Query psy6288
Match_columns 166
No_of_seqs 106 out of 1664
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 22:36:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy6288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/6288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02940 riboflavin kinase 99.9 1.9E-24 4.2E-29 170.3 15.8 140 21-165 89-228 (382)
2 COG0546 Gph Predicted phosphat 99.9 2.1E-24 4.6E-29 158.7 15.0 131 23-159 87-219 (220)
3 PRK13288 pyrophosphatase PpaX; 99.9 2E-24 4.2E-29 158.0 14.7 132 23-160 80-213 (214)
4 PLN02770 haloacid dehalogenase 99.9 3E-24 6.5E-29 160.5 14.9 125 23-153 106-231 (248)
5 TIGR01449 PGP_bact 2-phosphogl 99.9 5.6E-24 1.2E-28 155.2 15.7 129 23-157 83-213 (213)
6 TIGR01454 AHBA_synth_RP 3-amin 99.9 3.4E-24 7.3E-29 155.8 14.2 131 22-158 72-204 (205)
7 TIGR01422 phosphonatase phosph 99.9 5.3E-24 1.1E-28 159.5 14.5 130 22-157 96-252 (253)
8 PLN03243 haloacid dehalogenase 99.9 1.7E-23 3.6E-28 157.2 15.0 130 23-159 107-236 (260)
9 PRK13226 phosphoglycolate phos 99.9 1.9E-23 4.1E-28 154.4 14.7 130 23-158 93-225 (229)
10 PLN02811 hydrolase 99.9 4.7E-23 1E-27 151.5 15.8 143 22-165 75-218 (220)
11 TIGR02253 CTE7 HAD superfamily 99.9 2.4E-23 5.3E-28 152.7 14.1 125 23-153 92-220 (221)
12 TIGR03351 PhnX-like phosphonat 99.9 5E-23 1.1E-27 151.1 14.8 129 23-157 85-219 (220)
13 PLN02575 haloacid dehalogenase 99.9 6.9E-23 1.5E-27 159.8 15.6 128 23-157 214-341 (381)
14 PRK10826 2-deoxyglucose-6-phos 99.9 7.6E-23 1.6E-27 150.5 15.0 129 22-156 89-218 (222)
15 PRK13478 phosphonoacetaldehyde 99.9 6.4E-23 1.4E-27 154.8 14.8 130 23-158 99-255 (267)
16 PRK09449 dUMP phosphatase; Pro 99.9 8.9E-23 1.9E-27 150.1 13.4 129 23-158 93-223 (224)
17 PRK14988 GMP/IMP nucleotidase; 99.9 1.1E-22 2.4E-27 150.0 12.4 130 22-157 90-221 (224)
18 TIGR02254 YjjG/YfnB HAD superf 99.9 1.7E-22 3.6E-27 148.4 12.9 128 23-157 95-224 (224)
19 PRK13223 phosphoglycolate phos 99.9 4.4E-22 9.5E-27 150.6 15.5 130 23-158 99-230 (272)
20 PRK06769 hypothetical protein; 99.9 9.5E-23 2.1E-27 144.7 10.8 130 23-158 26-172 (173)
21 PRK11587 putative phosphatase; 99.9 3.2E-22 6.9E-27 146.8 13.9 127 22-156 80-206 (218)
22 TIGR01428 HAD_type_II 2-haloal 99.9 3.4E-22 7.3E-27 144.5 13.6 107 22-134 89-195 (198)
23 PRK13222 phosphoglycolate phos 99.9 1.2E-21 2.7E-26 144.0 15.7 130 23-158 91-222 (226)
24 PRK13225 phosphoglycolate phos 99.9 7.9E-22 1.7E-26 149.1 13.9 135 17-160 134-270 (273)
25 PRK08942 D,D-heptose 1,7-bisph 99.9 1.3E-21 2.8E-26 139.8 12.5 137 20-161 24-180 (181)
26 TIGR01990 bPGM beta-phosphoglu 99.9 1.9E-21 4.2E-26 138.9 13.3 101 23-131 85-185 (185)
27 TIGR00213 GmhB_yaeD D,D-heptos 99.9 1.6E-21 3.5E-26 138.8 12.6 127 23-154 24-175 (176)
28 PRK10748 flavin mononucleotide 99.9 3.7E-21 8E-26 143.0 14.3 124 22-157 110-238 (238)
29 PRK10563 6-phosphogluconate ph 99.9 2.3E-21 5E-26 142.4 13.1 128 22-158 85-213 (221)
30 PLN02779 haloacid dehalogenase 99.9 6.3E-21 1.4E-25 145.2 14.3 129 24-158 143-273 (286)
31 COG1011 Predicted hydrolase (H 99.9 3.7E-21 7.9E-26 141.7 12.5 130 23-159 97-228 (229)
32 PF13419 HAD_2: Haloacid dehal 99.9 9E-21 1.9E-25 133.4 13.5 103 22-130 74-176 (176)
33 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 1.2E-20 2.7E-25 134.3 14.3 100 24-130 84-183 (183)
34 PRK09456 ?-D-glucose-1-phospha 99.9 5.2E-21 1.1E-25 138.6 11.7 106 24-134 83-188 (199)
35 TIGR02009 PGMB-YQAB-SF beta-ph 99.8 3.5E-20 7.5E-25 132.4 13.2 100 23-130 86-185 (185)
36 PRK06698 bifunctional 5'-methy 99.8 5.3E-20 1.1E-24 148.5 14.8 129 23-160 328-456 (459)
37 TIGR02252 DREG-2 REG-2-like, H 99.8 3.2E-20 6.9E-25 134.6 12.2 99 24-129 104-203 (203)
38 COG0637 Predicted phosphatase/ 99.8 1.1E-19 2.3E-24 133.8 12.5 132 20-157 81-216 (221)
39 TIGR02247 HAD-1A3-hyp Epoxide 99.8 5E-20 1.1E-24 134.4 10.6 105 23-133 92-198 (211)
40 TIGR01261 hisB_Nterm histidino 99.8 1.2E-19 2.6E-24 127.2 11.7 106 23-136 27-152 (161)
41 TIGR01691 enolase-ppase 2,3-di 99.8 1.9E-19 4E-24 132.0 13.2 122 23-152 93-219 (220)
42 PLN02919 haloacid dehalogenase 99.8 3.1E-19 6.7E-24 155.4 15.5 126 24-155 160-287 (1057)
43 TIGR01656 Histidinol-ppas hist 99.8 8.5E-20 1.8E-24 126.3 9.6 104 23-133 25-147 (147)
44 PRK10725 fructose-1-P/6-phosph 99.8 4.5E-19 9.8E-24 127.0 13.3 101 23-131 86-186 (188)
45 TIGR01993 Pyr-5-nucltdase pyri 99.8 4.7E-19 1E-23 126.7 10.7 99 23-130 82-184 (184)
46 TIGR01685 MDP-1 magnesium-depe 99.8 3.7E-19 8.1E-24 125.7 9.1 107 23-135 43-161 (174)
47 KOG3085|consensus 99.8 7.7E-19 1.7E-23 128.6 8.1 110 22-138 110-220 (237)
48 TIGR01549 HAD-SF-IA-v1 haloaci 99.8 3E-17 6.5E-22 114.1 12.6 94 22-124 61-154 (154)
49 TIGR01548 HAD-SF-IA-hyp1 haloa 99.7 3.5E-17 7.6E-22 118.3 13.0 92 25-123 106-197 (197)
50 KOG2914|consensus 99.7 3.1E-17 6.8E-22 119.6 12.5 144 9-155 76-220 (222)
51 TIGR01662 HAD-SF-IIIA HAD-supe 99.7 1.6E-17 3.4E-22 112.8 10.1 98 24-131 24-131 (132)
52 TIGR00338 serB phosphoserine p 99.7 3.7E-17 8E-22 119.9 12.0 133 18-157 78-219 (219)
53 TIGR01668 YqeG_hyp_ppase HAD s 99.7 5.5E-17 1.2E-21 114.8 11.4 101 24-138 42-143 (170)
54 PHA02597 30.2 hypothetical pro 99.7 1.3E-16 2.8E-21 115.3 13.5 120 22-155 71-196 (197)
55 TIGR01452 PGP_euk phosphoglyco 99.7 5.1E-18 1.1E-22 128.9 5.4 126 25-153 143-279 (279)
56 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.7 2.4E-17 5.3E-22 123.8 6.6 131 25-158 120-255 (257)
57 PRK05446 imidazole glycerol-ph 99.7 2.8E-16 6.1E-21 122.1 12.5 104 22-133 27-150 (354)
58 TIGR01664 DNA-3'-Pase DNA 3'-p 99.7 1.6E-16 3.4E-21 112.0 10.0 98 26-129 43-160 (166)
59 COG0647 NagD Predicted sugar p 99.7 2.2E-16 4.7E-21 118.3 9.4 154 5-160 3-268 (269)
60 PHA02530 pseT polynucleotide k 99.7 4E-16 8.6E-21 119.6 10.2 107 24-133 186-298 (300)
61 TIGR01493 HAD-SF-IA-v2 Haloaci 99.7 8.7E-17 1.9E-21 114.0 5.7 89 22-123 87-175 (175)
62 PF13242 Hydrolase_like: HAD-h 99.7 3.8E-16 8.2E-21 96.0 6.8 69 83-153 2-75 (75)
63 PLN02954 phosphoserine phospha 99.7 1.8E-15 3.9E-20 111.2 11.5 129 24-157 83-223 (224)
64 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.7 1.6E-15 3.5E-20 109.5 10.8 110 18-133 73-192 (201)
65 COG0241 HisB Histidinol phosph 99.6 2.4E-15 5.2E-20 106.2 10.4 127 23-154 29-173 (181)
66 cd01427 HAD_like Haloacid deha 99.6 2.7E-15 5.9E-20 101.0 10.3 101 24-130 23-139 (139)
67 TIGR01672 AphA HAD superfamily 99.6 4.6E-15 1E-19 109.7 11.7 101 23-136 112-216 (237)
68 KOG3109|consensus 99.6 5.1E-15 1.1E-19 105.8 11.4 107 23-134 98-208 (244)
69 COG2179 Predicted hydrolase of 99.6 6.7E-15 1.5E-19 101.2 9.7 95 23-132 44-139 (175)
70 smart00577 CPDc catalytic doma 99.6 1.2E-15 2.7E-20 105.6 6.1 96 24-129 44-140 (148)
71 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.6 7.9E-15 1.7E-19 109.7 10.9 71 81-153 174-249 (249)
72 PRK09552 mtnX 2-hydroxy-3-keto 99.6 3.9E-15 8.5E-20 109.3 7.2 128 22-159 71-214 (219)
73 TIGR01681 HAD-SF-IIIC HAD-supe 99.6 7E-15 1.5E-19 99.4 7.8 90 25-122 29-126 (128)
74 PRK10444 UMP phosphatase; Prov 99.6 2E-14 4.3E-19 107.5 10.6 70 82-153 171-245 (248)
75 PRK11009 aphA acid phosphatase 99.6 6.1E-14 1.3E-18 103.7 12.9 99 23-135 112-215 (237)
76 PRK11133 serB phosphoserine ph 99.6 3.5E-14 7.6E-19 109.6 11.6 130 20-156 176-314 (322)
77 PRK13582 thrH phosphoserine ph 99.6 2.5E-14 5.5E-19 103.8 10.0 134 18-158 61-196 (205)
78 PLN02645 phosphoglycolate phos 99.6 5.1E-15 1.1E-19 114.1 6.0 128 29-158 174-308 (311)
79 TIGR01670 YrbI-phosphatas 3-de 99.5 6.1E-14 1.3E-18 97.7 7.2 100 33-150 36-135 (154)
80 KOG2882|consensus 99.5 1.6E-13 3.4E-18 102.7 8.5 76 81-158 220-304 (306)
81 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.5 1.1E-13 2.3E-18 103.2 6.5 99 27-132 140-242 (242)
82 TIGR03333 salvage_mtnX 2-hydro 99.5 2.5E-13 5.4E-18 99.5 8.0 128 23-159 68-210 (214)
83 PF00702 Hydrolase: haloacid d 99.4 4.4E-13 9.5E-18 97.4 8.6 91 23-124 125-215 (215)
84 TIGR01489 DKMTPPase-SF 2,3-dik 99.4 8.7E-13 1.9E-17 94.1 9.4 103 18-126 65-184 (188)
85 TIGR02726 phenyl_P_delta pheny 99.4 7.4E-13 1.6E-17 93.4 8.4 111 33-161 42-158 (169)
86 PRK09484 3-deoxy-D-manno-octul 99.4 6.4E-13 1.4E-17 95.1 7.8 109 32-158 55-169 (183)
87 KOG3040|consensus 99.4 1.4E-12 3E-17 92.8 8.2 77 81-159 177-258 (262)
88 COG4229 Predicted enolase-phos 99.4 5.5E-12 1.2E-16 88.0 10.7 122 23-151 101-224 (229)
89 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.4 7.5E-12 1.6E-16 90.6 12.0 104 24-130 86-197 (202)
90 TIGR02137 HSK-PSP phosphoserin 99.4 5.2E-12 1.1E-16 91.8 10.2 131 18-158 61-196 (203)
91 TIGR01686 FkbH FkbH-like domai 99.4 3.4E-12 7.3E-17 98.9 9.8 91 25-126 31-125 (320)
92 TIGR01544 HAD-SF-IE haloacid d 99.4 1.4E-11 3.1E-16 92.8 12.5 97 23-123 119-230 (277)
93 TIGR01663 PNK-3'Pase polynucle 99.4 3.1E-12 6.7E-17 104.2 9.2 94 26-125 198-305 (526)
94 TIGR02244 HAD-IG-Ncltidse HAD 99.4 1.1E-11 2.3E-16 96.1 11.6 108 24-133 183-325 (343)
95 PTZ00445 p36-lilke protein; Pr 99.3 5.2E-11 1.1E-15 85.6 10.3 106 26-133 76-207 (219)
96 TIGR01488 HAD-SF-IB Haloacid D 99.3 4.3E-11 9.2E-16 84.7 9.1 99 22-123 70-177 (177)
97 TIGR01512 ATPase-IB2_Cd heavy 99.2 3.5E-11 7.5E-16 99.1 8.6 115 23-157 360-478 (536)
98 TIGR01525 ATPase-IB_hvy heavy 99.2 2.5E-11 5.5E-16 100.4 7.6 115 23-157 382-499 (556)
99 PF12689 Acid_PPase: Acid Phos 99.2 1.1E-10 2.4E-15 82.1 9.5 107 22-138 42-158 (169)
100 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.2 1.2E-11 2.5E-16 92.3 4.5 112 4-125 2-116 (242)
101 TIGR02251 HIF-SF_euk Dullard-l 99.2 1.7E-11 3.7E-16 86.1 3.2 98 24-131 41-139 (162)
102 PF08645 PNK3P: Polynucleotide 99.1 4.1E-10 8.9E-15 78.8 8.2 99 24-127 27-152 (159)
103 PRK08238 hypothetical protein; 99.1 6.5E-10 1.4E-14 90.2 10.4 98 24-134 71-168 (479)
104 COG0560 SerB Phosphoserine pho 99.1 1E-09 2.2E-14 80.3 9.6 111 20-133 71-189 (212)
105 TIGR01456 CECR5 HAD-superfamil 99.1 2.7E-10 6E-15 88.3 6.5 78 81-158 229-321 (321)
106 PF09419 PGP_phosphatase: Mito 99.0 2.6E-09 5.6E-14 75.0 9.7 108 13-134 44-167 (168)
107 TIGR01511 ATPase-IB1_Cu copper 99.0 1.4E-09 2.9E-14 90.2 9.6 114 23-157 403-518 (562)
108 TIGR01460 HAD-SF-IIA Haloacid 99.0 2.7E-10 5.8E-15 84.7 4.8 93 39-133 142-236 (236)
109 TIGR01522 ATPase-IIA2_Ca golgi 99.0 1.4E-09 3E-14 94.4 9.2 125 24-157 527-670 (884)
110 COG4087 Soluble P-type ATPase 98.9 1.5E-08 3.2E-13 67.3 9.7 124 23-162 28-151 (152)
111 PRK10671 copA copper exporting 98.9 1.2E-08 2.5E-13 88.3 10.2 116 23-158 648-765 (834)
112 PF06888 Put_Phosphatase: Puta 98.7 8E-08 1.7E-12 71.0 8.9 142 15-159 61-232 (234)
113 COG1778 Low specificity phosph 98.7 1.9E-08 4.1E-13 68.9 5.1 83 33-130 43-125 (170)
114 KOG1615|consensus 98.7 1.1E-07 2.5E-12 67.3 7.4 125 23-155 86-223 (227)
115 PLN02645 phosphoglycolate phos 98.6 1.2E-07 2.6E-12 73.3 7.7 109 6-129 24-136 (311)
116 PRK10530 pyridoxal phosphate ( 98.6 7.1E-08 1.5E-12 72.8 6.3 113 27-150 139-258 (272)
117 PRK11033 zntA zinc/cadmium/mer 98.6 3.7E-07 8E-12 78.1 10.1 113 23-157 566-680 (741)
118 KOG2630|consensus 98.6 8E-07 1.7E-11 64.6 9.6 120 23-154 121-249 (254)
119 COG4359 Uncharacterized conser 98.6 6E-07 1.3E-11 63.2 8.6 100 17-125 65-180 (220)
120 TIGR01533 lipo_e_P4 5'-nucleot 98.6 7.2E-07 1.6E-11 67.3 9.4 88 23-122 116-206 (266)
121 TIGR01116 ATPase-IIA1_Ca sarco 98.5 3.5E-07 7.7E-12 79.9 8.5 129 23-157 535-682 (917)
122 COG4996 Predicted phosphatase 98.5 4.3E-07 9.4E-12 60.5 6.3 93 22-122 38-134 (164)
123 PF05761 5_nucleotid: 5' nucle 98.5 1.5E-06 3.3E-11 69.9 9.5 108 25-134 183-327 (448)
124 TIGR01684 viral_ppase viral ph 98.4 6.8E-07 1.5E-11 67.8 6.8 75 13-91 129-208 (301)
125 PF12710 HAD: haloacid dehalog 98.4 7.9E-07 1.7E-11 63.5 6.4 88 28-121 92-192 (192)
126 PF13344 Hydrolase_6: Haloacid 98.3 5.3E-06 1.1E-10 53.6 8.2 94 15-125 3-100 (101)
127 PRK11590 hypothetical protein; 98.2 5.7E-05 1.2E-09 55.2 12.3 102 24-129 94-201 (211)
128 COG2217 ZntA Cation transport 98.2 4.3E-06 9.2E-11 70.9 6.9 87 23-126 535-621 (713)
129 TIGR01497 kdpB K+-transporting 98.2 9.1E-06 2E-10 68.6 8.6 89 24-129 445-533 (675)
130 PRK14010 potassium-transportin 98.2 1.4E-05 3.1E-10 67.5 9.4 89 23-128 439-527 (673)
131 PRK01158 phosphoglycolate phos 98.2 2.5E-05 5.5E-10 57.4 9.6 58 87-149 158-215 (230)
132 PRK01122 potassium-transportin 98.1 1.7E-05 3.6E-10 67.2 8.9 89 24-129 444-532 (679)
133 TIGR02250 FCP1_euk FCP1-like p 98.1 1.1E-05 2.4E-10 56.3 5.8 83 23-118 56-141 (156)
134 TIGR01517 ATPase-IIB_Ca plasma 98.0 2.5E-05 5.5E-10 68.7 8.4 127 23-157 577-721 (941)
135 PF06941 NT5C: 5' nucleotidase 98.0 9E-06 1.9E-10 58.5 4.7 115 19-160 67-188 (191)
136 TIGR01647 ATPase-IIIA_H plasma 98.0 2.1E-05 4.6E-10 67.7 7.1 97 23-128 440-558 (755)
137 TIGR00685 T6PP trehalose-phosp 98.0 1.7E-05 3.7E-10 59.2 5.6 67 88-160 169-242 (244)
138 TIGR01524 ATPase-IIIB_Mg magne 98.0 3.8E-05 8.2E-10 67.0 8.2 101 23-128 513-626 (867)
139 PRK15122 magnesium-transportin 97.9 3.3E-05 7.1E-10 67.6 7.8 123 23-156 548-688 (903)
140 TIGR02463 MPGP_rel mannosyl-3- 97.9 7.2E-05 1.6E-09 54.8 8.2 40 87-128 180-219 (221)
141 PRK10517 magnesium-transportin 97.9 3.3E-05 7.2E-10 67.6 7.3 99 23-129 548-662 (902)
142 TIGR01545 YfhB_g-proteo haloac 97.9 0.00065 1.4E-08 49.7 12.8 103 24-130 93-201 (210)
143 KOG3120|consensus 97.9 2.9E-05 6.3E-10 56.4 5.3 118 16-134 75-213 (256)
144 TIGR01523 ATPase-IID_K-Na pota 97.8 0.00011 2.3E-09 65.5 8.0 127 23-157 644-798 (1053)
145 TIGR01675 plant-AP plant acid 97.8 0.00019 4.1E-09 53.0 8.1 90 23-119 118-211 (229)
146 PHA03398 viral phosphatase sup 97.7 8.2E-05 1.8E-09 56.7 6.0 49 27-76 150-198 (303)
147 COG0474 MgtA Cation transport 97.7 0.00012 2.7E-09 64.2 7.9 105 23-133 545-667 (917)
148 smart00775 LNS2 LNS2 domain. T 97.7 0.0011 2.3E-08 46.3 10.4 101 24-126 26-141 (157)
149 TIGR01452 PGP_euk phosphoglyco 97.6 0.00054 1.2E-08 52.2 8.9 99 14-128 6-108 (279)
150 PRK00192 mannosyl-3-phosphogly 97.6 0.00036 7.8E-09 52.9 7.6 44 86-131 190-234 (273)
151 TIGR01652 ATPase-Plipid phosph 97.6 0.00024 5.2E-09 63.4 7.5 128 23-158 629-820 (1057)
152 TIGR01487 SPP-like sucrose-pho 97.5 0.00031 6.6E-09 51.3 6.5 59 85-148 146-204 (215)
153 KOG0207|consensus 97.5 0.00064 1.4E-08 58.4 8.5 87 23-126 721-807 (951)
154 TIGR01482 SPP-subfamily Sucros 97.5 0.00045 9.8E-09 50.6 6.8 62 83-149 146-207 (225)
155 COG0561 Cof Predicted hydrolas 97.5 0.0011 2.3E-08 50.0 8.7 42 87-130 190-231 (264)
156 TIGR01485 SPP_plant-cyano sucr 97.4 0.00042 9E-09 51.8 6.1 51 81-133 162-212 (249)
157 KOG2961|consensus 97.4 0.00031 6.7E-09 48.3 4.5 103 23-137 59-173 (190)
158 TIGR01106 ATPase-IIC_X-K sodiu 97.4 0.00079 1.7E-08 59.8 8.3 100 23-128 566-707 (997)
159 KOG2470|consensus 97.4 0.00053 1.2E-08 53.2 6.2 106 26-133 241-377 (510)
160 COG3700 AphA Acid phosphatase 97.3 0.001 2.2E-08 47.0 6.4 109 13-133 101-213 (237)
161 PLN03190 aminophospholipid tra 97.3 0.0012 2.6E-08 59.5 8.0 53 104-158 871-923 (1178)
162 TIGR01484 HAD-SF-IIB HAD-super 97.2 0.0006 1.3E-08 49.3 4.8 43 84-128 161-203 (204)
163 TIGR01494 ATPase_P-type ATPase 97.2 0.0026 5.6E-08 52.4 8.9 84 23-126 345-428 (499)
164 TIGR01657 P-ATPase-V P-type AT 97.2 0.0032 6.9E-08 56.4 9.9 43 23-66 654-696 (1054)
165 COG5610 Predicted hydrolase (H 97.2 0.0015 3.3E-08 52.4 6.7 101 25-130 97-201 (635)
166 KOG0202|consensus 97.2 0.002 4.3E-08 55.2 7.7 101 23-126 582-699 (972)
167 TIGR00099 Cof-subfamily Cof su 97.1 0.0006 1.3E-08 51.1 4.0 60 85-149 187-246 (256)
168 TIGR02471 sucr_syn_bact_C sucr 97.1 0.00078 1.7E-08 49.9 4.5 49 81-132 154-202 (236)
169 PF03767 Acid_phosphat_B: HAD 97.1 0.00099 2.1E-08 49.4 5.0 95 24-123 114-211 (229)
170 TIGR01460 HAD-SF-IIA Haloacid 97.1 0.0042 9.2E-08 46.1 8.0 96 15-126 3-102 (236)
171 PF03031 NIF: NLI interacting 97.0 0.00088 1.9E-08 46.6 4.0 84 24-117 35-119 (159)
172 PF05822 UMPH-1: Pyrimidine 5' 97.0 0.0035 7.6E-08 46.7 7.2 97 23-123 88-198 (246)
173 TIGR01680 Veg_Stor_Prot vegeta 97.0 0.0049 1.1E-07 46.6 7.9 105 23-133 143-251 (275)
174 PRK10513 sugar phosphate phosp 97.0 0.00076 1.6E-08 50.8 3.5 60 85-149 195-254 (270)
175 PRK10187 trehalose-6-phosphate 96.9 0.0025 5.3E-08 48.3 5.4 66 88-161 176-244 (266)
176 KOG3128|consensus 96.8 0.0049 1.1E-07 45.9 6.0 99 24-123 137-247 (298)
177 TIGR01658 EYA-cons_domain eyes 96.7 0.029 6.4E-07 41.7 9.4 81 43-134 178-260 (274)
178 PRK10976 putative hydrolase; P 96.6 0.0024 5.1E-08 48.1 3.7 44 87-133 191-234 (266)
179 TIGR01486 HAD-SF-IIB-MPGP mann 96.5 0.0083 1.8E-07 45.0 5.8 45 85-131 175-221 (256)
180 PF11019 DUF2608: Protein of u 96.3 0.048 1E-06 41.1 9.2 108 24-133 80-211 (252)
181 PRK15126 thiamin pyrimidine py 96.3 0.0054 1.2E-07 46.3 4.1 43 87-132 189-231 (272)
182 TIGR01458 HAD-SF-IIA-hyp3 HAD- 96.3 0.006 1.3E-07 46.0 4.1 60 15-75 6-73 (257)
183 PF08282 Hydrolase_3: haloacid 96.3 0.007 1.5E-07 44.4 4.3 60 87-151 187-246 (254)
184 TIGR01456 CECR5 HAD-superfamil 96.2 0.014 3E-07 45.5 5.7 98 14-129 4-109 (321)
185 PRK03669 mannosyl-3-phosphogly 96.1 0.0092 2E-07 45.2 4.2 42 86-129 187-231 (271)
186 PLN02887 hydrolase family prot 96.1 0.0072 1.6E-07 50.7 3.9 58 87-149 508-565 (580)
187 COG3882 FkbH Predicted enzyme 96.0 0.065 1.4E-06 43.7 8.5 94 24-125 254-348 (574)
188 TIGR02461 osmo_MPG_phos mannos 95.8 0.018 3.9E-07 42.5 4.6 41 88-128 183-223 (225)
189 PLN02382 probable sucrose-phos 95.5 0.029 6.4E-07 45.2 5.3 45 87-133 176-223 (413)
190 COG2503 Predicted secreted aci 95.3 0.096 2.1E-06 39.0 6.8 87 23-121 120-210 (274)
191 COG2216 KdpB High-affinity K+ 95.3 0.089 1.9E-06 43.4 7.0 87 25-128 447-533 (681)
192 PRK00192 mannosyl-3-phosphogly 95.1 0.052 1.1E-06 41.1 5.2 54 15-69 9-64 (273)
193 KOG0206|consensus 94.9 0.15 3.3E-06 46.0 7.9 32 23-54 649-680 (1151)
194 PF05116 S6PP: Sucrose-6F-phos 94.5 0.061 1.3E-06 40.3 4.1 44 87-133 166-209 (247)
195 TIGR02461 osmo_MPG_phos mannos 94.4 0.1 2.2E-06 38.5 5.0 52 15-67 4-56 (225)
196 KOG0210|consensus 94.3 0.2 4.3E-06 42.9 7.0 129 23-158 656-833 (1051)
197 PF05152 DUF705: Protein of un 94.3 0.14 3.1E-06 39.0 5.7 50 26-76 143-192 (297)
198 PRK10513 sugar phosphate phosp 94.3 0.16 3.4E-06 38.2 6.1 60 15-75 8-69 (270)
199 KOG2469|consensus 94.3 0.13 2.8E-06 41.0 5.6 101 32-134 205-336 (424)
200 PLN02580 trehalose-phosphatase 94.3 0.068 1.5E-06 42.6 4.1 71 87-164 302-380 (384)
201 TIGR01487 SPP-like sucrose-pho 93.5 0.15 3.3E-06 37.0 4.6 52 15-67 6-59 (215)
202 COG4030 Uncharacterized protei 93.5 0.72 1.6E-05 34.3 7.8 40 24-65 82-121 (315)
203 TIGR02463 MPGP_rel mannosyl-3- 93.3 0.19 4.2E-06 36.6 4.9 50 16-66 5-56 (221)
204 PRK14501 putative bifunctional 93.1 0.12 2.7E-06 44.7 4.0 62 89-160 660-723 (726)
205 PF08235 LNS2: LNS2 (Lipin/Ned 93.0 1.2 2.7E-05 31.0 8.2 106 24-132 26-149 (157)
206 KOG4549|consensus 92.9 0.73 1.6E-05 30.9 6.5 84 22-115 41-133 (144)
207 TIGR01486 HAD-SF-IIB-MPGP mann 92.9 0.27 5.8E-06 36.8 5.1 50 16-66 5-56 (256)
208 PRK15126 thiamin pyrimidine py 92.8 0.25 5.4E-06 37.3 5.0 53 15-68 7-61 (272)
209 PRK12702 mannosyl-3-phosphogly 92.8 0.24 5.2E-06 38.1 4.8 54 15-69 6-61 (302)
210 TIGR00099 Cof-subfamily Cof su 92.8 0.28 6.1E-06 36.6 5.1 50 16-66 5-56 (256)
211 TIGR02245 HAD_IIID1 HAD-superf 92.7 0.81 1.8E-05 33.1 7.1 96 25-126 45-151 (195)
212 PRK10976 putative hydrolase; P 92.4 0.31 6.8E-06 36.5 5.0 52 15-67 7-60 (266)
213 COG0731 Fe-S oxidoreductases [ 92.3 0.73 1.6E-05 35.5 6.8 36 23-58 90-126 (296)
214 PLN02205 alpha,alpha-trehalose 92.2 0.28 6.1E-06 43.3 5.0 67 88-162 764-846 (854)
215 KOG3107|consensus 92.2 0.62 1.4E-05 37.0 6.3 78 44-133 373-453 (468)
216 PF08282 Hydrolase_3: haloacid 92.1 0.36 7.8E-06 35.2 5.0 50 16-66 4-55 (254)
217 PRK10530 pyridoxal phosphate ( 91.8 0.36 7.8E-06 36.2 4.8 52 15-67 8-61 (272)
218 TIGR01482 SPP-subfamily Sucros 91.4 0.45 9.7E-06 34.6 4.8 51 15-66 3-55 (225)
219 TIGR01484 HAD-SF-IIB HAD-super 91.3 0.46 1E-05 34.1 4.7 45 16-60 5-52 (204)
220 TIGR00715 precor6x_red precorr 91.1 3 6.6E-05 31.5 9.0 64 88-161 186-255 (256)
221 COG4850 Uncharacterized conser 91.0 1.5 3.3E-05 34.2 7.2 88 23-122 194-296 (373)
222 TIGR01689 EcbF-BcbF capsule bi 90.8 1.7 3.6E-05 29.2 6.7 30 25-54 24-53 (126)
223 PRK03669 mannosyl-3-phosphogly 90.4 0.92 2E-05 34.3 5.8 51 15-66 12-64 (271)
224 PF03332 PMM: Eukaryotic phosp 89.9 0.71 1.5E-05 34.0 4.5 45 30-76 1-45 (220)
225 KOG1618|consensus 89.9 1.1 2.3E-05 35.0 5.6 96 16-129 41-144 (389)
226 PF06506 PrpR_N: Propionate ca 89.5 1.4 3.1E-05 31.1 5.8 92 26-134 59-153 (176)
227 KOG2134|consensus 89.3 1.6 3.4E-05 34.9 6.3 102 24-128 103-230 (422)
228 KOG0209|consensus 89.0 1.7 3.6E-05 38.3 6.6 109 23-134 673-836 (1160)
229 PRK00994 F420-dependent methyl 88.9 6.9 0.00015 29.3 8.9 84 39-133 29-118 (277)
230 PRK13762 tRNA-modifying enzyme 88.7 2.2 4.8E-05 33.4 6.8 33 22-54 139-171 (322)
231 TIGR02329 propionate_PrpR prop 88.7 4.9 0.00011 33.7 9.1 88 29-133 85-172 (526)
232 PTZ00174 phosphomannomutase; P 87.9 1.1 2.4E-05 33.4 4.6 45 15-59 10-56 (247)
233 PRK14502 bifunctional mannosyl 87.8 1.3 2.7E-05 38.2 5.2 42 86-129 613-656 (694)
234 TIGR02495 NrdG2 anaerobic ribo 87.5 2.1 4.6E-05 30.3 5.7 39 23-61 72-110 (191)
235 TIGR00262 trpA tryptophan synt 87.4 11 0.00023 28.5 10.7 100 23-134 122-230 (256)
236 PLN02151 trehalose-phosphatase 87.4 0.7 1.5E-05 36.6 3.3 71 88-164 271-348 (354)
237 TIGR02826 RNR_activ_nrdG3 anae 86.3 2.7 5.8E-05 29.0 5.4 46 25-76 72-117 (147)
238 KOG1618|consensus 86.3 0.67 1.4E-05 36.1 2.6 56 81-136 267-345 (389)
239 PLN03017 trehalose-phosphatase 86.2 1.1 2.3E-05 35.7 3.8 71 88-164 285-362 (366)
240 PF02571 CbiJ: Precorrin-6x re 86.1 10 0.00022 28.6 8.8 120 24-158 112-248 (249)
241 cd04728 ThiG Thiazole synthase 86.1 13 0.00027 28.1 9.5 100 23-136 102-209 (248)
242 TIGR03365 Bsubt_queE 7-cyano-7 85.6 1.4 3.1E-05 32.8 4.0 31 23-53 82-112 (238)
243 PRK10187 trehalose-6-phosphate 85.6 1.7 3.8E-05 32.8 4.6 45 15-59 19-71 (266)
244 KOG0204|consensus 85.4 4.4 9.5E-05 35.8 7.2 99 23-130 645-765 (1034)
245 TIGR01485 SPP_plant-cyano sucr 84.5 2.2 4.8E-05 31.7 4.7 50 24-75 20-69 (249)
246 CHL00162 thiG thiamin biosynth 84.1 16 0.00035 27.7 9.4 99 23-135 116-222 (267)
247 PRK14502 bifunctional mannosyl 82.8 2.7 5.8E-05 36.2 4.9 52 15-67 421-474 (694)
248 PF13580 SIS_2: SIS domain; PD 82.7 12 0.00026 25.2 9.8 105 25-131 19-137 (138)
249 PLN02423 phosphomannomutase 80.9 1.4 3.1E-05 32.9 2.5 31 103-133 199-233 (245)
250 PRK15424 propionate catabolism 80.7 10 0.00022 31.9 7.6 88 29-133 95-182 (538)
251 PRK11840 bifunctional sulfur c 80.6 26 0.00056 27.6 10.0 99 23-135 176-282 (326)
252 TIGR02471 sucr_syn_bact_C sucr 80.5 3.5 7.6E-05 30.3 4.4 46 28-76 18-63 (236)
253 TIGR02668 moaA_archaeal probab 79.7 12 0.00025 28.7 7.2 30 23-52 66-96 (302)
254 PLN02951 Molybderin biosynthes 79.6 21 0.00045 28.5 8.8 30 23-52 116-147 (373)
255 KOG0323|consensus 79.5 7.3 0.00016 33.4 6.3 87 23-121 199-287 (635)
256 TIGR03278 methan_mark_10 putat 79.5 11 0.00023 30.6 7.1 51 1-51 54-113 (404)
257 PRK00208 thiG thiazole synthas 79.2 25 0.00054 26.5 9.9 99 23-135 102-208 (250)
258 smart00540 LEM in nuclear memb 78.9 2.2 4.8E-05 23.0 2.1 32 31-62 9-40 (44)
259 PRK13361 molybdenum cofactor b 78.8 15 0.00032 28.7 7.6 30 23-52 71-102 (329)
260 TIGR02109 PQQ_syn_pqqE coenzym 78.7 5.6 0.00012 31.3 5.3 29 23-51 63-91 (358)
261 PLN02887 hydrolase family prot 78.6 4.7 0.0001 34.2 5.0 53 13-66 311-365 (580)
262 PF01993 MTD: methylene-5,6,7, 78.0 12 0.00025 28.2 6.3 84 39-133 28-117 (276)
263 PRK13125 trpA tryptophan synth 77.7 27 0.00058 26.1 9.5 99 28-134 116-217 (244)
264 PRK05301 pyrroloquinoline quin 76.6 7.4 0.00016 30.9 5.4 29 23-51 72-100 (378)
265 COG0602 NrdG Organic radical a 75.6 4.7 0.0001 29.6 3.8 53 1-53 56-111 (212)
266 PRK10076 pyruvate formate lyas 75.1 9 0.0002 28.1 5.2 31 23-53 48-79 (213)
267 TIGR00236 wecB UDP-N-acetylglu 74.4 20 0.00044 28.0 7.4 97 30-134 16-120 (365)
268 PF05690 ThiG: Thiazole biosyn 74.2 35 0.00075 25.6 9.3 99 23-133 102-206 (247)
269 PF02350 Epimerase_2: UDP-N-ac 74.0 4.9 0.00011 31.7 3.8 93 36-136 2-103 (346)
270 PF02593 dTMP_synthase: Thymid 73.9 6.6 0.00014 28.9 4.2 94 23-126 57-156 (217)
271 PTZ00174 phosphomannomutase; P 73.0 3.1 6.7E-05 31.0 2.4 39 88-132 190-232 (247)
272 PLN02177 glycerol-3-phosphate 72.3 57 0.0012 27.3 13.1 93 26-128 111-212 (497)
273 TIGR03470 HpnH hopanoid biosyn 72.2 5.2 0.00011 31.2 3.5 31 23-53 82-112 (318)
274 PLN02591 tryptophan synthase 70.6 43 0.00094 25.2 10.5 102 24-134 114-221 (250)
275 cd05008 SIS_GlmS_GlmD_1 SIS (S 68.4 10 0.00022 24.7 3.9 30 26-55 58-87 (126)
276 cd05014 SIS_Kpsf KpsF-like pro 68.1 8.8 0.00019 25.1 3.5 31 25-55 58-88 (128)
277 TIGR00221 nagA N-acetylglucosa 67.7 60 0.0013 26.1 8.7 36 24-59 173-209 (380)
278 PF04413 Glycos_transf_N: 3-De 67.2 43 0.00093 23.9 8.6 91 27-134 34-128 (186)
279 PRK08883 ribulose-phosphate 3- 67.1 48 0.001 24.4 9.0 106 23-133 88-197 (220)
280 PF03808 Glyco_tran_WecB: Glyc 66.6 42 0.00091 23.5 7.0 85 27-122 34-121 (172)
281 PLN02580 trehalose-phosphatase 66.3 12 0.00026 30.1 4.5 44 15-59 124-174 (384)
282 COG3769 Predicted hydrolase (H 65.9 9.6 0.00021 28.4 3.5 39 27-66 25-63 (274)
283 PLN02423 phosphomannomutase 64.9 13 0.00029 27.7 4.3 45 15-60 12-58 (245)
284 PF02358 Trehalose_PPase: Treh 64.7 13 0.00027 27.4 4.1 45 87-133 166-218 (235)
285 PF08484 Methyltransf_14: C-me 64.6 19 0.00042 25.1 4.8 48 26-76 53-101 (160)
286 PRK11145 pflA pyruvate formate 64.3 17 0.00038 26.8 4.8 30 23-52 80-110 (246)
287 cd05710 SIS_1 A subgroup of th 62.7 15 0.00033 24.0 3.8 30 26-55 59-88 (120)
288 cd04724 Tryptophan_synthase_al 62.2 63 0.0014 24.1 8.4 99 26-133 114-217 (242)
289 PF04413 Glycos_transf_N: 3-De 62.1 21 0.00046 25.5 4.8 78 23-117 103-184 (186)
290 COG2022 ThiG Uncharacterized e 62.1 66 0.0014 24.2 9.0 98 23-134 109-214 (262)
291 PRK15317 alkyl hydroperoxide r 62.0 93 0.002 25.9 10.2 103 23-132 127-242 (517)
292 PF14336 DUF4392: Domain of un 61.6 28 0.00061 26.9 5.6 37 28-64 63-99 (291)
293 TIGR02493 PFLA pyruvate format 60.5 26 0.00056 25.7 5.1 29 23-51 75-104 (235)
294 TIGR03127 RuMP_HxlB 6-phospho 60.4 16 0.00035 25.6 3.9 31 25-55 83-113 (179)
295 PLN02151 trehalose-phosphatase 60.4 18 0.00038 28.8 4.4 42 16-58 104-152 (354)
296 TIGR02666 moaA molybdenum cofa 59.8 45 0.00097 26.0 6.6 30 23-52 69-100 (334)
297 PF05240 APOBEC_C: APOBEC-like 59.3 13 0.00029 21.1 2.6 26 28-53 2-27 (55)
298 PF01380 SIS: SIS domain SIS d 58.9 21 0.00045 23.2 4.0 31 25-55 64-94 (131)
299 PF06189 5-nucleotidase: 5'-nu 58.7 80 0.0017 24.1 8.2 92 23-135 162-262 (264)
300 KOG3189|consensus 58.3 19 0.00041 26.4 3.8 50 24-76 27-76 (252)
301 PRK14501 putative bifunctional 57.8 19 0.00042 31.4 4.6 46 14-59 496-549 (726)
302 PRK10916 ADP-heptose:LPS hepto 57.1 92 0.002 24.3 10.4 27 108-134 264-290 (348)
303 COG0378 HypB Ni2+-binding GTPa 56.3 34 0.00073 24.9 4.9 69 81-156 22-93 (202)
304 COG2896 MoaA Molybdenum cofact 56.1 44 0.00096 26.3 5.8 82 23-126 69-152 (322)
305 PF04123 DUF373: Domain of unk 55.7 35 0.00076 27.1 5.3 27 91-121 90-116 (344)
306 PRK09348 glyQ glycyl-tRNA synt 55.6 18 0.00038 27.4 3.4 121 1-128 4-133 (283)
307 TIGR00388 glyQ glycyl-tRNA syn 55.6 20 0.00043 27.3 3.7 121 1-128 1-130 (293)
308 cd05013 SIS_RpiR RpiR-like pro 55.6 20 0.00044 23.3 3.6 27 27-53 73-99 (139)
309 PLN03017 trehalose-phosphatase 55.5 23 0.00051 28.3 4.3 43 15-58 116-165 (366)
310 KOG1160|consensus 55.2 28 0.0006 28.7 4.7 39 16-54 357-395 (601)
311 TIGR02494 PFLE_PFLC glycyl-rad 55.1 29 0.00064 26.4 4.8 30 23-52 135-165 (295)
312 cd05006 SIS_GmhA Phosphoheptos 54.7 20 0.00043 25.1 3.5 30 24-53 111-140 (177)
313 COG5663 Uncharacterized conser 54.5 15 0.00032 26.2 2.7 96 24-138 71-168 (194)
314 COG2241 CobL Precorrin-6B meth 54.5 84 0.0018 23.1 6.8 80 41-134 68-150 (210)
315 PF06014 DUF910: Bacterial pro 54.5 11 0.00025 21.9 1.8 25 91-121 7-31 (62)
316 TIGR00640 acid_CoA_mut_C methy 54.4 28 0.0006 23.4 4.0 82 24-120 36-122 (132)
317 TIGR02193 heptsyl_trn_I lipopo 53.8 99 0.0021 23.7 9.6 27 108-134 257-283 (319)
318 KOG0780|consensus 53.7 1.2E+02 0.0027 24.8 8.2 88 24-120 138-230 (483)
319 COG4502 5'(3')-deoxyribonucleo 53.7 52 0.0011 22.8 5.1 29 21-50 64-92 (180)
320 PRK13937 phosphoheptose isomer 53.6 24 0.00051 25.2 3.8 31 24-54 116-146 (188)
321 PLN02205 alpha,alpha-trehalose 53.3 23 0.0005 31.7 4.4 45 15-59 601-651 (854)
322 COG0809 QueA S-adenosylmethion 53.3 37 0.0008 26.8 4.9 91 31-134 189-287 (348)
323 cd06533 Glyco_transf_WecG_TagA 53.1 76 0.0017 22.2 6.3 81 30-121 35-118 (171)
324 PRK12702 mannosyl-3-phosphogly 53.1 1.1E+02 0.0023 23.9 8.8 44 86-129 208-251 (302)
325 cd05005 SIS_PHI Hexulose-6-pho 52.9 25 0.00054 24.6 3.8 31 25-55 86-116 (179)
326 COG1927 Mtd Coenzyme F420-depe 52.8 65 0.0014 23.9 5.8 65 1-66 43-111 (277)
327 PF04055 Radical_SAM: Radical 52.4 60 0.0013 21.4 5.6 31 23-53 55-88 (166)
328 PF02358 Trehalose_PPase: Treh 52.4 18 0.00039 26.6 3.1 31 24-54 18-49 (235)
329 COG1831 Predicted metal-depend 52.1 17 0.00037 27.7 2.9 99 29-133 108-216 (285)
330 TIGR00441 gmhA phosphoheptose 51.8 23 0.00051 24.3 3.4 30 25-54 90-119 (154)
331 PRK14021 bifunctional shikimat 51.7 1.5E+02 0.0032 25.1 9.2 97 27-132 194-303 (542)
332 TIGR03140 AhpF alkyl hydropero 51.6 1.4E+02 0.0031 24.9 10.4 102 23-131 128-242 (515)
333 COG0541 Ffh Signal recognition 51.4 1.2E+02 0.0026 25.0 7.7 103 22-131 135-247 (451)
334 PRK08057 cobalt-precorrin-6x r 49.4 21 0.00045 26.9 3.0 121 25-159 112-245 (248)
335 PRK00286 xseA exodeoxyribonucl 49.3 1.3E+02 0.0029 24.5 7.9 80 26-111 106-199 (438)
336 PF00072 Response_reg: Respons 49.2 35 0.00076 21.1 3.8 39 29-68 57-97 (112)
337 COG0381 WecB UDP-N-acetylgluco 49.0 1.3E+02 0.0028 24.4 7.5 99 32-138 21-130 (383)
338 PRK00414 gmhA phosphoheptose i 48.8 32 0.00069 24.7 3.9 30 25-54 122-151 (192)
339 cd03789 GT1_LPS_heptosyltransf 48.4 1.1E+02 0.0025 22.8 10.5 91 26-135 138-228 (279)
340 cd04795 SIS SIS domain. SIS (S 48.4 28 0.00061 20.7 3.1 23 26-48 59-81 (87)
341 cd05017 SIS_PGI_PMI_1 The memb 48.2 29 0.00063 22.5 3.3 26 26-51 55-80 (119)
342 TIGR03151 enACPred_II putative 47.8 1.3E+02 0.0028 23.3 8.9 44 86-134 148-193 (307)
343 KOG2832|consensus 47.7 63 0.0014 25.9 5.5 81 25-115 214-294 (393)
344 TIGR02195 heptsyl_trn_II lipop 47.4 1.3E+02 0.0028 23.2 10.2 27 108-134 254-280 (334)
345 COG2390 DeoR Transcriptional r 47.3 75 0.0016 25.0 5.9 94 26-124 39-134 (321)
