HHHHHHh
Q psy6284 222 DILKVLA 228 (270)
Q Consensus 222 ~~~~al~ 228 (270)
.|++++.
T Consensus 277 ~~r~al~ 283 (287)
T 3qou_A 277 XYRRQLY 283 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 199
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.01 E-value=1.6e-09 Score=92.96 Aligned_cols=124 Identities=10% Similarity=-0.040 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------C
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA------VFFANRALCFLKMKNYVSAEADCTASLKLD--------N 197 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p 197 (270)
+..+...|..++..|++++|+..|.+++.+.|... .++.++|.++..+|++++|+..+++++.+. |
T Consensus 53 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 132 (373)
T 1hz4_A 53 IVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCc
Confidence 34567788999999999999999999998765432 347889999999999999999999999765 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHhCCCCCcch
Q psy6284 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN-----KQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~-----~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
....++..+|.++...|++++|...+++++.+.|.. ..++..++.++...|++.++..
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 195 (373)
T 1hz4_A 133 MHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARS 195 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345678889999999999999999999999988752 4678888999999999877765
No 200
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.01 E-value=2.4e-09 Score=96.65 Aligned_cols=124 Identities=14% Similarity=0.055 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Q psy6284 132 AVYSKEQGNKLVK-------EGKWG-------EAIEKYNVAIQ-TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196 (270)
Q Consensus 132 a~~~~~~g~~~~~-------~g~~~-------~A~~~y~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 196 (270)
...|...|..+.. .|+++ +|+..|++|++ ..|++..+|.++|.++..+|++++|...|++++.++
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~ 351 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE 351 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence 5667788888876 79987 99999999997 899999999999999999999999999999999999
Q ss_pred CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhCCCCCcch
Q psy6284 197 NTYV-KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN-RKLNIPLSPIK 255 (270)
Q Consensus 197 p~~~-~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~-~~~~~~~~a~~ 255 (270)
|.++ .+|..+|.++...|++++|++.|+++++..|.+...+...+.+. ...|+..++..
T Consensus 352 p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 352 DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHH
Confidence 9986 69999999999999999999999999999998877776655553 34677666554
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.00 E-value=3e-09 Score=75.67 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT--YVKAYQRRAAAR 210 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~ 210 (270)
..+...|..++..|++++|+..|++++..+|.+..+++++|.++..+|++++|+..|++++.++|. +..+...+...+
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999999999999999874 444555554444
Q ss_pred HH
Q psy6284 211 RS 212 (270)
Q Consensus 211 ~~ 212 (270)
..
T Consensus 100 ~~ 101 (115)
T 2kat_A 100 RR 101 (115)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 202
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.98 E-value=1e-08 Score=72.03 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=37.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284 169 FANRALCFLKMKNYVSAEADCTASLKLD-------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241 (270)
Q Consensus 169 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 241 (270)
++.+|..++..++|..|+.++++|+... +.....+..+|.+++.+|+++.|+..++++++++|++..+..++.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3444444444444444444444444321 233445555555555555555555555555555555555555554
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.97 E-value=1.2e-08 Score=75.48 Aligned_cols=98 Identities=10% Similarity=-0.086 Sum_probs=87.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS- 212 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~- 212 (270)
.|..+...+.+++|+..|+++.+. .++.+++++|.+|.. .+++++|+.+|+++... .++.+++++|.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence 688888888999999999999886 789999999999999 89999999999999987 689999999999999
Q ss_pred ---cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy6284 213 ---LNHFEDARKDILKVLALEPNNKQAEIELA 241 (270)
Q Consensus 213 ---~g~~~~A~~~~~~al~~~p~~~~a~~~l~ 241 (270)
.+++++|+..|+++.+. .++.+...|+
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred CCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 89999999999999987 5666666554
No 204
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.96 E-value=4e-09 Score=90.52 Aligned_cols=124 Identities=11% Similarity=-0.004 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC------H
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-----VFFANRALCFLKMKNYVSAEADCTASLKLDNTY------V 200 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~ 200 (270)
+......|..++..|++++|+..+.+++...|... .++.++|.++...|++++|+..+++++.+.|.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 45567789999999999999999999999887653 378899999999999999999999999876532 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALE--------PNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+++.+|.++...|++++|+..|++++++. |....++..++.++...|++.++..
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 457889999999999999999999999976 3345678889999999999988766
No 205
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.93 E-value=1.3e-08 Score=89.70 Aligned_cols=111 Identities=11% Similarity=-0.008 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CC
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKL-----DN 197 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p 197 (270)
.+....+.+......|+|++|+..|+++|++ .|++ ...+.|+|.+|..+|+|++|+..+++++.+ -|
T Consensus 297 ~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~ 376 (433)
T 3qww_A 297 YARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV 376 (433)
T ss_dssp HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC
Confidence 3444555566666789999999999999985 3444 468999999999999999999999999965 34
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHH
Q psy6284 198 TY---VKAYQRRAAARRSLNHFEDARKDILKVLAL-----EPNNKQAEIELA 241 (270)
Q Consensus 198 ~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~l~ 241 (270)
++ ...++++|.+|..+|++++|+..|++|+++ .|+++.......
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 44 557999999999999999999999999885 578877665444
No 206
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.92 E-value=1.6e-08 Score=70.98 Aligned_cols=77 Identities=13% Similarity=-0.008 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY-------PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQ 204 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 204 (270)
+..++..|..+++.|+|..|+.-|.+|++.. +....++.++|.|+.++|+++.|+..+++++.++|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 4467889999999999999999999999864 235789999999999999999999999999999999999988
Q ss_pred HHHH
Q psy6284 205 RRAA 208 (270)
Q Consensus 205 ~~g~ 208 (270)
+++.
T Consensus 85 n~~~ 88 (104)
T 2v5f_A 85 NLKY 88 (104)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 8873
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.92 E-value=1.2e-08 Score=87.18 Aligned_cols=132 Identities=16% Similarity=0.090 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHH-------HHH-HHHH--HHHhcCCC
Q psy6284 132 AVYSKEQGNKLVKEGK---WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV-------SAE-ADCT--ASLKLDNT 198 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~-------~A~-~~~~--~al~~~p~ 198 (270)
|..++-+|..++..++ +.+|+.+|++|++++|+++.++..++.||.....+. +++ ..+. .++..+|.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~ 275 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNN 275 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCc
Confidence 4566677777776554 589999999999999999999999999986432211 111 1222 23356788
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch---HhhhcCCCc
Q psy6284 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK---VDFLHNPYH 264 (270)
Q Consensus 199 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~---~~~~~~~~~ 264 (270)
.+.++..+|.++...|++++|+..+++++.++|+ ..++..++.++...|++.+++. ..+..+|..
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9999999999888889999999999999999974 7788889999999999988877 777777754
No 208
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.89 E-value=2.9e-08 Score=71.41 Aligned_cols=101 Identities=15% Similarity=0.075 Sum_probs=89.2
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHhcC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q psy6284 147 KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVS---AEADCTASLKLD-N-TYVKAYQRRAAARRSLNHFEDARK 221 (270)
Q Consensus 147 ~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~---A~~~~~~al~~~-p-~~~~a~~~~g~~~~~~g~~~~A~~ 221 (270)
....+...|.+.+...+....+.+++|.|+.+...... ++..++..+..+ | .....+|.+|..++++|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34566777888888888999999999999999887666 999999999887 5 578899999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 222 DILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 222 ~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
+++.+|+.+|+|.+|......+..++
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~~i~~~i 121 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELERLIDKAM 121 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999888876553
No 209
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.88 E-value=5.4e-08 Score=86.94 Aligned_cols=119 Identities=10% Similarity=-0.053 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHH
Q psy6284 131 SAVYSKEQGNKLVK----EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKA 202 (270)
Q Consensus 131 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a 202 (270)
.+..+...|..++. .+++++|+..|.++.+. .++.+++++|.+|.. .+++++|+.+|++++.. +++.+
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a 149 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSG 149 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 45667888999888 89999999999998864 578889999999988 88999999999998775 57889
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284 203 YQRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK----LNIPLSPIK 255 (270)
Q Consensus 203 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~----~~~~~~a~~ 255 (270)
++.+|.+|.. .+++++|++.|+++++. +++.++..++.++.. .+++.+++.
T Consensus 150 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 150 QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 9999999987 78999999999999876 688999999998887 566555555
No 210
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.87 E-value=1.5e-08 Score=89.92 Aligned_cols=107 Identities=16% Similarity=0.057 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284 134 YSKEQGNKLVKEG---KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM----KNYVSAEADCTASLKLDNTYVKAYQRR 206 (270)
Q Consensus 134 ~~~~~g~~~~~~g---~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~al~~~p~~~~a~~~~ 206 (270)
.+...|..+...| ++++|+..|+++.+..|.....++++|.+|... +++++|+.+|+++. |.++.+++++
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 4566777777777 788888888888887777777777777777554 57777777777776 7777777777
Q ss_pred HHH-H--HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy6284 207 AAA-R--RSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245 (270)
Q Consensus 207 g~~-~--~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 245 (270)
|.+ + ...+++++|+..|+++++. +++.+...|+.++.
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
Confidence 777 3 4577777777777777743 47777777777776
No 211
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.86 E-value=6.5e-08 Score=86.39 Aligned_cols=119 Identities=8% Similarity=-0.019 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhcCCCCHHH
Q psy6284 131 SAVYSKEQGNKLVK----EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----MKNYVSAEADCTASLKLDNTYVKA 202 (270)
Q Consensus 131 ~a~~~~~~g~~~~~----~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~a 202 (270)
.+..+...|..+.. .+++++|+..|+++.+. .++.+++++|.+|.. .+++++|+.+|++++.. .++.+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a 185 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWS 185 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHH
Confidence 34567788999888 88999999999999775 678999999999988 88999999999999886 57899
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284 203 YQRRAAARRS----LNHFEDARKDILKVLALEPNNKQAEIELAELNRK----LNIPLSPIK 255 (270)
Q Consensus 203 ~~~~g~~~~~----~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~----~~~~~~a~~ 255 (270)
++.+|.+|.. .+++++|+..|+++++. +++.+...++.++.. .+++.+++.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999999998 89999999999999875 678999999999886 455555544
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.85 E-value=4.1e-08 Score=86.49 Aligned_cols=116 Identities=11% Similarity=0.054 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCC
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY-----PHD---AVFFANRALCFLKMKNYVSAEADCTASLKL-----DNT 198 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~-----p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~ 198 (270)
+....+....+.++|+|++|+..|+++++.. |++ ...+.|+|.+|..+|+|++|+..+++++.+ -|+
T Consensus 287 ~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~ 366 (429)
T 3qwp_A 287 VQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS 366 (429)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC
Confidence 4455666777889999999999999999852 344 468999999999999999999999999965 344
Q ss_pred C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHH---HHHHHHHHh
Q psy6284 199 Y---VKAYQRRAAARRSLNHFEDARKDILKVLAL-----EPNNKQAEI---ELAELNRKL 247 (270)
Q Consensus 199 ~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~---~l~~~~~~~ 247 (270)
+ ...++++|.+|..+|++++|+..|++|+++ .|+++.... +|+.+...+
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 4 457999999999999999999999999874 678775554 455555443
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.82 E-value=2.7e-08 Score=73.57 Aligned_cols=102 Identities=13% Similarity=0.001 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q psy6284 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS----LNHFEDARK 221 (270)
Q Consensus 146 g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----~g~~~~A~~ 221 (270)
+++++|+..|+++.+.. ++.+. +|.+|...+.+++|+.+|+++... .++.+++++|.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 47899999999999886 44444 999999999999999999999987 689999999999998 899999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----hCCCCCcch
Q psy6284 222 DILKVLALEPNNKQAEIELAELNRK----LNIPLSPIK 255 (270)
Q Consensus 222 ~~~~al~~~p~~~~a~~~l~~~~~~----~~~~~~a~~ 255 (270)
.|+++.+. .++.+...|+.++.. .++..+++.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 118 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVK 118 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 99999987 789999999999987 555555544
No 214
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.73 E-value=8.8e-08 Score=84.96 Aligned_cols=102 Identities=10% Similarity=-0.027 Sum_probs=81.6
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-H--HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 136 KEQGNKLVKE----GKWGEAIEKYNVAIQTYPHDAVFFANRALC-F--LKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 136 ~~~g~~~~~~----g~~~~A~~~y~~al~~~p~~~~~~~~~a~~-~--~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
...|..+... +++++|+..|+++. |.++.+++++|.+ + ...+++++|+.+|++++.. .++.+++.+|.
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~ 291 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGK 291 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 5667776554 68888888888887 8888888888888 4 4678888888888888754 47888888888
Q ss_pred HHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 209 ARRSLN-----HFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 209 ~~~~~g-----~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
+|. .| ++++|+.+|+++. |+++.+...|+.++..
