RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6284
(270 letters)
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
[TaxId: 562]}
Length = 140
Score = 83.9 bits (207), Expect = 7e-21
Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 11 NTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYE 70
T R W++ DA + A +++ L+G+HK Y P D GD++IV+N+ +A+ G +
Sbjct: 9 ETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNK 68
Query: 71 WKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
+ Y+HHTG+ GG+ ++ P
Sbjct: 69 RTDKVYYHHTGHIGGIKQATFEEMIARRPE 98
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 142
Score = 82.7 bits (204), Expect = 2e-20
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 15 RIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKR 74
+ W + DA A +I+ ++G+H+P + P GD V+V+N+ +AL G + +
Sbjct: 10 QNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQVALTGKKLDDK 69
Query: 75 AYFHHTGYPGGVSWTLAWQLHEIDPT 100
Y +TGY GG+ A + P
Sbjct: 70 VYTRYTGYQGGLKTETAREALSKHPE 95
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
thermophilus [TaxId: 274]}
Length = 139
Score = 74.3 bits (182), Expect = 3e-17
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 15 RIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKR 74
W + DA+ + A I+ L+G+H+P + P GD V+V+N+ I + G + +++
Sbjct: 11 PRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKIRVTGKKLEQK 70
Query: 75 AYFHHTGYPGGVSWTLAWQLHEIDPT 100
Y ++GYPGG+ ++ P
Sbjct: 71 IYTRYSGYPGGLKKIPLEKMLATHPE 96
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 65.0 bits (157), Expect = 2e-13
Identities = 37/117 (31%), Positives = 59/117 (50%)
Query: 131 SAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCT 190
SA KEQGN+L K+ EA Y AI P AV++ NRALC+LKM+ A ADC
Sbjct: 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCR 62
Query: 191 ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
+L+LD VKA+ + + +++A ++ + +L + + ++
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI 119
Score = 31.9 bits (71), Expect = 0.047
Identities = 13/111 (11%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
G ++ + EAI A + F + L++ A+ S++
Sbjct: 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI-----AKKKRWNSIEERR 132
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ ++ R E ++ + ++ + A + K +
Sbjct: 133 IHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD 183
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 56.9 bits (136), Expect = 1e-10
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 15/137 (10%)
Query: 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTY---------------PHDAVFFAN 171
+++ A KE+G K GK+ +A+ +Y + F N
Sbjct: 10 EKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 69
Query: 172 RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231
A+C+LK++ Y A C +L LD+ K RR A+ +N FE A+ D KVL + P
Sbjct: 70 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129
Query: 232 NNKQAEIELAELNRKLN 248
NK A +++ +K
Sbjct: 130 QNKAARLQIFMCQKKAK 146
Score = 27.2 bits (59), Expect = 1.6
Identities = 5/42 (11%), Positives = 14/42 (33%)
Query: 146 GKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEA 187
++ A + ++ P + +C K K + +
Sbjct: 112 NEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 57.4 bits (137), Expect = 3e-10
Identities = 20/110 (18%), Positives = 42/110 (38%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
N L ++G EA + YN A++ P A N A + N A +L++
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ A+ A+ + ++A + + + P A + +++
Sbjct: 338 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 54.7 bits (130), Expect = 3e-09
Identities = 34/245 (13%), Positives = 70/245 (28%), Gaps = 6/245 (2%)
Query: 9 QWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPG 68
+ A + + + + +
Sbjct: 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 169
Query: 69 YEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDKACEEL-----DKQDSDEDEESDVEE 123
W + ++ + +DP A L + + D + +
Sbjct: 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRA 229
Query: 124 EDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYV 183
L + V+ ++G AI+ Y AI+ PH + N A + +
Sbjct: 230 LSLSPNHAVVHGN-LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 184 SAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAEL 243
AE +L+L T+ + A +R + E+A + K L + P A LA +
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Query: 244 NRKLN 248
++
Sbjct: 349 LQQQG 353
Score = 50.8 bits (120), Expect = 6e-08
Identities = 24/208 (11%), Positives = 56/208 (26%)
Query: 41 QHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
+ + + H + + I + ++
Sbjct: 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137
Query: 101 LDKACEELDKQDSDEDEESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQ 160
