RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6284
(270 letters)
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 149 bits (377), Expect = 2e-45
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 3/143 (2%)
Query: 109 DKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPH---D 165
+ + +S +++GN+L K G +G A+ Y A+
Sbjct: 5 SSGMTVSGPGTPEPRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQ 64
Query: 166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILK 225
AV NRA C LK+++Y AE + + +++ D VKA RR+ A L + A D+ +
Sbjct: 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQR 124
Query: 226 VLALEPNNKQAEIELAELNRKLN 248
++LEP NK + L ++ +
Sbjct: 125 CVSLEPKNKVFQEALRNISGPSS 147
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 146 bits (370), Expect = 4e-44
Identities = 40/127 (31%), Positives = 70/127 (55%)
Query: 122 EEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN 181
E + A K Q N K + AI+ Y+ AI+ P +A+++ NR+L +L+ +
Sbjct: 3 EPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC 62
Query: 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
Y A D T +++LD Y+K Y RRAA+ +L F A +D V+ ++P++K A+++
Sbjct: 63 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122
Query: 242 ELNRKLN 248
E N+ +
Sbjct: 123 ECNKIVK 129
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 144 bits (365), Expect = 5e-44
Identities = 37/111 (33%), Positives = 61/111 (54%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
KE+GNK + G +A++ Y+ AI+ PH+ V ++NR+ + K +Y A D ++ L
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
+ K Y R+AAA LN FE+A++ + L E NN Q + L + +
Sbjct: 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 142 bits (360), Expect = 3e-43
Identities = 32/110 (29%), Positives = 62/110 (56%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K +GN+ K+G + A+ YN A++ P +A+ ++NRA C K+ + A DC ++L
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRL 76
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
D+ ++K Y R+AA ++ + A++ L ++P+N++A + R
Sbjct: 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCLR 126
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial;
mitochondrial ribosome, large ribosomal subunit,
ribosomal R ribosome; 12.10A {Bos taurus}
Length = 148
Score = 142 bits (361), Expect = 4e-43
Identities = 54/101 (53%), Positives = 70/101 (69%), Gaps = 1/101 (0%)
Query: 1 MSAYERV-KQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVM 59
MS++ R +QW TFARIW++ D K Q P + A + S LQG HKP+YH L+DCGDHV++M
Sbjct: 1 MSSFSRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIM 60
Query: 60 NSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
N+RHIA G +W+++ Y HTGYPGG A QLH DP
Sbjct: 61 NTRHIAFSGNKWEQKVYSSHTGYPGGFRQVTAAQLHLRDPV 101
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 138 bits (350), Expect = 1e-41
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 110 KQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFF 169
+ + A+ K +GN+ ++G + +A++ Y AI+ P DA +
Sbjct: 2 GHHHHHHSHMNPDL--------ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLY 53
Query: 170 ANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLAL 229
+NRA C+ K+ + A DC ++L+ T++K Y R+AAA ++ + A K L L
Sbjct: 54 SNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113
Query: 230 EPNNKQAEIELAELNRK 246
+ + K+A
Sbjct: 114 DSSCKEAADGYQRCMMA 130
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 136 bits (344), Expect = 1e-40
Identities = 37/120 (30%), Positives = 60/120 (50%)
Query: 128 RIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA 187
+ SA KEQGN+L K+ EA Y AI P AV++ NRALC+LKM+ A A
Sbjct: 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA 64
Query: 188 DCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
DC +L+LD VKA+ + + +++A ++ + +L + + ++
Sbjct: 65 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 124
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 135 bits (342), Expect = 2e-40
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
+ +G + + W A++ Y I+ P DA ++NRA K+ ++ A ADC +++
Sbjct: 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 67
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI--ELAELNRKL 247
D +V+AY R+A A+ ++ + A + + + E+ +L K
Sbjct: 68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 135 bits (342), Expect = 2e-40
Identities = 40/113 (35%), Positives = 58/113 (51%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K +GN+ +K + A+ Y AI+ P +AV+F NRA + K+ NY A DC ++ +
Sbjct: 16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI 75
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
D Y KAY R A SLN +A K L L+P+N+ + L KL
Sbjct: 76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 135 bits (342), Expect = 4e-40
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K +GN + ++ +AI+ Y A+ P + ++ +NRA + + A D + +
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI--ELAELNRKLN 248
D Y KA+ R AR + ++ A++ K + E N + L RK+
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE 129
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 125 bits (316), Expect = 1e-35
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 112 DSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF--- 168
++S + D +++ SA KE+GN+ K+ + EAI KY A+ + H +
Sbjct: 18 YFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ 77
Query: 169 -------------FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215
N A C+ K K+Y A + LK+D VKA + A
Sbjct: 78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF 137
Query: 216 FEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
E+A++++ K +L PNN KL
Sbjct: 138 LEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 125 bits (315), Expect = 9e-35
Identities = 37/118 (31%), Positives = 59/118 (50%)
Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC 189
SA KEQGN+L K+ EA Y AI P AV++ NRALC+LKM+ A ADC
Sbjct: 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADC 61
Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
+L+LD VKA+ + + +++A ++ + +L + + ++
Sbjct: 62 RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 121 bits (305), Expect = 1e-34
Identities = 31/147 (21%), Positives = 60/147 (40%), Gaps = 21/147 (14%)
Query: 119 SDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------------- 165
S+ E++ ++ S +++GN+L + + EAI+ Y A+
Sbjct: 1 SNAEDD---KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE 57
Query: 166 -----AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR 220
+AN + C+L + + AE + LK + T KA RRA AR + ++A
Sbjct: 58 LDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAE 117
Query: 221 KDILKVLALEPNNKQAEIELAELNRKL 247
+D+ +L P ++ +
Sbjct: 118 EDLKLLLRNHPAAASVVAREMKIVTER 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 125 bits (316), Expect = 2e-34
Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 19/158 (12%)
Query: 106 EELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD 165
+ + E E + EE ++ + KE+G KEGK+ +A+ +Y + ++
Sbjct: 125 HLKSFEKAKESWEMNSEE----KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE 180
Query: 166 AVF---------------FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210
+ F N A+C LK++ + +A C +L+LD+ K RR A
Sbjct: 181 SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH 240
Query: 211 RSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
++N FE AR D KVL L PNNK A+ +LA +++
Sbjct: 241 LAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 278
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 126 bits (319), Expect = 7e-34
Identities = 39/119 (32%), Positives = 69/119 (57%)
Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD 188
+ A K Q N K + AI+ Y+ AI+ P +A+++ NR+L +L+ + Y A D
Sbjct: 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD 62
Query: 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
T +++LD Y+K Y RRAA+ +L F A +D V+ ++P++K A+++ E N+ +
Sbjct: 63 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV 121
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 109 bits (275), Expect = 1e-30
Identities = 25/109 (22%), Positives = 46/109 (42%)
Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD 188
++ KEQGN L K+G + EA+ Y+ I P + V ++N+A+ +K+ Y A
Sbjct: 1 MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM 60
Query: 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE 237
C L+ +T R R + V+ ++ + +
Sbjct: 61 CQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELPEGYD 109
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 108 bits (273), Expect = 5e-30
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 13/123 (10%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
KE GN K+ + A++ Y+ A + P + + N+A + + +Y C ++++
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV 67
Query: 196 D-------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------KQAEIELAE 242
KAY R + ++DA K LA +QAE L E
Sbjct: 68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILKE 127
Query: 243 LNR 245
R
Sbjct: 128 QER 130
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 104 bits (261), Expect = 2e-28
Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K+ GN K+ + +A Y+ AI+ P + F+ N+A + + K + C ++++
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV 71
Query: 196 D-------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK 234
KA R A + N A + + L+ + +
Sbjct: 72 GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 109 bits (273), Expect = 3e-28
Identities = 43/159 (27%), Positives = 64/159 (40%), Gaps = 17/159 (10%)
Query: 107 ELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA 166
E+ D ++ ++ + +RI +A K GN L KE K EA+++Y +AI D
Sbjct: 154 EVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF 213
Query: 167 VF-----------------FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209
+F N A C +K+K Y A C L + KA RR A
Sbjct: 214 MFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKA 273
Query: 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ L + AR D K P++K EL L +
Sbjct: 274 KAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 102 bits (254), Expect = 5e-25
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---------------FANRALCFLKMK 180
KE+G K GK+ +A+ +Y + + F N A+C+LK++
Sbjct: 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR 331
Query: 181 NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240
Y A C +L LD+ K RR A+ +N FE A+ D KVL + P NK A +++
Sbjct: 332 EYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI 391
Query: 241 AELNRKL 247
+ +K
Sbjct: 392 SMCQKKA 398
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 96.7 bits (241), Expect = 2e-23
Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 17/173 (9%)
Query: 92 WQLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEA 151
+ + K D ED + D+++ D + + K GN K W A
Sbjct: 184 LKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVD-KILLISEDLKNIGNTFFKSQNWEMA 242
Query: 152 IEKYNVAI---QTYPHDA-------------VFFANRALCFLKMKNYVSAEADCTASLKL 195
I+KY + + A N C LKM ++ A C +L++
Sbjct: 243 IKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
D + KA RRA + L ++ A D+ K + P +K + EL ++ +K+
Sbjct: 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 355
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 96.3 bits (240), Expect = 5e-23
Identities = 27/117 (23%), Positives = 52/117 (44%)
Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD 188
+A E G KL+ G+ +A+ +++ A+ P + + + RA FL M +A D
Sbjct: 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD 82
Query: 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
T ++L + A +R ++A D KVL P+ + + ++L +
Sbjct: 83 LTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK 139
Score = 89.7 bits (223), Expect = 1e-20
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFA----NRALCFLKMKNYVSAEADCTA 191
E +L+++G++ +A KY ++T P A + CF K + V A C+
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320
Query: 192 SLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
L+++ V A + RA A +++A +D N++Q L + R L
Sbjct: 321 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377
Score = 84.7 bits (210), Expect = 6e-19
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 2/138 (1%)
Query: 101 LDKACEELDK--QDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA 158
LD+A ++ K + + + E + L + + Q G + AI +
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169
Query: 159 IQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218
++ DA RA CF+K A +D A+ KL N +A+ + + L E
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL 229
Query: 219 ARKDILKVLALEPNNKQA 236
+ ++ + L L+ ++K+
Sbjct: 230 SLSEVRECLKLDQDHKRC 247
Score = 65.9 bits (161), Expect = 2e-12
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 2/103 (1%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ K+ K EAI + +Q P + +RA +L + Y A D + + +
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
+ + A+R L + ++D K+L ++ N K+ EI A
Sbjct: 362 DQQIREGLEKAQRLLKQSQ--KRDYYKILGVKRNAKKQEIIKA 402
Score = 61.2 bits (149), Expect = 6e-11
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 11/109 (10%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G L E + +++ + L A + A++ D
Sbjct: 10 GVDLGTENLYFQSMADVEKHL-----------ELGKKLLAAGQLADALSQFHAAVDGDPD 58
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
AY RRA ++ + A D+ KV+ L+ + A ++ L K
Sbjct: 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107
Score = 60.5 bits (147), Expect = 9e-11
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 15/125 (12%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---------------FANRALCFLKMKNYV 183
G+ L+K+GK EA + + +++ P + ++AL +Y
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160
Query: 184 SAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243
+A A L++ + + RA A D+ L+ +N +A +++ L
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220
Query: 244 NRKLN 248
+L
Sbjct: 221 YYQLG 225
Score = 57.0 bits (138), Expect = 1e-09
Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 12/114 (10%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+KEG+ +AI A + + F + + ++ ++ + ++ LKLD
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243
Query: 199 YVKAYQRRAAARR------------SLNHFEDARKDILKVLALEPNNKQAEIEL 240