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHT
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHC
Confidence 887 55 8888888888888 8888888888887765
No 215
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.64 E-value=1.4e-07 Score=77.57 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=80.0
Q ss_pred CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-cCCHH
Q psy6284 147 KWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKM-----KNYVSAEADCTASLKLDNTY-VKAYQRRAAARRS-LNHFE 217 (270)
Q Consensus 147 ~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~-~g~~~ 217 (270)
....|...++++++++|+ +..+|..+|..|... |+.+.|..+|++++.++|+. ..+++.+|..++. .|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 367899999999999999 678999999999996 99999999999999999975 9999999999988 59999
Q ss_pred HHHHHHHHHHhhCCC
Q psy6284 218 DARKDILKVLALEPN 232 (270)
Q Consensus 218 ~A~~~~~~al~~~p~ 232 (270)
+|.+.+++++..+|.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999999887
No 216
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.62 E-value=1.2e-07 Score=83.00 Aligned_cols=104 Identities=18% Similarity=0.160 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----------------
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN---------------- 197 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---------------- 197 (270)
.+...|..++..|.|++|+.+|.++ ..|..+|.|+.++|+|++|++++.++. +|
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef 193 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF 193 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcH
Confidence 5667788888888888888888766 357778888888888888888887772 22
Q ss_pred -----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 198 -----------TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 198 -----------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
.++.-...+...|...|++++|+..+++++.+++.+..++..++.++.+-
T Consensus 194 ~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky 254 (449)
T 1b89_A 194 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 254 (449)
T ss_dssp HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence 11112223446788889999999999999999999999999999988754
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.61 E-value=3.3e-07 Score=62.91 Aligned_cols=68 Identities=15% Similarity=-0.014 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy6284 132 AVYSKEQGNKLVKEGK---WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY 199 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (270)
+..+...|..++..++ ..+|...++++|.++|+++.+++.+|..++..|+|++|+..+++++..+|..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3456777888876665 7999999999999999999999999999999999999999999999999974
No 218
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.56 E-value=6.4e-07 Score=87.69 Aligned_cols=115 Identities=14% Similarity=0.027 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---------
Q psy6284 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT--------- 198 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------- 198 (270)
++.....|.+.|..+...|++++|+..|.++ +++..|.+.|.++.++|+|++|++.+..+.+..++
T Consensus 1101 rvn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~Laf 1175 (1630)
T 1xi4_A 1101 RCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF 1175 (1630)
T ss_pred hcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHH
Confidence 3344567889999999999999999999775 88899999999999999999999999887755432
Q ss_pred ------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 199 ------------------YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 199 ------------------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
+...++..|..+...|+|++|+..|.++ ..|..++.++.++|++.+|+.
T Consensus 1176 aYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1176 ALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence 3346778888888899999999888886 478888888888888877776
No 219
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.56 E-value=1.8e-07 Score=83.72 Aligned_cols=99 Identities=8% Similarity=-0.046 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CC
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKL-----DN 197 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p 197 (270)
.+..+.+.|..|..+|+|++|+.+|+++|++ -|++ ...++|+|.+|..+|++++|+..+++|+.+ -|
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~ 429 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4677888999999999999999999999986 3444 568999999999999999999999999965 45
Q ss_pred CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 198 TYV---KAYQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 198 ~~~---~a~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
+++ ...-.++.++..++.+++|...|.++.+.
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 45678899999999999999999988654
No 220
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.55 E-value=6.1e-07 Score=87.84 Aligned_cols=106 Identities=18% Similarity=0.151 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----------------
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN---------------- 197 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---------------- 197 (270)
.+...|..++..|+|++|+.+|.++ ..|..+|.|+.++|++++|+++++++...++
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHH
Confidence 5667999999999999999999996 4799999999999999999999999854443
Q ss_pred ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 198 ---------TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 198 ---------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
.++.-+..++..|...|.|++|+..|+++|.++|.+...+..++.++.+-
T Consensus 1269 A~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1269 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 13445556777888999999999999999999999999999999988764
No 221
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.55 E-value=5.6e-07 Score=75.34 Aligned_cols=120 Identities=9% Similarity=-0.125 Sum_probs=97.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC----CHHHHHHH--
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT----YVKAYQRR-- 206 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~a~~~~-- 206 (270)
+.-.|..+...|++++|+..+.++|...| .+..++..++.+++++|+.+.|...+++....+|+ .......+
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHH
Confidence 35678999999999999999999999887 78899999999999999999999999999999983 23334444
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 207 AAARRSLN--HFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 207 g~~~~~~g--~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|.+....| ++.+|...|+++....|+.......+. ++..+|++.+|..
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence 44466666 999999999999888887333333333 8889999888766
No 222
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.55 E-value=2.3e-06 Score=71.63 Aligned_cols=116 Identities=5% Similarity=-0.108 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-HHHHHHHHHHHHHcc--CHHHHHHHHHHHHhcCCCC--H
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH-----D-AVFFANRALCFLKMK--NYVSAEADCTASLKLDNTY--V 200 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~-----~-~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~--~ 200 (270)
..+.....+..+.+.|+.+.|.+.+++..+.+|+ + ....+.-|.+.+..| ++.+|...|+++....|++ .
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~ 214 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQ 214 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH
Confidence 4445566788899999999999999999999983 2 333333355566667 8999999999998888873 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHhCC
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLAL----------EPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~----------~p~~~~a~~~l~~~~~~~~~ 249 (270)
..+++ ++..+|++++|.+.++.+++. +|+|+.+..++..+...+|+
T Consensus 215 ~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 215 LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 34444 899999999999999988887 58999999999888888887
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.52 E-value=4.7e-07 Score=67.46 Aligned_cols=79 Identities=13% Similarity=0.010 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEG---KWGEAIEKYNVAIQTY-P-HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR 206 (270)
Q Consensus 132 a~~~~~~g~~~~~~g---~~~~A~~~y~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 206 (270)
.+..++.|..+.+.+ ++.+++..++..++.+ | ++.+++|++|..++++++|++|..+|+++++++|+|..|...+
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 456788899999988 7789999999999998 7 5689999999999999999999999999999999999887766
Q ss_pred HHHH
Q psy6284 207 AAAR 210 (270)
Q Consensus 207 g~~~ 210 (270)
-.+-
T Consensus 112 ~~ie 115 (152)
T 1pc2_A 112 RLID 115 (152)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 224
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.9e-07 Score=81.37 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=87.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-----------------VFFANRALCFLKMKNYVSAEADCTASLKLDN 197 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 197 (270)
..+.|..+.+.|+|++|+..|.++++..|... .++.++|.+|..+|++++|++.+.+++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34557777888888888888888888777542 3578888888888888888888888887655
Q ss_pred CCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 198 TYVK------AYQRRAAARRSLNHFEDARKDILKVLALEPN------NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 198 ~~~~------a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
...+ +...+|.++...|++++|+..+++++.+.+. -..+...++.++...|++.+++.
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA 156 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence 4322 3445667777778888888888887765432 24677778888888888777655
No 225
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.47 E-value=5.1e-07 Score=78.70 Aligned_cols=124 Identities=13% Similarity=-0.001 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC------CC
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA------VFFANRALCFLKMKNYVSAEADCTASLKLDN------TY 199 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~ 199 (270)
...+.+.|..|+..|+|++|+..|.+++...+... .+..+++.++...++++.|+..+++++...+ ..
T Consensus 55 ~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 55 ETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 34577889999999999999999999888765542 3456677777777888888888888776532 33
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLAL------EPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..++.++|.++...|++++|+..+++++.. .|....++..++.++..+|++.++..
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 196 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKA 196 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHH
Confidence 567788888888888888888888887765 33345677788888888888766644
No 226
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.39 E-value=1.8e-05 Score=57.75 Aligned_cols=85 Identities=15% Similarity=0.025 Sum_probs=75.4
Q ss_pred CCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy6284 163 PHDAVFFANRALCFLKMKN---YVSAEADCTASLKLDN-TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI 238 (270)
Q Consensus 163 p~~~~~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 238 (270)
.-...+.++.|.|+.+... ..+++..++..+...| .....+|.+|..++++|+|++|+++.+.+|+.+|+|.+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 4567899999999998765 4579999999999888 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q psy6284 239 ELAELNRKL 247 (270)
Q Consensus 239 ~l~~~~~~~ 247 (270)
....+..++
T Consensus 116 Lk~~Ie~~i 124 (144)
T 1y8m_A 116 LKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.37 E-value=3.7e-06 Score=69.18 Aligned_cols=134 Identities=8% Similarity=-0.056 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHH------cCCHHHHHHH-----HHHHHh-hCCCCHHHHHHHHHHHHH---c--------cCHHHHH
Q psy6284 130 ASAVYSKEQGNKLVK------EGKWGEAIEK-----YNVAIQ-TYPHDAVFFANRALCFLK---M--------KNYVSAE 186 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~------~g~~~~A~~~-----y~~al~-~~p~~~~~~~~~a~~~~~---~--------~~~~~A~ 186 (270)
.+|..++.+|..|.. ...+.+++.. +..++. .+|+++.+++=.|..... . +....|.
T Consensus 104 ~RA~~Ly~ra~~y~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~ 183 (301)
T 3u64_A 104 SRARKLYLRGARYALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAV 183 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHH
Confidence 345555555555432 2344444432 334443 467777777766666544 1 2357899
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHh-CCCCCcch--
Q psy6284 187 ADCTASLKLDNT--YVKAYQRRAAARRSL-----NHFEDARKDILKVLALEPNN-KQAEIELAELNRKL-NIPLSPIK-- 255 (270)
Q Consensus 187 ~~~~~al~~~p~--~~~a~~~~g~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~a~~~l~~~~~~~-~~~~~a~~-- 255 (270)
..+++++++||+ +..+|..+|..|... |+.++|.++|+++++++|+. ..++...+..++.. |++..+..
T Consensus 184 a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L 263 (301)
T 3u64_A 184 MMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEAL 263 (301)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999 667999999999995 99999999999999999975 99999999998875 77666555
Q ss_pred -HhhhcCCC
Q psy6284 256 -VDFLHNPY 263 (270)
Q Consensus 256 -~~~~~~~~ 263 (270)
+.+...|+
T Consensus 264 ~kAL~a~p~ 272 (301)
T 3u64_A 264 DRALAIDPE 272 (301)
T ss_dssp HHHHHCCGG
T ss_pred HHHHcCCCC
Confidence 44444443
No 228
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.36 E-value=7.4e-06 Score=59.07 Aligned_cols=84 Identities=15% Similarity=0.031 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHHccCH---HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284 164 HDAVFFANRALCFLKMKNY---VSAEADCTASLKLDN-TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE 239 (270)
Q Consensus 164 ~~~~~~~~~a~~~~~~~~~---~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 239 (270)
-.+.+.++.|.|+.+.... ..++..++..+..+| .....+|.+|..++++|+|++|+++.+.+|+.+|+|.+|...
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 3567889999999887654 568999999999888 458899999999999999999999999999999999999998
Q ss_pred HHHHHHHh
Q psy6284 240 LAELNRKL 247 (270)
Q Consensus 240 l~~~~~~~ 247 (270)
...+..++
T Consensus 118 k~~Ie~ki 125 (134)
T 3o48_A 118 KSMVEDKI 125 (134)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876554
No 229
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.30 E-value=5.2e-06 Score=70.85 Aligned_cols=78 Identities=10% Similarity=0.055 Sum_probs=70.9
Q ss_pred hhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284 160 QTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE 239 (270)
Q Consensus 160 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 239 (270)
..+|.++.++..+|.++...|++++|+..+++++.++| +..+|..+|.++...|++++|++.|.+|+.++|..+ .+..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~ 348 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYW 348 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHH
Confidence 56789999999999999999999999999999999997 477889999999999999999999999999999886 3443
No 230
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.11 E-value=3.4e-06 Score=73.83 Aligned_cols=126 Identities=13% Similarity=0.037 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------------CCHHHHHHHHHHHHHccCHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP-------------------------HDAVFFANRALCFLKMKNYVS 184 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p-------------------------~~~~~~~~~a~~~~~~~~~~~ 184 (270)
..+..+...|..+.+.|+|++|++.|.++..... .++.-...+..+|.+.|.+++
T Consensus 146 ~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 146 NNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHH
Confidence 3445677889999999999999999999832100 112223334578899999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 185 AEADCTASLKLDNTYVKAYQRRAAARRS--LNHFEDARKDILKVLALEP-----NNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 185 A~~~~~~al~~~p~~~~a~~~~g~~~~~--~g~~~~A~~~~~~al~~~p-----~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|+..+++++.+++.+...+..+|.+|.+ .++..++++.|...+.+.| ++...|..+.-++...+++..|+.
T Consensus 226 ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 226 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999999999999999999999999865 6788899999999999989 899999999999999999887766
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.11 E-value=2.6e-05 Score=58.53 Aligned_cols=110 Identities=13% Similarity=0.099 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---------HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC--
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA---------VFFANRALCFLKMKNYVSAEADCTASLKLD---NTY-- 199 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~-- 199 (270)
.+++....++..|.|+.|+.....++.+..+++ .++..+|.+++..++|..|...|+++|.+. +.+
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467778899999999999999999877643332 388999999999999999999999987542 111
Q ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 200 --------------------VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 200 --------------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
....|..|.|+..++++++|+..++..- ..-..+.....|+.++
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANLY 165 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHHC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHHh
Confidence 2577999999999999999999876431 1224556666666553
No 232
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.92 E-value=2.6e-05 Score=68.60 Aligned_cols=72 Identities=8% Similarity=0.051 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CC
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKL-----DN 197 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p 197 (270)
.+..+.+.|..|..+|+|++|+.+|+++|++ -|++ ...++|+|.+|..+|++++|+..+++|+.+ -|
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~ 418 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGK 418 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Confidence 4667888999999999999999999999986 2344 568999999999999999999999999965 46
Q ss_pred CCHHH
Q psy6284 198 TYVKA 202 (270)
Q Consensus 198 ~~~~a 202 (270)
+++..
T Consensus 419 ~Hp~~ 423 (433)
T 3qww_A 419 DHPYI 423 (433)
T ss_dssp TCHHH
T ss_pred CChHH
Confidence 66543
No 233
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.86 E-value=3.1e-05 Score=68.10 Aligned_cols=81 Identities=7% Similarity=-0.079 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CC
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT-----YPHD---AVFFANRALCFLKMKNYVSAEADCTASLKL-----DN 197 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p 197 (270)
.+..+.+.|..|..+|+|++|+.+|.++|.+ -|++ ...++|+|.+|..+|++++|+..+++|+.+ -|
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~ 407 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR 407 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667888999999999999999999999985 2344 568999999999999999999999999965 46
Q ss_pred CCHH---HHHHHHHHHH
Q psy6284 198 TYVK---AYQRRAAARR 211 (270)
Q Consensus 198 ~~~~---a~~~~g~~~~ 211 (270)
+++. .+.+++.+..
