BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy6288
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 1a (Hdhd1a)
Length = 250
Score = 169 bits (427), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/136 (61%), Positives = 99/136 (72%), Gaps = 1/136 (0%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA +LI HL KH IPFA+ATSS SF++KTSRHK+ LF H+VLG DPEV+ GKP P
Sbjct: 116 GAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGD-DPEVQHGKPDP 174
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
D+FL AKRF P KCLVFEDAPNGV A AAGM VMVPD + + T A LVLN
Sbjct: 175 DIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLN 234
Query: 149 SLEEFKPELYGLPPFE 164
SL++F+PEL+GLP +E
Sbjct: 235 SLQDFQPELFGLPSYE 250
Score = 29.6 bits (65), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 12/13 (92%), Positives = 13/13 (100%)
Query: 10 VTHVIFDMDGLLL 22
VTH+IFDMDGLLL
Sbjct: 30 VTHLIFDMDGLLL 42
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
G + + I A+ATS+ + L+ R D K F V G +VK GKP P
Sbjct: 88 GVREALEFVKSKRIKLALATSTPQRE-ALERLRRLDLEKYFDVXVFGD---QVKNGKPDP 143
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128
+++L+ +R + P K +VFED+ +GV AK+AG+ +
Sbjct: 144 EIYLLVLERLN--VVPEKVVVFEDSKSGVEAAKSAGIERI 181
>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
pdb|3NAS|B Chain B, The Crystal Structure Of Beta-Phosphoglucomutase From
Bacillus Subtilis
Length = 233
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPE-VKQGKPA 87
G RL+ L NI +A+SS K R + FH +V DP + +GKP
Sbjct: 96 GIGRLLCQLKNENIKIGLASSSRNAP---KILRRLAIIDDFHAIV----DPTTLAKGKPD 148
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV--PDPTVPKHRTEAADL 145
PD+FL AA D P+ C EDA G+ K+AG V V P + ADL
Sbjct: 149 PDIFLTAAAXLD--VSPADCAAIEDAEAGISAIKSAGXFAVGVGQGQPXL------GADL 200
Query: 146 VLNSLEEFKPEL 157
V+ + EL
Sbjct: 201 VVRQTSDLTLEL 212
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 31 LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDV 90
L+++N + + +A+SS K ++ + ++ L+ F +VL E K+ KP P++
Sbjct: 95 LKVLNEVKSQGLEIGLASSSVKA--DIFRALEENRLQGFFDIVLSG--EEFKESKPNPEI 150
Query: 91 FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSL 150
+L A K+ + Q S+ L+ ED+ G+ AA + + D ++ AA +L+SL
Sbjct: 151 YLTALKQLN--VQASRALIIEDSEKGIAAGVAADVEVWAIRDNEFGXDQS-AAKGLLDSL 207
>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|C Chain C, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|D Chain D, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|E Chain E, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
pdb|3S6J|F Chain F, The Crystal Structure Of A Hydrolase From Pseudomonas
Syringae
Length = 233
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA+ L+ L K N+ + IATS ++ + LKL + + +V GKP P
Sbjct: 95 GAVELLETLDKENLKWCIATSGGIDTATINLK----ALKLDINKINIVTRDDVSYGKPDP 150
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAK 121
D+FL AAK+ +CLV DA L A+
Sbjct: 151 DLFLAAAKKI--GAPIDECLVIGDAIWDXLAAR 181
>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
pdb|4GIB|B Chain B, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase
(Pgmb) From Clostridium Difficile
Length = 250
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 16/106 (15%)
Query: 59 TSRHKDTLKLFHHVVLGSADP--------EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVF 110
+S K+ + + +H LG +D + K KP P++FL++AK + PQ C+
Sbjct: 138 SSASKNAINVLNH--LGISDKFDFIADAGKCKNNKPHPEIFLMSAKGLNVNPQ--NCIGI 193
Query: 111 EDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPE 156