346 cd04906 ACT_ThrD-I_1 First of 47.1 27 0.00059 21.3 2.9 25 28-52 53-77 (85)
347 PF03020 LEM: LEM domain; Int 46.1 3.3 7.1E-05 22.2 -1.2 30 32-61 10-39 (43)
348 PRK13938 phosphoheptose isomer 45.9 35 0.00076 24.7 3.7 31 25-55 124-154 (196)
349 PF13380 CoA_binding_2: CoA bi 45.7 63 0.0014 21.0 4.6 88 29-129 15-107 (116)
350 PF04007 DUF354: Protein of un 45.5 91 0.002 24.7 6.2 95 30-134 16-113 (335)
351 PRK10017 colanic acid biosynth 45.4 1.7E+02 0.0037 24.0 9.7 88 28-133 260-355 (426)
352 PF13034 DUF3895: Protein of u 45.0 36 0.00077 20.8 3.0 31 23-53 43-73 (78)
353 PF13382 Adenine_deam_C: Adeni 44.9 32 0.0007 24.4 3.3 59 102-160 63-134 (171)
354 TIGR00587 nfo apurinic endonuc 44.9 1.3E+02 0.0029 22.6 7.6 92 25-134 8-111 (274)
355 TIGR03568 NeuC_NnaA UDP-N-acet 44.8 1.5E+02 0.0032 23.6 7.4 41 91-135 85-128 (365)
356 PF07862 Nif11: Nitrogen fixat 44.6 37 0.00081 18.3 2.9 43 1-44 1-43 (49)
357 PRK03692 putative UDP-N-acetyl 44.5 1.2E+02 0.0025 22.8 6.4 80 31-122 95-177 (243)
358 COG1180 PflA Pyruvate-formate 44.5 28 0.00061 26.3 3.1 29 26-54 97-125 (260)
359 KOG0208|consensus 44.2 65 0.0014 29.5 5.5 89 27-125 649-744 (1140)
360 COG5426 Uncharacterized membra 44.2 84 0.0018 23.0 5.2 90 24-120 28-128 (254)
361 cd01480 vWA_collagen_alpha_1-V 43.5 69 0.0015 22.5 4.9 70 88-157 91-179 (186)
362 COG3434 Predicted signal trans 43.3 32 0.00069 27.6 3.3 97 21-133 91-193 (407)
363 PLN02334 ribulose-phosphate 3- 43.1 1.3E+02 0.0028 22.0 10.3 103 27-134 101-205 (229)
364 PLN02389 biotin synthase 42.8 1.4E+02 0.003 24.0 7.0 42 26-69 151-193 (379)
365 PRK10886 DnaA initiator-associ 42.8 39 0.00086 24.4 3.5 30 26-55 121-150 (196)
366 PF02606 LpxK: Tetraacyldisacc 42.7 1.2E+02 0.0027 23.8 6.5 27 27-53 51-77 (326)
367 COG0378 HypB Ni2+-binding GTPa 42.2 1.4E+02 0.0029 21.9 7.6 74 32-113 32-105 (202)
368 PRK08005 epimerase; Validated 42.1 1.4E+02 0.003 21.9 9.9 103 24-133 89-193 (210)
369 COG0036 Rpe Pentose-5-phosphat 41.6 1.5E+02 0.0031 22.1 9.5 104 23-133 91-199 (220)
370 cd06589 GH31 The enzymes of gl 41.5 31 0.00067 26.0 3.0 28 25-52 63-90 (265)
371 PRK08649 inosine 5-monophospha 41.1 1.9E+02 0.0041 23.2 10.9 94 30-134 120-218 (368)
372 PF06437 ISN1: IMP-specific 5' 41.0 35 0.00076 27.5 3.2 42 88-133 351-401 (408)
373 PF09949 DUF2183: Uncharacteri 41.0 49 0.0011 21.2 3.4 32 87-122 51-83 (100)
374 COG3019 Predicted metal-bindin 40.4 79 0.0017 21.7 4.4 61 30-97 39-103 (149)
375 PF05116 S6PP: Sucrose-6F-phos 40.4 58 0.0013 24.3 4.3 43 32-76 26-68 (247)
376 cd00733 GlyRS_alpha_core Class 40.3 28 0.00061 26.3 2.5 41 88-128 88-129 (279)
377 COG1922 WecG Teichoic acid bio 40.3 1.2E+02 0.0026 23.0 5.9 81 30-122 97-181 (253)
378 PF13580 SIS_2: SIS domain; PD 40.3 33 0.00072 23.0 2.7 26 24-49 113-138 (138)
379 cd07043 STAS_anti-anti-sigma_f 40.2 59 0.0013 19.7 3.7 38 29-69 58-95 (99)
380 PRK13936 phosphoheptose isomer 39.9 47 0.001 23.8 3.6 31 25-55 122-152 (197)
381 PF02350 Epimerase_2: UDP-N-ac 39.5 1.9E+02 0.0041 22.8 7.5 85 27-132 199-285 (346)
382 TIGR01290 nifB nitrogenase cof 39.2 1.9E+02 0.0041 23.8 7.3 50 2-51 61-120 (442)
383 PF00578 AhpC-TSA: AhpC/TSA fa 39.2 65 0.0014 20.4 4.0 34 27-60 45-78 (124)
384 PRK00994 F420-dependent methyl 39.0 84 0.0018 23.7 4.7 50 16-66 62-111 (277)
385 PRK10964 ADP-heptose:LPS hepto 38.9 1.8E+02 0.0039 22.3 9.4 28 108-135 256-283 (322)
386 COG2099 CobK Precorrin-6x redu 38.8 1.7E+02 0.0038 22.2 8.7 102 24-133 111-231 (257)
387 CHL00200 trpA tryptophan synth 38.3 1.8E+02 0.0038 22.1 10.5 105 20-133 123-233 (263)
388 PF00834 Ribul_P_3_epim: Ribul 38.2 1.4E+02 0.0031 21.6 5.9 104 23-131 87-194 (201)
389 COG2121 Uncharacterized protei 38.0 1.6E+02 0.0035 21.7 7.3 76 43-132 70-154 (214)
390 PRK11382 frlB fructoselysine-6 37.9 54 0.0012 25.7 3.9 30 26-55 104-133 (340)
391 PF01993 MTD: methylene-5,6,7, 37.7 1.1E+02 0.0024 23.1 5.2 54 12-66 57-110 (276)
392 KOG1014|consensus 37.7 1.7E+02 0.0037 23.0 6.4 19 33-51 65-83 (312)
393 PRK11557 putative DNA-binding 37.6 54 0.0012 24.7 3.8 32 24-55 185-216 (278)
394 COG0761 lytB 4-Hydroxy-3-methy 37.4 2E+02 0.0043 22.4 7.5 45 88-138 227-271 (294)
395 TIGR03572 WbuZ glycosyl amidat 37.4 1.6E+02 0.0035 21.4 9.4 45 84-133 182-229 (232)
396 PRK10422 lipopolysaccharide co 37.3 2E+02 0.0043 22.5 10.7 27 108-134 265-291 (352)
397 cd08612 GDPD_GDE4 Glycerophosp 37.2 1.6E+02 0.0035 22.6 6.4 33 31-65 251-283 (300)
398 TIGR02886 spore_II_AA anti-sig 37.0 74 0.0016 19.8 3.9 36 31-69 61-96 (106)
399 PF13394 Fer4_14: 4Fe-4S singl 36.9 38 0.00083 21.7 2.5 26 28-53 65-92 (119)
400 PF05728 UPF0227: Uncharacteri 36.9 1.2E+02 0.0026 21.7 5.2 41 90-134 48-91 (187)
401 PF13604 AAA_30: AAA domain; P 36.7 1.6E+02 0.0034 21.0 7.9 76 30-114 35-131 (196)
402 PF04131 NanE: Putative N-acet 36.6 72 0.0016 23.1 4.0 65 72-145 67-134 (192)
403 KOG1605|consensus 36.0 4.1 8.8E-05 31.0 -2.5 96 25-130 131-227 (262)
404 TIGR00696 wecB_tagA_cpsF bacte 35.9 1.6E+02 0.0034 20.9 6.7 81 31-122 38-120 (177)
405 PRK00164 moaA molybdenum cofac 35.9 1.7E+02 0.0037 22.6 6.5 29 23-51 75-105 (331)
406 PF06434 Aconitase_2_N: Aconit 35.9 62 0.0014 23.5 3.5 42 25-66 37-83 (204)
407 TIGR00237 xseA exodeoxyribonuc 35.9 2.5E+02 0.0053 23.1 7.5 79 28-111 102-194 (432)
408 PF01976 DUF116: Protein of un 35.9 38 0.00082 23.6 2.5 24 30-53 75-98 (158)
409 COG1834 N-Dimethylarginine dim 35.6 1.8E+02 0.0039 22.3 6.1 90 30-123 40-147 (267)
410 COG1877 OtsB Trehalose-6-phosp 35.5 84 0.0018 24.0 4.4 68 88-157 184-255 (266)
411 COG2230 Cfa Cyclopropane fatty 35.4 1.2E+02 0.0027 23.4 5.3 46 89-136 59-107 (283)
412 TIGR00190 thiC thiamine biosyn 35.4 1.6E+02 0.0035 24.0 6.1 88 24-134 157-266 (423)
413 PRK13111 trpA tryptophan synth 35.4 2E+02 0.0043 21.8 8.4 101 25-134 126-231 (258)
414 PF10113 Fibrillarin_2: Fibril 35.3 1E+02 0.0023 25.3 5.0 45 89-135 209-257 (505)
415 PRK11543 gutQ D-arabinose 5-ph 35.3 63 0.0014 24.9 3.9 31 25-55 100-130 (321)
416 COG2897 SseA Rhodanese-related 35.1 83 0.0018 24.3 4.4 51 82-134 69-125 (285)
417 TIGR00377 ant_ant_sig anti-ant 35.1 80 0.0017 19.6 3.8 37 30-69 64-100 (108)
418 PRK11337 DNA-binding transcrip 35.1 64 0.0014 24.5 3.9 31 25-55 198-228 (292)
419 cd06595 GH31_xylosidase_XylS-l 35.0 46 0.001 25.5 3.1 27 24-50 70-96 (292)
420 TIGR02370 pyl_corrinoid methyl 34.8 1.7E+02 0.0037 21.0 8.3 34 93-128 157-190 (197)
421 TIGR01858 tag_bisphos_ald clas 34.6 2.1E+02 0.0047 22.0 6.9 97 30-134 4-105 (282)
422 KOG2900|consensus 34.5 1.6E+02 0.0036 22.5 5.7 49 25-74 151-199 (380)
423 smart00481 POLIIIAc DNA polyme 34.3 76 0.0016 18.0 3.3 22 30-51 17-38 (67)
424 PRK14908 glycyl-tRNA synthetas 34.2 48 0.001 30.2 3.3 41 88-128 93-134 (1000)
425 PRK15482 transcriptional regul 34.1 65 0.0014 24.4 3.8 32 24-55 192-223 (285)
426 TIGR02201 heptsyl_trn_III lipo 33.8 2.2E+02 0.0049 22.0 10.6 27 108-134 263-289 (344)
427 COG1877 OtsB Trehalose-6-phosp 33.7 87 0.0019 23.9 4.3 35 24-58 39-74 (266)
428 PF07611 DUF1574: Protein of u 33.5 1.8E+02 0.0038 23.2 6.1 36 26-61 250-285 (345)
429 KOG2599|consensus 33.5 52 0.0011 25.3 3.0 31 24-54 163-193 (308)
430 TIGR01369 CPSaseII_lrg carbamo 33.2 90 0.002 28.7 5.0 98 31-133 481-597 (1050)
431 PRK09479 glpX fructose 1,6-bis 33.2 2.4E+02 0.0052 22.2 10.2 100 25-138 164-279 (319)
432 COG0859 RfaF ADP-heptose:LPS h 33.0 2.4E+02 0.0051 22.0 9.6 88 26-134 193-280 (334)
433 cd08608 GDPD_GDE2 Glycerophosp 33.0 1.2E+02 0.0027 24.1 5.2 59 31-107 213-271 (351)
434 PRK02261 methylaspartate mutas 32.8 1.6E+02 0.0034 19.9 8.8 89 31-130 21-118 (137)
435 PRK01372 ddl D-alanine--D-alan 32.7 2.2E+02 0.0048 21.6 6.7 39 88-128 99-137 (304)
436 cd06594 GH31_glucosidase_YihQ 32.6 47 0.001 25.9 2.8 27 24-50 67-93 (317)
437 KOG1154|consensus 32.4 1.7E+02 0.0037 22.2 5.4 89 28-122 35-133 (285)
438 TIGR03700 mena_SCO4494 putativ 32.4 2.5E+02 0.0055 22.1 9.0 98 27-127 111-233 (351)
439 PRK08745 ribulose-phosphate 3- 32.0 2.1E+02 0.0046 21.1 9.9 106 23-133 92-201 (223)
440 cd06591 GH31_xylosidase_XylS X 32.0 54 0.0012 25.5 3.0 26 23-48 61-86 (319)
441 PRK13352 thiamine biosynthesis 32.0 2E+02 0.0043 23.6 6.1 28 24-51 160-188 (431)
442 PF00875 DNA_photolyase: DNA p 31.9 94 0.002 21.3 4.0 40 25-65 50-89 (165)
443 PRK10892 D-arabinose 5-phospha 31.9 59 0.0013 25.1 3.3 31 25-55 105-135 (326)
444 PRK02947 hypothetical protein; 31.9 61 0.0013 24.2 3.2 24 28-51 120-143 (246)
445 PF09861 DUF2088: Domain of un 31.8 1.1E+02 0.0023 22.4 4.3 13 103-115 129-141 (204)
446 COG1820 NagA N-acetylglucosami 31.6 2.8E+02 0.0061 22.5 7.4 101 24-133 169-296 (380)
447 TIGR00393 kpsF KpsF/GutQ famil 31.6 63 0.0014 24.0 3.3 30 25-54 58-87 (268)
448 cd06416 GH25_Lys1-like Lys-1 i 31.5 58 0.0013 23.2 3.0 24 28-51 110-133 (196)
449 COG4312 Uncharacterized protei 31.4 98 0.0021 23.1 4.0 49 25-76 96-144 (247)
450 PF01297 TroA: Periplasmic sol 31.4 2.2E+02 0.0047 21.1 7.0 38 28-65 186-223 (256)
451 PHA01806 hypothetical protein 31.3 2.1E+02 0.0045 20.9 5.7 60 24-99 18-77 (200)
452 COG0263 ProB Glutamate 5-kinas 30.9 59 0.0013 26.0 3.0 25 27-51 30-54 (369)
453 TIGR00682 lpxK tetraacyldisacc 30.9 61 0.0013 25.3 3.1 27 27-53 44-70 (311)
454 PRK01018 50S ribosomal protein 30.7 1.4E+02 0.0031 18.8 5.9 39 23-61 14-52 (99)
455 cd06598 GH31_transferase_CtsZ 30.6 62 0.0013 25.2 3.2 27 24-50 66-92 (317)
456 PF06437 ISN1: IMP-specific 5' 30.6 68 0.0015 26.0 3.3 44 26-69 167-210 (408)
457 PF07085 DRTGG: DRTGG domain; 30.6 40 0.00086 21.4 1.8 41 92-136 32-73 (105)
458 COG3010 NanE Putative N-acetyl 30.5 2.3E+02 0.0049 21.0 5.8 58 72-136 101-160 (229)
459 TIGR00274 N-acetylmuramic acid 30.4 84 0.0018 24.3 3.8 29 27-55 139-167 (291)
460 PF00390 malic: Malic enzyme, 30.3 44 0.00096 24.0 2.1 29 24-52 49-77 (182)
461 cd06592 GH31_glucosidase_KIAA1 30.2 61 0.0013 25.0 3.1 27 24-50 66-92 (303)
462 PRK01906 tetraacyldisaccharide 29.9 72 0.0016 25.3 3.4 27 27-53 72-98 (338)
463 PRK05441 murQ N-acetylmuramic 29.8 85 0.0018 24.3 3.8 30 26-55 143-172 (299)
464 PRK13602 putative ribosomal pr 29.8 1.4E+02 0.0029 18.2 4.1 37 24-60 10-46 (82)
465 cd06599 GH31_glycosidase_Aec37 29.6 62 0.0013 25.2 3.0 26 24-49 69-94 (317)
466 cd01820 PAF_acetylesterase_lik 29.6 51 0.0011 23.6 2.4 25 91-117 21-45 (214)
467 TIGR00685 T6PP trehalose-phosp 29.6 84 0.0018 23.2 3.6 31 25-55 25-56 (244)
468 PRK06203 aroB 3-dehydroquinate 29.6 3E+02 0.0066 22.2 10.2 87 41-132 42-145 (389)
469 cd08583 PI-PLCc_GDPD_SF_unchar 29.5 86 0.0019 23.0 3.6 35 31-67 195-229 (237)
470 PRK10834 vancomycin high tempe 29.4 2.5E+02 0.0054 21.1 11.3 39 91-133 129-170 (239)
471 COG2604 Uncharacterized protei 29.3 1.9E+02 0.0042 24.8 5.9 68 28-113 211-278 (594)
472 cd06597 GH31_transferase_CtsY 29.3 64 0.0014 25.4 3.1 25 26-50 83-107 (340)
473 COG0019 LysA Diaminopimelate d 29.3 2.3E+02 0.005 23.0 6.2 30 102-131 94-125 (394)
474 cd06593 GH31_xylosidase_YicI Y 29.3 65 0.0014 24.8 3.1 26 24-49 62-87 (308)
475 COG1208 GCD1 Nucleoside-diphos 29.1 2.8E+02 0.0062 22.0 6.7 79 28-116 33-112 (358)
476 TIGR02803 ExbD_1 TonB system t 28.9 93 0.002 20.3 3.4 27 23-49 94-121 (122)
477 COG0191 Fba Fructose/tagatose 28.8 2.8E+02 0.006 21.5 6.4 99 29-134 5-108 (286)
478 PF13439 Glyco_transf_4: Glyco 28.8 77 0.0017 21.0 3.1 24 30-53 18-41 (177)
479 cd00296 SIR2 SIR2 superfamily 28.8 2.3E+02 0.0049 20.4 11.9 110 24-137 64-209 (222)
480 PF11181 YflT: Heat induced st 28.7 98 0.0021 19.6 3.4 24 28-51 10-36 (103)
481 PRK12738 kbaY tagatose-bisphos 28.7 2.8E+02 0.006 21.5 6.8 98 29-134 5-107 (286)
482 COG5190 FCP1 TFIIF-interacting 28.6 1.7E+02 0.0037 23.8 5.3 96 25-134 252-347 (390)
483 PF13911 AhpC-TSA_2: AhpC/TSA 28.6 1.3E+02 0.0028 19.1 4.0 28 31-58 3-30 (115)
484 KOG1359|consensus 28.5 67 0.0014 25.3 2.9 99 26-135 272-379 (417)
485 cd06414 GH25_LytC-like The Lyt 28.3 81 0.0017 22.4 3.2 25 28-52 113-137 (191)
486 cd01766 Ufm1 Urm1-like ubiquit 28.2 1.1E+02 0.0023 18.5 3.1 41 83-125 24-64 (82)
487 PF01075 Glyco_transf_9: Glyco 28.2 2.4E+02 0.0051 20.5 7.7 30 104-134 183-212 (247)
488 KOG3111|consensus 28.0 2.5E+02 0.0053 20.7 7.1 101 23-134 94-200 (224)
489 PF11848 DUF3368: Domain of un 27.9 64 0.0014 17.4 2.1 18 27-44 18-35 (48)
490 cd06603 GH31_GANC_GANAB_alpha 27.8 69 0.0015 25.2 3.0 27 23-49 59-85 (339)
491 PRK09423 gldA glycerol dehydro 27.8 3.1E+02 0.0067 21.7 9.3 94 28-132 15-116 (366)
492 COG1911 RPL30 Ribosomal protei 27.6 1.7E+02 0.0037 18.7 4.6 44 18-61 12-55 (100)
493 PF01113 DapB_N: Dihydrodipico 27.6 1.2E+02 0.0025 19.9 3.7 38 24-61 74-111 (124)
494 cd03409 Chelatase_Class_II Cla 27.5 1.1E+02 0.0025 18.7 3.5 17 27-43 44-60 (101)
495 cd04726 KGPDC_HPS 3-Keto-L-gul 27.4 2.2E+02 0.0049 20.0 9.4 95 29-134 91-189 (202)
496 cd06167 LabA_like LabA_like pr 27.2 75 0.0016 21.2 2.8 23 28-50 110-132 (149)
497 PF00696 AA_kinase: Amino acid 26.8 1.2E+02 0.0025 22.2 4.0 25 27-51 19-43 (242)
498 cd08609 GDPD_GDE3 Glycerophosp 26.8 2.7E+02 0.0059 21.7 6.1 40 31-76 235-274 (315)
499 PRK08185 hypothetical protein; 26.8 2.9E+02 0.0063 21.3 6.1 97 31-134 2-101 (283)
500 KOG0205|consensus 26.6 1.2E+02 0.0026 26.7 4.3 98 25-125 492-605 (942)
No 1
>PLN02940 riboflavin kinase
Probab=99.93 E-value=1.9e-24 Score=170.28 Aligned_cols=140 Identities=45% Similarity=0.731 Sum_probs=126.1
Q ss_pred hcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 21 LLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 21 ~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
.....++||+.++|+.|+++|++++|+||+....+...+.+..|+..+|+.+++++ ++...||+|++|..++++++
T Consensus 89 ~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d---~v~~~KP~p~~~~~a~~~lg- 164 (382)
T PLN02940 89 WCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGD---EVEKGKPSPDIFLEAAKRLN- 164 (382)
T ss_pred HccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehh---hcCCCCCCHHHHHHHHHHcC-
Confidence 34578999999999999999999999999998877666664579999999999999 88899999999999999999
Q ss_pred CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCCCCCC
Q psy6288 101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFED 165 (166)
Q Consensus 101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 165 (166)
+++++|+||||+.+|+++|+++|+.++++.++.........++.+++++.++...-.++|+|++
T Consensus 165 -v~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~~~~~~~~~~~ 228 (382)
T PLN02940 165 -VEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEKWGLPPFND 228 (382)
T ss_pred -CChhHEEEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHcCHHHcCCCCccc
Confidence 9999999999999999999999999999998854443446788999999999999889999986
No 2
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=99.93 E-value=2.1e-24 Score=158.67 Aligned_cols=131 Identities=25% Similarity=0.363 Sum_probs=117.3
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|++.|++++|+||+....+...+ +++|+..+|+.+++++ .....||+|..+..++++++ .
T Consensus 87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l-~~~gl~~~F~~i~g~~---~~~~~KP~P~~l~~~~~~~~--~ 160 (220)
T COG0546 87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILL-KALGLADYFDVIVGGD---DVPPPKPDPEPLLLLLEKLG--L 160 (220)
T ss_pred cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHhCCccccceEEcCC---CCCCCCcCHHHHHHHHHHhC--C
Confidence 3589999999999999999999999999988775554 5579999999999977 78899999999999999999 7
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhcC
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELYG 159 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~ 159 (166)
+|++++||||+..|+.+|+++|+++++|.||+...+ ....++++++++.+|...+..
T Consensus 161 ~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~~~l~~ 219 (220)
T COG0546 161 DPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELLALLAE 219 (220)
T ss_pred ChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHHHHHhc
Confidence 888999999999999999999999999999975333 556799999999999987753
No 3
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=99.93 E-value=2e-24 Score=158.05 Aligned_cols=132 Identities=17% Similarity=0.270 Sum_probs=117.8
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|+.+++++ +....||+|..++.++++++ .
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l-~~~gl~~~f~~i~~~~---~~~~~Kp~p~~~~~~~~~~~--~ 153 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGL-KLTGLDEFFDVVITLD---DVEHAKPDPEPVLKALELLG--A 153 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhceeEEEecC---cCCCCCCCcHHHHHHHHHcC--C
Confidence 4679999999999999999999999999988776555 5579999999999999 88889999999999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhcCC
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELYGL 160 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~ 160 (166)
++++++||||+.+|+++|+++|+.++++.|+..... ....++++++++.++.+++..+
T Consensus 154 ~~~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~i~~~ 213 (214)
T PRK13288 154 KPEEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAIVGDM 213 (214)
T ss_pred CHHHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHHHhhc
Confidence 999999999999999999999999999999865443 2356889999999999987554
No 4
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=99.92 E-value=3e-24 Score=160.48 Aligned_cols=125 Identities=24% Similarity=0.355 Sum_probs=112.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|+++|++++|+||+....+...+. ++|+.+||+.+++++ ++...||+|+.|..++++++ +
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~-~~gl~~~Fd~iv~~~---~~~~~KP~p~~~~~a~~~~~--~ 179 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMIS-LLGLSDFFQAVIIGS---ECEHAKPHPDPYLKALEVLK--V 179 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH-HcCChhhCcEEEecC---cCCCCCCChHHHHHHHHHhC--C
Confidence 47899999999999999999999999999888866664 479999999999999 88889999999999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhh
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEF 153 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l 153 (166)
+|++|+||||+..|+++|+++|+.++++.++..... ....++++++++.++
T Consensus 180 ~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~ 231 (248)
T PLN02770 180 SKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDP 231 (248)
T ss_pred ChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhh
Confidence 999999999999999999999999999999853333 335789999999983
No 5
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=99.92 E-value=5.6e-24 Score=155.24 Aligned_cols=129 Identities=22% Similarity=0.278 Sum_probs=114.3
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|+++|++++|+||+....+...+ +++|+..+|+.+++++ +....||+|+.|..++++++ +
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~Kp~p~~~~~~~~~~~--~ 156 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLL-ELLGLAKYFSVLIGGD---SLAQRKPHPDPLLLAAERLG--V 156 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCcHhhCcEEEecC---CCCCCCCChHHHHHHHHHcC--C
Confidence 4679999999999999999999999999887776555 5579999999999998 88889999999999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhh
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPEL 157 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l 157 (166)
++++|+||||+.+|+.+|+++|++++++.+|..... ....++++++++.++..+|
T Consensus 157 ~~~~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~~~~ 213 (213)
T TIGR01449 157 APQQMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELPPLL 213 (213)
T ss_pred ChhHeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHHHhhC
Confidence 999999999999999999999999999998865433 2357899999999987653
No 6
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=99.92 E-value=3.4e-24 Score=155.83 Aligned_cols=131 Identities=24% Similarity=0.246 Sum_probs=117.1
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
....++||+.++|++|+++|++++|+||+....+...+ +.+|+..+|+.+++++ +...+||++..|+.++++++
T Consensus 72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~~l~~~f~~i~~~~---~~~~~KP~~~~~~~~~~~~~-- 145 (205)
T TIGR01454 72 GEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLL-EALGLLPLFDHVIGSD---EVPRPKPAPDIVREALRLLD-- 145 (205)
T ss_pred cccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHcCChhheeeEEecC---cCCCCCCChHHHHHHHHHcC--
Confidence 45789999999999999999999999999988776555 5579999999999998 78889999999999999999
Q ss_pred CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhc
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~ 158 (166)
+++++|+||||+.+|+.+|+++|++++++.||..... ....++++++++.++..++.
T Consensus 146 ~~~~~~l~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~~~~ 204 (205)
T TIGR01454 146 VPPEDAVMVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLALCR 204 (205)
T ss_pred CChhheEEEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHHHhh
Confidence 9999999999999999999999999999999975554 34578999999999987653
No 7
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=99.92 E-value=5.3e-24 Score=159.51 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=113.8
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc-ceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF-HHVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f-d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
....++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+| +.+++++ ++...||+|++|..++++++
T Consensus 96 ~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l-~~~gl~~~f~d~ii~~~---~~~~~KP~p~~~~~a~~~l~- 170 (253)
T TIGR01422 96 EYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVA-PEAALQGYRPDYNVTTD---DVPAGRPAPWMALKNAIELG- 170 (253)
T ss_pred hcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HHHHhcCCCCceEEccc---cCCCCCCCHHHHHHHHHHcC-
Confidence 34689999999999999999999999999988776555 446999986 8999999 88889999999999999999
Q ss_pred CCC-CCceEEEecCHhHHHHHHHcCCeEEEecCCCCC-----------------------c-c-cccccchhhCChhhhh
Q psy6288 101 KPQ-PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP-----------------------K-H-RTEAADLVLNSLEEFK 154 (166)
Q Consensus 101 ~~~-~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~-----------------------~-~-~~~~~~~~~~~~~~l~ 154 (166)
+. +++|+||||+++|+.+|+++|+.+|+|.+|... . + ....++++++++.++.
T Consensus 171 -~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~el~ 249 (253)
T TIGR01422 171 -VYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGAHYVIDTLAELP 249 (253)
T ss_pred -CCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCCCEehhcHHHHH
Confidence 85 999999999999999999999999999998642 1 2 3457899999999998
Q ss_pred hhh
Q psy6288 155 PEL 157 (166)
Q Consensus 155 ~~l 157 (166)
+++
T Consensus 250 ~~~ 252 (253)
T TIGR01422 250 AVI 252 (253)
T ss_pred Hhh
Confidence 764
No 8
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=99.91 E-value=1.7e-23 Score=157.23 Aligned_cols=130 Identities=29% Similarity=0.499 Sum_probs=114.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|+++|++++|+||+....+...+ +++|+..||+.+++++ +....||+|++|..++++++ +
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~ii~~~---d~~~~KP~Pe~~~~a~~~l~--~ 180 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAI-EAVGMEGFFSVVLAAE---DVYRGKPDPEMFMYAAERLG--F 180 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHH-HHcCCHhhCcEEEecc---cCCCCCCCHHHHHHHHHHhC--C
Confidence 4678999999999999999999999999988775555 5579999999999999 88889999999999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcC
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYG 159 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 159 (166)
++++|+||||+..|+.+|+++|+.++++. +.........++++++++.++..+.+.
T Consensus 181 ~p~~~l~IgDs~~Di~aA~~aG~~~i~v~-g~~~~~~l~~ad~vi~~~~el~~~~~~ 236 (260)
T PLN03243 181 IPERCIVFGNSNSSVEAAHDGCMKCVAVA-GKHPVYELSAGDLVVRRLDDLSVVDLK 236 (260)
T ss_pred ChHHeEEEcCCHHHHHHHHHcCCEEEEEe-cCCchhhhccCCEEeCCHHHHHHHHHh
Confidence 99999999999999999999999999997 433333345688999999999877653
No 9
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=99.91 E-value=1.9e-23 Score=154.44 Aligned_cols=130 Identities=21% Similarity=0.205 Sum_probs=115.1
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|+++|++++|+||+........ .+.+|+..+|+.+++++ .....||+|++|..+++++| +
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~-l~~~~l~~~f~~i~~~~---~~~~~KP~p~~~~~~~~~l~--~ 166 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLI-LPQLGWEQRCAVLIGGD---TLAERKPHPLPLLVAAERIG--V 166 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHH-HHHcCchhcccEEEecC---cCCCCCCCHHHHHHHHHHhC--C
Confidence 468999999999999999999999999987766444 45579999999999988 78889999999999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc---cccccchhhCChhhhhhhhc
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH---RTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~---~~~~~~~~~~~~~~l~~~l~ 158 (166)
+|++|+||||+.+|+.+|+++|+.++++.||..... ....++++++++.+|.+.+.
T Consensus 167 ~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~~~ 225 (229)
T PRK13226 167 APTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLWNPAT 225 (229)
T ss_pred ChhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHHHHhc
Confidence 999999999999999999999999999999975322 24578999999999988764
No 10
>PLN02811 hydrolase
Probab=99.91 E-value=4.7e-23 Score=151.46 Aligned_cols=143 Identities=60% Similarity=0.946 Sum_probs=117.9
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC-
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE- 100 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~- 100 (166)
....++||+.++|+.|++.|++++|+||.........+.++.++..+|+.+++++ +.++...||+|++|..++++++.
T Consensus 75 ~~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~-~~~~~~~KP~p~~~~~a~~~~~~~ 153 (220)
T PLN02811 75 PTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGD-DPEVKQGKPAPDIFLAAARRFEDG 153 (220)
T ss_pred hhCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECC-hhhccCCCCCcHHHHHHHHHhCCC
Confidence 3577899999999999999999999999987656555555557889999999887 22356789999999999999930
Q ss_pred CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCCCCCC
Q psy6288 101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPPFED 165 (166)
Q Consensus 101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 165 (166)
.+++++|+||||+.+|+++|+++|+++|+|.++.........++++++++.++...=.++++|-+
T Consensus 154 ~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~~~~~~~~~~~ 218 (220)
T PLN02811 154 PVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKPEEWGLPPFPD 218 (220)
T ss_pred CCCccceEEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCHHHcCCCCCCC
Confidence 07899999999999999999999999999998865444445789999999988776666776654
No 11
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=99.91 E-value=2.4e-23 Score=152.73 Aligned_cols=125 Identities=22% Similarity=0.282 Sum_probs=110.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|+.+++++ +.+..||+|..|+.++++++ +
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~---~~~~~KP~~~~~~~~~~~~~--~ 165 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKL-ERLGVRDFFDAVITSE---EEGVEKPHPKIFYAALKRLG--V 165 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HhCChHHhccEEEEec---cCCCCCCCHHHHHHHHHHcC--C
Confidence 4689999999999999999999999999877776665 4479999999999999 88999999999999999999 9
Q ss_pred CCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCc---ccccccchhhCChhhh
Q psy6288 103 QPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPK---HRTEAADLVLNSLEEF 153 (166)
Q Consensus 103 ~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~---~~~~~~~~~~~~~~~l 153 (166)
++++||||||++ +|+.+|+++|+.+|++.++.... .....++++++++.++
T Consensus 166 ~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 166 KPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred ChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 999999999998 89999999999999999886433 1234678889998876
No 12
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=99.91 E-value=5e-23 Score=151.10 Aligned_cols=129 Identities=24% Similarity=0.219 Sum_probs=113.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc--cccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL--KLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~--~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
...++||+.++|+.|+++|++++|+||+....+...+ +.+|+. ++|+.+++++ +....||+|++|..++++++
T Consensus 85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l-~~~~l~~~~~f~~i~~~~---~~~~~KP~p~~~~~a~~~~~- 159 (220)
T TIGR03351 85 PPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLL-EKLGWTVGDDVDAVVCPS---DVAAGRPAPDLILRAMELTG- 159 (220)
T ss_pred CCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HHhhhhhhccCCEEEcCC---cCCCCCCCHHHHHHHHHHcC-
Confidence 3589999999999999999999999999988876665 446998 9999999999 88889999999999999999
Q ss_pred CCC-CCceEEEecCHhHHHHHHHcCCeE-EEecCCCCCcc--cccccchhhCChhhhhhhh
Q psy6288 101 KPQ-PSKCLVFEDAPNGVLGAKAAGMSC-VMVPDPTVPKH--RTEAADLVLNSLEEFKPEL 157 (166)
Q Consensus 101 ~~~-~~~~i~IGD~~~Di~~a~~~G~~~-i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l 157 (166)
+. |++|+||||+.+|+++|+++|+.+ +++.++..... ....++++++++.++...+
T Consensus 160 -~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l~~~~ 219 (220)
T TIGR03351 160 -VQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADLPALL 219 (220)
T ss_pred -CCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHHHHhh
Confidence 87 799999999999999999999999 99988865443 2346888999999987653
No 13
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.90 E-value=6.9e-23 Score=159.80 Aligned_cols=128 Identities=29% Similarity=0.470 Sum_probs=113.0
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|+++|++++|+||+....+...+ +++|+..||+.+++++ ++...||+|++|..++++++ +
T Consensus 214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L-~~lgL~~yFd~Iv~sd---dv~~~KP~Peifl~A~~~lg--l 287 (381)
T PLN02575 214 IYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAI-GSIGIRGFFSVIVAAE---DVYRGKPDPEMFIYAAQLLN--F 287 (381)
T ss_pred CCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCHHHceEEEecC---cCCCCCCCHHHHHHHHHHcC--C
Confidence 4678999999999999999999999999988886665 5579999999999999 88889999999999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhh
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPEL 157 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l 157 (166)
+|++|+||||+..|+++|+++|+.+|+|.++.... ....++++++++.+|....
