Query psy6286
Match_columns 159
No_of_seqs 132 out of 565
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:34:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/6286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a4z_A Antiviral helicase SKI2 100.0 1.9E-49 6.5E-54 373.9 14.4 158 2-159 795-997 (997)
2 2xgj_A ATP-dependent RNA helic 100.0 6.5E-49 2.2E-53 370.8 15.8 158 2-159 812-1010(1010)
3 3l9o_A ATP-dependent RNA helic 100.0 1.5E-49 5.3E-54 377.8 6.2 158 2-159 910-1108(1108)
4 2va8_A SSO2462, SKI2-type heli 96.6 0.025 8.7E-07 50.7 12.5 145 8-152 472-653 (715)
5 2zj8_A DNA helicase, putative 95.1 0.11 3.7E-06 46.8 9.7 145 7-151 454-641 (720)
6 2p6r_A Afuhel308 helicase; pro 93.6 0.15 5.2E-06 45.6 7.1 123 7-134 453-614 (702)
7 4dyq_A Gene 1 protein; GP1, oc 93.1 0.28 9.4E-06 35.7 6.6 65 78-143 12-78 (140)
8 2o8x_A Probable RNA polymerase 85.2 1.7 5.8E-05 26.6 4.8 50 78-127 15-65 (70)
9 3idw_A Actin cytoskeleton-regu 85.1 0.62 2.1E-05 30.7 2.7 49 54-121 17-65 (72)
10 1tc3_C Protein (TC3 transposas 80.5 1.5 5E-05 24.4 2.9 34 84-117 12-45 (51)
11 1xsv_A Hypothetical UPF0122 pr 77.9 14 0.00049 25.3 8.4 69 77-148 24-93 (113)
12 3hug_A RNA polymerase sigma fa 75.8 7.7 0.00026 25.3 5.8 49 78-126 37-86 (92)
13 2elh_A CG11849-PA, LD40883P; s 72.9 3.8 0.00013 26.8 3.7 49 79-127 23-72 (87)
14 1fse_A GERE; helix-turn-helix 72.3 6.9 0.00024 23.9 4.7 45 78-122 11-55 (74)
15 3mzy_A RNA polymerase sigma-H 70.4 9.3 0.00032 26.4 5.5 50 78-127 109-158 (164)
16 3i4u_A ATP-dependent RNA helic 67.7 4.5 0.00015 32.4 3.7 34 7-40 18-51 (270)
17 1je8_A Nitrate/nitrite respons 66.6 9.1 0.00031 24.6 4.4 46 77-122 20-65 (82)
18 1jko_C HIN recombinase, DNA-in 66.5 3.2 0.00011 23.4 1.9 34 84-117 12-45 (52)
19 3shg_B VBHA; ampylation, adeny 65.5 4 0.00014 25.9 2.3 24 78-101 27-51 (61)
20 1x3u_A Transcriptional regulat 65.3 7.8 0.00027 24.1 3.8 46 77-122 15-60 (79)
21 2jpc_A SSRB; DNA binding prote 64.6 9.3 0.00032 22.5 3.9 37 85-121 5-41 (61)
22 3eco_A MEPR; mutlidrug efflux 64.3 11 0.00036 25.7 4.7 38 82-119 35-73 (139)
23 2gxg_A 146AA long hypothetical 62.8 14 0.00048 25.1 5.1 36 82-119 41-76 (146)
24 3jw4_A Transcriptional regulat 61.6 13 0.00043 25.7 4.7 39 81-119 44-83 (148)
25 1sfx_A Conserved hypothetical 61.2 20 0.00068 22.9 5.4 37 82-119 24-60 (109)
26 4b8x_A SCO5413, possible MARR- 60.5 8.7 0.0003 27.1 3.7 55 57-119 22-77 (147)
27 1ku3_A Sigma factor SIGA; heli 60.2 19 0.00067 22.1 5.0 45 78-122 10-59 (73)
28 3fm5_A Transcriptional regulat 60.0 14 0.00048 25.6 4.7 55 57-119 26-80 (150)
29 3bro_A Transcriptional regulat 59.1 22 0.00074 24.0 5.5 27 93-119 50-76 (141)
30 1ku9_A Hypothetical protein MJ 58.6 16 0.00054 24.8 4.8 55 57-119 13-67 (152)
31 3oop_A LIN2960 protein; protei 58.0 11 0.00038 25.8 3.9 38 81-119 40-77 (143)
32 3deu_A Transcriptional regulat 58.0 9.5 0.00032 27.4 3.6 39 81-119 56-94 (166)
33 3c57_A Two component transcrip 57.6 18 0.00061 23.8 4.7 46 77-122 26-71 (95)
34 3g3z_A NMB1585, transcriptiona 57.4 22 0.00074 24.3 5.4 38 81-119 34-71 (145)
35 3m8j_A FOCB protein; all-alpha 57.4 22 0.00076 25.1 5.3 52 81-132 47-99 (111)
36 2rdp_A Putative transcriptiona 57.1 20 0.00068 24.6 5.1 37 82-119 46-82 (150)
37 2p7v_B Sigma-70, RNA polymeras 56.8 12 0.00041 22.8 3.5 46 78-123 5-55 (68)
38 2jn6_A Protein CGL2762, transp 56.8 12 0.00039 24.5 3.6 34 85-118 13-48 (97)
39 2a61_A Transcriptional regulat 56.7 16 0.00054 24.9 4.5 38 81-119 36-73 (145)
40 2rnj_A Response regulator prot 56.6 14 0.00047 24.0 4.0 46 77-122 28-73 (91)
41 1jgs_A Multiple antibiotic res 56.6 21 0.00073 24.0 5.1 28 92-119 47-74 (138)
42 3u2r_A Regulatory protein MARR 56.4 21 0.00071 25.3 5.2 38 82-119 50-88 (168)
43 3s2w_A Transcriptional regulat 55.4 30 0.001 24.1 5.9 54 57-119 37-90 (159)
44 1s7o_A Hypothetical UPF0122 pr 55.1 47 0.0016 22.7 8.1 51 77-127 21-72 (113)
45 3bja_A Transcriptional regulat 55.0 19 0.00064 24.2 4.6 30 90-119 43-73 (139)
46 2fbh_A Transcriptional regulat 54.4 30 0.001 23.4 5.6 28 92-119 51-78 (146)
47 2fa5_A Transcriptional regulat 54.2 30 0.001 24.0 5.7 38 82-120 53-90 (162)
48 1lj9_A Transcriptional regulat 53.6 23 0.00079 24.0 5.0 28 92-119 42-69 (144)
49 1pdn_C Protein (PRD paired); p 53.5 19 0.00064 23.8 4.4 35 85-119 25-59 (128)
50 3f3x_A Transcriptional regulat 53.2 25 0.00084 24.0 5.0 31 90-120 47-77 (144)
51 4hbl_A Transcriptional regulat 52.2 23 0.00078 24.5 4.8 38 81-119 44-81 (149)
52 1r7j_A Conserved hypothetical 51.7 9.7 0.00033 25.5 2.6 32 6-37 34-68 (95)
53 3k0l_A Repressor protein; heli 51.6 39 0.0013 23.6 6.0 54 57-119 33-86 (162)
54 3bpv_A Transcriptional regulat 51.5 24 0.00084 23.6 4.8 37 82-119 33-69 (138)
55 3ech_A MEXR, multidrug resista 51.2 42 0.0014 22.7 6.0 37 82-119 41-77 (142)
56 1p4w_A RCSB; solution structur 51.0 20 0.00067 24.2 4.1 44 78-121 34-77 (99)
57 2qww_A Transcriptional regulat 51.0 23 0.00079 24.4 4.7 31 89-119 50-81 (154)
58 2xau_A PRE-mRNA-splicing facto 50.2 13 0.00046 33.9 4.0 34 7-40 489-522 (773)
59 3cdh_A Transcriptional regulat 48.1 26 0.00089 24.2 4.5 31 89-119 52-83 (155)
60 3hsr_A HTH-type transcriptiona 47.8 10 0.00035 26.0 2.3 28 92-119 49-76 (140)
61 3kp7_A Transcriptional regulat 47.6 45 0.0016 22.8 5.8 52 58-119 26-77 (151)
62 1z7u_A Hypothetical protein EF 47.0 32 0.0011 23.0 4.7 30 90-119 32-62 (112)
63 3bdd_A Regulatory protein MARR 46.4 43 0.0015 22.4 5.4 29 91-119 43-71 (142)
64 1k78_A Paired box protein PAX5 46.3 26 0.0009 24.4 4.4 36 84-119 39-74 (149)
65 1or7_A Sigma-24, RNA polymeras 46.1 48 0.0016 23.5 5.9 47 78-124 140-187 (194)
66 2fbk_A Transcriptional regulat 45.8 27 0.00093 25.1 4.4 39 81-119 72-112 (181)
67 3e6m_A MARR family transcripti 45.7 29 0.001 24.2 4.6 55 56-119 39-93 (161)
68 2k4b_A Transcriptional regulat 45.4 27 0.00093 23.5 4.1 41 78-119 35-79 (99)
69 3bj6_A Transcriptional regulat 44.5 37 0.0013 23.1 4.9 28 92-119 53-80 (152)
70 2whn_A PILC, pilus assembly pr 44.4 47 0.0016 22.0 5.2 32 84-115 53-84 (116)
71 1u78_A TC3 transposase, transp 43.7 19 0.00064 24.5 3.1 34 84-117 13-46 (141)
72 1rp3_A RNA polymerase sigma fa 43.3 61 0.0021 23.6 6.2 48 77-124 186-234 (239)
73 2hzt_A Putative HTH-type trans 42.8 38 0.0013 22.4 4.5 30 90-119 24-54 (107)
74 2x48_A CAG38821; archeal virus 42.7 16 0.00056 21.0 2.3 32 85-116 23-54 (55)
75 1tty_A Sigma-A, RNA polymerase 42.7 40 0.0014 21.5 4.5 47 77-123 17-68 (87)
76 2pex_A Transcriptional regulat 42.6 26 0.00089 24.1 3.8 28 92-119 60-87 (153)
77 2glo_A Brinker CG9653-PA; prot 42.5 23 0.00077 21.1 3.0 35 90-124 18-56 (59)
78 3gzi_A Transcriptional regulat 41.9 51 0.0017 23.3 5.4 37 92-128 36-72 (218)
79 2pg4_A Uncharacterized protein 41.6 27 0.00091 22.5 3.5 28 93-120 30-58 (95)
80 2bv6_A MGRA, HTH-type transcri 41.0 35 0.0012 23.1 4.2 29 92-120 50-78 (142)
81 3boq_A Transcriptional regulat 40.9 44 0.0015 23.0 4.9 28 92-119 61-88 (160)
82 3cjn_A Transcriptional regulat 40.7 26 0.0009 24.3 3.6 28 92-119 65-92 (162)
83 1s3j_A YUSO protein; structura 40.7 38 0.0013 23.1 4.5 37 82-119 41-77 (155)
84 2ga1_A Protein of unknown func 40.6 52 0.0018 22.8 5.0 49 79-127 50-99 (106)
85 2frh_A SARA, staphylococcal ac 40.6 30 0.001 23.5 3.8 28 92-119 52-79 (127)
86 2hr3_A Probable transcriptiona 39.9 39 0.0013 22.9 4.4 38 82-119 39-76 (147)
87 2q1z_A RPOE, ECF SIGE; ECF sig 39.7 33 0.0011 24.3 4.0 47 78-124 135-182 (184)
88 4aik_A Transcriptional regulat 38.9 52 0.0018 23.1 5.0 37 83-119 36-72 (151)
89 3fxz_A Serine/threonine-protei 38.6 14 0.00047 28.6 1.9 45 85-129 93-137 (297)
90 2qvo_A Uncharacterized protein 38.4 25 0.00087 22.7 3.0 26 94-119 31-56 (95)
91 2fxa_A Protease production reg 38.1 41 0.0014 25.1 4.5 37 82-119 52-88 (207)
92 3bqz_B HTH-type transcriptiona 36.7 45 0.0015 23.0 4.3 35 92-126 21-55 (194)
93 2g7s_A Transcriptional regulat 36.3 39 0.0013 23.3 3.9 35 92-126 27-61 (194)
94 1sgm_A Putative HTH-type trans 35.7 58 0.002 22.3 4.8 36 91-126 24-60 (191)
95 2qtq_A Transcriptional regulat 35.4 64 0.0022 22.5 5.0 36 92-127 35-70 (213)
96 2fbi_A Probable transcriptiona 34.9 36 0.0012 22.8 3.4 32 88-119 44-76 (142)
97 2hyt_A TETR-family transcripti 34.8 83 0.0028 22.1 5.6 34 92-125 31-64 (197)
98 1tbx_A ORF F-93, hypothetical 34.4 35 0.0012 21.9 3.2 28 92-119 21-52 (99)
99 3tgn_A ADC operon repressor AD 34.1 46 0.0016 22.5 3.9 35 85-119 43-77 (146)
100 2nyx_A Probable transcriptiona 34.0 70 0.0024 22.4 5.1 37 82-119 49-85 (168)
101 3lxp_A Non-receptor tyrosine-p 33.8 20 0.0007 27.8 2.2 46 85-130 111-156 (318)
102 2vn2_A DNAD, chromosome replic 33.2 68 0.0023 22.2 4.7 26 94-119 52-77 (128)
103 3a7i_A MST3 kinase, serine/thr 33.1 11 0.00036 29.0 0.4 48 85-132 96-143 (303)
104 3qkx_A Uncharacterized HTH-typ 33.0 23 0.0008 24.4 2.2 35 92-126 27-61 (188)
105 3lwj_A Putative TETR-family tr 32.6 50 0.0017 23.0 4.0 49 92-144 31-79 (202)
106 2v57_A TETR family transcripti 31.8 53 0.0018 22.7 4.0 42 85-127 25-66 (190)
107 1ub9_A Hypothetical protein PH 31.8 24 0.00081 22.5 1.9 29 91-119 28-56 (100)
108 2lkp_A Transcriptional regulat 31.3 59 0.002 21.5 4.1 36 82-119 36-71 (119)
109 4fx0_A Probable transcriptiona 31.2 1.1E+02 0.0036 21.3 5.6 26 94-119 53-78 (148)
110 1z91_A Organic hydroperoxide r 31.2 30 0.001 23.5 2.5 29 92-120 53-81 (147)
111 3on4_A Transcriptional regulat 31.1 46 0.0016 22.9 3.5 35 92-126 29-63 (191)
112 3ulq_B Transcriptional regulat 30.7 69 0.0024 20.8 4.2 43 78-120 29-71 (90)
113 2c30_A Serine/threonine-protei 30.6 23 0.00079 27.7 2.0 46 85-130 118-163 (321)
114 1p4x_A Staphylococcal accessor 30.5 86 0.0029 24.4 5.4 103 7-119 65-200 (250)
115 3cuo_A Uncharacterized HTH-typ 30.5 39 0.0013 21.4 2.9 30 90-119 34-64 (99)
116 3f0c_A TETR-molecule A, transc 30.2 57 0.002 23.0 4.0 35 92-126 30-64 (216)
117 1hsj_A Fusion protein consisti 30.1 32 0.0011 28.6 3.0 37 83-119 407-446 (487)
118 4a5n_A Uncharacterized HTH-typ 30.1 77 0.0026 22.3 4.6 33 87-119 33-66 (131)
119 2f2e_A PA1607; transcription f 29.9 79 0.0027 22.3 4.7 30 90-119 34-63 (146)
120 3dew_A Transcriptional regulat 29.9 30 0.001 24.1 2.4 36 92-127 27-62 (206)
121 3f1b_A TETR-like transcription 29.6 30 0.001 24.2 2.3 35 92-126 33-67 (203)
122 2k27_A Paired box protein PAX- 29.3 27 0.00092 24.7 2.0 33 85-117 33-65 (159)
123 2fsw_A PG_0823 protein; alpha- 29.3 64 0.0022 21.2 3.9 30 90-119 35-65 (107)
124 3iwf_A Transcription regulator 29.0 49 0.0017 22.5 3.3 28 90-117 32-59 (107)
125 2dg8_A Putative TETR-family tr 28.7 66 0.0023 22.5 4.1 35 92-126 28-62 (193)
126 1s69_A Cyanoglobin, hemoglobin 28.5 86 0.0029 21.2 4.5 65 83-153 47-123 (124)
127 3qbm_A TETR transcriptional re 27.7 45 0.0015 23.1 3.0 34 92-125 26-59 (199)
128 2o3f_A Putative HTH-type trans 27.4 38 0.0013 23.1 2.5 28 90-117 36-63 (111)
129 3iuo_A ATP-dependent DNA helic 27.4 1.5E+02 0.0052 20.3 6.9 36 82-117 21-56 (122)
130 2dk5_A DNA-directed RNA polyme 27.3 77 0.0026 20.9 4.0 38 82-119 22-62 (91)
131 3bni_A Putative TETR-family tr 27.3 76 0.0026 23.0 4.4 36 92-127 62-97 (229)
132 3clj_A Protein NRD1; CTD-inter 27.1 1.5E+02 0.0052 21.8 5.9 65 85-156 67-136 (157)
133 1zl8_A LIN-7; heterodimer, alp 27.1 57 0.0019 19.9 2.9 27 109-136 4-30 (53)
134 3dcf_A Transcriptional regulat 27.1 76 0.0026 22.2 4.2 35 92-126 50-84 (218)
135 3c2b_A Transcriptional regulat 26.8 37 0.0013 24.2 2.4 35 92-126 34-68 (221)
136 1x8b_A WEE1HU, WEE1-like prote 26.7 22 0.00075 26.5 1.2 47 84-130 86-137 (289)
137 3bru_A Regulatory protein, TET 26.7 72 0.0025 22.5 4.0 35 92-126 49-83 (222)
138 1p6r_A Penicillinase repressor 26.5 34 0.0012 21.4 2.0 39 80-119 11-53 (82)
139 2hku_A A putative transcriptio 26.3 1.1E+02 0.0038 21.6 5.1 34 92-125 38-71 (215)
140 3bhq_A Transcriptional regulat 26.3 1.1E+02 0.0038 21.6 5.1 34 92-125 31-64 (211)
141 2d1h_A ST1889, 109AA long hypo 26.3 62 0.0021 20.5 3.3 29 91-119 34-62 (109)
142 3q0w_A HTH-type transcriptiona 26.2 67 0.0023 23.4 3.9 36 92-127 63-98 (236)
143 3lhq_A Acrab operon repressor 26.2 35 0.0012 24.0 2.2 35 92-126 33-67 (220)
144 2v79_A DNA replication protein 26.1 1E+02 0.0035 21.7 4.7 27 93-119 51-77 (135)
145 3knw_A Putative transcriptiona 25.8 73 0.0025 22.3 3.9 35 92-126 33-67 (212)
146 1yyv_A Putative transcriptiona 25.6 61 0.0021 22.5 3.4 30 90-119 45-75 (131)
147 3clo_A Transcriptional regulat 25.6 77 0.0026 24.3 4.2 47 77-123 196-242 (258)
148 1p4x_A Staphylococcal accessor 25.6 46 0.0016 26.0 2.9 38 82-119 36-76 (250)
149 1pb6_A Hypothetical transcript 25.6 41 0.0014 23.7 2.5 35 92-126 37-71 (212)
150 2zcm_A Biofilm operon icaabcd 25.4 43 0.0015 23.4 2.5 35 92-126 26-60 (192)
151 3nxc_A HTH-type protein SLMA; 25.2 59 0.002 22.8 3.3 45 82-126 28-78 (212)
152 1sd4_A Penicillinase repressor 25.0 45 0.0015 22.2 2.5 38 81-119 13-54 (126)
153 3nrv_A Putative transcriptiona 25.0 74 0.0025 21.5 3.7 29 92-120 53-81 (148)
154 2ibd_A Possible transcriptiona 24.9 98 0.0034 21.7 4.5 35 91-125 32-66 (204)
155 3ppb_A Putative TETR family tr 24.9 37 0.0013 23.4 2.1 35 92-126 28-62 (195)
156 3kz9_A SMCR; transcriptional r 24.9 79 0.0027 21.8 3.9 35 92-126 36-70 (206)
157 2d6y_A Putative TETR family re 24.6 52 0.0018 23.4 2.9 35 92-126 27-61 (202)