EDA G+ +A M V V + + A+LV++S + K E
Sbjct: 194 EDASAGIDAINSANMFSVGVGNY----ENLKKANLVVDSTNQLKFE 235
>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus
Length = 247
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 80 EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR 139
+VK GKP P+ +L A K+ KP ++ LV E+AP GV AAG+ + V T P H
Sbjct: 160 DVKYGKPNPEPYLXALKKGGFKP--NEALVIENAPLGVQAGVAAGIFTIAV--NTGPLHD 215
Query: 140 ----TEAADLVLNSLEEF 153
E A+L+ +S +F
Sbjct: 216 NVLLNEGANLLFHSXPDF 233
>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
pdb|1LVH|B Chain B, The Structure Of Phosphorylated Beta-phosphoglucomutase
From Lactoccocus Lactis To 2.3 Angstrom Resolution
Length = 221
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPA 87
G L+L+ L + I A+A++S F L + L + + ADP EV KPA
Sbjct: 95 GILQLLKDLRSNKIKIALASASKNGPFLL----ERMNLTGYFDAI---ADPAEVAASKPA 147
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
PD+F+ AA PS+ + ED+ G+ K +G + V P
Sbjct: 148 PDIFIAAAHAV--GVAPSESIGLEDSQAGIQAIKDSGALPIGVGRP 191
>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 6-Phosphate
pdb|1O08|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An
Enzyme Catalyzed Phosphoryl Transfer Reaction Observed
On Cocrystallization With Glucose 1-Phosphate
pdb|1Z4N|A Chain A, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4N|B Chain B, Structure Of Beta-phosphoglucomutase With Inhibitor Bound
Alpha-galactose 1-phosphate Cocrystallized With Fluoride
pdb|1Z4O|A Chain A, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1Z4O|B Chain B, Structure Of Beta-Phosphoglucomutase With Inhibitor Bound
Alpha-Galactose 1-Phosphate
pdb|1ZOL|A Chain A, Native Beta-Pgm
pdb|2WF5|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Trifluoromagnesate
pdb|2WHE|A Chain A, Structure Of Native Beta-Phosphoglucomutase In An Open
Conformation Without Bound Ligands.
pdb|2WF7|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphonate And Aluminium Tetrafluoride
pdb|2WF6|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phospahte And Aluminium Tetrafluoride
pdb|2WF8|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, Glucose-1-Phosphate And Beryllium
Trifluoride
pdb|2WF9|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Glucose- 6-Phosphate, And Beryllium Trifluoride, Crystal
Form 2
pdb|2WFA|A Chain A, Structure Of Beta-Phosphoglucomutase Inhibited With
Beryllium Trifluoride, In An Open Conformation
Length = 221
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPA 87
G L+L+ L + I A+A++S F L + L + + ADP EV KPA
Sbjct: 95 GILQLLKDLRSNKIKIALASASKNGPFLL----ERMNLTGYFDAI---ADPAEVAASKPA 147
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
PD+F+ AA PS+ + ED+ G+ K +G + V P
Sbjct: 148 PDIFIAAAHAV--GVAPSESIGLEDSQAGIQAIKDSGALPIGVGRP 191
>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying
Discrimination Between Substrate And Solvent In Beta-
Phosphoglucomutase Catalysis
Length = 221
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPA 87
G L+L+ L + I A+A++S F L + L + + ADP EV KPA
Sbjct: 95 GILQLLKDLRSNKIKIALASASKNGPFLL----ERMNLTGYFDAI---ADPAEVAASKPA 147
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
PD+F+ AA PS+ + ED+ G+ K +G + V P
Sbjct: 148 PDIFIAAAHAV--GVAPSESIGLEDSQAGIQAIKDSGALPIGVGRP 191
>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Phosphate And Sodium
pdb|4EEL|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Citrate And Sodium
pdb|4EEN|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From