L E+ ++ + + AV G +G+ AI + A+
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197
Query: 161 TYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDAR 220
P+ + N + + + A A +L L + + A + A
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 257
Query: 221 KDILKVLALEPNNKQAEIELAELNRKLN 248
+ + L+P+ A LA ++
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKG 285
Score = 50.4 bits (119), Expect = 7e-08
Identities = 8/80 (10%), Positives = 23/80 (28%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
E ++ + G + A + P + + + + + T ++K +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 197 NTYVKAYQRRAAARRSLNHF 216
+AY +
Sbjct: 64 PLLAEAYSNLGNVYKERGQL 83
Score = 40.4 bits (93), Expect = 1e-04
Identities = 7/73 (9%), Positives = 20/73 (27%)
Query: 171 NRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALE 230
A + ++ +AE C + + ++ + + +
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63
Query: 231 PNNKQAEIELAEL 243
P +A L +
Sbjct: 64 PLLAEAYSNLGNV 76
Score = 30.4 bits (67), Expect = 0.19
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN 181
+ L ++GK EA+ Y AI+ P A ++N +M++
Sbjct: 346 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 159
Score = 55.1 bits (131), Expect = 4e-10
Identities = 38/113 (33%), Positives = 67/113 (59%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
K Q N K + AI+ Y+ AI+ P +A+++ NR+L +L+ + Y A D T +++L
Sbjct: 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL 73
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
D Y+K Y RRAA+ +L F A +D V+ ++P++K A+++ E N+ +
Sbjct: 74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVK 126
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 52.0 bits (123), Expect = 2e-09
Identities = 37/111 (33%), Positives = 61/111 (54%)
Query: 136 KEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKL 195
KE+GNK + G +A++ Y+ AI+ PH+ V ++NR+ + K +Y A D ++ L
Sbjct: 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 66
Query: 196 DNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRK 246
+ K Y R+AAA LN FE+A++ + L E NN Q + L + +
Sbjct: 67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 117
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl
isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Length = 153
Score = 51.5 bits (122), Expect = 7e-09
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 16/143 (11%)
Query: 122 EEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD---------------- 165
+ D +++ SA KE+GN+ K+ + EAI KY A+ + H
Sbjct: 7 DYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE 66
Query: 166 AVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILK 225
N A C+ K K+Y A + LK+D VKA + A E+A++++ K
Sbjct: 67 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 126
Query: 226 VLALEPNNKQAEIELAELNRKLN 248
+L PNN KL
Sbjct: 127 AASLNPNNLDIRNSYELCVNKLK 149
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 169
Score = 51.2 bits (121), Expect = 1e-08
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 114 DEDEESDVEEEDLDRIASAVYS-KEQGNKLVKEGKWGEAIEKYNVAIQTY---------- 162
D E++DV+ +D+D+I K GN K W AI+KY ++
Sbjct: 8 DFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDA 67
Query: 163 ------PHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHF 216
P N C LKM ++ A C +L++D + KA RRA + L +
Sbjct: 68 DGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY 127
Query: 217 EDARKDILKVLALEPNNKQAEIELAELNRKLN 248
+ A D+ K + P +K + EL ++ +K+
Sbjct: 128 DQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159
Score = 25.4 bits (54), Expect = 5.7
Identities = 8/45 (17%), Positives = 14/45 (31%)
Query: 142 LVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAE 186
++ +A+ A + P D A K+K E
Sbjct: 121 WQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 49.9 bits (118), Expect = 1e-08
Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 132 AVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTA 191
A+ KE GN K+ + A++ Y+ A + P + + N+A + + +Y C
Sbjct: 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
Query: 192 SLKLD-------NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244
++++ KAY R + ++DA K LA + + +
Sbjct: 64 AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK-KCQQAE 122
Query: 245 RKL 247
+ L
Sbjct: 123 KIL 125
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 51.6 bits (123), Expect = 2e-08
Identities = 18/96 (18%), Positives = 35/96 (36%)
Query: 138 QGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDN 197
Q + EG+ +A+E AI+ P DA ++ ++ A+ S+KL
Sbjct: 2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61
Query: 198 TYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN 233
Y+ + ++ +D + L N
Sbjct: 62 EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENE 97