158 2o7t_A Transcriptional regulat 24.6 78 0.0027 22.2 3.9 35 92-126 27-61 (199)
159 3anp_C Transcriptional repress 24.6 75 0.0026 22.3 3.8 33 92-124 28-60 (204)
160 3zr8_X AVR3A11; protein bindin 24.4 45 0.0015 21.2 2.1 22 80-101 18-41 (65)
161 2eth_A Transcriptional regulat 24.3 98 0.0033 21.1 4.3 32 88-119 52-84 (154)
162 3myf_A Sensor protein; HPT, hi 24.3 1.3E+02 0.0044 20.6 4.8 35 116-150 51-85 (119)
163 3gen_A Tyrosine-protein kinase 24.2 37 0.0013 25.5 2.1 46 85-130 95-142 (283)
164 2ao9_A Phage protein; structur 24.2 91 0.0031 22.9 4.2 35 93-127 48-85 (155)
165 3qry_B Putative uncharacterize 24.2 45 0.0016 28.7 2.8 39 110-152 233-271 (426)
166 3g7r_A Putative transcriptiona 24.1 94 0.0032 22.3 4.3 35 92-126 54-88 (221)
167 2lfw_A PHYR sigma-like domain; 24.0 91 0.0031 21.7 4.1 49 77-125 92-141 (157)
168 2oqg_A Possible transcriptiona 23.8 67 0.0023 20.9 3.1 37 81-119 24-60 (114)
169 2gen_A Probable transcriptiona 23.6 1.1E+02 0.0038 21.4 4.6 33 92-124 26-58 (197)
170 3b73_A PHIH1 repressor-like pr 23.4 52 0.0018 22.7 2.6 29 6-34 43-75 (111)
171 3bbz_A P protein, phosphoprote 23.4 1.1E+02 0.0038 18.3 3.7 32 121-154 7-47 (49)
172 2id6_A Transcriptional regulat 23.4 1.1E+02 0.0039 21.4 4.6 34 92-125 24-57 (202)
173 2oi8_A Putative regulatory pro 23.4 72 0.0025 23.2 3.6 36 92-127 35-70 (216)
174 2qwt_A Transcriptional regulat 23.4 1.1E+02 0.0036 21.5 4.4 34 93-126 32-65 (196)
175 1on2_A Transcriptional regulat 23.3 1.2E+02 0.004 20.6 4.5 29 91-119 20-48 (142)
176 1y0u_A Arsenical resistance op 23.1 1.1E+02 0.0037 19.5 4.1 29 91-119 41-69 (96)
177 3c1q_A General secretion pathw 23.0 67 0.0023 21.6 3.1 24 132-155 43-66 (123)
178 3cwr_A Transcriptional regulat 23.0 35 0.0012 23.8 1.7 37 91-127 35-71 (208)
179 3nqo_A MARR-family transcripti 23.0 80 0.0027 22.8 3.7 38 82-119 45-83 (189)
180 1dj8_A HDEA, protein HNS-depen 22.8 70 0.0024 21.4 3.0 70 73-150 19-88 (89)
181 2wte_A CSA3; antiviral protein 22.8 47 0.0016 25.9 2.5 38 7-44 181-223 (244)
182 3dpj_A Transcription regulator 22.8 1.1E+02 0.0038 21.0 4.4 36 91-126 26-61 (194)
183 3t9t_A Tyrosine-protein kinase 22.8 42 0.0015 24.7 2.2 47 84-130 78-126 (267)
184 2y4i_B KSR2, HKSR2, kinase sup 22.8 24 0.00084 27.0 0.8 47 84-130 104-152 (319)
185 1okr_A MECI, methicillin resis 22.7 55 0.0019 21.6 2.6 38 81-119 13-54 (123)
186 1vi0_A Transcriptional regulat 22.5 76 0.0026 22.6 3.5 35 91-125 26-60 (206)
187 3s95_A LIMK-1, LIM domain kina 22.4 38 0.0013 25.9 1.9 45 85-129 83-129 (310)
188 3vp5_A Transcriptional regulat 22.3 45 0.0016 23.5 2.2 35 92-126 31-65 (189)
189 3u5c_T 40S ribosomal protein S 22.1 50 0.0017 24.3 2.3 25 10-34 102-130 (144)
190 2pn6_A ST1022, 150AA long hypo 22.1 65 0.0022 22.3 2.9 27 93-119 17-43 (150)
191 2w25_A Probable transcriptiona 22.0 66 0.0023 22.4 3.0 28 92-119 20-47 (150)
192 3g1o_A Transcriptional regulat 21.9 89 0.003 23.0 3.9 36 92-127 62-97 (255)
193 2qko_A Possible transcriptiona 21.9 50 0.0017 23.6 2.3 36 92-127 47-82 (215)
194 2xdn_A HTH-type transcriptiona 21.9 56 0.0019 23.2 2.6 34 92-125 30-63 (210)
195 4fvq_A Tyrosine-protein kinase 21.9 38 0.0013 25.4 1.7 44 85-128 88-133 (289)
196 2nnn_A Probable transcriptiona 21.8 71 0.0024 21.1 3.0 37 82-119 42-78 (140)
197 2p8t_A Hypothetical protein PH 21.7 62 0.0021 24.9 2.9 34 7-40 45-82 (200)
198 2kko_A Possible transcriptiona 21.7 59 0.002 21.5 2.5 38 80-119 27-64 (108)
199 2yve_A Transcriptional regulat 21.7 48 0.0017 23.2 2.2 34 92-125 23-56 (185)
200 3iqt_A Signal transduction his 21.5 1.2E+02 0.0041 21.0 4.2 35 116-150 60-94 (123)
201 2eh3_A Transcriptional regulat 21.4 49 0.0017 22.9 2.2 35 92-126 21-55 (179)
202 2imu_A Structural polyprotein 21.3 42 0.0014 19.8 1.4 10 108-117 4-13 (46)
203 2ras_A Transcriptional regulat 21.3 63 0.0022 22.8 2.8 34 92-125 30-63 (212)
204 3pas_A TETR family transcripti 21.3 87 0.003 21.4 3.5 35 92-126 27-61 (195)
205 2nx4_A Transcriptional regulat 21.2 1.1E+02 0.0039 21.3 4.2 33 92-124 29-61 (194)
206 4hcu_A Tyrosine-protein kinase 21.0 47 0.0016 24.7 2.1 47 84-130 80-128 (269)
207 2a19_B Interferon-induced, dou 21.0 35 0.0012 25.5 1.3 46 84-129 95-143 (284)
208 4eqm_A Protein kinase; transfe 21.0 41 0.0014 25.7 1.8 46 85-130 87-133 (294)
209 3dtc_A Mitogen-activated prote 20.8 76 0.0026 23.4 3.3 46 83-128 80-125 (271)
210 3lxl_A Tyrosine-protein kinase 20.8 29 0.00099 26.9 0.9 47 84-130 101-149 (327)
211 2jj7_A Hemolysin II regulatory 20.6 50 0.0017 22.8 2.1 36 92-127 26-61 (186)
212 3m2w_A MAP kinase-activated pr 20.4 32 0.0011 26.3 1.0 47 82-128 88-137 (299)
213 1i1g_A Transcriptional regulat 20.3 77 0.0026 21.5 3.0 27 93-119 18-44 (141)
214 3e7q_A Transcriptional regulat 20.3 94 0.0032 21.6 3.5 35 92-126 33-67 (215)
215 3egq_A TETR family transcripti 20.3 43 0.0015 22.8 1.6 36 92-127 23-58 (170)
216 2i6l_A Mitogen-activated prote 20.2 26 0.00089 26.6 0.5 47 85-132 98-144 (320)
No 1
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.9e-49 Score=373.94 Aligned_cols=158 Identities=26% Similarity=0.454 Sum_probs=149.4
Q ss_pred cchhHHHHHHHHHHHhhhCCccCCCccchhhHHHhhhcCCCceeeec--cC-------cH--------------------
Q psy6286 2 SLLHMEELKCRKRVLRRLGYATEADVIEMKGRVACELSKSEETVILT--IN-------DK-------------------- 52 (159)
Q Consensus 2 ~~~~~~e~~~~~~vL~~lgyid~~~~vt~kGrva~~I~s~~eLlltE--f~-------p~-------------------- 52 (159)
++.++++|+++++||++|||||++++||+|||+||||+|++||++|| |+ |.
T Consensus 795 ~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~te~~~~~~~~~l~~~~~~a~ls~~v~~~~~~~~~~ 874 (997)
T 4a4z_A 795 NLSLLPDYEKRLAVLKDTEFIDQNHNVLLKGRVACEINSGYELVLTELILDNFLGSFEPEEIVALLSVFVYEGKTREEEP 874 (997)
T ss_dssp --CHHHHHHHHHHHHHHTTSBCTTCCBCHHHHHHTTCCSSCHHHHHHHHHSSGGGGCCHHHHHHHHGGGSCCCCCSSCCC
T ss_pred hHHHHHHHHHHHHHHHHcCCcCCCCcccHHhHHHhhhcCccHHHHHHHHHhCcccCCCHHHHHHHHhhhhccccCCCCCC
Confidence 57889999999999999999999999999999999999999999999 33 10
Q ss_pred --------------HHHHHHHHHHHHHcCCCCCh--hhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHH
Q psy6286 53 --------------LELARHIARISIESKLDLDE--DSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRR 116 (159)
Q Consensus 53 --------------~~i~~~i~~~~~~~~l~~~~--~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rR 116 (159)
+++|++|++++.+|+++++. ++|+++|+||||++||+||+|+||++||++|+++||||||||||
T Consensus 875 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~r 954 (997)
T 4a4z_A 875 PIVTPRLAKGKQRIEEIYKKMLCVFNTHQIPLTQDEAEFLDRKRFAMMNVVYEWARGLSFKEIMEMSPEAEGTVVRVITW 954 (997)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHGGGSCTTTTHHHHHHHHHTCCHHHHHHTCSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchhhhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHH
Confidence 79999999999999999864 67999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCChHHHHHHHHHHHhhcCCcccccccCC
Q psy6286 117 LEEVLRQLVQASRNIGNTLLEEKFNEAIKTVKRDIFLEILENL 159 (159)
Q Consensus 117 l~elLrql~~a~~~ig~~~L~~k~~~a~~~I~RdIV~~~sl~~ 159 (159)
|+|+||||++||++|||++|.+||++|+++|||||||++||||
T Consensus 955 l~e~~~q~~~aa~~~g~~~l~~k~~~a~~~i~R~iv~~~slyl 997 (997)
T 4a4z_A 955 LDEICREVKTASIIIGNSTLHMKMSRAQELIKRDIVFAASLYL 997 (997)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCGGGGCCCTTC
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCeeecccccC
Confidence 9999999999999999999999999999999999999999997
No 2
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-49 Score=370.76 Aligned_cols=158 Identities=44% Similarity=0.820 Sum_probs=150.9
Q ss_pred cchhHHHHHHHHHHHhhhCCccCCCccchhhHHHhhhcCCCceeeec------cC---cH--------------------
Q psy6286 2 SLLHMEELKCRKRVLRRLGYATEADVIEMKGRVACELSKSEETVILT------IN---DK-------------------- 52 (159)
Q Consensus 2 ~~~~~~e~~~~~~vL~~lgyid~~~~vt~kGrva~~I~s~~eLlltE------f~---p~-------------------- 52 (159)
++.+++||+++++||++|||||++++||+|||+||+|++++||++|| |+ |.
T Consensus 812 ~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~ 891 (1010)
T 2xgj_A 812 AVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPR 891 (1010)
T ss_dssp SCTTHHHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCC
T ss_pred hhhhHHHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCC
Confidence 67889999999999999999998889999999999999999999999 44 11
Q ss_pred ------------HHHHHHHHHHHHHcCCCCChhhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHH
Q psy6286 53 ------------LELARHIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEV 120 (159)
Q Consensus 53 ------------~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~el 120 (159)
+++|++|++++.+|++++++++|+++|+|+||++||+||+|+||++||++|+++|||||||||||+|+
T Consensus 892 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~el 971 (1010)
T 2xgj_A 892 LKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEEL 971 (1010)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHTSCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhcccCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCChHHHHHHHHHHHhhcCCcccccccCC
Q psy6286 121 LRQLVQASRNIGNTLLEEKFNEAIKTVKRDIFLEILENL 159 (159)
Q Consensus 121 Lrql~~a~~~ig~~~L~~k~~~a~~~I~RdIV~~~sl~~ 159 (159)
||||++|+++|||++|.+||++|+++|||||||++|||+
T Consensus 972 l~q~~~a~~~~g~~~l~~~~~~a~~~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A 972 VKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1010 (1010)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHSCGGGGCCCC-C
T ss_pred HHHHHHHhhhcCCHHHHHHHHHHHHhccCCeEecccccC
Confidence 999999999999999999999999999999999999997
No 3
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-49 Score=377.80 Aligned_cols=158 Identities=44% Similarity=0.823 Sum_probs=140.1
Q ss_pred cchhHHHHHHHHHHHhhhCCccCCCccchhhHHHhhhcCCCceeeec------cC---c--------------------H
Q psy6286 2 SLLHMEELKCRKRVLRRLGYATEADVIEMKGRVACELSKSEETVILT------IN---D--------------------K 52 (159)
Q Consensus 2 ~~~~~~e~~~~~~vL~~lgyid~~~~vt~kGrva~~I~s~~eLlltE------f~---p--------------------~ 52 (159)
++++++||+++++||++|||||++++||+|||+||+|++++||++|| |+ | .
T Consensus 910 ~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~~e~~~~~~~~~l~~~~~aa~~s~~v~~~~~~~~~~ 989 (1108)
T 3l9o_A 910 AVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPR 989 (1108)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCTTTCCCSHHHHHHHC-CCTTHHHHHHHHHHHCCCSSCCTHHHHHTCC------------
T ss_pred hhHHHHHHHHHHHHHHHcCCcCCCCcCcHHhHHHHHhcCccHHHHHHHHHhCcccCCCHHHHHHHHhheeeecccCCCCC
Confidence 57889999999999999999998899999999999999999999999 44 2 1
Q ss_pred ------------HHHHHHHHHHHHHcCCCCChhhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHH
Q psy6286 53 ------------LELARHIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEV 120 (159)
Q Consensus 53 ------------~~i~~~i~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~el 120 (159)
+++|++|++++.+|++++++++|++.|+|+||++||+||+|+||++||++|+++|||||||||||+|+
T Consensus 990 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~f~~i~~~t~~~eG~~vR~~~rl~e~ 1069 (1108)
T 3l9o_A 990 LKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEEL 1069 (1108)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHCCSCHHHHHHHHC----CCGGGTC--CHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHhccCCChHHHHHHHHHhCCCCHHHHHhcCCCCchhhhhHHHHHHHH
Confidence 79999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCChHHHHHHHHHHHhhcCCcccccccCC
Q psy6286 121 LRQLVQASRNIGNTLLEEKFNEAIKTVKRDIFLEILENL 159 (159)
Q Consensus 121 Lrql~~a~~~ig~~~L~~k~~~a~~~I~RdIV~~~sl~~ 159 (159)
||||++||++|||++|.+||++|+++|||||||++||||
T Consensus 1070 l~q~~~aa~~~g~~~l~~k~~~a~~~i~r~iv~~~slyl 1108 (1108)
T 3l9o_A 1070 VKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1108 (1108)
T ss_dssp HSCCCC----CCCHHHHHHHHHHHHHHHHHTCCCCCCC-
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHhcCCEEeeccccC
Confidence 999999999999999999999999999999999999997
No 4
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.62 E-value=0.025 Score=50.69 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=98.5
Q ss_pred HHHHHHHHHhhhCCccCCC---ccchhhHHHhhhcCCCcee---eec---------------------cC-cH--HHHHH
Q psy6286 8 ELKCRKRVLRRLGYATEAD---VIEMKGRVACELSKSEETV---ILT---------------------IN-DK--LELAR 57 (159)
Q Consensus 8 e~~~~~~vL~~lgyid~~~---~vt~kGrva~~I~s~~eLl---ltE---------------------f~-p~--~~i~~ 57 (159)
.+..-++.|.++|+|+.++ .+|.-|+.+++.+-+-.+. +.- |. +. ..-..
T Consensus 472 ~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~ 551 (715)
T 2va8_A 472 YFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPLVSVGRNEEE 551 (715)
T ss_dssp HHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHH
T ss_pred HHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCcccccCccChHHHH
Confidence 4778899999999998763 8999999999987632210 000 11 00 11111
Q ss_pred HHHHHHHH---cC---CCCChhhhhc-cCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhhhh
Q psy6286 58 HIARISIE---SK---LDLDEDSYVN-QFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRN 130 (159)
Q Consensus 58 ~i~~~~~~---~~---l~~~~~~~~~-~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~~~ 130 (159)
.+.+...+ .+ .+.....|.. ...+...-+..+|.++.++.+|++..+++.||+........-+++.+...+..