Deinococcus Radiodurans R1 (Target Efi-501256) With
Bound Magnesium
Length = 259
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV--KQGKP 86
GA + L +PFAI ++S + LK T H+ DP +GKP
Sbjct: 114 GAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLTELAGEHIY----DPSWVGGRGKP 169
Query: 87 APDVFLVAAKRFDEKPQPSKCLVFEDA 113
PD++ AA++ P+ +C+V ED+
Sbjct: 170 HPDLYTFAAQQLGILPE--RCVVIEDS 194
>pdb|1ZJJ|A Chain A, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
pdb|1ZJJ|B Chain B, Crystal Structure Of Hypothetical Protein Ph1952 From
Pyrococcus Horikoshii Ot3
Length = 263
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 13 VIFDMDGLLLGYNLAIGALR-LINHLHKHNIPFAIATSSAKESFEL 57
+IFDMDG+L N AI +R LI L + IPFA T+++ ++ E+
Sbjct: 4 IIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEM 49
>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like
Protein Of Unknown Function Atu0790 From Agrobacterium
Tumefaciens Str. C58
Length = 229
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP--TVPKHRTEA 142
KP PD+FL A +F P + +V ED+ +G+ GA+AAG + T P H
Sbjct: 143 KPKPDIFLHGAAQF--GVSPDRVVVVEDSVHGIHGARAAGXRVIGFTGASHTYPSHADRL 200
Query: 143 AD 144
D
Sbjct: 201 TD 202
>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12
pdb|1TE2|B Chain B, Putative Phosphatase Ynic From Escherichia Coli K12
Length = 226
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAA 143
KP P V+L A + P C+ ED+ NG + +KAA ++VP P R A
Sbjct: 150 KPHPQVYLDCAAKLGVDPL--TCVALEDSVNGXIASKAARXRSIVVPAPEAQNDPRFVLA 207
Query: 144 DLVLNSLEEF 153
++ L+SL E
Sbjct: 208 NVKLSSLTEL 217
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK-LFHHVVLGSADPEVKQGKPA 87
G L ++ L A+ATS + K +R L L + + + D V++GKP
Sbjct: 108 GVLEGLDRLSAAGFRLAMATSKVE-----KAARAIAELTGLDTRLTVIAGDDSVERGKPH 162
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDA-PNGVLGAKAAGMSCVMV 130
PD+ L A+ P+ +C+V D P+ +G +AAGM+ + V
Sbjct: 163 PDMALHVARGLGIPPE--RCVVIGDGVPDAEMG-RAAGMTVIGV 203
>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From
Escherichia Coli, Target Efi-501172, With Bound Mg, Open
Lid
Length = 243
Score = 35.0 bits (79), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 80 EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
++K KP P++FL A PQ C+ EDA G+ A+GM V +
Sbjct: 144 QLKNSKPDPEIFLAACAGLGVPPQA--CIGIEDAQAGIDAINASGMRSVGI 192
>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From
Ehrlichia Chaffeensis At 1.9a Resolution
Length = 231
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 7/97 (7%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA+ L++ L ++NI AI ++ E L++ H L + ++GS D KP+P
Sbjct: 107 GAIELLDTLKENNITMAIVSNKNGE--RLRSEIHHKNLTHYFDSIIGSGDTGTI--KPSP 162
Query: 89 DVFLVAAKRFDEKPQPSKCLVF-EDAPNGVLGAKAAG 124
+ L A + +PSK + F D+ + + A AG
Sbjct: 163 EPVLAALTNIN--IEPSKEVFFIGDSISDIQSAIEAG 197
>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, An Open Cap Conformation
pdb|3QU2|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QU2|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, A Closed Cap Conformation
pdb|3QX7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Phosphate, A Closed Cap
Conformation
pdb|3QXG|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
pdb|3QXG|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron Complexed With Calcium, A Closed Cap
Conformation
Length = 243
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA L+ + + + T S + S L+ H + +FH ++ +A +VK GKP P