T Consensus 408 ~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 408 EHSLIEDLILLLEECDA 424 (429)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 6654 3444555543
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.82 E-value=0.0001 Score=52.85 Aligned_cols=79 Identities=13% Similarity=0.001 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGE---AIEKYNVAIQTY-P-HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRR 206 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~---A~~~y~~al~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~ 206 (270)
....++.|..+.+..+... +|..+...+... | ..-+++|.+|..++++|+|..|...++.+|+.+|+|..|.-..
T Consensus 35 ~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 35 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3456777888888887766 999999988876 4 4567999999999999999999999999999999999887766
Q ss_pred HHHH
Q psy6284 207 AAAR 210 (270)
Q Consensus 207 g~~~ 210 (270)
..+-
T Consensus 115 ~~i~ 118 (126)
T 1nzn_A 115 RLID 118 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 235
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.75 E-value=0.00024 Score=65.93 Aligned_cols=117 Identities=14% Similarity=0.049 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----------CCC--
Q psy6284 133 VYSKEQGNKLVKEGKWGEAI-EKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-----------DNT-- 198 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~-~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------~p~-- 198 (270)
..|...+..+...|+.++|+ ..|.+|+..+|.+..+|...+......|+++.|...|++++.. .|.
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 34556666666667777776 7777777777777777777777777777777777777777753 142
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHhCC
Q psy6284 199 ---------YVKAYQRRAAARRSLNHFEDARKDILKVLAL-EPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 199 ---------~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~l~~~~~~~~~ 249 (270)
...+|...+....+.|+.+.|.+.|.+|++. .+....++...+.+....++
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTS
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCC
Confidence 3345666666666667777777777777766 33344555555555544443
No 236
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.75 E-value=0.00028 Score=65.56 Aligned_cols=122 Identities=8% Similarity=-0.108 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQT-YPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~-~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
.|...+....+.|+.+.|...|.+|+.. .+....+|...|.+-...+ +++.|...|+++++..|+++..|...+....
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4666666667789999999999999987 4455778887777766665 4999999999999999999999989999888
Q ss_pred HcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhCCCCCcch
Q psy6284 212 SLNHFEDARKDILKVLALEPN---NKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~p~---~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
..|+.+.|...|++++...|+ ....|..........|+......
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999883 56788888888888888755444
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.62 E-value=0.00087 Score=48.27 Aligned_cols=78 Identities=6% Similarity=-0.037 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGK---WGEAIEKYNVAIQTYPH-DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
...++-+..+.+..+ ..++|..+...+...|. .-+.++.+|..++++|+|++|..+++.++..+|+|..|.-....
T Consensus 41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 356677777777764 45799999999988884 47899999999999999999999999999999999988776655
Q ss_pred HH
Q psy6284 209 AR 210 (270)
Q Consensus 209 ~~ 210 (270)
+-
T Consensus 121 Ie 122 (134)
T 3o48_A 121 VE 122 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.61 E-value=0.0011 Score=48.31 Aligned_cols=78 Identities=6% Similarity=-0.037 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGK---WGEAIEKYNVAIQTYPH-DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAA 208 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~---~~~A~~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~ 208 (270)
+..++.+..+.+..+ ..++|..+...+...|. .-+++|.+|..++++|+|.+|..+++.+|+.+|+|..|.-....
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~ 119 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM 119 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 456777888887765 45799999999998884 56799999999999999999999999999999999988766554
Q ss_pred HH
Q psy6284 209 AR 210 (270)
Q Consensus 209 ~~ 210 (270)
+-
T Consensus 120 Ie 121 (144)
T 1y8m_A 120 VE 121 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.32 E-value=0.013 Score=43.19 Aligned_cols=99 Identities=14% Similarity=0.015 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy6284 149 GEAIEKYNVAIQTYPHD--------AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR 220 (270)
Q Consensus 149 ~~A~~~y~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~ 220 (270)
+.-++.|.+|+..-|-. ..+|.+.|.. ..+++.++|.+.|+.++.+...+++.|...|.--.++|+...|+
T Consensus 36 ~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR 114 (161)
T 4h7y_A 36 NKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK 114 (161)
T ss_dssp HHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence 77778899999877653 3467777655 67799999999999999998889999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 221 KDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 221 ~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
+.+.+++-+.|...+..... ....+.|.
T Consensus 115 kILg~AiG~~~k~~~~le~a-~~nl~~~~ 142 (161)
T 4h7y_A 115 QLLQKAVERGAVPLEMLEIA-LRNLNLQK 142 (161)
T ss_dssp HHHHHHHHTTCBCHHHHHHH-HHHHHTTC
T ss_pred HHHHHHhccCCCcHHHHHHH-HHhhhcCC
Confidence 99999999999887665533 22334444
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.29 E-value=0.0091 Score=51.58 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----------------------AVFFANRALCFLKMKNYVSAEADCT 190 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~----------------------~~~~~~~a~~~~~~~~~~~A~~~~~ 190 (270)
+.+...|......|+.+.|+..+.+|+.+.... ..+...++.+++..|++.+|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 345566777778899999999999999875221 1255567788889999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 191 ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 191 ~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
+++..+|-+..+|..+-.++...|+..+|++.|+++-+
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988754
No 241
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.23 E-value=0.0021 Score=48.13 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC----------------------CHHHHHHHHHHHHHccCHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY---PH----------------------DAVFFANRALCFLKMKNYVS 184 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~---p~----------------------~~~~~~~~a~~~~~~~~~~~ 184 (270)
..++.+.-.|+.+|.+++|..|...|++||... +. +.++.+.+|.||.+++++++
T Consensus 61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~ 140 (167)
T 3ffl_A 61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKD 140 (167)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHH
Confidence 345677888999999999999999999998642 11 12688999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 185 AEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 185 A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
|+..++.+ -.....++....+|..|
T Consensus 141 Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 141 AIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred HHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 99976432 22335677777777654
No 242
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.18 E-value=0.014 Score=52.09 Aligned_cols=116 Identities=9% Similarity=-0.069 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH------------------------------------
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALC------------------------------------ 175 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~------------------------------------ 175 (270)
...|...+..+...|+.+.|...|.+|+.. |.+...+...+..
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 345777788888899999999999999999 9876554433322
Q ss_pred ----HHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 176 ----FLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN-HFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 176 ----~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
..+.++.+.|...|.++ ...+.....|...|..-...+ +.+.|...|+.+++.-|+++..+.........+|+
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence 22356677888888888 433345566666676665555 58889999999998888888776666555555554
No 243
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=97.13 E-value=0.029 Score=42.17 Aligned_cols=98 Identities=13% Similarity=0.018 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh--c---------------CCCC
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK--L---------------DNTY 199 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~---------------~p~~ 199 (270)
-.+..++-.|+|..|+-.+ ..-+.+.+.+..++||.++++|..|+.+.++.+. . +|.+
T Consensus 38 L~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D 112 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD 112 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred hhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence 3478889999999887664 3446788899999999999999999999999992 2 3444
Q ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284 200 VKA-YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE 239 (270)
Q Consensus 200 ~~a-~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 239 (270)
... +.-+|..+...|+-++|+.+|.......|=.+.+-+.
T Consensus 113 kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnl 153 (242)
T 3kae_A 113 EEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENL 153 (242)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHH
Confidence 444 4456999999999999999999999999877666543
No 244
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.63 E-value=0.015 Score=51.87 Aligned_cols=80 Identities=13% Similarity=-0.034 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
++..+|.+......+..|..+|.+|+.+.|++..+|..+|.+....|+.-+|+-+|.+++....-.+.+..+|..+..+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 45567777777777788888888888888888888888888888888888888888888888777888888888887664
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0071 Score=56.51 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVL 227 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 227 (270)
++..-+..++..++|+-|+.+..+|+..-|.....|+.++.+|..+|+|+.|+-.++-|-
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 444456667788999999999999999999999999999999999999999998888773
No 246
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.47 E-value=0.068 Score=47.56 Aligned_cols=113 Identities=8% Similarity=-0.107 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMK-NYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
.|..-+....+.++.+.|...|.+| ...+.....|...|..-...+ +.+.|...|+.++...|+.+..+...+.....
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~ 366 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR 366 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4555566666778899999999999 433335567777777766666 69999999999999999999888888888889
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCC
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPL 251 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~ 251 (270)
.|+.+.|...|+++ +.....|..........|+..
T Consensus 367 ~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 367 IGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHH
T ss_pred cCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHH
Confidence 99999999999987 345677777776666667643
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.013 Score=54.66 Aligned_cols=60 Identities=20% Similarity=0.158 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTAS 192 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 192 (270)
..+..++..+.++|+|+.|+..-++|+...|.+...|+.|+.||..+|+|+.|+-.++-+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 356677888899999999999999999999999999999999999999999999877665
No 248
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.33 E-value=0.012 Score=43.35 Aligned_cols=94 Identities=11% Similarity=-0.007 Sum_probs=73.2
Q ss_pred hhCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy6284 160 QTYPHDAVFFANRALCFLKMKNY------VSAEADCTASLKLDNT--------YVKAYQRRAAARRSLNHFEDARKDILK 225 (270)
Q Consensus 160 ~~~p~~~~~~~~~a~~~~~~~~~------~~A~~~~~~al~~~p~--------~~~a~~~~g~~~~~~g~~~~A~~~~~~ 225 (270)
-+.|++++.|.+......+.|+. +.-++.|++|+..-|. +...|.+.|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 36899999999999888888998 8899999999987663 24456666654 577999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhCCCCCcc
Q psy6284 226 VLALEPNNKQAEIELAELNRKLNIPLSPI 254 (270)
Q Consensus 226 al~~~p~~~~a~~~l~~~~~~~~~~~~a~ 254 (270)
|+.+......+|...+.-..+.|+...|-
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kAR 114 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSK 114 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence 99998888777777777777777765543
No 249
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.28 E-value=0.036 Score=49.40 Aligned_cols=80 Identities=13% Similarity=0.023 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 133 ~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+...|....-...+..|..+|.+|+.+.|.+...|.-+|.+....++.-+|+-.|.+++.....++.|.-++...+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999998877788888877777654
No 250
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.20 E-value=0.071 Score=47.59 Aligned_cols=109 Identities=7% Similarity=-0.073 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-NTYVKAYQRRAAARR 211 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~ 211 (270)
.+...-..+.+.|++++|+..|.+..+.. .-+...|..+-.+|.+.|+.++|...+++..... ..+...|..+-.++.
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 45556667777888888888887766542 2245667677777778888888888887777543 235567777777788
Q ss_pred HcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHH
Q psy6284 212 SLNHFEDARKDILKVLAL--EPNNKQAEIELAEL 243 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~--~p~~~~a~~~l~~~ 243 (270)
+.|+.++|.+.|++.-+. .|+ ...+..+...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps-~~T~~~l~~~ 219 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVS-KSTFDMIEEW 219 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBC-HHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcC-HHHHHHHHHH
Confidence 888888888888776543 343 3344444433
No 251
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=95.96 E-value=0.2 Score=44.65 Aligned_cols=111 Identities=9% Similarity=-0.018 Sum_probs=89.4
Q ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy6284 145 EGKWGEAIEKYNVAIQTY-PHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-NTYVKAYQRRAAARRSLNHFEDARKD 222 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~ 222 (270)
.+.++.|...|.+..... +-+...|..+-.++.+.|++++|...+++..... ..+...|..+-.+|.+.|+.++|.+.
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 345677777887766542 2366788888899999999999999999988753 33678888888999999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 223 ILKVLALEP-NNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 223 ~~~al~~~p-~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
|....+..- -+...+..+..++.+.|+..++..
T Consensus 163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYK 196 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHH
Confidence 999887643 367888899999999999877765
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.80 E-value=0.21 Score=40.50 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=57.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Q psy6284 140 NKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKA 202 (270)
Q Consensus 140 ~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a 202 (270)
..+++.|+.++|+......++.+|.|......+-..+.-.|+++.|..-++-+.+++|.....
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 456889999999999999999999999999999999999999999999999999999977543
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=95.64 E-value=0.078 Score=42.95 Aligned_cols=65 Identities=12% Similarity=0.020 Sum_probs=59.2
Q ss_pred HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy6284 175 CFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE 239 (270)
Q Consensus 175 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~ 239 (270)
-+++.+.+++|++.+...++.+|.+......+.+.++-.|+++.|.+-++.+.+++|+....-..
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~ 70 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ 70 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999998655433
No 254
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.61 E-value=0.37 Score=36.26 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=85.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~ 218 (270)
-...++-.+|+.++ |-.+. +.|..+.....++..++-.|+|..|+-.+ ..-+-..+.|..+.||..+.++..
T Consensus 9 I~Ks~kY~dYdt~~--fLsa~-L~~~~~eY~lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~klKdYkk 80 (242)
T 3kae_A 9 ICKSIRYRDYETAI--FLAAC-LLPCKPEYRMLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKKKDYKK 80 (242)
T ss_dssp HHHHHHTTCHHHHH--HHHHH-HC----CTHHHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhcccccHHH--HHHHH-HccCChHHHhhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHHHHHHH
Confidence 34557788999886 33332 45666677778889999999999887754 233457788889999999999999
Q ss_pred HHHHHHHHH--hh---------------CCCCHHH-HHHHHHHHHHhCCCCCcch---HhhhcCCC
Q psy6284 219 ARKDILKVL--AL---------------EPNNKQA-EIELAELNRKLNIPLSPIK---VDFLHNPY 263 (270)
Q Consensus 219 A~~~~~~al--~~---------------~p~~~~a-~~~l~~~~~~~~~~~~a~~---~~~~~~~~ 263 (270)
|+..++..+ +. ||.|.+- +..++.+...+|+..+++. +.+.+.|-
T Consensus 81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 999999998 33 4666654 5567888888999999988 55555553
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.22 E-value=0.26 Score=42.47 Aligned_cols=92 Identities=10% Similarity=-0.005 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCC----HHHH
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPH--D----AVFFANRALCFLKMKNYVSAEADCTASLKLD---NTY----VKAY 203 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~--~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~----~~a~ 203 (270)
..|..++..|+|.+|+..+.+.++.... + .+++.....+|..++++..+...+.++.... +.. ....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 6799999999999999999998875322 2 4578888899999999999999998887543 122 3345
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHh
Q psy6284 204 QRRAAARR-SLNHFEDARKDILKVLA 228 (270)
Q Consensus 204 ~~~g~~~~-~~g~~~~A~~~~~~al~ 228 (270)
..-|..+. ..++|.+|..+|-.+++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 55688889 89999999999999974
No 256
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.77 E-value=0.23 Score=43.27 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=77.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCH----HHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPH---DAVFFANRALCFLKMKNYVSAEADCTASLKLDN--TYV----KAYQR 205 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~----~a~~~ 205 (270)
....|..+++.|+++.|++.|.++...... -...+.....+++..+++..+...+.++-.+-. .++ .....
