BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6286
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2
PE=1 SV=3
Length = 1042
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/191 (49%), Positives = 125/191 (65%), Gaps = 41/191 (21%)
Query: 2 SLLHMEELKCRKRVLRRLGYATEADVIEMKGRVACELSKSEETVILTI------ND---- 51
++L M+ELKCRKRVLRRLG+AT +DVIEMKGRVACE+S ++E ++ + ND
Sbjct: 844 TVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAE 903
Query: 52 -------------------KL------------ELARHIARISIESKLDLDEDSYVNQFK 80
KL E A+ IA++S E+KL++DE++Y++ FK
Sbjct: 904 QATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFK 963
Query: 81 PSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKF 140
P LMDVV+ W GA+F +C +TD+FEGSIIRCMRRLEE+LRQ+ QA++ IGNT LE KF
Sbjct: 964 PHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKF 1023
Query: 141 NEAIKTVKRDI 151
E I +KRDI
Sbjct: 1024 AEGITKIKRDI 1034
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2
PE=2 SV=1
Length = 1040
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 94/191 (49%), Positives = 125/191 (65%), Gaps = 41/191 (21%)
Query: 2 SLLHMEELKCRKRVLRRLGYATEADVIEMKGRVACELSKSEETVILTI------ND---- 51
++L M+ELKCRKRVLRRLG+AT +DVIEMKGRVACE+S ++E ++ + ND
Sbjct: 842 TVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSE 901
Query: 52 -------------------KL------------ELARHIARISIESKLDLDEDSYVNQFK 80
KL E A+ IA++S E+KL++DE++Y++ FK
Sbjct: 902 QATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSFK 961
Query: 81 PSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKF 140
P LMDVV+ W GA+F +C +TD+FEGSIIRCMRRLEE+LRQ+ QA++ IGNT LE KF
Sbjct: 962 PHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKF 1021
Query: 141 NEAIKTVKRDI 151
E I +KRDI
Sbjct: 1022 AEGITKIKRDI 1032
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mtr4 PE=1 SV=1
Length = 1117
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/193 (44%), Positives = 118/193 (61%), Gaps = 44/193 (22%)
Query: 2 SLLHMEELKCRKRVLRRLGYATEADVIEMKGRVACELSKSEETVILT-------INDKL- 53
S++ ++EL RKRVLRRLG+ T DVIE+KGRVACE+S S + ++LT ND
Sbjct: 918 SIMQLDELNSRKRVLRRLGFTTSDDVIEVKGRVACEIS-SGDGLLLTELIFNGMFNDLTP 976
Query: 54 -----------------------------------ELARHIARISIESKLDLDEDSYVNQ 78
E+AR IA++S ESK +L+E+ YVN
Sbjct: 977 EQCAALLSCLVFQEKSEVENQRMKEELAGPLKILQEMARRIAKVSKESKQELNEEEYVNS 1036
Query: 79 FKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEE 138
FKPSLM+VV+AW GASF ++C +TD++EGS+IR RRLEE++RQ+V A++ IGNT L++
Sbjct: 1037 FKPSLMEVVYAWAHGASFAQICKMTDVYEGSLIRMFRRLEELIRQMVDAAKVIGNTSLQQ 1096
Query: 139 KFNEAIKTVKRDI 151
K + I + RDI
Sbjct: 1097 KMEDTIACIHRDI 1109
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1
Length = 1026
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 109/190 (57%), Gaps = 40/190 (21%)
Query: 2 SLLHMEELKCRKRVLRRLGYATEADVIEMKGRVACELSKSEETVI--------------- 46
S LH+EEL RKRVLRRLGY D + +KG VACELS S+E ++
Sbjct: 829 STLHLEELNNRKRVLRRLGYLGNDDALVLKGSVACELSASDELILTEMLLKGIFNTLDVA 888
Query: 47 --------LTINDKL-----------------ELARHIARISIESKLDLDEDSYVNQFKP 81
DK E AR++A++S E K+++ ED YV+ F P
Sbjct: 889 QTAALLSCFVFQDKCAAPKLATELQTCLSELHEQARNVAKVSNECKMEVMEDKYVSSFNP 948
Query: 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKFN 141
LMDVV+ W GA+F ++ TD+FEGSIIR +RRLEEVLR+++ A++ + N LE+KF