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 49.7 bits (117), Expect = 4e-08
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 15/137 (10%)
Query: 127 DRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVF---------------FAN 171
+++ + KE+G KEGK+ +A+ +Y + +++ F N
Sbjct: 8 EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 67
Query: 172 RALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEP 231
A+C LK++ + +A C +L+LD+ K RR A ++N FE AR D KVL L P
Sbjct: 68 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP 127
Query: 232 NNKQAEIELAELNRKLN 248
NNK A+ +LA +++
Sbjct: 128 NNKAAKTQLAVCQQRIR 144
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 47.9 bits (113), Expect = 2e-07
Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 3/120 (2%)
Query: 129 IASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEAD 188
+ A+ +G + W A++ ++ + N + +KN AE
Sbjct: 2 LVEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPHSRICFNIGCMYTILKNMTEAEKA 58
Query: 189 CTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
T S+ D AY +R ++ A KD+ + L N+ + ++ L KL
Sbjct: 59 FTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLF 118
Score = 27.1 bits (59), Expect = 2.0
Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 1/101 (0%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
+ + + + + + I+ + +Q N A + K + + AE + +
Sbjct: 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAE 237
+ + +A + + L PN +Q
Sbjct: 151 SEPRHSKIDKAMECVWKQKLYEPVVIPVGRL-FRPNERQVA 190
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 44.8 bits (105), Expect = 6e-06
Identities = 13/125 (10%), Positives = 34/125 (27%), Gaps = 2/125 (1%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G K+ ++ + + + AE+ + +L +
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQHC--LVHLGDIARYRNQTSQAESYYRHAAQLVPS 184
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIKVDF 258
+ Y + A S + +A++ A L + K +K +
Sbjct: 185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESRDEVKTKW 244
Query: 259 LHNPY 263
+ +
Sbjct: 245 GVSDF 249
Score = 26.7 bits (58), Expect = 3.2
Identities = 8/95 (8%), Positives = 22/95 (23%), Gaps = 5/95 (5%)
Query: 150 EAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNTYVKAYQRRAAA 209
++ + A A + + L D Y +
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDL 60
Query: 210 RRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244
+ F++ + N ++E++
Sbjct: 61 WN--HAFKNQITTLQGQAKNRANPNRSEVQANLSL 93
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR,
middle domain {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 179
Score = 41.4 bits (96), Expect = 3e-05
Identities = 14/127 (11%), Positives = 35/127 (27%), Gaps = 15/127 (11%)
Query: 122 EEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN 181
DL R + G G++ +A + A++ + + +
Sbjct: 4 NTCDLGRFVAEK---TAGVHAAAAGRFEQASRHLSAALREWRGPV------------LDD 48
Query: 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
+ + L V A+ +A A + ++ + P + +L
Sbjct: 49 LRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLI 108
Query: 242 ELNRKLN 248
+
Sbjct: 109 TAYYLSD 115
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 41.7 bits (96), Expect = 4e-05
Identities = 17/108 (15%), Positives = 35/108 (32%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
E+G + ++EG A+ + A+Q P + + + + A + L+L
Sbjct: 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELN 244
A A + + + A + + L P E
Sbjct: 84 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 131
Score = 36.7 bits (83), Expect = 0.002
Identities = 16/109 (14%), Positives = 43/109 (39%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
G G++ +A++ + A+ P+D + + A A +L+L
Sbjct: 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG 238
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKL 247
Y+++ + +L +A + L+ L ++ ++ E ++ +
Sbjct: 239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 287
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium
tepidum [TaxId: 1097]}
Length = 156
Score = 39.3 bits (90), Expect = 1e-04
Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 23/150 (15%)
Query: 126 LDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYP------------HDAVFFANRA 173
L + A + + + G++ EA A++ DA A A
Sbjct: 3 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLA 62
Query: 174 LCFLKMKNYVSAEADCTASLKLDNTYVKAYQ-----------RRAAARRSLNHFEDARKD 222
++++ A +L N + Q RA A L +A +
Sbjct: 63 EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE 122
Query: 223 ILKVLALEPNNKQAEIELAELNRKLNIPLS 252
KV+ + K + ++
Sbjct: 123 FKKVVEMIEERKGETPGKERMMEVAIDRIA 152
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 38.2 bits (88), Expect = 2e-04
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 5/114 (4%)