T Consensus 288 ~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~-~l~~Ad~iI~s~~EL~~~~ 341 (381)
T PLN02575 288 IPERCIVFGNSNQTVEAAHDARMKCVAVASKHPIY-ELGAADLVVRRLDELSIVD 341 (381)
T ss_pred CcccEEEEcCCHHHHHHHHHcCCEEEEECCCCChh-HhcCCCEEECCHHHHHHHH
Confidence 99999999999999999999999999998764222 2345788999999985543
No 14
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=99.90 E-value=7.6e-23 Score=150.47 Aligned_cols=129 Identities=26% Similarity=0.401 Sum_probs=114.9
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
....++||+.++|+.|+++|++++|+||+....+...+ +.+++..+|+.+++++ .....||+|.+|+.+++++|
T Consensus 89 ~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~Kp~~~~~~~~~~~~~-- 162 (222)
T PRK10826 89 ETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVL-TMFDLRDYFDALASAE---KLPYSKPHPEVYLNCAAKLG-- 162 (222)
T ss_pred cCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-HhCcchhcccEEEEcc---cCCCCCCCHHHHHHHHHHcC--
Confidence 35789999999999999999999999999988775555 5579999999999999 88899999999999999999
Q ss_pred CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhhh
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKPE 156 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~ 156 (166)
++|++|+||||+.+|+.+|+++|++++++.++....+ ....++.+++++.++.++
T Consensus 163 ~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~~ 218 (222)
T PRK10826 163 VDPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTAA 218 (222)
T ss_pred CCHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhhh
Confidence 9999999999999999999999999999998864443 334688999999999765
No 15
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=99.90 E-value=6.4e-23 Score=154.83 Aligned_cols=130 Identities=21% Similarity=0.251 Sum_probs=112.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc-ceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF-HHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f-d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
...++||+.++|+.|+++|++++|+||+....+...+ +.+++..+| +.+++++ +....||+|.+|..++++++
T Consensus 99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l-~~~~l~~~~~d~i~~~~---~~~~~KP~p~~~~~a~~~l~-- 172 (267)
T PRK13478 99 YATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVV-PLAAAQGYRPDHVVTTD---DVPAGRPYPWMALKNAIELG-- 172 (267)
T ss_pred cCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHHhhcCCCceEEEcCC---cCCCCCCChHHHHHHHHHcC--
Confidence 4688999999999999999999999999988775555 445787775 8899998 88889999999999999999
Q ss_pred CC-CCceEEEecCHhHHHHHHHcCCeEEEecCCCCC------------------------cc-cccccchhhCChhhhhh
Q psy6288 102 PQ-PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP------------------------KH-RTEAADLVLNSLEEFKP 155 (166)
Q Consensus 102 ~~-~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~------------------------~~-~~~~~~~~~~~~~~l~~ 155 (166)
+. +++|+||||+.+|+.+|+++|+.+|+|.++... .. ....++++++++.++.+
T Consensus 173 ~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~vi~~~~~l~~ 252 (267)
T PRK13478 173 VYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAGAHYVIDTIADLPA 252 (267)
T ss_pred CCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcCCCeehhhHHHHHH
Confidence 85 699999999999999999999999999998652 11 24578999999999988
Q ss_pred hhc
Q psy6288 156 ELY 158 (166)
Q Consensus 156 ~l~ 158 (166)
.|.
T Consensus 253 ~l~ 255 (267)
T PRK13478 253 VIA 255 (267)
T ss_pred HHH
Confidence 763
No 16
>PRK09449 dUMP phosphatase; Provisional
Probab=99.90 E-value=8.9e-23 Score=150.15 Aligned_cols=129 Identities=21% Similarity=0.275 Sum_probs=110.1
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|+ +|++++|+||+........+ +.+|+..+||.+++++ +.+..||+|.+|..++++++ +
T Consensus 93 ~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~---~~~~~KP~p~~~~~~~~~~~--~ 165 (224)
T PRK09449 93 ICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRL-ERTGLRDYFDLLVISE---QVGVAKPDVAIFDYALEQMG--N 165 (224)
T ss_pred cCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHH-HhCChHHHcCEEEEEC---ccCCCCCCHHHHHHHHHHcC--C
Confidence 3679999999999999 58999999999988776555 4479999999999999 88899999999999999999 7
Q ss_pred C-CCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288 103 Q-PSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 103 ~-~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (166)
. +++|+||||+. +|+.+|+++|+.++++.++.........++++++++.+|.+++.
T Consensus 166 ~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el~~~l~ 223 (224)
T PRK09449 166 PDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSELEQLLC 223 (224)
T ss_pred CCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHHHHHHh
Confidence 5 48999999998 79999999999999998543222222367899999999988654
No 17
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.89 E-value=1.1e-22 Score=149.95 Aligned_cols=130 Identities=14% Similarity=0.157 Sum_probs=106.8
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
....++||+.++|+.|+++|++++|+||+....+...+ +++|+..+|+.+++++ +....||+|+.|..++++++
T Consensus 90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~iv~s~---~~~~~KP~p~~~~~~~~~~~-- 163 (224)
T PRK14988 90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKL-EHTGLDAHLDLLLSTH---TFGYPKEDQRLWQAVAEHTG-- 163 (224)
T ss_pred ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHH-HHCCcHHHCCEEEEee---eCCCCCCCHHHHHHHHHHcC--
Confidence 44789999999999999999999999999988876665 5579999999999999 88889999999999999999
Q ss_pred CCCCceEEEecCHhHHHHHHHcCCe-EEEecCCCCCccc-ccccchhhCChhhhhhhh
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKAAGMS-CVMVPDPTVPKHR-TEAADLVLNSLEEFKPEL 157 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~~G~~-~i~v~~~~~~~~~-~~~~~~~~~~~~~l~~~l 157 (166)
++|++|+||||+..|+++|+++|+. +++|.++...... ...+...++++.++.+.|
T Consensus 164 ~~p~~~l~igDs~~di~aA~~aG~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 221 (224)
T PRK14988 164 LKAERTLFIDDSEPILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLIPSL 221 (224)
T ss_pred CChHHEEEEcCCHHHHHHHHHcCCeEEEEEeCCCCCccchhccCCCcHHHHHHHhhhh
Confidence 9999999999999999999999998 5778876533221 122233455555554443
No 18
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.89 E-value=1.7e-22 Score=148.39 Aligned_cols=128 Identities=21% Similarity=0.345 Sum_probs=112.8
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc-CCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF-DEK 101 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~-~~~ 101 (166)
...++||+.++|++|+++ ++++|+||+....+...+ +.+|+..+||.+++++ +.+..||+|.+|..+++++ +
T Consensus 95 ~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l-~~~~l~~~fd~i~~~~---~~~~~KP~~~~~~~~~~~~~~-- 167 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRL-RKSGLFPFFDDIFVSE---DAGIQKPDKEIFNYALERMPK-- 167 (224)
T ss_pred cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHH-HHCCcHhhcCEEEEcC---ccCCCCCCHHHHHHHHHHhcC--
Confidence 367999999999999999 999999999988775555 5579999999999999 8889999999999999999 9
Q ss_pred CCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhh
Q psy6288 102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPEL 157 (166)
Q Consensus 102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l 157 (166)
++|++|+||||+. +|+.+|+++|++++++.++.........++++++++.+|.++|
T Consensus 168 ~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el~~~~ 224 (224)
T TIGR02254 168 FSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEELYEIL 224 (224)
T ss_pred CCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHHHhhC
Confidence 9999999999998 7999999999999999987544333456788999999988754
No 19
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.89 E-value=4.4e-22 Score=150.64 Aligned_cols=130 Identities=24% Similarity=0.319 Sum_probs=114.7
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|+++|++++|+||++...+...+ +.+++..+|+.+++++ .....||+|++|+.+++++| +
T Consensus 99 ~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l-~~~~i~~~f~~i~~~d---~~~~~Kp~p~~~~~~~~~~g--~ 172 (272)
T PRK13223 99 LTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLL-DQMKIGRYFRWIIGGD---TLPQKKPDPAALLFVMKMAG--V 172 (272)
T ss_pred CCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHH-HHcCcHhhCeEEEecC---CCCCCCCCcHHHHHHHHHhC--C
Confidence 4678999999999999999999999999877665454 4579999999999998 78889999999999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhc
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~ 158 (166)
++++|+||||+.+|+++|+++|+.+++|.+|..... ....++++++++.+|.+.+.
T Consensus 173 ~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~~~~~ 230 (272)
T PRK13223 173 PPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALLPGCA 230 (272)
T ss_pred ChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHHHHHh
Confidence 999999999999999999999999999999865443 23478999999999987654
No 20
>PRK06769 hypothetical protein; Validated
Probab=99.89 E-value=9.5e-23 Score=144.68 Aligned_cols=130 Identities=13% Similarity=0.148 Sum_probs=103.6
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchh--------hHHHHHhhhcCcccccceEE-ecCCCCCccCCCCChHHHHH
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKE--------SFELKTSRHKDTLKLFHHVV-LGSADPEVKQGKPAPDVFLV 93 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~--------~~~~~l~~~~gl~~~fd~v~-~~~~~~~~~~~Kp~~~~~~~ 93 (166)
...++||+.++|++|+++|++++|+||+... ..... .+.+|+..+|.... +++ .....||+|++|..
T Consensus 26 ~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~-l~~~g~~~~~~~~~~~~~---~~~~~KP~p~~~~~ 101 (173)
T PRK06769 26 SFTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQE-LKGFGFDDIYLCPHKHGD---GCECRKPSTGMLLQ 101 (173)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHH-HHhCCcCEEEECcCCCCC---CCCCCCCCHHHHHH
Confidence 4678999999999999999999999998741 12222 23456655543332 344 56788999999999
Q ss_pred HHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc------c--cccccchhhCChhhhhhhhc
Q psy6288 94 AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK------H--RTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 94 ~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~------~--~~~~~~~~~~~~~~l~~~l~ 158 (166)
++++++ .++++|+||||+.+|+.+|+++|+.+|++.++.... + ....++++++++.++..+|+
T Consensus 102 ~~~~l~--~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~l~ 172 (173)
T PRK06769 102 AAEKHG--LDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVNWIL 172 (173)
T ss_pred HHHHcC--CCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHHHHh
Confidence 999999 999999999999999999999999999999985331 1 23468899999999998764
No 21
>PRK11587 putative phosphatase; Provisional
Probab=99.89 E-value=3.2e-22 Score=146.82 Aligned_cols=127 Identities=37% Similarity=0.566 Sum_probs=108.7
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
....++||+.++|+.|+++|++++|+||+........+ +..++ .+|+.+++++ +....||+|..|..+++++|
T Consensus 80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l-~~~~l-~~~~~i~~~~---~~~~~KP~p~~~~~~~~~~g-- 152 (218)
T PRK11587 80 EGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARH-KAAGL-PAPEVFVTAE---RVKRGKPEPDAYLLGAQLLG-- 152 (218)
T ss_pred cCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHH-HhcCC-CCccEEEEHH---HhcCCCCCcHHHHHHHHHcC--
Confidence 45789999999999999999999999999877554444 44677 4578888888 78889999999999999999
Q ss_pred CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhh
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPE 156 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (166)
++|++|+||||+..|+++|+++|+.++++.++.... ....++++++++.++...
T Consensus 153 ~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~~-~~~~~~~~~~~~~el~~~ 206 (218)
T PRK11587 153 LAPQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTP-RLDEVDLVLHSLEQLTVT 206 (218)
T ss_pred CCcccEEEEecchhhhHHHHHCCCEEEEECCCCchh-hhccCCEEecchhheeEE
Confidence 999999999999999999999999999998875332 335688999999998644
No 22
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.89 E-value=3.4e-22 Score=144.53 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=99.0
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
....++||+.++|++|+++|++++|+||+....+...+ +++|+..+||.+++++ +.+..||+|.+|+.++++++
T Consensus 89 ~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~gl~~~fd~i~~s~---~~~~~KP~~~~~~~~~~~~~-- 162 (198)
T TIGR01428 89 LRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLV-KHAGLDDPFDAVLSAD---AVRAYKPAPQVYQLALEALG-- 162 (198)
T ss_pred hcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHCCChhhhheeEehh---hcCCCCCCHHHHHHHHHHhC--
Confidence 45789999999999999999999999999988776665 4469999999999999 89999999999999999999
Q ss_pred CCCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
++|++|+||||+.+|+.+|+++|+.+|++.++.
T Consensus 163 ~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~~ 195 (198)
T TIGR01428 163 VPPDEVLFVASNPWDLGGAKKFGFKTAWVNRPG 195 (198)
T ss_pred CChhhEEEEeCCHHHHHHHHHCCCcEEEecCCC
Confidence 999999999999999999999999999998764
No 23
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=99.89 E-value=1.2e-21 Score=144.02 Aligned_cols=130 Identities=23% Similarity=0.306 Sum_probs=115.3
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++ .....||+|.+++.++++++ .
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~~~--~ 164 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLL-EALGIADYFSVVIGGD---SLPNKKPDPAPLLLACEKLG--L 164 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCccCccEEEcCC---CCCCCCcChHHHHHHHHHcC--C
Confidence 4779999999999999999999999999977665555 5579999999999988 78889999999999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhc
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~ 158 (166)
++++|++|||+.+|+++|+++|+.+++|.+|..... ....++++++++.++...+.
T Consensus 165 ~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~~l~ 222 (226)
T PRK13222 165 DPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLPLLG 222 (226)
T ss_pred ChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHHHHHH
Confidence 999999999999999999999999999999865332 34578899999999988764
No 24
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.88 E-value=7.9e-22 Score=149.09 Aligned_cols=135 Identities=18% Similarity=0.229 Sum_probs=114.3
Q ss_pred hhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHH
Q psy6288 17 MDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAK 96 (166)
Q Consensus 17 ~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~ 96 (166)
+........++||+.++|+.|+++|++++|+||+....+...+ +.+|+.++|+.+++++ .. ++++..+..+++
T Consensus 134 ~~~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L-~~~gl~~~F~~vi~~~---~~---~~k~~~~~~~l~ 206 (273)
T PRK13225 134 LGDCLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFL-QRQGLRSLFSVVQAGT---PI---LSKRRALSQLVA 206 (273)
T ss_pred HHhhcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhheEEEEecC---CC---CCCHHHHHHHHH
Confidence 3334456789999999999999999999999999988776665 5579999999988776 43 245789999999
Q ss_pred HcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhcCC
Q psy6288 97 RFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELYGL 160 (166)
Q Consensus 97 ~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~ 160 (166)
+++ +++++|+||||+..|+.+|+++|+.+|+|.++..... ....++++++++.+|.+++..+
T Consensus 207 ~~~--~~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~~~~~~ 270 (273)
T PRK13225 207 REG--WQPAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQAVTQL 270 (273)
T ss_pred HhC--cChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999976554 3457899999999998876543
No 25
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.88 E-value=1.3e-21 Score=139.84 Aligned_cols=137 Identities=19% Similarity=0.222 Sum_probs=107.1
Q ss_pred hhcCCccchhHHHHHHHHHHCCCCEEEEeCCch---------------hhHHHHHhhhcCcccccceEEecCC--CCCcc
Q psy6288 20 LLLGYNLAIGALRLINHLHKHNIPFAIATSSAK---------------ESFELKTSRHKDTLKLFHHVVLGSA--DPEVK 82 (166)
Q Consensus 20 ~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~---------------~~~~~~l~~~~gl~~~fd~v~~~~~--~~~~~ 82 (166)
......++||+.++|++|+++|++++|+||++. ..+...+ +.+|+ +|+.++.+.. .++..
T Consensus 24 ~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~--~f~~i~~~~~~~~~~~~ 100 (181)
T PRK08942 24 SPDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSL-ADRGG--RLDGIYYCPHHPEDGCD 100 (181)
T ss_pred CHHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCc
Confidence 344578999999999999999999999999863 1121222 33455 4777765431 01456
Q ss_pred CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-ccccc--chhhCChhhhhhhhcC
Q psy6288 83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAA--DLVLNSLEEFKPELYG 159 (166)
Q Consensus 83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~--~~~~~~~~~l~~~l~~ 159 (166)
..||+|.+|..++++++ +++++|+||||+.+|+.+|+++|+.++++.++..... ....+ +++++++.++.+++.+
T Consensus 101 ~~KP~p~~~~~~~~~l~--~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~~~l~~ 178 (181)
T PRK08942 101 CRKPKPGMLLSIAERLN--IDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLPQALKK 178 (181)
T ss_pred CCCCCHHHHHHHHHHcC--CChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHHHHHHHh
Confidence 78999999999999999 9999999999999999999999999999998864333 23345 8999999999998765
Q ss_pred CC
Q psy6288 160 LP 161 (166)
Q Consensus 160 ~~ 161 (166)
.+
T Consensus 179 ~~ 180 (181)
T PRK08942 179 QQ 180 (181)
T ss_pred hc
Confidence 43
No 26
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.87 E-value=1.9e-21 Score=138.87 Aligned_cols=101 Identities=35% Similarity=0.540 Sum_probs=91.3
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|+++|++++|+||+... . ...+++|+..+|+.+++++ +....||+|+.|+.++++++ +
T Consensus 85 ~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~~--~-~~l~~~~l~~~f~~~~~~~---~~~~~kp~p~~~~~~~~~~~--~ 156 (185)
T TIGR01990 85 PADVLPGIKNLLDDLKKNNIKIALASASKNA--P-TVLEKLGLIDYFDAIVDPA---EIKKGKPDPEIFLAAAEGLG--V 156 (185)
T ss_pred CcccCccHHHHHHHHHHCCCeEEEEeCCccH--H-HHHHhcCcHhhCcEEEehh---hcCCCCCChHHHHHHHHHcC--C
Confidence 3578999999999999999999999987532 2 3456679999999999999 88889999999999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEec
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVP 131 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~ 131 (166)
++++|+||||+.+|+++|+++|+++|+|+
T Consensus 157 ~~~~~v~vgD~~~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 157 SPSECIGIEDAQAGIEAIKAAGMFAVGVG 185 (185)
T ss_pred CHHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence 99999999999999999999999999874
No 27
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.87 E-value=1.6e-21 Score=138.78 Aligned_cols=127 Identities=18% Similarity=0.252 Sum_probs=99.3
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchh---------------hHHHHHhhhcCcccccceEEecCC--C------C
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKE---------------SFELKTSRHKDTLKLFHHVVLGSA--D------P 79 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~---------------~~~~~l~~~~gl~~~fd~v~~~~~--~------~ 79 (166)
...++||+.++|++|+++|++++|+||++.. .+... ...+++. |+.++.+.. . .
T Consensus 24 ~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~--~~~i~~~~~~~~~~~~~~~ 100 (176)
T TIGR00213 24 NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWS-LAERDVD--LDGIYYCPHHPEGVEEFRQ 100 (176)
T ss_pred HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHH-HHHcCCC--ccEEEECCCCCcccccccC
Confidence 4678999999999999999999999999841 11112 2223443 666655420 0 0
Q ss_pred CccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeE-EEecCCCCCcc-cccccchhhCChhhhh
Q psy6288 80 EVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSC-VMVPDPTVPKH-RTEAADLVLNSLEEFK 154 (166)
Q Consensus 80 ~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~-i~v~~~~~~~~-~~~~~~~~~~~~~~l~ 154 (166)
....+||+|.+|..++++++ +++++|+||||+.+|+++|+++|+.+ +++.+|..... ....++++++++.+|.
T Consensus 101 ~~~~~KP~p~~~~~a~~~~~--~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 101 VCDCRKPKPGMLLQARKELH--IDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred CCCCCCCCHHHHHHHHHHcC--cChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence 35578999999999999999 99999999999999999999999998 79999854333 2346899999999875
No 28
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.87 E-value=3.7e-21 Score=143.00 Aligned_cols=124 Identities=15% Similarity=0.202 Sum_probs=106.6
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
....++||+.++|+.|++. ++++|+||+... + +..|+..+|+.+++++ +....||+|..|..++++++
T Consensus 110 ~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~-~~~gl~~~fd~i~~~~---~~~~~KP~p~~~~~a~~~~~-- 177 (238)
T PRK10748 110 SRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----P-ELFGLGDYFEFVLRAG---PHGRSKPFSDMYHLAAEKLN-- 177 (238)
T ss_pred hcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----H-HHCCcHHhhceeEecc---cCCcCCCcHHHHHHHHHHcC--
Confidence 4478999999999999975 999999998754 2 4469999999999998 88899999999999999999
Q ss_pred CCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCc----ccccccchhhCChhhhhhhh
Q psy6288 102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPK----HRTEAADLVLNSLEEFKPEL 157 (166)
Q Consensus 102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~----~~~~~~~~~~~~~~~l~~~l 157 (166)
+++++|+||||++ +|+.+|+++|+.++++..+.... .....|++.+.++.+|.+.|
T Consensus 178 ~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el~~~~ 238 (238)
T PRK10748 178 VPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASLTSLI 238 (238)
T ss_pred CChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHHHhhC
Confidence 9999999999995 99999999999999998764321 12245888999999988754
No 29
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.87 E-value=2.3e-21 Score=142.39 Aligned_cols=128 Identities=16% Similarity=0.296 Sum_probs=108.2
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc-eEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH-HVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd-~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
....++||+.++|+.| +++++|+||+....+...+ +++|+..+|+ .+++++ +.+..||+|+.|..++++++
T Consensus 85 ~~~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l-~~~~l~~~F~~~v~~~~---~~~~~KP~p~~~~~a~~~~~- 156 (221)
T PRK10563 85 SELEPIAGANALLESI---TVPMCVVSNGPVSKMQHSL-GKTGMLHYFPDKLFSGY---DIQRWKPDPALMFHAAEAMN- 156 (221)
T ss_pred ccCCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHH-HhcChHHhCcceEeeHH---hcCCCCCChHHHHHHHHHcC-
Confidence 3578999999999999 4999999999987776655 5569999996 688887 78889999999999999999
Q ss_pred CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288 101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (166)
++|++|+||||+..|+++|+++|++++++..+.........++.+++++.++.+.+.
T Consensus 157 -~~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 213 (221)
T PRK10563 157 -VNVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQLPELWK 213 (221)
T ss_pred -CCHHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997654333333455678899999887665
No 30
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.87 E-value=6.3e-21 Score=145.22 Aligned_cols=129 Identities=28% Similarity=0.449 Sum_probs=106.7
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc--eEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH--HVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd--~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
..++||+.++|+.|++.|++++|+||+....+...+ +.++...+|+ .+++++ ++...||+|++|..++++++
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l-~~~~~~~~~~~~~~v~~~---~~~~~KP~p~~~~~a~~~~~-- 216 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIV-NTLLGPERAQGLDVFAGD---DVPKKKPDPDIYNLAAETLG-- 216 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhccccccCceEEEecc---ccCCCCCCHHHHHHHHHHhC--
Confidence 579999999999999999999999999987775444 3333233333 233666 67789999999999999999
Q ss_pred CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (166)
++|++|+||||+.+|+++|+++|+.+|+|.+|.........++++++++.++...-+
T Consensus 217 ~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~~~~ 273 (286)
T PLN02779 217 VDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPLEDF 273 (286)
T ss_pred cChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcchhhh
Confidence 999999999999999999999999999999986655444678999999999876543
No 31
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.86 E-value=3.7e-21 Score=141.68 Aligned_cols=130 Identities=28% Similarity=0.361 Sum_probs=114.3
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..+++|++.+.|+.|++. ++++++||+........+.+ +|+.++||.++.++ +.+..||+|.+|+.+++++| +
T Consensus 97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~-~gl~~~Fd~v~~s~---~~g~~KP~~~~f~~~~~~~g--~ 169 (229)
T COG1011 97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQ-LGLLDYFDAVFISE---DVGVAKPDPEIFEYALEKLG--V 169 (229)
T ss_pred hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHH-cCChhhhheEEEec---ccccCCCCcHHHHHHHHHcC--C
Confidence 478999999999999998 99999999987777667655 69999999999999 99999999999999999999 8
Q ss_pred CCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCc-ccccccchhhCChhhhhhhhcC
Q psy6288 103 QPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPK-HRTEAADLVLNSLEEFKPELYG 159 (166)
Q Consensus 103 ~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~ 159 (166)
+|++++||||+. +|+.+|+++|+.++++..+.... +....+++.+.++.++.+.+..
T Consensus 170 ~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~ 228 (229)
T COG1011 170 PPEEALFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAELLDLLER 228 (229)
T ss_pred CcceEEEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHHHHHHhh
Confidence 999999999999 88899999999999998875332 2225778899999999887653
No 32
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.86 E-value=9e-21 Score=133.35 Aligned_cols=103 Identities=25% Similarity=0.416 Sum_probs=96.1
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
....++||+.++|+.|+++|++++++||++...+...+.+ +|+..+|+.+++++ +.+..||++..|+.++++++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~-~~~~~~f~~i~~~~---~~~~~Kp~~~~~~~~~~~~~-- 147 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLER-LGLDDYFDEIISSD---DVGSRKPDPDAYRRALEKLG-- 147 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHH-TTHGGGCSEEEEGG---GSSSSTTSHHHHHHHHHHHT--
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccc-cccccccccccccc---hhhhhhhHHHHHHHHHHHcC--
Confidence 4678999999999999999999999999998877666655 69999999999999 88999999999999999999
Q ss_pred CCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v 130 (166)
++|++|+||||+..|+.+|+++|+.+|+|
T Consensus 148 ~~p~~~~~vgD~~~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 148 IPPEEILFVGDSPSDVEAAKEAGIKTIWV 176 (176)
T ss_dssp SSGGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred CCcceEEEEeCCHHHHHHHHHcCCeEEeC
Confidence 99999999999999999999999999986
No 33
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.86 E-value=1.2e-20 Score=134.26 Aligned_cols=100 Identities=32% Similarity=0.584 Sum_probs=91.9
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~ 103 (166)
..++||+.++|+.|++.|++++|+||+.... ... ..++|+..+|+.+++++ +...+||+|..|+.++++++ ++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~-~~~~~l~~~f~~i~~~~---~~~~~KP~~~~~~~~~~~~~--~~ 156 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVL-VQELGLRDLFDVVIFSG---DVGRGKPDPDIYLLALKKLG--LK 156 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHH-HHhcCCHHHCCEEEEcC---CCCCCCCCHHHHHHHHHHcC--CC
Confidence 5889999999999999999999999999776 333 34479999999999998 88899999999999999999 99
Q ss_pred CCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288 104 PSKCLVFEDAPNGVLGAKAAGMSCVMV 130 (166)
Q Consensus 104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v 130 (166)
|++|+||||+..|+.+|+++|+.+|+|
T Consensus 157 ~~~~~~vgD~~~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 157 PEECLFVDDSPAGIEAAKAAGMHTVLV 183 (183)
T ss_pred cceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence 999999999999999999999999875
No 34
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.86 E-value=5.2e-21 Score=138.57 Aligned_cols=106 Identities=12% Similarity=0.257 Sum_probs=95.4
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~ 103 (166)
..++||+.++|+.|+++|++++|+||+........+....++..+||.+++++ +.+..||+|+.|+.++++++ ++
T Consensus 83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~---~~~~~KP~p~~~~~~~~~~~--~~ 157 (199)
T PRK09456 83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQ---DLGMRKPEARIYQHVLQAEG--FS 157 (199)
T ss_pred hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEec---ccCCCCCCHHHHHHHHHHcC--CC
Confidence 45899999999999999999999999987765443333347889999999999 89999999999999999999 99
Q ss_pred CCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
|++|+||||+..|+.+|+++|+.++++.++.
T Consensus 158 p~~~l~vgD~~~di~aA~~aG~~~i~~~~~~ 188 (199)
T PRK09456 158 AADAVFFDDNADNIEAANALGITSILVTDKQ 188 (199)
T ss_pred hhHeEEeCCCHHHHHHHHHcCCEEEEecCCc
Confidence 9999999999999999999999999998764
No 35
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.85 E-value=3.5e-20 Score=132.37 Aligned_cols=100 Identities=36% Similarity=0.563 Sum_probs=91.1
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|+.|+++|++++++||+ ..+... .+.+|+..+|+.+++++ .....||+|.+|..++++++ +
T Consensus 86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~-l~~~~l~~~f~~v~~~~---~~~~~kp~~~~~~~~~~~~~--~ 157 (185)
T TIGR02009 86 GAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRI-LAKLGLTDYFDAIVDAD---EVKEGKPHPETFLLAAELLG--V 157 (185)
T ss_pred CCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHH-HHHcChHHHCCEeeehh---hCCCCCCChHHHHHHHHHcC--C
Confidence 4789999999999999999999999998 345444 45579999999999998 88889999999999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMV 130 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v 130 (166)
++++++||||+.+|+++|+++|+++++|
T Consensus 158 ~~~~~v~IgD~~~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 158 SPNECVVFEDALAGVQAARAAGMFAVAV 185 (185)
T ss_pred CHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence 9999999999999999999999999875
No 36
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.84 E-value=5.3e-20 Score=148.50 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=111.6
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..+++||+.++|++|+++|++++|+||+....+...+ +++|+..||+.+++++ ++. .||+|..+..++++++
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l-~~~~l~~~f~~i~~~d---~v~-~~~kP~~~~~al~~l~--- 399 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIV-SYYDLDQWVTETFSIE---QIN-SLNKSDLVKSILNKYD--- 399 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHCCcHhhcceeEecC---CCC-CCCCcHHHHHHHHhcC---
Confidence 4688999999999999999999999999988886665 5579999999999998 653 4677889999998887
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL 160 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (166)
+++|++|||+.+|+.+|+++|+.++++.++.........++++++++.++..++...
T Consensus 400 -~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el~~~l~~~ 456 (459)
T PRK06698 400 -IKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLELKGILSTV 456 (459)
T ss_pred -cceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHHHHHHHHH
Confidence 689999999999999999999999999998654443457899999999999887644
No 37
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=99.84 E-value=3.2e-20 Score=134.64 Aligned_cols=99 Identities=24% Similarity=0.378 Sum_probs=90.1
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~ 103 (166)
..++||+.++|+.|+++|++++|+||+... .... .+.+|+..+|+.+++++ +.+..||+|.+|+.++++++ ++
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~-l~~~~l~~~fd~i~~s~---~~~~~KP~~~~~~~~~~~~~--~~ 176 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGL-LEALGLLEYFDFVVTSY---EVGAEKPDPKIFQEALERAG--IS 176 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHH-HHHCCcHHhcceEEeec---ccCCCCCCHHHHHHHHHHcC--CC
Confidence 578999999999999999999999998754 4444 45579999999999999 88899999999999999999 99
Q ss_pred CCceEEEecCH-hHHHHHHHcCCeEEE
Q psy6288 104 PSKCLVFEDAP-NGVLGAKAAGMSCVM 129 (166)
Q Consensus 104 ~~~~i~IGD~~-~Di~~a~~~G~~~i~ 129 (166)
|++|+||||+. +|+.+|+++|+.+|+
T Consensus 177 ~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 177 PEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred hhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 99999999998 899999999999874
No 38
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.83 E-value=1.1e-19 Score=133.76 Aligned_cols=132 Identities=37% Similarity=0.576 Sum_probs=111.6
Q ss_pred hhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288 20 LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD 99 (166)
Q Consensus 20 ~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 99 (166)
......+.||+.++|+.|++.|+++++.|++.+..+...+ +..|+.++|+.+++++ ++..+||.|+.|..+++++|
T Consensus 81 ~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L-~~~gl~~~f~~~v~~~---dv~~~KP~Pd~yL~Aa~~Lg 156 (221)
T COG0637 81 ELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVL-ARLGLLDYFDVIVTAD---DVARGKPAPDIYLLAAERLG 156 (221)
T ss_pred hhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHH-HHccChhhcchhccHH---HHhcCCCCCHHHHHHHHHcC
Confidence 3345789999999999999999999999999987775555 5579999999999999 88899999999999999999
Q ss_pred CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC---cc-cccccchhhCChhhhhhhh
Q psy6288 100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP---KH-RTEAADLVLNSLEEFKPEL 157 (166)
Q Consensus 100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~---~~-~~~~~~~~~~~~~~l~~~l 157 (166)
++|++|+.|+|+++++++|+++||.++++..+... .. .....+....++.++...+
T Consensus 157 --v~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 216 (221)
T COG0637 157 --VDPEECVVVEDSPAGIQAAKAAGMRVVGVPAGHDRPHLDPLDAHGADTVLLDLAELPALL 216 (221)
T ss_pred --CChHHeEEEecchhHHHHHHHCCCEEEEecCCCCccccchhhhhhcchhhccHHHHHHHH
Confidence 99999999999999999999999999999985332 11 3345566667777666544
No 39
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.83 E-value=5e-20 Score=134.40 Aligned_cols=105 Identities=22% Similarity=0.314 Sum_probs=92.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhh--HHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKES--FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~--~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
...++||+.++|+.|+++|++++|+||+.... ....+ ...++..+||.+++++ +.+..||+|.+|+.++++++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~-~~~~l~~~fd~v~~s~---~~~~~KP~p~~~~~~~~~~g- 166 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEAL-LPGDIMALFDAVVESC---LEGLRKPDPRIYQLMLERLG- 166 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHh-hhhhhHhhCCEEEEee---ecCCCCCCHHHHHHHHHHcC-
Confidence 46789999999999999999999999987543 22222 2357889999999998 88889999999999999999
Q ss_pred CCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
++|++|+||||+..|+.+|+++|+.++++.++
T Consensus 167 -~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~ 198 (211)
T TIGR02247 167 -VAPEECVFLDDLGSNLKPAAALGITTIKVSDE 198 (211)
T ss_pred -CCHHHeEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence 99999999999999999999999999999765
No 40
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.83 E-value=1.2e-19 Score=127.19 Aligned_cols=106 Identities=15% Similarity=0.215 Sum_probs=89.6
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCc---------------hhhHHHHHhhhcCcccccceEE-e----cCCCCCcc
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSA---------------KESFELKTSRHKDTLKLFHHVV-L----GSADPEVK 82 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~---------------~~~~~~~l~~~~gl~~~fd~v~-~----~~~~~~~~ 82 (166)
...++||+.++|++|+++|++++|+||.+ ...+ ..+.+.+|+. |+.++ + ++ +..
T Consensus 27 ~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~-~~~l~~~gl~--fd~ii~~~~~~~~---~~~ 100 (161)
T TIGR01261 27 KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLM-LQIFRSQGII--FDDVLICPHFPDD---NCD 100 (161)
T ss_pred HeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHH-HHHHHHCCCc--eeEEEECCCCCCC---CCC
Confidence 46789999999999999999999999974 2233 3344556885 77654 4 35 678
Q ss_pred CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC
Q psy6288 83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP 136 (166)
Q Consensus 83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~ 136 (166)
..||++.++..++++++ +++++|+||||+.+|+.+|+++|+.++++.++.-.
T Consensus 101 ~~KP~~~~~~~~~~~~~--~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~~~~~ 152 (161)
T TIGR01261 101 CRKPKIKLLEPYLKKNL--IDKARSYVIGDRETDMQLAENLGIRGIQYDEEELN 152 (161)
T ss_pred CCCCCHHHHHHHHHHcC--CCHHHeEEEeCCHHHHHHHHHCCCeEEEEChhhcC
Confidence 89999999999999999 99999999999999999999999999999888543
No 41
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.83 E-value=1.9e-19 Score=131.98 Aligned_cols=122 Identities=14% Similarity=0.108 Sum_probs=98.6
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhc---CcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK---DTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD 99 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~---gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 99 (166)
...++||+.++|++|+++|++++|+||++.......+ ++. ++..+|+.++... ...||+|+.|..++++++
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~-~~~~~~~L~~~f~~~fd~~-----~g~KP~p~~y~~i~~~lg 166 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLF-GHSDAGNLTPYFSGYFDTT-----VGLKTEAQSYVKIAGQLG 166 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-hhccccchhhhcceEEEeC-----cccCCCHHHHHHHHHHhC
Confidence 4679999999999999999999999999977664444 333 6777888777533 236999999999999999
Q ss_pred CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cc-cccchhhCChhh
Q psy6288 100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RT-EAADLVLNSLEE 152 (166)
Q Consensus 100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~-~~~~~~~~~~~~ 152 (166)
++|++|+||||+..|+.+|+++|+.++++.++..... .. .....++.||.+
T Consensus 167 --v~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g~~~~~~~~~~~~~~~~~~~~ 219 (220)
T TIGR01691 167 --SPPREILFLSDIINELDAARKAGLHTGQLVRPGNDPVVDPSFPVYPQFPDLNA 219 (220)
T ss_pred --cChhHEEEEeCCHHHHHHHHHcCCEEEEEECCCCCCCCcccCCCCCeecCccc
Confidence 9999999999999999999999999999998864422 11 222556777765
No 42
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.82 E-value=3.1e-19 Score=155.37 Aligned_cols=126 Identities=29% Similarity=0.426 Sum_probs=111.8
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc-cccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL-KLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~-~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..++||+.++|+.|+++|++++|+||.....+...+ +++|+. .+|+.+++++ +....||+|++|..++++++ +
T Consensus 160 ~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L-~~~gl~~~~Fd~iv~~~---~~~~~KP~Pe~~~~a~~~lg--v 233 (1057)
T PLN02919 160 GIGFPGALELITQCKNKGLKVAVASSADRIKVDANL-AAAGLPLSMFDAIVSAD---AFENLKPAPDIFLAAAKILG--V 233 (1057)
T ss_pred CccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHcCCChhHCCEEEECc---ccccCCCCHHHHHHHHHHcC--c
Confidence 347999999999999999999999999988776665 446996 7899999999 88899999999999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhh
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKP 155 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~ 155 (166)
+|++||||||+..|+++|+++|+.+|+|.++....+ ....++++++++.++..
T Consensus 234 ~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~~ 287 (1057)
T PLN02919 234 PTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNISL 287 (1057)
T ss_pred CcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCCH
Confidence 999999999999999999999999999999864433 34578899999999853
No 43
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.82 E-value=8.5e-20 Score=126.32 Aligned_cols=104 Identities=21% Similarity=0.279 Sum_probs=84.1
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCch---------------hhHHHHHhhhcCcccccceEEe----cCCCCCccC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAK---------------ESFELKTSRHKDTLKLFHHVVL----GSADPEVKQ 83 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~---------------~~~~~~l~~~~gl~~~fd~v~~----~~~~~~~~~ 83 (166)
...++||+.++|+.|+++|++++|+||+.. ..+. .+.+++|+... ..+++ ++ ....
T Consensus 25 ~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~-~~~~~~~~~~~---~~~~ 99 (147)
T TIGR01656 25 DWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVL-ELLRQLGVAVD-GVLFCPHHPAD---NCSC 99 (147)
T ss_pred HeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHH-HHHHhCCCcee-EEEECCCCCCC---CCCC
Confidence 357899999999999999999999999873 2232 33455677521 12222 33 4566
Q ss_pred CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
.||+|++|+.++++++ +++++|+||||+..|+++|+++|+.++++.+|
T Consensus 100 ~KP~~~~~~~~~~~~~--~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 100 RKPKPGLILEALKRLG--VDASRSLVVGDRLRDLQAARNAGLAAVLLVDG 147 (147)
T ss_pred CCCCHHHHHHHHHHcC--CChHHEEEEcCCHHHHHHHHHCCCCEEEecCC
Confidence 7999999999999999 99999999999999999999999999999764
No 44
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.82 E-value=4.5e-19 Score=127.04 Aligned_cols=101 Identities=34% Similarity=0.492 Sum_probs=91.3
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++|+ .+.|+.|++. ++++|+||+....+...+.+ +|+..||+.+++++ +....||+|++|..++++++ +
T Consensus 86 ~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~-~~l~~~fd~i~~~~---~~~~~KP~p~~~~~~~~~~~--~ 157 (188)
T PRK10725 86 SVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAH-LGLRRYFDAVVAAD---DVQHHKPAPDTFLRCAQLMG--V 157 (188)
T ss_pred cCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHh-CCcHhHceEEEehh---hccCCCCChHHHHHHHHHcC--C
Confidence 4567886 5899999875 89999999998877666655 69999999999999 88899999999999999999 8
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEec
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVP 131 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~ 131 (166)
++++||||||+.+|+++|+++|+++|+|.