T Consensus 552 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~ 631 (715)
T 2va8_A 552 ELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRE 631 (715)
T ss_dssp HHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22222211 11 1111111110 02234567889999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHHhhcCCcc
Q psy6286 131 IGNTLLEEKFNEAIKTVKRDIF 152 (159)
Q Consensus 131 ig~~~L~~k~~~a~~~I~RdIV 152 (159)
.|...+...+......|..|+-
T Consensus 632 ~~~~~~~~~l~~l~~rl~~gv~ 653 (715)
T 2va8_A 632 LKLNEHADKLRILNLRVRDGIK 653 (715)
T ss_dssp TTCHHHHHHHHHHHHHHHHTCC
T ss_pred hCcHHHHHHHHHHHHHHHcCCC
Confidence 9998888888777777766653
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.13 E-value=0.11 Score=46.75 Aligned_cols=145 Identities=14% Similarity=0.028 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhhCCcc-CCC---ccchhhHHHhhhcCCCce---eee------------c----------cC--c-HHH
Q psy6286 7 EELKCRKRVLRRLGYAT-EAD---VIEMKGRVACELSKSEET---VIL------------T----------IN--D-KLE 54 (159)
Q Consensus 7 ~e~~~~~~vL~~lgyid-~~~---~vt~kGrva~~I~s~~eL---llt------------E----------f~--p-~~~ 54 (159)
+.+..-++.|.++|+|+ .++ .+|.-|+.+++.+-+-.. ++. + |+ | +..
T Consensus 454 ~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~ 533 (720)
T 2zj8_A 454 EKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKR 533 (720)
T ss_dssp HHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHH
T ss_pred HHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHH
Confidence 35677889999999998 544 799999999997763221 000 0 11 0 011
Q ss_pred HHHHHHHHHHHc---C---CCCCh--hh--hhc-cCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy6286 55 LARHIARISIES---K---LDLDE--DS--YVN-QFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQ 123 (159)
Q Consensus 55 i~~~i~~~~~~~---~---l~~~~--~~--~~~-~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrq 123 (159)
-...+..+..++ . ++... ++ +.. ...+-..-+.+.|.++.++.+|.+..++..||+.....+..-+++.
T Consensus 534 e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a 613 (720)
T 2zj8_A 534 EFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYS 613 (720)
T ss_dssp HHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHH
Confidence 111222221111 1 12111 00 100 0223456788999999999999999999999999999999999999
Q ss_pred HHHhhhhhCChHHHHHHHHHHHhhcCCc
Q psy6286 124 LVQASRNIGNTLLEEKFNEAIKTVKRDI 151 (159)
Q Consensus 124 l~~a~~~ig~~~L~~k~~~a~~~I~RdI 151 (159)
+...+...|...+...+.+-...|.-|+
T Consensus 614 ~~~i~~~~g~~~~~~~l~~l~~rl~~gv 641 (720)
T 2zj8_A 614 LKEIAKVLGAYEIVDYLETLRVRVKYGI 641 (720)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHcCC
Confidence 9999998887666555555554444433
No 6
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.62 E-value=0.15 Score=45.63 Aligned_cols=123 Identities=18% Similarity=0.212 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhhhCCccCC--CccchhhHHHhhhcCCCce---ee--------ec------------cC-----cHHHHH
Q psy6286 7 EELKCRKRVLRRLGYATEA--DVIEMKGRVACELSKSEET---VI--------LT------------IN-----DKLELA 56 (159)
Q Consensus 7 ~e~~~~~~vL~~lgyid~~--~~vt~kGrva~~I~s~~eL---ll--------tE------------f~-----p~~~i~ 56 (159)
+.+..-++.|.++|+|+.+ ..+|.-|+.++..+-+-.. ++ ++ |+ | .+
T Consensus 453 ~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~-~e-- 529 (702)
T 2p6r_A 453 YELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRK-TD-- 529 (702)
T ss_dssp HHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCT-TT--
T ss_pred HHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCC-ch--
Confidence 3567788999999999876 6899999999987752211 00 00 11 1 11
Q ss_pred HHHHHHHHH--cCC-CCC---h---hhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 57 RHIARISIE--SKL-DLD---E---DSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 57 ~~i~~~~~~--~~l-~~~---~---~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
..+.+...+ +++ +.+ . +++. ..+...-+..+|.+|.++.+|++..++..||+.....+..-+++-+...
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i 607 (702)
T 2p6r_A 530 SWVEEEAFRLRKELSYYPSDFSVEYDWFL--SEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRI 607 (702)
T ss_dssp HHHHHHHHHHGGGSSCCCCTTSTTHHHHH--HHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCcchhhhhhhhhh--hhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHH
Confidence 222222222 222 111 0 1111 2234667899999999999999999999999999999999999998888
Q ss_pred hhhhCCh
Q psy6286 128 SRNIGNT 134 (159)
Q Consensus 128 ~~~ig~~ 134 (159)
+...|..
T Consensus 608 ~~~~g~~ 614 (702)
T 2p6r_A 608 AEEVGNT 614 (702)
T ss_dssp HHHTTCC
T ss_pred HHHcCHH
Confidence 8877754
No 7
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=93.10 E-value=0.28 Score=35.68 Aligned_cols=65 Identities=20% Similarity=0.373 Sum_probs=52.2
Q ss_pred cCCchHHHHHHHh-hCCCCHHHHHhhcCC-CccHHHHHHHHHHHHHHHHHHhhhhhCChHHHHHHHHH
Q psy6286 78 QFKPSLMDVVHAW-CEGASFLKVCSITDI-FEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKFNEA 143 (159)
Q Consensus 78 ~~~~~l~~~v~~W-a~G~~f~~i~~~t~l-~EG~iVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a 143 (159)
.+++.+++-+..+ +.|.|+.+||...++ ..-+|-||+.+=.|+..++..|-.. +...+.+.+.+.
T Consensus 12 k~t~e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~~~ef~e~~~~Ar~~-~~~~~~~~~~~i 78 (140)
T 4dyq_A 12 DYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAKHEDFRDKYAKATEA-RADSIFEEIFEI 78 (140)
T ss_dssp SCCTTHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHHCHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHcCHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 6888999888888 699999999999999 7899999999999999888887432 334444444443
No 8
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=85.19 E-value=1.7 Score=26.55 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=38.4
Q ss_pred cCCchHHHHHHH-hhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 78 QFKPSLMDVVHA-WCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 78 ~~~~~l~~~v~~-Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.+.+.--.++.. +..|.|+.+|.+..+++++.+=+.+.|...-|++.-..
T Consensus 15 ~L~~~~r~il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~ 65 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 65 (70)
T ss_dssp SSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC----
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhc
Confidence 455555566654 68999999999999999999999999988888765543
No 9
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=85.13 E-value=0.62 Score=30.74 Aligned_cols=49 Identities=16% Similarity=0.235 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHcCCCCChhhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy6286 54 ELARHIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVL 121 (159)
Q Consensus 54 ~i~~~i~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elL 121 (159)
..+.+.+..-.+.+++.+ -+..+++ +++..-++.||||||.++.++...
T Consensus 17 ~~c~rYA~~F~~~ri~e~---mL~Dl~~----------------~~Lr~LGi~eGDIIrVmk~l~~k~ 65 (72)
T 3idw_A 17 SNCQRYTINFDREQLTED---MMPDINN----------------SMLRTLGLREGDIVRVMKHLDKKF 65 (72)
T ss_dssp HHHHHHHHHHHHTTCCGG---GGGGCCH----------------HHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCHH---HHhhCCH----------------HHHHHcCCchhhHHHHHHHHHHHh
Confidence 455566665566665532 2234444 366667889999999999988654
No 10
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=80.49 E-value=1.5 Score=24.44 Aligned_cols=34 Identities=6% Similarity=-0.117 Sum_probs=29.2
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHH
Q psy6286 84 MDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRL 117 (159)
Q Consensus 84 ~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl 117 (159)
..++..+.+|.|..+|.+..++....+-|++++.
T Consensus 12 ~~i~~~~~~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 12 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 3666778899999999999999999999988753
No 11
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=77.92 E-value=14 Score=25.34 Aligned_cols=69 Identities=10% Similarity=0.109 Sum_probs=50.4
Q ss_pred ccCCchHHHHHHH-hhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhhhhhCChHHHHHHHHHHHhhc
Q psy6286 77 NQFKPSLMDVVHA-WCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKFNEAIKTVK 148 (159)
Q Consensus 77 ~~~~~~l~~~v~~-Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a~~~I~ 148 (159)
..+.+.--.++.. ...|.|..+|.+..+++++.+=+.+.|...-|++.-... +..+..++.....+.|+
T Consensus 24 ~~L~~~~r~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~---~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL---ELYQKFEQRREIYDEMK 93 (113)
T ss_dssp GGSCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH---hHHhHHHHHHHHHHHHH
Confidence 3455666666655 489999999999999999999999999988888765443 23444555555555554
No 12
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=75.83 E-value=7.7 Score=25.27 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=40.0
Q ss_pred cCCchHHHHHHH-hhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 78 QFKPSLMDVVHA-WCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 78 ~~~~~l~~~v~~-Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.+.+.--.++.. ...|.|..+|.+..++.++.+=+.+.|...-|++.-.
T Consensus 37 ~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 455555566665 6899999999999999999999999988888877543
No 13
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=72.87 E-value=3.8 Score=26.77 Aligned_cols=49 Identities=12% Similarity=0.118 Sum_probs=36.8
Q ss_pred CCchH-HHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 79 FKPSL-MDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 79 ~~~~l-~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
+.+.+ ..++..+..|.|..+|++..++....|-||+++....-.+....
T Consensus 23 ys~e~k~~~v~~~~~g~s~~~iA~~~gIs~sTl~rW~k~~~~~~~~~~~~ 72 (87)
T 2elh_A 23 LTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKLRFMSRQS 72 (87)
T ss_dssp CCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHhccccccCC
Confidence 34444 35566667899999999999999999999998877655544433
No 14
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=72.33 E-value=6.9 Score=23.90 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=37.0
Q ss_pred cCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy6286 78 QFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLR 122 (159)
Q Consensus 78 ~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLr 122 (159)
.+.+.-..++..++.|.|..+|.+..++.++.+=+.+.|+.+-|+
T Consensus 11 ~L~~~e~~il~~~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 11 LLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 466666677877899999999999999999999888877665553
No 15
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=70.43 E-value=9.3 Score=26.42 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=40.6
Q ss_pred cCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 78 QFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 78 ~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.+.+.--.++..+..|.|+.+|.+..+++++.+=+.+.|...-|++.-..
T Consensus 109 ~L~~~~r~v~~~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 109 NFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp HSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666789999999999999999999999888888888775543
No 16
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=67.73 E-value=4.5 Score=32.43 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhhCCccCCCccchhhHHHhhhcC
Q psy6286 7 EELKCRKRVLRRLGYATEADVIEMKGRVACELSK 40 (159)
Q Consensus 7 ~e~~~~~~vL~~lgyid~~~~vt~kGrva~~I~s 40 (159)
+.+.+=+..|..+|-+|+++.+|.-||..+++-.
T Consensus 18 ~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl 51 (270)
T 3i4u_A 18 ETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPL 51 (270)
T ss_dssp HHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCC
Confidence 3456678899999999999999999999998754
No 17
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=66.60 E-value=9.1 Score=24.59 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=38.1
Q ss_pred ccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy6286 77 NQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLR 122 (159)
Q Consensus 77 ~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLr 122 (159)
..+.+.-..++...+.|.|..+|.+..++.++.+=+.++|...-|+
T Consensus 20 ~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 20 NQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp GGSCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 4677777788888899999999999999999999887777665554
No 18
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=66.51 E-value=3.2 Score=23.36 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=28.3
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHH
Q psy6286 84 MDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRL 117 (159)
Q Consensus 84 ~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl 117 (159)
-.++..|.+|.|..+|.+..++...++-|++++.
T Consensus 12 ~~i~~l~~~g~s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 12 EQISRLLEKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHHHTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHc
Confidence 3556667899999999999999999998887653
No 19
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=65.51 E-value=4 Score=25.94 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=21.0
Q ss_pred cCCchHHHHHHHhhCCC-CHHHHHh
Q psy6286 78 QFKPSLMDVVHAWCEGA-SFLKVCS 101 (159)
Q Consensus 78 ~~~~~l~~~v~~Wa~G~-~f~~i~~ 101 (159)
.|++.+...+..|++|. |++++.+
T Consensus 27 Epd~~~l~~~erwv~GEis~~e~i~ 51 (61)
T 3shg_B 27 EPDPQVVAQMERVVVGELETSDVIK 51 (61)
T ss_dssp CCCHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHH
Confidence 47889999999999998 8988875
No 20
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=65.28 E-value=7.8 Score=24.08 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=36.3
Q ss_pred ccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy6286 77 NQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLR 122 (159)
Q Consensus 77 ~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLr 122 (159)
..+.+.--.++..+..|.|..+|.+..++.++.+=+.+.|...-|+
T Consensus 15 ~~L~~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 15 QTLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHHCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3455556677777799999999999999999988887777665554
No 21
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=64.61 E-value=9.3 Score=22.53 Aligned_cols=37 Identities=14% Similarity=0.025 Sum_probs=30.0
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy6286 85 DVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVL 121 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elL 121 (159)
.++...+.|.|..+|-+..+++++++=..+.|+.+-|
T Consensus 5 ~vl~l~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 5 QVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4555579999999999999999999887777665544
No 22
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=64.33 E-value=11 Score=25.72 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=29.8
Q ss_pred hHHHHHHHhh-CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWC-EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa-~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++.-- .|.+..+|.+..++..+.+-|.+++|++
T Consensus 35 ~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 35 HTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp HHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4444444432 3779999999999999999999999876
No 23
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=62.82 E-value=14 Score=25.15 Aligned_cols=36 Identities=11% Similarity=0.118 Sum_probs=29.6
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++ ..|.+..+|.+..++..+.+-|.+++|.+
T Consensus 41 ~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 41 LVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp HHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 4444444 66779999999999999999999999876
No 24
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=61.60 E-value=13 Score=25.72 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=25.9
Q ss_pred chHHHHHHHhh-CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 81 PSLMDVVHAWC-EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 81 ~~l~~~v~~Wa-~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+.++..++... .|.+..+|.+..++..+.+-|.+.+|++
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 45555565543 6889999999999999999999999876
No 25
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=61.24 E-value=20 Score=22.93 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=29.0
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..+.. ..+.+..+|.+..++..+.+-|.+++|.+
T Consensus 24 ~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 24 RIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444432 36779999999999999999999988876
No 26
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=60.46 E-value=8.7 Score=27.08 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=38.9
Q ss_pred HHHHHHHHHcCCCCChhhhhccCCchHHHHHHHhhCC-CCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 57 RHIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEG-ASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 57 ~~i~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~Wa~G-~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..+......+|+.. ..+.+...++.+-.| .+.++|.+...+..+.+-|.+.||++
T Consensus 22 ~~~~~~l~~~gLt~--------~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 22 GEVDAVVKPYGLTF--------ARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp HHHHHHHGGGTCCH--------HHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH--------HHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444455666552 234455556666554 69999999999999999999998875
No 27
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=60.23 E-value=19 Score=22.13 Aligned_cols=45 Identities=9% Similarity=0.019 Sum_probs=35.1
Q ss_pred cCCchHHHHHHHhh-----CCCCHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy6286 78 QFKPSLMDVVHAWC-----EGASFLKVCSITDIFEGSIIRCMRRLEEVLR 122 (159)
Q Consensus 78 ~~~~~l~~~v~~Wa-----~G~~f~~i~~~t~l~EG~iVR~~rRl~elLr 122 (159)
.+.+.--.++..-. .|.|+.+|-+..+++++.+=+...|...-|+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45555445554433 8999999999999999999998888877777
No 28
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=59.96 E-value=14 Score=25.55 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCCChhhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 57 RHIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 57 ~~i~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..+.....++++.. ..+.++..++.--.+.+..+|.+...+..+.+-|.+.+|++
T Consensus 26 ~~~~~~l~~~glt~--------~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 80 (150)
T 3fm5_A 26 GAVNKALVPTGLRV--------RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEE 80 (150)
T ss_dssp HHHHHHHGGGTCCH--------HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCH--------HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 33444445566542 22344444433223569999999999999999999999875
No 29
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=59.08 E-value=22 Score=24.00 Aligned_cols=27 Identities=15% Similarity=0.004 Sum_probs=24.9
Q ss_pred CCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 93 GASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 93 G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
|.+..+|.+..++..+.+-|.+++|++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 579999999999999999999998876
No 30
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=58.55 E-value=16 Score=24.81 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=36.5
Q ss_pred HHHHHHHHHcCCCCChhhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 57 RHIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 57 ~~i~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..+......+|+..+ ....+.+++.-..+.+..+|.+..++..+++-|.+.+|.+
T Consensus 13 ~~~~~~~~~~gl~~~--------~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~ 67 (152)
T 1ku9_A 13 ELFSELAKIHGLNKS--------VGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEE 67 (152)
T ss_dssp HHHHHHHHHTTCCHH--------HHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChh--------HHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334445556665422 2234444422235679999999999999999999888875
No 31
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=58.04 E-value=11 Score=25.78 Aligned_cols=38 Identities=18% Similarity=0.038 Sum_probs=30.4
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 81 PSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 81 ~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+.++..++.- .|.+..+|.+..++..+.+-|.+.+|.+
T Consensus 40 ~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 40 WSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp HHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 3444444443 7789999999999999999999998876
No 32
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=57.98 E-value=9.5 Score=27.36 Aligned_cols=39 Identities=18% Similarity=0.258 Sum_probs=30.8
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 81 PSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 81 ~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+.++..++....|.+..+|.+..++..+.+-|.+++|++
T Consensus 56 ~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 56 WVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp HHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 344444444445689999999999999999999999876
No 33
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=57.61 E-value=18 Score=23.81 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=37.5
Q ss_pred ccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy6286 77 NQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLR 122 (159)
Q Consensus 77 ~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLr 122 (159)
..+.+.--.++...+.|.|..+|.+..++.++.+=..+.|...-|+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 71 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 71 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 3566666778877899999999999999999998887777766554
No 34
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=57.45 E-value=22 Score=24.31 Aligned_cols=38 Identities=3% Similarity=-0.032 Sum_probs=29.9
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 81 PSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 81 ~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+.++..++. ..|.+..+|.+..++..+.+-|.+.+|++
T Consensus 34 ~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 71 (145)
T 3g3z_A 34 FAVLYTLAT-EGSRTQKHIGEKWSLPKQTVSGVCKTLAG 71 (145)
T ss_dssp HHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444433 35689999999999999999999998876
No 35
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=57.43 E-value=22 Score=25.07 Aligned_cols=52 Identities=13% Similarity=0.192 Sum_probs=44.7
Q ss_pred chHHHHHHHh-hCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhhhhhC
Q psy6286 81 PSLMDVVHAW-CEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIG 132 (159)
Q Consensus 81 ~~l~~~v~~W-a~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~~~ig 132 (159)
+....+.+.- ..|.|=.++|+..++..|-|-|+++||..+=+-+.+.+...-
T Consensus 47 ekII~ALrdyLV~G~srkeaCe~~gV~~syfS~~L~rL~~v~~~V~~l~~fY~ 99 (111)
T 3m8j_A 47 DRVILAMKDYLVSGHSRKDVCEKYQMNNGYFSTTLGRLTRLNVLVARLAPYYT 99 (111)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4555666665 699999999999999999999999999999999998887653
No 36
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=57.08 E-value=20 Score=24.55 Aligned_cols=37 Identities=5% Similarity=-0.008 Sum_probs=29.4
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++. ..|.+..+|.+..++..+.+-|.+++|++
T Consensus 46 ~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 46 VALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp HHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 34444433 35789999999999999999999999876
No 37
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=56.79 E-value=12 Score=22.83 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=35.4
Q ss_pred cCCchHHHHHHHhh-----CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy6286 78 QFKPSLMDVVHAWC-----EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQ 123 (159)
Q Consensus 78 ~~~~~l~~~v~~Wa-----~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrq 123 (159)
.+.+.--.++..-. .|.|+.||-+..+++++.+=+.+.|...-|++
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 34555556665554 89999999999999999998888887766654
No 38
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=56.76 E-value=12 Score=24.53 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=27.4
Q ss_pred HHHHHhh-C-CCCHHHHHhhcCCCccHHHHHHHHHH
Q psy6286 85 DVVHAWC-E-GASFLKVCSITDIFEGSIIRCMRRLE 118 (159)
Q Consensus 85 ~~v~~Wa-~-G~~f~~i~~~t~l~EG~iVR~~rRl~ 118 (159)
.+|..+. . |.|..+|+...++..+.+-||+++..