+ + + ++ + DA V+ EP+ + +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRS 297
Score = 55.1 bits (133), Expect = 6e-09
Identities = 20/125 (16%), Positives = 33/125 (26%), Gaps = 15/125 (12%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ GK A+ IQ R LK AE D LK + +
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 199 YVKAYQ---------------RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243
+ + +A + A + K+L + + + AE
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186
Query: 244 NRKLN 248
K
Sbjct: 187 FIKEG 191
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 95.0 bits (237), Expect = 8e-23
Identities = 26/110 (23%), Positives = 50/110 (45%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
E G KL+ G+ +A+ +++ A+ P + + + RA FL M +A D T + L
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
+ A +R ++A D KVL P+ ++ + ++L +
Sbjct: 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116
Score = 92.0 bits (229), Expect = 9e-22
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Query: 126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFA----NRALCFLKMKN 181
++ E +L+++G++ +A KY ++T P A + CF K +
Sbjct: 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK 287
Query: 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
V A C+ L+++ V A + RA A +++A +D N++Q L
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347
Query: 242 ELNRKL 247
+ R L
Sbjct: 348 KAQRLL 353
Score = 83.9 bits (208), Expect = 7e-19
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 2/138 (1%)
Query: 101 LDKACEELDK--QDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA 158
LD+A ++ K + + ++E E L + + Q + AI +
Sbjct: 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146
Query: 159 IQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218
++ DA RA CF+K A +D A+ KL + +A+ + + L E
Sbjct: 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL 206
Query: 219 ARKDILKVLALEPNNKQA 236
+ ++ + L L+ ++K+
Sbjct: 207 SLSEVRECLKLDQDHKRC 224
Score = 58.1 bits (141), Expect = 6e-10
Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
+ +KEG+ +AI A + + F + + ++ ++ + ++ LKLD
Sbjct: 160 RAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219
Query: 198 TYVKAYQRRAAARR------------SLNHFEDARKDILKVLALEPNNKQAEIEL 240
+ + + ++ + DA V+ EP+ + +
Sbjct: 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274
Score = 58.1 bits (141), Expect = 6e-10
Identities = 19/125 (15%), Positives = 32/125 (25%), Gaps = 15/125 (12%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ GK A+ I R LK AE D LK + +
Sbjct: 44 ATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 103
Query: 199 YVKAYQ---------------RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243
+ + +A + A + K+L + + + AE
Sbjct: 104 EQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163
Query: 244 NRKLN 248
K
Sbjct: 164 FIKEG 168
Score = 56.1 bits (136), Expect = 2e-09
Identities = 18/126 (14%), Positives = 40/126 (31%), Gaps = 16/126 (12%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANR------------ALCFLKMKNYVSAE 186
+ G ++ + ++ FA+ A ++ Y A
Sbjct: 195 STLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 254
Query: 187 ADCTASLKLD----NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242
+ + +K + V++ +R +A + +VL +EP+N A + AE
Sbjct: 255 SKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314
Query: 243 LNRKLN 248
Sbjct: 315 AYLIEE 320
Score = 55.0 bits (133), Expect = 6e-09
Identities = 19/84 (22%), Positives = 31/84 (36%)
Query: 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL 224
D L A + A++ D AY RRA ++ + A D+
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 225 KVLALEPNNKQAEIELAELNRKLN 248
KV+AL+ + A ++ L K
Sbjct: 62 KVIALKMDFTAARLQRGHLLLKQG 85
Score = 31.9 bits (73), Expect = 0.20
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY 182
+ E + EAI+ Y A + +D +K
Sbjct: 313 AEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS 356
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 92.6 bits (231), Expect = 1e-22
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
+ +G + + W A++ Y I+ P DA ++NRA K+ ++ A ADC +++
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEI--ELAELNRK 246
D +V+AY R+A A+ ++ + A + + + E+ +L K
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255
Score = 74.5 bits (184), Expect = 5e-16
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 1/101 (0%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K +GNK K ++ EAIE YN A + + D + NRA + Y +A + +++
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQ 67
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
Y+ + + + + D+ K + +
Sbjct: 68 GREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108
Score = 69.1 bits (170), Expect = 4e-14
Identities = 21/98 (21%), Positives = 35/98 (35%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ L K + ++K P A + ++ +A T +K
Sbjct: 112 ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 171
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ Y RAAA L F +A D K + +PN +A
Sbjct: 172 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRA 209
Score = 64.9 bits (159), Expect = 1e-12
Identities = 14/110 (12%), Positives = 34/110 (30%), Gaps = 1/110 (0%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
++G++ AI N A++ + + F ++ N D +++
Sbjct: 45 AAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQK 104
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ + R A L + E K + P + + +
Sbjct: 105 SLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153
Score = 57.9 bits (141), Expect = 4e-10
Identities = 10/98 (10%), Positives = 28/98 (28%), Gaps = 1/98 (1%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ G + I+ Y A K++N A ++
Sbjct: 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPE 137
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ + + + + +A K +++ P + +
Sbjct: 138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARG 175
Score = 46.0 bits (110), Expect = 4e-06
Identities = 11/74 (14%), Positives = 19/74 (25%), Gaps = 1/74 (1%)
Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
A F K + + A + +L RAAA +E A
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Query: 223 ILKVLALEPNNKQA 236
+ + +
Sbjct: 61 LNDAVEQGREMRAD 74
Score = 31.8 bits (73), Expect = 0.19
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY 182
+ ++ A+E + A + R + L K
Sbjct: 214 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 257
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 91.3 bits (227), Expect = 4e-21
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K++GN+ + K+ +AI+ YN A++ D VF++N + C++ + + T +L+L
Sbjct: 10 KDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALEL 68
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKV-LALEPNNKQAEIELAELNRKLNI 249
Y K RRA+A L F DA D+ + L + N+ E L K +
Sbjct: 69 KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM 123
Score = 82.5 bits (204), Expect = 5e-18
Identities = 38/210 (18%), Positives = 68/210 (32%), Gaps = 7/210 (3%)
Query: 39 QGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEID 98
+ + K P + + Y+ A + + D
Sbjct: 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209
Query: 99 PTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA 158
+ KA ++Q +E+ ++E+ A+ + G + A E A
Sbjct: 210 ESFTKAARLFEEQLDKNNEDEKLKEKL------AISLEHTGIFKFLKNDPLGAHEDIKKA 263
Query: 159 IQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218
I+ +P + AL + +LKLD+ Y R L +++
Sbjct: 264 IELFPRVNSYI-YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322
Query: 219 ARKDILKVLALEPNNKQAEIELAELNRKLN 248
A KD K L+P N I+LA L + N
Sbjct: 323 AGKDFDKAKELDPENIFPYIQLACLAYREN 352
Score = 72.9 bits (179), Expect = 9e-15
Identities = 18/110 (16%), Positives = 38/110 (34%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ E ++ A++ +++ + +R ++NY A D + +LD
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE 336
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ Y + A N F+D + P + AE+ N
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN 386
Score = 69.0 bits (169), Expect = 1e-13
Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 9/107 (8%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK---------MKNYVSAEADC 189
L + + +A+++Y++AI+ + A K ++N++ A
Sbjct: 379 AEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438
Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ KLD +A A + ++A + L ++
Sbjct: 439 EKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEK 485
Score = 67.8 bits (166), Expect = 4e-13
Identities = 16/115 (13%), Positives = 35/115 (30%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + +A + ++ A + P + + A + + E + + +
Sbjct: 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSP 253
+ A N F+ A K + LE + +A L K +
Sbjct: 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425
Score = 65.5 bits (160), Expect = 3e-12
Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+E K+ + ++ A + +P A ++ A +++L+N
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404
Query: 199 YVKAYQRRAAA---------RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
Y A ++ +F +A + K L+P ++QA+I LA++ +
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463
Score = 47.8 bits (114), Expect = 2e-06
Identities = 14/79 (17%), Positives = 21/79 (26%)
Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD 188
IA V + + EA A + P A L+ ++ A
Sbjct: 412 IAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471
Query: 189 CTASLKLDNTYVKAYQRRA 207
S L T + Q
Sbjct: 472 FEESADLARTMEEKLQAIT 490
Score = 46.7 bits (111), Expect = 3e-06
Identities = 18/86 (20%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
A+ ++ F + K Y A +L+L V Y +A S+ + +
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEM 61
Query: 223 ILKVLALEPNNKQAEIELAELNRKLN 248
K L L+P+ + + A N L
Sbjct: 62 STKALELKPDYSKVLLRRASANEGLG 87
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H
1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J
2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Length = 142
Score = 84.5 bits (210), Expect = 1e-20
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 11 NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYE 70
T R W++ DA + A +++ L+G+HK Y P D GD++IV+N+ +A+ G +
Sbjct: 9 ETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNK 68
Query: 71 WKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
+ Y+HHTG+ GG+ ++ P
Sbjct: 69 RTDKVYYHHTGHIGGIKQATFEEMIARRPE 98
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N
2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N
2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Length = 140
Score = 84.1 bits (209), Expect = 1e-20
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 15 RIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKR 74
W + DA+ + A I+ L+G+H+P + P GD V+V+N+ I + G + +++
Sbjct: 11 PRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQK 70
Query: 75 AYFHHTGYPGGVSWTLAWQLHEIDPT 100
Y ++GYPGG+ ++ P
Sbjct: 71 IYTRYSGYPGGLKKIPLEKMLATHPE 96
>3f1f_N 50S ribosomal protein L13; RF2, ribosome, termination, tRNA; 3.00A
{Thermus thermophilus} PDB: 1vsa_H 3d5d_N 3d5b_N 3f1h_N
Length = 163
Score = 84.2 bits (209), Expect = 3e-20
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 15 RIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKR 74
W + DA+ + A I+ L+G+H+P + P GD V+V+N+ I + G + +++
Sbjct: 34 PRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQK 93
Query: 75 AYFHHTGYPGGVSWTLAWQLHEIDPT 100
Y ++GYPGG+ ++ P
Sbjct: 94 IYTRYSGYPGGLKKIPLEKMLATHPE 119
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H*
1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G*
3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Length = 174
Score = 84.2 bits (209), Expect = 3e-20
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 11 NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYE 70
+ W + DA A +I+ ++G+H+P + P GD V+V+N+ +AL G +
Sbjct: 35 KNDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKK 94
Query: 71 WKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
+ Y +TGY GG+ A + P
Sbjct: 95 LDDKVYTRYTGYQGGLKTETAREALSKHPE 124
>3bbo_L Ribosomal protein L13; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 250
Score = 84.5 bits (209), Expect = 1e-19
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 11 NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYE 70
+ W++ DA A I+ H++G++ Y P D G VIV+N+ +A+ G +
Sbjct: 108 VPTDKKWYVVDATDLILGRMASTIAIHIRGKNLASYTPSVDMGAFVIVVNADKVAVSGKK 167
Query: 71 WKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
++ Y H+G PGG+ QL + P
Sbjct: 168 RTQKLYRRHSGRPGGLKEETFDQLQKRIPE 197
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 86.3 bits (214), Expect = 2e-19
Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 109 DKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF 168
+ + D R A AV K +GN + EAI+ Y AI+ P++ VF
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLA 228
++N + C++ + T +L++ + KA RRA+A SL +F DA D L VL+
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFD-LSVLS 120
Query: 229 LEPNNKQAEIELAELNRKLN 248
L + A IE L R LN
Sbjct: 121 LNGDFDGASIE-PMLERNLN 139
Score = 72.1 bits (177), Expect = 1e-14
Identities = 29/148 (19%), Positives = 50/148 (33%), Gaps = 7/148 (4%)
Query: 101 LDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160
L K+ + S + + E A A+ G + +A +I
Sbjct: 218 LTKSTDMYHSLLSANTVDDPLRENA----ALALCYT--GIFHFLKNNLLDAQVLLQESIN 271
Query: 161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR 220
+P + AL +N ++ L+ Y Y R L +++A+
Sbjct: 272 LHPTPNSYI-FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330
Query: 221 KDILKVLALEPNNKQAEIELAELNRKLN 248
+D K +L P N I+LA L K
Sbjct: 331 EDFQKAQSLNPENVYPYIQLACLLYKQG 358
Score = 71.3 bits (175), Expect = 3e-14
Identities = 16/110 (14%), Positives = 36/110 (32%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
L + E + + A+ P + +R + +++Y +A+ D + L+
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
V Y + A F ++ + P + AE+
Sbjct: 343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392
Score = 67.1 bits (164), Expect = 8e-13