T Consensus 158 ~~~~~l~igDs~~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 158 QPTQCVVFEDADFGIQAARAAGMDAVDVR 186 (188)
T ss_pred CHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence 99999999999999999999999999985
No 45
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.80 E-value=4.7e-19 Score=126.71 Aligned_cols=99 Identities=19% Similarity=0.233 Sum_probs=89.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccC----CCCChHHHHHHHHHc
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQ----GKPAPDVFLVAAKRF 98 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~----~Kp~~~~~~~~~~~~ 98 (166)
...++||+.++|+.|+ ++++|+||++...+...+ +.+|+..+|+.+++++ +... .||+|++|+.+++++
T Consensus 82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l-~~~gl~~~fd~i~~~~---~~~~~~~~~KP~p~~~~~~~~~~ 154 (184)
T TIGR01993 82 KLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRAL-NRLGIEDCFDGIFCFD---TANPDYLLPKPSPQAYEKALREA 154 (184)
T ss_pred hCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHH-HHcCcHhhhCeEEEee---cccCccCCCCCCHHHHHHHHHHh
Confidence 3568999999999998 589999999988886665 4469999999999998 7666 599999999999999
Q ss_pred CCCCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288 99 DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130 (166)
Q Consensus 99 ~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v 130 (166)
+ ++|++|+||||+.+|+.+|+++|+++++|
T Consensus 155 ~--~~~~~~l~vgD~~~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 155 G--VDPERAIFFDDSARNIAAAKALGMKTVLV 184 (184)
T ss_pred C--CCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence 9 99999999999999999999999999875
No 46
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.80 E-value=3.7e-19 Score=125.73 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=93.3
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCC-chhhHHHHHhhhcCcc---------cccceEEecCCCCCccCCCCChHHHH
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSS-AKESFELKTSRHKDTL---------KLFHHVVLGSADPEVKQGKPAPDVFL 92 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~-~~~~~~~~l~~~~gl~---------~~fd~v~~~~~~~~~~~~Kp~~~~~~ 92 (166)
...++||+.++|+.|+++|++++|+||+ ....+ ..+...+++. .+|+.+++++ .....||.+..++
T Consensus 43 ~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~-~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~---~~~~~kp~~~i~~ 118 (174)
T TIGR01685 43 EVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWA-YEILGTFEITYAGKTVPMHSLFDDRIEIY---KPNKAKQLEMILQ 118 (174)
T ss_pred EEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHH-HHHHHhCCcCCCCCcccHHHhceeeeecc---CCchHHHHHHHHH
Confidence 4688999999999999999999999998 65555 4445667888 9999999998 6666777788888
Q ss_pred HHHHHc--CCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCC
Q psy6288 93 VAAKRF--DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTV 135 (166)
Q Consensus 93 ~~~~~~--~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~ 135 (166)
.+.+.+ + ++|++|+||||+..|+.+|+++|+.++++.++..
T Consensus 119 ~~~~~~~~g--l~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~~ 161 (174)
T TIGR01685 119 KVNKVDPSV--LKPAQILFFDDRTDNVREVWGYGVTSCYCPSGMD 161 (174)
T ss_pred HhhhcccCC--CCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCcc
Confidence 888888 7 8999999999999999999999999999998853
No 47
>KOG3085|consensus
Probab=99.78 E-value=7.7e-19 Score=128.56 Aligned_cols=110 Identities=22% Similarity=0.334 Sum_probs=98.0
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
..+...+++.++++.|+++|..++++||.+.. .. .++..+|+..|||.++.|. ..+..||+|.+|+.++++++
T Consensus 110 ~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r-~~-~~l~~~~l~~~fD~vv~S~---e~g~~KPDp~If~~al~~l~-- 182 (237)
T KOG3085|consen 110 SAWKYLDGMQELLQKLRKKGTILGIISNFDDR-LR-LLLLPLGLSAYFDFVVESC---EVGLEKPDPRIFQLALERLG-- 182 (237)
T ss_pred cCceeccHHHHHHHHHHhCCeEEEEecCCcHH-HH-HHhhccCHHHhhhhhhhhh---hhccCCCChHHHHHHHHHhC--
Confidence 35778899999999999999999999999855 43 4555579999999999999 99999999999999999999
Q ss_pred CCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc
Q psy6288 102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH 138 (166)
Q Consensus 102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~ 138 (166)
+.|++|++|||+. +|+++|+++|+.+++|..+.+...
T Consensus 183 v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~~~~ 220 (237)
T KOG3085|consen 183 VKPEECVHIGDLLENDYEGARNLGWHAILVDNSITALK 220 (237)
T ss_pred CChHHeEEecCccccccHhHHHcCCEEEEEccccchhh
Confidence 9999999999999 999999999999999987754433
No 48
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.75 E-value=3e-17 Score=114.07 Aligned_cols=94 Identities=24% Similarity=0.371 Sum_probs=84.0
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
.....+||+.++|+.|+++|++++|+||+....+...+. .+ +..+|+.+++++ +.. .||+|++|..++++++
T Consensus 61 ~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~-~~-l~~~f~~i~~~~---~~~-~Kp~~~~~~~~~~~~~-- 132 (154)
T TIGR01549 61 AEEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLR-KH-LGDYFDLILGSD---EFG-AKPEPEIFLAALESLG-- 132 (154)
T ss_pred hhheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHH-HH-HHhcCcEEEecC---CCC-CCcCHHHHHHHHHHcC--
Confidence 345678999999999999999999999999888765554 44 788999999988 777 9999999999999999
Q ss_pred CCCCceEEEecCHhHHHHHHHcC
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKAAG 124 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~~G 124 (166)
+++ +|+||||+..|+.+|+++|
T Consensus 133 ~~~-~~l~iGDs~~Di~aa~~aG 154 (154)
T TIGR01549 133 LPP-EVLHVGDNLNDIEGARNAG 154 (154)
T ss_pred CCC-CEEEEeCCHHHHHHHHHcc
Confidence 888 9999999999999999987
No 49
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.75 E-value=3.5e-17 Score=118.30 Aligned_cols=92 Identities=16% Similarity=0.259 Sum_probs=82.2
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP 104 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 104 (166)
.+.++..++|+.|++.|++++|+||+....+...+ +.+|+..+|+.+++++ +... ||+|..+..++++++ +++
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f~~~~~~~---~~~~-KP~p~~~~~~~~~~~--~~~ 178 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFL-TTHGLEILFPVQIWME---DCPP-KPNPEPLILAAKALG--VEA 178 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHH-HHcCchhhCCEEEeec---CCCC-CcCHHHHHHHHHHhC--cCc
Confidence 45556699999999999999999999988776555 5579999999999998 7666 999999999999999 999
Q ss_pred CceEEEecCHhHHHHHHHc
Q psy6288 105 SKCLVFEDAPNGVLGAKAA 123 (166)
Q Consensus 105 ~~~i~IGD~~~Di~~a~~~ 123 (166)
++|+||||+.+|+.+|+++
T Consensus 179 ~~~i~vGD~~~Di~aA~~a 197 (197)
T TIGR01548 179 CHAAMVGDTVDDIITGRKA 197 (197)
T ss_pred ccEEEEeCCHHHHHHHHhC
Confidence 9999999999999999874
No 50
>KOG2914|consensus
Probab=99.75 E-value=3.1e-17 Score=119.58 Aligned_cols=144 Identities=53% Similarity=0.807 Sum_probs=121.4
Q ss_pred HHHHHHhhhhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCCh
Q psy6288 9 YVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88 (166)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~ 88 (166)
+..+....+........+.||+..+++.|+.+|++++++|+.....+..++.++-++...|+.++.++ ++++..+||+|
T Consensus 76 ~~~e~~~~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~~f~~~v~~d-~~~v~~gKP~P 154 (222)
T KOG2914|consen 76 FNKEEEEILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFKNFSHVVLGD-DPEVKNGKPDP 154 (222)
T ss_pred HHHHHHHHHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHHhcCCCeecC-CccccCCCCCc
Confidence 34445555666777889999999999999999999999999998999889888755888898888844 34889999999
Q ss_pred HHHHHHHHHcCCCCCC-CceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhh
Q psy6288 89 DVFLVAAKRFDEKPQP-SKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKP 155 (166)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (166)
++|..+++.++ .++ ++||+++|++..+++|+++|+++|++.+..-.......++.+++++.+..+
T Consensus 155 di~l~A~~~l~--~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (222)
T KOG2914|consen 155 DIYLKAAKRLG--VPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLILESLEDFKP 220 (222)
T ss_pred hHHHHHHHhcC--CCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceecccccccCc
Confidence 99999999999 777 999999999999999999999999998854334455677778888777654
No 51
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.75 E-value=1.6e-17 Score=112.81 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=82.4
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCc--------hhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHH
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSA--------KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAA 95 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~--------~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~ 95 (166)
..++||+.++|+.|++.|++++|+||+. ...+...+ +++++.. +..+.+. ...||++++|+.++
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l-~~~~l~~--~~~~~~~-----~~~KP~~~~~~~~~ 95 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRL-EELGVPI--DVLYACP-----HCRKPKPGMFLEAL 95 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHH-HHCCCCE--EEEEECC-----CCCCCChHHHHHHH
Confidence 5789999999999999999999999998 66564444 5467753 3333322 35799999999999
Q ss_pred HHc-CCCCCCCceEEEec-CHhHHHHHHHcCCeEEEec
Q psy6288 96 KRF-DEKPQPSKCLVFED-APNGVLGAKAAGMSCVMVP 131 (166)
Q Consensus 96 ~~~-~~~~~~~~~i~IGD-~~~Di~~a~~~G~~~i~v~ 131 (166)
+++ + +++++++|||| +..|+.+|+++|+.+|++.
T Consensus 96 ~~~~~--~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 96 KRFNE--IDPEESVYVGDQDLTDLQAAKRAGLAFILVA 131 (132)
T ss_pred HHcCC--CChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence 999 8 89999999999 6899999999999999985
No 52
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.74 E-value=3.7e-17 Score=119.86 Aligned_cols=133 Identities=17% Similarity=0.207 Sum_probs=99.5
Q ss_pred hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEe-------cCCCCCccCCCCChHH
Q psy6288 18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVL-------GSADPEVKQGKPAPDV 90 (166)
Q Consensus 18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~-------~~~~~~~~~~Kp~~~~ 90 (166)
.......+++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|+..+. +........++|++..
T Consensus 78 ~~~~~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 156 (219)
T TIGR00338 78 KEVRENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVK-DKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYKGKT 156 (219)
T ss_pred HHHHhcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceEeeEEEEECCEEEEEecCcccCCcccHHH
Confidence 334445789999999999999999999999999977665444 55799888854322 1100012335678999
Q ss_pred HHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhhhhh
Q psy6288 91 FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFKPEL 157 (166)
Q Consensus 91 ~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~~~l 157 (166)
++.++++++ +++++|+||||+.+|+.+|+++|+..++ . + .......+++++. ++.++.++|
T Consensus 157 ~~~~~~~~~--~~~~~~i~iGDs~~Di~aa~~ag~~i~~-~-~--~~~~~~~a~~~i~~~~~~~~~~~~ 219 (219)
T TIGR00338 157 LLILLRKEG--ISPENTVAVGDGANDLSMIKAAGLGIAF-N-A--KPKLQQKADICINKKDLTDILPLL 219 (219)
T ss_pred HHHHHHHcC--CCHHHEEEEECCHHHHHHHHhCCCeEEe-C-C--CHHHHHhchhccCCCCHHHHHhhC
Confidence 999999999 9999999999999999999999998543 2 1 2223456777766 777777654
No 53
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.73 E-value=5.5e-17 Score=114.83 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=83.6
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~ 103 (166)
..++||+.++|+.|++.|++++|+||++.......+.+.+|+..++ ...||++.+|..++++++ ++
T Consensus 42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~~~------------~~~KP~p~~~~~~l~~~~--~~ 107 (170)
T TIGR01668 42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPVLP------------HAVKPPGCAFRRAHPEMG--LT 107 (170)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEEEc------------CCCCCChHHHHHHHHHcC--CC
Confidence 4789999999999999999999999998322323444445554321 235999999999999999 99
Q ss_pred CCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc
Q psy6288 104 PSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH 138 (166)
Q Consensus 104 ~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~ 138 (166)
+++|+||||+. +|+.+|+++|+.+++|.++....+
T Consensus 108 ~~~~l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~~ 143 (170)
T TIGR01668 108 SEQVAVVGDRLFTDVMGGNRNGSYTILVEPLVHPDQ 143 (170)
T ss_pred HHHEEEECCcchHHHHHHHHcCCeEEEEccCcCCcc
Confidence 99999999998 799999999999999999975544
No 54
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.73 E-value=1.3e-16 Score=115.30 Aligned_cols=120 Identities=13% Similarity=0.150 Sum_probs=95.5
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc----ccceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK----LFHHVVLGSADPEVKQGKPAPDVFLVAAKR 97 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~----~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~ 97 (166)
....++||+.++|+.|++. ++++++||...... ..+.+.+++.. +|+.+++++ . .||+|+.+..++++
T Consensus 71 ~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~-~~~~~~~~l~~~f~~~f~~i~~~~---~---~~~kp~~~~~a~~~ 142 (197)
T PHA02597 71 RYLSAYDDALDVINKLKED-YDFVAVTALGDSID-ALLNRQFNLNALFPGAFSEVLMCG---H---DESKEKLFIKAKEK 142 (197)
T ss_pred HhccCCCCHHHHHHHHHhc-CCEEEEeCCccchh-HHHHhhCCHHHhCCCcccEEEEec---c---CcccHHHHHHHHHH
Confidence 3467999999999999987 57888888765443 33344456665 456777777 3 36779999999999
Q ss_pred cCCCCCCCceEEEecCHhHHHHHHHc--CCeEEEecCCCCCcccccccchhhCChhhhhh
Q psy6288 98 FDEKPQPSKCLVFEDAPNGVLGAKAA--GMSCVMVPDPTVPKHRTEAADLVLNSLEEFKP 155 (166)
Q Consensus 98 ~~~~~~~~~~i~IGD~~~Di~~a~~~--G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~ 155 (166)
++ +++++||||+..|+.+|+++ |++++++.|+.. .....+++.++++.|+.+
T Consensus 143 ~~----~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~~~ 196 (197)
T PHA02597 143 YG----DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDIEN 196 (197)
T ss_pred hC----CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHHhc
Confidence 98 79999999999999999999 999999999954 434566688999988764
No 55
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.72 E-value=5.1e-18 Score=128.94 Aligned_cols=126 Identities=21% Similarity=0.234 Sum_probs=97.3
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP 104 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 104 (166)
.-++++.++++.|++.|. ++|+||.+............|...+|+.+....+......+||+|.+|..++++++ +++
T Consensus 143 ~~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~--~~~ 219 (279)
T TIGR01452 143 FSYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFS--IDP 219 (279)
T ss_pred CCHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhC--CCh
Confidence 348999999999998887 88999987543211222334666777665432111145678999999999999999 999
Q ss_pred CceEEEecCH-hHHHHHHHcCCeEEEecCCCCCccc----------ccccchhhCChhhh
Q psy6288 105 SKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHR----------TEAADLVLNSLEEF 153 (166)
Q Consensus 105 ~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----------~~~~~~~~~~~~~l 153 (166)
++|+||||++ +||.+|+++|+.+++|.||....+. ...|+++++++.++
T Consensus 220 ~~~lmIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 220 ARTLMVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred hhEEEECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 9999999996 9999999999999999999765442 13689999998774
No 56
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.70 E-value=2.4e-17 Score=123.80 Aligned_cols=131 Identities=18% Similarity=0.137 Sum_probs=105.3
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP 104 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 104 (166)
..++++.++++.|++.+++++++||.+....... ....|+..+|+.+.++........+||+|.+|+.++++++ .++
T Consensus 120 ~~y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~-~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~--~~~ 196 (257)
T TIGR01458 120 FSYQILNQAFRLLLDGAKPLLIAIGKGRYYKRKD-GLALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATG--CEP 196 (257)
T ss_pred cCHHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCC-CCCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhC--CCh
Confidence 3478999999999999999999999876544222 3446888888877665411123347999999999999999 999
Q ss_pred CceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc----cccccchhhCChhhhhhhhc
Q psy6288 105 SKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH----RTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 105 ~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~----~~~~~~~~~~~~~~l~~~l~ 158 (166)
++++||||+. +|+.+|+++|+.+++|.+|..... ....|+++++++.++.++++
T Consensus 197 ~~~~~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~~~l~ 255 (257)
T TIGR01458 197 EEAVMIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAVDLIL 255 (257)
T ss_pred hhEEEECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHHHHHHh
Confidence 9999999997 999999999999999999863322 23578999999999998764
No 57
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.70 E-value=2.8e-16 Score=122.10 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=85.7
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCc---------------hhhHHHHHhhhcCcccccceEEec-----CCCCCc
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSA---------------KESFELKTSRHKDTLKLFHHVVLG-----SADPEV 81 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~---------------~~~~~~~l~~~~gl~~~fd~v~~~-----~~~~~~ 81 (166)
....++||+.++|++|+++|++++|+||++ ...+ ..+.+.+|+ +|+.++.+ + +.
T Consensus 27 ~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i-~~iL~~~gl--~fd~i~i~~~~~sd---~~ 100 (354)
T PRK05446 27 DKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLM-MQIFESQGI--KFDEVLICPHFPED---NC 100 (354)
T ss_pred ccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHH-HHHHHHcCC--ceeeEEEeCCcCcc---cC
Confidence 357899999999999999999999999962 2222 233344566 36665433 3 56
Q ss_pred cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 82 KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 82 ~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
..+||+|.++..++++++ +++++++||||+.+|+++|+++|++++++...
T Consensus 101 ~~rKP~p~~l~~a~~~l~--v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~~ 150 (354)
T PRK05446 101 SCRKPKTGLVEEYLAEGA--IDLANSYVIGDRETDVQLAENMGIKGIRYARE 150 (354)
T ss_pred CCCCCCHHHHHHHHHHcC--CCcccEEEEcCCHHHHHHHHHCCCeEEEEECC
Confidence 788999999999999999 99999999999999999999999999999654
No 58
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.70 E-value=1.6e-16 Score=112.01 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=80.6
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchh------------hHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHH
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKE------------SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV 93 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~------------~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~ 93 (166)
++||+.++|+.|++.|++++|+||++.. .+ ..+.+++|+.. +.+++++ .....||+|.++..
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i-~~~l~~~gl~~--~~ii~~~---~~~~~KP~p~~~~~ 116 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKI-EAFLEKLKVPI--QVLAATH---AGLYRKPMTGMWEY 116 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHH-HHHHHHcCCCE--EEEEecC---CCCCCCCccHHHHH
Confidence 6899999999999999999999998753 23 33445568743 5667766 56678999999999
Q ss_pred HHHHcCCCCCCCceEEEecCH--------hHHHHHHHcCCeEEE
Q psy6288 94 AAKRFDEKPQPSKCLVFEDAP--------NGVLGAKAAGMSCVM 129 (166)
Q Consensus 94 ~~~~~~~~~~~~~~i~IGD~~--------~Di~~a~~~G~~~i~ 129 (166)
++++++..+++++++||||+. +|+++|+++|+.+++
T Consensus 117 ~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~ 160 (166)
T TIGR01664 117 LQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY 160 (166)
T ss_pred HHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence 999997226899999999986 799999999998864
No 59
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.2e-16 Score=118.27 Aligned_cols=154 Identities=25% Similarity=0.385 Sum_probs=116.0
Q ss_pred HHHHHHHHHHhhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceE--------
Q psy6288 5 QVLNYVTHVIFDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHV-------- 72 (166)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v-------- 72 (166)
++.+.+..++.|+++.+. ...++||+.++|++|+++|.+++++||++... ...++...++++...+.+
T Consensus 3 ~~~~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~at~ 82 (269)
T COG0647 3 DVMDKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGDATA 82 (269)
T ss_pred chhhhcCEEEEcCcCceEeCCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHHHHH
Confidence 345556667788888666 46799999999999999999999999997443 334444433442222222
Q ss_pred -------------------------------------------Eec--------------------------CCC-----
Q psy6288 73 -------------------------------------------VLG--------------------------SAD----- 78 (166)
Q Consensus 73 -------------------------------------------~~~--------------------------~~~----- 78 (166)
+-+ ..|
T Consensus 83 ~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI~tNpD~~~p~ 162 (269)
T COG0647 83 DYLAKQKPGKKVYVIGEEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFIATNPDLTVPT 162 (269)
T ss_pred HHHHhhCCCCEEEEECCcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEEEeCCCccccC
Confidence 000 000
Q ss_pred ---------------------CCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCC
Q psy6288 79 ---------------------PEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVP 136 (166)
Q Consensus 79 ---------------------~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~ 136 (166)
.-...+||++.+|+.++++++ .++++++||||++ +||.+|.++|+.+++|.+|.+.
T Consensus 163 ~~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~al~~~~--~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~ 240 (269)
T COG0647 163 ERGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEAALEKLG--LDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSS 240 (269)
T ss_pred CCCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHHHHHHhC--CCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCC
Confidence 013569999999999999999 8999999999999 9999999999999999999875
Q ss_pred cc----cccccchhhCChhhhhhhhcCC
Q psy6288 137 KH----RTEAADLVLNSLEEFKPELYGL 160 (166)
Q Consensus 137 ~~----~~~~~~~~~~~~~~l~~~l~~~ 160 (166)
.+ ....|+++++++.++...+..+
T Consensus 241 ~~~~~~~~~~p~~v~~sl~~~~~~~~~~ 268 (269)
T COG0647 241 AEDLDRAEVKPTYVVDSLAELITALKEL 268 (269)
T ss_pred hhhhhhhccCCcchHhhHHHHHhhhhcc
Confidence 44 2357899999999998876543
No 60
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.67 E-value=4e-16 Score=119.58 Aligned_cols=107 Identities=12% Similarity=0.020 Sum_probs=92.2
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc-ccceEEecCCCC----CccCCCCChHHHHHHHHHc
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK-LFHHVVLGSADP----EVKQGKPAPDVFLVAAKRF 98 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~-~fd~v~~~~~~~----~~~~~Kp~~~~~~~~~~~~ 98 (166)
..++||+.++|+.|++.|++++++||.+.... ..+.+++++.. +|+.+++.+... +....||+|.++..+++++
T Consensus 186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~-~~~l~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~ 264 (300)
T PHA02530 186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCE-EDTVEWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK 264 (300)
T ss_pred CCCChhHHHHHHHHHhCCCEEEEEeCCChhhH-HHHHHHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence 57899999999999999999999999997765 45556678886 899888877100 1335799999999999999
Q ss_pred CCCC-CCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 99 DEKP-QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 99 ~~~~-~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
+ . ++++|+||||+..|+.+|+++|+.+++|.||
T Consensus 265 ~--~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g 298 (300)
T PHA02530 265 I--APKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG 298 (300)
T ss_pred h--ccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence 8 7 6799999999999999999999999999987
No 61
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.67 E-value=8.7e-17 Score=113.98 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=80.0
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
....++||+.++|+ +++|+||++...+...+ +++|+..+|+.+++++ +++..||+|..|+.+++++|
T Consensus 87 ~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~---~~~~~KP~p~~f~~~~~~~~-- 153 (175)
T TIGR01493 87 KNLPPWPDSAAALA-------RVAILSNASHWAFDQFA-QQAGLPWYFDRAFSVD---TVRAYKPDPVVYELVFDTVG-- 153 (175)
T ss_pred hcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHH-HHCCCHHHHhhhccHh---hcCCCCCCHHHHHHHHHHHC--
Confidence 45779999999998 38899999988776665 5569999999999999 88899999999999999999
Q ss_pred CCCCceEEEecCHhHHHHHHHc
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKAA 123 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~~ 123 (166)
++|++|+||||+.+|+.+|+++
T Consensus 154 ~~p~~~l~vgD~~~Di~~A~~~ 175 (175)
T TIGR01493 154 LPPDRVLMVAAHQWDLIGARKF 175 (175)
T ss_pred CCHHHeEeEecChhhHHHHhcC
Confidence 9999999999999999999863
No 62
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.66 E-value=3.8e-16 Score=96.02 Aligned_cols=69 Identities=30% Similarity=0.531 Sum_probs=62.8
Q ss_pred CCCCChHHHHHHHHHcCCCCCCCceEEEecC-HhHHHHHHHcCCeEEEecCCCCCccc----ccccchhhCChhhh
Q psy6288 83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDA-PNGVLGAKAAGMSCVMVPDPTVPKHR----TEAADLVLNSLEEF 153 (166)
Q Consensus 83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~-~~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~~~~l 153 (166)
++||+|.+|..++++++ +++++++||||+ .+||.+|+++|+.+++|.+|....+. ...|+++++++.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~--~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLG--VDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHT--SGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcC--CCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence 57999999999999999 999999999999 79999999999999999999766542 36899999999885
No 63
>PLN02954 phosphoserine phosphatase
Probab=99.65 E-value=1.8e-15 Score=111.24 Aligned_cols=129 Identities=10% Similarity=0.123 Sum_probs=94.8
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc--cccceEEec--------C-CCCCccCCCCChHHHH
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL--KLFHHVVLG--------S-ADPEVKQGKPAPDVFL 92 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~--~~fd~v~~~--------~-~~~~~~~~Kp~~~~~~ 92 (166)
..++||+.++|+.|+++|++++|+|++....+... .+.+|+. .+|+..+.. . ........++++..++
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~-l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~ 161 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPV-AAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQ 161 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHH-HHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHH
Confidence 56899999999999999999999999998877554 4557886 456432211 1 0000123567889999
Q ss_pred HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhhhhh
Q psy6288 93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFKPEL 157 (166)
Q Consensus 93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~~~l 157 (166)
.++++++ . ++|+||||+.+|+.+|+++|+..+...++....+ ....++++++++.++.+++
T Consensus 162 ~~~~~~~--~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~~~ 223 (224)
T PLN02954 162 HIKKKHG--Y--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDLIEVL 223 (224)
T ss_pred HHHHHcC--C--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHHHHhh
Confidence 9999988 4 6899999999999998888887655433332222 3456899999999998754
No 64
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.65 E-value=1.6e-15 Score=109.47 Aligned_cols=110 Identities=12% Similarity=0.102 Sum_probs=88.6
Q ss_pred hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCC----------C
Q psy6288 18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKP----------A 87 (166)
Q Consensus 18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp----------~ 87 (166)
........++||+.++|+.|+++|++++|+|++....+...+ +.+|+..+|+..+..+ +.+..+| +
T Consensus 73 ~~~~~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~g~~~~~~~~~~~~---~~g~~~p~~~~~~~~~~k 148 (201)
T TIGR01491 73 EEIFKEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVA-EKLNPDYVYSNELVFD---EKGFIQPDGIVRVTFDNK 148 (201)
T ss_pred HHHHHhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHhCCCeEEEEEEEEc---CCCeEecceeeEEccccH
Confidence 334456789999999999999999999999999977665554 5578888887766654 3333232 3
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
...+..++++++ +++++++||||+.+|+.+|+.+|+..+....+
T Consensus 149 ~~~~~~~~~~~~--~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~ 192 (201)
T TIGR01491 149 GEAVERLKRELN--PSLTETVAVGDSKNDLPMFEVADISISLGDEG 192 (201)
T ss_pred HHHHHHHHHHhC--CCHHHEEEEcCCHhHHHHHHhcCCeEEECCCc
Confidence 468889999999 89999999999999999999999988777655
No 65
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.64 E-value=2.4e-15 Score=106.17 Aligned_cols=127 Identities=19% Similarity=0.298 Sum_probs=98.5
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCc---------------hhhHHHHHhhhcCcccccceEEecCCCC--CccCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSA---------------KESFELKTSRHKDTLKLFHHVVLGSADP--EVKQGK 85 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~---------------~~~~~~~l~~~~gl~~~fd~v~~~~~~~--~~~~~K 85 (166)
.+.+.||+.+++..|++.||+++|+||.+ ...+...+.+ .|. -||.++.|.-.+ .+.++|
T Consensus 29 ~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~-~gv--~id~i~~Cph~p~~~c~cRK 105 (181)
T COG0241 29 DFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILAS-QGV--KIDGILYCPHHPEDNCDCRK 105 (181)
T ss_pred HhccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHH-cCC--ccceEEECCCCCCCCCcccC
Confidence 37889999999999999999999999964 1112222222 233 577777775333 368899
Q ss_pred CChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhhCChhhhh
Q psy6288 86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVLNSLEEFK 154 (166)
Q Consensus 86 p~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~~~~~~l~ 154 (166)
|++.++..++++++ +++++.++|||..+|+++|.++|++.+.+.++..... .....+.+.+++.++.
T Consensus 106 P~~gm~~~~~~~~~--iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (181)
T COG0241 106 PKPGMLLSALKEYN--IDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEFA 173 (181)
T ss_pred CChHHHHHHHHHhC--CCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHHH
Confidence 99999999999999 9999999999999999999999999888877754432 2225567777877776
No 66
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.64 E-value=2.7e-15 Score=101.01 Aligned_cols=101 Identities=27% Similarity=0.300 Sum_probs=89.2
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCC----------------CCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQG----------------KPA 87 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~----------------Kp~ 87 (166)
..+++++.++|+.|+++|++++++|++....+...+.+ +|+..+|+.++++. ..... ||+
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~-~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 98 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEE-LGLDDYFDPVITSN---GAAIYYPKEGLFLGGGPFDIGKPN 98 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHH-cCCchhhhheeccc---hhhhhcccccccccccccccCCCC
Confidence 47899999999999999999999999998877666644 68888888888876 44433 999
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v 130 (166)
+..+..++++++ ..++++++|||+.+|+.+|+++|+.+++|
T Consensus 99 ~~~~~~~~~~~~--~~~~~~~~igD~~~d~~~~~~~g~~~i~v 139 (139)
T cd01427 99 PDKLLAALKLLG--VDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHHHcC--CChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence 999999999999 88999999999999999999999998875
No 67
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.63 E-value=4.6e-15 Score=109.75 Aligned_cols=101 Identities=12% Similarity=0.026 Sum_probs=83.7
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCC----chhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSS----AKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF 98 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~----~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~ 98 (166)
...+++++.++|+.++++|++++++||. ....+ ..+.+.+|+..+|+.+++++ .....||.+. ..++++
T Consensus 112 ~s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a-~~ll~~lGi~~~f~~i~~~d---~~~~~Kp~~~---~~l~~~ 184 (237)
T TIGR01672 112 FSIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVS-KTLAKNFHIPAMNPVIFAGD---KPGQYQYTKT---QWIQDK 184 (237)
T ss_pred CCcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHH-HHHHHHhCCchheeEEECCC---CCCCCCCCHH---HHHHhC
Confidence 3567888999999999999999999998 33333 55666789999999999988 6666788765 355677
Q ss_pred CCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCC
Q psy6288 99 DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP 136 (166)
Q Consensus 99 ~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~ 136 (166)
+ + ++||||+.+|+.+|+++|+.++.|.|+..+
T Consensus 185 ~--i----~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s 216 (237)
T TIGR01672 185 N--I----RIHYGDSDNDITAAKEAGARGIRILRASNS 216 (237)
T ss_pred C--C----eEEEeCCHHHHHHHHHCCCCEEEEEecCCC
Confidence 7 5 799999999999999999999999988643
No 68
>KOG3109|consensus
Probab=99.63 E-value=5.1e-15 Score=105.83 Aligned_cols=107 Identities=19% Similarity=0.141 Sum_probs=93.9
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC---CccCCCCChHHHHHHHHHcC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP---EVKQGKPAPDVFLVAAKRFD 99 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~---~~~~~Kp~~~~~~~~~~~~~ 99 (166)
...|.+-.+.+|-.|++.+ .+++||+.+.++.+.+ +.+|+.++|+.+++++... ....+||.+.+|+++++..|
T Consensus 98 ~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~L-k~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~a~k~ag 174 (244)
T KOG3109|consen 98 DLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRIL-KKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEKAMKVAG 174 (244)
T ss_pred hcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHH-HHhChHHhccceeEeeccCCCCCceeecCCHHHHHHHHHHhC
Confidence 4788899999999999864 8999999999886655 5579999999999997443 34569999999999999999
Q ss_pred CCCC-CCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 100 EKPQ-PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 100 ~~~~-~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
++ |.+++|++||.++|++|++.|+.++++....
T Consensus 175 --i~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~ 208 (244)
T KOG3109|consen 175 --IDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREH 208 (244)
T ss_pred --CCCcCceEEEcCchhhHHHHHhccceeEEEEeee
Confidence 65 9999999999999999999999999997764
No 69
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.61 E-value=6.7e-15 Score=101.17 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=81.5
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
....-|.+.++++.++++|.++.|+||+....+... .+.+|+ +++..+ .||.+..+++++++++ +
T Consensus 44 ~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~-~~~l~v----~fi~~A--------~KP~~~~fr~Al~~m~--l 108 (175)
T COG2179 44 NPDATPELRAWLAELKEAGIKVVVVSNNKESRVARA-AEKLGV----PFIYRA--------KKPFGRAFRRALKEMN--L 108 (175)
T ss_pred CCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhh-hhhcCC----ceeecc--------cCccHHHHHHHHHHcC--C
Confidence 356789999999999999999999999998877444 454565 334333 5999999999999999 9
Q ss_pred CCCceEEEecCH-hHHHHHHHcCCeEEEecC
Q psy6288 103 QPSKCLVFEDAP-NGVLGAKAAGMSCVMVPD 132 (166)
Q Consensus 103 ~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~ 132 (166)
++++|+||||.+ +|+.+|..+|+.+|+|..
T Consensus 109 ~~~~vvmVGDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 109 PPEEVVMVGDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred ChhHEEEEcchhhhhhhcccccCcEEEEEEE
Confidence 999999999999 999999999999999964
No 70
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.61 E-value=1.2e-15 Score=105.60 Aligned_cols=96 Identities=9% Similarity=0.025 Sum_probs=83.5
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc-ccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK-LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~-~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..++||+.++|++|+ .+++++|+|++....+...+ +++++.. +|+.+++++ ++...||. |.+++++++ .
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il-~~l~~~~~~f~~i~~~~---d~~~~KP~---~~k~l~~l~--~ 113 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVL-DLLDPKKYFGYRRLFRD---ECVFVKGK---YVKDLSLLG--R 113 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHH-HHhCcCCCEeeeEEECc---cccccCCe---EeecHHHcC--C
Confidence 467999999999999 47999999999988876554 5568854 569999999 88888987 999999999 9
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVM 129 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~ 129 (166)
++++|++|||+..|+.+|.++|+..--
T Consensus 114 ~p~~~i~i~Ds~~~~~aa~~ngI~i~~ 140 (148)
T smart00577 114 DLSNVIIIDDSPDSWPFHPENLIPIKP 140 (148)
T ss_pred ChhcEEEEECCHHHhhcCccCEEEecC
Confidence 999999999999999999999887543
No 71
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.61 E-value=7.9e-15 Score=109.75 Aligned_cols=71 Identities=21% Similarity=0.293 Sum_probs=61.4
Q ss_pred ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCccc----ccccchhhCChhhh
Q psy6288 81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHR----TEAADLVLNSLEEF 153 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~~~~l 153 (166)
...+||+|.+|+.++++++ +++++++||||++ +|+.+|+++|+.+++|.+|....+. ...|+++++++.++
T Consensus 174 ~~~gKP~~~~~~~~~~~~~--~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 174 VYIGKPNAIIMEKAVEHLG--TEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred cccCCChHHHHHHHHHHcC--CCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCChhhC
Confidence 4457999999999999999 9999999999997 8999999999999999999765441 14688899888764
No 72
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.59 E-value=3.9e-15 Score=109.35 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=94.2
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc--cc--ceEEecCCCCCccCCCCChHH-------
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK--LF--HHVVLGSADPEVKQGKPAPDV------- 90 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~--~f--d~v~~~~~~~~~~~~Kp~~~~------- 90 (166)
....++||+.++|+.|+++|++++|+|++....+...+ +.+ +.. .+ +..++++ .....||.|..
T Consensus 71 ~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~-~~~~~i~~n~~~~~~~---~~~~~kp~p~~~~~~~~~ 145 (219)
T PRK09552 71 ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLL-QGL-IPKEQIYCNGSDFSGE---YITITWPHPCDEHCQNHC 145 (219)
T ss_pred hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHH-HHh-CCcCcEEEeEEEecCC---eeEEeccCCccccccccC
Confidence 45789999999999999999999999999977665444 444 432 22 3334444 56667777653
Q ss_pred ---HHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc--ccccccchhhCChhhhhhhhcC
Q psy6288 91 ---FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK--HRTEAADLVLNSLEEFKPELYG 159 (166)
Q Consensus 91 ---~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~ 159 (166)
...++++++ .++++|+||||+.+|+.+|+++|+..+ .+.... .....+.+.+++|.|+.+.|.+
T Consensus 146 ~~~K~~~l~~~~--~~~~~~i~iGDs~~Di~aa~~Ag~~~a---~~~l~~~~~~~~~~~~~~~~f~ei~~~l~~ 214 (219)
T PRK09552 146 GCCKPSLIRKLS--DTNDFHIVIGDSITDLEAAKQADKVFA---RDFLITKCEELGIPYTPFETFHDVQTELKH 214 (219)
T ss_pred CCchHHHHHHhc--cCCCCEEEEeCCHHHHHHHHHCCccee---HHHHHHHHHHcCCCccccCCHHHHHHHHHH
Confidence 357889999 889999999999999999999999443 221111 1334567788999999888754
No 73
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.58 E-value=7e-15 Score=99.40 Aligned_cols=90 Identities=13% Similarity=0.155 Sum_probs=75.6
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCC-chhhHHHHHhhhcC-------cccccceEEecCCCCCccCCCCChHHHHHHHH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSS-AKESFELKTSRHKD-------TLKLFHHVVLGSADPEVKQGKPAPDVFLVAAK 96 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~-~~~~~~~~l~~~~g-------l~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~ 96 (166)
.++||+.++|+.|+++|++++|+||+ ..... ..+.++++ +..+|+.+++++ .+|+|..+..+++
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~-~~~l~~~~~~~~i~~l~~~f~~~~~~~-------~~pkp~~~~~a~~ 100 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVA-YELLKIFEDFGIIFPLAEYFDPLTIGY-------WLPKSPRLVEIAL 100 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHH-HHHHHhccccccchhhHhhhhhhhhcC-------CCcHHHHHHHHHH
Confidence 47999999999999999999999999 55444 45555567 789999888876 2588999999999
Q ss_pred HcCCCCCCCceEEEecCHhHHHHHHH
Q psy6288 97 RFDEKPQPSKCLVFEDAPNGVLGAKA 122 (166)
Q Consensus 97 ~~~~~~~~~~~i~IGD~~~Di~~a~~ 122 (166)
++|..+.|++|+||||+..|+...++
T Consensus 101 ~lg~~~~p~~~l~igDs~~n~~~~~~ 126 (128)
T TIGR01681 101 KLNGVLKPKSILFVDDRPDNNEEVDY 126 (128)
T ss_pred HhcCCCCcceEEEECCCHhHHHHHHh
Confidence 99833589999999999999888765
No 74
>PRK10444 UMP phosphatase; Provisional
Probab=99.58 E-value=2e-14 Score=107.46 Aligned_cols=70 Identities=16% Similarity=0.292 Sum_probs=62.7
Q ss_pred cCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCccc----ccccchhhCChhhh
Q psy6288 82 KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHR----TEAADLVLNSLEEF 153 (166)
Q Consensus 82 ~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~----~~~~~~~~~~~~~l 153 (166)
..+||++.+++.++++++ +++++|+||||+. +|+.+|+++|+.+++|.+|....+. ...|+++++++.++
T Consensus 171 ~~gKP~~~~~~~~~~~~~--~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 171 YVGKPSPWIIRAALNKMQ--AHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred ccCCCCHHHHHHHHHHcC--CCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 347999999999999999 9999999999998 8999999999999999999776542 25789999999887
No 75
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.58 E-value=6.1e-14 Score=103.74 Aligned_cols=99 Identities=14% Similarity=0.076 Sum_probs=81.0
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCc---hhhHHHHHhhhcCc--ccccceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSA---KESFELKTSRHKDT--LKLFHHVVLGSADPEVKQGKPAPDVFLVAAKR 97 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~l~~~~gl--~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~ 97 (166)
...++||+.++|+.|+++|++++++||.. .......+.+.+|+ .++|+.+++++ .. .||.+.. .+++
T Consensus 112 ~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~vil~gd---~~--~K~~K~~---~l~~ 183 (237)
T PRK11009 112 FSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNPVIFAGD---KP--GQYTKTQ---WLKK 183 (237)
T ss_pred cCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCcccceeEEEcCC---CC--CCCCHHH---HHHh
Confidence 47789999999999999999999999964 23344555666799 88998888877 42 5776653 5567
Q ss_pred cCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCC
Q psy6288 98 FDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTV 135 (166)
Q Consensus 98 ~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~ 135 (166)
++ + ++||||+..|+.+|+++|+.++.+.||..