Query: 140 NKLVKEGKWGEAIEKYNVAIQTYP--HDAVFFANRALCFLKMKNYVSAEADCTASLK--- 194
N+LV + +K+ F L + + + L
Sbjct: 7 NELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG 66
Query: 195 LDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLN 248
A L +E A K + +L EP N QA+ +++ +
Sbjct: 67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK 120
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 37.2 bits (86), Expect = 5e-04
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 16/84 (19%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKKRAY 76
I DA+ A +++ G+ V V+N+ + G E +
Sbjct: 6 DVIVDARDCIMGRVASQVAEQA------------LDGETVAVVNAERAVITGREEQIVEK 53
Query: 77 FHHTGYPGGVSWTLAWQLHEIDPT 100
+ G + P
Sbjct: 54 YEKRVDIGN----DNGYFYPKRPD 73
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase
alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 37.6 bits (86), Expect = 0.001
Identities = 16/127 (12%), Positives = 40/127 (31%), Gaps = 8/127 (6%)
Query: 115 EDEESDVEEEDLDRIASAVYSKEQ-------GNKLVKEGKWGEAIEKYNVAIQTYPHDAV 167
D + + + + + +YS + L ++ + A + AI+ +
Sbjct: 19 ADIDPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT 78
Query: 168 FFANRALCFLKM-KNYVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKV 226
+ R + + K+ TA ++ + + R L + I +
Sbjct: 79 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 138
Query: 227 LALEPNN 233
L + N
Sbjct: 139 LNQDAKN 145
Score = 29.2 bits (64), Expect = 0.49
Identities = 9/67 (13%), Positives = 17/67 (25%)
Query: 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
+ + + + + Y A + E A K + L N
Sbjct: 25 PQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRR 84
Query: 242 ELNRKLN 248
L + L
Sbjct: 85 VLLKSLQ 91
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 36.9 bits (84), Expect = 0.002
Identities = 6/99 (6%), Positives = 25/99 (25%)
Query: 137 EQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLD 196
E ++ Y+ + +++ + + + +
Sbjct: 213 ELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN 272
Query: 197 NTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQ 235
+ A L + ++ + + A++P
Sbjct: 273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA 311
Score = 28.8 bits (63), Expect = 0.60
Identities = 10/124 (8%), Positives = 29/124 (23%), Gaps = 1/124 (0%)
Query: 148 WGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASL-KLDNTYVKAYQRR 206
W +E ++ + + R + + E T SL + + ++ R
Sbjct: 125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184
Query: 207 AAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIPLSPIKVDFLHNPYHLT 266
+ L+ D+ + + + +
Sbjct: 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFR 244
Query: 267 RDQR 270
+
Sbjct: 245 CELS 248
>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 142
Score = 34.6 bits (79), Expect = 0.004
Identities = 4/52 (7%), Positives = 16/52 (30%)
Query: 49 LNDCGDHVIVMNSRHIALPGYEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPT 100
+ G+ V+++N+ + G + + ++ +
Sbjct: 21 MLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPRRGPFYPKRSD 72
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 33.2 bits (74), Expect = 0.021
Identities = 27/127 (21%), Positives = 46/127 (36%)
Query: 122 EEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKN 181
L A E+G G A ++ A+ P F + + N
Sbjct: 27 ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 86
Query: 182 YVSAEADCTASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELA 241
+ +A + L+LD TY A+ R A + A+ D+L +PN+ + L
Sbjct: 87 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 146
Query: 242 ELNRKLN 248
+KL+
Sbjct: 147 LAEQKLD 153
Score = 29.8 bits (65), Expect = 0.27
Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 4/111 (3%)
Query: 139 GNKLVKEGKWGEAIEKYNVAIQTYPHDAVFFANRALCFLKMKNYVSAEADCTASLKLDNT 198
+ + E + E ++++ + +AD T + L
Sbjct: 148 AEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEH 207
Query: 199 YVKAYQRRAAARRSLNHFEDARKDILKVLALEPNN----KQAEIELAELNR 245
+ SL + A +A +N + A +EL+ L +
Sbjct: 208 LSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQ 258
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 29.1 bits (63), Expect = 0.65
Identities = 23/263 (8%), Positives = 51/263 (19%), Gaps = 14/263 (5%)
Query: 1 MSAYERVKQWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMN 60
+ W+ + L H ++
Sbjct: 78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVR 137
Query: 61 SRHIALPG----YEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDKACEELDKQDSDED 116
R L E + A L + + + +
Sbjct: 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR 197
Query: 117 EESDVEEEDLDRIASAVYSKEQGNKLVKEGKWGEAIEKYNVAIQTYPHD----AVFFANR 172
E+ + + +K + G A + + + N
Sbjct: 198 LENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257