Identities = 19/111 (17%), Positives = 32/111 (28%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + A E + A P + + A K + +EA + T
Sbjct: 317 GQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249
+ A F+ A K LE ++ + + L K I
Sbjct: 377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427
Score = 60.5 bits (147), Expect = 1e-10
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 16/126 (12%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
L K+GK+ E+ +N +P A ++ +A + +L+
Sbjct: 351 ACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410
Query: 199 YVKAYQRRAAA----------------RRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242
K + + F A K + K L+P ++QA+I LA+
Sbjct: 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ 470
Query: 243 LNRKLN 248
L ++
Sbjct: 471 LKLQME 476
Score = 60.1 bits (146), Expect = 1e-10
Identities = 15/114 (13%), Positives = 33/114 (28%), Gaps = 16/114 (14%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLK----------------MKNY 182
L G + AI++Y++A + K + +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 183 VSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+A T + +LD +A A + + ++A + L +
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEK 498
Score = 60.1 bits (146), Expect = 2e-10
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFA----NRALCFLKMKNYVSAEADCTASLKLDNTYVK 201
G P +A NR F KN+ A +++LD
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 202 AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
Y +A S E + K L ++P++ +A + A N L
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107
Score = 59.4 bits (144), Expect = 2e-10
Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 1/125 (0%)
Query: 124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV 183
+ L Y + + V + A+ + N +
Sbjct: 201 QRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260
Query: 184 SAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243
A+ S+ L T +Y A + ++ K K + L P ++
Sbjct: 261 DAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQM 319
Query: 244 NRKLN 248
L
Sbjct: 320 YFILQ 324
Score = 49.0 bits (117), Expect = 7e-07
Identities = 15/98 (15%), Positives = 28/98 (28%), Gaps = 2/98 (2%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPH--DAVFFANRALCFLKMKNYVSAEADCTASLKL 195
+ + + + A + A+Q D + L Y S + T L
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233
A N+ DA+ + + + L P
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTP 276
Score = 48.2 bits (115), Expect = 1e-06
Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 4/124 (3%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-- 196
+ G + IE A++ P + RA + N+ A D +
Sbjct: 66 SACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDF 125
Query: 197 -NTYVKAYQRRAAARRSLNHF-EDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPI 254
++ R ++++ E+ KD + + P+N + L +
Sbjct: 126 DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNT 185
Query: 255 KVDF 258
++
Sbjct: 186 SSNY 189
Score = 45.9 bits (109), Expect = 7e-06
Identities = 15/79 (18%), Positives = 24/79 (30%)
Query: 126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSA 185
+ + Q + E K+ AI+ A + P A L+M+ A
Sbjct: 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA 481
Query: 186 EADCTASLKLDNTYVKAYQ 204
S L T + Q
Sbjct: 482 IELFEDSAILARTMDEKLQ 500
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 71.4 bits (176), Expect = 2e-14
Identities = 23/110 (20%), Positives = 41/110 (37%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN + G+ EAIE Y A++ P + N A + + A ++L+ +
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
++L E+A+ LK + +PN A L +
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Score = 69.5 bits (171), Expect = 8e-14
Identities = 15/112 (13%), Positives = 35/112 (31%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
E ++ + G + A + P + + + + + T ++K +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+AY + ++A + L L+P+ I LA
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
Score = 69.5 bits (171), Expect = 9e-14
Identities = 19/111 (17%), Positives = 39/111 (35%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
+ + + + +AI+ P A ++N + + A +L+L
Sbjct: 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
++ Y AAA + E A + + L P+ +L L + L
Sbjct: 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALG 149
Score = 68.0 bits (167), Expect = 2e-13
Identities = 20/109 (18%), Positives = 42/109 (38%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
N L ++G EA + YN A++ P A N A + N A +L++
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
+ A+ A+ + ++A + + + P A + +++
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
Score = 67.2 bits (165), Expect = 4e-13
Identities = 24/110 (21%), Positives = 41/110 (37%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN L + + A+ Y A+ P+ AV N A + + A +++L
Sbjct: 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ AY A A + +A L L P + + LA + R+
Sbjct: 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319
Score = 66.8 bits (164), Expect = 7e-13
Identities = 25/110 (22%), Positives = 44/110 (40%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
++G AI+ Y AI+ PH + N A + + AE +L+L T
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT 303
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ + A +R + E+A + K L + P A LA + ++
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353
Score = 66.0 bits (162), Expect = 1e-12
Identities = 27/98 (27%), Positives = 41/98 (41%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN L G+ EA Y AI+T P+ AV ++N F A ++ LD
Sbjct: 142 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 201
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
++ AY + F+ A L+ L+L PN+
Sbjct: 202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 239
Score = 64.9 bits (159), Expect = 3e-12
Identities = 19/110 (17%), Positives = 37/110 (33%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
LV G A++ Y A+Q P ++ + A+A +++
Sbjct: 108 AAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ A+ + A K + L+PN A I L + ++
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEAR 217
Score = 64.5 bits (158), Expect = 4e-12
Identities = 16/98 (16%), Positives = 33/98 (33%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G +G+ AI + A+ P+ + N + + + A A +L L
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ + A + A + + L+P+ A
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 273
Score = 34.1 bits (79), Expect = 0.035
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN 181
+ L ++GK EA+ Y AI+ P A ++N +M++
Sbjct: 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
Score = 27.5 bits (62), Expect = 4.7
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 203 YQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
A FE A + +++ EP+N + L+ ++ +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 66.9 bits (164), Expect = 3e-13
Identities = 23/110 (20%), Positives = 39/110 (35%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G L+K+G+ AI++Y A+ + F N+ A ++ T
Sbjct: 81 GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
K + A + A +KVL L+PN + A N +
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQD 190
Score = 63.4 bits (155), Expect = 5e-12
Identities = 14/114 (12%), Positives = 32/114 (28%), Gaps = 3/114 (2%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA---SLK 194
+ L K + EAIE +N + + RA+C+ ++ Y A+ D +
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68
Query: 195 LDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
++ A + + + ++
Sbjct: 69 ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122
Score = 58.8 bits (143), Expect = 2e-10
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 139 GNKLVKEGKWGEAI---EKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
+ K+ A E Y + + F +K A A++
Sbjct: 44 AVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR 103
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
D T + Y + + + +F A + + K + + +
Sbjct: 104 DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKV 144
Score = 58.1 bits (141), Expect = 4e-10
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 3/101 (2%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G+ +G + AI+ I+ D F + K YV A++ L+L
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN 174
Query: 199 YVKAYQRRAAARRSLNH---FEDARKDILKVLALEPNNKQA 236
Y RA A + + A+ K++ +
Sbjct: 175 IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215
Score = 56.9 bits (138), Expect = 8e-10
Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 11/109 (10%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN---YVSAEADCTASLKL 195
G ++ +A + ++ P+ + + RA A+ +++
Sbjct: 149 GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208
Query: 196 D--------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ ++A + A A +LAL+P NK+A
Sbjct: 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257
Score = 41.5 bits (98), Expect = 1e-04
Identities = 14/69 (20%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDI---LKVL 227
A K NY A Y RRA L ++ A+KDI +
Sbjct: 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV 67
Query: 228 ALEPNNKQA 236
Sbjct: 68 NATKAKSAD 76
Score = 41.1 bits (97), Expect = 2e-04
Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 8/83 (9%)
Query: 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVF--------FANRALCFLKMKNYVSAEADCTAS 192
+ K G A Y I+ A + ++ V A+A
Sbjct: 188 AQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNI 247
Query: 193 LKLDNTYVKAYQRRAAARRSLNH 215
L LD T KA +H
Sbjct: 248 LALDPTNKKAIDGLKMKLEHHHH 270
Score = 28.8 bits (65), Expect = 2.0
Identities = 2/44 (4%), Positives = 9/44 (20%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY 182
+A + + P + + ++
Sbjct: 228 AYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHHH 271
Score = 28.4 bits (64), Expect = 2.6
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
R A N++ +A + K+ A + N+
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 66.9 bits (164), Expect = 3e-13
Identities = 24/110 (21%), Positives = 42/110 (38%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G G A ++ A+ P F + + N+ +A + L+LD T
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
Y A+ R A + A+ D+L +PN+ + L +KL+
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD 159
Score = 56.9 bits (138), Expect = 8e-10
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 4/111 (3%)
Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY----PHDAVFFANRALCFLKMKNYVSA 185
S S+ L + + + + + A R + + + A
Sbjct: 3 TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA 62
Query: 186 EADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
D + +L + + + +F+ A + VL L+P A
Sbjct: 63 RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA 113
Score = 56.5 bits (137), Expect = 1e-09
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 3/111 (2%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G L + G + A E ++ ++ P NR + A+ D A + D
Sbjct: 84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN 143
Query: 199 YVKAYQRRAAARRSLNHFE---DARKDILKVLALEPNNKQAEIELAELNRK 246
A + L+ + ++ K + E L ++ +
Sbjct: 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ 194
Score = 47.7 bits (114), Expect = 1e-06
Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 1/116 (0%)
Query: 107 ELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDA 166
+LD++ + E + E+ D ++ + GN + ++ H +
Sbjct: 157 KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLS 215
Query: 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
+L + + SA A ++ + ++ L +D +
Sbjct: 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAE 271
Score = 42.3 bits (100), Expect = 7e-05
Identities = 14/109 (12%), Positives = 30/109 (27%), Gaps = 7/109 (6%)
Query: 144 KEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN---YVSAEADCTASLKLDNTYV 200
++ +A E + + + + +AD T + L
Sbjct: 156 QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLS 215
Query: 201 KAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA----EIELAELNR 245
+ SL + A +A +N +EL+ L +
Sbjct: 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 264
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 63.2 bits (154), Expect = 9e-13
Identities = 19/117 (16%), Positives = 33/117 (28%), Gaps = 7/117 (5%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
G + GKW +A + + +DA +F C + Y A + +D
Sbjct: 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN-------KQAEIELAELNRK 246
+ A L + A AL +A L + +
Sbjct: 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTAR 139
Score = 41.3 bits (97), Expect = 5e-05
Identities = 14/94 (14%), Positives = 29/94 (30%)
Query: 155 YNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLN 214
+ + + A+ A LD+ + + A R+SL
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 215 HFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+E A + ++ N + AE + +L
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLG 100
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 65.2 bits (160), Expect = 1e-12
Identities = 21/99 (21%), Positives = 38/99 (38%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
Q + + G + +A E + AI+ DA+ + N A + A A +L+LD+
Sbjct: 29 QMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDS 88
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ AY +++A+ K L N
Sbjct: 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127
Score = 63.7 bits (156), Expect = 3e-12
Identities = 17/98 (17%), Positives = 35/98 (35%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G LVK + A+ A++ +D +C A + A + D
Sbjct: 132 GTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ A+ + E A + + K + ++P++ A
Sbjct: 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
Score = 61.0 bits (149), Expect = 2e-11
Identities = 15/98 (15%), Positives = 36/98 (36%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN V + + EA + + A++ + F +K++ A +++L+
Sbjct: 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN 157
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+A + + ++A V +P + A
Sbjct: 158 DTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADA 195
Score = 60.6 bits (148), Expect = 4e-11