T Consensus 184 ~~--i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~ 215 (237)
T PRK11009 184 KN--I----RIFYGDSDNDITAAREAGARGIRILRAAN 215 (237)
T ss_pred cC--C----eEEEcCCHHHHHHHHHcCCcEEEEecCCC
Confidence 77 5 99999999999999999999999999864
No 76
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.57 E-value=3.5e-14 Score=109.61 Aligned_cols=130 Identities=15% Similarity=0.098 Sum_probs=94.9
Q ss_pred hhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc-------eEEecCCCCCccCCCCChHHHH
Q psy6288 20 LLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH-------HVVLGSADPEVKQGKPAPDVFL 92 (166)
Q Consensus 20 ~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd-------~v~~~~~~~~~~~~Kp~~~~~~ 92 (166)
.....+++||+.++|+.|++.|++++|+|++...... .+.+.+|+...+. ..+++...+....+||+++.++
T Consensus 176 v~~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~-~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~ 254 (322)
T PRK11133 176 VRENLPLMPGLTELVLKLQALGWKVAIASGGFTYFAD-YLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLT 254 (322)
T ss_pred HHHhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHH-HHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHH
Confidence 3445789999999999999999999999999866553 4455578765443 2222221112334689999999
Q ss_pred HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhhhh
Q psy6288 93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFKPE 156 (166)
Q Consensus 93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~~~ 156 (166)
.+++++| +++++|++|||+.+|+.+++.+|+..++-. .+.....++.+++ ++..+.-+
T Consensus 255 ~la~~lg--i~~~qtIaVGDg~NDl~m~~~AGlgiA~nA----kp~Vk~~Ad~~i~~~~l~~~l~~ 314 (322)
T PRK11133 255 RLAQEYE--IPLAQTVAIGDGANDLPMIKAAGLGIAYHA----KPKVNEQAQVTIRHADLMGVLCI 314 (322)
T ss_pred HHHHHcC--CChhhEEEEECCHHHHHHHHHCCCeEEeCC----CHHHHhhCCEEecCcCHHHHHHH
Confidence 9999999 999999999999999999999999887622 2234456666654 44444433
No 77
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.57 E-value=2.5e-14 Score=103.76 Aligned_cols=134 Identities=14% Similarity=0.106 Sum_probs=94.7
Q ss_pred hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCC-ccCCCCChHHHHHHHH
Q psy6288 18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPE-VKQGKPAPDVFLVAAK 96 (166)
Q Consensus 18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~-~~~~Kp~~~~~~~~~~ 96 (166)
...+....++||+.++|+.|+++ ++++|+|++....+...+ +.+|+..+|+..+....+.. .+..++.|.....+++
T Consensus 61 ~~~~~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~ 138 (205)
T PRK13582 61 QEVIATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLM-RQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVK 138 (205)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHH-HHcCCchhhcceEEECCCCeEECccccccchHHHHHH
Confidence 34445678999999999999999 999999999988775554 55799888876554431100 1122334445566777
Q ss_pred HcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccch-hhCChhhhhhhhc
Q psy6288 97 RFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADL-VLNSLEEFKPELY 158 (166)
Q Consensus 97 ~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~-~~~~~~~l~~~l~ 158 (166)
+++ ..+++|+||||+.+|+.+++.+|+... +.. ........++. +++++.++..++.
T Consensus 139 ~~~--~~~~~~v~iGDs~~D~~~~~aa~~~v~-~~~--~~~~~~~~~~~~~~~~~~el~~~l~ 196 (205)
T PRK13582 139 ALK--SLGYRVIAAGDSYNDTTMLGEADAGIL-FRP--PANVIAEFPQFPAVHTYDELLAAID 196 (205)
T ss_pred HHH--HhCCeEEEEeCCHHHHHHHHhCCCCEE-ECC--CHHHHHhCCcccccCCHHHHHHHHH
Confidence 777 678999999999999999999998543 322 11222234454 8999999987764
No 78
>PLN02645 phosphoglycolate phosphatase
Probab=99.56 E-value=5.1e-15 Score=114.13 Aligned_cols=128 Identities=12% Similarity=0.082 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceE
Q psy6288 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCL 108 (166)
Q Consensus 29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i 108 (166)
.+......|+.++-.++|+||.+............|...+|+.+.++........+||+|.+|..++++++ +++++++
T Consensus 174 ~l~~a~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~--~~~~~~~ 251 (311)
T PLN02645 174 KIQYATLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFG--IEKSQIC 251 (311)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcC--CCcccEE
Confidence 33445556655444788999988542111222335777788877776622223347999999999999999 9999999
Q ss_pred EEecCH-hHHHHHHHcCCeEEEecCCCCCccc------ccccchhhCChhhhhhhhc
Q psy6288 109 VFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHR------TEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 109 ~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~~------~~~~~~~~~~~~~l~~~l~ 158 (166)
||||++ +|+.+|+++|+++++|.+|....+. ...|+++++++.++.+++.
T Consensus 252 ~VGD~~~~Di~~A~~aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~~ 308 (311)
T PLN02645 252 MVGDRLDTDILFGQNGGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTLKA 308 (311)
T ss_pred EEcCCcHHHHHHHHHcCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHHhh
Confidence 999998 9999999999999999999765442 1468999999999988654
No 79
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.50 E-value=6.1e-14 Score=97.70 Aligned_cols=100 Identities=20% Similarity=0.142 Sum_probs=80.5
Q ss_pred HHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec
Q psy6288 33 LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED 112 (166)
Q Consensus 33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD 112 (166)
+|++|+++|++++|+||.....+... .+.+|+..+|+ + .+|++..+..++++++ +++++|+||||
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~-l~~~gi~~~~~----~--------~~~k~~~~~~~~~~~~--~~~~~~~~vGD 100 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDR-CKTLGITHLYQ----G--------QSNKLIAFSDILEKLA--LAPENVAYIGD 100 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHH-HHHcCCCEEEe----c--------ccchHHHHHHHHHHcC--CCHHHEEEECC
Confidence 89999999999999999998877544 45578887763 1 2678999999999999 99999999999
Q ss_pred CHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCCh
Q psy6288 113 APNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSL 150 (166)
Q Consensus 113 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~ 150 (166)
+.+|+.+++++|+. +++.+... .....+++++.+-
T Consensus 101 s~~D~~~~~~ag~~-~~v~~~~~--~~~~~a~~i~~~~ 135 (154)
T TIGR01670 101 DLIDWPVMEKVGLS-VAVADAHP--LLIPRADYVTRIA 135 (154)
T ss_pred CHHHHHHHHHCCCe-EecCCcCH--HHHHhCCEEecCC
Confidence 99999999999997 77766532 2344456655543
No 80
>KOG2882|consensus
Probab=99.49 E-value=1.6e-13 Score=102.70 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=66.7
Q ss_pred ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc--------cccccchhhCChh
Q psy6288 81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH--------RTEAADLVLNSLE 151 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~--------~~~~~~~~~~~~~ 151 (166)
...+||.+.++..++++++ ++|++|+||||+. +||..++++|+++++|.+|.+..+ ....||++++++.
T Consensus 220 ~v~GKP~~~m~~~l~~~~~--i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~ 297 (306)
T KOG2882|consen 220 IVLGKPSTFMFEYLLEKFN--IDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLG 297 (306)
T ss_pred eecCCCCHHHHHHHHHHcC--CCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHH
Confidence 4569999999999999999 9999999999999 999999999999999999987543 2345899999999
Q ss_pred hhhhhhc
Q psy6288 152 EFKPELY 158 (166)
Q Consensus 152 ~l~~~l~ 158 (166)
++.+.+.
T Consensus 298 d~~~~~~ 304 (306)
T KOG2882|consen 298 DLLPLLN 304 (306)
T ss_pred HHhhhcc
Confidence 8887653
No 81
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.47 E-value=1.1e-13 Score=103.19 Aligned_cols=99 Identities=19% Similarity=0.227 Sum_probs=80.2
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceE--EecCCCCCccCCCCChHHHHHHHHHcCCCCC-
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHV--VLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ- 103 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~- 103 (166)
++++.++++.|+++|+++ |+||.+..... ......+...+|..+ .+.+ ....+||++.+|+.++++++ ..
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~-~~~~~~~~g~~~~~i~~~g~~---~~~~gKP~~~~~~~~~~~~~--~~~ 212 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQ-HGIYRYGAGYYAELIKQLGGK---VIYSGKPYPAIFHKALKECS--NIP 212 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccC-CCceEecccHHHHHHHHhCCc---EecCCCCCHHHHHHHHHHcC--CCC
Confidence 799999999998889997 88998765442 233445666666654 4555 55689999999999999998 54
Q ss_pred CCceEEEecCH-hHHHHHHHcCCeEEEecC
Q psy6288 104 PSKCLVFEDAP-NGVLGAKAAGMSCVMVPD 132 (166)
Q Consensus 104 ~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~ 132 (166)
+++|+||||++ +|+.+|+++|+.+++|.+
T Consensus 213 ~~~~~~vGD~~~~Di~~a~~~G~~~i~v~t 242 (242)
T TIGR01459 213 KNRMLMVGDSFYTDILGANRLGIDTALVLT 242 (242)
T ss_pred cccEEEECCCcHHHHHHHHHCCCeEEEEeC
Confidence 67999999995 999999999999999853
No 82
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.46 E-value=2.5e-13 Score=99.46 Aligned_cols=128 Identities=11% Similarity=0.088 Sum_probs=92.8
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc---ceEEecCCCCCccCCCCChHHH--------
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF---HHVVLGSADPEVKQGKPAPDVF-------- 91 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f---d~v~~~~~~~~~~~~Kp~~~~~-------- 91 (166)
...++||+.++|+.|+++|++++|+|++....+...+ +.++...++ +.++.++ .....+|++..+
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~~~~~~i~~n~~~~~~~---~~~~~~p~~~~~~~~~~cg~ 143 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLL-EGIVEKDRIYCNEADFSNE---YIHIDWPHPCDGTCQNQCGC 143 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HhhCCcccEEeceeEeeCC---eeEEeCCCCCccccccCCCC
Confidence 4789999999999999999999999999877665444 333333333 2344444 556677877654
Q ss_pred --HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCc--ccccccchhhCChhhhhhhhcC
Q psy6288 92 --LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK--HRTEAADLVLNSLEEFKPELYG 159 (166)
Q Consensus 92 --~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~ 159 (166)
..++++++ ..+++++||||+.+|+.+|+.+|+ +++ ++.... +....+...+++|.|+.+.|.+
T Consensus 144 ~K~~~l~~~~--~~~~~~i~iGDg~~D~~~a~~Ad~--~~a-r~~l~~~~~~~~~~~~~~~~f~di~~~l~~ 210 (214)
T TIGR03333 144 CKPSLIRKLS--EPNDYHIVIGDSVTDVEAAKQSDL--CFA-RDYLLNECEELGLNHAPFQDFYDVRKELEN 210 (214)
T ss_pred CHHHHHHHHh--hcCCcEEEEeCCHHHHHHHHhCCe--eEe-hHHHHHHHHHcCCCccCcCCHHHHHHHHHH
Confidence 47788888 788999999999999999999998 333 222111 1223456678999999888753
No 83
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.45 E-value=4.4e-13 Score=97.42 Aligned_cols=91 Identities=26% Similarity=0.414 Sum_probs=76.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..+++|++.++|+.|++.|++++++|+.....+. .+.+.+|+ ++.++.+. .. +||.+.++..++++++ .
T Consensus 125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~-~~~~~lgi---~~~~v~a~---~~--~kP~~k~~~~~i~~l~--~ 193 (215)
T PF00702_consen 125 RDPLRPGAKEALQELKEAGIKVAILTGDNESTAS-AIAKQLGI---FDSIVFAR---VI--GKPEPKIFLRIIKELQ--V 193 (215)
T ss_dssp EEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHH-HHHHHTTS---CSEEEEES---HE--TTTHHHHHHHHHHHHT--C
T ss_pred cCcchhhhhhhhhhhhccCcceeeeecccccccc-cccccccc---cccccccc---cc--ccccchhHHHHHHHHh--c
Confidence 3578999999999999999999999999877664 44455788 33434444 12 6999999999999999 8
Q ss_pred CCCceEEEecCHhHHHHHHHcC
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAG 124 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G 124 (166)
++++|+||||+.+|+.+++++|
T Consensus 194 ~~~~v~~vGDg~nD~~al~~Ag 215 (215)
T PF00702_consen 194 KPGEVAMVGDGVNDAPALKAAG 215 (215)
T ss_dssp TGGGEEEEESSGGHHHHHHHSS
T ss_pred CCCEEEEEccCHHHHHHHHhCc
Confidence 9999999999999999999987
No 84
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.44 E-value=8.7e-13 Score=94.15 Aligned_cols=103 Identities=14% Similarity=0.088 Sum_probs=76.9
Q ss_pred hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-----------------C
Q psy6288 18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-----------------E 80 (166)
Q Consensus 18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-----------------~ 80 (166)
.......+++||+.++|+.|++.|++++|+||+....+...+ +.+|+..+|+.+++++..- .
T Consensus 65 ~~~~~~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~ 143 (188)
T TIGR01489 65 LEVLKSAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVL-EGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCS 143 (188)
T ss_pred HHHHHhCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH-HHcCChhheeEEeccCceECCCCcEEEecCCCCccCc
Confidence 334445789999999999999999999999999988775554 5579999999998764100 0
Q ss_pred ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288 81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS 126 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~ 126 (166)
...+.+++..++.+++++ +++++||||+.+|+.+|+++++.
T Consensus 144 ~~~g~~K~~~~~~~~~~~-----~~~~i~iGD~~~D~~aa~~~d~~ 184 (188)
T TIGR01489 144 CPCGCCKGKVIHKLSEPK-----YQHIIYIGDGVTDVCPAKLSDVV 184 (188)
T ss_pred CCCCCCHHHHHHHHHhhc-----CceEEEECCCcchhchHhcCCcc
Confidence 112233455666554432 78999999999999999998754
No 85
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.43 E-value=7.4e-13 Score=93.39 Aligned_cols=111 Identities=14% Similarity=0.090 Sum_probs=85.0
Q ss_pred HHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec
Q psy6288 33 LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED 112 (166)
Q Consensus 33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD 112 (166)
.++.|++.|++++|+||+....+...+ +.+|+..+|+. .||+|..++.++++++ +++++|++|||
T Consensus 42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l-~~lgi~~~f~~------------~kpkp~~~~~~~~~l~--~~~~ev~~iGD 106 (169)
T TIGR02726 42 GVIVLQLCGIDVAIITSKKSGAVRHRA-EELKIKRFHEG------------IKKKTEPYAQMLEEMN--ISDAEVCYVGD 106 (169)
T ss_pred HHHHHHHCCCEEEEEECCCcHHHHHHH-HHCCCcEEEec------------CCCCHHHHHHHHHHcC--cCHHHEEEECC
Confidence 689999999999999999988776555 55799888842 2788999999999999 99999999999
Q ss_pred CHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC------ChhhhhhhhcCCC
Q psy6288 113 APNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN------SLEEFKPELYGLP 161 (166)
Q Consensus 113 ~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~------~~~~l~~~l~~~~ 161 (166)
+.+|+.+++.+|+..+.-... ......++++.. -+.++.+.+++..
T Consensus 107 ~~nDi~~~~~ag~~~am~nA~---~~lk~~A~~I~~~~~~~g~v~e~~e~il~~~ 158 (169)
T TIGR02726 107 DLVDLSMMKRVGLAVAVGDAV---ADVKEAAAYVTTARGGHGAVREVAELILKAQ 158 (169)
T ss_pred CHHHHHHHHHCCCeEECcCch---HHHHHhCCEEcCCCCCCCHHHHHHHHHHHhc
Confidence 999999999999886655322 223334444443 1456666666443
No 86
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.42 E-value=6.4e-13 Score=95.11 Aligned_cols=109 Identities=19% Similarity=0.134 Sum_probs=84.9
Q ss_pred HHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEe
Q psy6288 32 RLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFE 111 (166)
Q Consensus 32 ~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IG 111 (166)
..++.|++.|++++|+||.....+...+ +.+|+..+|+ + .++++..+..++++++ +++++|+|||
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l-~~lgl~~~f~----g--------~~~k~~~l~~~~~~~g--l~~~ev~~VG 119 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRM-TTLGITHLYQ----G--------QSNKLIAFSDLLEKLA--IAPEQVAYIG 119 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHH-HHcCCceeec----C--------CCcHHHHHHHHHHHhC--CCHHHEEEEC
Confidence 4788999999999999999987775444 5578877763 2 2456899999999999 9999999999
Q ss_pred cCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC------Chhhhhhhhc
Q psy6288 112 DAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN------SLEEFKPELY 158 (166)
Q Consensus 112 D~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~------~~~~l~~~l~ 158 (166)
|+.+|+.+++++|+.. .+... .......+++++. .+.++.++++
T Consensus 120 Ds~~D~~~a~~aG~~~-~v~~~--~~~~~~~a~~v~~~~~g~g~~~el~~~i~ 169 (183)
T PRK09484 120 DDLIDWPVMEKVGLSV-AVADA--HPLLLPRADYVTRIAGGRGAVREVCDLLL 169 (183)
T ss_pred CCHHHHHHHHHCCCeE-ecCCh--hHHHHHhCCEEecCCCCCCHHHHHHHHHH
Confidence 9999999999999984 45322 1223456677775 5778777765
No 87
>KOG3040|consensus
Probab=99.40 E-value=1.4e-12 Score=92.83 Aligned_cols=77 Identities=22% Similarity=0.333 Sum_probs=68.0
Q ss_pred ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCc--c--cccccchhhCChhhhhh
Q psy6288 81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPK--H--RTEAADLVLNSLEEFKP 155 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~--~--~~~~~~~~~~~~~~l~~ 155 (166)
...+||.+.+|+.+++.+| ++|++++||||.. .|+-+|+++||..|.|-+|.... + ....|+.++++|.+...
T Consensus 177 ~vvGKP~~~fFe~al~~~g--v~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~AVd 254 (262)
T KOG3040|consen 177 TVVGKPSPFFFESALQALG--VDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADAVD 254 (262)
T ss_pred EEecCCCHHHHHHHHHhcC--CChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHHHH
Confidence 4559999999999999999 9999999999988 99999999999999999986433 2 45678899999999999
Q ss_pred hhcC
Q psy6288 156 ELYG 159 (166)
Q Consensus 156 ~l~~ 159 (166)
+|++
T Consensus 255 ~I~q 258 (262)
T KOG3040|consen 255 LIIQ 258 (262)
T ss_pred HHHh
Confidence 8874
No 88
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.40 E-value=5.5e-12 Score=88.00 Aligned_cols=122 Identities=18% Similarity=0.173 Sum_probs=95.1
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh--hcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR--HKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~--~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
..++||++.++|+++++.|++++|.|+++.......+.. +..+..+|+..+... ...|.....|.+++...|
T Consensus 101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDtt-----iG~KrE~~SY~kIa~~iG- 174 (229)
T COG4229 101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTT-----IGKKRESQSYAKIAGDIG- 174 (229)
T ss_pred ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeecc-----ccccccchhHHHHHHhcC-
Confidence 468999999999999999999999999997754322221 224555665554433 335777899999999999
Q ss_pred CCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChh
Q psy6288 101 KPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLE 151 (166)
Q Consensus 101 ~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~ 151 (166)
++|.+++|+.|.+..+.+|+.+|+.++++.++...+.-......+++||.
T Consensus 175 -l~p~eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~d~~~~~~~~sf~ 224 (229)
T COG4229 175 -LPPAEILFLSDNPEELKAAAGVGLATGLAVRPGNAPVPDGQGFLVYKSFE 224 (229)
T ss_pred -CCchheEEecCCHHHHHHHHhcchheeeeecCCCCCCCCCcCceeeechh
Confidence 99999999999999999999999999999988755554444455666665
No 89
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.40 E-value=7.5e-12 Score=90.56 Aligned_cols=104 Identities=12% Similarity=0.012 Sum_probs=81.3
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEe--------cCCCCCccCCCCChHHHHHHH
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVL--------GSADPEVKQGKPAPDVFLVAA 95 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~--------~~~~~~~~~~Kp~~~~~~~~~ 95 (166)
..++||+.++|+.++++|++++|+|++....+.. +.+.+|+..+|...+. +...+....++++...++..+
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~-~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~~~~ 164 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKP-LARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALAELL 164 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHH-HHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHHHHH
Confidence 4689999999999999999999999999776654 4566798887755222 110001123456677789999
Q ss_pred HHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288 96 KRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130 (166)
Q Consensus 96 ~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v 130 (166)
++++ +++++|+++||+.+|+.+++.+|.+.+..
T Consensus 165 ~~~~--~~~~~~~~~gDs~~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 165 AEEQ--IDLKDSYAYGDSISDLPLLSLVGHPYVVN 197 (202)
T ss_pred HHcC--CCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence 9999 89999999999999999999999887654
No 90
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.38 E-value=5.2e-12 Score=91.78 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=92.4
Q ss_pred hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCC-C---CCccCCCCChHHHHH
Q psy6288 18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSA-D---PEVKQGKPAPDVFLV 93 (166)
Q Consensus 18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~-~---~~~~~~Kp~~~~~~~ 93 (166)
...+...+++||+.++|+.+++.+ +++|+|++....+. .+.+.+|+..+|...+..+. . +.....+|.+.....
T Consensus 61 ~~~~~~i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~-~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~ 138 (203)
T TIGR02137 61 QEVIATLKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQ-PLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVI 138 (203)
T ss_pred HHHHHhCCCCccHHHHHHHHHhCC-eEEEEeCChHHHHH-HHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHH
Confidence 444455789999999999999975 99999999987664 45566899888863222220 0 001134556665555
Q ss_pred HHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccc-hhhCChhhhhhhhc
Q psy6288 94 AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAAD-LVLNSLEEFKPELY 158 (166)
Q Consensus 94 ~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~-~~~~~~~~l~~~l~ 158 (166)
.+++.+ . +|++|||+.+|+.+++.+|.+.++...+.... ..++ .++.++.++...+.
T Consensus 139 ~l~~~~--~---~~v~vGDs~nDl~ml~~Ag~~ia~~ak~~~~~---~~~~~~~~~~~~~~~~~~~ 196 (203)
T TIGR02137 139 AFKSLY--Y---RVIAAGDSYNDTTMLSEAHAGILFHAPENVIR---EFPQFPAVHTYEDLKREFL 196 (203)
T ss_pred HHHhhC--C---CEEEEeCCHHHHHHHHhCCCCEEecCCHHHHH---hCCCCCcccCHHHHHHHHH
Confidence 556665 3 79999999999999999999999887664222 2333 36778888877664
No 91
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.38 E-value=3.4e-12 Score=98.87 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=80.3
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhh----cCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRH----KDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~----~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
.+++|+.++|+.|++.|+.++|+|++....+...+ +. +++.++|+.+..+ .||++..+..++++++
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l-~~~~~~~~~~~~f~~~~~~--------~~pk~~~i~~~~~~l~- 100 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVF-ERRKDFILQAEDFDARSIN--------WGPKSESLRKIAKKLN- 100 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH-HhCccccCcHHHeeEEEEe--------cCchHHHHHHHHHHhC-
Confidence 57899999999999999999999999988775555 44 5888889887554 3899999999999999
Q ss_pred CCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288 101 KPQPSKCLVFEDAPNGVLGAKAAGMS 126 (166)
Q Consensus 101 ~~~~~~~i~IGD~~~Di~~a~~~G~~ 126 (166)
+++++++||||++.|+.++++++..
T Consensus 101 -i~~~~~vfidD~~~d~~~~~~~lp~ 125 (320)
T TIGR01686 101 -LGTDSFLFIDDNPAERANVKITLPV 125 (320)
T ss_pred -CCcCcEEEECCCHHHHHHHHHHCCC
Confidence 9999999999999999999998764
No 92
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.37 E-value=1.4e-11 Score=92.75 Aligned_cols=97 Identities=20% Similarity=0.228 Sum_probs=77.9
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceE------EecCCCCCccCCCCCh--------
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHV------VLGSADPEVKQGKPAP-------- 88 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v------~~~~~~~~~~~~Kp~~-------- 88 (166)
...+.||+.++++.|+++|++++|+|++....+...+.+ +|+...+..+ +..+ ....++|.|
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~-lgl~~~~~~IvSN~L~f~~d---GvltG~~~P~i~~~~K~ 194 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQ-AGVYHPNVKVVSNFMDFDED---GVLKGFKGPLIHTFNKN 194 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHH-cCCCCcCceEEeeeEEECCC---CeEeCCCCCcccccccH
Confidence 578999999999999999999999999998888666654 5887666666 4444 445557777
Q ss_pred -HHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHc
Q psy6288 89 -DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA 123 (166)
Q Consensus 89 -~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~ 123 (166)
..++...+.++...++++|++|||+.+|+.+|..+
T Consensus 195 ~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~ 230 (277)
T TIGR01544 195 HDVALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV 230 (277)
T ss_pred HHHHHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence 66767778877336899999999999999998776
No 93
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.37 E-value=3.1e-12 Score=104.17 Aligned_cols=94 Identities=15% Similarity=0.120 Sum_probs=77.0
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchh------------hHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHH
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKE------------SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV 93 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~------------~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~ 93 (166)
++||+.+.|+.|++.|++++|+||.... .+ ..+.+.+|+ .|+.+++.+ ...++||.+.++..
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki-~~iL~~lgi--pfdviia~~---~~~~RKP~pGm~~~ 271 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKI-EAIVAKLGV--PFQVFIAIG---AGFYRKPLTGMWDH 271 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHH-HHHHHHcCC--ceEEEEeCC---CCCCCCCCHHHHHH
Confidence 6899999999999999999999998752 23 334455676 388888777 77889999999999
Q ss_pred HHHHcC--CCCCCCceEEEecCHhHHHHHHHcCC
Q psy6288 94 AAKRFD--EKPQPSKCLVFEDAPNGVLGAKAAGM 125 (166)
Q Consensus 94 ~~~~~~--~~~~~~~~i~IGD~~~Di~~a~~~G~ 125 (166)
++++++ ..+++++++||||+..|+.+|+++|-
T Consensus 272 a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~ 305 (526)
T TIGR01663 272 LKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGK 305 (526)
T ss_pred HHHhcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence 999984 12789999999999988877776664
No 94
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.36 E-value=1.1e-11 Score=96.07 Aligned_cols=108 Identities=13% Similarity=0.065 Sum_probs=84.1
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcC-------cccccceEEecCCCCC--------------cc
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKD-------TLKLFHHVVLGSADPE--------------VK 82 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~g-------l~~~fd~v~~~~~~~~--------------~~ 82 (166)
..+.||+.++|+.|+++|++++|+||+....+...+...+| +.++||.|+++...|. .+
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~g 262 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVETG 262 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCCC
Confidence 45699999999999999999999999998877555544336 8999999988863321 00
Q ss_pred CCCCCh------------HHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHH-HcCCeEEEecCC
Q psy6288 83 QGKPAP------------DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAK-AAGMSCVMVPDP 133 (166)
Q Consensus 83 ~~Kp~~------------~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~-~~G~~~i~v~~~ 133 (166)
..++.. .-+....+.++ +.+++++||||.+ +|+.+|+ .+||.+++|...
T Consensus 263 ~~~~~~~~~l~~g~vY~gGn~~~~~~~l~--~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~pE 325 (343)
T TIGR02244 263 SLKWGEVDGLEPGKVYSGGSLKQFHELLK--WRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIPE 325 (343)
T ss_pred cccCCccccccCCCeEeCCCHHHHHHHHC--CCCCcEEEECCcchHHHHhhHHhcCcEEEEEchh
Confidence 011111 22556788889 9999999999999 9999998 899999999764
No 95
>PTZ00445 p36-lilke protein; Provisional
Probab=99.28 E-value=5.2e-11 Score=85.59 Aligned_cols=106 Identities=19% Similarity=0.182 Sum_probs=79.3
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhh--------------HHHHHhhhcCcccccceEEecCCC----C----CccC
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKES--------------FELKTSRHKDTLKLFHHVVLGSAD----P----EVKQ 83 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~--------------~~~~l~~~~gl~~~fd~v~~~~~~----~----~~~~ 83 (166)
+.|.+..+++.|++.|++++|||-++... +....++.-+-+.-...+++..+. + ..+.
T Consensus 76 ~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl 155 (219)
T PTZ00445 76 VTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGL 155 (219)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcc
Confidence 67899999999999999999999877543 112222211111122334433211 0 2477
Q ss_pred CCCChHH--H--HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 84 GKPAPDV--F--LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 84 ~Kp~~~~--~--~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
.||+|+. | +.+++++| +.|++|+||+|+..++++|++.|+.++.+..+
T Consensus 156 ~KPdp~iK~yHle~ll~~~g--l~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~ 207 (219)
T PTZ00445 156 DAPMPLDKSYHLKQVCSDFN--VNPDEILFIDDDMNNCKNALKEGYIALHVTGN 207 (219)
T ss_pred cCCCccchHHHHHHHHHHcC--CCHHHeEeecCCHHHHHHHHHCCCEEEEcCCh
Confidence 8999999 8 99999999 99999999999999999999999999999754
No 96
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.26 E-value=4.3e-11 Score=84.71 Aligned_cols=99 Identities=17% Similarity=0.070 Sum_probs=75.4
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC---------CccCCCCChHHHH
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP---------EVKQGKPAPDVFL 92 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~---------~~~~~Kp~~~~~~ 92 (166)
....++||+.++++.++++|++++|+|++....+... .+.+|+..+|...+..+.++ .......+...+.
T Consensus 70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~-~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~ 148 (177)
T TIGR01488 70 RQVALRPGARELISWLKERGIDTVIVSGGFDFFVEPV-AEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLK 148 (177)
T ss_pred hcCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHH-HHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHH
Confidence 4567899999999999999999999999997766544 45568887776554442110 0112333467888
Q ss_pred HHHHHcCCCCCCCceEEEecCHhHHHHHHHc
Q psy6288 93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA 123 (166)
Q Consensus 93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~ 123 (166)
..+++++ ++++++++|||+.+|+.+++.+
T Consensus 149 ~~~~~~~--~~~~~~~~iGDs~~D~~~~~~a 177 (177)
T TIGR01488 149 ELLEESK--ITLKKIIAVGDSVNDLPMLKLA 177 (177)
T ss_pred HHHHHhC--CCHHHEEEEeCCHHHHHHHhcC
Confidence 8888999 8999999999999999998753
No 97
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.24 E-value=3.5e-11 Score=99.14 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=87.2
Q ss_pred CCccchhHHHHHHHHHHCCC-CEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNI-PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~-~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
...++||+.+.|++|++.|+ +++++||.....+. .+.+.+|+.++|..+. | +.-..++++++
T Consensus 360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~-~i~~~lgi~~~f~~~~------------p--~~K~~~i~~l~-- 422 (536)
T TIGR01512 360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAE-RVARELGIDEVHAELL------------P--EDKLEIVKELR-- 422 (536)
T ss_pred eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHH-HHHHHcCChhhhhccC------------c--HHHHHHHHHHH--
Confidence 46789999999999999999 99999999977664 4455579988773221 1 11245677777
Q ss_pred CCCCceEEEecCHhHHHHHHHcCCeEEEecCCC-CCcccccccchhh--CChhhhhhhh
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT-VPKHRTEAADLVL--NSLEEFKPEL 157 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~-~~~~~~~~~~~~~--~~~~~l~~~l 157 (166)
...++++||||+.+|+.+++++|+ ++.++. ........+|.++ +++.++...+
T Consensus 423 ~~~~~v~~vGDg~nD~~al~~A~v---gia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i 478 (536)
T TIGR01512 423 EKYGPVAMVGDGINDAPALAAADV---GIAMGASGSDVAIETADVVLLNDDLSRLPQAI 478 (536)
T ss_pred hcCCEEEEEeCCHHHHHHHHhCCE---EEEeCCCccHHHHHhCCEEEECCCHHHHHHHH
Confidence 667899999999999999999995 666663 2233445678877 8898887654
No 98
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.23 E-value=2.5e-11 Score=100.37 Aligned_cols=115 Identities=19% Similarity=0.182 Sum_probs=84.9
Q ss_pred CCccchhHHHHHHHHHHCC-CCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 23 GYNLAIGALRLINHLHKHN-IPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g-~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
...++||+.++|++|++.| ++++++||.....+... .+.+|+.++|..+. |+.-..++++++
T Consensus 382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i-~~~lgi~~~f~~~~--------------p~~K~~~v~~l~-- 444 (556)
T TIGR01525 382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAV-AAELGIDEVHAELL--------------PEDKLAIVKELQ-- 444 (556)
T ss_pred cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHH-HHHhCCCeeeccCC--------------HHHHHHHHHHHH--
Confidence 4689999999999999999 99999999998877544 55579987774321 111234666666
Q ss_pred CCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhhhhh
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFKPEL 157 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~~~l 157 (166)
..+++|+||||+.+|+.+++++| +++.++.........+|+++. ++..+...+
T Consensus 445 ~~~~~v~~vGDg~nD~~al~~A~---vgia~g~~~~~~~~~Ad~vi~~~~~~~l~~~i 499 (556)
T TIGR01525 445 EEGGVVAMVGDGINDAPALAAAD---VGIAMGAGSDVAIEAADIVLLNDDLSSLPTAI 499 (556)
T ss_pred HcCCEEEEEECChhHHHHHhhCC---EeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHH
Confidence 56789999999999999999999 566666333334456777766 676666554
No 99
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.23 E-value=1.1e-10 Score=82.05 Aligned_cols=107 Identities=14% Similarity=0.227 Sum_probs=76.5
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc----------cccceEEecCCCCCccCCCCChHHH
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL----------KLFHHVVLGSADPEVKQGKPAPDVF 91 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~----------~~fd~v~~~~~~~~~~~~Kp~~~~~ 91 (166)
....+||++.+.|+.|+++|+++++.|....+.....+++.+++. ++|+..-.+. -.+...+
T Consensus 42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~--------gsK~~Hf 113 (169)
T PF12689_consen 42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYP--------GSKTTHF 113 (169)
T ss_dssp -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESS--------S-HHHHH
T ss_pred CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheec--------CchHHHH
Confidence 457899999999999999999999999776566667777878999 8888865555 2458999
Q ss_pred HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc
Q psy6288 92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH 138 (166)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~ 138 (166)
+.+.++.| ++.++++|+.|..+++...++.|+.++.|..|.+...
T Consensus 114 ~~i~~~tg--I~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~ 158 (169)
T PF12689_consen 114 RRIHRKTG--IPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDE 158 (169)
T ss_dssp HHHHHHH-----GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHH
T ss_pred HHHHHhcC--CChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHH
Confidence 99999999 9999999999999999999999999999999865433
No 100
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.22 E-value=1.2e-11 Score=92.25 Aligned_cols=112 Identities=19% Similarity=0.293 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHH-HHhhhcCccc-ccceEEecCCCCC
Q psy6288 4 SQVLNYVTHVIFDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSAKESFEL-KTSRHKDTLK-LFHHVVLGSADPE 80 (166)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~-~l~~~~gl~~-~fd~v~~~~~~~~ 80 (166)
++++..++.++.|.++.+. ...++||+.++|++|+++|++++++||+++..... ..++.+|+.. +|+.++++. .
T Consensus 2 ~~~~~~~~~~~~D~dG~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~s~---~ 78 (242)
T TIGR01459 2 FDLINDYDVFLLDLWGVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIISSG---E 78 (242)
T ss_pred hhhhhcCCEEEEecccccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEccH---H
Confidence 4555566666777777554 46789999999999999999999999998765431 3345579987 999999987 3
Q ss_pred ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCC
Q psy6288 81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM 125 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~ 125 (166)
... ..+..++++++ .+++++++|||+..|+.....+|.
T Consensus 79 ~~~-----~~l~~~~~~~~--~~~~~~~~vGd~~~d~~~~~~~~~ 116 (242)
T TIGR01459 79 IAV-----QMILESKKRFD--IRNGIIYLLGHLENDIINLMQCYT 116 (242)
T ss_pred HHH-----HHHHhhhhhcc--CCCceEEEeCCcccchhhhcCCCc
Confidence 332 46777778888 889999999999988887766554
No 101
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=99.17 E-value=1.7e-11 Score=86.09 Aligned_cols=98 Identities=9% Similarity=0.005 Sum_probs=83.2
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc-ccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK-LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~-~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...+||+.++|+.|.+. +.++|.|++....+.. +.++++... +|+.+++.+ ++...+|. +.+.++.++ .
T Consensus 41 v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~-il~~ldp~~~~f~~~l~r~---~~~~~~~~---~~K~L~~l~--~ 110 (162)
T TIGR02251 41 VFKRPHVDEFLERVSKW-YELVIFTASLEEYADP-VLDILDRGGKVISRRLYRE---SCVFTNGK---YVKDLSLVG--K 110 (162)
T ss_pred EEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHH-HHHHHCcCCCEEeEEEEcc---ccEEeCCC---EEeEchhcC--C
Confidence 46799999999999987 9999999999887754 556678765 889999888 77666665 678888899 8
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEec
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVP 131 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~ 131 (166)
+++++++|||++.++.++.++|+......
T Consensus 111 ~~~~vIiVDD~~~~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 111 DLSKVIIIDNSPYSYSLQPDNAIPIKSWF 139 (162)
T ss_pred ChhhEEEEeCChhhhccCccCEeecCCCC
Confidence 99999999999999999999999877665
No 102
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.12 E-value=4.1e-10 Score=78.79 Aligned_cols=99 Identities=17% Similarity=0.217 Sum_probs=67.4
Q ss_pred Cccc-hhHHHHHHHHHHCCCCEEEEeCCchh----------hHHHH---HhhhcCcccccceEEecCCCCCccCCCCChH
Q psy6288 24 YNLA-IGALRLINHLHKHNIPFAIATSSAKE----------SFELK---TSRHKDTLKLFHHVVLGSADPEVKQGKPAPD 89 (166)
Q Consensus 24 ~~~~-~g~~~~l~~l~~~g~~i~ivS~~~~~----------~~~~~---l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~ 89 (166)
+.++ |++.+.|++|.+.||+++|+||..-- ....+ +.+.+++. +....+.. ...++||.+.
T Consensus 27 ~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip--~~~~~a~~---~d~~RKP~~G 101 (159)
T PF08645_consen 27 WKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIP--IQVYAAPH---KDPCRKPNPG 101 (159)
T ss_dssp GEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS---EEEEECGC---SSTTSTTSSH
T ss_pred hhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCc--eEEEecCC---CCCCCCCchh
Confidence 4544 58999999999999999999988311 11111 22223332 33334444 4589999999
Q ss_pred HHHHHHHHcCC--CCCCCceEEEecC-----------HhHHHHHHHcCCeE
Q psy6288 90 VFLVAAKRFDE--KPQPSKCLVFEDA-----------PNGVLGAKAAGMSC 127 (166)
Q Consensus 90 ~~~~~~~~~~~--~~~~~~~i~IGD~-----------~~Di~~a~~~G~~~ 127 (166)
|++.++++++. .++.++++||||. .+|...|.++|++.
T Consensus 102 M~~~~~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f 152 (159)
T PF08645_consen 102 MWEFALKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKF 152 (159)
T ss_dssp HHHHHCCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--E
T ss_pred HHHHHHHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCcc
Confidence 99999999982 2489999999996 68999999999974
No 103
>PRK08238 hypothetical protein; Validated
Probab=99.12 E-value=6.5e-10 Score=90.16 Aligned_cols=98 Identities=13% Similarity=0.073 Sum_probs=79.0
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~ 103 (166)
.+++||+.++|++++++|++++++|++....++ .+.+++|+ ||.+++++ .....||++.. +.+.+.++
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~-~i~~~lGl---Fd~Vigsd---~~~~~kg~~K~-~~l~~~l~---- 138 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQ-AVAAHLGL---FDGVFASD---GTTNLKGAAKA-AALVEAFG---- 138 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHH-HHHHHcCC---CCEEEeCC---CccccCCchHH-HHHHHHhC----
Confidence 457899999999999999999999999987664 45566677 89999998 66677776543 34556666
Q ss_pred CCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
.++++++||+.+|+.+++.+| ..+.|+.+.
T Consensus 139 ~~~~~yvGDS~~Dlp~~~~A~-~av~Vn~~~ 168 (479)
T PRK08238 139 ERGFDYAGNSAADLPVWAAAR-RAIVVGASP 168 (479)
T ss_pred ccCeeEecCCHHHHHHHHhCC-CeEEECCCH
Confidence 466899999999999999999 777776653
No 104
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.09 E-value=1e-09 Score=80.25 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=88.1
Q ss_pred hhcC-CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCC-------CCCccCCCCChHHH
Q psy6288 20 LLLG-YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSA-------DPEVKQGKPAPDVF 91 (166)
Q Consensus 20 ~~~~-~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~-------~~~~~~~Kp~~~~~ 91 (166)
.... ..++||+.++++.+++.|++++|+|++....+ ..+.+.+|++..+...+..+. -+....++-+...+
T Consensus 71 ~~~~~~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv-~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l 149 (212)
T COG0560 71 VREEFLRLTPGAEELVAALKAAGAKVVIISGGFTFLV-EPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKAL 149 (212)
T ss_pred HHHhcCcCCccHHHHHHHHHHCCCEEEEEcCChHHHH-HHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHH
Confidence 3334 78999999999999999999999999996544 677787899887765555440 00011123357788
Q ss_pred HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
+..++++| +++++++++||+.+|+..-+.+|.+.+.-..+
T Consensus 150 ~~~~~~~g--~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~~ 189 (212)
T COG0560 150 RELAAELG--IPLEETVAYGDSANDLPMLEAAGLPIAVNPKP 189 (212)
T ss_pred HHHHHHcC--CCHHHeEEEcCchhhHHHHHhCCCCeEeCcCH
Confidence 89999999 89999999999999999999999998877555
No 105
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.08 E-value=2.7e-10 Score=88.26 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=63.6
Q ss_pred ccCCCCChHHHHHHHHHc--------CC---CCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc-c--ccccch
Q psy6288 81 VKQGKPAPDVFLVAAKRF--------DE---KPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH-R--TEAADL 145 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~~~--------~~---~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~-~--~~~~~~ 145 (166)
...+||++.+|+.+++.+ +. ..++++++||||++ +||.+|+++|+.+++|.+|..... . ...|++
T Consensus 229 ~~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~ 308 (321)
T TIGR01456 229 YTLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTL 308 (321)
T ss_pred EEcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCE
Confidence 456999999999988887 31 02457999999999 999999999999999999854433 2 245899
Q ss_pred hhCChhhhhhhhc
Q psy6288 146 VLNSLEEFKPELY 158 (166)
Q Consensus 146 ~~~~~~~l~~~l~ 158 (166)
+++++.++..+|+
T Consensus 309 vv~~l~e~~~~i~ 321 (321)
T TIGR01456 309 IVNDVFDAVTKIL 321 (321)
T ss_pred EECCHHHHHHHhC
Confidence 9999999988764
No 106
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.05 E-value=2.6e-09 Score=74.96 Aligned_cols=108 Identities=24% Similarity=0.229 Sum_probs=76.7
Q ss_pred HHhhhhhhhc---CCccchhHHHHHHHHHHCCC--CEEEEeCCc-------hhhHHHHHhhhcCcccccceEEecCCCCC
Q psy6288 13 VIFDMDGLLL---GYNLAIGALRLINHLHKHNI--PFAIATSSA-------KESFELKTSRHKDTLKLFHHVVLGSADPE 80 (166)
Q Consensus 13 ~~~~~~~~~~---~~~~~~g~~~~l~~l~~~g~--~i~ivS~~~-------~~~~~~~l~~~~gl~~~fd~v~~~~~~~~ 80 (166)
++.|.+..+. ...+.|...+++++|++.+. ++.|+||+. ...+ ..+.+.+|+.- + .