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 567899999999999999999999886543 257888888889999999999999999875421 222 34455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALE 230 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~ 230 (270)
.|.++...++|.+|-..|..++.--
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhChHHHHHHHHHHHhccC
Confidence 6788889999999999998887653
No 257
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.78 Score=34.67 Aligned_cols=83 Identities=7% Similarity=-0.012 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~ 210 (270)
....|+..|......|+++-|..+|.++=+ +..+..+|...|+-+.-....+.+.... + +.....++
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kla~iA~~~g-~----~n~af~~~ 99 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKMQNIAQTRE-D----FGSMLLNT 99 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHHHHHHHHTT-C----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHHHHHHHHCc-c----HHHHHHHH
Confidence 345688888888888888888888877633 3334445555666554333333332222 1 12234556
Q ss_pred HHcCCHHHHHHHHHHH
Q psy6284 211 RSLNHFEDARKDILKV 226 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~a 226 (270)
..+|+++++++.|.++
T Consensus 100 l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 100 FYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHC
Confidence 6777888887777544
No 258
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.48 E-value=0.39 Score=44.74 Aligned_cols=47 Identities=17% Similarity=0.024 Sum_probs=33.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTAS 192 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 192 (270)
.+...|++++|.+.. ...++...|..+|..+++.++++.|+.+|.++
T Consensus 661 ~~l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 661 LALKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 334556666665543 23456788889999999999999998888875
No 259
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.38 E-value=0.43 Score=40.99 Aligned_cols=61 Identities=7% Similarity=0.029 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
.....+..+...|++.+|+..+..++..+|.+..++..+-.++...|+..+|+..|+++-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456678888999999999999999999999999999999999999999999999887653
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.96 E-value=2.9 Score=36.54 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCCCH-
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY--PHD----AVFFANRALCFLKMKNYVSAEADCTASLK---LDNTYV- 200 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~--p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~- 200 (270)
.+......+..++..|+|.+|...+.....-. ..+ ...+.....+++..+++..|...++++.. -.+..+
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~ 215 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYES 215 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHH
Confidence 34455677999999999999999998876421 111 45788888889999999999999988642 223332
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 201 ---KAYQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 201 ---~a~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
..+...|..+...++|.+|-.+|..++..
T Consensus 216 lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 216 LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35566788899999999999999999864
No 261
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.25 E-value=3.5 Score=40.02 Aligned_cols=97 Identities=4% Similarity=-0.149 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQT----YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-NTYVKAYQRRAA 208 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~ 208 (270)
.+...-+.+.+.|+.++|...|.+.-+. ..-+...|+.+-..|.+.|++++|...|++..... .-+...|..+-.
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~ 208 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 4667788899999999999999764322 34567889999999999999999999999988643 247778888888
Q ss_pred HHHHcCC-HHHHHHHHHHHHhhC
Q psy6284 209 ARRSLNH-FEDARKDILKVLALE 230 (270)
Q Consensus 209 ~~~~~g~-~~~A~~~~~~al~~~ 230 (270)
++++.|+ .++|.+.|++-.+..
T Consensus 209 glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 209 CMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcHHHHHHHHHHHHHcC
Confidence 8999998 578889998877654
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.52 E-value=1.7 Score=42.87 Aligned_cols=111 Identities=16% Similarity=0.041 Sum_probs=70.4
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----------------------CC
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-----------------------DN 197 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------------------~p 197 (270)
.+...+.++.|.. .+...|.++...+.+|.+++..|++++|..+|.++-.- ..
T Consensus 821 ~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~ 896 (1139)
T 4fhn_B 821 KLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQN 896 (1139)
T ss_dssp HHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCC
T ss_pred HHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccc
Confidence 4555566655433 34566777777788888888888888888888765311 01
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHHHhCCCCCcch
Q psy6284 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEP-NNKQ----AEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~----a~~~l~~~~~~~~~~~~a~~ 255 (270)
..+..|+.....+...+.++.+++.-+.|++..+ ++.. .|..+=.....+|++.+|..
T Consensus 897 ~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 897 LLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 1223455555666677788888888888877654 3332 44555566677788777755
No 263
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=90.03 E-value=1.1 Score=41.67 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVA 158 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~a 158 (270)
...|.+.|..+.+.|+++.|+.+|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 456889999999999999999999986
No 264
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=89.88 E-value=1.1 Score=29.33 Aligned_cols=34 Identities=32% Similarity=0.204 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
-+..|..+..+|...=+.|+|++|+.+|..+++.
T Consensus 15 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456777888899999999999999999999874
No 265
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.62 E-value=4.3 Score=30.61 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=60.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHH
Q psy6284 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD--------NTYVKAYQRRAAAR 210 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a~~~~g~~~ 210 (270)
-......|+++.|.+..+.. ++...|..+|..-+..|+++-|..+|.++-..+ -.+...+-.++...
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45567889999998886553 678899999999999999999999998754322 24555566777777
Q ss_pred HHcCCHHHHHHHH
Q psy6284 211 RSLNHFEDARKDI 223 (270)
Q Consensus 211 ~~~g~~~~A~~~~ 223 (270)
...|++.-|...+
T Consensus 87 ~~~g~~n~af~~~ 99 (177)
T 3mkq_B 87 QTREDFGSMLLNT 99 (177)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCccHHHHHHHH
Confidence 7788877776554
No 266
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=89.40 E-value=1 Score=29.44 Aligned_cols=33 Identities=33% Similarity=0.202 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
+..|..+..+|...=+.|+|++|+.+|..+++.
T Consensus 8 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 8 EDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 446667888899999999999999999998874
No 267
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.96 E-value=1 Score=40.00 Aligned_cols=85 Identities=12% Similarity=0.007 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKLDN--TY---VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK------ 234 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~------ 234 (270)
..++..+-..|+..+.|++|.....++.-... .+ ...+|..|.++.-.++|.+|.++|..|++.-|.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Confidence 45677777888999999999999999852221 11 45678889999999999999999999999888653
Q ss_pred -HHHHHHHHHHHHhCCC
Q psy6284 235 -QAEIELAELNRKLNIP 250 (270)
Q Consensus 235 -~a~~~l~~~~~~~~~~ 250 (270)
.++..+..+...+|..
T Consensus 311 ~~a~K~lI~V~LLlG~i 327 (523)
T 4b4t_S 311 QQSNKLHCCIQLLMGDI 327 (523)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhHHhhcCCC
Confidence 3444445555556773
No 268
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.97 E-value=3.6 Score=40.47 Aligned_cols=114 Identities=7% Similarity=0.009 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh---C--------------------CCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQT---Y--------------------PHDAVFFANRALCFLKMKNYVSAEADCTA 191 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~---~--------------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 191 (270)
.+-+|..++..|++++|..+|.++-.- . ...+..|+....++.+.+.++.+++....
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367899999999999999999887321 0 01124566677788888999999999999
Q ss_pred HHhcCC-CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 192 SLKLDN-TYV----KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 192 al~~~p-~~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
|+...+ +.. ..|.++-..+..+|+|++|...+...-... .-......+-..+++.|.
T Consensus 925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-~r~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-LKKSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-SCHHHHHHHHHHHHHHCC
T ss_pred HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHhCCC
Confidence 998654 333 257778888999999999988875443222 224444445444555443
No 269
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.64 E-value=8.5 Score=37.10 Aligned_cols=97 Identities=20% Similarity=0.105 Sum_probs=72.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCC-------------------
Q psy6284 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK-LDN------------------- 197 (270)
Q Consensus 138 ~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p------------------- 197 (270)
....+...|.++-|.. .+...|.++-.-|.+|.+++..|++++|..+|++|-. +..
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 3566777888876543 4678899988889999999999999999999987652 111
Q ss_pred -C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHH
Q psy6284 198 -T--YVKAYQRRAAARRSLNHFEDARKDILKVLAL-EPNNKQAEI 238 (270)
Q Consensus 198 -~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~ 238 (270)
. ....|+.....+...+-++-+++..+.||.. +++++....
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~ 936 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSI 936 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchH
Confidence 1 1224556677778899999999999999974 566666443
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.15 E-value=3.8 Score=37.41 Aligned_cols=101 Identities=7% Similarity=-0.081 Sum_probs=65.5
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy6284 143 VKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222 (270)
Q Consensus 143 ~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~ 222 (270)
+..+...++...+.+......++...-...+.+ ++.+++..|...+.+.-..........|-+|.++..+|+.++|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~A-lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~ 341 (618)
T 1qsa_A 263 MGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMA-LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI 341 (618)
T ss_dssp CSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCChHHHHHHHhccccCCChHHHHHHHHHH-HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHH
Confidence 344424455566666554443333333333343 4679999999998776554445788899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 223 ILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 223 ~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
|+++.. +.+ .|-.++ ..++|..
T Consensus 342 ~~~~a~--~~~--fYg~lA--a~~Lg~~ 363 (618)
T 1qsa_A 342 LHQLMQ--QRG--FYPMVA--AQRIGEE 363 (618)
T ss_dssp HHHHHT--SCS--HHHHHH--HHHTTCC
T ss_pred HHHHhc--CCC--hHHHHH--HHHcCCC
Confidence 999875 332 233333 4456654
No 271
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=85.14 E-value=4.5 Score=26.51 Aligned_cols=48 Identities=17% Similarity=0.201 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHH-HHHHHHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD--AVFF-ANRALCFL 177 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~--~~~~-~~~a~~~~ 177 (270)
..++.+...|..+|+.++|.+|+..|+++.....+. ..++ +.++.|.-
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999998654332 2233 55666643
No 272
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=84.80 E-value=2.1 Score=28.50 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
..|..+..+|...=+.|+|++|+.+|..+++.
T Consensus 13 ~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667788889999999999999999988874
No 273
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=84.63 E-value=2 Score=28.24 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
.+..+..+|...-..|+|++|+.+|..+++.
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3456777888889999999999999998874
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.17 E-value=17 Score=30.30 Aligned_cols=95 Identities=12% Similarity=0.061 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC------------------------CCCHHHHHHHHHHHHHccC---
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAI-QTY------------------------PHDAVFFANRALCFLKMKN--- 181 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al-~~~------------------------p~~~~~~~~~a~~~~~~~~--- 181 (270)
+.-+.++...+.|.++++|++|++.+-.+- .+. |-+......+..++.....
T Consensus 33 EAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p 112 (336)
T 3lpz_A 33 EAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEP 112 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCc
Confidence 334456666777778888888877543322 221 1122233333333322221
Q ss_pred -----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 182 -----YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 182 -----~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
..+|+.+..+.=...-.++..+..+|..+..-+++.+|..+|-
T Consensus 113 ~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 113 VRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 1233444333111223678899999999999999999998873
No 275
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=84.08 E-value=2.4 Score=27.59 Aligned_cols=33 Identities=12% Similarity=0.186 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
+..|..+..+|...=..|+|++|+.+|..+++.
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666778888888999999999999998874
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.66 E-value=18 Score=30.89 Aligned_cols=85 Identities=12% Similarity=0.040 Sum_probs=58.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhc----CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHH---
Q psy6284 171 NRALCFLKMKNYVSAEADCTASLKL----DN--TYVKAYQRRAAARRSLNHFEDARKDILKVLALE---PNNKQAEI--- 238 (270)
Q Consensus 171 ~~a~~~~~~~~~~~A~~~~~~al~~----~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~--- 238 (270)
.+|..|+..|+|.+|+..+.+.+.- |. .-...+..-..+|..++++.++...+.++.... +.++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 7899999999999999988888753 21 124567777888999999999999999887653 23343332
Q ss_pred -HHHHHHH-HhCCCCCcch
Q psy6284 239 -ELAELNR-KLNIPLSPIK 255 (270)
Q Consensus 239 -~l~~~~~-~~~~~~~a~~ 255 (270)
.-|.++. ..+++..|..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~ 202 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFS 202 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHH
Confidence 2333344 4566655543
No 277
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=83.42 E-value=18 Score=29.93 Aligned_cols=103 Identities=20% Similarity=0.207 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CH----HH--------HHHHHHHHH-HccCH-----HHHHHHHH--
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPH----DA----VF--------FANRALCFL-KMKNY-----VSAEADCT-- 190 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~----~~----~~--------~~~~a~~~~-~~~~~-----~~A~~~~~-- 190 (270)
....|..++..|++++|+..|+.+|-.-|- +. ++ -|-+|.-.- ..++. +.....++
T Consensus 105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA 184 (320)
T 3mkr_B 105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA 184 (320)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence 356799999999999999999999986542 21 11 222222211 11111 22212122
Q ss_pred ---HHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy6284 191 ---ASLKLDNTYVKAYQRRAAA-RRSLNHFEDARKDILKVLALEPNNKQAE 237 (270)
Q Consensus 191 ---~al~~~p~~~~a~~~~g~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~ 237 (270)
....+.|.+...-++.|+. .++.++|..|...-++.|++.|....+-
T Consensus 185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~~~ 235 (320)
T 3mkr_B 185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEVAQ 235 (320)
T ss_dssp HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHH
Confidence 2224456555555556655 4689999999999999999998755433
No 278
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=82.77 E-value=11 Score=27.31 Aligned_cols=88 Identities=16% Similarity=0.021 Sum_probs=56.9
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy6284 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCF-LKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDI 223 (270)
Q Consensus 145 ~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~ 223 (270)
-|+...-+.+|-+. +-.+ -|.++|+-+ ..+|.-++-...+...+..++-++..++.+|.+|.++|+..+|.+.+
T Consensus 74 C~NlKrVi~C~~~~---n~~s--e~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 74 CQNLKSVVECGVIN---NTLN--EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp CSCTHHHHHHHHHT---TCCC--HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcHHHHHHHHHHh---cchH--HHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 45555555555332 1111 255566444 34566666556666656777788999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHH
Q psy6284 224 LKVLALEPNNKQAEIE 239 (270)
Q Consensus 224 ~~al~~~p~~~~a~~~ 239 (270)
.+|.+- .-++|-..