Identities = 14/98 (14%), Positives = 33/98 (33%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
N L + A+ Y+ A++ A + ++ + Y A+ +L+
Sbjct: 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME 123
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ L + A + + + L N+ +A
Sbjct: 124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Score = 49.1 bits (118), Expect = 3e-07
Identities = 14/77 (18%), Positives = 28/77 (36%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G L EG EA+ ++ + P A F N + + +N A ++ +
Sbjct: 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225
Query: 199 YVKAYQRRAAARRSLNH 215
++ A + +H
Sbjct: 226 HMLALHAKKLLGHHHHH 242
Score = 48.7 bits (117), Expect = 4e-07
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 4/92 (4%)
Query: 149 GEAIEKYNVAIQTYPHDAVFFANRALC----FLKMKNYVSAEADCTASLKLDNTYVKAYQ 204
G + ++ + P + + + +Y A T +++ + Y
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYI 61
Query: 205 RRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
A S+N E A K L L+ + A
Sbjct: 62 NFANLLSSVNELERALAFYDKALELDSSAATA 93
Score = 33.6 bits (78), Expect = 0.046
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY 182
G + +A+E + AI P + + L ++
Sbjct: 200 GVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHHHH 243
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 66.3 bits (162), Expect = 1e-12
Identities = 13/110 (11%), Positives = 26/110 (23%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + A P V A+ ++ + L
Sbjct: 181 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
V A +++L + + + L P A + + L
Sbjct: 241 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALE 290
Score = 65.9 bits (161), Expect = 2e-12
Identities = 11/100 (11%), Positives = 22/100 (22%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
+ A P V A+ ++ + L
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L P A
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 244
Score = 65.9 bits (161), Expect = 2e-12
Identities = 13/107 (12%), Positives = 25/107 (23%), Gaps = 2/107 (1%)
Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC 189
A+ S + A P V A+ ++
Sbjct: 344 VVAIASH--DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVL 401
Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ L V A +++L + + + L P A
Sbjct: 402 CQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448
Score = 65.2 bits (159), Expect = 3e-12
Identities = 12/98 (12%), Positives = 23/98 (23%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + A P V A+ ++ + L
Sbjct: 317 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 376
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L P A
Sbjct: 377 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVA 414
Score = 64.4 bits (157), Expect = 5e-12
Identities = 11/99 (11%), Positives = 22/99 (22%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
+ A P V A+ ++ + L
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L P A
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVA 380
Score = 64.4 bits (157), Expect = 6e-12
Identities = 13/96 (13%), Positives = 20/96 (20%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + A P V A+ ++ + L
Sbjct: 385 GGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQ 444
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK 234
V A R +L LA N+
Sbjct: 445 QVVAIASNGGGRPALESIVAQLSRPDPALAALTNDH 480
Score = 64.0 bits (156), Expect = 8e-12
Identities = 12/98 (12%), Positives = 24/98 (24%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + A P V A+ + ++ + L
Sbjct: 249 GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQ 308
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L P A
Sbjct: 309 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA 346
Score = 62.8 bits (153), Expect = 2e-11
Identities = 12/100 (12%), Positives = 24/100 (24%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
G + A P V A+ ++ + L
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 272
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A + +++L + + + L P A
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVA 312
Score = 61.7 bits (150), Expect = 5e-11
Identities = 12/111 (10%), Positives = 24/111 (21%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
+ A P V A+ ++ + L
Sbjct: 77 SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 136
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
V A +++L + + + L P A + L
Sbjct: 137 PEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQAL 187
Score = 60.5 bits (147), Expect = 1e-10
Identities = 14/119 (11%), Positives = 28/119 (23%), Gaps = 2/119 (1%)
Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC 189
A+ S + A P V A+ ++ +
Sbjct: 106 VVAIASH--DGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVL 163
Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ L V A +++L + + + L P A + L
Sbjct: 164 CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALE 222
Score = 54.8 bits (132), Expect = 7e-09
Identities = 13/111 (11%), Positives = 26/111 (23%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
+G E + P V A+ ++ + L
Sbjct: 44 RGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 103
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
V A +++L + + + L P A + L
Sbjct: 104 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 154
Score = 44.7 bits (106), Expect = 1e-05
Identities = 16/101 (15%), Positives = 26/101 (25%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
+ E A E +Q + A R + A A L L
Sbjct: 8 HQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNL 67
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L P A
Sbjct: 68 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 108
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 66.0 bits (160), Expect = 2e-12
Identities = 19/110 (17%), Positives = 42/110 (38%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
N ++G EA+ Y A++ +P A +N A + A ++++ T
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ AY + + + A + + + + P A LA +++
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Score = 63.7 bits (154), Expect = 1e-11
Identities = 23/109 (21%), Positives = 48/109 (44%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ L ++GK EA+ Y AI+ P A ++N +M++ A T +++++
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
+ A+ A+ + + +A L L+P+ A LA + +
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158
Score = 49.8 bits (118), Expect = 4e-07
Identities = 23/98 (23%), Positives = 40/98 (40%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN L + A++ Y AIQ P A +N A N A A +LKL
Sbjct: 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ AY A + + + D + + K++++ + +
Sbjct: 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
Score = 40.2 bits (93), Expect = 6e-04
Identities = 12/86 (13%), Positives = 29/86 (33%)
Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
P A N A + N A +L++ + A+ A+ + ++A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 223 ILKVLALEPNNKQAEIELAELNRKLN 248
+ + + P A + +++
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQ 91
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 63.2 bits (154), Expect = 3e-12
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 3/111 (2%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
+G + W A++ ++ + N + +KN AE T S+ D
Sbjct: 12 EGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
AY +R ++ A KD+ + L N+ + ++ L KL
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 119
Score = 62.0 bits (151), Expect = 9e-12
Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 18/142 (12%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLK-LDN 197
G EA + + +I H AV + R + + + + Y A D +L L
Sbjct: 44 GCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRG 103
Query: 198 TYVKAYQR---------------RAAARRSLNHFEDARKDILKVLALEPNNKQAEIE--L 240
+ Y+ A ++ A + + +++ + ++I+ +
Sbjct: 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAM 163
Query: 241 AELNRKLNIPLSPIKVDFLHNP 262
+ ++ I V L P
Sbjct: 164 ECVWKQKLYEPVVIPVGRLFRP 185
Score = 40.9 bits (96), Expect = 2e-04
Identities = 8/72 (11%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 165 DAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDIL 224
+A+ N + K++ A + + + + + L + +A K
Sbjct: 5 EAISLWNEGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFT 61
Query: 225 KVLALEPNNKQA 236
+ + + + A
Sbjct: 62 RSINRDKHLAVA 73
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 62.8 bits (153), Expect = 4e-12
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 16/123 (13%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDA----------------VFFANRALCFLKMK 180
++ + ++ G+ G+A+ + I AL + K +
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68
Query: 181 NYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240
NY A L+ V + A + +DA + K+L LE +N A I L
Sbjct: 69 NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128
Query: 241 AEL 243
Sbjct: 129 GNY 131
Score = 58.2 bits (141), Expect = 2e-10
Identities = 19/152 (12%), Positives = 39/152 (25%), Gaps = 4/152 (2%)
Query: 101 LDKACEELDK---QDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNV 157
+A + + D E D + S+ + E K + +A Y
Sbjct: 20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79
Query: 158 AIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA-RRSLNHF 216
+Q P++ A + A L+L+ + A +
Sbjct: 80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139
Query: 217 EDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ + K L+ + A
Sbjct: 140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTT 171
Score = 54.8 bits (132), Expect = 3e-09
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 7/114 (6%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRA-LCFLKMKNYVSAEADCTASLKLDN 197
V G+ +A+ Y +Q + +L + L
Sbjct: 95 AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE------IELAELNR 245
A R ++ +E AR + KV+ P+ + + E+NR
Sbjct: 155 KMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDKILRIEKEVNR 208
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 64.5 bits (157), Expect = 6e-12
Identities = 12/109 (11%), Positives = 23/109 (21%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ + G + +P A + + A +
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
+ A E A + L P +L R+L
Sbjct: 90 HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138
Score = 59.9 bits (145), Expect = 2e-10
Identities = 16/103 (15%), Positives = 31/103 (30%)
Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
+ + A++ P D V + A L M + + E L L + +A R
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVAR 62
Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
R + +A + + P + + L
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG 105
Score = 41.8 bits (98), Expect = 2e-04
Identities = 15/98 (15%), Positives = 23/98 (23%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + + EA A P +A A T + +L
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ RR L + +V A A
Sbjct: 124 EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 62.7 bits (153), Expect = 9e-12
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 2/112 (1%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQT--YPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
G L ++ ++ EA ++ A Q YP + F N L L+MK A+ SL+L+
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN 171
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
A + AR+ N ++ + L +
Sbjct: 172 RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFE 223
Score = 51.5 bits (124), Expect = 5e-08
Identities = 13/98 (13%), Positives = 31/98 (31%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G ++ K +A E + +++ + A K + YV A +
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQ 207
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
++ + + A L++ L P + +
Sbjct: 208 NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245
Score = 47.3 bits (113), Expect = 1e-06
Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 1/130 (0%)
Query: 108 LDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAV 167
L + S +++ ++ + A Y + G ++ G +A A++ P A
Sbjct: 14 LVPRGSHMGDQNPLKTDKGRDEARDAYI-QLGLGYLQRGNTEQAKVPLRKALEIDPSSAD 72
Query: 168 FFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVL 227
A A+ F A+ + +L D+ + +E+A + +L+
Sbjct: 73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132
Query: 228 ALEPNNKQAE 237
+++
Sbjct: 133 QDTLYPERSR 142
Score = 31.1 bits (71), Expect = 0.32
Identities = 9/66 (13%), Positives = 24/66 (36%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ L KE ++ A + Y++ Q +A ++ +A + +L
Sbjct: 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241
Query: 199 YVKAYQ 204
++ +
Sbjct: 242 SLEYQE 247
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 59.3 bits (144), Expect = 1e-11
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 2/100 (2%)
Query: 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209
E+ + + + + + + + +A A+L D TY A++
Sbjct: 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKT 62
Query: 210 RRSLNHFEDARKDILKVLALEPNN--KQAEIELAELNRKL 247
+ AR+ LA + +Q EL R+L
Sbjct: 63 LQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRL 102
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 58.6 bits (143), Expect = 2e-11
Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL-- 195
+G G + E+I+ + AIQ P ++ ++ + ++ Y A + +
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233
D + +A A R + E + LE ++
Sbjct: 72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 41.3 bits (98), Expect = 4e-05
Identities = 10/75 (13%), Positives = 26/75 (34%)
Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
+ + + NY + +++LD K + + A +L +E+A
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 223 ILKVLALEPNNKQAE 237
V+ + + +
Sbjct: 63 YNYVINVIEDEYNKD 77
Score = 26.6 bits (60), Expect = 4.1
Identities = 3/28 (10%), Positives = 5/28 (17%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDA 166
+ L E + H
Sbjct: 83 ADALRYIEGKEVEAEIAEARAKLEHHHH 110
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 61.5 bits (150), Expect = 3e-11
Identities = 17/125 (13%), Positives = 40/125 (32%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