T Consensus 44 li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a-~~~~~~lgIpv----l-~------ 111 (168)
T PF09419_consen 44 LIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERA-EALEKALGIPV----L-R------ 111 (168)
T ss_pred EEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHH-HHHHHhhCCcE----E-E------
Confidence 3444454433 45688999999999999866 499999984 2333 45566666421 1 1
Q ss_pred ccCCCCChHHHHHHHHHcCC---CCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCC
Q psy6288 81 VKQGKPAPDVFLVAAKRFDE---KPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~~~~~---~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~ 134 (166)
....|| ..++.+++.++. ...|++++||||.+ +|+.+|...|+.+|++..|.
T Consensus 112 h~~kKP--~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~gv 167 (168)
T PF09419_consen 112 HRAKKP--GCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDGV 167 (168)
T ss_pred eCCCCC--ccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEEEEecCc
Confidence 123576 555666666651 03599999999999 99999999999999998874
No 107
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=99.04 E-value=1.4e-09 Score=90.23 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=81.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...++||+.++|++|++.|++++++|++....+. .+.+.+|++ +| . + . +| +.-..++++++ .
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~-~ia~~lgi~-~~----~-~----~---~p--~~K~~~v~~l~--~ 464 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAK-AVAKELGIN-VR----A-E----V---LP--DDKAALIKELQ--E 464 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHH-HHHHHcCCc-EE----c-c----C---Ch--HHHHHHHHHHH--H
Confidence 4578999999999999999999999999987664 445557885 22 1 2 1 12 12244556666 5
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhhh
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPEL 157 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~l 157 (166)
++++|+||||+.+|+.+++++|+ ++.++.........+|+++ +++.++...+
T Consensus 465 ~~~~v~~VGDg~nD~~al~~A~v---gia~g~g~~~a~~~Advvl~~~~l~~l~~~i 518 (562)
T TIGR01511 465 KGRVVAMVGDGINDAPALAQADV---GIAIGAGTDVAIEAADVVLMRNDLNDVATAI 518 (562)
T ss_pred cCCEEEEEeCCCccHHHHhhCCE---EEEeCCcCHHHHhhCCEEEeCCCHHHHHHHH
Confidence 67899999999999999999996 3444432333445677776 4777766554
No 108
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.04 E-value=2.7e-10 Score=84.67 Aligned_cols=93 Identities=18% Similarity=0.177 Sum_probs=62.7
Q ss_pred HCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCce-EEEecCH-hH
Q psy6288 39 KHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKC-LVFEDAP-NG 116 (166)
Q Consensus 39 ~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~-i~IGD~~-~D 116 (166)
++|-...++||.+.-.....-....+...+|+.+...........+||++.+|+.++++++ .+++++ +||||++ +|
T Consensus 142 ~~~~~~~i~tN~d~~~~~~~g~~~~~~g~~~~~i~~~~g~~~~~~~KP~~~~~~~~~~~~~--~~~~~~~~~IGD~~~~D 219 (236)
T TIGR01460 142 AEGDVPFIAANRDDLVRLGDGRFRPGAGAIAAGIKELSGREPTVVGKPSPAIYRAALNLLQ--ARPERRDVMVGDNLRTD 219 (236)
T ss_pred hCCCCeEEEECCCCCCCCCCCcEeecchHHHHHHHHHhCceeeeecCCCHHHHHHHHHHhC--CCCccceEEECCCcHHH
Confidence 3453566778855211100001112444444433332211133578999999999999999 888887 9999999 89
Q ss_pred HHHHHHcCCeEEEecCC
Q psy6288 117 VLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 117 i~~a~~~G~~~i~v~~~ 133 (166)
+.+|+++|+.+++|.+|
T Consensus 220 i~~A~~~G~~~i~v~~G 236 (236)
T TIGR01460 220 ILGAKNAGFDTLLVLTG 236 (236)
T ss_pred HHHHHHCCCcEEEEecC
Confidence 99999999999999875
No 109
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.02 E-value=1.4e-09 Score=94.42 Aligned_cols=125 Identities=15% Similarity=0.161 Sum_probs=96.4
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCc----------------cCCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV----------------KQGKPA 87 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~----------------~~~Kp~ 87 (166)
.+++||+.++++.|++.|++++++|+.....+. .+.+..|+...++.++++. +. -...+.
T Consensus 527 Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~-~ia~~~Gi~~~~~~~v~g~---~l~~~~~~~l~~~~~~~~Vfar~~ 602 (884)
T TIGR01522 527 DPPRPGVKEAVTTLITGGVRIIMITGDSQETAV-SIARRLGMPSKTSQSVSGE---KLDAMDDQQLSQIVPKVAVFARAS 602 (884)
T ss_pred CcchhHHHHHHHHHHHCCCeEEEECCCCHHHHH-HHHHHcCCCCCCCceeEhH---HhHhCCHHHHHHHhhcCeEEEECC
Confidence 488999999999999999999999999988774 4556679987776666664 32 223466
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc-cccccchhh--CChhhhhhhh
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVL--NSLEEFKPEL 157 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~-~~~~~~~~~--~~~~~l~~~l 157 (166)
|+--..+.+.++ ...+.+.|+||+.+|+.+.+++++ +++.|....+ ....+|+++ +++..+...+
T Consensus 603 P~~K~~iv~~lq--~~g~~v~mvGDGvND~pAl~~AdV---Gia~g~~g~~va~~aaDivl~dd~~~~i~~~i 670 (884)
T TIGR01522 603 PEHKMKIVKALQ--KRGDVVAMTGDGVNDAPALKLADI---GVAMGQTGTDVAKEAADMILTDDDFATILSAI 670 (884)
T ss_pred HHHHHHHHHHHH--HCCCEEEEECCCcccHHHHHhCCe---eEecCCCcCHHHHHhcCEEEcCCCHHHHHHHH
Confidence 777788888888 677899999999999999999995 5555532222 446778887 6688887654
No 110
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.95 E-value=1.5e-08 Score=67.34 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=99.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..++|+.+.+.|+.|+.. +.++|.|+.....+.. +.+..|+.- +.++.+. ++.+-..+++.++ -
T Consensus 28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~-lae~~gi~~--~rv~a~a----------~~e~K~~ii~eLk--k 91 (152)
T COG4087 28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQ-LAEFVGIPV--ERVFAGA----------DPEMKAKIIRELK--K 91 (152)
T ss_pred CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHH-HHHHcCCce--eeeeccc----------CHHHHHHHHHHhc--C
Confidence 368999999999999998 9999999998777744 445456532 3444443 3677789999999 6
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCCC
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLPP 162 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 162 (166)
..+.|+||||+.+|+.+-+++-...+.+..+.........+|+++.+..++...+..+..
T Consensus 92 ~~~k~vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e~ldl~~~~~~ 151 (152)
T COG4087 92 RYEKVVMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEILDLLKDTSE 151 (152)
T ss_pred CCcEEEEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHHHHHHhhcccc
Confidence 779999999999999999999888777776555555667889999999999998877653
No 111
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.90 E-value=1.2e-08 Score=88.32 Aligned_cols=116 Identities=17% Similarity=0.129 Sum_probs=84.7
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..+++||+.+.|++|++.|++++++|+.....+. .+.+.+|+.++|.. - . |+.-..++++++ .
T Consensus 648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~-~ia~~lgi~~~~~~----~--------~--p~~K~~~i~~l~--~ 710 (834)
T PRK10671 648 RDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTAN-AIAKEAGIDEVIAG----V--------L--PDGKAEAIKRLQ--S 710 (834)
T ss_pred cCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHH-HHHHHcCCCEEEeC----C--------C--HHHHHHHHHHHh--h
Confidence 4578999999999999999999999999977664 45566788765522 1 1 233456778888 7
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhhhhc
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~~l~ 158 (166)
.+++++||||+.+|+.+++.+|+ ++.+|..... .........+++..+...+.
T Consensus 711 ~~~~v~~vGDg~nD~~al~~Agv---gia~g~g~~~a~~~ad~vl~~~~~~~i~~~i~ 765 (834)
T PRK10671 711 QGRQVAMVGDGINDAPALAQADV---GIAMGGGSDVAIETAAITLMRHSLMGVADALA 765 (834)
T ss_pred cCCEEEEEeCCHHHHHHHHhCCe---eEEecCCCHHHHHhCCEEEecCCHHHHHHHHH
Confidence 78999999999999999999999 3344432332 22334456677887776653
No 112
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=98.74 E-value=8e-08 Score=71.04 Aligned_cols=142 Identities=14% Similarity=0.064 Sum_probs=94.1
Q ss_pred hhhhhhhcCCccchhHHHHHHHH--HHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCC----C---------
Q psy6288 15 FDMDGLLLGYNLAIGALRLINHL--HKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSAD----P--------- 79 (166)
Q Consensus 15 ~~~~~~~~~~~~~~g~~~~l~~l--~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~----~--------- 79 (166)
.++...+...++.||+.++++.+ ++.|+.++|+|.+..-.++.- +++.|+...|+.|++.... +
T Consensus 61 ~~I~~~l~~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~i-L~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~ 139 (234)
T PF06888_consen 61 EDIRDALRSIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETI-LEHHGLRDCFSEIFTNPACFDADGRLRVRPYHS 139 (234)
T ss_pred HHHHHHHHcCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHH-HHhCCCccccceEEeCCceecCCceEEEeCccC
Confidence 34455666799999999999999 457999999999986666544 5667999999888776200 0
Q ss_pred -CccCCCC---ChHHHHHHHHHc---CCCCCCCceEEEecCHhHHHHHHHcCCe-EEEecCCCCCcc------ccccc-c
Q psy6288 80 -EVKQGKP---APDVFLVAAKRF---DEKPQPSKCLVFEDAPNGVLGAKAAGMS-CVMVPDPTVPKH------RTEAA-D 144 (166)
Q Consensus 80 -~~~~~Kp---~~~~~~~~~~~~---~~~~~~~~~i~IGD~~~Di~~a~~~G~~-~i~v~~~~~~~~------~~~~~-~ 144 (166)
.+..+-| +...++..++.. | ...++++||||+.+|+..+.+.+-. .++.-.++.-.. ..-.+ -
T Consensus 140 h~C~~C~~NmCK~~il~~~~~~~~~~g--~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R~~~~l~~~i~~~~~~~~a~v 217 (234)
T PF06888_consen 140 HGCSLCPPNMCKGKILERLLQEQAQRG--VPYDRVIYIGDGRNDFCPALRLRPRDVVFPRKGYPLHKLIQKNPGEVKAEV 217 (234)
T ss_pred CCCCcCCCccchHHHHHHHHHHHhhcC--CCcceEEEECCCCCCcCcccccCCCCEEecCCCChHHHHHhcCCCcceeEE
Confidence 0111111 245566666663 5 6789999999999999999998775 445444442221 11122 2
Q ss_pred hhhCChhhhhhhhcC
Q psy6288 145 LVLNSLEEFKPELYG 159 (166)
Q Consensus 145 ~~~~~~~~l~~~l~~ 159 (166)
...++=.|+...|++
T Consensus 218 ~~W~~g~~i~~~l~~ 232 (234)
T PF06888_consen 218 VPWSSGEEILEILLQ 232 (234)
T ss_pred EecCCHHHHHHHHHh
Confidence 345666666666554
No 113
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=98.74 E-value=1.9e-08 Score=68.86 Aligned_cols=83 Identities=19% Similarity=0.191 Sum_probs=71.0
Q ss_pred HHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec
Q psy6288 33 LINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED 112 (166)
Q Consensus 33 ~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD 112 (166)
-|+.|.+.|++++|+|+...+.++.+..+ +|+...| -+- +.+...|+.++++++ +++++|.||||
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~-LGI~~~~----qG~--------~dK~~a~~~L~~~~~--l~~e~~ayiGD 107 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKD-LGIKHLY----QGI--------SDKLAAFEELLKKLN--LDPEEVAYVGD 107 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHH-cCCceee----ech--------HhHHHHHHHHHHHhC--CCHHHhhhhcC
Confidence 58899999999999999998888888766 6997655 111 334789999999999 99999999999
Q ss_pred CHhHHHHHHHcCCeEEEe
Q psy6288 113 APNGVLGAKAAGMSCVMV 130 (166)
Q Consensus 113 ~~~Di~~a~~~G~~~i~v 130 (166)
..+|+....++|++...-
T Consensus 108 D~~Dlpvm~~vGls~a~~ 125 (170)
T COG1778 108 DLVDLPVMEKVGLSVAVA 125 (170)
T ss_pred ccccHHHHHHcCCccccc
Confidence 999999999999986644
No 114
>KOG1615|consensus
Probab=98.67 E-value=1.1e-07 Score=67.34 Aligned_cols=125 Identities=10% Similarity=0.096 Sum_probs=81.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc--ccceEEecCCCC---------CccCCCCChHHH
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK--LFHHVVLGSADP---------EVKQGKPAPDVF 91 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~--~fd~v~~~~~~~---------~~~~~Kp~~~~~ 91 (166)
...+-||++++..+|++.|.+++++|++.+..+. .+...+|+.. .|...+--+.++ ....+.-+++.+
T Consensus 86 k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~-~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i 164 (227)
T KOG1615|consen 86 KPTLTPGIRELVSRLHARGTQVYLISGGFRQLIE-PVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVI 164 (227)
T ss_pred CCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHH-HHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHH
Confidence 4678999999999999999999999999988774 4455568764 333221111000 111122346677
Q ss_pred HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc--cccccchhhCChhhhhh
Q psy6288 92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLVLNSLEEFKP 155 (166)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~--~~~~~~~~~~~~~~l~~ 155 (166)
..+.+ + .....++||||+.+|+++..- .-+++..|..... -...+.+.+++|..|..
T Consensus 165 ~~lrk--~--~~~~~~~mvGDGatDlea~~p---a~afi~~~g~~~r~~vk~nak~~~~~f~~L~~ 223 (227)
T KOG1615|consen 165 ALLRK--N--YNYKTIVMVGDGATDLEAMPP---ADAFIGFGGNVIREGVKANAKWYVTDFYVLGG 223 (227)
T ss_pred HHHHh--C--CChheeEEecCCccccccCCc---hhhhhccCCceEcHhhHhccHHHHHHHHHHcc
Confidence 77666 5 679999999999999998765 2233444433222 33456677777766543
No 115
>PLN02645 phosphoglycolate phosphatase
Probab=98.64 E-value=1.2e-07 Score=73.32 Aligned_cols=109 Identities=16% Similarity=0.129 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhhhhhhcC-CccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceEEecCCCCCc
Q psy6288 6 VLNYVTHVIFDMDGLLLG-YNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLGSADPEV 81 (166)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~~~~~~~ 81 (166)
++..++.++.|+++.+.. ..++||+.++|++|+++|++++++||++... ...++. .+|+...++.|+++. .
T Consensus 24 ~~~~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~-~lGi~~~~~~I~ts~---~- 98 (311)
T PLN02645 24 LIDSVETFIFDCDGVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFE-SLGLNVTEEEIFSSS---F- 98 (311)
T ss_pred HHHhCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHH-HCCCCCChhhEeehH---H-
Confidence 333344467778886663 5689999999999999999999999988333 334443 468887777777765 1
Q ss_pred cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288 82 KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM 129 (166)
Q Consensus 82 ~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~ 129 (166)
.....+++.+ ....+.++++++..+...++++|+.++.
T Consensus 99 --------~~~~~l~~~~--~~~~~~V~viG~~~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 99 --------AAAAYLKSIN--FPKDKKVYVIGEEGILEELELAGFQYLG 136 (311)
T ss_pred --------HHHHHHHhhc--cCCCCEEEEEcCHHHHHHHHHCCCEEec
Confidence 3445555555 4445568888899999999999998764
No 116
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.64 E-value=7.1e-08 Score=72.78 Aligned_cols=113 Identities=15% Similarity=0.116 Sum_probs=70.4
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCch----hhHHHHHhhhcCccc---ccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAK----ESFELKTSRHKDTLK---LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD 99 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~----~~~~~~l~~~~gl~~---~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 99 (166)
++++.++++.++..+..+.++++... ......+.+.+++.. .++.+ + -....-.++.+++.+++.++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~---e---i~~~~~~K~~~l~~l~~~~g 212 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQV---D---IARKGNSKGKRLTQWVEAQG 212 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceE---E---EecCCCChHHHHHHHHHHcC
Confidence 56677777777777777777776542 112223333334331 11111 1 11112235789999999999
Q ss_pred CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCCh
Q psy6288 100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSL 150 (166)
Q Consensus 100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~ 150 (166)
++++++++|||+.+|+.+++.+|+. +.+ +.........+++++.+-
T Consensus 213 --i~~~e~i~~GD~~NDi~m~~~ag~~-vam--gna~~~lk~~Ad~v~~~n 258 (272)
T PRK10530 213 --WSMKNVVAFGDNFNDISMLEAAGLG-VAM--GNADDAVKARADLVIGDN 258 (272)
T ss_pred --CCHHHeEEeCCChhhHHHHHhcCce-EEe--cCchHHHHHhCCEEEecC
Confidence 9999999999999999999999973 333 333333445667766543
No 117
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.60 E-value=3.7e-07 Score=78.11 Aligned_cols=113 Identities=16% Similarity=0.062 Sum_probs=76.7
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..+++||+.+.|++|++.|++++++|+.....+. .+.+.+|+..++. . . |+--..++++++ .
T Consensus 566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~-~ia~~lgi~~~~~-----~--------~--p~~K~~~v~~l~--~ 627 (741)
T PRK11033 566 QDTLRADARQAISELKALGIKGVMLTGDNPRAAA-AIAGELGIDFRAG-----L--------L--PEDKVKAVTELN--Q 627 (741)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHcCCCeecC-----C--------C--HHHHHHHHHHHh--c
Confidence 3589999999999999999999999999977664 5556579863321 1 1 122233556666 2
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccch--hhCChhhhhhhh
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADL--VLNSLEEFKPEL 157 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~--~~~~~~~l~~~l 157 (166)
..+++||||+.+|..+.+.+++ ++..+.........+|. ..+++..|...+
T Consensus 628 -~~~v~mvGDgiNDapAl~~A~v---gia~g~~~~~a~~~adivl~~~~l~~l~~~i 680 (741)
T PRK11033 628 -HAPLAMVGDGINDAPAMKAASI---GIAMGSGTDVALETADAALTHNRLRGLAQMI 680 (741)
T ss_pred -CCCEEEEECCHHhHHHHHhCCe---eEEecCCCHHHHHhCCEEEecCCHHHHHHHH
Confidence 3689999999999999999994 44444322222233443 446677766543
No 118
>KOG2630|consensus
Probab=98.57 E-value=8e-07 Score=64.56 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=90.8
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhc---C----cccccceEEecCCCCCccCCCCChHHHHHHH
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK---D----TLKLFHHVVLGSADPEVKQGKPAPDVFLVAA 95 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~---g----l~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~ 95 (166)
....++++..+++.++..|++++|.|+++.... +.+..+- . +..|||.- ...|-..+.|..+.
T Consensus 121 k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~Aq-Kllfg~s~~gdl~~y~~gyfDt~---------iG~K~e~~sy~~I~ 190 (254)
T KOG2630|consen 121 KAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQ-KLLFGYSDAGDLRKYISGYFDTT---------IGLKVESQSYKKIG 190 (254)
T ss_pred cccccchhHHHHHHHhhcCceEEEEcCCcHHHH-HHHHcccCcchHHHHhhhhhhcc---------ccceehhHHHHHHH
Confidence 357899999999999999999999999997755 3332221 1 23455432 12466788999999
Q ss_pred HHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCccc-cccc-chhhCChhhhh
Q psy6288 96 KRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR-TEAA-DLVLNSLEEFK 154 (166)
Q Consensus 96 ~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~-~~~~-~~~~~~~~~l~ 154 (166)
+..+ .++.+++|+-|.+....+|+.+|+.+.++.++.+.... .+.. -.++.+|..|.
T Consensus 191 ~~Ig--~s~~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l~ 249 (254)
T KOG2630|consen 191 HLIG--KSPREILFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEILE 249 (254)
T ss_pred HHhC--CChhheEEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhhh
Confidence 9999 99999999999999999999999999999998766542 2222 23566766554
No 119
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=6e-07 Score=63.17 Aligned_cols=100 Identities=13% Similarity=0.191 Sum_probs=69.1
Q ss_pred hhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc--ccc--------------eEEecCCCCC
Q psy6288 17 MDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK--LFH--------------HVVLGSADPE 80 (166)
Q Consensus 17 ~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~--~fd--------------~v~~~~~~~~ 80 (166)
+..++....+.||.+++++++++++++++|+|++....+...+.+..|-+. ..| .+...+ +..
T Consensus 65 le~llk~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~-ds~ 143 (220)
T COG4359 65 LEFLLKDIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTD-DSQ 143 (220)
T ss_pred HHHHHhhcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCC-ccc
Confidence 334445689999999999999999999999999998877666555433211 111 112222 112
Q ss_pred ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCC
Q psy6288 81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM 125 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~ 125 (166)
.+..| ...++++. -.++.++|+||+.+|+.+|+.+..
T Consensus 144 fG~dK------~~vI~~l~--e~~e~~fy~GDsvsDlsaaklsDl 180 (220)
T COG4359 144 FGHDK------SSVIHELS--EPNESIFYCGDSVSDLSAAKLSDL 180 (220)
T ss_pred cCCCc------chhHHHhh--cCCceEEEecCCcccccHhhhhhh
Confidence 34445 24556666 567789999999999999998754
No 120
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=98.55 E-value=7.2e-07 Score=67.29 Aligned_cols=88 Identities=14% Similarity=0.111 Sum_probs=65.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHH--HHHhhhcCccccc-ceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFE--LKTSRHKDTLKLF-HHVVLGSADPEVKQGKPAPDVFLVAAKRFD 99 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~--~~l~~~~gl~~~f-d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 99 (166)
...++||+.++|+.|+++|++++++||....... ...++.+|+..++ +.++..+ . .++++.....+.+.++
T Consensus 116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~~d~lllr~---~---~~~K~~rr~~I~~~y~ 189 (266)
T TIGR01533 116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQADEEHLLLKK---D---KSSKESRRQKVQKDYE 189 (266)
T ss_pred CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCCCCcceEEeCC---C---CCCcHHHHHHHHhcCC
Confidence 4678999999999999999999999998743322 2333446887644 5666554 2 2456778888888888
Q ss_pred CCCCCCceEEEecCHhHHHHHHH
Q psy6288 100 EKPQPSKCLVFEDAPNGVLGAKA 122 (166)
Q Consensus 100 ~~~~~~~~i~IGD~~~Di~~a~~ 122 (166)
+ +++|||...|+..+..
T Consensus 190 --I----vl~vGD~~~Df~~~~~ 206 (266)
T TIGR01533 190 --I----VLLFGDNLLDFDDFFY 206 (266)
T ss_pred --E----EEEECCCHHHhhhhhc
Confidence 6 8999999999976433
No 121
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.54 E-value=3.5e-07 Score=79.90 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=87.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc----cceEEecCCC-------------CCccCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL----FHHVVLGSAD-------------PEVKQGK 85 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~----fd~v~~~~~~-------------~~~~~~K 85 (166)
..+++|++.+.++.|++.|++++++|+.....+. .+.+..|+... ....+++..- ...-.+.
T Consensus 535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~~~tA~-~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar 613 (917)
T TIGR01116 535 LDPPRPEVADAIEKCRTAGIRVIMITGDNKETAE-AICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSR 613 (917)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEecCCCHHHHH-HHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEe
Confidence 4588999999999999999999999999877664 55555677431 1112222100 0011223
Q ss_pred CChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC--hhhhhhhh
Q psy6288 86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS--LEEFKPEL 157 (166)
Q Consensus 86 p~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~--~~~l~~~l 157 (166)
-.|+--.++.+.++ ...+.+.|+||+.+|+.+.+++++. +.+..+ .......+|+++.+ |..+...+
T Consensus 614 ~~P~~K~~iV~~lq--~~g~~va~iGDG~ND~~alk~AdVG-ia~g~g--~~~ak~aAD~vl~dd~f~~i~~~i 682 (917)
T TIGR01116 614 VEPSHKSELVELLQ--EQGEIVAMTGDGVNDAPALKKADIG-IAMGSG--TEVAKEASDMVLADDNFATIVAAV 682 (917)
T ss_pred cCHHHHHHHHHHHH--hcCCeEEEecCCcchHHHHHhCCee-EECCCC--cHHHHHhcCeEEccCCHHHHHHHH
Confidence 33555577777777 6678899999999999999999993 333333 22244567888766 88877765
No 122
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.51 E-value=4.3e-07 Score=60.45 Aligned_cols=93 Identities=14% Similarity=0.140 Sum_probs=68.3
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc---
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF--- 98 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~--- 98 (166)
.+..++|.+++++++++++|+.+..+|-+....+ .+.++++++..||+.++... .... -.|+.+++.+.
T Consensus 38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA-~~aLral~~~~yFhy~VieP---hP~K----~~ML~~llr~i~~e 109 (164)
T COG4996 38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKA-IKALRALDLLQYFHYIVIEP---HPYK----FLMLSQLLREINTE 109 (164)
T ss_pred eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHH-HHHHHHhchhhhEEEEEecC---CChh----HHHHHHHHHHHHHh
Confidence 3568999999999999999999999999986655 44457789999999988866 2222 23444444443
Q ss_pred -CCCCCCCceEEEecCHhHHHHHHH
Q psy6288 99 -DEKPQPSKCLVFEDAPNGVLGAKA 122 (166)
Q Consensus 99 -~~~~~~~~~i~IGD~~~Di~~a~~ 122 (166)
+..+.|++++|++|.---+.-.++
T Consensus 110 r~~~ikP~~Ivy~DDR~iH~~~Iwe 134 (164)
T COG4996 110 RNQKIKPSEIVYLDDRRIHFGNIWE 134 (164)
T ss_pred hccccCcceEEEEecccccHHHHHH
Confidence 344899999999997643443333
No 123
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=98.45 E-value=1.5e-06 Score=69.95 Aligned_cols=108 Identities=17% Similarity=0.133 Sum_probs=69.3
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhc--------CcccccceEEecCCCCC----------------
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK--------DTLKLFHHVVLGSADPE---------------- 80 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~--------gl~~~fd~v~~~~~~~~---------------- 80 (166)
...|.+..+|+.|+++|.+++++||+...-......-.+ .+.++||.|+.....|.
T Consensus 183 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g 262 (448)
T PF05761_consen 183 HKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETG 262 (448)
T ss_dssp E--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTS
T ss_pred cCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCC
Confidence 346889999999999999999999998765543333233 35689999987742110
Q ss_pred -ccCC------CC----ChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHc-CCeEEEecCCC
Q psy6288 81 -VKQG------KP----APDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAA-GMSCVMVPDPT 134 (166)
Q Consensus 81 -~~~~------Kp----~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~-G~~~i~v~~~~ 134 (166)
.... ++ ...-...+.+-++ +...++++|||++ .|+..++.. |+.+++|...-
T Consensus 263 ~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~--~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~EL 327 (448)
T PF05761_consen 263 KLKWGKYVGPLEKGKVYSGGNWDQLHKLLG--WRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIPEL 327 (448)
T ss_dssp SEECS---SS--TC-EEEE--HHHHHHHCT----GGGEEEEESSTTTTHHHHHHHH-SEEEEE-TTH
T ss_pred ccccccccccccCCCEeecCCHHHHHHHHc--cCCCeEEEECCchhhhhhhhccccceEEEEEehhh
Confidence 0000 11 1123556777788 8899999999999 999999887 99999997763
No 124
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.44 E-value=6.8e-07 Score=67.76 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=59.4
Q ss_pred HHhhhhhhhcCC----cc-chhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCC
Q psy6288 13 VIFDMDGLLLGY----NL-AIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87 (166)
Q Consensus 13 ~~~~~~~~~~~~----~~-~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~ 87 (166)
...|+++.+-.. ++ .||+.++|++|+++|++++|+|++.+..+...+ +.+|+..+|+.+++++ +....||.
T Consensus 129 IvFDLDgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L-~~lGLd~YFdvIIs~G---dv~~~kp~ 204 (301)
T TIGR01684 129 VVFDLDSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESM-RKVKLDRYFDIIISGG---HKAEEYST 204 (301)
T ss_pred EEEecCCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-HHcCCCcccCEEEECC---ccccCCCC
Confidence 345566644422 23 499999999999999999999999999886655 5579999999999998 88888887
Q ss_pred hHHH
Q psy6288 88 PDVF 91 (166)
Q Consensus 88 ~~~~ 91 (166)
++..
T Consensus 205 ~e~~ 208 (301)
T TIGR01684 205 MSTE 208 (301)
T ss_pred cccc
Confidence 7543
No 125
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=98.42 E-value=7.9e-07 Score=63.46 Aligned_cols=88 Identities=16% Similarity=0.148 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCc------cCCC----CChHHHHHH---
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV------KQGK----PAPDVFLVA--- 94 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~------~~~K----p~~~~~~~~--- 94 (166)
|++.++|+.++++|++++|+|++....+. .+.+.+|+...+ +++.....+. .... -+...++.+
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~-~~~~~~~i~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~ 168 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIE-PIAERLGIDDDN--VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIR 168 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHH-HHHHHTTSSEGG--EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHH-HHHHHcCCCceE--EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHH
Confidence 45559999999999999999999877664 444556776522 2222200000 0000 135555555
Q ss_pred HHHcCCCCCCCceEEEecCHhHHHHHH
Q psy6288 95 AKRFDEKPQPSKCLVFEDAPNGVLGAK 121 (166)
Q Consensus 95 ~~~~~~~~~~~~~i~IGD~~~Di~~a~ 121 (166)
... + .+..++++|||+.+|+.+++
T Consensus 169 ~~~-~--~~~~~~~~iGDs~~D~~~lr 192 (192)
T PF12710_consen 169 DEE-D--IDPDRVIAIGDSINDLPMLR 192 (192)
T ss_dssp HHH-T--HTCCEEEEEESSGGGHHHHH
T ss_pred hhc-C--CCCCeEEEEECCHHHHHHhC
Confidence 334 7 78999999999999999875
No 126
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.33 E-value=5.3e-06 Score=53.65 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=60.4
Q ss_pred hhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCchh---hHHHHHhhhcCcccccceEEecCCCCCccCCCCChHH
Q psy6288 15 FDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSAKE---SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDV 90 (166)
Q Consensus 15 ~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~---~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~ 90 (166)
.|+++.+. ...++||+.++|++|+++|++++++||++.. ....++ +.+|+.--.+.++++. ...
T Consensus 3 ~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~-----------~~~ 70 (101)
T PF13344_consen 3 FDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSG-----------MAA 70 (101)
T ss_dssp EESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHH-----------HHH
T ss_pred EeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChH-----------HHH
Confidence 35566554 4679999999999999999999999999633 344455 3468876557777765 233
Q ss_pred HHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCC
Q psy6288 91 FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM 125 (166)
Q Consensus 91 ~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~ 125 (166)
...+.+..+ ..+++++|-. ......+++|+
T Consensus 71 ~~~l~~~~~----~~~v~vlG~~-~l~~~l~~~G~ 100 (101)
T PF13344_consen 71 AEYLKEHKG----GKKVYVLGSD-GLREELREAGF 100 (101)
T ss_dssp HHHHHHHTT----SSEEEEES-H-HHHHHHHHTTE
T ss_pred HHHHHhcCC----CCEEEEEcCH-HHHHHHHHcCC
Confidence 333333333 7788888865 44556666664
No 127
>PRK11590 hypothetical protein; Provisional
Probab=98.21 E-value=5.7e-05 Score=55.16 Aligned_cols=102 Identities=6% Similarity=-0.109 Sum_probs=66.3
Q ss_pred CccchhHHHHH-HHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-Ccc-C-CCCC--hHHHHHHHHH
Q psy6288 24 YNLAIGALRLI-NHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVK-Q-GKPA--PDVFLVAAKR 97 (166)
Q Consensus 24 ~~~~~g~~~~l-~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-~~~-~-~Kp~--~~~~~~~~~~ 97 (166)
..++||+.+.| +.+++.|++++|+||+....+. .+.+.+|+.. .+.+++.+-.- ..+ . +.+. .+=...+.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~-~il~~l~~~~-~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~~~ 171 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVE-QVYFDTPWLP-RVNLIASQMQRRYGGWVLTLRCLGHEKVAQLERK 171 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHH-HHHHHccccc-cCceEEEEEEEEEccEECCccCCChHHHHHHHHH
Confidence 46799999999 6788899999999999977664 4445456422 23333332000 000 0 1111 2223445555
Q ss_pred cCCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288 98 FDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM 129 (166)
Q Consensus 98 ~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~ 129 (166)
++ .+.+.+.+-|||.+|+..-.-+|-+.+.
T Consensus 172 ~~--~~~~~~~aY~Ds~~D~pmL~~a~~~~~v 201 (211)
T PRK11590 172 IG--TPLRLYSGYSDSKQDNPLLYFCQHRWRV 201 (211)
T ss_pred hC--CCcceEEEecCCcccHHHHHhCCCCEEE
Confidence 67 6778889999999999999999876554
No 128
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.20 E-value=4.3e-06 Score=70.88 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=69.1
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
...+.|++.+.++.|++.|+++.++|+.....+ ..+.+.+|+++++..+. |+--....++++ .
T Consensus 535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A-~~iA~~lGId~v~Aell--------------PedK~~~V~~l~--~ 597 (713)
T COG2217 535 ADELRPDAKEAIAALKALGIKVVMLTGDNRRTA-EAIAKELGIDEVRAELL--------------PEDKAEIVRELQ--A 597 (713)
T ss_pred eCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHH-HHHHHHcChHhheccCC--------------cHHHHHHHHHHH--h
Confidence 468999999999999999999999999997766 45556679977663322 334466677777 5
Q ss_pred CCCceEEEecCHhHHHHHHHcCCe
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMS 126 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~ 126 (166)
....+.||||+.||..+-..+-+.
T Consensus 598 ~g~~VamVGDGINDAPALA~AdVG 621 (713)
T COG2217 598 EGRKVAMVGDGINDAPALAAADVG 621 (713)
T ss_pred cCCEEEEEeCCchhHHHHhhcCee
Confidence 668999999999999988887664
No 129
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.19 E-value=9.1e-06 Score=68.64 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=67.8
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~ 103 (166)
.+++|++.+.+++|++.|++++++|+.....+. .+.+.+|+.++| ... . |+--..+.+.++ -.
T Consensus 445 D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~-~iA~~lGI~~v~----a~~--------~--PedK~~~v~~lq--~~ 507 (675)
T TIGR01497 445 DIVKGGIKERFAQLRKMGIKTIMITGDNRLTAA-AIAAEAGVDDFI----AEA--------T--PEDKIALIRQEQ--AE 507 (675)
T ss_pred ccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHH-HHHHHcCCCEEE----cCC--------C--HHHHHHHHHHHH--Hc
Confidence 488999999999999999999999999977664 555557986644 211 2 333444555555 44
Q ss_pred CCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288 104 PSKCLVFEDAPNGVLGAKAAGMSCVM 129 (166)
Q Consensus 104 ~~~~i~IGD~~~Di~~a~~~G~~~i~ 129 (166)
...+.|+||+.+|..+-+++++....
T Consensus 508 g~~VamvGDG~NDapAL~~AdvGiAm 533 (675)
T TIGR01497 508 GKLVAMTGDGTNDAPALAQADVGVAM 533 (675)
T ss_pred CCeEEEECCCcchHHHHHhCCEeEEe
Confidence 56799999999999999999987554
No 130
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.17 E-value=1.4e-05 Score=67.53 Aligned_cols=89 Identities=9% Similarity=0.065 Sum_probs=70.8
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..+++|++.+.+++|++.|+++.++|+.....+ ..+.+.+|+.++| . + -.|+--..+.++++ .
T Consensus 439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA-~aIA~elGI~~v~----A-~---------~~PedK~~iV~~lQ--~ 501 (673)
T PRK14010 439 KDVIKDGLVERFRELREMGIETVMCTGDNELTA-ATIAKEAGVDRFV----A-E---------CKPEDKINVIREEQ--A 501 (673)
T ss_pred ecCCcHHHHHHHHHHHHCCCeEEEECCCCHHHH-HHHHHHcCCceEE----c-C---------CCHHHHHHHHHHHH--h
Confidence 348999999999999999999999999997776 4555657997644 1 1 13566677777777 5
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
..+.+.|+||+.||..+-+++.+...
T Consensus 502 ~G~~VaMtGDGvNDAPALa~ADVGIA 527 (673)
T PRK14010 502 KGHIVAMTGDGTNDAPALAEANVGLA 527 (673)
T ss_pred CCCEEEEECCChhhHHHHHhCCEEEE
Confidence 66789999999999999999987533
No 131
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.15 E-value=2.5e-05 Score=57.43 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS 149 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~ 149 (166)
+...++.+++.++ ++++++++|||+.+|+.+++.+|...+ +... .......++++..+
T Consensus 158 Kg~al~~l~~~~~--i~~~~~i~~GD~~NDi~m~~~ag~~va-m~Na--~~~vk~~a~~v~~~ 215 (230)
T PRK01158 158 KGTGLKKLAELMG--IDPEEVAAIGDSENDLEMFEVAGFGVA-VANA--DEELKEAADYVTEK 215 (230)
T ss_pred hHHHHHHHHHHhC--CCHHHEEEECCchhhHHHHHhcCceEE-ecCc--cHHHHHhcceEecC
Confidence 4667788888888 899999999999999999999998653 4333 12233445555544
No 132
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.12 E-value=1.7e-05 Score=67.15 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=69.8
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~ 103 (166)
.++.||+.+.+++|++.|+++.++|+.....+ ..+.+..|++++| ... .|+--..+.++++ -.
T Consensus 444 D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA-~aIA~elGId~v~----A~~----------~PedK~~iV~~lQ--~~ 506 (679)
T PRK01122 444 DIVKPGIKERFAELRKMGIKTVMITGDNPLTA-AAIAAEAGVDDFL----AEA----------TPEDKLALIRQEQ--AE 506 (679)
T ss_pred ccCchhHHHHHHHHHHCCCeEEEECCCCHHHH-HHHHHHcCCcEEE----ccC----------CHHHHHHHHHHHH--Hc
Confidence 47899999999999999999999999997766 4555667996643 211 2555566677776 55
Q ss_pred CCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288 104 PSKCLVFEDAPNGVLGAKAAGMSCVM 129 (166)
Q Consensus 104 ~~~~i~IGD~~~Di~~a~~~G~~~i~ 129 (166)
..-+.|+||+.||..+-+++.+....
T Consensus 507 G~~VaMtGDGvNDAPALa~ADVGIAM 532 (679)
T PRK01122 507 GRLVAMTGDGTNDAPALAQADVGVAM 532 (679)
T ss_pred CCeEEEECCCcchHHHHHhCCEeEEe
Confidence 67799999999999999999876443
No 133
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=98.07 E-value=1.1e-05 Score=56.26 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=60.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc-ccc-ceEEecCCCCCccCCCCChHHHHHHH-HHcC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL-KLF-HHVVLGSADPEVKQGKPAPDVFLVAA-KRFD 99 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~-~~f-d~v~~~~~~~~~~~~Kp~~~~~~~~~-~~~~ 99 (166)
...++||+.++|++|++. +.++|+|++.+..+.. +.+.++.. .+| +.+++.+ ++. .+. .+-+ .-++
T Consensus 56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~-vl~~ldp~~~~F~~ri~~rd---~~~--~~~----~KdL~~i~~ 124 (156)
T TIGR02250 56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQA-IAKLIDPDGKYFGDRIISRD---ESG--SPH----TKSLLRLFP 124 (156)
T ss_pred EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHH-HHHHhCcCCCeeccEEEEec---cCC--CCc----cccHHHHcC
Confidence 356799999999999965 9999999999887754 45667887 488 6677766 433 111 2223 3357
Q ss_pred CCCCCCceEEEecCHhHHH
Q psy6288 100 EKPQPSKCLVFEDAPNGVL 118 (166)
Q Consensus 100 ~~~~~~~~i~IGD~~~Di~ 118 (166)
.+.+.+++|+|++.-..