T Consensus 149 ~~AC~k--G~kEAC~~ 162 (172)
T 1wy6_A 149 IEACKK--GEKEACNA 162 (172)
T ss_dssp HHHHHT--TCHHHHHH
T ss_pred HHHHHh--hhHHHHHH
Confidence 999864 33444333
No 279
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=82.34 E-value=2.8 Score=29.26 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
+..|..+..+|...=..|+|++|+.+|..++++
T Consensus 15 l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 15 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345666777888888889999999999888764
No 280
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=81.74 E-value=4.9 Score=25.39 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=29.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF 168 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~ 168 (270)
-...|..+..+|++++|+.+|-+|+..+|+-..+
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3567999999999999999999999998876543
No 281
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=81.73 E-value=2.5 Score=39.00 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 199 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
-..+....|...+..|+|..|.+....++..+|+|.+|+..++.++.++|-..++.-
T Consensus 448 g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~~~ 504 (658)
T 2cfu_A 448 GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAENAG 504 (658)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSSHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccChH
Confidence 345677788999999999999999999999999999999999999999988766643
No 282
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=81.03 E-value=22 Score=34.66 Aligned_cols=85 Identities=7% Similarity=-0.076 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKL----DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE-PNNKQAEIELA 241 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l~ 241 (270)
..|..+-.+|.+.|+.++|...+.+.... -.-+...|..+-..+++.|++++|++.|.+-.+.. .-|...++.+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45777888999999999999999765432 24578899999999999999999999999887653 23778888888
Q ss_pred HHHHHhCCCC
Q psy6284 242 ELNRKLNIPL 251 (270)
Q Consensus 242 ~~~~~~~~~~ 251 (270)
.++++.|...
T Consensus 208 ~glcK~G~~~ 217 (1134)
T 3spa_A 208 QCMGRQDQDA 217 (1134)
T ss_dssp HHHHHHTCCH
T ss_pred HHHHhCCCcH
Confidence 8999998863
No 283
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=80.95 E-value=6.5 Score=24.84 Aligned_cols=38 Identities=11% Similarity=0.097 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy6284 205 RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242 (270)
Q Consensus 205 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~ 242 (270)
.+|..+...|++++|..+|-+|+..-|+-.+....+..
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q~ 59 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ 59 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 46888888888888888888888888877666555443
No 284
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=80.42 E-value=8.3 Score=35.20 Aligned_cols=118 Identities=7% Similarity=-0.154 Sum_probs=76.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV----FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRS 212 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~ 212 (270)
..+...+...+.+.|...+...-...+-+.. .+..+|.-+...+...++...+.++.....+....-+..+.++ .
T Consensus 219 ~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r 297 (618)
T 1qsa_A 219 AVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL-G 297 (618)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH-H
T ss_pred HHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHH-H
Confidence 3455556666889999999887654333322 2222332223334356777788777665544444444445554 6
Q ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 213 LNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 213 ~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.|+++.|...|.+.-.-.+....+.+.++.++..+|+..++..
T Consensus 298 ~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~ 340 (618)
T 1qsa_A 298 TGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKE 340 (618)
T ss_dssp HTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHH
Confidence 7999999999987655444678889999999999999766533
No 285
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=76.99 E-value=4.6 Score=37.16 Aligned_cols=51 Identities=16% Similarity=0.058 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY 182 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~ 182 (270)
+.....+|...+..|+|.-|....+.++..+|++..+...+|.+|.+++.-
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~ 499 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQ 499 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Confidence 556778888899999999999999999999999999998888888777643
No 286
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=75.55 E-value=22 Score=26.23 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=41.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--H------HHH-HHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD--A------VFF-ANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~--~------~~~-~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
-+..|..+|+.|+|-+|-+.++.+-...+.. . .+. ..-|..+...|+...|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567999999999999999998887765544 1 122 3333444556777777777777765
No 287
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=74.85 E-value=6.1 Score=26.11 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTAS 192 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~a 192 (270)
.+..+|..+++.|+|++||++..++
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 4445556666666666666655544
No 288
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=73.86 E-value=9 Score=25.31 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
|-..-.++..+.+.|.|++||++..++..
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 44556779999999999999999888765
No 289
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.63 E-value=13 Score=32.04 Aligned_cols=75 Identities=12% Similarity=0.013 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHH
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKLDN---TYVKAYQRRAAARRSLNHFEDARKDILKVLAL--EPNNKQAEIEL 240 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l 240 (270)
..++..+|..|+..|++++|...|.++..... .-...++..-.++...+++..+...+.++-.+ ...++.....+
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 45788999999999999999999999886543 34567888888899999999999999998655 23344444333
No 290
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.50 E-value=39 Score=27.81 Aligned_cols=27 Identities=4% Similarity=-0.143 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy6284 198 TYVKAYQRRAAARRSLNHFEDARKDIL 224 (270)
Q Consensus 198 ~~~~a~~~~g~~~~~~g~~~~A~~~~~ 224 (270)
.++..|..+|..+..-|++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578889999999999999999999885
No 291
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=72.10 E-value=13 Score=32.40 Aligned_cols=88 Identities=1% Similarity=-0.172 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHhhCCCC-------H---------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC----------CC
Q psy6284 146 GKWGEAIEKYNVAIQTYPHD-------A---------VFFANRALCFLKMKNYVSAEADCTASLKLDN----------TY 199 (270)
Q Consensus 146 g~~~~A~~~y~~al~~~p~~-------~---------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----------~~ 199 (270)
...++|.....++....-.+ . -.-.++-.+|++++...-|...+...-...+ .-
T Consensus 140 ~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~ 219 (455)
T 3t5v_B 140 QFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQ 219 (455)
T ss_dssp HHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccce
Confidence 35677777888887763211 0 1344566788899998887777654332221 22
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLAL-EPNN 233 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~ 233 (270)
...+|.+|..+...++|.+|.+++..|++. -|.+
T Consensus 220 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 220 IEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred EeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 457889999999999999999999999998 7755
No 292
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=71.56 E-value=4.1 Score=27.19 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA 166 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~ 166 (270)
-...|..+..+|+++.|+.+|-+||..+|+-.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~ 54 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 54 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 45679999999999999999999999887643
No 293
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=71.21 E-value=26 Score=25.43 Aligned_cols=55 Identities=16% Similarity=0.046 Sum_probs=42.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 195 (270)
.+..+|+-++--+.+...+.-.+-++..++-+|.+|.++|+..+|.+...+|.+-
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3456777777666666655656677999999999999999999999999888764
No 294
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=69.68 E-value=5.1 Score=25.69 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
.....|..+...|+|+.|+.+|+.++..
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3456688999999999999999999874
No 295
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=68.67 E-value=13 Score=28.50 Aligned_cols=33 Identities=6% Similarity=-0.088 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTY 199 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 199 (270)
..+|.+|..++..++|.+|..++..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 345556666666666666666666666655543
No 296
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=67.44 E-value=41 Score=28.95 Aligned_cols=84 Identities=8% Similarity=0.023 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy6284 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK-----LDNTYVKAYQRRAAARRSLNHFEDAR 220 (270)
Q Consensus 146 g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~a~~~~g~~~~~~g~~~~A~ 220 (270)
..|..|+-.+-..-++.|.... ..++..|.+++. ....+.-.|..+|-.+++.+++.+|+
T Consensus 259 ~~YPmALgnLgDLEei~pt~gr---------------p~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl 323 (489)
T 4gq4_A 259 ERYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREAL 323 (489)
T ss_dssp TTCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcchhhhcccCHhhcCCCCCC---------------CCHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHH
Confidence 4677777777776666665421 122334444443 23456667788899999999999999
Q ss_pred HHHHHHHh------hCCCCHHHHHHHHHHH
Q psy6284 221 KDILKVLA------LEPNNKQAEIELAELN 244 (270)
Q Consensus 221 ~~~~~al~------~~p~~~~a~~~l~~~~ 244 (270)
..+..+-. ...+|.+++..+..+.
T Consensus 324 ~~wa~aa~Vi~~YnY~reDeEiYke~~eIa 353 (489)
T 4gq4_A 324 QAWADTATVIQDYNYCREDEEIYKEFFEVA 353 (489)
T ss_dssp HHHHHHHHHHTTSCCCTTCHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhcccccchHHHHHHHHHHH
Confidence 99988754 3457888888876664
No 297
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=67.17 E-value=9.4 Score=25.44 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=22.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy6284 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240 (270)
Q Consensus 206 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 240 (270)
+|..+...|+++.|+.+|-+|+..-|.-......+
T Consensus 26 lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 26 LGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56666677777777777777777666544444433
No 298
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.64 E-value=74 Score=28.29 Aligned_cols=100 Identities=16% Similarity=0.066 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC---HH
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA-------VFFANRALCFLKMKNYVSAEADCTASLKLDNTY---VK 201 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~-------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~ 201 (270)
+..++-.|..+.-+++|.+|..++..|+...|.+. .++-.+-.|-+-+|+..+ +.+-..+.. ..
T Consensus 270 ~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~------r~lf~q~~l~~~L~ 343 (523)
T 4b4t_S 270 ARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE------LSFFHQSNMQKSLL 343 (523)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC------HHHHTTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC------hHHhhchhHHHHHH
Confidence 44556667777777777777777777777666542 122233334344555432 111122222 23
Q ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHH
Q psy6284 202 AYQRRAAARRSLNH---FEDARKDILKVLALEPNNKQAEI 238 (270)
Q Consensus 202 a~~~~g~~~~~~g~---~~~A~~~~~~al~~~p~~~~a~~ 238 (270)
.|+.++.++ +.|+ |+.+++.++..+..+-...-+..
T Consensus 344 pY~~Lv~Av-r~GdL~~F~~~L~~h~~~F~~Dgty~LI~r 382 (523)
T 4b4t_S 344 PYYHLTKAV-KLGDLKKFTSTITKYKQLLLKDDTYQLCVR 382 (523)
T ss_dssp HHHHHHHHH-HHTCHHHHHHHHHHTHHHHHHTTCTHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHhcceeccCChhHHHHH
Confidence 466666665 3343 55666667777777655554433
No 299
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.45 E-value=70 Score=27.62 Aligned_cols=66 Identities=11% Similarity=0.115 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ---TYPHD----AVFFANRALCFLKMKNYVSAEADCTASLKL 195 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~---~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 195 (270)
...+.+......++..++|..|...++++.. -.+.. ...+...|..+...++|.+|..+|..++..
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455677888899999999999999998742 23333 346777889999999999999999988854
No 300
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=64.15 E-value=30 Score=26.40 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA 166 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~ 166 (270)
+.+.-.+-.|..++.+++|.+|...+..|+...|...
T Consensus 12 q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 12 QRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4455677889999999999999999999999988764
No 301
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=61.24 E-value=29 Score=33.40 Aligned_cols=52 Identities=12% Similarity=-0.081 Sum_probs=41.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy6284 172 RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVL 227 (270)
Q Consensus 172 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 227 (270)
++..++..+.++-|. ..+..-|.++..-|.+|.++...|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 444555677776543 4567778888888999999999999999999999774
No 302
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=64.84 E-value=1.8 Score=39.97 Aligned_cols=55 Identities=16% Similarity=0.068 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCcch
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIK 255 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a~~ 255 (270)
.+...+|...+..|+|..|.+..+.++..+|+|.+|+..++.++.++|-..++.-
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~~~ 516 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTENAL 516 (668)
Confidence 3566678888899999999999999999999999999999999999998766543
No 303
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=57.20 E-value=83 Score=26.63 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHH
Q psy6284 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLAL------EPNNKQAEIELAELN 244 (270)
Q Consensus 197 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~l~~~~ 244 (270)
-.+.-.|..+|-.+++.+++.+|+..+..+-.. ..+|.+++.++-.+-
T Consensus 293 n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eIA 346 (472)
T 3re2_A 293 DHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYSKDDEEMYKEFHEIA 346 (472)
T ss_dssp TCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHHH
T ss_pred cCCccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHH
Confidence 356667788888899999999999988877542 346777777766653
No 304
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.39 E-value=46 Score=22.97 Aligned_cols=33 Identities=21% Similarity=0.149 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
....|..+.+.|...=..|+-++|+.+|+++|.
T Consensus 18 ~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~ 50 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIG 50 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 344556666666666666666666666666654
No 305
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=55.64 E-value=72 Score=24.90 Aligned_cols=61 Identities=11% Similarity=-0.104 Sum_probs=31.8
Q ss_pred HHHHHHHHH-----HHcCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHH-HccCHHHHHHHHHHHHh
Q psy6284 134 YSKEQGNKL-----VKEGKWGEAIEKYNVAIQT-----YPHD---AVFFANRALCFL-KMKNYVSAEADCTASLK 194 (270)
Q Consensus 134 ~~~~~g~~~-----~~~g~~~~A~~~y~~al~~-----~p~~---~~~~~~~a~~~~-~~~~~~~A~~~~~~al~ 194 (270)
.++.+|..+ |..|+-+.|...|+.|+++ .|.+ ..+.+|.+..|+ -+++.++|+....+++.