Query: 173 ALCFLKMKNYVSAEADCTASL------KLDNTYVKAYQRRAAARRSLNHFEDARKDILKV 226
A + + + AE +L + + DA++ +L
Sbjct: 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317
Query: 227 LALEPNNKQAEIELAELNRKLNI 249
L L + E
Sbjct: 318 LKLANRTGFISHFVIEGEAMAQQ 340
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 27.0 bits (60), Expect = 2.9
Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 25/89 (28%)
Query: 80 TGYPGGVSWTLAWQLHEIDPTLDKACEELDKQ---DSDEDEESDVEEEDLDRIASAVYSK 136
G G VSW A +EI+ + + K+ D + V + +Y+
Sbjct: 525 VGLCGAVSWLDAKASYEINHA--GPNQPIPKEGEIDPIKGIWKSVND--------YLYTA 574
Query: 137 EQGNKLVKEGKWGEAIEKYNV-AIQTYPH 164
+E+ + + P
Sbjct: 575 SNR-----------NLEQVCLYTLMENPM 592
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle
domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 150
Score = 26.0 bits (57), Expect = 4.0
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Query: 71 WKKR--AYFHHTGYPGGVSWTL 90
W KR Y + G+ GGVSW +
Sbjct: 16 WAKRHNIYSNILGFLGGVSWAM 37
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 25.5 bits (56), Expect = 4.1
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 213 LNHFEDARKDILKVLALEPNNKQA 236
L + A++ + + E NNKQ
Sbjct: 86 LGEYSMAKRYVDTLFEHERNNKQV 109
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 150
Score = 25.6 bits (56), Expect = 4.7
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 71 WKKR--AYFHHTGYPGGVSWTL 90
W +R Y + G+PGGV+W +
Sbjct: 16 WAQRRAVYANIFGFPGGVAWAM 37
>d1uqwa_ c.94.1.1 (A:) Hypothetical protein YliB {Escherichia coli
[TaxId: 562]}
Length = 487
Score = 26.2 bits (56), Expect = 5.0
Identities = 11/107 (10%), Positives = 30/107 (28%)
Query: 9 QWNTFARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPG 68
+T ++ + A+V + + + + +
Sbjct: 331 NHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEVEGKGQKESGVRMFYTGWSASTGE 390
Query: 69 YEWKKRAYFHHTGYPGGVSWTLAWQLHEIDPTLDKACEELDKQDSDE 115
+W F +P + T + ++D L +A + D +
Sbjct: 391 ADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQALKTNDPAEKTR 437
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 26.0 bits (57), Expect = 5.7
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 106 EELDKQDSDEDEESDVEEEDLDRIASAV-YSKEQGNKL----VKEGKWGEAI 152
+EL K S + E SD+++ +L R A + E + V++GK EAI
Sbjct: 5 DELVKTASLKGEPSDMDKAELRRRQQAFGLTMEDMELILHPMVEDGK--EAI 54
>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo
(Bothrops asper), bap1 [TaxId: 8722]}
Length = 202
Score = 25.1 bits (54), Expect = 7.9
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 17 WHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLND--CGDHVIVMNSRHIALPGYEWKK- 73
+ +N + A ++ H G + I H CG +M S + YE+
Sbjct: 123 VGVVRDHSKNNLWVAVTMA-HELGHNLGIDHDTGSCSCGAKSCIMASVLSKVLSYEFSDC 181
Query: 74 -RAYFHH 79
+ +
Sbjct: 182 SQNQYET 188
>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase
{Nostoc sp. pcc 7120 [TaxId: 103690]}
Length = 210
Score = 25.2 bits (55), Expect = 8.2
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 7/42 (16%)
Query: 34 ISKHLQGQHKPIYHPLNDCGDH--VIVMNSRHIALPGYEWKK 73
+S Q Y CG ++V+NS I P
Sbjct: 29 LSMQFVTQVNQAY-----CGVASIIMVLNSLGINAPETAQYS 65
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha,
N-terminal (G) domain {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 239
Score = 25.0 bits (54), Expect = 9.2
Identities = 11/76 (14%), Positives = 20/76 (26%), Gaps = 1/76 (1%)
Query: 14 ARIWHIYDAKWQNPIESAKVISKHLQGQHKPIYHPLNDCGDHVIVMNSRHIALPGYEWKK 73
+ + + IE + + L L+ + IAL +E K
Sbjct: 24 GHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 83
Query: 74 RAYFHHTGYPGGVSWT 89
PG +
Sbjct: 84 Y-QVTVIDAPGHRDFI 98
>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 366
Score = 25.3 bits (54), Expect = 9.5
Identities = 14/62 (22%), Positives = 23/62 (37%)
Query: 191 ASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQAEIELAELNRKLNIP 250
L + + L H E L LALE +++Q EL L++P
Sbjct: 249 GGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLP 308
Query: 251 LS 252
++
Sbjct: 309 VT 310
>d1llna_ d.165.1.1 (A:) Antiviral protein 3 {Pokeweed (Phytolacca
americana) [TaxId: 3527]}
Length = 262
Score = 25.0 bits (54), Expect = 9.7
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 190 TASLKLDNTYVKAYQRRAAARRSLNHFEDARKDILKVLALEPNNKQA 236
T +++ N Y++ Y + F+D+ D + + +K
Sbjct: 60 TLAIRRGNLYLEGYSDIYNGKCRYRIFKDSESDAQETVCPGDKSKPG 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.409
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,075,074
Number of extensions: 50613
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 71
Length of query: 270
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,254,276
Effective search space: 233295336
Effective search space used: 233295336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)