T Consensus 125 --~d~~~vvivDd~~~~~~ 141 (156)
T TIGR02250 125 --ADESMVVIIDDREDVWP 141 (156)
T ss_pred --CCcccEEEEeCCHHHhh
Confidence 78999999999985333
No 134
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.02 E-value=2.5e-05 Score=68.70 Aligned_cols=127 Identities=16% Similarity=0.115 Sum_probs=83.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCC----------------ccCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPE----------------VKQGKP 86 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~----------------~~~~Kp 86 (166)
..++.|++.++++.|++.|+++.++|+.....+ ..+.+..|+..--..++++. + .-.+.-
T Consensus 577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA-~~iA~~~GI~~~~~~vi~G~---~~~~l~~~el~~~i~~~~Vfar~ 652 (941)
T TIGR01517 577 KDPLRPGVREAVQECQRAGITVRMVTGDNIDTA-KAIARNCGILTFGGLAMEGK---EFRRLVYEEMDPILPKLRVLARS 652 (941)
T ss_pred cCCCchhHHHHHHHHHHCCCEEEEECCCChHHH-HHHHHHcCCCCCCceEeeHH---HhhhCCHHHHHHHhccCeEEEEC
Confidence 358899999999999999999999999997776 45555578853222333332 1 111233
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhhhhh
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFKPEL 157 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~~~l 157 (166)
.|+--..+.+.++ .....+.|+||+.+|..+-+++.+....=..|. ......+|+++. +|..+...+
T Consensus 653 sPe~K~~iV~~lq--~~g~vVam~GDGvNDapALk~AdVGIAmg~~gt--dvAk~aADivL~dd~f~~I~~~i 721 (941)
T TIGR01517 653 SPLDKQLLVLMLK--DMGEVVAVTGDGTNDAPALKLADVGFSMGISGT--EVAKEASDIILLDDNFASIVRAV 721 (941)
T ss_pred CHHHHHHHHHHHH--HCCCEEEEECCCCchHHHHHhCCcceecCCCcc--HHHHHhCCEEEecCCHHHHHHHH
Confidence 4555566666666 456689999999999999999877544211221 113344555544 566655543
No 135
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=98.01 E-value=9e-06 Score=58.48 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=69.8
Q ss_pred hhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchh-------hHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHH
Q psy6288 19 GLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKE-------SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVF 91 (166)
Q Consensus 19 ~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~-------~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~ 91 (166)
+.....+|.||+.++|++|.+.|+.+.++|+.+.. .-...+.++++...+-+.+++.+ |
T Consensus 67 ~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~--------K------ 132 (191)
T PF06941_consen 67 GFFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD--------K------ 132 (191)
T ss_dssp TTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS--------G------
T ss_pred hhhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC--------C------
Confidence 45567899999999999999999877777766543 11233444444333323344433 2
Q ss_pred HHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288 92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL 160 (166)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (166)
..++ .+ ++|.|++..+..+...|++.+++..+++.... .-.-+.|-.|+...+++.
T Consensus 133 ----~~v~--~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~ei~~~i~~~ 188 (191)
T PF06941_consen 133 ----TLVG--GD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEEIEDLILSS 188 (191)
T ss_dssp ----GGC----S----EEEESSSHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTSHHHHHHHT
T ss_pred ----CeEe--cc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHHHHHHHHhc
Confidence 0223 33 89999999999999999999999888654333 334577777877776543
No 136
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.98 E-value=2.1e-05 Score=67.65 Aligned_cols=97 Identities=9% Similarity=-0.028 Sum_probs=71.7
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCc---------------------
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV--------------------- 81 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~--------------------- 81 (166)
..+++|++.++++.|++.|+++.++|+.....+. .+.+..|+... +++++ +.
T Consensus 440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~-~IA~~lGI~~~---~~~~~---~l~~~~~~~~~~~~~~~~~~~~~ 512 (755)
T TIGR01647 440 FDPPRHDTKETIERARHLGVEVKMVTGDHLAIAK-ETARRLGLGTN---IYTAD---VLLKGDNRDDLPSGELGEMVEDA 512 (755)
T ss_pred cCCChhhHHHHHHHHHHCCCeEEEECCCCHHHHH-HHHHHcCCCCC---CcCHH---HhcCCcchhhCCHHHHHHHHHhC
Confidence 3589999999999999999999999999977664 55555788541 11111 00
Q ss_pred -cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288 82 -KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 82 -~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
...+-.|+--..+.+.++ .....+.|+||+.||..+-+++.+...
T Consensus 513 ~vfAr~~Pe~K~~iV~~lq--~~G~~VamvGDGvNDapAL~~AdVGIA 558 (755)
T TIGR01647 513 DGFAEVFPEHKYEIVEILQ--KRGHLVGMTGDGVNDAPALKKADVGIA 558 (755)
T ss_pred CEEEecCHHHHHHHHHHHH--hcCCEEEEEcCCcccHHHHHhCCeeEE
Confidence 123334566666777777 667889999999999999999987643
No 137
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.97 E-value=1.7e-05 Score=59.23 Aligned_cols=67 Identities=10% Similarity=-0.026 Sum_probs=56.3
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHc-------CCeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA-------GMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL 160 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~-------G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (166)
...++.++++++ .++++++||||+.+|+.+++.+ |..++.|.++. ....+++++++..++..+|..+
T Consensus 169 g~a~~~~~~~~~--~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g~----~~~~A~~~~~~~~~v~~~L~~l 242 (244)
T TIGR00685 169 GEIVKRLLWHQP--GSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSGS----KKTVAKFHLTGPQQVLEFLGLL 242 (244)
T ss_pred HHHHHHHHHhcc--cCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecCC----cCCCceEeCCCHHHHHHHHHHH
Confidence 589999999999 8899999999999999999999 77788886442 3456788999999998887543
No 138
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=97.95 E-value=3.8e-05 Score=67.04 Aligned_cols=101 Identities=11% Similarity=-0.016 Sum_probs=72.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-------------CccCCCCChH
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-------------EVKQGKPAPD 89 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-------------~~~~~Kp~~~ 89 (166)
..+++|++.++++.|++.|+++.++|+.....+ ..+.+..|+.. +.++++..-. ......-.|+
T Consensus 513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA-~aIA~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe 589 (867)
T TIGR01524 513 LDPPKESTKEAIAALFKNGINVKVLTGDNEIVT-ARICQEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPM 589 (867)
T ss_pred eCCCchhHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHH
Confidence 458899999999999999999999999987766 55556678852 2233332000 0111223455
Q ss_pred HHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288 90 VFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
--.++.+.++ -..+.+.|+||+.+|..+-+++.+...
T Consensus 590 ~K~~iV~~lq--~~G~vVam~GDGvNDapALk~AdVGIA 626 (867)
T TIGR01524 590 QKSRIIGLLK--KAGHTVGFLGDGINDAPALRKADVGIS 626 (867)
T ss_pred HHHHHHHHHH--hCCCEEEEECCCcccHHHHHhCCEEEE
Confidence 5566667776 556789999999999999999988744
No 139
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=97.95 E-value=3.3e-05 Score=67.64 Aligned_cols=123 Identities=18% Similarity=0.121 Sum_probs=83.1
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCc----------------cCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV----------------KQGKP 86 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~----------------~~~Kp 86 (166)
..+++|++.++++.|++.|+++.++|+.....+ ..+.+.+|+.. +.++++. +. -...-
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA-~aIA~~lGI~~--~~vi~G~---el~~~~~~el~~~v~~~~VfAr~ 621 (903)
T PRK15122 548 LDPPKESAAPAIAALRENGVAVKVLTGDNPIVT-AKICREVGLEP--GEPLLGT---EIEAMDDAALAREVEERTVFAKL 621 (903)
T ss_pred cCccHHHHHHHHHHHHHCCCeEEEECCCCHHHH-HHHHHHcCCCC--CCccchH---hhhhCCHHHHHHHhhhCCEEEEe
Confidence 358999999999999999999999999997766 45556678852 2333332 11 12233
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhh--CChhhhhhh
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL--NSLEEFKPE 156 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~--~~~~~l~~~ 156 (166)
.|+--.++.+.++ -..+.+.|+||+.||..+-+++.+.. .+..|. .-..+.+|.++ +||..+...
T Consensus 622 sPe~K~~iV~~Lq--~~G~vVamtGDGvNDaPALk~ADVGI-Amg~gt--dvAkeaADiVLldd~f~~Iv~a 688 (903)
T PRK15122 622 TPLQKSRVLKALQ--ANGHTVGFLGDGINDAPALRDADVGI-SVDSGA--DIAKESADIILLEKSLMVLEEG 688 (903)
T ss_pred CHHHHHHHHHHHH--hCCCEEEEECCCchhHHHHHhCCEEE-EeCccc--HHHHHhcCEEEecCChHHHHHH
Confidence 4666677777777 56778999999999999999998863 333332 11234444443 445554443
No 140
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=97.93 E-value=7.2e-05 Score=54.79 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
+....+.+++.+| ++++++++|||+.+|+.+.+.+|...+
T Consensus 180 Kg~al~~l~~~lg--i~~~~vi~~GD~~NDi~ml~~ag~~va 219 (221)
T TIGR02463 180 KGKAANWLKATYN--QPDVKTLGLGDGPNDLPLLEVADYAVV 219 (221)
T ss_pred HHHHHHHHHHHhC--CCCCcEEEECCCHHHHHHHHhCCceEE
Confidence 4668899999999 999999999999999999999998754
No 141
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=97.92 E-value=3.3e-05 Score=67.57 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=73.8
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCc----------------cCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEV----------------KQGKP 86 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~----------------~~~Kp 86 (166)
..++.|++.++++.|++.|+++.++|+.....+ ..+.+..|+.. +.++++. +. ....-
T Consensus 548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA-~~IA~~lGI~~--~~v~~G~---el~~l~~~el~~~~~~~~VfAr~ 621 (902)
T PRK10517 548 LDPPKETTAPALKALKASGVTVKILTGDSELVA-AKVCHEVGLDA--GEVLIGS---DIETLSDDELANLAERTTLFARL 621 (902)
T ss_pred hCcchhhHHHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHcCCCc--cCceeHH---HHHhCCHHHHHHHHhhCcEEEEc
Confidence 457899999999999999999999999997766 45556678852 3344433 21 12233
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM 129 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~ 129 (166)
.|+--.++.+.++ -....+.|+||+.||..+-+++.+....
T Consensus 622 sPe~K~~IV~~Lq--~~G~vVam~GDGvNDaPALk~ADVGIAm 662 (902)
T PRK10517 622 TPMHKERIVTLLK--REGHVVGFMGDGINDAPALRAADIGISV 662 (902)
T ss_pred CHHHHHHHHHHHH--HCCCEEEEECCCcchHHHHHhCCEEEEe
Confidence 4666677777777 5677899999999999999999876443
No 142
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=97.90 E-value=0.00065 Score=49.66 Aligned_cols=103 Identities=5% Similarity=-0.093 Sum_probs=65.2
Q ss_pred CccchhHHHHHH-HHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-C-ccCCCCC---hHHHHHHHHH
Q psy6288 24 YNLAIGALRLIN-HLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-E-VKQGKPA---PDVFLVAAKR 97 (166)
Q Consensus 24 ~~~~~g~~~~l~-~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-~-~~~~Kp~---~~~~~~~~~~ 97 (166)
..++||+.+.|+ .++++|++++|+|++....++ .+.+..++..- +.+++.+-.- + .....+. .+=...+.+.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~-~ia~~~~~~~~-~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~~ 170 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVE-AVYFDSNFIHR-LNLIASQIERGNGGWVLPLRCLGHEKVAQLEQK 170 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHH-HHHHhcccccc-CcEEEEEeEEeCCceEcCccCCChHHHHHHHHH
Confidence 368999999996 788899999999999977664 44433333221 2333332000 0 0001111 2223344455
Q ss_pred cCCCCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288 98 FDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130 (166)
Q Consensus 98 ~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v 130 (166)
++ .+.+.+.+-|||.+|+..-.-+|-+.+.-
T Consensus 171 ~~--~~~~~~~aYsDS~~D~pmL~~a~~~~~Vn 201 (210)
T TIGR01545 171 IG--SPLKLYSGYSDSKQDNPLLAFCEHRWRVS 201 (210)
T ss_pred hC--CChhheEEecCCcccHHHHHhCCCcEEEC
Confidence 56 56778899999999999999999876543
No 143
>KOG3120|consensus
Probab=97.89 E-value=2.9e-05 Score=56.35 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=76.8
Q ss_pred hhhhhhcCCccchhHHHHHHHHHHCCC-CEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCC--------------
Q psy6288 16 DMDGLLLGYNLAIGALRLINHLHKHNI-PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPE-------------- 80 (166)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~l~~l~~~g~-~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~-------------- 80 (166)
++...+...++.||+.++++.+++.|- .+.|+|....-.++.. +++.|+.+.|..|++..+-.+
T Consensus 75 ~ik~~~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~-Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~h 153 (256)
T KOG3120|consen 75 EIKQVLRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEI-LEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQH 153 (256)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHH-HHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCC
Confidence 344555678999999999999999875 9999998876666544 566799999988776531100
Q ss_pred -ccCCCC---ChHHHHH-HHHHcCCCCCCCceEEEecCHhHHHHHHHcCC-eEEEecCCC
Q psy6288 81 -VKQGKP---APDVFLV-AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM-SCVMVPDPT 134 (166)
Q Consensus 81 -~~~~Kp---~~~~~~~-~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~-~~i~v~~~~ 134 (166)
+..+-+ +...+.. ..+.++..+..++.+||||+.+|+......-- ..+..-+|+
T Consensus 154 sC~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkgf 213 (256)
T KOG3120|consen 154 SCNLCPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKGF 213 (256)
T ss_pred ccCcCchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCCC
Confidence 111000 0122222 22222222778899999999999998887644 444444444
No 144
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=97.77 E-value=0.00011 Score=65.46 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=83.6
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc----------ceEEecCCCCCcc----------
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF----------HHVVLGSADPEVK---------- 82 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f----------d~v~~~~~~~~~~---------- 82 (166)
..++.|++.++++.|++.|++++++|+.....+ ..+.+..|+..-. ..++++. +..
T Consensus 644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA-~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~---~l~~l~~~~l~~~ 719 (1053)
T TIGR01523 644 YDPPRNESAGAVEKCHQAGINVHMLTGDFPETA-KAIAQEVGIIPPNFIHDRDEIMDSMVMTGS---QFDALSDEEVDDL 719 (1053)
T ss_pred ecCCchhHHHHHHHHHHCCCEEEEECCCCHHHH-HHHHHHcCCCCccccccccccccceeeehH---HhhhcCHHHHHHH
Confidence 458999999999999999999999999997766 4555557884310 1344443 211
Q ss_pred ------CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC--Chhhhh
Q psy6288 83 ------QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN--SLEEFK 154 (166)
Q Consensus 83 ------~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~--~~~~l~ 154 (166)
...-.|+--..+.+.++ -....+.|+||+.+|..+-+.+.+....=..|. ......+|+++. +|..+.
T Consensus 720 ~~~~~V~ar~sP~~K~~iV~~lq--~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt--~vak~aADivl~dd~f~~I~ 795 (1053)
T TIGR01523 720 KALCLVIARCAPQTKVKMIEALH--RRKAFCAMTGDGVNDSPSLKMANVGIAMGINGS--DVAKDASDIVLSDDNFASIL 795 (1053)
T ss_pred hhcCeEEEecCHHHHHHHHHHHH--hcCCeeEEeCCCcchHHHHHhCCccEecCCCcc--HHHHHhcCEEEecCCHHHHH
Confidence 12334555566677776 556789999999999999999987654211221 113345555553 366555
Q ss_pred hhh
Q psy6288 155 PEL 157 (166)
Q Consensus 155 ~~l 157 (166)
..+
T Consensus 796 ~~i 798 (1053)
T TIGR01523 796 NAI 798 (1053)
T ss_pred HHH
Confidence 543
No 145
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.77 E-value=0.00019 Score=53.04 Aligned_cols=90 Identities=12% Similarity=0.015 Sum_probs=56.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD 99 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 99 (166)
..++.|++.++++.|+++|++++++|+.+... ...-|.+ .|+..+ +.++--. .....|+....-....+++-
T Consensus 118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~-~G~~~~-~~LiLR~---~~d~~~~~~~yKs~~R~~l~ 192 (229)
T TIGR01675 118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLIN-AGFTGW-KHLILRG---LEDSNKTVVTYKSEVRKSLM 192 (229)
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHH-cCCCCc-CeeeecC---CCCCCchHhHHHHHHHHHHH
Confidence 57899999999999999999999999998544 2233333 477654 4444432 11223332222233333333
Q ss_pred CCCCCCc-eEEEecCHhHHHH
Q psy6288 100 EKPQPSK-CLVFEDAPNGVLG 119 (166)
Q Consensus 100 ~~~~~~~-~i~IGD~~~Di~~ 119 (166)
...-+ +..|||.++|+.+
T Consensus 193 --~~GYrIv~~iGDq~sDl~G 211 (229)
T TIGR01675 193 --EEGYRIWGNIGDQWSDLLG 211 (229)
T ss_pred --hCCceEEEEECCChHHhcC
Confidence 23333 4569999999965
No 146
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.74 E-value=8.2e-05 Score=56.70 Aligned_cols=49 Identities=8% Similarity=0.114 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS 76 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~ 76 (166)
.|++.++|++|++.|++++|+||+.+..+...+ +.+|+..+|+.+++++
T Consensus 150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~L-e~lgL~~yFDvII~~g 198 (303)
T PHA03398 150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSL-KETKLEGYFDIIICGG 198 (303)
T ss_pred ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HHcCCCccccEEEECC
Confidence 499999999999999999999999888885554 5579999999888886
No 147
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.74 E-value=0.00012 Score=64.23 Aligned_cols=105 Identities=14% Similarity=0.070 Sum_probs=78.8
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc--ceEEecCCCCCc----------------cCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF--HHVVLGSADPEV----------------KQG 84 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f--d~v~~~~~~~~~----------------~~~ 84 (166)
..+|.+++.++++.|+++|+++.++|+.....+ ..+.+..|+..-- +.++++. +. -+.
T Consensus 545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA-~aIa~~~Gi~~~~~~~~vi~G~---el~~l~~~el~~~~~~~~VfA 620 (917)
T COG0474 545 EDPPREDVKEAIEELREAGIKVWMITGDHVETA-IAIAKECGIEAEAESALVIDGA---ELDALSDEELAELVEELSVFA 620 (917)
T ss_pred cCCCCccHHHHHHHHHHCCCcEEEECCCCHHHH-HHHHHHcCCCCCCCceeEeehH---HhhhcCHHHHHHHhhhCcEEE
Confidence 578999999999999999999999999997766 4555556765433 2255553 21 112
Q ss_pred CCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 85 Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
.-.|+--.++.+.++ -...-+.|+||+.||+.+-++|.+.......|
T Consensus 621 RvsP~qK~~IV~~lq--~~g~vVamtGDGvNDapALk~ADVGIamg~~G 667 (917)
T COG0474 621 RVSPEQKARIVEALQ--KSGHVVAMTGDGVNDAPALKAADVGIAMGGEG 667 (917)
T ss_pred EcCHHHHHHHHHHHH--hCCCEEEEeCCCchhHHHHHhcCccEEecccH
Confidence 334666667777777 66788999999999999999998877555544
No 148
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=97.68 E-value=0.0011 Score=46.34 Aligned_cols=101 Identities=17% Similarity=0.122 Sum_probs=62.4
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHH---HHHhhh--cCcccccceEEecCCCC------CccCCCC---ChH
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFE---LKTSRH--KDTLKLFHHVVLGSADP------EVKQGKP---APD 89 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~---~~l~~~--~gl~~~fd~v~~~~~~~------~~~~~Kp---~~~ 89 (166)
....|++.+++++++++|++++++|+.+...+. ..+.+. .|..-....++++.+.. +....+| +.+
T Consensus 26 ~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~ 105 (157)
T smart00775 26 DWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIA 105 (157)
T ss_pred CcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhhcccccCCHHHHHHH
Confidence 356899999999999999999999999876653 222221 12111113455554110 0112333 344
Q ss_pred HHHHHHHHcCCCCCCCce-EEEecCHhHHHHHHHcCCe
Q psy6288 90 VFLVAAKRFDEKPQPSKC-LVFEDAPNGVLGAKAAGMS 126 (166)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~-i~IGD~~~Di~~a~~~G~~ 126 (166)
.+..+.+.+. ...-.. .-+||+.+|+.+-+++|++
T Consensus 106 ~l~~i~~~~~--~~~~~f~~~~gn~~~D~~~y~~~gi~ 141 (157)
T smart00775 106 CLRDIKSLFP--PQGNPFYAGFGNRITDVISYSAVGIP 141 (157)
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCchhHHHHHHcCCC
Confidence 5555555554 222233 3478889999999999995
No 149
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.61 E-value=0.00054 Score=52.16 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=64.4
Q ss_pred Hhhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceEEecCCCCCccCCCCChH
Q psy6288 14 IFDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPD 89 (166)
Q Consensus 14 ~~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~ 89 (166)
+.|+++.+. ...++||+.++|++|+++|++++++||++... ...++. .+|+....+.++++. .
T Consensus 6 ~~D~DGtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~-~~G~~~~~~~i~ts~------------~ 72 (279)
T TIGR01452 6 IFDCDGVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFA-RLGFNGLAEQLFSSA------------L 72 (279)
T ss_pred EEeCCCceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHH-HcCCCCChhhEecHH------------H
Confidence 446666554 35689999999999999999999999976332 223443 357754445555543 2
Q ss_pred HHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288 90 VFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
.....+++.. ....+++++|+.. -....+..|+..+
T Consensus 73 ~~~~~l~~~~--~~~~~v~~iG~~~-~~~~l~~~g~~~~ 108 (279)
T TIGR01452 73 CAARLLRQPP--DAPKAVYVIGEEG-LRAELDAAGIRLA 108 (279)
T ss_pred HHHHHHHhhC--cCCCEEEEEcCHH-HHHHHHHCCCEEe
Confidence 3344455544 3457799999853 2345567787754
No 150
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=97.59 E-value=0.00036 Score=52.90 Aligned_cols=44 Identities=16% Similarity=0.182 Sum_probs=38.6
Q ss_pred CChHHHHHHHHHcCCCCCC-CceEEEecCHhHHHHHHHcCCeEEEec
Q psy6288 86 PAPDVFLVAAKRFDEKPQP-SKCLVFEDAPNGVLGAKAAGMSCVMVP 131 (166)
Q Consensus 86 p~~~~~~~~~~~~~~~~~~-~~~i~IGD~~~Di~~a~~~G~~~i~v~ 131 (166)
.+...++.+++.++ +++ +++++|||+.+|+.+++.+|...+.-.
T Consensus 190 ~Kg~al~~l~~~~~--i~~~~~v~~~GDs~NDi~m~~~ag~~vam~N 234 (273)
T PRK00192 190 DKGKAVRWLKELYR--RQDGVETIALGDSPNDLPMLEAADIAVVVPG 234 (273)
T ss_pred CHHHHHHHHHHHHh--ccCCceEEEEcCChhhHHHHHhCCeeEEeCC
Confidence 44678999999999 999 999999999999999999998765544
No 151
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.58 E-value=0.00024 Score=63.39 Aligned_cols=128 Identities=15% Similarity=0.091 Sum_probs=80.1
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc--------------------------------
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH-------------------------------- 70 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd-------------------------------- 70 (166)
+.++.||+.+.++.|+++|++++++||...+.+. .+.+..|+-..-.
T Consensus 629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~-~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~ 707 (1057)
T TIGR01652 629 EDKLQEGVPETIELLRQAGIKIWVLTGDKVETAI-NIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFN 707 (1057)
T ss_pred hhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHH-HHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999999999999876653 3333234421100
Q ss_pred ---------eEEecCCCCCc----------------------cCCCCChHHHHHHHHHcCCCCC-CCceEEEecCHhHHH
Q psy6288 71 ---------HVVLGSADPEV----------------------KQGKPAPDVFLVAAKRFDEKPQ-PSKCLVFEDAPNGVL 118 (166)
Q Consensus 71 ---------~v~~~~~~~~~----------------------~~~Kp~~~~~~~~~~~~~~~~~-~~~~i~IGD~~~Di~ 118 (166)
.+++++ .. -.++-.|.--..+.+.++ .. ...+++|||+.+|+.
T Consensus 708 ~~~~~~~~~lvi~G~---~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk--~~~~~~vl~iGDG~ND~~ 782 (1057)
T TIGR01652 708 NLGDSGNVALVIDGK---SLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVK--KSTGKTTLAIGDGANDVS 782 (1057)
T ss_pred hhccCCceEEEEccH---HHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHH--hcCCCeEEEEeCCCccHH
Confidence 122221 10 111112222223333333 22 567999999999999
Q ss_pred HHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288 119 GAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 119 ~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (166)
+-++|.+.. ++... ...+....+|+++.+|..|...++
T Consensus 783 mlk~AdVGI-gi~g~-eg~qA~~aaD~~i~~F~~L~~lll 820 (1057)
T TIGR01652 783 MIQEADVGV-GISGK-EGMQAVMASDFAIGQFRFLTKLLL 820 (1057)
T ss_pred HHhhcCeee-EecCh-HHHHHHHhhhhhhhhHHHHHHHHH
Confidence 999997765 44322 111234578999999999888763
No 152
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=97.55 E-value=0.00031 Score=51.30 Aligned_cols=59 Identities=14% Similarity=0.100 Sum_probs=44.6
Q ss_pred CCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhC
Q psy6288 85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148 (166)
Q Consensus 85 Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~ 148 (166)
-.+...++.+++.++ ++++++++|||+.+|+.+++.+|...+.-. + .++....++++..
T Consensus 146 ~~K~~~i~~l~~~~~--i~~~~~i~iGDs~ND~~ml~~ag~~vam~n-a--~~~~k~~A~~v~~ 204 (215)
T TIGR01487 146 VDKGVGVEKLKELLG--IKPEEVAAIGDSENDIDLFRVVGFKVAVAN-A--DDQLKEIADYVTS 204 (215)
T ss_pred CChHHHHHHHHHHhC--CCHHHEEEECCCHHHHHHHHhCCCeEEcCC-c--cHHHHHhCCEEcC
Confidence 345789999999999 999999999999999999999998755442 2 2223344555554
No 153
>KOG0207|consensus
Probab=97.50 E-value=0.00064 Score=58.44 Aligned_cols=87 Identities=11% Similarity=0.089 Sum_probs=64.5
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..++.|++...++.|++.|++++++|+.....+. .+.+..| ++.|++.- + |+--....++++ .
T Consensus 721 ~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~-svA~~VG----i~~V~aev--------~--P~~K~~~Ik~lq--~ 783 (951)
T KOG0207|consen 721 EDQVRPDAALAVAELKSMGIKVVMLTGDNDAAAR-SVAQQVG----IDNVYAEV--------L--PEQKAEKIKEIQ--K 783 (951)
T ss_pred ccccchhHHHHHHHHHhcCceEEEEcCCCHHHHH-HHHHhhC----cceEEecc--------C--chhhHHHHHHHH--h
Confidence 4678999999999999999999999999987764 4445467 45555433 2 222345556666 5
Q ss_pred CCCceEEEecCHhHHHHHHHcCCe
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMS 126 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~ 126 (166)
....+.||||+.||-.+-..+.+.
T Consensus 784 ~~~~VaMVGDGINDaPALA~AdVG 807 (951)
T KOG0207|consen 784 NGGPVAMVGDGINDAPALAQADVG 807 (951)
T ss_pred cCCcEEEEeCCCCccHHHHhhccc
Confidence 567899999999998877776654
No 154
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=97.49 E-value=0.00045 Score=50.55 Aligned_cols=62 Identities=24% Similarity=0.252 Sum_probs=46.8
Q ss_pred CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288 83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS 149 (166)
Q Consensus 83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~ 149 (166)
...++...++.++++++ ++++++++|||+.+|+.+++.+|.. +.+... .++....++++..+
T Consensus 146 ~~~~K~~~i~~l~~~~~--i~~~~~i~~GD~~NDi~m~~~ag~~-vam~Na--~~~~k~~A~~vt~~ 207 (225)
T TIGR01482 146 QGVNKGVAVKKLKEKLG--IKPGETLVCGDSENDIDLFEVPGFG-VAVANA--QPELKEWADYVTES 207 (225)
T ss_pred CCCCHHHHHHHHHHHhC--CCHHHEEEECCCHhhHHHHHhcCce-EEcCCh--hHHHHHhcCeecCC
Confidence 34566889999999999 9999999999999999999999986 444333 22334455655543
No 155
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=97.47 E-value=0.0011 Score=49.96 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v 130 (166)
+...++.+++.++ +++++++.|||+.+|+..-+.+|...+.-
T Consensus 190 K~~al~~l~~~lg--i~~~~v~afGD~~ND~~Ml~~ag~gvam~ 231 (264)
T COG0561 190 KGYALQRLAKLLG--IKLEEVIAFGDSTNDIEMLEVAGLGVAMG 231 (264)
T ss_pred hHHHHHHHHHHhC--CCHHHeEEeCCccccHHHHHhcCeeeecc
Confidence 3556778888899 88999999999999999999888765443
No 156
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=97.43 E-value=0.00042 Score=51.83 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=45.3
Q ss_pred ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
.....++...++.+++.++ ++++++++|||+.+|+.+.+.++..++.+...
T Consensus 162 ~~~~~~K~~al~~l~~~~~--i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na 212 (249)
T TIGR01485 162 LPQGSGKGQALQYLLQKLA--MEPSQTLVCGDSGNDIELFEIGSVRGVIVSNA 212 (249)
T ss_pred EeCCCChHHHHHHHHHHcC--CCccCEEEEECChhHHHHHHccCCcEEEECCC
Confidence 3456778999999999999 99999999999999999999988888888665
No 157
>KOG2961|consensus
Probab=97.41 E-value=0.00031 Score=48.26 Aligned_cols=103 Identities=14% Similarity=-0.009 Sum_probs=66.5
Q ss_pred CCccchhHHHHHHHHHHC-C-CCEEEEeCCchh-------hHHHHHhhhcCcccccceEEecCCCCCccCCCCC--hHHH
Q psy6288 23 GYNLAIGALRLINHLHKH-N-IPFAIATSSAKE-------SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA--PDVF 91 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~-g-~~i~ivS~~~~~-------~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~--~~~~ 91 (166)
+..+.|....-+++++.. | ..++++||+.-. ...+.+.+..|+.- +. ....||. .+.+
T Consensus 59 ~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpV-----lR------Hs~kKP~ct~E~~ 127 (190)
T KOG2961|consen 59 SLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPV-----LR------HSVKKPACTAEEV 127 (190)
T ss_pred ccccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCce-----Ee------ecccCCCccHHHH
Confidence 345678888888888864 4 679999987422 12234443334421 11 1223443 2334
Q ss_pred HHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCc
Q psy6288 92 LVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPK 137 (166)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~ 137 (166)
......-.. ..+++++||||.+ +||..|...|.-.+|...|....
T Consensus 128 ~y~~~Nshv-~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv~~~ 173 (190)
T KOG2961|consen 128 EYHFGNSHV-CTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGVRAE 173 (190)
T ss_pred HHHhCCccc-CChhHeEEEccchhhhHhhhhhccceeEEeccccccc
Confidence 443332222 5789999999999 99999999999999999886443
No 158
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.40 E-value=0.00079 Score=59.83 Aligned_cols=100 Identities=14% Similarity=0.078 Sum_probs=70.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc------------------------ceEEecCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF------------------------HHVVLGSAD 78 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f------------------------d~v~~~~~~ 78 (166)
..++.|++.+.+++|++.|+++.++|+.....+.. +.+..|+..-- ..++++.
T Consensus 566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~-ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~-- 642 (997)
T TIGR01106 566 IDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKA-IAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGS-- 642 (997)
T ss_pred cCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHH-HHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhH--
Confidence 45889999999999999999999999999887644 44446763210 1234432
Q ss_pred CCc------------------cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288 79 PEV------------------KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 79 ~~~------------------~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
+. -++.-.|+--.++.+.++ ....-+.|+||+.+|+.+-+.+.+...
T Consensus 643 -~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq--~~g~vv~~~GDG~ND~paLk~AdVGia 707 (997)
T TIGR01106 643 -DLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQ--RQGAIVAVTGDGVNDSPALKKADIGVA 707 (997)
T ss_pred -HhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHH--HCCCEEEEECCCcccHHHHhhCCccee
Confidence 11 223334555555666666 455679999999999999999887643
No 159
>KOG2470|consensus
Probab=97.39 E-value=0.00053 Score=53.21 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=72.4
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcC--cccccceEEecCCCCCcc--CCCC---------------
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKD--TLKLFHHVVLGSADPEVK--QGKP--------------- 86 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~g--l~~~fd~v~~~~~~~~~~--~~Kp--------------- 86 (166)
-.|....+|+.|+++|.+++++||++...+..-..-..| +.+.||.|+.....++.. .++|
T Consensus 241 r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdk 320 (510)
T KOG2470|consen 241 RNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDK 320 (510)
T ss_pred ccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhh
Confidence 356788899999999999999999998776544332223 457888776553222111 1122
Q ss_pred ---------C-hHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHH-HcCCeEEEecCC
Q psy6288 87 ---------A-PDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAK-AAGMSCVMVPDP 133 (166)
Q Consensus 87 ---------~-~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~-~~G~~~i~v~~~ 133 (166)
. ..-+...++--+ +-..+++++||.+ +|+..-. +.|+.+-.+...
T Consensus 321 v~klekgkiYy~G~l~~flelt~--WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~E 377 (510)
T KOG2470|consen 321 VDKLEKGKIYYQGNLKSFLELTG--WRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIPE 377 (510)
T ss_pred hhhcccCceeeeccHHHHHHHhc--cCCCeeEEecCcchhhhhhhHhhcccccccchHH
Confidence 0 111334555556 8899999999999 9998888 899988777543
No 160
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=97.32 E-value=0.001 Score=46.96 Aligned_cols=109 Identities=12% Similarity=0.049 Sum_probs=71.1
Q ss_pred HHhhhhhhhcC-CccchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceEEecCCCCCccCCCCCh
Q psy6288 13 VIFDMDGLLLG-YNLAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88 (166)
Q Consensus 13 ~~~~~~~~~~~-~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~ 88 (166)
++......+.+ ..|.+-++++|+-=++.|-.++.+|+.+... +.+.|.+.+.+....-.++.++ ..||..
T Consensus 101 FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gd------k~k~~q 174 (237)
T COG3700 101 FWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGD------KPKPGQ 174 (237)
T ss_pred HHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccC------CCCccc
Confidence 34444443443 3456677788888888999999999986543 3344455566666555566666 123333
Q ss_pred HHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
..--+.+++.+ --++-||+-+||.+|+++|+..|-+-+.
T Consensus 175 y~Kt~~i~~~~------~~IhYGDSD~Di~AAkeaG~RgIRilRA 213 (237)
T COG3700 175 YTKTQWIQDKN------IRIHYGDSDNDITAAKEAGARGIRILRA 213 (237)
T ss_pred ccccHHHHhcC------ceEEecCCchhhhHHHhcCccceeEEec
Confidence 33334444544 3588999999999999999998877654
No 161
>PLN03190 aminophospholipid translocase; Provisional
Probab=97.28 E-value=0.0012 Score=59.51 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=40.1
Q ss_pred CCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288 104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (166)
..-+++|||+.+|+.+-++|.+.. ++... .-.+....+|+.+..|..|..+|+
T Consensus 871 ~~vtlaIGDGaNDv~mIq~AdVGI-GIsG~-EG~qA~~aSDfaI~~Fr~L~rLLl 923 (1178)
T PLN03190 871 SDMTLAIGDGANDVSMIQMADVGV-GISGQ-EGRQAVMASDFAMGQFRFLVPLLL 923 (1178)
T ss_pred CcEEEEECCCcchHHHHHhcCeee-eecCc-hhHHHHHhhccchhhhHHHHHHHH
Confidence 356899999999999999997665 44322 212344577999999999988876
No 162
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.23 E-value=0.0006 Score=49.25 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=39.0
Q ss_pred CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288 84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
..++...++.++++++ ++++++++|||+.+|+.+++.+|+..+
T Consensus 161 ~~~K~~~~~~~~~~~~--~~~~~~~~~GD~~nD~~~~~~~~~~va 203 (204)
T TIGR01484 161 GVDKGSALQALLKELN--GKRDEILAFGDSGNDEEMFEVAGLAVA 203 (204)
T ss_pred CCChHHHHHHHHHHhC--CCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence 5667899999999999 999999999999999999999998653
No 163
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.22 E-value=0.0026 Score=52.41 Aligned_cols=84 Identities=14% Similarity=0.099 Sum_probs=64.1
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..++.|++.+.++.|++.|++++++|+.....+ ..+.+..|+ + +. -.|+.-..+.+++. .
T Consensus 345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a-~~ia~~lgi---~-----~~---------~~p~~K~~~v~~l~--~ 404 (499)
T TIGR01494 345 EDPLRDDAKETISELREAGIRVIMLTGDNVLTA-KAIAKELGI---F-----AR---------VTPEEKAALVEALQ--K 404 (499)
T ss_pred cCCCchhHHHHHHHHHHCCCeEEEEcCCCHHHH-HHHHHHcCc---e-----ec---------cCHHHHHHHHHHHH--H
Confidence 358899999999999999999999999997766 444555565 1 11 12444456666665 4
Q ss_pred CCCceEEEecCHhHHHHHHHcCCe
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMS 126 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~ 126 (166)
....+.|+||+.+|..+-+.+++.
T Consensus 405 ~g~~v~~vGDg~nD~~al~~Advg 428 (499)
T TIGR01494 405 KGRVVAMTGDGVNDAPALKKADVG 428 (499)
T ss_pred CCCEEEEECCChhhHHHHHhCCCc
Confidence 567899999999999999988765
No 164
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.20 E-value=0.0032 Score=56.41 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=35.9
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
..++.|++.+.++.|+++|+++.++|+.....+.. +.+..|+.
T Consensus 654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~-iA~~~gii 696 (1054)
T TIGR01657 654 ENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVH-VARECGIV 696 (1054)
T ss_pred ecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHH-HHHHcCCC
Confidence 56899999999999999999999999999777644 44546774
No 165
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.16 E-value=0.0015 Score=52.40 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=78.4
Q ss_pred ccchh--HHHHHHHHHHCCCCEEEEeCCchhh-HHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC
Q psy6288 25 NLAIG--ALRLINHLHKHNIPFAIATSSAKES-FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK 101 (166)
Q Consensus 25 ~~~~g--~~~~l~~l~~~g~~i~ivS~~~~~~-~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~ 101 (166)
.++|. ..++.+.+.+.|.+++++|....+. +.+.++...|.+.+--.+..+. +....|.....|..+++.-+
T Consensus 97 vLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~~nipiY~S~---e~rl~KnSg~LFk~Vlk~En-- 171 (635)
T COG5610 97 VLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDFNNIPIYMSS---EFRLKKNSGNLFKAVLKLEN-- 171 (635)
T ss_pred EeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCccCceeeecc---eeehhcccchHHHHHHhhcC--
Confidence 34444 4578999999999999999885443 3333444456654433456666 78888999999999999999
Q ss_pred CCCCceEEEecCH-hHHHHHHHcCCeEEEe
Q psy6288 102 PQPSKCLVFEDAP-NGVLGAKAAGMSCVMV 130 (166)
Q Consensus 102 ~~~~~~i~IGD~~-~Di~~a~~~G~~~i~v 130 (166)
+++.+.+++||+. .|+..+++.|+.+.+-
T Consensus 172 Vd~~~w~H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 172 VDPKKWIHCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred CChhheEEecCchhhhhcCccccchhHHHH
Confidence 9999999999988 9999999999987755
No 166
>KOG0202|consensus
Probab=97.16 E-value=0.002 Score=55.24 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=73.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc----eEEecCCCCC-------------ccCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH----HVVLGSADPE-------------VKQGK 85 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd----~v~~~~~~~~-------------~~~~K 85 (166)
..+|++++.++++.|++.|+++.++|+.....+ ..+-+..|+-..-+ ..+++.-.++ .-...
T Consensus 582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA-~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR 660 (972)
T KOG0202|consen 582 LDPPRPEVADAIELCRQAGIRVIMITGDNKETA-EAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFAR 660 (972)
T ss_pred cCCCchhHHHHHHHHHHcCCEEEEEcCCCHHHH-HHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEe
Confidence 358999999999999999999999999998876 55666678644333 2233320000 00122
Q ss_pred CChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288 86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS 126 (166)
Q Consensus 86 p~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~ 126 (166)
-.|+.-.++.+.++ -..+=+.|-||+.+|..+-+.+.+.