T Consensus 122 Y~KMKGDYyRYlAE~~~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 122 KLKVKSDISRYKLEFGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHccccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555444 3455666666677766653 2222 234444444443 34566666666665554
No 306
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=55.57 E-value=78 Score=27.86 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=12.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q psy6284 207 AAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~ 228 (270)
|--.+..|..++|...-++|=+
T Consensus 494 AA~k~~yG~~eqAe~l~~~A~~ 515 (526)
T 2wb7_A 494 AARKALNGDLEQAKIDAEKAKE 515 (526)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccHHHHHHHHHHHH
Confidence 3334556777777666655543
No 307
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=55.24 E-value=89 Score=25.85 Aligned_cols=118 Identities=18% Similarity=0.027 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------HHH--------HHHHHHHHHHc-------cCHHHHHH--HH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD--------AVF--------FANRALCFLKM-------KNYVSAEA--DC 189 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~--------~~~--------~~~~a~~~~~~-------~~~~~A~~--~~ 189 (270)
....|..++..|++++|+..|+.+|-.-|-. .++ -|-+|.-. .+ .+....++ .|
T Consensus 117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~i-El~Rr~l~~~~~kR~lELAAY 195 (325)
T 3mv2_A 117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSI-ELERRSLKEGNTVRMLELAAY 195 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHH-HHHHHTCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCcccHHHHHHHHHH
Confidence 4557999999999999999999998764311 111 22222211 11 11111111 11
Q ss_pred HHHHhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCCCCc
Q psy6284 190 TASLKLDNTYVKAYQRRAAA-RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP 253 (270)
Q Consensus 190 ~~al~~~p~~~~a~~~~g~~-~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~~~a 253 (270)
-....+.|.+...-++.|+. .++.++|..|....++.|+++|....+-.....+..-..+...+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~Da 260 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASDA 260 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCCS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
Confidence 12224455555555555555 46899999999999999999998776555444433333344333
No 308
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=54.71 E-value=43 Score=22.06 Aligned_cols=57 Identities=14% Similarity=0.034 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA------VFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
+..|..+|+.|+|-+|-+.++..-...|... .+...-|..+...|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3458888889999999888888777664421 1222233333344554 5555655554
No 309
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=54.30 E-value=20 Score=23.15 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=8.7
Q ss_pred HHHcCCHHHHHHHHHHHH
Q psy6284 210 RRSLNHFEDARKDILKVL 227 (270)
Q Consensus 210 ~~~~g~~~~A~~~~~~al 227 (270)
.-..|++++|+..|..++
T Consensus 29 ~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 29 ADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHH
Confidence 344555555555444443
No 310
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=51.72 E-value=23 Score=22.80 Aligned_cols=17 Identities=18% Similarity=0.315 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhCCCCH
Q psy6284 218 DARKDILKVLALEPNNK 234 (270)
Q Consensus 218 ~A~~~~~~al~~~p~~~ 234 (270)
+|++.|..+++..|+..
T Consensus 36 ~aie~l~~~lk~e~d~~ 52 (83)
T 2v6y_A 36 KAIEVLSQIIVLYPESV 52 (83)
T ss_dssp HHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHCCCHH
Confidence 34445555555555443
No 311
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=56.54 E-value=3.2 Score=38.32 Aligned_cols=55 Identities=15% Similarity=0.027 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHH
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVS 184 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~ 184 (270)
.-+.....++..++..|+|.-|....+.++..+|++..+...+|.+|.++|.-.+
T Consensus 459 Gg~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 459 GGADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 3356677889999999999999999999999999999999999999988876554
No 312
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=51.09 E-value=45 Score=28.88 Aligned_cols=29 Identities=10% Similarity=-0.173 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
..|+-.+|.+|..+|++++|.+..++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 34555566666666666666666666664
No 313
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=49.47 E-value=69 Score=27.89 Aligned_cols=65 Identities=8% Similarity=-0.091 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC--C--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCC
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYP--H--------DAVFFANRALCFLKMKNYVSAEADCTASLKL-DNTY 199 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p--~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~ 199 (270)
....-..||+.++...+-..++..-...+ . -+..+|.+|..++..++|.+|.+++..|+.. .|..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34455778999998888777754332221 1 1468899999999999999999999999998 7654
No 314
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=48.86 E-value=1.3e+02 Score=26.11 Aligned_cols=89 Identities=10% Similarity=0.031 Sum_probs=54.1
Q ss_pred HHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHH
Q psy6284 140 NKLVKEG---KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK-----LDNTYVKAYQRRAAARR 211 (270)
Q Consensus 140 ~~~~~~g---~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-----~~p~~~~a~~~~g~~~~ 211 (270)
..++..| .|..|+-.+-..-++.|..... .++..|.+++. ..-.+.-.|..+|-.++
T Consensus 265 WlLyd~GhL~rYPmALgnLgDLEe~~pt~gr~---------------~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~y 329 (550)
T 3u84_A 265 WLLYDLGHLERYPMALGNLADLEELEPTPGRP---------------DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHC 329 (550)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHSCCTTCC---------------CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHH
T ss_pred HHHHhccchhhCchhhcchhhHhhcCCCCCCC---------------CHHHHHHHHHHHHHHHhccCCccceeecchhhh
Confidence 3444444 5666766666666665543210 13333333332 23356667778888899
Q ss_pred HcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHH
Q psy6284 212 SLNHFEDARKDILKVLAL------EPNNKQAEIELAEL 243 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~~------~p~~~~a~~~l~~~ 243 (270)
+.+++.+|+..+..+-.. ..+|.+++.++-.+
T Consensus 330 R~~~~reAl~~WA~Aa~Vi~~YNY~reDeEIYKEf~eI 367 (550)
T 3u84_A 330 RNRNVREALQAWADTATVIQDYNYCREDEEIYKEFFEV 367 (550)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTSCCCGGGHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHH
Confidence 999999999888876542 34677777776655
No 315
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=48.70 E-value=18 Score=23.12 Aligned_cols=26 Identities=19% Similarity=0.114 Sum_probs=19.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 203 YQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 203 ~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
...+|.=+..+|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 34567777788888888888887764
No 316
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=47.70 E-value=51 Score=28.61 Aligned_cols=29 Identities=7% Similarity=-0.067 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
..|+-.+|.+|+..|++++|.+..++++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44566666777767777777777776664
No 317
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=47.11 E-value=48 Score=21.52 Aligned_cols=33 Identities=12% Similarity=-0.017 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284 126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA 158 (270)
Q Consensus 126 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~a 158 (270)
.+-++.|..+.+.|..+++.||+..|+.++.=+
T Consensus 29 ~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 61 (86)
T 2oo2_A 29 EGFMRNIEAYISDSRYFLEKGDLVRAFECVVWA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667788999999999999999998886544
No 318
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=46.31 E-value=31 Score=22.36 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=11.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q psy6284 207 AAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~ 228 (270)
|.-.-..|++++|+..|..+++
T Consensus 23 Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3333455666665555555543
No 319
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=46.25 E-value=50 Score=21.49 Aligned_cols=32 Identities=9% Similarity=0.100 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy6284 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA 158 (270)
Q Consensus 127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~a 158 (270)
+-++.|..+.+.|..+++.||+..|+.++.=+
T Consensus 34 ~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 34 AVVERALNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566778888888888888888888776443
No 320
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=45.53 E-value=59 Score=28.50 Aligned_cols=27 Identities=22% Similarity=0.090 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 202 AYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 202 a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
|+-.+|.+|+.++++++|....++++.
T Consensus 205 A~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 205 VLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444445555555555555555555544
No 321
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=45.16 E-value=65 Score=21.67 Aligned_cols=38 Identities=13% Similarity=-0.025 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 123 EEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 123 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
+..+.....|+...-.+....+.|+|++|.....++-+
T Consensus 9 m~iI~~aG~Ars~~~eAl~~Ak~g~fe~A~~~l~eA~~ 46 (103)
T 1wcr_A 9 MGLIINSGQARSLAYAALKQAKQGDFAAAKAMMDQSRM 46 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445567788888889999999999999999888754
No 322
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=44.84 E-value=68 Score=21.83 Aligned_cols=39 Identities=21% Similarity=0.050 Sum_probs=31.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 122 EEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 122 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
.+..+.....|+...-.+....+.|+|++|...+.++-+
T Consensus 12 ~m~iI~~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~eA~~ 50 (109)
T 3k1s_A 12 PFQLILNSGNARSFAMEALQFAKQGKMAEADEAMVKAKE 50 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556667788888899999999999999999888754
No 323
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=44.63 E-value=67 Score=21.71 Aligned_cols=38 Identities=16% Similarity=-0.042 Sum_probs=30.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 123 EEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 123 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
+..+.....|+...-.+....+.|+|++|.....++-+
T Consensus 11 m~iI~~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 11 FEIVAYAGDARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34445567788888889999999999999999888754
No 324
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=44.55 E-value=54 Score=28.52 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 168 FFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 168 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
++..+|.+|+.++++++|+..+++++.
T Consensus 204 a~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 204 AQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 455555555555555555555555553
No 325
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.94 E-value=93 Score=22.81 Aligned_cols=59 Identities=5% Similarity=-0.033 Sum_probs=43.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCCCC------HHHHHH-HHH--HHHHcCCHHHHHHHHHHHHh
Q psy6284 170 ANRALCFLKMKNYVSAEADCTASLKLDNTY------VKAYQR-RAA--ARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 170 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~a~~~-~g~--~~~~~g~~~~A~~~~~~al~ 228 (270)
+..|..++..|+|-+|=+.++.+-...+.. ..++.. +|. .+...|+...|...+.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445667778899999999998888776544 234444 333 34568999999999999977
No 326
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=43.07 E-value=36 Score=22.38 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhCCCCH
Q psy6284 218 DARKDILKVLALEPNNK 234 (270)
Q Consensus 218 ~A~~~~~~al~~~p~~~ 234 (270)
.|++.|..+++..|+..
T Consensus 40 ~Aie~l~~alk~e~~~~ 56 (93)
T 1wfd_A 40 EGIDMLLQVLKGTKESS 56 (93)
T ss_dssp HHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHCCCHH
Confidence 34444555555555433
No 327
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=42.72 E-value=0.077 Score=46.93 Aligned_cols=98 Identities=19% Similarity=0.218 Sum_probs=66.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH-----------
Q psy6284 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR----------- 205 (270)
Q Consensus 137 ~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~----------- 205 (270)
.-|..+|..|.|+.|.-.|... ++ |..+|.|+.++++|.+|+++.+||- +++.|-.
T Consensus 149 ~VGDrcf~e~lYeAAKilys~i----sN----~akLAstLV~L~~yq~AVdaArKAn-----s~ktWKeV~~ACvd~~Ef 215 (624)
T 3lvg_A 149 QVGDRCYDEKMYDAAKLLYNNV----SN----FGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDGKEF 215 (624)
T ss_dssp HHHHHHHHSCCSTTSSTTGGGS----CC----CTTTSSSSSSCSGGGSSTTTTTTCC-----SSCSHHHHTHHHHHSCTT
T ss_pred HHHHHHHHccCHHHHHHHHHhC----cc----HHHHHHHHHHHHHHHHHHHHHHhcC-----ChhHHHHHHHHHhCchHH
Confidence 3499999999999998777432 11 3346666666666666655444321 1111111
Q ss_pred -------------------HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy6284 206 -------------------RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247 (270)
Q Consensus 206 -------------------~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 247 (270)
+-..|...|-|++=+..++.++-++..+--....|+.++.+-
T Consensus 216 rLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 216 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS
T ss_pred HHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc
Confidence 222345667788889999999999999999999999998754
No 328
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=42.32 E-value=45 Score=24.04 Aligned_cols=35 Identities=23% Similarity=0.140 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 127 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
..+..+..+...|..|...|+++.|...|.+.+.+
T Consensus 35 ~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L 69 (146)
T 2xze_A 35 RYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITL 69 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999997654
No 329
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=41.78 E-value=10 Score=26.78 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=12.3
Q ss_pred ccceEEEEecCCCC
Q psy6284 13 FARIWHIYDAKWQN 26 (270)
Q Consensus 13 ~~~~~~~~d~~~~~ 26 (270)
-+|.|.|.|++|++
T Consensus 48 ~sRhW~Itd~~g~~ 61 (127)
T 2f1e_A 48 VARHWQITDGNGRT 61 (127)
T ss_dssp EEEEEEEEETTSCE
T ss_pred EeceEEEEeCCCCE
Confidence 38999999999875
No 330
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=41.10 E-value=11 Score=26.60 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=12.2
Q ss_pred ccceEEEEecCCCC
Q psy6284 13 FARIWHIYDAKWQN 26 (270)
Q Consensus 13 ~~~~~~~~d~~~~~ 26 (270)
-+|.|.|.|++|++
T Consensus 47 ~sRhW~Itd~~g~~ 60 (126)
T 1xvs_A 47 MSRRWLITDADGKQ 60 (126)
T ss_dssp EEEEEEEEETTCCE
T ss_pred EecEEEEEeCCCCE
Confidence 38999999999875
No 331
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=40.37 E-value=54 Score=20.93 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=8.7
Q ss_pred HHcCCHHHHHHHHHHHHh
Q psy6284 211 RSLNHFEDARKDILKVLA 228 (270)
Q Consensus 211 ~~~g~~~~A~~~~~~al~ 228 (270)
-..|++++|+..|..+++
T Consensus 24 D~~g~y~eAl~~Y~~aie 41 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLD 41 (85)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 344555555555444443
No 332
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=39.62 E-value=1.1e+02 Score=23.93 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=19.9
Q ss_pred HHHHHHHHHHh-----hCCCCHH---HHHHHHHHHHH-ccCHHHHHHHHHHHH
Q psy6284 150 EAIEKYNVAIQ-----TYPHDAV---FFANRALCFLK-MKNYVSAEADCTASL 193 (270)
Q Consensus 150 ~A~~~y~~al~-----~~p~~~~---~~~~~a~~~~~-~~~~~~A~~~~~~al 193 (270)
.|...|+.|++ +.|.+|. +.+|.+..|+. +++.++|+....+++
T Consensus 148 ~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 148 NSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555555553 2344432 23333333333 455555555554444
No 333
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=39.49 E-value=80 Score=21.92 Aligned_cols=38 Identities=16% Similarity=-0.026 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 123 EEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 123 ~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
+..+.....|+...-.+....+.|+|++|...+.++-+
T Consensus 28 m~II~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~eA~e 65 (120)
T 3l8r_A 28 FEIILNSGNARSIVHEAFDAMREKNYILAEQKLQEAND 65 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445567788888889999999999999999888754
No 334
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=39.48 E-value=56 Score=19.03 Aligned_cols=37 Identities=8% Similarity=0.003 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 125 DLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 125 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
..+.+..|+.+-..+.....-.|...|++.++++|++
T Consensus 13 ~~~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~l 49 (53)
T 2rkl_A 13 RASKIEQIQKLAKYAISALNYEDLPTAKDELTKALDL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH
Confidence 3456677777888888888899999999999999875
No 335
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=37.60 E-value=1.1e+02 Score=24.43 Aligned_cols=45 Identities=13% Similarity=0.188 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhh----CCCCHH---HHHHHHHHHHH-ccCHHHHHHHHHHHH
Q psy6284 149 GEAIEKYNVAIQT----YPHDAV---FFANRALCFLK-MKNYVSAEADCTASL 193 (270)
Q Consensus 149 ~~A~~~y~~al~~----~p~~~~---~~~~~a~~~~~-~~~~~~A~~~~~~al 193 (270)
+.|...|+.|+++ .|.+|. +.+|.+..|+. +++.++|+....+++
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAF 225 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455556666543 333332 23333333333 556666555555544
No 336
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=37.55 E-value=52 Score=22.68 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhCCCCHH
Q psy6284 218 DARKDILKVLALEPNNKQ 235 (270)
Q Consensus 218 ~A~~~~~~al~~~p~~~~ 235 (270)
.|++.|..+++..+.+..
