RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy6286
(159 letters)
>d1muka_ e.8.1.4 (A:) Reovirus polymerase lambda3 {Reovirus [TaxId:
10891]}
Length = 1264
Score = 28.0 bits (62), Expect = 0.52
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 81 PSLMDVVHAWCEG---ASFLKVCSITDIFEGSIIRCMRRLEEVLRQLVQA 127
PSL DV H W +G A+ + ++ E +++R R +L++A
Sbjct: 1006 PSLFDVPHKWYQGAQEAAIATREELAEMDE-TLMRARRHSYSSFSKLLEA 1054
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 198
Score = 27.5 bits (61), Expect = 0.54
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 65 ESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRLEEVLRQL 124
S ++ D ++++ K +L + W E ++C+ I G + RR+ E L
Sbjct: 59 PSDFSVEYDWFLSEVKTALC--LKDWIEEKDEDEICAKYGIAPGDL----RRIVETAEWL 112
Query: 125 VQASRNIGNTLLEEKFNEAIKTVKRDIFLEILE 157
A I + + + +K + E+LE
Sbjct: 113 SNAMNRIAEEVGNTSVSGLTERIKHGVKEELLE 145
>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 65
Score = 24.3 bits (53), Expect = 2.4
Identities = 8/36 (22%), Positives = 20/36 (55%)
Query: 116 RLEEVLRQLVQASRNIGNTLLEEKFNEAIKTVKRDI 151
RL+ ++R L ++ + L E+ + + + + +DI
Sbjct: 8 RLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDI 43
>d2h85a2 d.294.1.2 (A:191-345) Nsp15, C-terminal domain {SARS
coronavirus [TaxId: 227859]}
Length = 155
Score = 25.2 bits (55), Expect = 3.5
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 60 ARISIESKLDLDEDSYVNQFKPSLMDVVHAWCEGASFLKVCSITDI 105
A+ S +S L L++ ++ + + S CS+ D+
Sbjct: 65 AKRSQDSPLKLED---FIPMDSTVKNYFITDAQTGSSKCGCSVIDL 107
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 485
Score = 25.4 bits (54), Expect = 4.1
Identities = 17/95 (17%), Positives = 34/95 (35%)
Query: 23 TEADVIEMKGRVACELSKSEETVILTINDKLELARHIARISIESKLDLDEDSYVNQFKPS 82
TEA E++GR+ + + + D R + I +++ Q +
Sbjct: 65 TEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQWLLLAERQMDEA 124
Query: 83 LMDVVHAWCEGASFLKVCSITDIFEGSIIRCMRRL 117
+ +H +C+ L +FE +I L
Sbjct: 125 AVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLL 159
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 223
Score = 24.9 bits (53), Expect = 4.5
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 132 GNTLLEEKFNEAIKTVKRDIFLEILEN 158
G+ L +K N A+KT++ + +
Sbjct: 189 GSDELRDKVNGALKTLRENGTYNEIYK 215
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA
{Campylobacter jejuni [TaxId: 197]}
Length = 248
Score = 25.0 bits (53), Expect = 5.1
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 132 GNTLLEEKFNEAIKTVKRDIFLEILEN 158
G+ L+E + I + ++ F +
Sbjct: 202 GDKELKEFIDNLIIKLGQEQFFHKAYD 228
>d1w96a3 d.142.1.2 (A:184-450) Acetyl-CoA carboxylase, BC-M
subdomain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 267
Score = 24.7 bits (52), Expect = 5.6
Identities = 7/62 (11%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 21 YATEADVIEMKGRVACELSKSEETVILTINDKLELARHIARISIESKLDLDEDSYVNQFK 80
+ ++ + ++A + + I T+ + I+ + +D+ Q +
Sbjct: 210 MVSGVNLPAAQLQIAMGIPMHRISDIRTLYGMNPHSAS----EIDFEFK-TQDATKKQRR 264
Query: 81 PS 82
P
Sbjct: 265 PI 266
>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium
lapideum [TaxId: 32060]}
Length = 168
Score = 24.5 bits (53), Expect = 5.8
Identities = 6/46 (13%), Positives = 13/46 (28%)
Query: 108 GSIIRCMRRLEEVLRQLVQASRNIGNTLLEEKFNEAIKTVKRDIFL 153
G+ ++ E L L + L + D+ +
Sbjct: 55 GAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLI 100
>d2ddha2 a.29.3.2 (A:475-655) Peroxisomal acyl-CoA oxidase-II,
domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 181
Score = 24.0 bits (52), Expect = 8.9
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 119 EVLRQLVQASRNIGNTLLEEKFNEAIKTVKRDIFLEILENL 159
LV+AS + ++ + F++ + ++ +L NL
Sbjct: 44 LTSVDLVRASEAHCHYVVVKVFSDKLPKIQDKAVQAVLRNL 84
>d1nzaa_ d.58.5.2 (A:) Cut A1 {Thermus thermophilus [TaxId: 274]}
Length = 103
Score = 23.2 bits (50), Expect = 9.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 43 ETVILTINDKLELARHIARISIESKL 68
E V+L E+AR IA+ +E +L
Sbjct: 2 EEVVLITVPSEEVARTIAKALVEERL 27
>d1t71a_ d.159.1.9 (A:) Hypothetical protein MPN349 {Mycoplasma
pneumoniae [TaxId: 2104]}
Length = 281
Score = 24.1 bits (52), Expect = 9.5
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 45 VILTINDKLELARHIARISIESKLDLDEDSYVNQ 78
V ++ + I ++ D+ Y+ Q
Sbjct: 246 VFFEVDVNTKKVIKTEAI----RIVEDDPRYLKQ 275
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.379
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 583,603
Number of extensions: 25944
Number of successful extensions: 92
Number of sequences better than 10.0: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 22
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.9 bits)