T Consensus 13 ~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 13 DAVALYENSDGASLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp HHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHh
Confidence 3444443 4 89999999999999999999998754
No 39
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=56.75 E-value=16 Score=24.85 Aligned_cols=38 Identities=8% Similarity=0.091 Sum_probs=30.0
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 81 PSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 81 ~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+.++..++. ..|.+..+|.+..++..+.+-|.+++|.+
T Consensus 36 ~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 36 FDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp HHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 344444443 46789999999999999999999998876
No 40
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=56.65 E-value=14 Score=23.98 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=37.7
Q ss_pred ccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy6286 77 NQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLR 122 (159)
Q Consensus 77 ~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLr 122 (159)
..+.+.-..++...+.|.|..+|.+..++.++.+=..+.|...-|+
T Consensus 28 ~~Lt~~e~~vl~l~~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4577777788877899999999999999999998887777665543
No 41
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=56.58 E-value=21 Score=23.99 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=25.8
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.|.+..+|.+..++..+.+-|.+++|++
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 5779999999999999999999999876
No 42
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=56.38 E-value=21 Score=25.25 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=27.0
Q ss_pred hHHHHHHHh-hCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAW-CEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~W-a~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++.- -.|.+..+|.+..++..+.+-|.+.+|++
T Consensus 50 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 88 (168)
T 3u2r_A 50 NTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDD 88 (168)
T ss_dssp HHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 444444443 24789999999999999999999999875
No 43
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=55.39 E-value=30 Score=24.06 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCCCChhhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 57 RHIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 57 ~~i~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..+......+|+.. ..+.++..++. ..|.+..+|.+..++..+.+-|.+.+|++
T Consensus 37 ~~~~~~l~~~~lt~--------~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 37 IYIGKKIEPYGIGS--------GQFPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp HHHHHHHGGGTCCT--------TTHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCH--------HHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444445566653 23344444433 35679999999999999999999999876
No 44
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=55.11 E-value=47 Score=22.69 Aligned_cols=51 Identities=10% Similarity=0.218 Sum_probs=41.5
Q ss_pred ccCCchHHHHHHH-hhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 77 NQFKPSLMDVVHA-WCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 77 ~~~~~~l~~~v~~-Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
..+.|.--.++.. +..|.|..+|.+..+++++.+=+.+.|...-|++.-..
T Consensus 21 ~~L~~~~r~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~ 72 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMK 72 (113)
T ss_dssp GGSCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666665 58999999999999999999999999998888876544
No 45
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=55.04 E-value=19 Score=24.21 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=26.4
Q ss_pred hh-CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 90 WC-EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 90 Wa-~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
|. .|.+..+|.+..++..+.+-|.+++|.+
T Consensus 43 ~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 43 AKSGKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp HHSCSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred HHcCCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 44 4569999999999999999999999887
No 46
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=54.40 E-value=30 Score=23.35 Aligned_cols=28 Identities=11% Similarity=0.179 Sum_probs=25.5
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.|.+..+|.+..++..+.+-|.+++|++
T Consensus 51 ~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 51 DSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp SCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 5679999999999999999999999876
No 47
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=54.21 E-value=30 Score=24.01 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=30.2
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEV 120 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~el 120 (159)
.++..++. ..|.+..+|.+..++..+.+-|.+++|++-
T Consensus 53 ~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~ 90 (162)
T 2fa5_A 53 RVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp HHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 44444443 467899999999999999999999998763
No 48
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=53.64 E-value=23 Score=23.99 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=25.3
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.|.+..+|.+..++..+.+-|.+++|++
T Consensus 42 ~~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 42 PGIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 4579999999999999999999999876
No 49
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=53.51 E-value=19 Score=23.81 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=29.8
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 85 DVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..+.+|.|..+|.+..++...++-||++|..+
T Consensus 25 ~i~~~~~~g~s~~~ia~~lgis~~Tv~~w~~~~~~ 59 (128)
T 1pdn_C 25 KIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQE 59 (128)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 45555679999999999999999999999998654
No 50
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=53.17 E-value=25 Score=23.98 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=26.8
Q ss_pred hhCCCCHHHHHhhcCCCccHHHHHHHHHHHH
Q psy6286 90 WCEGASFLKVCSITDIFEGSIIRCMRRLEEV 120 (159)
Q Consensus 90 Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~el 120 (159)
|..|.+..+|.+..++..+.+-|.+++|++-
T Consensus 47 ~~~~~~~~~la~~l~~~~~tvs~~l~~Le~~ 77 (144)
T 3f3x_A 47 SEEPRSMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp HHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCChhHHHHHHHHHHHC
Confidence 4455599999999999999999999998873
No 51
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=52.19 E-value=23 Score=24.47 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=29.9
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 81 PSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 81 ~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+.++..++. ..|.+..+|.+..++..+.+-|.+.+|++
T Consensus 44 ~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 44 YLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp HHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444443 36779999999999999999999999875
No 52
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=51.72 E-value=9.7 Score=25.51 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhhhCCccCC--C-ccchhhHHHhh
Q psy6286 6 MEELKCRKRVLRRLGYATEA--D-VIEMKGRVACE 37 (159)
Q Consensus 6 ~~e~~~~~~vL~~lgyid~~--~-~vt~kGrva~~ 37 (159)
...+...++.|++.|||... + .+|.||+-+-+
T Consensus 34 ~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l~ 68 (95)
T 1r7j_A 34 YALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLE 68 (95)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEECCeeEEChhHHHHHH
Confidence 46788999999999999652 2 89999986554
No 53
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=51.59 E-value=39 Score=23.57 Aligned_cols=54 Identities=15% Similarity=0.049 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCCChhhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 57 RHIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 57 ~~i~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..+.....++|+.. ..+.++..++. ..|.+..+|.+..++..+.+-|.+.+|++
T Consensus 33 ~~~~~~l~~~glt~--------~q~~iL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 33 KYLTEHLSALEISL--------PQFTALSVLAA-KPNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp HHHHHHHHTTTCCH--------HHHHHHHHHHH-CTTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCH--------HHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444445566542 22344444433 35789999999999999999999999875
No 54
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=51.52 E-value=24 Score=23.61 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=28.8
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++. ..|.+..+|.+..++..+.+-|.+++|++
T Consensus 33 ~iL~~l~~-~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 33 ACLLRIHR-EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp HHHHHHHH-STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33443433 36679999999999999999999998876
No 55
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=51.17 E-value=42 Score=22.72 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=26.5
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++. ..|.+..+|.+..++..+.+-|.+.+|++
T Consensus 41 ~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 41 HVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp HHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34444433 25789999999999999999999999876
No 56
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=51.05 E-value=20 Score=24.17 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=36.4
Q ss_pred cCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHH
Q psy6286 78 QFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVL 121 (159)
Q Consensus 78 ~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elL 121 (159)
.+.+.-..++..++.|.|..||.+..++.++.+=..+.|+.+-|
T Consensus 34 ~Lt~re~~Vl~l~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 34 RLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 56777778888889999999999999999999887777655443
No 57
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=51.01 E-value=23 Score=24.36 Aligned_cols=31 Identities=16% Similarity=0.063 Sum_probs=26.7
Q ss_pred Hhh-CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 89 AWC-EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 89 ~Wa-~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
-|. .|.+..+|.+..++..+.+-|.+++|++
T Consensus 50 l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 50 IYSTPGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp HHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344 4579999999999999999999999877
No 58
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=50.23 E-value=13 Score=33.87 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhhCCccCCCccchhhHHHhhhcC
Q psy6286 7 EELKCRKRVLRRLGYATEADVIEMKGRVACELSK 40 (159)
Q Consensus 7 ~e~~~~~~vL~~lgyid~~~~vt~kGrva~~I~s 40 (159)
..+..-++.|..+|.||+++.+|.-|+.++++..
T Consensus 489 ~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl 522 (773)
T 2xau_A 489 ETMMRALEELNYLACLDDEGNLTPLGRLASQFPL 522 (773)
T ss_dssp HHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHcCCcccCCCcChhhhhhccccC
Confidence 4567788999999999988999999999999876
No 59
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=48.08 E-value=26 Score=24.18 Aligned_cols=31 Identities=3% Similarity=0.147 Sum_probs=26.6
Q ss_pred Hhh-CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 89 AWC-EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 89 ~Wa-~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
-|. .|.+..+|.+..++..+.+-|.+++|++
T Consensus 52 l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~ 83 (155)
T 3cdh_A 52 LVDNDAMMITRLAKLSLMEQSRMTRIVDQMDA 83 (155)
T ss_dssp HSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344 4679999999999999999999999876
No 60
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=47.84 E-value=10 Score=26.05 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=25.3
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.|.+.++|.+..++..+.+-|.+.+|++
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 76 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKLEK 76 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 5669999999999999999999998875
No 61
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=47.65 E-value=45 Score=22.81 Aligned_cols=52 Identities=8% Similarity=0.175 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCCChhhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 58 HIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 58 ~i~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.+.....++|+.. ..+.++..+ =..|.+..+|.+..++..+.+-|.+.+|++
T Consensus 26 ~~~~~~~~~~lt~--------~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 77 (151)
T 3kp7_A 26 LLKDLQTEYGISA--------EQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLN 77 (151)
T ss_dssp HHHHHHHHHTCCH--------HHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCH--------HHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344445566542 233455555 247889999999999999999999998876
No 62
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=46.96 E-value=32 Score=23.04 Aligned_cols=30 Identities=10% Similarity=0.089 Sum_probs=26.6
Q ss_pred hhCCCCHHHHHhhc-CCCccHHHHHHHHHHH
Q psy6286 90 WCEGASFLKVCSIT-DIFEGSIIRCMRRLEE 119 (159)
Q Consensus 90 Wa~G~~f~~i~~~t-~l~EG~iVR~~rRl~e 119 (159)
+..+.++.+|.+.. ++..+.+-+.+++|++
T Consensus 32 ~~~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 32 FQGTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp HHSCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 34678999999999 9999999999988876
No 63
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=46.42 E-value=43 Score=22.36 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=26.2
Q ss_pred hCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 91 CEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 91 a~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..+.+..+|.+..++..+.+-|.+++|.+
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999887
No 64
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=46.34 E-value=26 Score=24.36 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 84 MDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 84 ~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..++..+..|.|..+|.+..++...+|-||++|-.+
T Consensus 39 ~~iv~~~~~G~s~~~iA~~lgis~~TV~rw~~~~~~ 74 (149)
T 1k78_A 39 QRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455666679999999999999999999999998654
No 65
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=46.06 E-value=48 Score=23.53 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=37.6
Q ss_pred cCCchHHHHHHH-hhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy6286 78 QFKPSLMDVVHA-WCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQL 124 (159)
Q Consensus 78 ~~~~~l~~~v~~-Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql 124 (159)
.+.+.--.++.. ...|.|..||.+..+++++.+=+.+.|...-|++.
T Consensus 140 ~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 140 SLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 455555556644 57999999999999999999999888888877764
No 66
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=45.77 E-value=27 Score=25.06 Aligned_cols=39 Identities=18% Similarity=0.071 Sum_probs=29.5
Q ss_pred chHHHHHHHhhC--CCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 81 PSLMDVVHAWCE--GASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 81 ~~l~~~v~~Wa~--G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+.++..++.--. |.+..+|.+..++..+.+-|.+++|++
T Consensus 72 ~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 72 WDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp HHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444443222 379999999999999999999999876
No 67
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=45.73 E-value=29 Score=24.23 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCCChhhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 56 ARHIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 56 ~~~i~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
...+.....++|+.. ..+.++..++. ..|.+..+|.+..++..+.+-|.+.+|++
T Consensus 39 ~~~~~~~~~~~glt~--------~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 39 SSELNQALASEKLPT--------PKLRLLSSLSA-YGELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp HHHHHHHHHHHTCCH--------HHHHHHHHHHH-HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCH--------HHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444555667652 23344444443 36789999999999999999999998876
No 68
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=45.35 E-value=27 Score=23.53 Aligned_cols=41 Identities=12% Similarity=0.073 Sum_probs=31.7
Q ss_pred cCCchHHHHHHHhhCCCCHHHHHhhcC----CCccHHHHHHHHHHH
Q psy6286 78 QFKPSLMDVVHAWCEGASFLKVCSITD----IFEGSIIRCMRRLEE 119 (159)
Q Consensus 78 ~~~~~l~~~v~~Wa~G~~f~~i~~~t~----l~EG~iVR~~rRl~e 119 (159)
...+..|.+++. ..|.+-.+|.+... +..+++-|.+.||++
T Consensus 35 ~~e~~VL~~L~~-~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 35 NAELIVMRVIWS-LGEARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp CSCSHHHHHHHH-HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 355677777765 45679999999875 567999999999876
No 69
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=44.54 E-value=37 Score=23.12 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=25.2
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.|.+..+|.+..++..+.+-|.+++|.+
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le~ 80 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQR 80 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999988876
No 70
>2whn_A PILC, pilus assembly protein PILC; transport, transmembrane, pilus biogenesis, protein transpor; 2.05A {Thermus thermophilus}
Probab=44.42 E-value=47 Score=21.99 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=24.0
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCccHHHHHHH
Q psy6286 84 MDVVHAWCEGASFLKVCSITDIFEGSIIRCMR 115 (159)
Q Consensus 84 ~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~r 115 (159)
-.+...=.+|.||++.++.++.++..++..++
T Consensus 53 ~~i~~~l~~G~sls~al~~~~~fp~~~~~~i~ 84 (116)
T 2whn_A 53 KQVRTDVEGGMAFSEALSKHKIFSRLYVNLVR 84 (116)
T ss_dssp HHHHHHHHTTCCHHHHHHTSTTSCHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHCCCCCHHHHHHHH
Confidence 34444446999999999999888877666654
No 71
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=43.67 E-value=19 Score=24.50 Aligned_cols=34 Identities=6% Similarity=-0.117 Sum_probs=29.0
Q ss_pred HHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHH
Q psy6286 84 MDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRL 117 (159)
Q Consensus 84 ~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl 117 (159)
..++..+..|.|..+|.+..++...++-||++|-
T Consensus 13 ~~i~~~~~~G~s~~~ia~~lgis~~Tv~r~~~~~ 46 (141)
T 1u78_A 13 AQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKDP 46 (141)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSG
T ss_pred HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHcc
Confidence 3556667899999999999999999999999874
No 72
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=43.29 E-value=61 Score=23.62 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=38.2
Q ss_pred ccCCchHHHHHHH-hhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy6286 77 NQFKPSLMDVVHA-WCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQL 124 (159)
Q Consensus 77 ~~~~~~l~~~v~~-Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql 124 (159)
..+.+.--.++.. +..|.|+.+|.+..+++++.+=+.+.|...-|++.