T Consensus 43 ~Aie~l~~alk~e~~~~~ 60 (117)
T 2cpt_A 43 HAVQYFLHVVKYEAQGDK 60 (117)
T ss_dssp HHHHHHHHHHHTSCCCHH
T ss_pred HHHHHHHHHHHhccCCHH
Confidence 344444455555545544
No 337
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=36.94 E-value=14 Score=26.43 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=12.3
Q ss_pred ccceEEEEecCCCC
Q psy6284 13 FARIWHIYDAKWQN 26 (270)
Q Consensus 13 ~~~~~~~~d~~~~~ 26 (270)
-+|.|.|.|++|++
T Consensus 47 ~sRhW~Itd~~g~~ 60 (134)
T 1tza_A 47 ETRHWIITDANGKT 60 (134)
T ss_dssp EEEEEEEEETTSCE
T ss_pred EecEEEEEeCCCCE
Confidence 38999999999875
No 338
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=36.73 E-value=83 Score=26.64 Aligned_cols=44 Identities=20% Similarity=0.158 Sum_probs=32.3
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 151 AIEKYNVAIQT-----YPHDAVFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 151 A~~~y~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
++..|.+|+.. .....-.|..+|-++++.+++.+|+..+..+-.
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~ 324 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGY 324 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHH
Confidence 56666666653 233455788899999999999999998876653
No 339
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=36.43 E-value=75 Score=22.81 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHH
Q psy6284 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT---YPHDAVFF 169 (270)
Q Consensus 128 ~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~---~p~~~~~~ 169 (270)
....|..++..|..+...||.+.|-..|.+.+.+ -|.+++..
T Consensus 38 y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpdyk 82 (144)
T 2a9u_A 38 YVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFK 82 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 4567888999999999999999999999987654 35555443
No 340
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=36.07 E-value=1e+02 Score=27.04 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 148 WGEAIEKYNVAIQTYPHD-----------AVFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 148 ~~~A~~~y~~al~~~p~~-----------~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
|+..+..++.|+...|.. ..++..+|.+|+.++++++|+..+++++.
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 445566677777766532 35788899999999999999999998884
No 341
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=35.30 E-value=85 Score=27.08 Aligned_cols=47 Identities=17% Similarity=0.044 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 148 WGEAIEKYNVAIQTYPHD--------AVFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 148 ~~~A~~~y~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
|+..+..++.|+...|.. ..++..+|.+|+.++++++|+..+++++.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 456666677777776643 35788889999999999999999988884
No 342
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=34.66 E-value=1e+02 Score=26.65 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 148 WGEAIEKYNVAIQTYPHD--------AVFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 148 ~~~A~~~y~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
|+.-+..++.|+...|.. ..++..+|.+|+.++++++|+..+++++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 455666677777766643 35788899999999999999999998884
No 343
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=34.59 E-value=1.1e+02 Score=27.03 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 201 KAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 201 ~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
.|+-.+|.+++..+++++|.+..++++.
T Consensus 183 aA~allarv~L~~~~~~~A~~~a~~vi~ 210 (517)
T 3qnk_A 183 AAYALKSRVELYDKRYEDVIKSCAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666666666654
No 344
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=34.46 E-value=1.9e+02 Score=28.99 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=46.3
Q ss_pred HHHHHHH-hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCC
Q psy6284 187 ADCTASL-KLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249 (270)
Q Consensus 187 ~~~~~al-~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 249 (270)
+.|.+++ +.++.+.++......-....++|-.|++.+.++++-.| ..+.+..+..+...+|.
T Consensus 1270 ~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~-~~~~~~~~~~~~~~l~w 1332 (1354)
T 3lxu_X 1270 ELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKR-TRDHFVELAAINGALGH 1332 (1354)
T ss_dssp HHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHcCC
Confidence 3444444 35667777665555555579999999999999999886 66788888888888876
No 345
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=34.38 E-value=64 Score=22.71 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 131 ~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
.++.+.+.|..++..||.-+|-+.|-+|.+
T Consensus 6 lAe~yL~EA~ell~kGD~vQAsEK~ykAae 35 (129)
T 2jpu_A 6 SAEVYYEEAEEFLSKGDLVQACEKYYKAAE 35 (129)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 466788999999999999999999888876
No 346
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=34.37 E-value=1.5e+02 Score=23.63 Aligned_cols=14 Identities=14% Similarity=-0.064 Sum_probs=6.4
Q ss_pred ccCHHHHHHHHHHH
Q psy6284 179 MKNYVSAEADCTAS 192 (270)
Q Consensus 179 ~~~~~~A~~~~~~a 192 (270)
+++.++|+....+|
T Consensus 212 ln~p~~Ac~LAk~A 225 (261)
T 3ubw_A 212 LNSPDRACRLAKAA 225 (261)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 34555544444433
No 347
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=34.32 E-value=1.5e+02 Score=23.41 Aligned_cols=45 Identities=11% Similarity=0.140 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHh-----hCCCCHH---HHHHHHHHHHH-ccCHHHHHHHHHHHH
Q psy6284 149 GEAIEKYNVAIQ-----TYPHDAV---FFANRALCFLK-MKNYVSAEADCTASL 193 (270)
Q Consensus 149 ~~A~~~y~~al~-----~~p~~~~---~~~~~a~~~~~-~~~~~~A~~~~~~al 193 (270)
+.|...|+.|++ +.|.+|. +.+|.+..|+. +++.++|+....+++
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666666654 3455542 33344444333 566777666655554
No 348
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=34.19 E-value=1.5e+02 Score=23.64 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHh-----hCCCCHH---HHHHHHHHHHH-ccCHHHHHHHHHHHH
Q psy6284 149 GEAIEKYNVAIQ-----TYPHDAV---FFANRALCFLK-MKNYVSAEADCTASL 193 (270)
Q Consensus 149 ~~A~~~y~~al~-----~~p~~~~---~~~~~a~~~~~-~~~~~~A~~~~~~al 193 (270)
+.|...|+.|++ +.|.+|. +.+|.+..|+. +++.++|+....+++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 456666777765 3455542 34444444443 577777777666655
No 349
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=33.79 E-value=15 Score=26.44 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=12.2
Q ss_pred ccceEEEEecCCCC
Q psy6284 13 FARIWHIYDAKWQN 26 (270)
Q Consensus 13 ~~~~~~~~d~~~~~ 26 (270)
-+|.|.|.|++|++
T Consensus 52 ~sRhW~ItD~~G~~ 65 (139)
T 1xq4_A 52 ISRHWIITDGEERV 65 (139)
T ss_dssp EEEEEEEECTTSCE
T ss_pred EecEEEEEeCCCCE
Confidence 38999999999875
No 350
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=33.47 E-value=1.4e+02 Score=21.83 Aligned_cols=84 Identities=12% Similarity=0.050 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccCHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy6284 135 SKEQGNKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVS-AEADCTASLKLDNTYVKAYQRRAAARR 211 (270)
Q Consensus 135 ~~~~g~~~~~~g~~~~A~~~y~~al~~~p~--~~~~~~~~a~~~~~~~~~~~-A~~~~~~al~~~p~~~~a~~~~g~~~~ 211 (270)
....++..|-..+|...+..+.. .+|. .....|.+|..|.....+.. .....-..+.+.. + .-+.+=.++.
T Consensus 11 a~i~a~~afl~~dYs~VI~~L~~---~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQKenIln~itlkS-d--e~yL~YWIyi 84 (161)
T 2ynq_A 11 AYIQSTELFLQNKYSDVITTLED---YAPEDMPYVIQYELASSYVMTESLTEEQRQTVSNNITLKT-D--EQYMLYWIYI 84 (161)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTT---SCGGGSCHHHHHHHHHHHHHTSSSCHHHHHHHHHTCCTTS-C--HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHhc---CChhhCChhHHHHHHHHHHHccCCCHHHHHHHHhhCCccC-C--HHHHHHHHHH
Confidence 34458889999999998887643 3443 35688999999999877653 2333322233322 1 2233456788
Q ss_pred HcCCHHHHHHHHH
Q psy6284 212 SLNHFEDARKDIL 224 (270)
Q Consensus 212 ~~g~~~~A~~~~~ 224 (270)
..|++++|+..-.
T Consensus 85 GRg~~~eAlDiA~ 97 (161)
T 2ynq_A 85 GRSQSEEALELAR 97 (161)
T ss_dssp HHTCHHHHHHHHH
T ss_pred cCCchHHHHHHHH
Confidence 8999999987644
No 351
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=33.37 E-value=98 Score=26.76 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 150 EAIEKYNVAIQT-----YPHDAVFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 150 ~A~~~y~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
.++..|.+|+.. ...+.-.|..+|-++++.+++.+|+..+..+-.
T Consensus 297 ~~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~ 346 (550)
T 3u84_A 297 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 346 (550)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHH
Confidence 467888888874 345566788899999999999999988766553
No 352
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=33.21 E-value=9 Score=30.65 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
..|..+..+|..+=+.|+|++|+.+|..++++
T Consensus 21 ~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~ 52 (257)
T 2ymb_A 21 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 52 (257)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556777788888999999999999999875
No 353
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=32.30 E-value=16 Score=17.58 Aligned_cols=15 Identities=33% Similarity=0.235 Sum_probs=12.5
Q ss_pred EEEEecCCCCchhhH
Q psy6284 17 WHIYDAKWQNPIESA 31 (270)
Q Consensus 17 ~~~~d~~~~~~~~~~ 31 (270)
=.|+|.+|+.+..++
T Consensus 7 s~IYD~~g~~i~~lg 21 (26)
T 2v2f_A 7 SKIYDNKNQLIADLG 21 (26)
T ss_pred CEEEeCCCCEeeecc
Confidence 479999999988875
No 354
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=31.95 E-value=53 Score=21.48 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh
Q psy6284 130 ASAVYSKEQGNKLVKE---GKWGEAIEKYNVAIQ 160 (270)
Q Consensus 130 ~~a~~~~~~g~~~~~~---g~~~~A~~~y~~al~ 160 (270)
..|..+.+.|...=.. |+-++|+.+|++++.
T Consensus 14 ~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~ 47 (89)
T 3eab_A 14 KQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIE 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHH
Confidence 3444455555554444 555555555555543
No 355
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.31 E-value=1.2e+02 Score=26.34 Aligned_cols=29 Identities=17% Similarity=0.048 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284 167 VFFANRALCFLKMKNYVSAEADCTASLKL 195 (270)
Q Consensus 167 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 195 (270)
.++..+|.+|+..+++++|+..+++++..
T Consensus 198 aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 198 SAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 47777888888888888888888888854
No 356
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=30.34 E-value=1.3e+02 Score=21.00 Aligned_cols=53 Identities=11% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHHHHHcCCHHHHHHHHHHH---HhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 139 GNKLVKEGKWGEAIEKYNVA---IQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 139 g~~~~~~g~~~~A~~~y~~a---l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
...+|..++.+..+..+... ++..|.. ....+....--.++.+|.++|++...
T Consensus 47 Srlyf~~~n~~~m~~~L~pLh~~l~~~PeT---~~E~sF~~~fG~~L~~A~~~~~~y~~ 102 (126)
T 2npu_A 47 SRLYFGERNVKGMFEVLEPLHAMMERGPQT---LKETSFNQAYGRDLMEAQEWCRKYMK 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCHHHHHHHHHHHHHHHccCCCC---HHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55667999999999888665 3445554 33333443344567788888877654
No 357
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=30.29 E-value=1e+02 Score=26.71 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy6284 182 YVSAEADCTASLKLDN--------TYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230 (270)
Q Consensus 182 ~~~A~~~~~~al~~~p--------~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~ 230 (270)
++..+.+++.|+.+-| +...|+-.+|.+|+..|++++|.+..++++...