E+G ++K EA + Q P + + L + + A + LD
Sbjct: 26 EEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 85
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIKV 256
+ + A + + ++ A + L +P +Q + + ++ +
Sbjct: 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145
Query: 257 DFLHN 261
F
Sbjct: 146 FFFAA 150
Score = 57.3 bits (139), Expect = 8e-10
Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 2/138 (1%)
Query: 101 LDKACEELDK--QDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA 158
+ A L + E+ D + + + ++ E + A
Sbjct: 105 ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164
Query: 159 IQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFED 218
++ P+DA A+ + + NY SA A+ +++L + + + A + N ++
Sbjct: 165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE 224
Query: 219 ARKDILKVLALEPNNKQA 236
A + L + P +
Sbjct: 225 ALDAYNRALDINPGYVRV 242
Score = 55.4 bits (134), Expect = 3e-09
Identities = 14/103 (13%), Positives = 35/103 (33%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + A A++ P DA + A +L ++
Sbjct: 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
YV+ A + +++ ++ A K +++ + ++ E +
Sbjct: 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281
Score = 51.5 bits (124), Expect = 7e-08
Identities = 12/91 (13%), Positives = 22/91 (24%)
Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
G + Y L LK+ N A A + +A++
Sbjct: 1 GHMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRS 60
Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ A + L+P +
Sbjct: 61 LGLTQAENEKDGLAIIALNHARMLDPKDIAV 91
Score = 41.9 bits (99), Expect = 1e-04
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G L + EA++ YN A+ P N A+ + M Y A ++ +
Sbjct: 213 GATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVL 227
+ D + +L V+
Sbjct: 273 GTTPTGEASREAT--RSMWDFFRMLLNVM 299
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 60.0 bits (146), Expect = 6e-11
Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 4/114 (3%)
Query: 139 GNKLVKE-GKWGEAIEKYNVAIQT--YPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
G L + E++ ++ A+ YP + N+ +C K + AEA SL
Sbjct: 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA-ELNRKLN 248
+ A++ A + DA K + + ++ L ++ + L
Sbjct: 143 QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG 196
Score = 44.6 bits (106), Expect = 1e-05
Identities = 19/147 (12%), Positives = 39/147 (26%), Gaps = 37/147 (25%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-- 196
+ ++ + +A A+++ P + + + RA + +K A+ +L +
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD 74
Query: 197 -----------------------------------NTYVKAYQRRAAARRSLNHFEDARK 221
T A + F A
Sbjct: 75 SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134
Query: 222 DILKVLALEPNNKQAEIELAELNRKLN 248
+ + LA +P A ELA
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAG 161
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 58.3 bits (141), Expect = 6e-11
Identities = 12/110 (10%), Positives = 30/110 (27%), Gaps = 3/110 (2%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
+G+ EA + ++ + A + + + A + L
Sbjct: 41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK---QAEIELAEL 243
+ L A++ V+ + K +A+ L +
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAI 150
Score = 39.0 bits (91), Expect = 4e-04
Identities = 14/99 (14%), Positives = 21/99 (21%)
Query: 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209
+ + A F AE D V AA
Sbjct: 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAI 79
Query: 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ F+ A AL N+ + +L
Sbjct: 80 YQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK 118
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 60.4 bits (147), Expect = 8e-11
Identities = 17/113 (15%), Positives = 36/113 (31%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
E+G + ++EG A+ + A+Q P + + + + A + L+L
Sbjct: 69 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 128
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNI 249
A A + + + A + + L P E +
Sbjct: 129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181
Score = 53.5 bits (129), Expect = 2e-08
Identities = 16/109 (14%), Positives = 43/109 (39%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G G++ +A++ + A+ P+D + + A A +L+L
Sbjct: 224 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
Y+++ + +L +A + L+ L ++ ++ E ++ +
Sbjct: 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332
Score = 53.5 bits (129), Expect = 2e-08
Identities = 26/141 (18%), Positives = 46/141 (32%), Gaps = 6/141 (4%)
Query: 101 LDKACEELDK---QDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNV 157
+ACE L EE + G+ L+ + + E E +
Sbjct: 148 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLA 206
Query: 158 AIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215
A++ P D + F Y A TA+L + + + A + N
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 266
Query: 216 FEDARKDILKVLALEPNNKQA 236
E+A + L L+P ++
Sbjct: 267 SEEAVAAYRRALELQPGYIRS 287
Score = 48.5 bits (116), Expect = 9e-07
Identities = 13/115 (11%), Positives = 28/115 (24%), Gaps = 15/115 (13%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + + AI ++ P + A+ F A L+
Sbjct: 105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164
Query: 199 YVKAYQRRAAARRSLNH---------------FEDARKDILKVLALEPNNKQAEI 238
Y F + ++ L + L+P + ++
Sbjct: 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219
Score = 27.7 bits (62), Expect = 4.0
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY 182
G + G EA+E + A+ + +
Sbjct: 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST 335
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 58.6 bits (143), Expect = 1e-10
Identities = 15/98 (15%), Positives = 28/98 (28%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G K G++ +A+ D + + ++K SL
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
VK + ++ A ++KV P N
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNV 112
Score = 56.7 bits (138), Expect = 4e-10
Identities = 14/98 (14%), Positives = 29/98 (29%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G V+ K+ A+ + P + + + + A +L L
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
K ++ A + + E+A K L+
Sbjct: 143 EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180
Score = 54.8 bits (133), Expect = 2e-09
Identities = 18/98 (18%), Positives = 32/98 (32%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G VK G E ++ P + L +++++ Y A + +
Sbjct: 49 GIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI 108
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
R A +L F++A L L PN +
Sbjct: 109 NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKV 146
Score = 40.5 bits (96), Expect = 2e-04
Identities = 11/74 (14%), Positives = 22/74 (29%)
Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
V++ ++ + K Y A D V A + +
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 223 ILKVLALEPNNKQA 236
+ + LA P+N +
Sbjct: 65 LERSLADAPDNVKV 78
Score = 40.1 bits (95), Expect = 2e-04
Identities = 13/65 (20%), Positives = 26/65 (40%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G L G++ EAI+ + +A+ P++ A + +M + A + +LD
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176
Query: 199 YVKAY 203
Sbjct: 177 ASVEL 181
Score = 26.6 bits (60), Expect = 6.6
Identities = 4/44 (9%), Positives = 14/44 (31%)
Query: 193 LKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ D+ Y+ + + + A + +V + +
Sbjct: 1 MGNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV 44
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 59.7 bits (145), Expect = 2e-10
Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 1/146 (0%)
Query: 91 AWQLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGE 150
W+ + + E ++ E+ + E+G K +KEG
Sbjct: 25 EWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAF-EEGLKRLKEGDLPV 83
Query: 151 AIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR 210
I AI P DA + + + +N +A L+L +KA A +
Sbjct: 84 TILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY 143
Query: 211 RSLNHFEDARKDILKVLALEPNNKQA 236
+ +H +DA + + + P K
Sbjct: 144 TNTSHQQDACEALKNWIKQNPKYKYL 169
Score = 54.3 bits (131), Expect = 1e-08
Identities = 16/98 (16%), Positives = 38/98 (38%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G G++ AI+ +N A+ P D + A T +L++
Sbjct: 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
++++ + +L + +A + L L+L+ ++
Sbjct: 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQ 317
Score = 50.4 bits (121), Expect = 2e-07
Identities = 10/98 (10%), Positives = 28/98 (28%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + AI ++ P++ A+ + + A +K +
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPK 165
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
Y + + + + D + ++ +A
Sbjct: 166 YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA 203
Score = 48.1 bits (115), Expect = 1e-06
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 2/100 (2%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
V E Y A D + F + A A+L +
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ R A + + E+A + + L ++P ++
Sbjct: 244 PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRS 283
Score = 43.9 bits (104), Expect = 3e-05
Identities = 12/110 (10%), Positives = 24/110 (21%), Gaps = 12/110 (10%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+A E I+ P N+ + + D + +
Sbjct: 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL 199
Query: 199 YVKAYQR------------RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
Y++A + F A L + P +
Sbjct: 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSL 249
Score = 42.4 bits (100), Expect = 8e-05
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 3/112 (2%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G L + EA+E Y A++ P N + + + Y A ++ +L L
Sbjct: 254 GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVL-ALEPNNKQAEIELAELNRKLNI 249
Q A + A + L ++ E +L L R N+
Sbjct: 314 SRNQQQVPHPAIS--GNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNL 363
Score = 29.3 bits (66), Expect = 1.3
Identities = 6/111 (5%), Positives = 20/111 (18%), Gaps = 8/111 (7%)
Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFAN--------RALCFLKMKNYVSAEADCTASLKLDN 197
++ A + + + ++E +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
R + + +P + +A L +
Sbjct: 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE 113
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 55.9 bits (136), Expect = 3e-10
Identities = 26/95 (27%), Positives = 43/95 (45%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN K+G + EAIE Y A++ P A + N + K +Y A +L+LD
Sbjct: 42 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233
+A+ A +++A + K L L+P +
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 53.2 bits (129), Expect = 3e-09
Identities = 27/98 (27%), Positives = 45/98 (45%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN K+G + EAIE Y A++ P A + N + K +Y A +L+LD
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+A+ A +++A + K L L+P + +A
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 35.1 bits (82), Expect = 0.006
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
N + K +Y A +L+LD +A+ A +++A + K L L+
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 231 PNNKQA 236
P + +A
Sbjct: 66 PRSAEA 71
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 57.3 bits (138), Expect = 2e-09
Identities = 11/98 (11%), Positives = 23/98 (23%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ A P V A+ ++ + L
Sbjct: 267 IGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPD 326
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L P+ A
Sbjct: 327 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 364
Score = 56.6 bits (136), Expect = 2e-09
Identities = 13/107 (12%), Positives = 26/107 (24%), Gaps = 2/107 (1%)
Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC 189
A+ S + A P V A+ ++
Sbjct: 226 VVAIASH--DGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283
Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ L V A +++L + + + L P+ A
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVA 330
Score = 56.6 bits (136), Expect = 3e-09
Identities = 12/107 (11%), Positives = 24/107 (22%), Gaps = 2/107 (1%)
Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC 189
A+ S + A P V A+ ++
Sbjct: 599 VVAIASN--IGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVL 656
Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ L V A +++L + + + L A
Sbjct: 657 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVA 703
Score = 56.2 bits (135), Expect = 4e-09
Identities = 12/100 (12%), Positives = 24/100 (24%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
G + A P V A+ ++ + L
Sbjct: 299 SHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 358
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L P+ A
Sbjct: 359 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 398
Score = 53.9 bits (129), Expect = 2e-08
Identities = 11/109 (10%), Positives = 24/109 (22%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ P V A+ ++ + L
Sbjct: 436 DGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPD 495
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
V A +++L + + + L P+ A + L
Sbjct: 496 QVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 544
Score = 53.1 bits (127), Expect = 4e-08
Identities = 11/100 (11%), Positives = 23/100 (23%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
+ A P V A+ ++ + L
Sbjct: 638 SHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 697
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L P+ A
Sbjct: 698 QEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVA 737
Score = 52.3 bits (125), Expect = 6e-08
Identities = 11/98 (11%), Positives = 23/98 (23%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + A V A+ ++ + L
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPA 631
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L P+ A
Sbjct: 632 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVA 669
Score = 52.3 bits (125), Expect = 7e-08
Identities = 11/91 (12%), Positives = 23/91 (25%)
Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
+ A P V A+ ++ + L V A
Sbjct: 206 ETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIAS 265
Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+++L + + + L P+ A
Sbjct: 266 NIGGKQALETVQRLLPVLCQAHGLTPDQVVA 296
Score = 50.8 bits (121), Expect = 2e-07
Identities = 13/109 (11%), Positives = 25/109 (22%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + A P V A+ ++ + L
Sbjct: 538 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQV 597
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
V A +++L + + + L P A + L
Sbjct: 598 QVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQAL 646
Score = 49.6 bits (118), Expect = 5e-07
Identities = 11/98 (11%), Positives = 22/98 (22%), Gaps = 1/98 (1%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ A P V A+ ++ + L
Sbjct: 335 DGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A ++L + + + L P+ A
Sbjct: 395 QVVAIASNGGK-QALETVQRLLPVLCQAHGLTPDQVVA 431
Score = 49.3 bits (117), Expect = 6e-07
Identities = 11/91 (12%), Positives = 23/91 (25%)
Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
+ A P V A+ ++ + L V A
Sbjct: 409 ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIAS 468
Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+++L + + + L P+ A
Sbjct: 469 HDGGKQALETVQQLLPVLCQAHGLTPDQVVA 499
Score = 49.3 bits (117), Expect = 7e-07
Identities = 11/98 (11%), Positives = 22/98 (22%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + A V A+ ++ + L
Sbjct: 674 GGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPD 733
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L P A
Sbjct: 734 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVA 771
Score = 48.5 bits (115), Expect = 1e-06
Identities = 11/98 (11%), Positives = 23/98 (23%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ + A P V A+ + + L
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPD 529
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L P+ A
Sbjct: 530 QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567
Score = 46.6 bits (110), Expect = 6e-06
Identities = 13/92 (14%), Positives = 26/92 (28%), Gaps = 5/92 (5%)
Query: 150 EAIEKYNVAIQTY-----PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQ 204
EA+ A+ P V A+ ++ + L V A
Sbjct: 171 EAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIA 230
Query: 205 RRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+++L + + + L P+ A
Sbjct: 231 SHDGGKQALETMQRLLPVLCQAHGLPPDQVVA 262
Score = 45.0 bits (106), Expect = 2e-05
Identities = 10/91 (10%), Positives = 21/91 (23%)
Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
+ A P V A+ ++ + L V A
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIAS 774
Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+++L + + + L A
Sbjct: 775 NIGGKQALETVQRLLPVLCQDHGLTLAQVVA 805
Score = 38.1 bits (88), Expect = 0.003
Identities = 11/99 (11%), Positives = 22/99 (22%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
G + A P V A+ ++ L
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
V A +++L + + + L + A
Sbjct: 801 AQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVA 839
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 54.1 bits (129), Expect = 3e-09
Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 23/145 (15%)
Query: 126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP------------HDAVFFANRA 173
L + A + + + G++ EA A++ DA A A
Sbjct: 5 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 64
Query: 174 LCFLKMKNYVSAEADCTASLKLDN-----------TYVKAYQRRAAARRSLNHFEDARKD 222
++++ A +L N ++ A RA A L +A +
Sbjct: 65 EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 124
Query: 223 ILKVLALEPNNKQAEIELAELNRKL 247
KV+ + K +
Sbjct: 125 FKKVVEMIEERKGETPGKERMMEVA 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 53.4 bits (128), Expect = 3e-09
Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 13/134 (9%)
Query: 120 DVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM 179
++ + L+ +Y + G + +A + +D+ FF C M
Sbjct: 15 EISSDTLE----QLY--SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAM 68
Query: 180 KNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN------ 233
Y A + +D + A +A + L N
Sbjct: 69 GQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128
Query: 234 -KQAEIELAELNRK 246
+ L + K
Sbjct: 129 STRVSSMLEAIKLK 142
Score = 42.2 bits (99), Expect = 3e-05
Identities = 13/103 (12%), Positives = 29/103 (28%)
Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR 205
G G + + + A + Y A A LD+ + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 206 RAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
A R+++ ++ A ++ + AE +
Sbjct: 61 LGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 51.3 bits (123), Expect = 1e-08
Identities = 15/96 (15%), Positives = 32/96 (33%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
E+G ++K EA + Q P + + L + + A + LD
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232
+ + A + + ++ A + L +P
Sbjct: 82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
Score = 38.6 bits (90), Expect = 3e-04
Identities = 12/71 (16%), Positives = 22/71 (30%)
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
L LK+ N A A + + +A++ + A + L+
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD 81
Query: 231 PNNKQAEIELA 241
P + LA
Sbjct: 82 PKDIAVHAALA 92
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 54.5 bits (131), Expect = 1e-08
Identities = 13/96 (13%), Positives = 29/96 (30%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
+ EG+ +AI Y A + + + + + +++ N + A +S L
Sbjct: 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ 472
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233
+ + + A L L
Sbjct: 473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508
Score = 52.5 bits (126), Expect = 6e-08
Identities = 8/99 (8%), Positives = 27/99 (27%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
+ + L ++ + + ++ P++ + + +
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP 370
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ +N +AR+ K ++P A
Sbjct: 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA 409
Score = 52.1 bits (125), Expect = 6e-08
Identities = 17/110 (15%), Positives = 32/110 (29%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G + K EA ++ + P + A F + A + T + +L
Sbjct: 380 GIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
Y L + A + + AL + EL + +
Sbjct: 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS 489
Score = 52.1 bits (125), Expect = 6e-08
Identities = 14/98 (14%), Positives = 29/98 (29%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
L + G+ + N + +P AV + + +L + A + S +D
Sbjct: 346 LASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ 405
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ A+ A + + A L
Sbjct: 406 FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443
Score = 51.8 bits (124), Expect = 1e-07
Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 7/107 (6%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTY-------PHDAVFFANRALCFLKMKNYVSAEADC 189
E G + AI + A+ A +AN + K+K Y +A
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDAL 539
Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
L L + A A + + LA+ PN A
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA 586
Score = 47.1 bits (112), Expect = 3e-06
Identities = 16/71 (22%), Positives = 24/71 (33%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G+ K + AI+ N + +DA AL +L K A SL +
Sbjct: 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582
Query: 199 YVKAYQRRAAA 209
+ A A
Sbjct: 583 EIMASDLLKRA 593
Score = 44.4 bits (105), Expect = 2e-05
Identities = 16/159 (10%), Positives = 51/159 (32%), Gaps = 4/159 (2%)
Query: 93 QLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAI 152
+L++ L+ E + +++ + ++ ++ +++ +G + A
Sbjct: 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCY-LRGQVYTNLSNFDRAK 220
Query: 153 EKYNVAIQTYPHDAVFFANRALCFLKMKNY---VSAEADCTASLKLDNTYVKAYQRRAAA 209
E Y A+ F L + + + + + K D ++++
Sbjct: 221 ECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN 280
Query: 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ S +D L + + + A+ +
Sbjct: 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS 319
Score = 38.7 bits (90), Expect = 0.001
Identities = 14/108 (12%), Positives = 31/108 (28%), Gaps = 1/108 (0%)
Query: 130 ASAVYSKEQGNKLVKEGKWGEAIEK-YNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD 188
A + L + +W ++ Y+ + L ++ + D
Sbjct: 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293
Query: 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+S+ +A + F D K+L ++P N
Sbjct: 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDV 341
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 50.5 bits (122), Expect = 2e-08
Identities = 29/98 (29%), Positives = 48/98 (48%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN K+G + EAIE Y A++ P++A + N + K +Y A +L+LD
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+A+ A +++A + K L L+PNN +A
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 41.6 bits (99), Expect = 3e-05
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN K+G + EAIE Y A++ P++A + N + K +Y A +L+LD
Sbjct: 50 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Query: 199 YVKAYQRRAAARRSL 213
+A Q A++
Sbjct: 110 NAEAKQNLGNAKQKQ 124
Score = 34.7 bits (81), Expect = 0.007
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
+ A + N + K +Y A +L+LD +A+ A +++A +
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 223 ILKVLALEPNNKQA 236
K L L+PNN +A
Sbjct: 66 YQKALELDPNNAEA 79
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 52.7 bits (127), Expect = 3e-08
Identities = 14/81 (17%), Positives = 28/81 (34%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G+ K K+ EA++ + A+ P +A ++ M N+ +A +L L
Sbjct: 243 GHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302
Query: 199 YVKAYQRRAAARRSLNHFEDA 219
+ +A
Sbjct: 303 DTFSVTMLGHCIEMYIGDSEA 323
Score = 50.8 bits (122), Expect = 1e-07
Identities = 15/99 (15%), Positives = 26/99 (26%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
G+ E + +A+ Y A Q + L + N AE + +L +
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP 190
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
++ A K L L
Sbjct: 191 EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE 229
Score = 50.4 bits (121), Expect = 2e-07
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 9/109 (8%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQ---------TYPHDAVFFANRALCFLKMKNYVSAEA 187
E G + G+W A + + A++ T N K+K Y A
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257
Query: 188 DCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+L L Y + +FE+A L L ++ +
Sbjct: 258 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306
Score = 45.0 bits (107), Expect = 9e-06
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 1/111 (0%)
Query: 139 GNKLVKEGKWGE-AIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
G + G E A + A + F + A A + +L
Sbjct: 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK 156
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
N+ + A + + L++ P + E+ + +
Sbjct: 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207
Score = 45.0 bits (107), Expect = 9e-06
Identities = 11/100 (11%), Positives = 28/100 (28%), Gaps = 1/100 (1%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
+ + + +V ++ P A +++ + L
Sbjct: 28 LAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP 87
Query: 198 TYVKAYQRRAAARRSL-NHFEDARKDILKVLALEPNNKQA 236
+ ++ + + E AR+ + K LE A
Sbjct: 88 SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA 127
Score = 39.2 bits (92), Expect = 8e-04
Identities = 8/87 (9%), Positives = 24/87 (27%)
Query: 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209
+ ++ + + A ++ + ++ D +
Sbjct: 6 PSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGT 65
Query: 210 RRSLNHFEDARKDILKVLALEPNNKQA 236
LN + K++ L P+N +
Sbjct: 66 LVELNKANELFYLSHKLVDLYPSNPVS 92
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 51.4 bits (124), Expect = 5e-08
Identities = 18/109 (16%), Positives = 33/109 (30%), Gaps = 11/109 (10%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD-- 196
G +L G++ A+ + A++ P D A LK+ A + +
Sbjct: 12 GVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR 71
Query: 197 ---------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
YV Y++ R + E A + + P
Sbjct: 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL 120
Score = 51.0 bits (123), Expect = 6e-08
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 1/101 (0%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
++ ++ +G +A+ A + P A R L + + AEA +L L
Sbjct: 88 RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL 147
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
++ + A S+ ++A K L P +
Sbjct: 148 ED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187
Score = 49.8 bits (120), Expect = 2e-07
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 5/96 (5%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G G+ +A A+ + A +L M A A +L+
Sbjct: 125 GLVYALLGERDKAEASLKQALALEDTPEIRS-ALAELYLSMGRLDEALAQYAKALEQAPK 183
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK 234
+ R A+A E+A + ALE ++
Sbjct: 184 DLDLRVRYASALLLKGKAEEA----ARAAALEHHHH 215
Score = 34.0 bits (79), Expect = 0.027
Identities = 10/66 (15%), Positives = 21/66 (31%)
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
+ + Y +A +LK + +A A + L A ++ ++A
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART 69
Query: 231 PNNKQA 236
P
Sbjct: 70 PRYLGG 75
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 51.2 bits (122), Expect = 1e-07
Identities = 18/119 (15%), Positives = 34/119 (28%), Gaps = 3/119 (2%)
Query: 133 VYSKEQGNKLVKEGKWGEAIEKYNVAIQ---TYPHDAVFFANRALCFLKMKNYVSAEADC 189
Y N +A+ Y A + + NRA ++Y A
Sbjct: 222 AYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGF 281
Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ + LD + + QR L+ + K + + + A L +
Sbjct: 282 SQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKLQSMLGSLRPAHLGPCGD 340