T Consensus 186 ~~L~~~~r~vl~l~~~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 186 SKLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TTSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHhcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 3455555555554 47999999999999999999988888888888764
No 73
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=42.77 E-value=38 Score=22.45 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=25.9
Q ss_pred hhCCCCHHHHHhhc-CCCccHHHHHHHHHHH
Q psy6286 90 WCEGASFLKVCSIT-DIFEGSIIRCMRRLEE 119 (159)
Q Consensus 90 Wa~G~~f~~i~~~t-~l~EG~iVR~~rRl~e 119 (159)
+..+.+|.+|.+.. ++..+.+-+.+++|++
T Consensus 24 ~~~~~~~~eLa~~l~~is~~tls~~L~~Le~ 54 (107)
T 2hzt_A 24 THGKKRTSELKRLMPNITQKMLTQQLRELEA 54 (107)
T ss_dssp TTCCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 44557999999998 9999999999988875
No 74
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=42.71 E-value=16 Score=21.04 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=25.8
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCccHHHHHHHH
Q psy6286 85 DVVHAWCEGASFLKVCSITDIFEGSIIRCMRR 116 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rR 116 (159)
.+...+.+|.|..+|.+..++...++=|++++
T Consensus 23 ~i~~l~~~g~s~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 23 VAHELAKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHh
Confidence 33344679999999999999999998887653
No 75
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.70 E-value=40 Score=21.54 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=35.8
Q ss_pred ccCCchHHHHHHHh-h----CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy6286 77 NQFKPSLMDVVHAW-C----EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQ 123 (159)
Q Consensus 77 ~~~~~~l~~~v~~W-a----~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrq 123 (159)
..+.+.--.++..- . .|.|+.+|-+..+++++.+=+.+.|...-|++
T Consensus 17 ~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred HhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45555555555543 3 89999999999999999988888887766654
No 76
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=42.61 E-value=26 Score=24.12 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=25.3
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.+.+..+|.+..++..+.+-|.+++|++
T Consensus 60 ~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 60 DERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 5569999999999999999999999876
No 77
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=42.49 E-value=23 Score=21.06 Aligned_cols=35 Identities=6% Similarity=0.055 Sum_probs=29.9
Q ss_pred hhCCCC----HHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy6286 90 WCEGAS----FLKVCSITDIFEGSIIRCMRRLEEVLRQL 124 (159)
Q Consensus 90 Wa~G~~----f~~i~~~t~l~EG~iVR~~rRl~elLrql 124 (159)
-..|.| ..+++..-++..+.+=+|+++..++-..+
T Consensus 18 ~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~~~~~~~ 56 (59)
T 2glo_A 18 YRNDNDCKGNQRATARKYNIHRRQIQKWLQCESNLRSSV 56 (59)
T ss_dssp HHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHHHHHHHH
T ss_pred HHcCCCcchHHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 357889 99999999999999999999877766655
No 78
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=41.93 E-value=51 Score=23.30 Aligned_cols=37 Identities=14% Similarity=0.219 Sum_probs=32.0
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhh
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQAS 128 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~ 128 (159)
.|.|+.+|++.+++..|+|-+.+.-=++|+..+..-.
T Consensus 36 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~ 72 (218)
T 3gzi_A 36 AQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHET 72 (218)
T ss_dssp SCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence 5679999999999999999999988888888876643
No 79
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=41.64 E-value=27 Score=22.52 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=25.5
Q ss_pred CCCHHHHHhhcCCCccH-HHHHHHHHHHH
Q psy6286 93 GASFLKVCSITDIFEGS-IIRCMRRLEEV 120 (159)
Q Consensus 93 G~~f~~i~~~t~l~EG~-iVR~~rRl~el 120 (159)
|.++.+|.+..++..+. +-|.+++|++-
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~ 58 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRA 58 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHT
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHC
Confidence 58999999999999999 99999998764
No 80
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=40.99 E-value=35 Score=23.06 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.5
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEV 120 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~el 120 (159)
.+.+..+|.+..++..+.+-|.+++|.+-
T Consensus 50 ~~~~~~ela~~l~~~~~tvs~~l~~L~~~ 78 (142)
T 2bv6_A 50 SPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp SEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHC
Confidence 45699999999999999999999888763
No 81
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=40.94 E-value=44 Score=22.99 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=25.8
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.|.+..+|.+..++..+.+-|.+++|++
T Consensus 61 ~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 61 DGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp TCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 5779999999999999999999999876
No 82
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=40.68 E-value=26 Score=24.35 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=25.2
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.|.+..+|.+..++..+.+-|.+++|++
T Consensus 65 ~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 65 DGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 4569999999999999999999999876
No 83
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=40.68 E-value=38 Score=23.13 Aligned_cols=37 Identities=8% Similarity=0.143 Sum_probs=29.1
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++. ..|.+..+|.+..++..+.+-|.+++|++
T Consensus 41 ~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 41 FVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp HHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444433 35679999999999999999999999876
No 84
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=40.61 E-value=52 Score=22.76 Aligned_cols=49 Identities=10% Similarity=0.030 Sum_probs=37.8
Q ss_pred CCchHHHHHHHhhCCCCHHHHHhhc-CCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 79 FKPSLMDVVHAWCEGASFLKVCSIT-DIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 79 ~~~~l~~~v~~Wa~G~~f~~i~~~t-~l~EG~iVR~~rRl~elLrql~~a 127 (159)
-+-..-.++..|+.|.|..+|++.. ++...|+.-++.=-.+...+|...
T Consensus 50 TRI~V~~Il~~l~~G~s~eeIl~~yP~Lt~edI~aAL~Ya~~~~~eId~~ 99 (106)
T 2ga1_A 50 TRIPVWTLVAYRQQGAPDKELLANYPGLTAEDLSAAWHYYEQNPEQIDRE 99 (106)
T ss_dssp SCCBHHHHHHHHHTTCCHHHHHHHSTTCCHHHHHHHHHHHHHSHHHHHHH
T ss_pred ceeeHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888889999999999998 899999888776666655555443
No 85
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=40.59 E-value=30 Score=23.53 Aligned_cols=28 Identities=4% Similarity=0.142 Sum_probs=25.5
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.|.+..+|.+..++..+++-|.+.+|++
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 79 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQ 79 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999876
No 86
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=39.92 E-value=39 Score=22.86 Aligned_cols=38 Identities=8% Similarity=0.169 Sum_probs=29.9
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++....|.+..+|.+..++..+.+-|.+++|++
T Consensus 39 ~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 39 VVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp HHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 34444443245779999999999999999999999886
No 87
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=39.69 E-value=33 Score=24.28 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=37.3
Q ss_pred cCCchHHHHHHH-hhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy6286 78 QFKPSLMDVVHA-WCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQL 124 (159)
Q Consensus 78 ~~~~~l~~~v~~-Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql 124 (159)
.+.+.--.++.. ...|.|..||.+..+++++.+=+.+.|...-|++.
T Consensus 135 ~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp TSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 444454455544 57999999999999999999999888888877763
No 88
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=38.89 E-value=52 Score=23.08 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=27.9
Q ss_pred HHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 83 LMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 83 l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+...++.--.|.+-++|.+...+..+++-|.+.+|++
T Consensus 36 vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 36 TLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp HHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 3333333335567789999999999999999999875
No 89
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=38.63 E-value=14 Score=28.61 Aligned_cols=45 Identities=27% Similarity=0.220 Sum_probs=38.8
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhhh
Q psy6286 85 DVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASR 129 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~~ 129 (159)
.+|.+++.|.++.+++....+.+..+.+.++++.+-|..+....-
T Consensus 93 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i 137 (297)
T 3fxz_A 93 WVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQV 137 (297)
T ss_dssp EEEEECCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred EEEEECCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence 467789999999999999999999999999999888888876643
No 90
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=38.41 E-value=25 Score=22.72 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=24.5
Q ss_pred CCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 94 ASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 94 ~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.+..+|.+..++..+++-|.+.+|++
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~ 56 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEE 56 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 79999999999999999999999876
No 91
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=38.05 E-value=41 Score=25.06 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=29.2
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++. ..|.+..+|.+...+..+.+-|.+.||++
T Consensus 52 ~iL~~L~~-~~~~t~~eLa~~l~i~~stvs~~l~~Le~ 88 (207)
T 2fxa_A 52 HILWIAYQ-LNGASISEIAKFGVMHVSTAFNFSKKLEE 88 (207)
T ss_dssp HHHHHHHH-HTSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-CCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33443332 36789999999999999999999999876
No 92
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=36.65 E-value=45 Score=23.04 Aligned_cols=35 Identities=6% Similarity=0.254 Sum_probs=28.7
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.+.|..+|++.+++..|+|-+.+.--++|+..+..
T Consensus 21 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 55 (194)
T 3bqz_B 21 NATTTGEIVKLSESSKGNLYYHFKTKENLFLEILN 55 (194)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHH
Confidence 56799999999999999998888777777766544
No 93
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=36.33 E-value=39 Score=23.28 Aligned_cols=35 Identities=17% Similarity=0.283 Sum_probs=29.0
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.+.|..+|++.+++..|+|-+.+.--++|+..+..
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (194)
T 2g7s_A 27 NSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVS 61 (194)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHH
Confidence 56799999999999999999888777777766544
No 94
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=35.74 E-value=58 Score=22.29 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=29.7
Q ss_pred hCCCCHHHHHhhcCCCccHHHHHHHH-HHHHHHHHHH
Q psy6286 91 CEGASFLKVCSITDIFEGSIIRCMRR-LEEVLRQLVQ 126 (159)
Q Consensus 91 a~G~~f~~i~~~t~l~EG~iVR~~rR-l~elLrql~~ 126 (159)
..+.|..+|++.+++..|.|-+.+.- -++|+..+..
T Consensus 24 ~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~~ 60 (191)
T 1sgm_A 24 YHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVT 60 (191)
T ss_dssp TTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHCCCchhHHHHccccHHHHHHHHHH
Confidence 36789999999999999999999985 7777766543
No 95
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=35.41 E-value=64 Score=22.52 Aligned_cols=36 Identities=8% Similarity=0.087 Sum_probs=30.6
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.|.|..+|++.+++..|+|-+.+.--++|+..+..-
T Consensus 35 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 70 (213)
T 2qtq_A 35 VDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDR 70 (213)
T ss_dssp SCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHH
T ss_pred ccccHHHHHHHhCCChhhHhHhcCCHHHHHHHHHHH
Confidence 578999999999999999999988888888776543
No 96
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=34.93 E-value=36 Score=22.80 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=27.1
Q ss_pred HHhh-CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 88 HAWC-EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 88 ~~Wa-~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+-|. .|.+..+|.+..++..+.+-|.+++|++
T Consensus 44 ~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 44 ILRQQGEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp HHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 3344 5679999999999999999999999876
No 97
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=34.85 E-value=83 Score=22.09 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=27.5
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLV 125 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~ 125 (159)
.|.|..+|++.+++..|+|-+.+.-=++|+..+.
T Consensus 31 ~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av~ 64 (197)
T 2hyt_A 31 ADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVV 64 (197)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 5679999999999999999888776666665554
No 98
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=34.41 E-value=35 Score=21.95 Aligned_cols=28 Identities=11% Similarity=0.091 Sum_probs=25.2
Q ss_pred CCCCHHHH----HhhcCCCccHHHHHHHHHHH
Q psy6286 92 EGASFLKV----CSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 92 ~G~~f~~i----~~~t~l~EG~iVR~~rRl~e 119 (159)
.|.+..+| .+..++..+.+-|.+++|++
T Consensus 21 ~~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 21 EGIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp TTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 56799999 88889999999999999987
No 99
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=34.10 E-value=46 Score=22.47 Aligned_cols=35 Identities=6% Similarity=0.085 Sum_probs=29.9
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 85 DVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
-+.+-|..|.+..+|.+..++..+.+-|.+.+|.+
T Consensus 43 iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~~ 77 (146)
T 3tgn_A 43 ILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVK 77 (146)
T ss_dssp HHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34555778899999999999999999999988874
No 100
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=34.00 E-value=70 Score=22.44 Aligned_cols=37 Identities=8% Similarity=0.119 Sum_probs=29.1
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++. ..|.+..+|.+..++..+++-|.+++|++
T Consensus 49 ~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 85 (168)
T 2nyx_A 49 RTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVG 85 (168)
T ss_dssp HHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34444433 35779999999999999999999999875
No 101
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=33.76 E-value=20 Score=27.79 Aligned_cols=46 Identities=11% Similarity=0.014 Sum_probs=39.8
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhhhh
Q psy6286 85 DVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRN 130 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~~~ 130 (159)
.++.+|+.|.++.+.+....+.+..+.+++.++.+.|..+....-+
T Consensus 111 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~iv 156 (318)
T 3lxp_A 111 QLVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYI 156 (318)
T ss_dssp EEEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4677899999999999999999999999999999999888876533
No 102
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=33.15 E-value=68 Score=22.15 Aligned_cols=26 Identities=12% Similarity=0.172 Sum_probs=24.0
Q ss_pred CCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 94 ASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 94 ~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
-|.++|.+.+++.++++.|.+++|++
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 68899999999999999999999876
No 103
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=33.09 E-value=11 Score=29.01 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=40.0
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhhhhhC
Q psy6286 85 DVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIG 132 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~~~ig 132 (159)
.++.+|+.|.++.+++....+.+..+.+.++++.+.|..+....-+.|
T Consensus 96 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~ 143 (303)
T 3a7i_A 96 WIIMEYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHR 143 (303)
T ss_dssp EEEEECCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECC
T ss_pred EEEEEeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCccC
Confidence 456778999999999998889999999999999999988887654333
No 104
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=32.96 E-value=23 Score=24.38 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=28.6
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|+|-+.+.--++|+.++..
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (188)
T 3qkx_A 27 NQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAH 61 (188)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHHH
Confidence 45799999999999999999888777777766543
No 105
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=32.59 E-value=50 Score=23.04 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=37.9
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhhhhhCChHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKFNEAI 144 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a~ 144 (159)
.|.|..+|++.+++..|+|-+.+.--++|+..+..-.- ..+...+..+.
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~----~~~~~~~~~~~ 79 (202)
T 3lwj_A 31 YNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFA----KQIISSISEYY 79 (202)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCchhHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 56899999999999999999999999999988766542 34444444443
No 106
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=31.79 E-value=53 Score=22.68 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=33.2
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 85 DVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.++.+- .|.|..+|++..++..|+|-+.+.-=++|+..+...
T Consensus 25 ~lf~~~-~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 66 (190)
T 2v57_A 25 LVLADH-PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARH 66 (190)
T ss_dssp HHHTTC-TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHc-CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 444444 899999999999999999999888777777665543
No 107
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=31.79 E-value=24 Score=22.46 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=25.9
Q ss_pred hCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 91 CEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 91 a~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..+.++.+|.+..++..+.+-|.+++|++
T Consensus 28 ~~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35689999999999999999999988876
No 108
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=31.27 E-value=59 Score=21.54 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=29.7
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.+...+.. .+.++.++.+..++..+.+-|.+++|++
T Consensus 36 ~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 36 MILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp HHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33444443 5789999999999999999999999988
No 109
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=31.18 E-value=1.1e+02 Score=21.28 Aligned_cols=26 Identities=4% Similarity=0.148 Sum_probs=23.6
Q ss_pred CCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 94 ASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 94 ~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.+.++|.+...+..+++.|.+.+|++
T Consensus 53 ~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 53 LTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp -CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 58999999999999999999999975
No 110
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=31.16 E-value=30 Score=23.46 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=26.1
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEV 120 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~el 120 (159)
.|.+..+|.+..++..+.+-|.+++|.+-
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~~ 81 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHHC
Confidence 56799999999999999999999998874
No 111
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=31.11 E-value=46 Score=22.88 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=29.0
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|.|-+.+.--++|+..+..
T Consensus 29 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 63 (191)
T 3on4_A 29 NAFSFKDIATAINIKTASIHYHFPSKEDLGVAVIS 63 (191)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHH
Confidence 67899999999999999999888777777766544
No 112
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=30.68 E-value=69 Score=20.80 Aligned_cols=43 Identities=9% Similarity=0.074 Sum_probs=35.4
Q ss_pred cCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHH
Q psy6286 78 QFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEV 120 (159)
Q Consensus 78 ~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~el 120 (159)
.+.+.=..|+...++|.|-.+|-+..++.++++=..++|+-.-
T Consensus 29 ~Lt~rE~~Vl~l~~~G~s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 29 VLTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5666667888889999999999999999999887777665433
No 113
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=30.63 E-value=23 Score=27.70 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=38.8
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhhhh
Q psy6286 85 DVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRN 130 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~~~ 130 (159)
.++++|+.|.++.+++....+.+..+.+.++++.+-|..+....-+
T Consensus 118 ~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~iv 163 (321)
T 2c30_A 118 WVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVI 163 (321)
T ss_dssp EEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCee
Confidence 4677899999999999998999999999999988888888765433
No 114
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=30.49 E-value=86 Score=24.38 Aligned_cols=103 Identities=12% Similarity=0.046 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhhhCCccC----CC------ccchhhHHHhhh-cCCC----------ceeeeccCcH---------HHHH
Q psy6286 7 EELKCRKRVLRRLGYATE----AD------VIEMKGRVACEL-SKSE----------ETVILTINDK---------LELA 56 (159)
Q Consensus 7 ~e~~~~~~vL~~lgyid~----~~------~vt~kGrva~~I-~s~~----------eLlltEf~p~---------~~i~ 56 (159)
+....+++=|++.|||.. ++ .+|.+|+-..+- .... ++-...|-|. ..+.
T Consensus 65 ~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~~~~~~eq~s~E~~~~~~~~~~~~~~l~~~~~~~~ 144 (250)
T 1p4x_A 65 SDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVTLFDQIIKQFNLADQSESQMIPKDSKEFLNLMMYTM 144 (250)
T ss_dssp GGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSCCSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHH
Confidence 345678889999999932 22 589999874321 1100 1111112232 1122
Q ss_pred HHHHHHHHHcCCCCChhhhhccCCchHHHHHHHhhCC---CCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 57 RHIARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEG---ASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 57 ~~i~~~~~~~~l~~~~~~~~~~~~~~l~~~v~~Wa~G---~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.....+...+|+... .+.-..+-|.+| .+..+|.+...+..+++.|.+.||++
T Consensus 145 ~~~~~~~~~~gLt~~----------q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~ 200 (250)
T 1p4x_A 145 YFKNIIKKHLTLSFV----------EFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKK 200 (250)
T ss_dssp HHHHHHHHHCSSCHH----------HHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCHH----------HHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 223334445665421 222334445543 79999999999999999999999876
No 115
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=30.48 E-value=39 Score=21.37 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=25.1
Q ss_pred hhC-CCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 90 WCE-GASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 90 Wa~-G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
|.. +.+..+|.+..++..+.+-|.+++|.+
T Consensus 34 ~~~~~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp TTCCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HhCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344 579999999999999999998887764
No 116
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=30.23 E-value=57 Score=22.99 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=29.3
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|+|-+.+.-=++|+..+..