Sbjct: 949 GLMDVVYQWVNGATFSEIVKTTDVFEGSIIRTLRRLEEVLREMINAAKALANKELEQKFE 1008
Query: 142 EAIKTVKRDI 151
+A K +KRDI
Sbjct: 1009 DARKNLKRDI 1018
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 109/194 (56%), Gaps = 42/194 (21%)
Query: 2 SLLHMEELKCRKRVLRRLGYATEADVIEMKGRVACELSKSEETVIL-------------- 47
+++ + ELK R+RVLRRLG+ T +VI++KGRVACE++ +E +++
Sbjct: 831 AIIQLRELKIRQRVLRRLGFCTLENVIDIKGRVACEITSGDELLLVELIFQGFFNQMPPE 890
Query: 48 ------------------TINDK----------LELARHIARISIESKLDLDEDSYVNQF 79
T+N K +E A+ IA +S+ESKL +E Y++QF
Sbjct: 891 EIAAALSCFVYEDKSEVSTLNLKEPFKKMYLTIIEAAKRIATVSLESKLQFNESDYLHQF 950
Query: 80 KPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEK 139
KP +M+ V W GASF ++C ++ ++EGSI+R RRL+E+L+QL A+ +GN L+EK
Sbjct: 951 KPDIMEPVSLWINGASFQEICIVSKLYEGSIVRTFRRLDELLKQLEHAAIVLGNNELKEK 1010
Query: 140 FNEAIKTVKRDIFL 153
+ + RDI
Sbjct: 1011 SVLTEQKLHRDIIF 1024
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 104 DIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEE-KFNEAIKTVKRDIFLEILENL 159
D F+ + I+C+ R+E V LV A + G T++ E +A+K +R I+ +++L
Sbjct: 127 DPFQSTAIKCVERMESV---LVSAHTSAGKTVIAEYAIAQALKNRQRVIYTSPIKSL 180
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1
Length = 1073
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 93/173 (53%), Gaps = 41/173 (23%)
Query: 20 GYATEADVIEMKGRVACELSKSEETVI--LTINDKL------------------------ 53
G+ T D+IE+KGRVACE+S +E ++ L N
Sbjct: 893 GFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEA 952
Query: 54 ---------------ELARHIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLK 98
E+A IA+I +SK+++ E YV F+ LM+VV+ WC GA+F +
Sbjct: 953 PRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQ 1012
Query: 99 VCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKFNEAIKTVKRDI 151
+C +TD++EGS+IR +RLEE++++LV + IGN+ L+EK +K + RDI
Sbjct: 1013 ICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDI 1065
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 73.2 bits (178), Expect = 7e-13, Method: Composition-based stats.
Identities = 49/184 (26%), Positives = 81/184 (44%), Gaps = 40/184 (21%)
Query: 8 ELKCRKRVLRRLGYATEADVIEMKGRVACELS------------------KSEETVIL-- 47
E R VLR LGY EA +++ GRVAC +S + EE L
Sbjct: 1054 EYHQRVEVLRTLGYVDEAGTVKLAGRVACAMSSHELLLTELMFDNALSTLRPEEIAALLS 1113
Query: 48 ----------------TINDKLE----LARHIARISIESKLDLDEDSYVNQFKPSLMDVV 87
T+ +E +A+ I + + L+ + +V + L++VV
Sbjct: 1114 GLVCQSPGDAGDQLPNTLKQGIERVRAVAKRIGEVQVACGLNQTVEEFVGELNFGLVEVV 1173
Query: 88 HAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKFNEAIKTV 147
+ W G F ++ ++ EG ++RC++RL E+ R L A+R +G +L K A +
Sbjct: 1174 YEWARGMPFSELAGLSGTPEGLVVRCIQRLAEMCRSLRGAARLVGEPVLGAKMETAATLL 1233
Query: 148 KRDI 151
+RDI
Sbjct: 1234 RRDI 1237
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1
Length = 1213
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 93/189 (49%), Gaps = 43/189 (22%)
Query: 6 MEELKCRKRVLRRLGYATEADVIEMKGRVACELSKSEETVI------------------- 46
+ + + R +VL+ LGY + +KGRVACE++ + E V+
Sbjct: 1017 LPDYEQRIKVLQELGYIDAERTVLLKGRVACEINSTSELVLTELILENSLADFSCEETIA 1076
Query: 47 ----LTINDKLE----LARHIAR-----ISIESKLDLDEDSYV-------NQF--KP--S 82
++K E ++ H+ + +S+ K++ ++ Y N F +P
Sbjct: 1077 LLSAFVFDEKTEVEPTISPHLQKGKEMILSVAEKVNQIQEHYQVLYFNEGNDFESQPRFG 1136