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 3556666776665543 334578889999999999999999999998753
No 358
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=29.37 E-value=1.2e+02 Score=26.09 Aligned_cols=45 Identities=11% Similarity=0.068 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q psy6284 150 EAIEKYNVAIQT-----YPHDAVFFANRALCFLKMKNYVSAEADCTASLK 194 (270)
Q Consensus 150 ~A~~~y~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 194 (270)
.++..|++|+.. .....-.|..+|-++.+.++|.+|+..+..+-.
T Consensus 282 ~~~~Lf~~AI~~ar~~Y~~~hvYPYtYlgG~~~R~~~~~eAl~~wa~aa~ 331 (489)
T 4gq4_A 282 DPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTAT 331 (489)
T ss_dssp CHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCcccceeecchHHHHhhhHHHHHHHhhhhhh
Confidence 467788888874 445567788899999999999999999887753
No 359
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=27.31 E-value=92 Score=27.14 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q psy6284 149 GEAIEKYNVAIQTYPHD--------AVFFANRALCFLKMKNYVSAEADCTASL 193 (270)
Q Consensus 149 ~~A~~~y~~al~~~p~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~al 193 (270)
+.-+..++.|+...|.. ..++..+|.+|+.++++++|+..+++++
T Consensus 155 ~~I~~DL~~A~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~A~~~a~~vi 207 (481)
T 3jq1_A 155 AQAKEDLKTAASLLPITNKIGKPTQGAAYAALGKIYVYEENWQEAINVLEPLT 207 (481)
T ss_dssp HHHHHHHHHHHHHSCSSCSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444455555544421 2355666666666666666666666665
No 360
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=27.29 E-value=1.6e+02 Score=20.47 Aligned_cols=32 Identities=16% Similarity=0.078 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~ 160 (270)
.+.|......+...+..|.|..|.-...+|++
T Consensus 13 ~~~A~~dL~~A~~~l~~g~y~~a~F~aqQA~E 44 (135)
T 1o3u_A 13 MDAAKDDLEHAKHDLEHGFYNWACFSSQQAAE 44 (135)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 45677778888888999999988877777765
No 361
>2ca5_A MXIH; transport protein, type III secretion system, needle complex, protein transport, virulence; 2.10A {Shigella flexneri} SCOP: a.2.20.1 PDB: 2v6l_0 3j0r_A
Probab=26.92 E-value=89 Score=20.09 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy6284 218 DARKDILKVLALEPNNKQAEIELAEL 243 (270)
Q Consensus 218 ~A~~~~~~al~~~p~~~~a~~~l~~~ 243 (270)
+++..-.++|+-+|+|+.+...+...
T Consensus 28 ~~v~~Ai~~L~~~PsnPa~LAeyQ~k 53 (85)
T 2ca5_A 28 GELTLALDKLAKNPSNPQLLAEYQSK 53 (85)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34444444455566666655555443
No 362
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=26.38 E-value=2.2e+02 Score=21.73 Aligned_cols=66 Identities=9% Similarity=-0.012 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKLD--NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
..+|...+.++ ..+...++...|.-+.... -..+..|-..|..+...|++.+|.+.|+.+++.+-.
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 34555555443 1233668888887777544 466777778888899999999999999999997643
No 363
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.37 E-value=2.9e+02 Score=23.21 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=59.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC-------C--------CC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhc-------C
Q psy6284 141 KLVKEGKWGEAIEKYNVAIQTY-------P--------HD--AVFFANRALCFLKMKNYVSAEADCTASLKL-------D 196 (270)
Q Consensus 141 ~~~~~g~~~~A~~~y~~al~~~-------p--------~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~ 196 (270)
..-...+.++|+....+..... . .. ..+....+..|+..++..+|....+++-.. +
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 3345678899998887654321 0 12 235556777888899999999888887632 2
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 197 NT-YVKAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 197 p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
|. +...|...+..+...+++..+..++-..+.
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 21 234455567777889999998888777765
No 364
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=26.31 E-value=52 Score=17.28 Aligned_cols=14 Identities=14% Similarity=0.216 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhh
Q psy6284 216 FEDARKDILKVLAL 229 (270)
Q Consensus 216 ~~~A~~~~~~al~~ 229 (270)
|++|+..|+.+++.
T Consensus 18 yDKAVaSfk~alk~ 31 (37)
T 3s6n_M 18 YDKAVASFKHALKN 31 (37)
T ss_pred HHHHHHHHHHHHhc
Confidence 56666666666654
No 365
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=24.43 E-value=2.5e+02 Score=21.81 Aligned_cols=72 Identities=8% Similarity=0.001 Sum_probs=46.4
Q ss_pred ccCHHHHHHHHHHHHhc-----CCCC---HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHH
Q psy6284 179 MKNYVSAEADCTASLKL-----DNTY---VKAYQRRAAARR-SLNHFEDARKDILKVLAL------EPNNKQAEIELAEL 243 (270)
Q Consensus 179 ~~~~~~A~~~~~~al~~-----~p~~---~~a~~~~g~~~~-~~g~~~~A~~~~~~al~~------~p~~~~a~~~l~~~ 243 (270)
.|+.+.|...|+.|+.+ .|.+ ....++.+..|+ -+++.++|...-++++.. ++++-.-...+..+
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~~~~~~E~m~~~~~~~~~ 217 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQENMDRKAQITVY 217 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 45567888888888753 3444 344555555554 599999999999999765 56665555555555
Q ss_pred HHHhCCC
Q psy6284 244 NRKLNIP 250 (270)
Q Consensus 244 ~~~~~~~ 250 (270)
...+++.
T Consensus 218 ~q~~~d~ 224 (227)
T 2o8p_A 218 LQGIKDY 224 (227)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 5555544
No 366
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=24.35 E-value=1.2e+02 Score=23.53 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCCHH----HHHHHHHHHHHc--cC--------------HHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEK--YNVAIQTYPHDAV----FFANRALCFLKM--KN--------------YVSAEADCTA 191 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~--y~~al~~~p~~~~----~~~~~a~~~~~~--~~--------------~~~A~~~~~~ 191 (270)
-+...+..+|+.+++.+-... ..+++-..|-... -....+.|+.+. |+ ++.|+..++.
T Consensus 18 fyf~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~~~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~~ 97 (235)
T 3bu8_A 18 FYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTVSRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLEM 97 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhCcccccccchhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHHH
Confidence 466778888998887763322 1222323554433 223344444432 11 4557777666
Q ss_pred HHhcCCCCHH-------HHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy6284 192 SLKLDNTYVK-------AYQRRA-AARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246 (270)
Q Consensus 192 al~~~p~~~~-------a~~~~g-~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 246 (270)
.-.-.+-... ..--.| .++.+.|.|++|.+.+++.+.-+|.+......|..+-.+
T Consensus 98 I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 98 IKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhc
Confidence 5554432211 111123 335679999999999999999888888888877777554
No 367
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=24.27 E-value=1.4e+02 Score=25.91 Aligned_cols=31 Identities=13% Similarity=-0.158 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 199 YVKAYQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 199 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
...|+-.+|.+|+.++++++|.+..++++..
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4567888899999999999999999999864
No 368
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=23.79 E-value=2.6e+02 Score=21.68 Aligned_cols=50 Identities=12% Similarity=-0.049 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy6284 183 VSAEADCTASLKL--DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232 (270)
Q Consensus 183 ~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 232 (270)
+.+...|.-+... --..+..|-..|..+...|++.+|.+.|+.+++.+-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3556666666654 4466777778888899999999999999999997644
No 369
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=23.30 E-value=1.9e+02 Score=24.99 Aligned_cols=30 Identities=20% Similarity=0.067 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Q psy6284 166 AVFFANRALCFLKMKNYVSAEADCTASLKL 195 (270)
Q Consensus 166 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 195 (270)
..++..+|.+|+.++++++|+..+++++..
T Consensus 191 ~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 191 DVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 358888999999999999999999999864
No 370
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=22.98 E-value=18 Score=31.41 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 129 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
+..|..+..+|..+-+.|+|++|+.+|..+++.
T Consensus 8 ~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~ 40 (444)
T 2zan_A 8 LQKAIDLASKAAQEDKAGNYEEALQLYQHAVQY 40 (444)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345566777888888999999999999999885
No 371
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.61 E-value=1.4e+02 Score=20.51 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=12.5
Q ss_pred cCHHHHHHHHHHHHhcCC
Q psy6284 180 KNYVSAEADCTASLKLDN 197 (270)
Q Consensus 180 ~~~~~A~~~~~~al~~~p 197 (270)
..+++|..+..++|.+|.
T Consensus 17 ~~h~~AF~~Is~AL~~DE 34 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE 34 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 346777777777777764
No 372
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=22.37 E-value=4.3e+02 Score=25.49 Aligned_cols=95 Identities=12% Similarity=0.006 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Q psy6284 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY--VKAYQRRAAARR 211 (270)
Q Consensus 134 ~~~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~ 211 (270)
.-...|..+.-.|+-+........+.+-..+...-...+|+.++..|+.+.+-...+......... ..+-+.+|.+|.
T Consensus 492 AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAya 571 (963)
T 4ady_A 492 AALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 345567777777775544444444444333333333445555556777766555555444322111 123445677888
Q ss_pred HcCCHHHHHHHHHHHHh
Q psy6284 212 SLNHFEDARKDILKVLA 228 (270)
Q Consensus 212 ~~g~~~~A~~~~~~al~ 228 (270)
..|+...-.+.+..+..
T Consensus 572 GTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp TSCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 89996544445555543
No 373
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=22.21 E-value=1.4e+02 Score=22.73 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQT 161 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~ 161 (270)
|.-+...|..+-..|+|.+|...|+.+++.
T Consensus 115 AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 115 SLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 334445555555556666666666665554
No 374
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=21.78 E-value=1.1e+02 Score=20.56 Aligned_cols=33 Identities=9% Similarity=-0.022 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy6284 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLA 228 (270)
Q Consensus 196 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 228 (270)
...+.+..+.-|.-..+.|+|++|.+.++.+-+
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345677777788888899999999998887744
No 375
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=21.50 E-value=1.8e+02 Score=19.06 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy6284 216 FEDARKDILKVLALEPNNKQAEIELAELN 244 (270)
Q Consensus 216 ~~~A~~~~~~al~~~p~~~~a~~~l~~~~ 244 (270)
..+++..-..+++.+|+|+.+...+....
T Consensus 32 ~~~~l~~Al~~L~~~psNPa~LAe~Qa~l 60 (92)
T 2g0u_A 32 LNKQLQDAQANLTKNPSDPTALANYQMIM 60 (92)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 33344444445556666666655555443
No 376
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=21.30 E-value=3e+02 Score=21.52 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHh-----hCCCCHH---HHHHHHHHHH-HccCHHHHHHHHHHHH
Q psy6284 149 GEAIEKYNVAIQ-----TYPHDAV---FFANRALCFL-KMKNYVSAEADCTASL 193 (270)
Q Consensus 149 ~~A~~~y~~al~-----~~p~~~~---~~~~~a~~~~-~~~~~~~A~~~~~~al 193 (270)
+.|...|+.|++ +.|.+|. +.+|.+..|+ -+++.++|+....+++
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666776664 3455542 3333444433 3566777666655544
No 377
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.21 E-value=2e+02 Score=24.85 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy6284 200 VKAYQRRAAARRSLNHFEDARKDILKVLAL 229 (270)
Q Consensus 200 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~~ 229 (270)
..|+-.+|.+|+-.|++++|.+..++++..
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 457788899999999999999999999864
No 378
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.20 E-value=1.5e+02 Score=22.99 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy6284 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP 163 (270)
Q Consensus 132 a~~~~~~g~~~~~~g~~~~A~~~y~~al~~~p 163 (270)
|.-|...|..+-..|+|.+|...|+.+|+...
T Consensus 150 AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 150 SIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 45566677777777888888777877777543
No 379
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=20.92 E-value=3.6e+02 Score=22.82 Aligned_cols=111 Identities=12% Similarity=0.088 Sum_probs=61.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH-HHH---------------HHHHccCHHHHHHHHHHHHhcC---
Q psy6284 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFAN-RAL---------------CFLKMKNYVSAEADCTASLKLD--- 196 (270)
Q Consensus 136 ~~~g~~~~~~g~~~~A~~~y~~al~~~p~~~~~~~~-~a~---------------~~~~~~~~~~A~~~~~~al~~~--- 196 (270)
-..|..+...|+...|.-+|--+=.++ .-..+|.. +-. -...+.++-+-...|+.++...
T Consensus 252 ~~LG~RL~~~g~~~~A~lCYi~Ag~~d-k~v~iW~~~~~~~~~~~~~~~~s~~~~~~~~Lqe~iEkv~vl~~a~~~~~~~ 330 (399)
T 2pm7_A 252 IKLGDRMKENGHRQDSLTLYLAAGSLD-KVASIWLSEFPDLEDKLKKDNKTIYEAHSECMTEFIERFTVFSNFINGSSTI 330 (399)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHTCHH-HHHHHHHHSHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTSCC---C
T ss_pred HHHHHHHHhCCChhhhhHHHHhhCCHH-HHHHHHHHhcchhhhccccccCCcccccHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 466777777788888888875552111 01122221 000 0011222333333344443211
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhCCC
Q psy6284 197 --NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250 (270)
Q Consensus 197 --p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~~ 250 (270)
+.....+...|.++...|.++.|+++++.. -.+++.+.....+++...|..
T Consensus 331 ~~~~l~~~~~eYA~lLA~qG~l~~A~~yL~~l---p~~~~~~~~lr~Rl~~a~~~~ 383 (399)
T 2pm7_A 331 NNEQLIAKFLEFINLTTSTGNFELATEFLNSL---PSDNEEVKTEKARVLIASGKS 383 (399)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHS---CTTCHHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHHHhCCCHHHHHHHHHhC---CCCChhHHHHHHHHHHhcCCC
Confidence 122345667899999999999999998732 225577777777777776653
Done!