T Consensus 30 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 64 (216)
T 3f0c_A 30 CKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIK 64 (216)
T ss_dssp SSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred CcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 56799999999999999999988777777766544
No 117
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=30.11 E-value=32 Score=28.58 Aligned_cols=37 Identities=8% Similarity=0.148 Sum_probs=30.9
Q ss_pred HHHHHHHhhC---CCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 83 LMDVVHAWCE---GASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 83 l~~~v~~Wa~---G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+.-+.+.|-+ |.+..+|.+...+..+++-|.+.||++
T Consensus 407 ~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~ 446 (487)
T 1hsj_A 407 IYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKD 446 (487)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445566765 579999999999999999999999975
No 118
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=30.08 E-value=77 Score=22.33 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=26.3
Q ss_pred HHHhhCCCCHHHHHhhc-CCCccHHHHHHHHHHH
Q psy6286 87 VHAWCEGASFLKVCSIT-DIFEGSIIRCMRRLEE 119 (159)
Q Consensus 87 v~~Wa~G~~f~~i~~~t-~l~EG~iVR~~rRl~e 119 (159)
...+..+.+|+++.+.. ++..+.+-+.+++|++
T Consensus 33 ~~L~~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~ 66 (131)
T 4a5n_A 33 YHMIDGKKRFNEFRRICPSITQRMLTLQLRELEA 66 (131)
T ss_dssp HHHTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCcCHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 33344556999999999 9999999988888765
No 119
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=29.94 E-value=79 Score=22.25 Aligned_cols=30 Identities=13% Similarity=0.084 Sum_probs=26.2
Q ss_pred hhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 90 WCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 90 Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+..+.+|.++.+..++..+.+-+.+++|++
T Consensus 34 ~~g~~~~~eLa~~lgis~~tls~~L~~Le~ 63 (146)
T 2f2e_A 34 FEGLTRFGEFQKSLGLAKNILAARLRNLVE 63 (146)
T ss_dssp HTTCCSHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 445589999999999999999999988876
No 120
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=29.91 E-value=30 Score=24.08 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=31.2
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.|.|..+|++.+++..|+|-+.+.--++|+..+..-
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 62 (206)
T 3dew_A 27 YGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQE 62 (206)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 467999999999999999999999999988886553
No 121
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=29.60 E-value=30 Score=24.17 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=29.1
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|+|-+.+.=-++|+..+..
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 67 (203)
T 3f1b_A 33 HETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQ 67 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHH
T ss_pred ccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHH
Confidence 56799999999999999999988777777766543
No 122
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=29.30 E-value=27 Score=24.71 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=26.0
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHH
Q psy6286 85 DVVHAWCEGASFLKVCSITDIFEGSIIRCMRRL 117 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl 117 (159)
.++..+..|.|..+|.+..++...+|-||++|-
T Consensus 33 ~ii~l~~~G~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 33 RIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp HHHHHHHHTCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 455556788899999888888888888888763
No 123
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=29.25 E-value=64 Score=21.23 Aligned_cols=30 Identities=13% Similarity=-0.042 Sum_probs=25.5
Q ss_pred hhCCCCHHHHHhhcC-CCccHHHHHHHHHHH
Q psy6286 90 WCEGASFLKVCSITD-IFEGSIIRCMRRLEE 119 (159)
Q Consensus 90 Wa~G~~f~~i~~~t~-l~EG~iVR~~rRl~e 119 (159)
+..+.+|.+|.+..+ +..+.+-+.+++|++
T Consensus 35 ~~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 35 NRRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp TTSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HhCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 445579999999995 999999999888876
No 124
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=28.99 E-value=49 Score=22.50 Aligned_cols=28 Identities=14% Similarity=0.139 Sum_probs=25.4
Q ss_pred hhCCCCHHHHHhhcCCCccHHHHHHHHH
Q psy6286 90 WCEGASFLKVCSITDIFEGSIIRCMRRL 117 (159)
Q Consensus 90 Wa~G~~f~~i~~~t~l~EG~iVR~~rRl 117 (159)
.....|..++.+.+++.+-+++|-++++
T Consensus 32 ~~~~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 32 KVVNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 4567899999999999999999999887
No 125
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=28.67 E-value=66 Score=22.47 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=28.1
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|+|-+.+.=-++|+..+..
T Consensus 28 ~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 62 (193)
T 2dg8_A 28 ARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFG 62 (193)
T ss_dssp GGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHH
T ss_pred hhccHHHHHHHhCCCchhhheeCCCHHHHHHHHHH
Confidence 56799999999999999998887777777766543
No 126
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=28.49 E-value=86 Score=21.21 Aligned_cols=65 Identities=11% Similarity=0.028 Sum_probs=47.9
Q ss_pred HHHHHHHhhC------CCCHHHHHhhc----CCCccHHHHHHHHHHHHHHHHHHhhhhhCChHHHHHHHHHHHhh--cCC
Q psy6286 83 LMDVVHAWCE------GASFLKVCSIT----DIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKFNEAIKTV--KRD 150 (159)
Q Consensus 83 l~~~v~~Wa~------G~~f~~i~~~t----~l~EG~iVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a~~~I--~Rd 150 (159)
+...+..|+. |.++...=..- ++.+-.+=+|+.=+.+.|+++ .+ ++++.+.+.++...+ |.+
T Consensus 47 l~~fl~~~~ggp~~y~g~~m~~~H~~l~~~~~I~~~~f~~wl~~l~~al~e~-~~-----~~~~~~~~~~~~~~~~~r~~ 120 (124)
T 1s69_A 47 QKAFLTYAFGGTDKYDGRYMREAHKELVENHGLNGEHFDAVAEDLLATLKEM-GV-----PEDLIAEVAAVAGAPAHKRD 120 (124)
T ss_dssp HHHHHHHHTTSSSCCSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH-TC-----CHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCccHHHHHhCcccCCCcCHHHHHHHHHHHHHHHHHc-CC-----CHHHHHHHHHHHHhhccchh
Confidence 4455555553 44555432333 899999999999999999888 32 589999999999999 999
Q ss_pred ccc
Q psy6286 151 IFL 153 (159)
Q Consensus 151 IV~ 153 (159)
||.
T Consensus 121 iv~ 123 (124)
T 1s69_A 121 VLN 123 (124)
T ss_dssp HTT
T ss_pred hhc
Confidence 874
No 127
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=27.75 E-value=45 Score=23.10 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=26.7
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLV 125 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~ 125 (159)
.|.|..+|++.+++..|+|-+.+.--++|+..+.
T Consensus 26 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~ 59 (199)
T 3qbm_A 26 AGTAISDIMAATGLEKGGIYRHFESKEQLALAAF 59 (199)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHH
T ss_pred CcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHH
Confidence 5679999999999999998887766666655544
No 128
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=27.41 E-value=38 Score=23.07 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=25.0
Q ss_pred hhCCCCHHHHHhhcCCCccHHHHHHHHH
Q psy6286 90 WCEGASFLKVCSITDIFEGSIIRCMRRL 117 (159)
Q Consensus 90 Wa~G~~f~~i~~~t~l~EG~iVR~~rRl 117 (159)
.....|..++-+.+++.+-+|+|.++++
T Consensus 36 ~~~~~si~elA~~~~vS~aTv~Rf~kkl 63 (111)
T 2o3f_A 36 XAIESTVNEISALANSSDAAVIRLCXSL 63 (111)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHCCCHHHHHHHHHHc
Confidence 3457899999999999999999999886
No 129
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=27.39 E-value=1.5e+02 Score=20.33 Aligned_cols=36 Identities=3% Similarity=0.009 Sum_probs=29.7
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRL 117 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl 117 (159)
.-......|.+|.|+.+|-..-++..++|..-+-++
T Consensus 21 t~~~t~~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~ 56 (122)
T 3iuo_A 21 MKVSIVQQIDRKVALDDIAVSHGLDFPELLSEVETI 56 (122)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 445667778999999999999999999888766555
No 130
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=27.32 E-value=77 Score=20.90 Aligned_cols=38 Identities=13% Similarity=-0.026 Sum_probs=30.7
Q ss_pred hHHHHHHHhh---CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWC---EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa---~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++-.-+-|. .|.+-.+|.+.+++.-+.+-|+++||++
T Consensus 22 q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~ 62 (91)
T 2dk5_A 22 EKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES 62 (91)
T ss_dssp HHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4444445564 3799999999999999999999999975
No 131
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=27.25 E-value=76 Score=23.01 Aligned_cols=36 Identities=22% Similarity=0.213 Sum_probs=29.5
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.+.|..+|++.+++..|.|-+.+.--++|+..+...
T Consensus 62 ~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~~ 97 (229)
T 3bni_A 62 DALSTRAVALRADVPIGSVYRFFGNKRQMADALAQR 97 (229)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred hhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHHHH
Confidence 568999999999999999998887777777665543
No 132
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=27.11 E-value=1.5e+02 Score=21.78 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=44.5
Q ss_pred HHHHHhh-----CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhhhhhCChHHHHHHHHHHHhhcCCcccccc
Q psy6286 85 DVVHAWC-----EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKFNEAIKTVKRDIFLEIL 156 (159)
Q Consensus 85 ~~v~~Wa-----~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a~~~I~RdIV~~~s 156 (159)
.|+.+|- .|. ..+-.+|++-.-+.|+.+++..+-+.+---.+++-++|+.+..+.=.|+-+|-+.
T Consensus 67 SIvR~~~~~~~k~g~-------~~~a~~gt~a~~v~~~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~k~~~Fp~e 136 (157)
T 3clj_A 67 SIGRAYLDETRSNSN-------SSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWDRSGLFQKS 136 (157)
T ss_dssp HHHHHHHHHHHTCCC-----------STTSHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHhcCC-------ccCCCCccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccCCCCCHH
Confidence 5667775 355 2355678887667777888777655422224788999999999998888888764
No 133
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=27.07 E-value=57 Score=19.90 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhCChHH
Q psy6286 109 SIIRCMRRLEEVLRQLVQASRNIGNTLL 136 (159)
Q Consensus 109 ~iVR~~rRl~elLrql~~a~~~ig~~~L 136 (159)
.+.|-+.|.+|||..+...+.+ +.+.|
T Consensus 4 ~L~RDv~RaiELle~lq~sgev-p~~KL 30 (53)
T 1zl8_A 4 NLERDVQRILELMEHVQKTGEV-NNAKL 30 (53)
T ss_dssp HHHHHHHHHHHHHHHHGGGSSS-THHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCC-CcHHH
Confidence 4678899999999999777543 44444
No 134
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=27.05 E-value=76 Score=22.22 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=28.3
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.+.|..+|++.+++..|+|-+.+.=-++|+..+..
T Consensus 50 ~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~ 84 (218)
T 3dcf_A 50 YATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVN 84 (218)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 45789999999999999999888777777766544
No 135
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=26.75 E-value=37 Score=24.21 Aligned_cols=35 Identities=6% Similarity=0.136 Sum_probs=30.5
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|+|-+.+.--++|+..+..
T Consensus 34 ~~~s~~~IA~~agvs~~t~Y~~F~sKe~L~~~~~~ 68 (221)
T 3c2b_A 34 KALTTSGLARAANCSKESLYKWFGDRDGLLAAMIT 68 (221)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHhCCCHHHHHHHHHH
Confidence 56799999999999999999999988888888765
No 136
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=26.73 E-value=22 Score=26.47 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=37.8
Q ss_pred HHHHHHhhCCCCHHHHHhh-----cCCCccHHHHHHHHHHHHHHHHHHhhhh
Q psy6286 84 MDVVHAWCEGASFLKVCSI-----TDIFEGSIIRCMRRLEEVLRQLVQASRN 130 (159)
Q Consensus 84 ~~~v~~Wa~G~~f~~i~~~-----t~l~EG~iVR~~rRl~elLrql~~a~~~ 130 (159)
..++.+++.|.++.+.+.. ..+.+..+.++++++.+-|..+....-+
T Consensus 86 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~iv 137 (289)
T 1x8b_A 86 MLIQNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLV 137 (289)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEEEEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEe
Confidence 3467788999999999976 4588999999999999888888766433
No 137
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=26.66 E-value=72 Score=22.55 Aligned_cols=35 Identities=11% Similarity=0.179 Sum_probs=28.8
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|.|-+.+.--++|+..+..
T Consensus 49 ~~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~~ 83 (222)
T 3bru_A 49 SSVGVDEILKAARVPKGSFYHYFRNKADFGLALIE 83 (222)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred CcCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHHH
Confidence 56799999999999999999988777777665543
No 138
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=26.55 E-value=34 Score=21.37 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=27.3
Q ss_pred CchHHHHHHHhhCCCCHHHHHhhcC----CCccHHHHHHHHHHH
Q psy6286 80 KPSLMDVVHAWCEGASFLKVCSITD----IFEGSIIRCMRRLEE 119 (159)
Q Consensus 80 ~~~l~~~v~~Wa~G~~f~~i~~~t~----l~EG~iVR~~rRl~e 119 (159)
.+..+.+++. ..+.+..+|.+..+ +..+++-|.+.||.+
T Consensus 11 e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 11 ELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp HHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 3445555543 34468999988764 678999999888875
No 139
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.33 E-value=1.1e+02 Score=21.58 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=28.9
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLV 125 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~ 125 (159)
.|.|+.+|++.+++..|.|-+.+.-=++|+..+.
T Consensus 38 ~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~ 71 (215)
T 2hku_A 38 EGVPITQICAAAGAHPNQVTYYYGSKERLFVEVA 71 (215)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHH
T ss_pred CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 5689999999999999999998887777776654
No 140
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=26.29 E-value=1.1e+02 Score=21.58 Aligned_cols=34 Identities=12% Similarity=0.295 Sum_probs=26.9
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLV 125 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~ 125 (159)
.|.|..+|++.+++..|+|-+.+.-=++|+..+.
T Consensus 31 ~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~~~ 64 (211)
T 3bhq_A 31 DGTSMEEIATKAGASKQTVYKHFTDKETLFGEVV 64 (211)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 5789999999999999999887766666655543
No 141
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=26.29 E-value=62 Score=20.47 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=25.4
Q ss_pred hCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 91 CEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 91 a~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..+.+..+|.+..++....+-|.+++|.+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46779999999999999999998888864
No 142
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=26.18 E-value=67 Score=23.41 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=29.4
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.+.|..+|++.+++..|.|-+.+.--++|+..+..-
T Consensus 63 ~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~ 98 (236)
T 3q0w_A 63 ADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDR 98 (236)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHCCCHHHHHHHHHHH
Confidence 456999999999999999998888777777776544
No 143
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=26.16 E-value=35 Score=24.01 Aligned_cols=35 Identities=9% Similarity=0.305 Sum_probs=28.2
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|+|-+.+.--++|+..+..
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~ 67 (220)
T 3lhq_A 33 SATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWE 67 (220)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCceeehhhcCCHHHHHHHHHH
Confidence 56789999999999999998887777777666543
No 144
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=26.09 E-value=1e+02 Score=21.74 Aligned_cols=27 Identities=7% Similarity=-0.143 Sum_probs=24.0
Q ss_pred CCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 93 GASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 93 G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+-|..+|.+..++.++++.|++.+|.+
T Consensus 51 ~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 51 FPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp SCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 358899999999999999999998876
No 145
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=25.84 E-value=73 Score=22.27 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=29.4
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|+|-+.+.--++|+..+..
T Consensus 33 ~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~ 67 (212)
T 3knw_A 33 VGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLK 67 (212)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHH
Confidence 56899999999999999999988877777766554
No 146
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=25.63 E-value=61 Score=22.53 Aligned_cols=30 Identities=13% Similarity=0.154 Sum_probs=25.6
Q ss_pred hhCCCCHHHHHhhc-CCCccHHHHHHHHHHH
Q psy6286 90 WCEGASFLKVCSIT-DIFEGSIIRCMRRLEE 119 (159)
Q Consensus 90 Wa~G~~f~~i~~~t-~l~EG~iVR~~rRl~e 119 (159)
+..+.+|.+|.+.. ++..+.+-+.+++|++
T Consensus 45 ~~g~~~~~eLa~~l~gis~~tls~~L~~Le~ 75 (131)
T 1yyv_A 45 RDGTHRFSDLRRXMGGVSEXMLAQSLQALEQ 75 (131)
T ss_dssp GGCCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 44457999999999 6999999999988876
No 147
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.62 E-value=77 Score=24.25 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=38.8
Q ss_pred ccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHH
Q psy6286 77 NQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQ 123 (159)
Q Consensus 77 ~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrq 123 (159)
..+.+.--+++.....|.|..||-+..++++|++=..+.|.-.-|+.
T Consensus 196 ~~L~~~erevl~L~~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 46777777888777899999999999999999998877777665543
No 148
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=25.62 E-value=46 Score=26.01 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=31.6
Q ss_pred hHHHHHHHhhC---CCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCE---GASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~---G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.+.-..+-|-+ |.+..+|.+...+..|++.|.+.||++
T Consensus 36 q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~ 76 (250)
T 1p4x_A 36 EFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVK 76 (250)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 34455667763 679999999999999999999999975
No 149
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=25.55 E-value=41 Score=23.67 Aligned_cols=35 Identities=6% Similarity=0.252 Sum_probs=29.5
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.+.|..+|++.+++..|+|-+.+.--++|+.++..
T Consensus 37 ~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 71 (212)
T 1pb6_A 37 HGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLR 71 (212)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHH
T ss_pred chhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHHH
Confidence 66799999999999999999988877777777654
No 150
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=25.44 E-value=43 Score=23.37 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=28.8
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|.|-+.+.--++|+..+..
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~av~~ 60 (192)
T 2zcm_A 26 DGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVE 60 (192)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHH
Confidence 56799999999999999999888777777776544
No 151
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=25.16 E-value=59 Score=22.76 Aligned_cols=45 Identities=9% Similarity=0.196 Sum_probs=32.3
Q ss_pred hHHHHHHH--hh----CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 82 SLMDVVHA--WC----EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 82 ~l~~~v~~--Wa----~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.+.+++.+ ++ .|.|..+|++.+++..|+|-+.+.--+||+..+..
T Consensus 28 ~Il~aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 78 (212)
T 3nxc_A 28 EILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIE 78 (212)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHH
Confidence 45555444 24 35799999999999999998887777777766544
No 152
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=24.98 E-value=45 Score=22.22 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=28.0
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcC----CCccHHHHHHHHHHH
Q psy6286 81 PSLMDVVHAWCEGASFLKVCSITD----IFEGSIIRCMRRLEE 119 (159)
Q Consensus 81 ~~l~~~v~~Wa~G~~f~~i~~~t~----l~EG~iVR~~rRl~e 119 (159)
+..+.+++. ..|.+-.+|.+... +..+++-+.+.||++
T Consensus 13 ~~vL~~L~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~ 54 (126)
T 1sd4_A 13 WDVMNIIWD-KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYK 54 (126)
T ss_dssp HHHHHHHHH-SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 344555443 34579999998875 589999999999875
No 153
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=24.97 E-value=74 Score=21.47 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=26.0
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEV 120 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~el 120 (159)
.|.+..+|.+..++..+.+-|.+++|++-
T Consensus 53 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~ 81 (148)
T 3nrv_A 53 SDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 46799999999999999999999998864
No 154
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=24.94 E-value=98 Score=21.75 Aligned_cols=35 Identities=11% Similarity=0.311 Sum_probs=26.6
Q ss_pred hCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy6286 91 CEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLV 125 (159)
Q Consensus 91 a~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~ 125 (159)
..|.|..+|++.+++..|+|-+.+.-=++|+..+.