Query: 83 LMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKFNE 142
LM+V + W G SF ++ +TD+ EGSI+R + RL+EVLR+ A+R +G++ + K E
Sbjct: 1137 LMEVCYEWARGMSFNRITDLTDVLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTKMEE 1196
Query: 143 AIKTVKRDI 151
++R+I
Sbjct: 1197 CQNLIRRNI 1205
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SKI2 PE=1 SV=2
Length = 1287
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 67 KLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126
L DE ++++ + ++M+VV+ W G SF ++ ++ EG+++R + L+E+ R++
Sbjct: 1195 PLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITWLDEICREVKT 1254
Query: 127 ASRNIGNTLLEEKFNEAIKTVKRDI 151
AS IGN+ L K + A + +KRDI
Sbjct: 1255 ASIIIGNSTLHMKMSRAQELIKRDI 1279
>sp|C5B768|LPOA_EDWI9 Penicillin-binding protein activator LpoA OS=Edwardsiella ictaluri
(strain 93-146) GN=lpoA PE=3 SV=2
Length = 682
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 23/147 (15%)
Query: 14 RVLRRLGYATEADVIEMKGRVACELSKSEETVILTINDKLELARHIAR--ISIESKLDLD 71
R L R G +AD ++ G++ +L+++++ ++ +LE+ARH + +I SKLD+
Sbjct: 71 RALLREGKLPQAD--DLLGQLPSQLTEAQQLEQRLVSAELEIARHAPQQAQAILSKLDIS 128
Query: 72 EDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNI 131
S Q + V A +G + L + IR L+ +L Q Q NI
Sbjct: 129 LLSQAQQLR--YYQAVIAAVQGKTTL-----------AQIRAYIALQPLLTQENQRKSNI 175
Query: 132 G------NTLLEEKFNEAIKTVKRDIF 152
NTL N + DI
Sbjct: 176 DATWTALNTLTPADLNSMVINANEDIL 202
>sp|Q6XDB5|TPSD2_PICSI Pinene synthase, chloroplastic OS=Picea sitchensis PE=1 SV=1
Length = 627
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 14 RVLRRLGYATEADVIEM----KGRVACELSKSEETVILTIN 50
R LR GYA ADV+ + G+ AC S++EE + +N
Sbjct: 181 RTLRLHGYAVSADVLNLFKDQNGQFACSPSQTEEEIRSVLN 221
>sp|Q8IZY2|ABCA7_HUMAN ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7
PE=1 SV=3
Length = 2146
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 81 PSLMDVVHAWCEGASFLK--------VCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIG 132
P L+ +V W GA ++ V T +GS R L+ L +L I
Sbjct: 1076 PQLLALVQHWVPGARLVEELPHELVLVLPYTGAHDGSFATLFRELDTRLAELRLTGYGIS 1135
Query: 133 NTLLEEKFNEAIKTVKRDIFLE 154
+T LEE F + ++ D +E
Sbjct: 1136 DTSLEEIFLKVVEECAADTDME 1157
>sp|Q8LNU5|NOC2L_ORYSJ Nucleolar complex protein 2 homolog OS=Oryza sativa subsp. japonica
GN=Os10g0495500 PE=2 SV=1
Length = 757
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 80 KPSLMDVVHAWCEGASFLKVCSITDIFEG 108
KP M +V +WC+GA K+ SI I E
Sbjct: 95 KPITMQMVDSWCQGAEDGKIGSIRSILEA 123
>sp|Q6CKI5|ERT1_KLULA Transcription activator of gluconeogenesis ERT1 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=ERT1 PE=3 SV=1
Length = 507
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 49 INDKLELARHIARISIESKLD-----LDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSIT 103
+ND+ L R+ + +K+ +D D+ + F+ + V + GA +++C++
Sbjct: 406 VNDEFSLLTGWNRLELLNKMTFIVELMDGDTVMEYFQ-TFTRVAYQGFRGAETMRICNLL 464
Query: 104 DIFEGSIIRC 113
+GS+I+C
Sbjct: 465 TPIKGSVIKC 474
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,731,096
Number of Sequences: 539616
Number of extensions: 1884376
Number of successful extensions: 6127
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 6104
Number of HSP's gapped (non-prelim): 37
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)