Sbjct: 113 GAWELLQKVKSEGLTPMVVTGSGQLSL-LERLEH-NFPGMFHKELMVTAF-DVKYGKPNP 169
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
+ +L+A K+ K + +V E+AP GV AG+ + V
Sbjct: 170 EPYLMALKKGGLK--ADEAVVIENAPLGVEAGHKAGIFTIAV 209
>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asp Mutant Complexed With
Sulfate, A Closed Cap Conformation
Length = 243
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA L+ + + + T S + S L+ H + +FH ++ +A +VK GKP P
Sbjct: 113 GAWELLQKVKSEGLTPMVVTGSGQLSL-LERLEH-NFPGMFHKELMVTAF-DVKYGKPNP 169
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
+ +L+A K+ K + +V E+AP GV AG+ + V
Sbjct: 170 EPYLMALKKGGLK--ADEAVVIENAPLGVEAGHKAGIFTIAV 209
>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QYP|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium
And Phosphate
pdb|3QUC|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47asn Mutant Complexed With Sulfate
Length = 243
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA L+ + + + T S + S L+ H + +FH ++ +A +VK GKP P
Sbjct: 113 GAWELLQKVKSEGLTPMVVTGSGQLSL-LERLEH-NFPGMFHKELMVTAF-DVKYGKPNP 169
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
+ +L+A K+ K + +V E+AP GV AG+ + V
Sbjct: 170 EPYLMALKKGGLK--ADEAVVIENAPLGVEAGHKAGIFTIAV 209
>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
pdb|3QU5|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp11asn Mutant
Length = 243
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA L+ + + + T S + S L+ H + +FH ++ +A +VK GKP P
Sbjct: 113 GAWELLQKVKSEGLTPMVVTGSGQLSL-LERLEH-NFPGMFHKELMVTAF-DVKYGKPNP 169
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
+ +L+A K+ K + +V E+AP GV AG+ + V
Sbjct: 170 EPYLMALKKGGLK--ADEAVVIENAPLGVEAGHKAGIFTIAV 209
>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant, An Open Cap
Conformation
pdb|3QU7|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU7|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With Calcium
And Phosphate
pdb|3QU9|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13asn Mutant Complexed With
Magnesium And Tartrate
Length = 243
Score = 34.3 bits (77), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA L+ + + + T S + S L+ H + +FH ++ +A +VK GKP P
Sbjct: 113 GAWELLQKVKSEGLTPMVVTGSGQLSL-LERLEH-NFPGMFHKELMVTAF-DVKYGKPNP 169
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
+ +L+A K+ K + +V E+AP GV AG+ + V
Sbjct: 170 EPYLMALKKGGLK--ADEAVVIENAPLGVEAGHKAGIFTIAV 209
>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate
Length = 243
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA L+ + + + T S + S L+ H + +FH ++ +A +VK GKP P
Sbjct: 113 GAWELLQKVKSEGLTPMVVTGSGQLSL-LERLEH-NFPGMFHKELMVTAF-DVKYGKPNP 169
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
+ +L+A K+ K + +V E+AP GV AG+ + V
Sbjct: 170 EPYLMALKKGGLK--ADEAVVIENAPLGVEAGHKAGIFTIAV 209
>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|B Chain B, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|C Chain C, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|D Chain D, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|E Chain E, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|F Chain F, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|G Chain G, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
pdb|3QU4|H Chain H, Crystal Structure Of Pyrophosphatase From Bacteroides
Thetaiotaomicron, Asp13ala Mutant
Length = 243
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA L+ + + + T S + S L+ H + +FH ++ +A +VK GKP P