T Consensus 32 ~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~ 66 (204)
T 2ibd_A 32 LRATTVRDIADAAGILSGSLYHHFDSKESMVDEIL 66 (204)
T ss_dssp STTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHH
T ss_pred chhcCHHHHHHHhCCCchhHHHhcCCHHHHHHHHH
Confidence 36789999999999999998887766666655543
No 155
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=24.93 E-value=37 Score=23.37 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=28.9
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.+.|..+|++.+++..|+|-+.+.--++|+..+..
T Consensus 28 ~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 62 (195)
T 3ppb_A 28 HGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFL 62 (195)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHH
Confidence 56799999999999999999988877777776643
No 156
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=24.86 E-value=79 Score=21.83 Aligned_cols=35 Identities=6% Similarity=0.247 Sum_probs=28.4
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|+|-+.+.--++|+..+..
T Consensus 36 ~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 70 (206)
T 3kz9_A 36 GRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLN 70 (206)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHH
T ss_pred ccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 55789999999999999998888777777766544
No 157
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.62 E-value=52 Score=23.44 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=27.8
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++..++..|+|-+.+.-=++|+..+..
T Consensus 27 ~~~s~~~IA~~aGvs~~tiY~~F~sKe~L~~~v~~ 61 (202)
T 2d6y_A 27 AGARIDRIAAEARANKQLIYAYYGNKGELFASVLE 61 (202)
T ss_dssp TSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 56788888888888888888888877777776543
No 158
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=24.61 E-value=78 Score=22.15 Aligned_cols=35 Identities=6% Similarity=0.003 Sum_probs=28.1
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++..++..|+|-+.+.-=++|+..+..
T Consensus 27 ~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 61 (199)
T 2o7t_A 27 DSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQ 61 (199)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 56799999999999999998887777776666543
No 159
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=24.57 E-value=75 Score=22.34 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=24.3
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQL 124 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql 124 (159)
.|.|..+|++.+++..|+|=+.+.-=++|+..+
T Consensus 28 ~~~t~~~Ia~~Agvs~gt~Y~yF~sKe~L~~~~ 60 (204)
T 3anp_C 28 QETTATEIAKAAHVSRGTFFNYYPYKEAVLLDY 60 (204)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSTHHHHHHH
T ss_pred ccccHHHHHHHcCCchHHHHHHcCCHHHHHHHH
Confidence 567889999999999888877665555555443
No 160
>3zr8_X AVR3A11; protein binding, plant pathogen interactions; HET: PGE; 0.90A {Phytophthora capsici}
Probab=24.44 E-value=45 Score=21.24 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=17.7
Q ss_pred CchHHHHHHHh--hCCCCHHHHHh
Q psy6286 80 KPSLMDVVHAW--CEGASFLKVCS 101 (159)
Q Consensus 80 ~~~l~~~v~~W--a~G~~f~~i~~ 101 (159)
||+....||.| ++|.|+.+|-.
T Consensus 18 D~~~a~~vY~kW~~kgytl~qI~~ 41 (65)
T 3zr8_X 18 DPSKADDVYQKWADKGYTLTQLSD 41 (65)
T ss_dssp CGGGHHHHHHHHHHHTCCHHHHGG
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHH
Confidence 67778888877 69999999853
No 161
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=24.34 E-value=98 Score=21.13 Aligned_cols=32 Identities=6% Similarity=0.077 Sum_probs=27.2
Q ss_pred HHhh-CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 88 HAWC-EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 88 ~~Wa-~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+-|. .|.+..+|.+..++..+.+-|.+++|++
T Consensus 52 ~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 52 YVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp HHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344 4679999999999999999999999886
No 162
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=24.30 E-value=1.3e+02 Score=20.56 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhhhCChHHHHHHHHHHHhhcCC
Q psy6286 116 RLEEVLRQLVQASRNIGNTLLEEKFNEAIKTVKRD 150 (159)
Q Consensus 116 Rl~elLrql~~a~~~ig~~~L~~k~~~a~~~I~Rd 150 (159)
.+.++...+..++.++|=|.|...+.+.-...|.+
T Consensus 51 ~l~~~aHkLkGaa~~~Ga~~L~~~~~~LE~~~r~~ 85 (119)
T 3myf_A 51 TMLSTIHKLHGASCYCGVPTTQRLCQEIESALKRQ 85 (119)
T ss_dssp HHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcC
Confidence 44555666777777777777766666655555554
No 163
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=24.22 E-value=37 Score=25.45 Aligned_cols=46 Identities=7% Similarity=0.077 Sum_probs=38.1
Q ss_pred HHHHHhhCCCCHHHHHhh--cCCCccHHHHHHHHHHHHHHHHHHhhhh
Q psy6286 85 DVVHAWCEGASFLKVCSI--TDIFEGSIIRCMRRLEEVLRQLVQASRN 130 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~--t~l~EG~iVR~~rRl~elLrql~~a~~~ 130 (159)
.++.+|+.|.++.+.+.. ..+.+..+.++++++.+.|..+.+..-+
T Consensus 95 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~ 142 (283)
T 3gen_A 95 FIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFL 142 (283)
T ss_dssp EEEECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 467778999999999876 5789999999999999999888876433
No 164
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=24.21 E-value=91 Score=22.94 Aligned_cols=35 Identities=3% Similarity=-0.012 Sum_probs=27.4
Q ss_pred CCCHHHHHhhcCCCccHHHHHHHHHH---HHHHHHHHh
Q psy6286 93 GASFLKVCSITDIFEGSIIRCMRRLE---EVLRQLVQA 127 (159)
Q Consensus 93 G~~f~~i~~~t~l~EG~iVR~~rRl~---elLrql~~a 127 (159)
|.|..+|.+..++..+.+-||.++.- +.+..++..
T Consensus 48 ~lTv~eIA~~LGIS~~TLyrW~k~~p~~~~~l~~vad~ 85 (155)
T 2ao9_A 48 KRTQDEMANELGINRTTLWEWRTKNQDFIAFKSEVADS 85 (155)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHcCcchHHHHHHHHHH
Confidence 88999999999999999999999543 334444443
No 165
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A*
Probab=24.17 E-value=45 Score=28.70 Aligned_cols=39 Identities=8% Similarity=0.111 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhCChHHHHHHHHHHHhhcCCcc
Q psy6286 110 IIRCMRRLEEVLRQLVQASRNIGNTLLEEKFNEAIKTVKRDIF 152 (159)
Q Consensus 110 iVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a~~~I~RdIV 152 (159)
.++.++++.++++.+ .+.|+++|++++++..+.|+.+|.
T Consensus 233 ~~v~L~~~aei~~~~----~v~~d~~la~~~~~la~eIr~~I~ 271 (426)
T 3qry_B 233 AVVVLGYVQEIFAAL----NLADSQSVIADAKRLQDEIQEGIK 271 (426)
T ss_dssp HHHHHHHHHHHHHHH----TCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----cccCcHHHHHHHHHHHHHHHHHHH
Confidence 456777777666533 233677888888877777776553
No 166
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=24.08 E-value=94 Score=22.30 Aligned_cols=35 Identities=3% Similarity=0.201 Sum_probs=29.1
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++..++..|.|-+.+.-=++|+.++..
T Consensus 54 ~~~t~~~IA~~AGvs~~tlY~~F~sKe~L~~~~~~ 88 (221)
T 3g7r_A 54 HSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLD 88 (221)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 56899999999999999999888777777766554
No 167
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=23.98 E-value=91 Score=21.74 Aligned_cols=49 Identities=8% Similarity=0.031 Sum_probs=39.1
Q ss_pred ccCCchHHHHHHH-hhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy6286 77 NQFKPSLMDVVHA-WCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLV 125 (159)
Q Consensus 77 ~~~~~~l~~~v~~-Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~ 125 (159)
..+.+.--.++.. ...|.|..||-+..++++|.+=..+.|.-.-|++.-
T Consensus 92 ~~Lp~~~r~vl~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l 141 (157)
T 2lfw_A 92 ARMTPLSRQALLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQT 141 (157)
T ss_dssp TTSCTTHHHHHTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4566666666654 579999999999999999999888888887777643
No 168
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=23.78 E-value=67 Score=20.89 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=29.0
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 81 PSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 81 ~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..+...+ -..+.+..+|.+..++..+.+-|.+++|.+
T Consensus 24 ~~IL~~L--~~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 24 WEILTEL--GRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HHHHHHH--HHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444 246679999999999999999999988865
No 169
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=23.61 E-value=1.1e+02 Score=21.43 Aligned_cols=33 Identities=12% Similarity=0.157 Sum_probs=25.3
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQL 124 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql 124 (159)
.|.|..+|++.+++..|+|-+.+.-=++|+..+
T Consensus 26 ~~ts~~~IA~~aGvs~gtlY~~F~sKe~L~~av 58 (197)
T 2gen_A 26 DATTIEMIRDRSGASIGSLYHHFGNKERIHGEL 58 (197)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHH
T ss_pred ccCCHHHHHHHHCCChHHHHHHCCCHHHHHHHH
Confidence 567899999999999999888776555555543
No 170
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=23.44 E-value=52 Score=22.67 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhCCccCC----CccchhhHH
Q psy6286 6 MEELKCRKRVLRRLGYATEA----DVIEMKGRV 34 (159)
Q Consensus 6 ~~e~~~~~~vL~~lgyid~~----~~vt~kGrv 34 (159)
.+-..++++.|++.|+|... ..+|.+|+-
T Consensus 43 ~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~ 75 (111)
T 3b73_A 43 KSSVSRRLKKLADHDLLQPLANGVYVITEEGEA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTSEEECSTTCEEECHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEecCCceEEECchHHH
Confidence 46778999999999999753 268888863
No 171
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=23.41 E-value=1.1e+02 Score=18.33 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=23.0
Q ss_pred HHHHHHhhhhhCChHHHHHHHHHHHh---------hcCCcccc
Q psy6286 121 LRQLVQASRNIGNTLLEEKFNEAIKT---------VKRDIFLE 154 (159)
Q Consensus 121 Lrql~~a~~~ig~~~L~~k~~~a~~~---------I~RdIV~~ 154 (159)
|.||.+-| |+||..+++|+.-+.. |||+|+=+
T Consensus 7 l~~l~kdC--i~np~~r~~Fe~ki~~~~tE~q~k~iKr~IIRs 47 (49)
T 3bbz_A 7 ITKMITDS--VANPQMKQAFEQRLAKASTEDALNDIKRDIIRS 47 (49)
T ss_dssp HHHHHHHH--CCSHHHHHHHHHHHHTCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 55666665 4899999999877654 66777644
No 172
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=23.41 E-value=1.1e+02 Score=21.39 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=27.6
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLV 125 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~ 125 (159)
.|.|..+|++.+++..|+|=+.+.-=++|+..+.
T Consensus 24 ~~~s~~~IA~~AgvskgtlY~yF~sKe~L~~~~~ 57 (202)
T 2id6_A 24 DRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAY 57 (202)
T ss_dssp HHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 4689999999999999999888777666666543
No 173
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.36 E-value=72 Score=23.18 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=29.5
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.+.|+.+|.+..++..|++-+.+.--++|+..+..-
T Consensus 35 ~~~s~~~IA~~agvs~~t~Y~~F~~K~~L~~a~~~~ 70 (216)
T 2oi8_A 35 SALSLNAIAKRMGMSGPALYRYFDGRDELITELIRD 70 (216)
T ss_dssp TSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 567999999999999999988887777777766544
No 174
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=23.36 E-value=1.1e+02 Score=21.52 Aligned_cols=34 Identities=9% Similarity=0.242 Sum_probs=27.2
Q ss_pred CCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 93 GASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 93 G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
+.|..+|++.+++..|+|-+.+.-=++|+..+..
T Consensus 32 ~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~ 65 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAE 65 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHH
Confidence 5789999999999999998887777777766543
No 175
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=23.31 E-value=1.2e+02 Score=20.57 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=24.7
Q ss_pred hCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 91 CEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 91 a~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..+.+..+|.+..++..+.+-|.+++|.+
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~Le~ 48 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQKLDK 48 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 36779999999999999999998888876
No 176
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=23.10 E-value=1.1e+02 Score=19.50 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=24.9
Q ss_pred hCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 91 CEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 91 a~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..+.++.+|.+..++....+-|.+++|.+
T Consensus 41 ~~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56789999999999999999888877765
No 177
>3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A*
Probab=23.01 E-value=67 Score=21.56 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=13.1
Q ss_pred CChHHHHHHHHHHHhhcCCccccc
Q psy6286 132 GNTLLEEKFNEAIKTVKRDIFLEI 155 (159)
Q Consensus 132 g~~~L~~k~~~a~~~I~RdIV~~~ 155 (159)
+|+.+++.+.++.+.|++|.=++.
T Consensus 43 ~~~~l~~~l~~i~~~l~~G~sls~ 66 (123)
T 3c1q_A 43 EKPRIRTMLVAVRAKVTEGYTLSD 66 (123)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHH
Confidence 455555556666655555544433
No 178
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=23.01 E-value=35 Score=23.79 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=29.8
Q ss_pred hCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 91 CEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 91 a~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
..|.|..+|++.+++..|+|-+.+.--++|+..+..-
T Consensus 35 ~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 71 (208)
T 3cwr_A 35 AAAMTMEGVASEAGIAKKTLYRFASGRADLIGLLVES 71 (208)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 3677888888888888888888888888888776543
No 179
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=22.98 E-value=80 Score=22.79 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=29.6
Q ss_pred hHHHHHHHh-hCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAW-CEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~W-a~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++.. -.|.+..+|.+..++..+.+-|.+.+|.+
T Consensus 45 ~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 83 (189)
T 3nqo_A 45 MTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEK 83 (189)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444433 24789999999999999999999999875
No 180
>1dj8_A HDEA, protein HNS-dependent expression A; alpha helical, structural protein; 2.00A {Escherichia coli} SCOP: a.57.1.1 PDB: 1bg8_A
Probab=22.80 E-value=70 Score=21.44 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=40.0
Q ss_pred hhhhccCCchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhhhhhCChHHHHHHHHHHHhhcCC
Q psy6286 73 DSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKFNEAIKTVKRD 150 (159)
Q Consensus 73 ~~~~~~~~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~~~ig~~~L~~k~~~a~~~I~Rd 150 (159)
++|+ .+++.++..+--|+.|. .+.-..||=|=-+.-++-+--++...|+--+...|..+++.....|+.+
T Consensus 19 ~eFl-~ld~~~~p~v~~W~~~~-------~~~~k~~d~vvD~~~~e~v~P~vve~Ckk~P~~sl~~~i~~~~~k~~~~ 88 (89)
T 1dj8_A 19 EDFL-AVDESFQPTAVGFAEAL-------NNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGEWDKIKKD 88 (89)
T ss_dssp HHHH-TSCGGGHHHHHHHHHHH-------HHCSCGGGCCCCHHHHHHHHHHHHHHHHTTTTSBHHHHHHHHHTTSCC-
T ss_pred HHHH-hCChhhhhHHHHHHHhc-------ccCCCCCCceeehhHHHHhhHHHHHHHHhCchhHHHHHHHHHHHHHhhc
Confidence 5676 78999999999998653 2223333211111222222333333333335667888999988888875
No 181
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=22.80 E-value=47 Score=25.91 Aligned_cols=38 Identities=21% Similarity=0.195 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhhCCccCC-----CccchhhHHHhhhcCCCce
Q psy6286 7 EELKCRKRVLRRLGYATEA-----DVIEMKGRVACELSKSEET 44 (159)
Q Consensus 7 ~e~~~~~~vL~~lgyid~~-----~~vt~kGrva~~I~s~~eL 44 (159)
+...++++-|++.|||... -.+|.+|+.+.++...-++
T Consensus 181 sTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~~~~~~~~ 223 (244)
T 2wte_A 181 KTLINKIAELKKFGILTQKGKDRKVELNELGLNVIKLNKSVIE 223 (244)
T ss_dssp HHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHHHHhcccc
Confidence 4567899999999999753 2789999998877654443
No 182
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=22.77 E-value=1.1e+02 Score=21.02 Aligned_cols=36 Identities=17% Similarity=0.400 Sum_probs=28.8
Q ss_pred hCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 91 CEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 91 a~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
..|.|..+|++.+++..|.|-+.+.--++|+..+..
T Consensus 26 ~~~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~~ 61 (194)
T 3dpj_A 26 FAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIR 61 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred cccCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHHH
Confidence 367799999999999999998888777777766543
No 183
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=22.77 E-value=42 Score=24.75 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=37.4
Q ss_pred HHHHHHhhCCCCHHHHHhhc--CCCccHHHHHHHHHHHHHHHHHHhhhh
Q psy6286 84 MDVVHAWCEGASFLKVCSIT--DIFEGSIIRCMRRLEEVLRQLVQASRN 130 (159)
Q Consensus 84 ~~~v~~Wa~G~~f~~i~~~t--~l~EG~iVR~~rRl~elLrql~~a~~~ 130 (159)
..++.+++.|.++.+.+... .+.+..+.+++.++.+-|..+.+..-+
T Consensus 78 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~ 126 (267)
T 3t9t_A 78 ICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVI 126 (267)
T ss_dssp CEEEECCCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEeCCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 34677899999999999764 378888999999998888888766433
No 184
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=22.76 E-value=24 Score=26.97 Aligned_cols=47 Identities=9% Similarity=0.161 Sum_probs=38.4
Q ss_pred HHHHHHhhCCCCHHHHHhhcC--CCccHHHHHHHHHHHHHHHHHHhhhh
Q psy6286 84 MDVVHAWCEGASFLKVCSITD--IFEGSIIRCMRRLEEVLRQLVQASRN 130 (159)
Q Consensus 84 ~~~v~~Wa~G~~f~~i~~~t~--l~EG~iVR~~rRl~elLrql~~a~~~ 130 (159)
..++.+|+.|.++.+.+.... +.+..+.+.+.++.+-|..+.+..-+
T Consensus 104 ~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~ 152 (319)
T 2y4i_B 104 LAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGIL 152 (319)
T ss_dssp EEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 346677899999999998754 89999999999999999888876433
No 185
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=22.71 E-value=55 Score=21.65 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=28.7
Q ss_pred chHHHHHHHhhCCCCHHHHHhhcC----CCccHHHHHHHHHHH
Q psy6286 81 PSLMDVVHAWCEGASFLKVCSITD----IFEGSIIRCMRRLEE 119 (159)
Q Consensus 81 ~~l~~~v~~Wa~G~~f~~i~~~t~----l~EG~iVR~~rRl~e 119 (159)
+.++.+++. ..|.+..+|.+..+ +..+++-|.+.||.+
T Consensus 13 ~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 13 WEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp HHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 344444444 46779999998876 789999999999876
No 186
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=22.53 E-value=76 Score=22.58 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=27.1
Q ss_pred hCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy6286 91 CEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLV 125 (159)
Q Consensus 91 a~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~ 125 (159)
..|.|..+|++.+++..|+|=+.+.-=+||+..+.