Score = 44.2 bits (104), Expect = 3e-05
Identities = 16/131 (12%), Positives = 45/131 (34%), Gaps = 11/131 (8%)
Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFL--------KMK 180
++ + + + +++ + +A+Q D + +L K
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK 235
Query: 181 NYVSAEADCTASLKLD---NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE 237
A + + K+D ++ + RA + + +A + + AL+P + +
Sbjct: 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295
Query: 238 IELAELNRKLN 248
+L L+
Sbjct: 296 QREQQLLEFLS 306
Score = 41.5 bits (97), Expect = 2e-04
Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 8/95 (8%)
Query: 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQR---- 205
EA + A++ P + + K + SA + +L V
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180
Query: 206 ----RAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ H D+ + + ++ + ++
Sbjct: 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRS 215
Score = 31.9 bits (72), Expect = 0.19
Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 3/120 (2%)
Query: 131 SAVYSKEQGNKLVKEGKWGEAIEK-YNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADC 189
++ + E+ K +++ Y + +V A R ++ +
Sbjct: 33 GSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ-EEMEKTLQQM 91
Query: 190 TASLKLDNTYVKAYQRRAAARRSL-NHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
L +A + A ++ +A + K + LEP +A +L E+ K
Sbjct: 92 EEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG 151
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB:
1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K*
1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K*
1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Length = 145
Score = 48.8 bits (117), Expect = 1e-07
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 12/69 (17%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
I DA+ A +++ G+ V V+N+ + G E +
Sbjct: 9 DVIVDARDCIMGRVASQVAEQA------------LDGETVAVVNAERAVITGREEQIVEK 56
Query: 77 FHHTGYPGG 85
+ G
Sbjct: 57 YEKRVDIGN 65
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 48.4 bits (115), Expect = 9e-07
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 4/110 (3%)
Query: 141 KLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN----YVSAEADCTASLKLD 196
+L AI+ AI+ P + AL KM+ E +L+
Sbjct: 184 RLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA 243
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
+ A R + + A + + K L PNN ++ R
Sbjct: 244 PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
Score = 43.4 bits (102), Expect = 4e-05
Identities = 26/168 (15%), Positives = 54/168 (32%), Gaps = 15/168 (8%)
Query: 90 LAWQLHEIDPTLDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGK-- 147
AW + + L +DK + + RI S E+G +K G
Sbjct: 100 YAWVYYHMG-RLSDVQIYVDKV-----KHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQ 153
Query: 148 WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAE---ADCTASLKLDNTYVKAYQ 204
A + A++ P + F + A+ ++ N+ ++ +++L+
Sbjct: 154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213
Query: 205 RRAAA----RRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
A R + K + + L P A+ R+ +
Sbjct: 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261
Score = 39.5 bits (92), Expect = 8e-04
Identities = 15/129 (11%), Positives = 31/129 (24%), Gaps = 19/129 (14%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ + GE + A++ P + A + + A +L+
Sbjct: 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279
Query: 199 YVKAY-------------------QRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIE 239
+ R+ L A + K N +
Sbjct: 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339
Query: 240 LAELNRKLN 248
LA L+ +
Sbjct: 340 LASLHALAD 348
Score = 38.0 bits (88), Expect = 0.002
Identities = 16/134 (11%), Positives = 36/134 (26%), Gaps = 6/134 (4%)
Query: 134 YSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASL 193
K G A+ A + + + A Y AE
Sbjct: 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361
Query: 194 KLDNTYVKAYQRR----AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR--KL 247
+ T V + + A ++ + + +++ E +L + K+
Sbjct: 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKM 421
Query: 248 NIPLSPIKVDFLHN 261
+ + + LH
Sbjct: 422 RLSKNGADSEALHV 435
Score = 30.7 bits (69), Expect = 0.55
Identities = 12/95 (12%), Positives = 24/95 (25%), Gaps = 10/95 (10%)
Query: 142 LVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVK 201
L + +AI + ++ K K + L + +
Sbjct: 382 LYQMKCEDKAIHHFIEGVKINQKSRE----------KEKMKDKLQKIAKMRLSKNGADSE 431
Query: 202 AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
A A + + A +D + L A
Sbjct: 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 47.4 bits (112), Expect = 2e-06
Identities = 15/108 (13%), Positives = 33/108 (30%), Gaps = 2/108 (1%)
Query: 142 LVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKM--KNYVSAEADCTASLKLDNTY 199
L+K + A ++ + A L + A +
Sbjct: 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT 199
Query: 200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
+ +AA + +E A + + L + + + I L L++ L
Sbjct: 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL 247
Score = 47.0 bits (111), Expect = 2e-06
Identities = 12/102 (11%), Positives = 26/102 (25%)
Query: 145 EGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQ 204
K +A + + +A C + + +AE +L D+ + +
Sbjct: 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238
Query: 205 RRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
+ L + L L + E
Sbjct: 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKEND 280
Score = 35.5 bits (81), Expect = 0.013
Identities = 12/105 (11%), Positives = 35/105 (33%), Gaps = 7/105 (6%)
Query: 142 LVKEGKWGEAIEKYN--VAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTY 199
L + + + + ++ + F A + +N +A L+
Sbjct: 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMA 134
Query: 200 VKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244
+ L+ + ARK++ K+ + + ++ A ++
Sbjct: 135 MTVQ-----ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVS 174
Score = 35.1 bits (80), Expect = 0.016
Identities = 18/188 (9%), Positives = 42/188 (22%), Gaps = 19/188 (10%)
Query: 63 HIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDKACEELDKQDSDEDEESDVE 122
++A Y + P + + + D ELD++ S + ++
Sbjct: 44 YLAQRKYG-VVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN-- 100
Query: 123 EEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNY 182
+ + + A+ + A LK+
Sbjct: 101 ---------TTFLLMAASIYFYDQNPDAALRTLHQGDSLECM-----AMTVQILLKLDRL 146
Query: 183 VSAEADCTASLKL--DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240
A + D T + + +DA ++
Sbjct: 147 DLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ 206
Query: 241 AELNRKLN 248
A +
Sbjct: 207 AACHMAQG 214
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 45.9 bits (109), Expect = 2e-06
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 12/70 (17%)
Query: 31 AKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTL 90
A V++K L G ++V+ + + + G ++ + +H
Sbjct: 14 ASVVAKQLLN------------GQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKT 61
Query: 91 AWQLHEIDPT 100
H P+
Sbjct: 62 RGPFHFRAPS 71
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 45.7 bits (108), Expect = 3e-06
Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 12/89 (13%)
Query: 12 TFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEW 71
+ DA+ A +++K L G V+V+ I + G
Sbjct: 6 GVCAKRVVVDARHHMLGRLASIVAKELLN------------GQRVVVVRCEEICMSGGLV 53
Query: 72 KKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
+++ + + +H P
Sbjct: 54 RQKMKYLRFLRKRMNTKPSHGPIHFRAPA 82
>1j3a_A 50S ribosomal protein L13P; rRNA binding, ribosomal assembly,
ribosome; 1.60A {Pyrococcus horikoshii} SCOP: c.21.1.1
Length = 142
Score = 44.1 bits (105), Expect = 5e-06
Identities = 7/70 (10%), Positives = 20/70 (28%), Gaps = 12/70 (17%)
Query: 31 AKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTL 90
A ++K L G+ V+++N+ + G + + ++
Sbjct: 15 ASRVAKMLLE------------GEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 91 AWQLHEIDPT 100
+
Sbjct: 63 RGPFYPKRSD 72
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 44.9 bits (106), Expect = 6e-06
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 12/84 (14%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
+ D K A V++K L G ++V+ + + + G ++ +
Sbjct: 6 VVVIDGKGHLVGRLASVVAKQLLN------------GQKIVVVRAEELNISGEFFRNKLK 53
Query: 77 FHHTGYPGGVSWTLAWQLHEIDPT 100
+H H P+
Sbjct: 54 YHDFLRKATAFNKTRGPFHFRAPS 77
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 43.0 bits (102), Expect = 7e-06
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Query: 163 PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKD 222
P D A LK N A A ++ D YV Y L+ +DA
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 223 ILKVLALEPN--NKQAEIELAELNRKL 247
+ + + ++ EL + K
Sbjct: 64 YAQGIEVAREEGTQKDLSELQDAKLKA 90
Score = 36.1 bits (84), Expect = 0.002
Identities = 5/65 (7%), Positives = 19/65 (29%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ +K A+ + ++T P + + + ++ A +++
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73
Query: 199 YVKAY 203
Sbjct: 74 EGTQK 78
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 44.2 bits (104), Expect = 1e-05
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 12/84 (14%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
+ DAK A ++K L G ++V+ + I + G ++ R
Sbjct: 5 LVVIDAKGHLLGRLASYVAKELLS------------GQRIVVVRTEAINISGSLFRNRVK 52
Query: 77 FHHTGYPGGVSWTLAWQLHEIDPT 100
F H P+
Sbjct: 53 FSEFLNKWMNHNPRRGVQHFRAPS 76
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 42.0 bits (99), Expect = 1e-05
Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHD-AVFFANRALCFLKMKNYVSAEADCTASLKL 195
+ +L+ +G A++ +QT P + + K+ ++ A + ++++L
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64
Query: 196 DNTYVKAYQRR 206
+ R+
Sbjct: 65 NPDSPALQARK 75
Score = 33.9 bits (78), Expect = 0.010
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRAL 174
GN K G W +A+ Y AI+ P A + +
Sbjct: 42 GNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMV 77
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 40.8 bits (97), Expect = 3e-05
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
GN K+G + EAIE Y A++ P++A + N + K +Y A +L+LD
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 199 YVKAY 203
+A
Sbjct: 76 NAEAK 80
Score = 31.6 bits (73), Expect = 0.052
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
N + K +Y A +L+LD +A+ A +++A + K L L+
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 231 PNNKQA 236
PNN +A
Sbjct: 74 PNNAEA 79
Score = 25.8 bits (58), Expect = 5.4
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 191 ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
++ N +A+ A +++A + K L L+PNN +A
Sbjct: 1 GAMDPGN-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 41.2 bits (97), Expect = 3e-05
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 146 GKWGEAIEKYNVAIQ---TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKA 202
G +A+ Y AI A + F + Y AEA +K +
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63
Query: 203 YQRRAAARRSLNHFEDARKDILKVLALEPNNK 234
A +L +E + +LK++A +++
Sbjct: 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95
Score = 37.8 bits (88), Expect = 6e-04
Identities = 8/69 (11%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL--D 196
G+ G++ +A ++ +P+ A+ + Y + D
Sbjct: 34 GSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93
Query: 197 NTYVKAYQR 205
+ +++Y++
Sbjct: 94 DETIQSYKQ 102
Score = 26.2 bits (58), Expect = 6.6
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
+ Y + R+L + A + + PN++ + A
Sbjct: 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 43.5 bits (102), Expect = 3e-05
Identities = 11/87 (12%), Positives = 30/87 (34%)
Query: 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209
E + I+ P + + +R + +++ L D A+Q R
Sbjct: 150 EEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWV 209
Query: 210 RRSLNHFEDARKDILKVLALEPNNKQA 236
+ +++ + + ++L + N
Sbjct: 210 IQEFKLWDNELQYVDQLLKEDVRNNSV 236
Score = 38.5 bits (89), Expect = 0.001
Identities = 13/104 (12%), Positives = 33/104 (31%), Gaps = 6/104 (5%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ + +E + + + +R + K + + LK D
Sbjct: 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR 232
Query: 199 YVKAYQRRAAARRSLNHFEDAR------KDILKVLALEPNNKQA 236
+ +R + + D + L+++ L P+N+ A
Sbjct: 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA 276
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 41.0 bits (96), Expect = 1e-04
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 3/104 (2%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
++ ++ + ++ I+ P ++ +A +L +Y ++ +L+L
Sbjct: 14 RDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL 73
Query: 196 DNTYVKAYQRRAAARRSLN---HFEDARKDILKVLALEPNNKQA 236
+ Y A R I K LAL+ N A
Sbjct: 74 RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117
Score = 37.9 bits (88), Expect = 0.001
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 3/110 (2%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVS---AEADCTASLKL 195
G + + + ++ Y A+Q +A +A A + A +L L
Sbjct: 51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALAL 110
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNR 245
D+ + A A+ ++ A + KV+ L + +N
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 41.2 bits (96), Expect = 2e-04
Identities = 11/106 (10%), Positives = 29/106 (27%), Gaps = 3/106 (2%)
Query: 133 VYSKEQGNKLVKEGKWGEAIEKYN--VAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190
V + E + + + V + + ++ + +A+ L +
Sbjct: 242 VDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAIN 301
Query: 191 ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
+ L+ +++ Y +A L L P
Sbjct: 302 TGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346
Score = 37.8 bits (87), Expect = 0.003
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 13/108 (12%)
Query: 138 QGNKLVKEG---KWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA--- 191
Q + + G A E +Q+ P A +AL + + + A