Sbjct: 113 GAWELLQKVKSEGLTPMVVTGSGQLSL-LERLEH-NFPGMFHKELMVTAF-DVKYGKPNP 169
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
+ +L+A K+ K + +V E+AP GV AG+ + V
Sbjct: 170 EPYLMALKKGGLK--ADEAVVIENAPLGVEAGHKAGIFTIAV 209
>pdb|2QLT|A Chain A, Crystal Structure Of An Isoform Of
Dl-Glycerol-3-Phosphatase, Rhr2p, From Saccharomyces
Cerevisiae
Length = 275
Score = 33.1 bits (74), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 15/92 (16%)
Query: 29 GALRLINHLHKHNIP---FAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGK 85
GA++L N L+ +P +A+ATS ++ + D LK+ +A+ +VKQGK
Sbjct: 118 GAVKLCNALNA--LPKEKWAVATSGTRDM----AKKWFDILKIKRPEYFITAN-DVKQGK 170
Query: 86 PAPDVFLVAAKRF-----DEKPQPSKCLVFED 112
P P+ +L ++ P SK +VFED
Sbjct: 171 PHPEPYLKGRNGLGFPINEQDPSKSKVVVFED 202
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 68 LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSC 127
F HV++ + VK KP P +F A K F+ KP+ + +V + + + GAK GM
Sbjct: 136 FFEHVIISDFEG-VK--KPHPKIFKKALKAFNVKPEEA-LMVGDRLYSDIYGAKRVGMKT 191
Query: 128 VM 129
V
Sbjct: 192 VW 193
>pdb|2XIG|A Chain A, The Structure Of The Helicobacter Pylori Ferric Uptake
Regulator Fur Reveals Three Functional Metal Binding
Sites
pdb|2XIG|B Chain B, The Structure Of The Helicobacter Pylori Ferric Uptake
Regulator Fur Reveals Three Functional Metal Binding
Sites
pdb|2XIG|C Chain C, The Structure Of The Helicobacter Pylori Ferric Uptake
Regulator Fur Reveals Three Functional Metal Binding
Sites
pdb|2XIG|D Chain D, The Structure Of The Helicobacter Pylori Ferric Uptake
Regulator Fur Reveals Three Functional Metal Binding
Sites
Length = 150
Score = 30.8 bits (68), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 10 VTHVIFDMDGLLLGYNLAIGAL-RLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL 68
+TH I D N +I ++ R++N L K N + TS + +E+ H D +
Sbjct: 48 ITHSIRQKDK-----NTSISSVYRILNFLEKENFISVLETSKSGRRYEIAAKEHHDHIIC 102
Query: 69 FH-HVVLGSADPEVK 82
H ++ ADPE++
Sbjct: 103 LHCGKIIEFADPEIE 117
>pdb|3K4P|A Chain A, Aspergillus Niger Phytase
pdb|3K4P|B Chain B, Aspergillus Niger Phytase
pdb|3K4Q|A Chain A, Aspergillus Niger Phytase In Complex With Myo-Inositol
Hexakis Sulfate
pdb|3K4Q|B Chain B, Aspergillus Niger Phytase In Complex With Myo-Inositol
Hexakis Sulfate
Length = 444
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQG 84
N I + L ++ +PF ++ S++ + K ++ F L DP + G
Sbjct: 115 NSGIKFYQRYESLTRNIVPFIRSSGSSR-----VIASGKKFIEGFQSTKL--KDPRAQPG 167
Query: 85 KPAP--DVFLVAAKRFDEKPQPSKCLVFEDA 113
+ +P DV + A + P C VFED+
Sbjct: 168 QSSPKIDVVISEASSSNNTLDPGTCTVFEDS 198
>pdb|1IHP|A Chain A, Structure Of Phosphomonoesterase
Length = 438
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQG 84
N I + L ++ +PF ++ S++ + K ++ F L DP + G
Sbjct: 109 NSGIKFYQRYESLTRNIVPFIRSSGSSR-----VIASGKKFIEGFQSTKL--KDPRAQPG 161
Query: 85 KPAP--DVFLVAAKRFDEKPQPSKCLVFEDA 113
+ +P DV + A + P C VFED+
Sbjct: 162 QSSPKIDVVISEASSSNNTLDPGTCTVFEDS 192
>pdb|2RFQ|A Chain A, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|B Chain B, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|C Chain C, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
pdb|2RFQ|D Chain D, Crystal Structure Of 3-Hsa Hydroxylase From Rhodococcus
Sp. Rha1
Length = 394
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 18/94 (19%)
Query: 73 VLGSADPEVKQGKPAPDV-FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVP 131
VLG P +K G+P V FL+ P + +D N V+G + G + V+V
Sbjct: 152 VLGG--PVIKDGRPVDFVSFLI----------PREDYRIDDVWN-VVGLRGTGSNTVVVE 198