T Consensus 26 y~~~s~~~IA~~AGvs~gt~Y~yF~sKe~L~~~v~ 60 (206)
T 1vi0_A 26 YHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLF 60 (206)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred cccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHH
Confidence 35679999999999999999887766666665543
No 187
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=22.36 E-value=38 Score=25.89 Aligned_cols=45 Identities=4% Similarity=0.096 Sum_probs=37.3
Q ss_pred HHHHHhhCCCCHHHHHhh--cCCCccHHHHHHHHHHHHHHHHHHhhh
Q psy6286 85 DVVHAWCEGASFLKVCSI--TDIFEGSIIRCMRRLEEVLRQLVQASR 129 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~--t~l~EG~iVR~~rRl~elLrql~~a~~ 129 (159)
.+|.+++.|.++.+.++. ..+.+..+.+++.++.+-|..+.+..-
T Consensus 83 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i 129 (310)
T 3s95_A 83 NFITEYIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNI 129 (310)
T ss_dssp EEEEECCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred EEEEEecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence 356788999999999987 568889999999999888888876643
No 188
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=22.29 E-value=45 Score=23.54 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=29.1
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|+|-+.+.--+||+..+..
T Consensus 31 ~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~ 65 (189)
T 3vp5_A 31 HEAKIMHIVKALDIPRGSFYQYFEDLKDAYFYVLS 65 (189)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccccHHHHHHHhCCChHHHHHHCCCHHHHHHHHHH
Confidence 56699999999999999999988877777776543
No 189
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=22.15 E-value=50 Score=24.25 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=19.9
Q ss_pred HHHHHHHhhhCCccCC---C-ccchhhHH
Q psy6286 10 KCRKRVLRRLGYATEA---D-VIEMKGRV 34 (159)
Q Consensus 10 ~~~~~vL~~lgyid~~---~-~vt~kGrv 34 (159)
+..++-|+++|+++.+ | .+|.+|+-
T Consensus 102 R~~LQqLE~~g~vek~~~~GR~lT~~G~~ 130 (144)
T 3u5c_T 102 RKVLQALEKIGIVEISPKGGRRISENGQR 130 (144)
T ss_dssp HHHHHHHHHTTSEECCSSSSCEECHHHHH
T ss_pred HHHHHHHHHCCCeeecCCCCcEECHhHHH
Confidence 5678899999999764 2 78999874
No 190
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=22.14 E-value=65 Score=22.32 Aligned_cols=27 Identities=15% Similarity=0.187 Sum_probs=24.5
Q ss_pred CCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 93 GASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 93 G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+.|+.+|.+..++.+..+-|.+++|.+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 469999999999999999999988876
No 191
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=22.04 E-value=66 Score=22.36 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=24.7
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.+.|+.+|.+..++.+..+-|.+++|.+
T Consensus 20 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 20 GRATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3469999999999999999998888875
No 192
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=21.93 E-value=89 Score=23.01 Aligned_cols=36 Identities=17% Similarity=0.077 Sum_probs=28.5
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.|.|..+|++..++..|.|-+.+.--++|+..+...
T Consensus 62 ~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v~~~ 97 (255)
T 3g1o_A 62 ADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDR 97 (255)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 356999999999999999988877777776665443
No 193
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=21.92 E-value=50 Score=23.57 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=31.2
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.|.|..+|++.+++..|+|-+.+.--++|+..+..-
T Consensus 47 ~~~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~ 82 (215)
T 2qko_A 47 RGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGKR 82 (215)
T ss_dssp TTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHcCCCcchHHHhCCCHHHHHHHHHHH
Confidence 567999999999999999999999888888887654
No 194
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=21.91 E-value=56 Score=23.16 Aligned_cols=34 Identities=12% Similarity=0.330 Sum_probs=26.2
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLV 125 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~ 125 (159)
.|.|..+|++.+++..|+|-+.+.-=++|+..+.
T Consensus 30 ~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~~~~ 63 (210)
T 2xdn_A 30 ARTTLADIAELAGVTRGAIYWHFNNKAELVQALL 63 (210)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHH
T ss_pred ccCcHHHHHHHHCCChHHHHHHhCCHHHHHHHHH
Confidence 5678888999988888888887776666665544
No 195
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=21.90 E-value=38 Score=25.44 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=35.8
Q ss_pred HHHHHhhCCCCHHHHHhhcC--CCccHHHHHHHHHHHHHHHHHHhh
Q psy6286 85 DVVHAWCEGASFLKVCSITD--IFEGSIIRCMRRLEEVLRQLVQAS 128 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~--l~EG~iVR~~rRl~elLrql~~a~ 128 (159)
.++.+|+.|.++.+.+.... +.+..+.+.++++.+-|..+....
T Consensus 88 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ 133 (289)
T 4fvq_A 88 ILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENT 133 (289)
T ss_dssp EEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCC
Confidence 36788999999999998754 888888888888888888876554
No 196
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=21.79 E-value=71 Score=21.14 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=29.0
Q ss_pred hHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 82 SLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
.++..++. ..|.+..+|.+..++..+.+-|.+++|++
T Consensus 42 ~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~~ 78 (140)
T 2nnn_A 42 AALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLDK 78 (140)
T ss_dssp HHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444432 35789999999999999999999999886
No 197
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=21.71 E-value=62 Score=24.86 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhhCCccCC--C-ccchhhHH-HhhhcC
Q psy6286 7 EELKCRKRVLRRLGYATEA--D-VIEMKGRV-ACELSK 40 (159)
Q Consensus 7 ~e~~~~~~vL~~lgyid~~--~-~vt~kGrv-a~~I~s 40 (159)
+.-..+++.|++.|||+.+ + .+|.+|+- |.+++.
T Consensus 45 ~SV~~~lkkL~e~GLV~~~~~Gv~LTe~G~~~A~~i~~ 82 (200)
T 2p8t_A 45 GSVRTLLRKLSHLDIIRSKQRGHFLTLKGKEIRDKLLS 82 (200)
T ss_dssp HHHHHHHHHHHHTTSEEEC--CEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCEEEeCCCeEECHHHHHHHHHHHH
Confidence 5667899999999999653 3 79999984 334433
No 198
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=21.70 E-value=59 Score=21.54 Aligned_cols=38 Identities=8% Similarity=0.135 Sum_probs=28.5
Q ss_pred CchHHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 80 KPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 80 ~~~l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
+..+...+. ..+.++.+|.+..++..+.+-|.+++|.+
T Consensus 27 r~~IL~~L~--~~~~s~~eLa~~lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 27 RLQILDLLA--QGERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp THHHHHHHT--TCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 334444433 25569999999999999999998888765
No 199
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=21.66 E-value=48 Score=23.24 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=27.4
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLV 125 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~ 125 (159)
.|.|..+|++..++..|+|-+.+.--++|+..+.
T Consensus 23 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 56 (185)
T 2yve_A 23 ETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMH 56 (185)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred hhccHHHHHHHhCCChHHHHHhCcCHHHHHHHHH
Confidence 4568999999999999999888877777776654
No 200
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=21.55 E-value=1.2e+02 Score=20.95 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhhhhCChHHHHHHHHHHHhhcCC
Q psy6286 116 RLEEVLRQLVQASRNIGNTLLEEKFNEAIKTVKRD 150 (159)
Q Consensus 116 Rl~elLrql~~a~~~ig~~~L~~k~~~a~~~I~Rd 150 (159)
.+.++...|..++.++|-|.|.+.+...-...|.+
T Consensus 60 ~l~~~aHkLkGaa~~~Ga~~L~~~c~~LE~~~r~g 94 (123)
T 3iqt_A 60 GLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSG 94 (123)
T ss_dssp THHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcC
Confidence 34455566666666667666666666555555544
No 201
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=21.36 E-value=49 Score=22.87 Aligned_cols=35 Identities=14% Similarity=0.390 Sum_probs=27.2
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|+|-+.+.-=+||+..+..
T Consensus 21 ~~~s~~~Ia~~agvskgtlY~~F~sKe~L~~~~~~ 55 (179)
T 2eh3_A 21 QGTSVEEIVKRANLSKGAFYFHFKSKEELITEIIE 55 (179)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcHHHHHHcCCHHHHHHHHHH
Confidence 56789999999999999888887776776666543
No 202
>2imu_A Structural polyprotein (PP) P1; IBDV, birnavirus, DPC, VP2, pore formation, viral protein; NMR {Synthetic}
Probab=21.30 E-value=42 Score=19.85 Aligned_cols=10 Identities=50% Similarity=0.909 Sum_probs=7.4
Q ss_pred cHHHHHHHHH
Q psy6286 108 GSIIRCMRRL 117 (159)
Q Consensus 108 G~iVR~~rRl 117 (159)
+|+||.+||.
T Consensus 4 ~Diir~irr~ 13 (46)
T 2imu_A 4 KDIIRAIRRI 13 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5778777776
No 203
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=21.28 E-value=63 Score=22.80 Aligned_cols=34 Identities=12% Similarity=0.323 Sum_probs=24.5
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLV 125 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~ 125 (159)
.|.|..+|++.+++..|+|-+.+.-=++|+..+.
T Consensus 30 ~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~ 63 (212)
T 2ras_A 30 AGLTLSELAARAGISQANLSRYFETREDLMEAIA 63 (212)
T ss_dssp SCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHH
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 5678888888888888887776666666665543
No 204
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=21.28 E-value=87 Score=21.37 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=26.1
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.+.|..+|++.+++..|+|-+.+.--++|+..+..
T Consensus 27 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 61 (195)
T 3pas_A 27 SATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFY 61 (195)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred HhcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHH
Confidence 45788888888888888888877766666666543
No 205
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=21.19 E-value=1.1e+02 Score=21.29 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=25.5
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQL 124 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql 124 (159)
.|.|..+|++.+++..|.+-+.+.-=++|+..+
T Consensus 29 ~~~s~~~IA~~aGvs~gtlY~yF~sKe~L~~a~ 61 (194)
T 2nx4_A 29 EAANMRDIATEAGYTNGALSHYFAGKDEILRTS 61 (194)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCcchHHHhCcCHHHHHHHH
Confidence 578999999999999999888776555555443
No 206
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=21.02 E-value=47 Score=24.73 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=37.4
Q ss_pred HHHHHHhhCCCCHHHHHhhc--CCCccHHHHHHHHHHHHHHHHHHhhhh
Q psy6286 84 MDVVHAWCEGASFLKVCSIT--DIFEGSIIRCMRRLEEVLRQLVQASRN 130 (159)
Q Consensus 84 ~~~v~~Wa~G~~f~~i~~~t--~l~EG~iVR~~rRl~elLrql~~a~~~ 130 (159)
..++.+|+.|.++.+.+... .+.+-.+.+++.++.+-|..+.+..-+
T Consensus 80 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~ 128 (269)
T 4hcu_A 80 ICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVI 128 (269)
T ss_dssp EEEEEECCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEEeCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCee
Confidence 34677899999999999664 388888999999998888888776533
No 207
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=21.00 E-value=35 Score=25.46 Aligned_cols=46 Identities=2% Similarity=0.076 Sum_probs=36.6
Q ss_pred HHHHHHhhCCCCHHHHHhh---cCCCccHHHHHHHHHHHHHHHHHHhhh
Q psy6286 84 MDVVHAWCEGASFLKVCSI---TDIFEGSIIRCMRRLEEVLRQLVQASR 129 (159)
Q Consensus 84 ~~~v~~Wa~G~~f~~i~~~---t~l~EG~iVR~~rRl~elLrql~~a~~ 129 (159)
.-++.+|+.|.++.+.+.. ..+.+-.+.++++++.+-|..+.+..-
T Consensus 95 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i 143 (284)
T 2a19_B 95 LFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKL 143 (284)
T ss_dssp EEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred EEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence 3467789999999999865 468888888988888888888876543
No 208
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=20.95 E-value=41 Score=25.74 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=37.7
Q ss_pred HHHHHhhCCCCHHHHHhhc-CCCccHHHHHHHHHHHHHHHHHHhhhh
Q psy6286 85 DVVHAWCEGASFLKVCSIT-DIFEGSIIRCMRRLEEVLRQLVQASRN 130 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t-~l~EG~iVR~~rRl~elLrql~~a~~~ 130 (159)
.++.+|+.|.++.+.+... .+.+..+.++++++.+.|..+....-+
T Consensus 87 ~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~ 133 (294)
T 4eqm_A 87 YLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIV 133 (294)
T ss_dssp EEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 4677899999999998764 588999999999999999888776533
No 209
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=20.82 E-value=76 Score=23.40 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=39.7
Q ss_pred HHHHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhh
Q psy6286 83 LMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQAS 128 (159)
Q Consensus 83 l~~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~ 128 (159)
...++.+|+.|.++.+++....+.+..+.+++.++.+-|..+....
T Consensus 80 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~ 125 (271)
T 3dtc_A 80 NLCLVMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEA 125 (271)
T ss_dssp -CEEEEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ceEEEEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456778999999999999889999999999999999999888765
No 210
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=20.81 E-value=29 Score=26.89 Aligned_cols=47 Identities=4% Similarity=0.021 Sum_probs=38.5
Q ss_pred HHHHHHhhCCCCHHHHHhh--cCCCccHHHHHHHHHHHHHHHHHHhhhh
Q psy6286 84 MDVVHAWCEGASFLKVCSI--TDIFEGSIIRCMRRLEEVLRQLVQASRN 130 (159)
Q Consensus 84 ~~~v~~Wa~G~~f~~i~~~--t~l~EG~iVR~~rRl~elLrql~~a~~~ 130 (159)
..++.+|+.|.++.+.+.. ..+.+..+.+++.++.+-|..+....-+
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~iv 149 (327)
T 3lxl_A 101 LRLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCV 149 (327)
T ss_dssp EEEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 4477889999999999976 4589999999999999998888776433
No 211
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=20.61 E-value=50 Score=22.81 Aligned_cols=36 Identities=11% Similarity=0.150 Sum_probs=29.4
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.|.|..+|++.+++..|+|-+.+.--++|+..+..-
T Consensus 26 ~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~ 61 (186)
T 2jj7_A 26 EGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKK 61 (186)
T ss_dssp HHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChhhhhhhcCCHHHHHHHHHHH
Confidence 457888898888999998888888888888776554
No 212
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=20.42 E-value=32 Score=26.33 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=38.1
Q ss_pred hHHHHHHHhhCCCCHHHHHhhc---CCCccHHHHHHHHHHHHHHHHHHhh
Q psy6286 82 SLMDVVHAWCEGASFLKVCSIT---DIFEGSIIRCMRRLEEVLRQLVQAS 128 (159)
Q Consensus 82 ~l~~~v~~Wa~G~~f~~i~~~t---~l~EG~iVR~~rRl~elLrql~~a~ 128 (159)
+...++.+|+.|.++.+.+... .+.+..+.+++.++.+-|..+....
T Consensus 88 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ 137 (299)
T 3m2w_A 88 KCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSIN 137 (299)
T ss_dssp EEEEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 3345677899999999999875 4889999999999988888887654
No 213
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=20.33 E-value=77 Score=21.55 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=24.5
Q ss_pred CCCHHHHHhhcCCCccHHHHHHHHHHH
Q psy6286 93 GASFLKVCSITDIFEGSIIRCMRRLEE 119 (159)
Q Consensus 93 G~~f~~i~~~t~l~EG~iVR~~rRl~e 119 (159)
..|+.+|.+..++.+..+-|.+++|.+
T Consensus 18 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 18 RTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 469999999999999999999988876
No 214
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=20.30 E-value=94 Score=21.58 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=27.9
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQ 126 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~ 126 (159)
.|.|..+|++.+++..|+|-+.+.--++|+..+..
T Consensus 33 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~ 67 (215)
T 3e7q_A 33 QGASVRKICAEAGVSVGLINHHYDGKDALVAEAYL 67 (215)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHH
Confidence 56799999999999999998887776666666544
No 215
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=20.26 E-value=43 Score=22.84 Aligned_cols=36 Identities=11% Similarity=0.147 Sum_probs=31.4
Q ss_pred CCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHh
Q psy6286 92 EGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127 (159)
Q Consensus 92 ~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a 127 (159)
.|.|..+|++..++..|+|-+.+.--++|+..+..-
T Consensus 23 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~ 58 (170)
T 3egq_A 23 HEVSIEEIAREAKVSKSLIFYHFESKQKLLEEAVMH 58 (170)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHH
T ss_pred ccCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHHHH
Confidence 457999999999999999999999888888887654
No 216
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=20.22 E-value=26 Score=26.63 Aligned_cols=47 Identities=17% Similarity=0.113 Sum_probs=37.2
Q ss_pred HHHHHhhCCCCHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHhhhhhC
Q psy6286 85 DVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQASRNIG 132 (159)
Q Consensus 85 ~~v~~Wa~G~~f~~i~~~t~l~EG~iVR~~rRl~elLrql~~a~~~ig 132 (159)
.++.+++.| ++.+.++...+.+-.+.+.++++.+-|..+.+..-+.+
T Consensus 98 ~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~ 144 (320)
T 2i6l_A 98 YIVQEYMET-DLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHR 144 (320)
T ss_dssp EEEEECCSE-EHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCBCC
T ss_pred eEEeeccCC-CHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCCEecC
Confidence 456778887 89999988889999999999998888888876643333
Done!