Sbjct: 202 QAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALN 261
Query: 192 -------SLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPN 232
+L N YQ +A + +++ + I + LE +
Sbjct: 262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS 309
Score = 27.0 bits (59), Expect = 6.8
Identities = 12/95 (12%), Positives = 28/95 (29%), Gaps = 1/95 (1%)
Query: 109 DKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF 168
+KQ + + E D + ++ + + + +GK E+ + N I +
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLN 312
Query: 169 FANRALCFLKMKNYVSAEADCTASLKLDNTYVKAY 203
+ + A + L Y
Sbjct: 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 38.0 bits (88), Expect = 0.001
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA--DCTASLK 194
+Q ++L+++G+ +A+ +A C L+ K + A+
Sbjct: 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY 70
Query: 195 LDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAE 242
DN+Y + +++ E R + + LA P+N + ELA
Sbjct: 71 QDNSYKSLIAKLELHQQAAESPELKR--LEQELAANPDNFELACELAV 116
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 38.1 bits (88), Expect = 0.001
Identities = 9/86 (10%), Positives = 25/86 (29%), Gaps = 16/86 (18%)
Query: 17 WHIYDAKWQNPIES--AKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKR 74
+ D + + A +++K + G V+V+ I + G ++ +
Sbjct: 6 VLVLDGR--GHLLGRLAAIVAKQV------------LLGRKVVVVRCEGINISGNFYRNK 51
Query: 75 AYFHHTGYPGGVSWTLAWQLHEIDPT 100
+ + P+
Sbjct: 52 LNYLAFLRKRMNTNPSRGPYDFRAPS 77
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 35.5 bits (82), Expect = 0.011
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 4/109 (3%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA-DCTASLKL 195
+Q +L++E + +A+ A Q + A + + AEA T L+
Sbjct: 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD 181
Query: 196 DNTYVKAYQRRAA-ARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243
+T + + ++ + E + + +A P + +LA
Sbjct: 182 QDTRYQGLVAQIELLXQAADTPEIQ--QLQQQVAENPEDAALATQLALQ 228
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.013
Identities = 54/349 (15%), Positives = 97/349 (27%), Gaps = 119/349 (34%)
Query: 5 ERVKQWNTFARIWHIYDAKWQN--PIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSR 62
+V+ F I+ W N S + + + LQ I DH S
Sbjct: 174 YKVQCKMDF----KIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH-----SS 221
Query: 63 HIALPGYEWK--KRAYFHHTGYPGG------VSWTLAWQLHEIDPTLDKACEEL----DK 110
+I L + + R Y V + + +C+ L K
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-----QNAKAWN-AFNLSCKILLTTRFK 275
Query: 111 QDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFA 170
Q +D + LD S + ++ L+ K+ + Q P + +
Sbjct: 276 QVTDFLSAATTTHISLDHH-SMTLTPDEVKSLL--LKY------LDCRPQDLPREVLTTN 326
Query: 171 NRALCFL--KMKNYVSAEADCTASLKLDNT-YVKAYQRRAAARRSLNHFEDA-------- 219
R L + +++ ++ DN +V + SLN E A
Sbjct: 327 PRRLSIIAESIRDGLA---------TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 220 ----RKDI---LKVLA-----------------------LEPNNKQAEIEL--------- 240
+L+ +E K++ I +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 241 -----AELNRKL----NIP-------LSPIKVD---FLHNPYHLTRDQR 270
L+R + NIP L P +D + H +HL +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR,
tetratricopeptide repeat like, TPR-like, transport
protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 33.6 bits (76), Expect = 0.031
Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 22/129 (17%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAE----------AD 188
+ + + + + ++ P DA L++ + S
Sbjct: 9 ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK 68
Query: 189 CTASLKLDNTYVKAYQRRAAARRSL-----------NHFEDARKDILKVLALEPNNKQAE 237
+L +D +A A S ++F+ A + + + +P+N
Sbjct: 69 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128
Query: 238 IELAELNRK 246
L E+ K
Sbjct: 129 KSL-EMTAK 136
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 32.0 bits (73), Expect = 0.083
Identities = 21/126 (16%), Positives = 46/126 (36%), Gaps = 12/126 (9%)
Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRAL-----CFLKMKNYV 183
+A Y +K GK+ +A + + ++ YP+ + AL + +N+
Sbjct: 1 MARTAY--NVAFDALKNGKYDDASQLFLSFLELYPNGV--YTPNALYWLGESYYATRNFQ 56
Query: 184 SAEADCTASLKLDNTYVK---AYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIEL 240
AEA + T+ K + ++ +A++ + +V P + A +
Sbjct: 57 LAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116
Query: 241 AELNRK 246
L
Sbjct: 117 ERLQSI 122
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 32.5 bits (74), Expect = 0.15
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 13/157 (8%)
Query: 101 LDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160
L+K E + SD E D ++ L + ++ +G + + ++ AI+ + A
Sbjct: 72 LEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAES 131
Query: 161 TY------PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR---- 210
A FF + + MK + + ++ + R
Sbjct: 132 KLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191
Query: 211 ---RSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244
L +EDA K ++ KQ ++ L
Sbjct: 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLY 228
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 30.6 bits (69), Expect = 0.48
Identities = 14/131 (10%), Positives = 42/131 (32%), Gaps = 12/131 (9%)
Query: 124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD------AVFFANRALCFL 177
+ +A + ++ KL++ +A+ Y A + ++ A + +
Sbjct: 107 VENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV 166
Query: 178 KMKNYVSAEADCTASLKLDN------TYVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231
+ + + A A + T K + + + A+K + + ++
Sbjct: 167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPG 226
Query: 232 NNKQAEIELAE 242
+ + E
Sbjct: 227 FSGSEDCAALE 237
Score = 28.7 bits (64), Expect = 2.0
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 9/78 (11%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYP------HDAVFFANRALCFLKMKNYVSAEADCTAS 192
+ +A + Y + + H A F + ++ A +
Sbjct: 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKA 102
Query: 193 LKLDNTYVKAYQRRAAAR 210
+ YV+ AA
Sbjct: 103 SVM---YVENGTPDTAAM 117
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 30.3 bits (69), Expect = 0.55
Identities = 20/113 (17%), Positives = 38/113 (33%), Gaps = 10/113 (8%)
Query: 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFLKMKNY 182
AS + +G +L K G + + A+Q D + ++ + + +Y
Sbjct: 4 SMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 63
Query: 183 VSAEADCTASLKL-----DNTYV-KAYQRRAAARRSLNHFEDARKDILKVLAL 229
A L L D KA + L +F++A + L +
Sbjct: 64 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.75
Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 103 KACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKE--GKWGEAIEKYNVAIQ 160
K EE K+ + D S V E++ +E+ K ++E + E +EK I
Sbjct: 89 KWREEQRKRLQELDAASKVMEQEW---------REKAKKDLEEWNQRQSEQVEK--NKIN 137
Query: 161 TYPHDAVFFANR 172
D F+
Sbjct: 138 NRIADKAFYQQP 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 1.1
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 19/75 (25%)
Query: 176 FLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDA---RKDI--LKVLALE 230
FL YVS+ + + K Q L FE+ DI L L
Sbjct: 64 FL---GYVSSLVEPS----------KVGQFDQVLNLCLTEFENCYLEGNDIHAL-AAKLL 109
Query: 231 PNNKQAEIELAELNR 245
N ++ EL +
Sbjct: 110 QENDTTLVKTKELIK 124
Score = 30.0 bits (67), Expect = 1.1
Identities = 35/262 (13%), Positives = 72/262 (27%), Gaps = 121/262 (46%)
Query: 73 KRAYFHHTGYPGGVSWTLAWQLHE------IDPTLD------KACEELDKQDSDEDEESD 120
H G G ++ E + +D K +E+++ + S+
Sbjct: 1670 VNLTIHFGGEKGK-------RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSE 1722
Query: 121 VEEEDLDR----------IASAVYS--KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF 168
+ L + A + K +G P DA F
Sbjct: 1723 --KGLLSATQFTQPALTLMEKAAFEDLKSKGLI---------------------PADATF 1759
Query: 169 -------FANRALCFLKMKNYVSAEADCTASLKLDNTYVK-AYQR-----RAAARRSLNH 215
+A AL + AD + +++ V+ + R A R L
Sbjct: 1760 AGHSLGEYA--ALA---------SLAD---VMSIESL-VEVVFYRGMTMQVAVPRDELGR 1804
Query: 216 F-----------------EDARKDILKVLA------LEP-N----NKQ----AEIE-LAE 242
++A + +++ + +E N N+Q ++ L
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDT 1864
Query: 243 LNRKLN------IPLSPIKVDF 258
+ LN I + ++
Sbjct: 1865 VTNVLNFIKLQKIDIIELQKSL 1886
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 29.0 bits (65), Expect = 1.8
Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 13/145 (8%)
Query: 113 SDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVA------IQTYPHDA 166
++ E + ++ L + +G + ++ EAI Y A + A
Sbjct: 82 TELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKA 141
Query: 167 VFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAAR-------RSLNHFEDA 219
F A + MK + +L + + R + H++ A
Sbjct: 142 EFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKA 201
Query: 220 RKDILKVLALEPNNKQAEIELAELN 244
+ L L + + L
Sbjct: 202 LPHLEAALELAMDIQNDRFIAISLL 226
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A
{Rhodothermus marinus}
Length = 261
Score = 28.2 bits (63), Expect = 2.4
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 18/81 (22%)
Query: 112 DSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP-----HDA 166
S S +E + E+ + +GK+ AIE + DA
Sbjct: 6 GSGRLRHSSPQE---------AF--ERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADA 54
Query: 167 VFFANRALCFLKMKNYVSAEA 187
F+ A + + K Y+ A +
Sbjct: 55 QFYL--ARAYYQNKEYLLAAS 73
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 28.2 bits (64), Expect = 2.8
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 140 NKLVKEGKWGEAIEK 154
KL EG+ EA E
Sbjct: 44 LKLTSEGRLEEAYEV 58
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA;
HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP:
b.56.1.1 PDB: 1ytf_C*
Length = 79
Score = 26.1 bits (57), Expect = 3.5
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 102 DKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKW 148
D+ ELD D D E+ + + +Y K K +W
Sbjct: 9 DEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTK----ARW 51
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 27.6 bits (61), Expect = 3.8
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 140 NKLVKEGKWGEAIEKYNVAIQTYPHDA---VFFANRALCFLKMKNYVSAEADCTASLKLD 196
+ EG+ +A+E AI+ P DA F LC ++ A+ S+KL
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFI-ELLCI--DGDFERADEQLMQSIKLF 61
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDIL 224
Y A+ R L ARKD
Sbjct: 62 ----PEYLPGASQLRHLVKAAQARKDFA 85
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 26.7 bits (59), Expect = 5.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 213 LNHFEDARKDILKVLALEPNNKQA 236
L +E A K + +L EP N QA
Sbjct: 84 LKEYEKALKYVRGLLQTEPQNNQA 107
>1lln_A Antiviral protein 3; ribosome inactivating protein,
polynucleotide:adenosine, hydrolase; HET: MLY; 1.60A
{Phytolacca americana} SCOP: d.165.1.1
Length = 262
Score = 27.3 bits (59), Expect = 5.3
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNK 234
T +++ N Y++ Y + F D+ D + + +K
Sbjct: 60 TLAIRRGNLYLEGYSDIYNGKCRYRIFXDSESDAQETVCPGDKSK 104
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism;
HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP:
e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Length = 370
Score = 27.3 bits (61), Expect = 5.9
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 21/68 (30%)
Query: 223 ILKVLALEPNNKQAEIELAELNRKLNIPLSP----IKVDF-----------------LHN 261
L LALE +++Q EL L++P++ +K +HN
Sbjct: 282 TLVQLALEEHSQQEIERYIELYLCLDLPVTLEDIKLKDASREDILKVAKAATAEGETIHN 341
Query: 262 PYHLTRDQ 269
+++T D
Sbjct: 342 AFNVTADD 349
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 144
Score = 26.4 bits (58), Expect = 6.2
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 213 LNHFEDARKDILKVLALEPNNKQA 236
L + A++ + + E NNKQ
Sbjct: 90 LGEYSMAKRYVDTLFEHERNNKQV 113
>3on3_A Keto/oxoacid ferredoxin oxidoreductase, gamma SUB; structural
genomics, PSI-2, protein structure initiative; 2.19A
{Geobacter sulfurreducens}
Length = 183
Score = 26.4 bits (59), Expect = 7.8
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 43 KPIYHPLNDCGDHVIVMN 60
P+ +P D ++ +
Sbjct: 61 GPVDYPKATQCDALLALT 78
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 26.9 bits (60), Expect = 8.4
Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 8/98 (8%)
Query: 122 EEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANRALCFL 177
+ + +G +L G + + AIQ D + ++ +
Sbjct: 38 GSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF 97
Query: 178 KMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNH 215
+ +Y A L L R A +S +
Sbjct: 98 YLGDYNKAMQYHKHDLTL---AKSMNDRLGEA-KSSGN 131
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 26.8 bits (60), Expect = 8.5
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 24 WQNPIESAKVISKHLQGQHKPIYHPL 49
W N +++HL P Y L
Sbjct: 291 WSNAQNQGIAVARHLVDPTAPGYAEL 316
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function;
2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Length = 126
Score = 26.0 bits (57), Expect = 9.3
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 213 LNHFEDARKDILKVLALEPNNKQA 236
L +E A K + +L EP N QA
Sbjct: 87 LKEYEKALKYVRGLLQTEPQNNQA 110
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR,
scaffold, peroxisome, membrane fission, protein binding;
1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A
3uux_A
Length = 134
Score = 26.0 bits (57), Expect = 9.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 213 LNHFEDARKDILKVLALEPNNKQA 236
L + A++ + + E NNKQ
Sbjct: 91 LGEYSMAKRYVDTLFEHERNNKQV 114
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 26.6 bits (58), Expect = 10.0
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 232 NNKQAEIELAELNRKLNIPLSPI 254
+ A + K + +SPI
Sbjct: 238 SVLMAVDGAYKWGEKHGVTISPI 260
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.409
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,374,333
Number of extensions: 260715
Number of successful extensions: 1298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1050
Number of HSP's successfully gapped: 304
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)