Query: 132 DPTVPKHRT----EAADLVLNSLEEFKPELYGLP 161
D VP HR ++L LE +Y P
Sbjct: 199 DVFVPTHRVLSFKAXSNLTAPGLERNTAPVYKXP 232
>pdb|3TAI|A Chain A, Crystal Structure Of Nura
pdb|3TAI|B Chain B, Crystal Structure Of Nura
pdb|3TAL|A Chain A, Crystal Structure Of Nura With Manganese
pdb|3TAL|B Chain B, Crystal Structure Of Nura With Manganese
Length = 471
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 121 KAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY 158
KA G S ++P + R ++ D +L L+E K ELY
Sbjct: 243 KALGYSPRVIPIEVLESSRGKSVDELLQELDEEKVELY 280
>pdb|1Q85|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q85|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex, Se-Met)
pdb|1Q8A|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
pdb|1Q8A|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+:l-Hcy Complex, Se-Met)
Length = 566
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGV-----LGAKAAGMSCVMVPDPTVP 136
DVFL+A FDEK + L D N L A G++C + P+ +P
Sbjct: 167 DVFLIAHXTFDEK---GRSLTGTDPANFAITFDELDIDALGINCSLGPEEILP 216
>pdb|3TAZ|A Chain A, Crystal Structure Of Nura Bound To Damp And Manganese
pdb|3TAZ|B Chain B, Crystal Structure Of Nura Bound To Damp And Manganese
Length = 471
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 121 KAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY 158
KA G S ++P + R ++ D +L L+E K ELY
Sbjct: 243 KALGYSPRVIPIEVLESSRGKSVDELLQELDEEKVELY 280
>pdb|1Q7M|A Chain A, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7M|B Chain B, Cobalamin-Dependent Methionine Synthase (Meth) From
Thermotoga Maritima (Oxidized, Monoclinic)
pdb|1Q7Q|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Q|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From T.
Maritima (Oxidized, Orthorhombic)
pdb|1Q7Z|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q7Z|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima (Cd2+ Complex)
pdb|1Q8J|A Chain A, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|1Q8J|B Chain B, Cobalamin-dependent Methionine Synthase (1-566) From
Thermotoga Maritima (cd2+, Hcy, Methyltetrahydrofolate
Complex)
pdb|3BOF|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And Homocysteine
pdb|3BOF|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+ And Homocysteine
pdb|3BOL|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
pdb|3BOL|B Chain B, Cobalamin-Dependent Methionine Synthase (1-566) From
Thermotoga Maritima Complexed With Zn2+
Length = 566
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGV-----LGAKAAGMSCVMVPDPTVP 136
DVFL+A FDEK + L D N L A G++C + P+ +P
Sbjct: 167 DVFLIAHMTFDEK---GRSLTGTDPANFAITFDELDIDALGINCSLGPEEILP 216
>pdb|3HWO|A Chain A, Crystal Structure Of Escherichia Coli
Enterobactin-Specific Isochorismate Synthase Entc In
Complex With Isochorismate
pdb|3HWO|B Chain B, Crystal Structure Of Escherichia Coli
Enterobactin-Specific Isochorismate Synthase Entc In
Complex With Isochorismate
Length = 394
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 122 AAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYG 159
A ++C++ P P + +AA V+ LE F EL+G
Sbjct: 294 ALTLACLLHPTPALSGFPHQAATQVIAELEPFDRELFG 331
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,343,126
Number of Sequences: 62578
Number of extensions: 208310
Number of successful extensions: 437
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 41
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)