T Consensus 661 ~~P~HK~kIVeaLq--~~geivAMTGDGVNDApALK~AdIG 699 (972)
T KOG0202|consen 661 AEPQHKLKIVEALQ--SRGEVVAMTGDGVNDAPALKKADIG 699 (972)
T ss_pred cCchhHHHHHHHHH--hcCCEEEecCCCccchhhhhhcccc
Confidence 24667778888888 6778899999999999999998765
No 167
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=97.12 E-value=0.0006 Score=51.07 Aligned_cols=60 Identities=20% Similarity=0.209 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288 85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS 149 (166)
Q Consensus 85 Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~ 149 (166)
-.+...++.+++.++ ++++++++|||+.+|+.+.+.+|+..+. ..+ .......+++++.+
T Consensus 187 ~~K~~~i~~~~~~~~--~~~~~~~~~GD~~nD~~m~~~~~~~~a~-~na--~~~~k~~a~~~~~~ 246 (256)
T TIGR00099 187 VSKGSALQSLAEALG--ISLEDVIAFGDGMNDIEMLEAAGYGVAM-GNA--DEELKALADYVTDS 246 (256)
T ss_pred CChHHHHHHHHHHcC--CCHHHEEEeCCcHHhHHHHHhCCceeEe-cCc--hHHHHHhCCEEecC
Confidence 335889999999999 9999999999999999999999986444 222 22333445555544
No 168
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=97.11 E-value=0.00078 Score=49.88 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=41.5
Q ss_pred ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecC
Q psy6288 81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD 132 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~ 132 (166)
.....++...++.++++++ ++++++++|||+.+|+.+.+.+|... .+.+
T Consensus 154 ~~~~~~K~~al~~l~~~~g--~~~~~~i~~GD~~nD~~ml~~~~~~i-av~n 202 (236)
T TIGR02471 154 LPLRASKGLALRYLSYRWG--LPLEQILVAGDSGNDEEMLRGLTLGV-VVGN 202 (236)
T ss_pred eeCCCChHHHHHHHHHHhC--CCHHHEEEEcCCccHHHHHcCCCcEE-EEcC
Confidence 4456778999999999999 99999999999999999999987554 4443
No 169
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=97.11 E-value=0.00099 Score=49.39 Aligned_cols=95 Identities=17% Similarity=0.068 Sum_probs=55.7
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhH---HHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESF---ELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~---~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
.++.||+.+|++.+++.|+.|+++||.+...- ..-|.+ .|...+-..++....+............-+..+++-|
T Consensus 114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~-~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~G- 191 (229)
T PF03767_consen 114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKK-AGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKG- 191 (229)
T ss_dssp GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHH-HTTSTBSCGEEEEESSTSS------SHHHHHHHHHTT-
T ss_pred CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHH-cCCCccchhccccccccccccccccchHHHHHHHHcC-
Confidence 47899999999999999999999999875532 122333 4765543334444411000011122333333333333
Q ss_pred CCCCCceEEEecCHhHHHHHHHc
Q psy6288 101 KPQPSKCLVFEDAPNGVLGAKAA 123 (166)
Q Consensus 101 ~~~~~~~i~IGD~~~Di~~a~~~ 123 (166)
..=+.+|||.++|+..++..
T Consensus 192 ---y~Ii~~iGD~~~D~~~~~~~ 211 (229)
T PF03767_consen 192 ---YRIIANIGDQLSDFSGAKTA 211 (229)
T ss_dssp ---EEEEEEEESSGGGCHCTHHH
T ss_pred ---CcEEEEeCCCHHHhhccccc
Confidence 22278899999999995443
No 170
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=97.07 E-value=0.0042 Score=46.14 Aligned_cols=96 Identities=21% Similarity=0.252 Sum_probs=60.8
Q ss_pred hhhhhhhc-CCccchhHHHHHHHHHHCCCCEEEEeCCc---hhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHH
Q psy6288 15 FDMDGLLL-GYNLAIGALRLINHLHKHNIPFAIATSSA---KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDV 90 (166)
Q Consensus 15 ~~~~~~~~-~~~~~~g~~~~l~~l~~~g~~i~ivS~~~---~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~ 90 (166)
.|+++.+. ...++|++.++|+.++++|+++.++||+. ......++.+.+|+.-..+.++++. ...
T Consensus 3 fD~DGvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~-----------~~~ 71 (236)
T TIGR01460 3 FDIDGVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSG-----------SVT 71 (236)
T ss_pred EeCcCccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHH-----------HHH
Confidence 45666544 35689999999999999999999999776 3334445555457665566666654 222
Q ss_pred HHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288 91 FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS 126 (166)
Q Consensus 91 ~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~ 126 (166)
...+.++.. ...++++|.. ......+..|+.
T Consensus 72 ~~~l~~~~~----~~~v~v~G~~-~~~~~l~~~g~~ 102 (236)
T TIGR01460 72 KDLLRQRFE----GEKVYVIGVG-ELRESLEGLGFR 102 (236)
T ss_pred HHHHHHhCC----CCEEEEECCH-HHHHHHHHcCCc
Confidence 333333332 3457778863 344555666653
No 171
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=97.04 E-value=0.00088 Score=46.55 Aligned_cols=84 Identities=20% Similarity=0.268 Sum_probs=55.6
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc-ccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT-LKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl-~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..++||+.+||+.|.+. +.++|.|.+....+...+ +.+.. ..+|+.++..+ ++...+.. +.+-+++++ .
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~-~~ldp~~~~~~~~~~r~---~~~~~~~~---~~KdL~~l~--~ 104 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVL-DALDPNGKLFSRRLYRD---DCTFDKGS---YIKDLSKLG--R 104 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHH-HHHTTTTSSEEEEEEGG---GSEEETTE---EE--GGGSS--S
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHH-Hhhhhhccccccccccc---cccccccc---cccchHHHh--h
Confidence 45799999999999775 999999999977765444 54555 46788888766 44322211 125677777 7
Q ss_pred CCCceEEEecCHhHH
Q psy6288 103 QPSKCLVFEDAPNGV 117 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di 117 (166)
+.+++++|.|++.-.
T Consensus 105 ~~~~vvivDD~~~~~ 119 (159)
T PF03031_consen 105 DLDNVVIVDDSPRKW 119 (159)
T ss_dssp -GGGEEEEES-GGGG
T ss_pred ccccEEEEeCCHHHe
Confidence 899999999999643
No 172
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=97.03 E-value=0.0035 Score=46.73 Aligned_cols=97 Identities=19% Similarity=0.190 Sum_probs=53.3
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec----CCCC-CccCCCCCh-------HH
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG----SADP-EVKQGKPAP-------DV 90 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~----~~~~-~~~~~Kp~~-------~~ 90 (166)
...+++|+.++++.|+++++++.|+|.+--..+...+.++ +....--.|++. +.++ -.+...|-. ..
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~-~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~ 166 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA-GVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESA 166 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT-T--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc-CCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccc
Confidence 4689999999999999999999999999988887777765 432111122221 1000 112222211 11
Q ss_pred HH--HHHHHcCCCCCCCceEEEecCHhHHHHHHHc
Q psy6288 91 FL--VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA 123 (166)
Q Consensus 91 ~~--~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~ 123 (166)
+. ...+.+ -...+++.+||+..|+..|..+
T Consensus 167 l~~~~~~~~~---~~R~NvlLlGDslgD~~Ma~G~ 198 (246)
T PF05822_consen 167 LEDSPYFKQL---KKRTNVLLLGDSLGDLHMADGV 198 (246)
T ss_dssp HTTHHHHHCT---TT--EEEEEESSSGGGGTTTT-
T ss_pred ccCchHHHHh---ccCCcEEEecCccCChHhhcCC
Confidence 11 111223 3688999999999999998766
No 173
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=97.02 E-value=0.0049 Score=46.63 Aligned_cols=105 Identities=12% Similarity=0.129 Sum_probs=58.9
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh---hcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR---HKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD 99 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~---~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 99 (166)
..++.|++.++.+.+++.|++|+++||.+... +....+ ..|...+ +.++--.. .....+.....-....+++-
T Consensus 143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~-r~aT~~NL~kaGy~~~-~~LiLR~~--~D~~~~~av~yKs~~R~~li 218 (275)
T TIGR01680 143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKDK-QAVTEANLKKAGYHTW-EKLILKDP--QDNSAENAVEYKTAARAKLI 218 (275)
T ss_pred cCCCChHHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHHHHHcCCCCc-ceeeecCC--CCCccchhHHHHHHHHHHHH
Confidence 57889999999999999999999999998442 222222 2366543 44433320 11222221222222223322
Q ss_pred CCCC-CCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 100 EKPQ-PSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 100 ~~~~-~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
.. ..=+..|||.++|+.+....+-++.-+..+
T Consensus 219 --~eGYrIv~~iGDq~sDl~G~~~g~~RtFKLPNP 251 (275)
T TIGR01680 219 --QEGYNIVGIIGDQWNDLKGEHRGAIRSFKLPNP 251 (275)
T ss_pred --HcCceEEEEECCCHHhccCCCccCcceecCCCc
Confidence 12 233566999999996654222344444443
No 174
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=96.99 E-value=0.00076 Score=50.85 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288 85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS 149 (166)
Q Consensus 85 Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~ 149 (166)
-.+..+++.+++.+| +++++++.|||+.+|+..-+.+|... .+..+ ..+....++++..+
T Consensus 195 vsKg~al~~l~~~~g--i~~~~v~afGD~~NDi~Ml~~ag~~v-Am~NA--~~~vK~~A~~vt~~ 254 (270)
T PRK10513 195 VNKGTGVKSLAEHLG--IKPEEVMAIGDQENDIAMIEYAGVGV-AMGNA--IPSVKEVAQFVTKS 254 (270)
T ss_pred CChHHHHHHHHHHhC--CCHHHEEEECCchhhHHHHHhCCceE-EecCc--cHHHHHhcCeeccC
Confidence 334789999999999 99999999999999999999999843 33333 23334455665544
No 175
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.88 E-value=0.0025 Score=48.32 Aligned_cols=66 Identities=12% Similarity=-0.004 Sum_probs=49.1
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHc---CCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCC
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA---GMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLP 161 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~---G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 161 (166)
....+++++.++ ++.++++++||+.+|..+-+.+ |..++.|..+. ..+.+.+++..++..+|..+.
T Consensus 176 g~al~~ll~~~~--~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~------~~A~~~l~~~~~v~~~L~~l~ 244 (266)
T PRK10187 176 GEAIAAFMQEAP--FAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGA------TQASWRLAGVPDVWSWLEMIT 244 (266)
T ss_pred HHHHHHHHHhcC--CCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCC------CcCeEeCCCHHHHHHHHHHHH
Confidence 456677788888 8899999999999999998877 45667775542 345667777777777765543
No 176
>KOG3128|consensus
Probab=96.78 E-value=0.0049 Score=45.92 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=63.7
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec----CCCC-CccCCCCChHH-------H
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG----SADP-EVKQGKPAPDV-------F 91 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~----~~~~-~~~~~Kp~~~~-------~ 91 (166)
..+.+|..++++.|+++++++.|+|.+.-..++..+.+..++.. +-.+++- +-++ -.+..+|-... .
T Consensus 137 i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~p-n~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~ 215 (298)
T KOG3128|consen 137 IALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHP-NVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVL 215 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCc-cHHhhhhhhhhcccchhhhhhHHHHHHHccchHHH
Confidence 46788999999999999999999999988888888877655433 2222211 1000 12223332222 2
Q ss_pred HHHHHHcCCCCCCCceEEEecCHhHHHHHHHc
Q psy6288 92 LVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAA 123 (166)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~ 123 (166)
+..-+.+....+..++++.||++.|+..|.-+
T Consensus 216 ~~~s~yf~~~~~~~nVillGdsigdl~ma~gv 247 (298)
T KOG3128|consen 216 QNESEYFHQLAGRVNVILLGDSIGDLHMADGV 247 (298)
T ss_pred HhhhHHHhhccCCceEEEeccccccchhhcCC
Confidence 22223333224788999999999999988754
No 177
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=96.66 E-value=0.029 Score=41.71 Aligned_cols=81 Identities=16% Similarity=0.097 Sum_probs=59.1
Q ss_pred CEEEEeCCchhhHHHHHhhhcCcccccc--eEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHH
Q psy6288 43 PFAIATSSAKESFELKTSRHKDTLKLFH--HVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGA 120 (166)
Q Consensus 43 ~i~ivS~~~~~~~~~~l~~~~gl~~~fd--~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a 120 (166)
.+.|-|+.-.+.+.+.++ +|+..+|. .|+++- ..+| .+-|+++.+++| -+...-++|||+...-.+|
T Consensus 178 NvLVTs~qLVPaLaKcLL--y~L~~~f~ieNIYSa~-----kvGK--~~cFe~I~~Rfg--~p~~~f~~IGDG~eEe~aA 246 (274)
T TIGR01658 178 NVLVTSGQLIPSLAKCLL--FRLDTIFRIENVYSSI-----KVGK--LQCFKWIKERFG--HPKVRFCAIGDGWEECTAA 246 (274)
T ss_pred EEEEEcCccHHHHHHHHH--hccCCccccccccchh-----hcch--HHHHHHHHHHhC--CCCceEEEeCCChhHHHHH
Confidence 344444444444444444 47777773 455544 2344 889999999999 7778899999999999999
Q ss_pred HHcCCeEEEecCCC
Q psy6288 121 KAAGMSCVMVPDPT 134 (166)
Q Consensus 121 ~~~G~~~i~v~~~~ 134 (166)
+..+++.+-|....
T Consensus 247 k~l~wPFw~I~~h~ 260 (274)
T TIGR01658 247 QAMNWPFVKIDLHP 260 (274)
T ss_pred HhcCCCeEEeecCC
Confidence 99999999887653
No 178
>PRK10976 putative hydrolase; Provisional
Probab=96.63 E-value=0.0024 Score=48.08 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=38.5
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
+..+++.+++.+| +++++++.|||+.+|+.+-+.+|.. +.+..+
T Consensus 191 Kg~al~~l~~~lg--i~~~~viafGD~~NDi~Ml~~ag~~-vAm~NA 234 (266)
T PRK10976 191 KGHALEAVAKKLG--YSLKDCIAFGDGMNDAEMLSMAGKG-CIMGNA 234 (266)
T ss_pred hHHHHHHHHHHcC--CCHHHeEEEcCCcccHHHHHHcCCC-eeecCC
Confidence 4889999999999 9999999999999999999999985 444433
No 179
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=96.47 E-value=0.0083 Score=44.97 Aligned_cols=45 Identities=11% Similarity=0.121 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHcCCCCC--CCceEEEecCHhHHHHHHHcCCeEEEec
Q psy6288 85 KPAPDVFLVAAKRFDEKPQ--PSKCLVFEDAPNGVLGAKAAGMSCVMVP 131 (166)
Q Consensus 85 Kp~~~~~~~~~~~~~~~~~--~~~~i~IGD~~~Di~~a~~~G~~~i~v~ 131 (166)
-.+....+.+++.++ ++ .+++++|||+.+|+.+.+.+|...+.-.
T Consensus 175 ~~Kg~ai~~l~~~~~--i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~N 221 (256)
T TIGR01486 175 SDKGKAANALKQFYN--QPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPG 221 (256)
T ss_pred CCHHHHHHHHHHHHh--hcCCCceEEEEcCCHhhHHHHHHCCEEEEeCC
Confidence 345778899999999 88 9999999999999999999998765443
No 180
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=96.34 E-value=0.048 Score=41.05 Aligned_cols=108 Identities=14% Similarity=0.225 Sum_probs=70.4
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh--hcCcc--cc-cc--eEE----ecC--CC-C------CccC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR--HKDTL--KL-FH--HVV----LGS--AD-P------EVKQ 83 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~--~~gl~--~~-fd--~v~----~~~--~~-~------~~~~ 83 (166)
-..-+.+.++++.|++.|+++..+|..........+.+ .+|++ .. |. ..+ ... .+ + -...
T Consensus 80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 34678999999999999999999998875443222222 24542 11 10 000 000 00 0 0112
Q ss_pred CCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHH----cCCeEEEecCC
Q psy6288 84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKA----AGMSCVMVPDP 133 (166)
Q Consensus 84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~----~G~~~i~v~~~ 133 (166)
+-++..++...+.+.+ ..|+++|||+|+...+....+ .|+..+++...
T Consensus 160 ~~~KG~~L~~fL~~~~--~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKIN--QSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred CCccHHHHHHHHHHcC--CCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 3456799999999999 999999999999977766554 57777766544
No 181
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=96.32 E-value=0.0054 Score=46.33 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecC
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD 132 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~ 132 (166)
+...++.+++.+| +++++++.|||+.+|+.+-+.+|. ++.+..
T Consensus 189 Kg~al~~l~~~~g--i~~~~v~afGD~~NDi~Ml~~ag~-~vAm~N 231 (272)
T PRK15126 189 KGAALAVLSQHLG--LSLADCMAFGDAMNDREMLGSVGR-GFIMGN 231 (272)
T ss_pred hHHHHHHHHHHhC--CCHHHeEEecCCHHHHHHHHHcCC-ceeccC
Confidence 4789999999999 999999999999999999999997 444443
No 182
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=96.30 E-value=0.006 Score=45.98 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=42.3
Q ss_pred hhhhhhhcC-Cc----cchhHHHHHHHHHHCCCCEEEEeCCchhh---HHHHHhhhcCcccccceEEec
Q psy6288 15 FDMDGLLLG-YN----LAIGALRLINHLHKHNIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLG 75 (166)
Q Consensus 15 ~~~~~~~~~-~~----~~~g~~~~l~~l~~~g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~ 75 (166)
.|+++.+.. .. +.|++.++|++|+++|++++++||++... ...++.+ +|+.--.+.++++
T Consensus 6 ~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~-~g~~~~~~~i~ts 73 (257)
T TIGR01458 6 LDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQR-LGFDISEDEVFTP 73 (257)
T ss_pred EeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHH-cCCCCCHHHeEcH
Confidence 455665543 33 89999999999999999999999986554 4444433 5775434555555
No 183
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=96.26 E-value=0.007 Score=44.42 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChh
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLE 151 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~ 151 (166)
+..+++.+++.++ +++++++.|||+.+|+.+.+.+|.. +.+... .......+++++.+-.
T Consensus 187 K~~ai~~l~~~~~--i~~~~~~~~GD~~ND~~Ml~~~~~~-~am~na--~~~~k~~a~~i~~~~~ 246 (254)
T PF08282_consen 187 KGSAIKYLLEYLG--ISPEDIIAFGDSENDIEMLELAGYS-VAMGNA--TPELKKAADYITPSNN 246 (254)
T ss_dssp HHHHHHHHHHHHT--TSGGGEEEEESSGGGHHHHHHSSEE-EEETTS---HHHHHHSSEEESSGT
T ss_pred HHHHHHHHhhhcc--cccceeEEeecccccHhHHhhcCeE-EEEcCC--CHHHHHhCCEEecCCC
Confidence 3678889999999 9999999999999999999999877 344332 2233444555544433
No 184
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=96.17 E-value=0.014 Score=45.49 Aligned_cols=98 Identities=18% Similarity=0.266 Sum_probs=64.6
Q ss_pred Hhhhhhhhc-CCccchhHHHHHHHHHHC----CCCEEEEeCCc---hhhHHHHHhhhcCcccccceEEecCCCCCccCCC
Q psy6288 14 IFDMDGLLL-GYNLAIGALRLINHLHKH----NIPFAIATSSA---KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGK 85 (166)
Q Consensus 14 ~~~~~~~~~-~~~~~~g~~~~l~~l~~~----g~~i~ivS~~~---~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~K 85 (166)
+.|+++.+. ...+.|++.++++.|++. |+++.++||+. .......+.+.+|+.--.+.++++.
T Consensus 4 ifD~DGvL~~g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~--------- 74 (321)
T TIGR01456 4 AFDIDGVLFRGKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH--------- 74 (321)
T ss_pred EEeCcCceECCccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh---------
Confidence 356677555 356799999999999998 99999999996 3333344545567653333333332
Q ss_pred CChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288 86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM 129 (166)
Q Consensus 86 p~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~ 129 (166)
. .....+++++ . .+++||.+. -...++..|+..+.
T Consensus 75 --~-~~~~ll~~~~--~---~v~viG~~~-~~~~l~~~G~~~vv 109 (321)
T TIGR01456 75 --S-PYKSLVNKYE--K---RILAVGTGS-VRGVAEGYGFQNVV 109 (321)
T ss_pred --H-HHHHHHHHcC--C---ceEEEeChH-HHHHHHHcCCcccc
Confidence 1 2344455554 2 678898765 46677789987653
No 185
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=96.07 E-value=0.0092 Score=45.18 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHcCCCC---CCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288 86 PAPDVFLVAAKRFDEKP---QPSKCLVFEDAPNGVLGAKAAGMSCVM 129 (166)
Q Consensus 86 p~~~~~~~~~~~~~~~~---~~~~~i~IGD~~~Di~~a~~~G~~~i~ 129 (166)
.+...++.+++.+| + ++++++.|||+.+|+.+-+.+|...+.
T Consensus 187 sKg~al~~l~~~lg--i~~~~~~~viafGDs~NDi~Ml~~ag~gvAM 231 (271)
T PRK03669 187 GKDQAANWLIATYQ--QLSGTRPTTLGLGDGPNDAPLLDVMDYAVVV 231 (271)
T ss_pred CHHHHHHHHHHHHH--hhcCCCceEEEEcCCHHHHHHHHhCCEEEEe
Confidence 34788999999999 8 999999999999999999999975443
No 186
>PLN02887 hydrolase family protein
Probab=96.07 E-value=0.0072 Score=50.68 Aligned_cols=58 Identities=14% Similarity=0.192 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCC
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNS 149 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~ 149 (166)
+..+++.+++.+| +++++++.|||+.||+.+-+.+|.. +.+..+ .......++++..+
T Consensus 508 KG~ALk~L~e~lG--I~~eeviAFGDs~NDIeMLe~AG~g-VAMgNA--~eeVK~~Ad~VT~s 565 (580)
T PLN02887 508 KGNGVKMLLNHLG--VSPDEIMAIGDGENDIEMLQLASLG-VALSNG--AEKTKAVADVIGVS 565 (580)
T ss_pred HHHHHHHHHHHcC--CCHHHEEEEecchhhHHHHHHCCCE-EEeCCC--CHHHHHhCCEEeCC
Confidence 3678889999999 9999999999999999999999985 444443 22333445555433
No 187
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.95 E-value=0.065 Score=43.68 Aligned_cols=94 Identities=12% Similarity=0.051 Sum_probs=72.1
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCC-CccCCCCChHHHHHHHHHcCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADP-EVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~-~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..+|..+..++..|++.|+-++|.|-+....+...+.++ -|.++..+... ......|+.+-.+.++++++ +
T Consensus 254 G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~kh------p~MiLkeedfa~~~iNW~~K~eNirkIAkklN--l 325 (574)
T COG3882 254 GEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKH------PDMILKEEDFAVFQINWDPKAENIRKIAKKLN--L 325 (574)
T ss_pred chhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhC------CCeEeeHhhhhhheecCCcchhhHHHHHHHhC--C
Confidence 367777888999999999999999988877776666543 12233222000 11235788999999999999 8
Q ss_pred CCCceEEEecCHhHHHHHHHcCC
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGM 125 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~ 125 (166)
..+..+||+|++-..+-.++.+-
T Consensus 326 g~dSmvFiDD~p~ErE~vk~~~~ 348 (574)
T COG3882 326 GLDSMVFIDDNPAERELVKRELP 348 (574)
T ss_pred CccceEEecCCHHHHHHHHhcCc
Confidence 99999999999999999988875
No 188
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=95.77 E-value=0.018 Score=42.50 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=32.8
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
....+.+++.++...++.++++|||+.+|+.+.+.+|+..+
T Consensus 183 ~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 183 GKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFL 223 (225)
T ss_pred HHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence 55666777777622477799999999999999999998654
No 189
>PLN02382 probable sucrose-phosphatase
Probab=95.54 E-value=0.029 Score=45.22 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHc---CCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 87 APDVFLVAAKRF---DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 87 ~~~~~~~~~~~~---~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
+...++.+++++ + +++++++.+||+.||+..-+.+|...+.+...
T Consensus 176 Kg~Al~~L~~~~~~~g--i~~~~~iafGDs~NDleMl~~ag~~gvam~NA 223 (413)
T PLN02382 176 KGQALAYLLKKLKAEG--KAPVNTLVCGDSGNDAELFSVPDVYGVMVSNA 223 (413)
T ss_pred HHHHHHHHHHHhhhcC--CChhcEEEEeCCHHHHHHHhcCCCCEEEEcCC
Confidence 478899999999 8 89999999999999999999999777777554
No 190
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=95.31 E-value=0.096 Score=39.01 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=54.1
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHH---hhhcCcccccc-eEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKT---SRHKDTLKLFH-HVVLGSADPEVKQGKPAPDVFLVAAKRF 98 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l---~~~~gl~~~fd-~v~~~~~~~~~~~~Kp~~~~~~~~~~~~ 98 (166)
...+.||+.+|+++.-++|..|+.+||...+.-.... +...|+....+ .++--. ..|++..-...+.+
T Consensus 120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk------~~k~Ke~R~~~v~k-- 191 (274)
T COG2503 120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKK------DKKSKEVRRQAVEK-- 191 (274)
T ss_pred ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEee------CCCcHHHHHHHHhh--
Confidence 3678999999999999999999999999866511111 12245544332 111111 13444444444444
Q ss_pred CCCCCCCceEEEecCHhHHHHHH
Q psy6288 99 DEKPQPSKCLVFEDAPNGVLGAK 121 (166)
Q Consensus 99 ~~~~~~~~~i~IGD~~~Di~~a~ 121 (166)
+..-+++|||+..|.....
T Consensus 192 ----~~~iVm~vGDNl~DF~d~~ 210 (274)
T COG2503 192 ----DYKIVMLVGDNLDDFGDNA 210 (274)
T ss_pred ----ccceeeEecCchhhhcchh
Confidence 2456888999998875443
No 191
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=95.25 E-value=0.089 Score=43.35 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=64.7
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP 104 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 104 (166)
...||.+|-+.+|++-|++.+.+|+..+-.+..-..+ -|++++. ..++ |+--....++.+ ...
T Consensus 447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~E-AGVDdfi------------Aeat--PEdK~~~I~~eQ--~~g 509 (681)
T COG2216 447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAE-AGVDDFI------------AEAT--PEDKLALIRQEQ--AEG 509 (681)
T ss_pred hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHH-hCchhhh------------hcCC--hHHHHHHHHHHH--hcC
Confidence 5689999999999999999999999987666444444 4887754 1123 444455566666 567
Q ss_pred CceEEEecCHhHHHHHHHcCCeEE
Q psy6288 105 SKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 105 ~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
.=+.|.||+-+|..+-.++.+...
T Consensus 510 rlVAMtGDGTNDAPALAqAdVg~A 533 (681)
T COG2216 510 RLVAMTGDGTNDAPALAQADVGVA 533 (681)
T ss_pred cEEEEcCCCCCcchhhhhcchhhh
Confidence 779999999999888777765543
No 192
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.11 E-value=0.052 Score=41.10 Aligned_cols=54 Identities=24% Similarity=0.241 Sum_probs=41.7
Q ss_pred hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc
Q psy6288 15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF 69 (166)
Q Consensus 15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f 69 (166)
.|+++.+-. ..+.+.+.++|++|++.|++++++|+.+...+...+ +.+|+..++
T Consensus 9 ~DlDGTLl~~~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~-~~l~l~~~~ 64 (273)
T PRK00192 9 TDLDGTLLDHHTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLR-KELGLEDPF 64 (273)
T ss_pred EcCcccCcCCCCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCCCE
Confidence 456665553 457788999999999999999999999988775555 446876554
No 193
>KOG0206|consensus
Probab=94.87 E-value=0.15 Score=45.95 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=29.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKES 54 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~ 54 (166)
+.++.+|+.+.|+.|+++|++++++|+.-.+.
T Consensus 649 EDkLQdgVPetI~~L~~AGIKIWVLTGDK~ET 680 (1151)
T KOG0206|consen 649 EDKLQDGVPETIAKLAQAGIKIWVLTGDKQET 680 (1151)
T ss_pred echhccCchHHHHHHHHcCCEEEEEcCcHHHH
Confidence 67899999999999999999999999986554
No 194
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=94.46 E-value=0.061 Score=40.28 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
+....+.++++++ +++++++.+|||-+|+..- ..+...|.|...
T Consensus 166 K~~Al~~L~~~~~--~~~~~vl~aGDSgND~~mL-~~~~~~vvV~Na 209 (247)
T PF05116_consen 166 KGAALRYLMERWG--IPPEQVLVAGDSGNDLEML-EGGDHGVVVGNA 209 (247)
T ss_dssp HHHHHHHHHHHHT----GGGEEEEESSGGGHHHH-CCSSEEEE-TTS
T ss_pred HHHHHHHHHHHhC--CCHHHEEEEeCCCCcHHHH-cCcCCEEEEcCC
Confidence 4788999999999 9999999999999999888 778889988765
No 195
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=94.37 E-value=0.1 Score=38.54 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=38.9
Q ss_pred hhhhhhhcC-CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288 15 FDMDGLLLG-YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK 67 (166)
Q Consensus 15 ~~~~~~~~~-~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~ 67 (166)
.|+++.+.. ....+...++|++|+++|++++++|+.+...+...+ +.+|+..
T Consensus 4 ~DlDGTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~-~~lg~~~ 56 (225)
T TIGR02461 4 TDLDGTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYR-EELGVEP 56 (225)
T ss_pred EeCCCCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCC
Confidence 355664432 346678999999999999999999999988775544 4467754
No 196
>KOG0210|consensus
Probab=94.35 E-value=0.2 Score=42.88 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=75.0
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc---cccc-------------------------ceEEe
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT---LKLF-------------------------HHVVL 74 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl---~~~f-------------------------d~v~~ 74 (166)
+.++.++++..|+.|+.+|++++.+|+...+.+..-.... ++ ..+. .-++.
T Consensus 656 EDkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs-~L~sR~q~ihv~~~v~sr~dah~eL~~lR~k~~~aLvi~ 734 (1051)
T KOG0210|consen 656 EDKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSS-RLFSRGQYIHVIRSVTSRGDAHNELNNLRRKTDCALVID 734 (1051)
T ss_pred HHHHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhc-cceecCceEEEEEecCCchHHHHHHHHhhcCCCcEEEEc
Confidence 4678899999999999999999999998654432111110 11 0111 11111
Q ss_pred cCCC------------------CCc--cCCCCC-hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 75 GSAD------------------PEV--KQGKPA-PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 75 ~~~~------------------~~~--~~~Kp~-~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
+++= +.+ -.+.|. .+-.-+.+++.. ..++..|||+=+|+...+.+.+..-.++..
T Consensus 735 G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t----~krvc~IGDGGNDVsMIq~A~~GiGI~gkE 810 (1051)
T KOG0210|consen 735 GESLEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKT----GKRVCAIGDGGNDVSMIQAADVGIGIVGKE 810 (1051)
T ss_pred CchHHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhh----CceEEEEcCCCccchheeecccceeeeccc
Confidence 1100 000 012222 222334444444 478888999999999988876654444333
Q ss_pred CCCcccccccchhhCChhhhhhhhc
Q psy6288 134 TVPKHRTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (166)
+ .+..-.+|+-|..|..+..+|+
T Consensus 811 G--kQASLAADfSItqF~Hv~rLLl 833 (1051)
T KOG0210|consen 811 G--KQASLAADFSITQFSHVSRLLL 833 (1051)
T ss_pred c--cccchhccccHHHHHHHHHHhh
Confidence 2 2334567888888888777665
No 197
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=94.33 E-value=0.14 Score=38.97 Aligned_cols=50 Identities=8% Similarity=0.110 Sum_probs=44.9
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS 76 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~ 76 (166)
..|.+.+.|.+|++.|..+++=|-+..+++...+.+ +++..+||.++++.
T Consensus 143 r~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~-~~L~~~Fd~ii~~G 192 (297)
T PF05152_consen 143 RDPAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKE-LKLEGYFDIIICGG 192 (297)
T ss_pred CChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHH-hCCccccEEEEeCC
Confidence 579999999999999999999999999999777755 69999999998875
No 198
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=94.30 E-value=0.16 Score=38.24 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=42.6
Q ss_pred hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec
Q psy6288 15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG 75 (166)
Q Consensus 15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~ 75 (166)
.|+++.+-. ..+-+...++|++|+++|++++++|+.+...+...+ +.+++....+.++++
T Consensus 8 ~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~~~~~~I~~ 69 (270)
T PRK10513 8 IDMDGTLLLPDHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYL-KELHMEQPGDYCITN 69 (270)
T ss_pred EecCCcCcCCCCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHH-HHhCCCCCCCeEEEc
Confidence 456665542 457788999999999999999999999988775555 445765432334433
No 199
>KOG2469|consensus
Probab=94.30 E-value=0.13 Score=40.97 Aligned_cols=101 Identities=19% Similarity=0.129 Sum_probs=69.5
Q ss_pred HHHHHHHHCCCCEEEEeCCchhhHHHHHhhhc--CcccccceEEecCCCC---------------------------Ccc
Q psy6288 32 RLINHLHKHNIPFAIATSSAKESFELKTSRHK--DTLKLFHHVVLGSADP---------------------------EVK 82 (166)
Q Consensus 32 ~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~--gl~~~fd~v~~~~~~~---------------------------~~~ 82 (166)
.+|..+++.|.+..++||+...-...-...++ +...|||.++.....+ ...
T Consensus 205 ~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~p~e~ 284 (424)
T KOG2469|consen 205 PLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTGPLEQ 284 (424)
T ss_pred cchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCCcchh
Confidence 38999999999999999886554333333333 4667888765542000 112
Q ss_pred CCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHH-cCCeEEEecCCC
Q psy6288 83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKA-AGMSCVMVPDPT 134 (166)
Q Consensus 83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~-~G~~~i~v~~~~ 134 (166)
.+.+.......+...++ .....++++||.. .|+.-..+ -|+.+++|....
T Consensus 285 ~~~ySggs~~~~~~~l~--~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~peL 336 (424)
T KOG2469|consen 285 GGVYSGGSLKTVETSMK--VKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAPEL 336 (424)
T ss_pred cccCCcchHHHHHHHhc--ccccceeecccceeeeEEecceecceEEEEEehhh
Confidence 23345577888888899 8889999999988 66655544 688888887653
No 200
>PLN02580 trehalose-phosphatase
Probab=94.26 E-value=0.068 Score=42.63 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHcCCCCCCCc---eEEEecCHhHHHHHHHc-----CCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288 87 APDVFLVAAKRFDEKPQPSK---CLVFEDAPNGVLGAKAA-----GMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~---~i~IGD~~~Di~~a~~~-----G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (166)
+....+.+++.++ ++..+ .++|||..+|..+.+.. | ..|.|..+. ....+.+.+.+..++..+|.
T Consensus 302 KG~Av~~Ll~~~g--~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G-~~I~Vgn~~----~~t~A~y~L~dp~eV~~~L~ 374 (384)
T PLN02580 302 KGKAVEFLLESLG--LSNCDDVLPIYIGDDRTDEDAFKVLREGNRG-YGILVSSVP----KESNAFYSLRDPSEVMEFLK 374 (384)
T ss_pred HHHHHHHHHHhcC--CCcccceeEEEECCCchHHHHHHhhhccCCc-eEEEEecCC----CCccceEEcCCHHHHHHHHH
Confidence 3567788888888 66553 38999999999999863 4 345555431 12356788999999999988
Q ss_pred CCCCCC
Q psy6288 159 GLPPFE 164 (166)
Q Consensus 159 ~~~~~~ 164 (166)
.+..|+
T Consensus 375 ~L~~~~ 380 (384)
T PLN02580 375 SLVTWK 380 (384)
T ss_pred HHHHhh
Confidence 776654
No 201
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=93.53 E-value=0.15 Score=37.03 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=39.5
Q ss_pred hhhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288 15 FDMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK 67 (166)
Q Consensus 15 ~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~ 67 (166)
.|+++.+. +..+.|...+.|++|++.|++++++|+.+...+...+ +.+++..
T Consensus 6 ~DlDGTLl~~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~-~~l~~~~ 59 (215)
T TIGR01487 6 IDIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALA-VLIGTSG 59 (215)
T ss_pred EecCCCcCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHH-HHhCCCC
Confidence 35666544 2457899999999999999999999999988775544 4456653
No 202
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.48 E-value=0.72 Score=34.27 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=29.2
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT 65 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl 65 (166)
.++.||+.+.++.|++. .+-+|+|.+....+ ..+....|+
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy~-~r~a~~ig~ 121 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSYTQYL-RRTASMIGV 121 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccHHHHH-HHHHHhcCC
Confidence 68899999999999986 77778887775554 333344454
No 203
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=93.34 E-value=0.19 Score=36.58 Aligned_cols=50 Identities=24% Similarity=0.277 Sum_probs=36.9
Q ss_pred hhhhhhcCC-c-cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 16 DMDGLLLGY-N-LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 16 ~~~~~~~~~-~-~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
|+++.+-.. . ..+...++|+.|+++|++++++||.+...+...+ +.+++.
T Consensus 5 DlDGTLL~~~~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~-~~l~~~ 56 (221)
T TIGR02463 5 DLDGTLLDSHSYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQ-KALGLT 56 (221)
T ss_pred eCCCCCcCCCCCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 456644432 2 4455889999999999999999999988775554 546775
No 204
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=93.12 E-value=0.12 Score=44.68 Aligned_cols=62 Identities=18% Similarity=-0.021 Sum_probs=43.6
Q ss_pred HHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCC--eEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM--SCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL 160 (166)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~--~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (166)
...+.+++ + .+++.++++||+.+|..+.+.++. .++.++.+ ...+++++++..++...|..+
T Consensus 660 ~al~~ll~--~--~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~------~s~A~~~l~~~~eV~~~L~~l 723 (726)
T PRK14501 660 RAVRRLLE--A--GPYDFVLAIGDDTTDEDMFRALPETAITVKVGPG------ESRARYRLPSQREVRELLRRL 723 (726)
T ss_pred HHHHHHHh--c--CCCCEEEEECCCCChHHHHHhcccCceEEEECCC------CCcceEeCCCHHHHHHHHHHH
Confidence 34444444 4 678899999999999999998753 44555432 345678888888877776554
No 205
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=93.03 E-value=1.2 Score=31.03 Aligned_cols=106 Identities=16% Similarity=0.131 Sum_probs=59.4
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhh---c---Ccccccc-eEEecCCCC------CccCCCCC---
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRH---K---DTLKLFH-HVVLGSADP------EVKQGKPA--- 87 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~---~---gl~~~fd-~v~~~~~~~------~~~~~Kp~--- 87 (166)
...++|+.++.+.++++||++.-+|+.+.... ...... . |. .+.+ .++.+..+- ++-..+|.
T Consensus 26 d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa-~~Tr~~L~~~~q~~~-~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK 103 (157)
T PF08235_consen 26 DWTHPGAAELYRKIADNGYKILYLTARPIGQA-NRTRSWLAQHQQQGH-NLPDGPVLLSPDSLFSALHREVISKDPEEFK 103 (157)
T ss_pred hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHH-HHHHHHHHHHHhCCc-cCCCCCEEECCcchhhhhhccccccChHHHH
Confidence 36789999999999999999999999974332 222221 1 11 1112 233331000 12222332
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe--EEEecC
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS--CVMVPD 132 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~--~i~v~~ 132 (166)
...+..+...+.. ....=..-+|++.+|+.+-+++|++ -|++..
T Consensus 104 ~~~L~~l~~~f~~-~~~pf~agfGN~~tDv~aY~~vGip~~rIF~I~ 149 (157)
T PF08235_consen 104 IACLRDLRALFPP-DGNPFYAGFGNRSTDVIAYKAVGIPKSRIFIIN 149 (157)
T ss_pred HHHHHHHHHhcCC-CCCeEEEecCCcHHHHHHHHHcCCChhhEEEEC
Confidence 2333344444430 1122233489999999999999995 444433
No 206
>KOG4549|consensus
Probab=92.95 E-value=0.73 Score=30.93 Aligned_cols=84 Identities=12% Similarity=0.087 Sum_probs=59.8
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc---------cccceEEecCCCCCccCCCCChHHHH
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL---------KLFHHVVLGSADPEVKQGKPAPDVFL 92 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~---------~~fd~v~~~~~~~~~~~~Kp~~~~~~ 92 (166)
.....|+++...|..|++.|+.++++|++.........++.+.+. ..|+.+.-++ .-+...+.
T Consensus 41 ~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft~~~~g~--------gsklghfk 112 (144)
T KOG4549|consen 41 EEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFTFEAVGD--------GSKLGHFK 112 (144)
T ss_pred ceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCcccccchhhhcCceeeecC--------cccchhHH
Confidence 346789999999999999999999999998777766666655432 2344444444 11245667
Q ss_pred HHHHHcCCCCCCCceEEEecCHh
Q psy6288 93 VAAKRFDEKPQPSKCLVFEDAPN 115 (166)
Q Consensus 93 ~~~~~~~~~~~~~~~i~IGD~~~ 115 (166)
.+-+..+ ....+..+..|-.+
T Consensus 113 e~~n~s~--~~~k~~~~fdDesr 133 (144)
T KOG4549|consen 113 EFTNNSN--SIEKNKQVFDDESR 133 (144)
T ss_pred HHhhccC--cchhceeeeccccc
Confidence 7777777 67777777777654
No 207
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=92.87 E-value=0.27 Score=36.81 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=37.1
Q ss_pred hhhhhhcCC-c-cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 16 DMDGLLLGY-N-LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 16 ~~~~~~~~~-~-~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
|+++.+... . ..+...++|+.|+++|++++++|+.+...+...+ +.+|+.
T Consensus 5 DlDGTll~~~~~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~-~~~~~~ 56 (256)
T TIGR01486 5 DLDGTLLDPHGYDWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLR-KELGLE 56 (256)
T ss_pred cCCCCCcCCCCcCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence 455544432 2 4567899999999999999999999988775555 445764
No 208
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=92.82 E-value=0.25 Score=37.26 Aligned_cols=53 Identities=25% Similarity=0.286 Sum_probs=40.5
Q ss_pred hhhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc
Q psy6288 15 FDMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL 68 (166)
Q Consensus 15 ~~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~ 68 (166)
.|+++.+- +..+-+...++|++|+++|++++++|+.+...+...+ +.+++..+
T Consensus 7 ~DlDGTLl~~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~~ 61 (272)
T PRK15126 7 FDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHIL-GALSLDAY 61 (272)
T ss_pred EeCCCcCcCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCCc
Confidence 45666554 2457889999999999999999999999988775555 44577543
No 209
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=92.80 E-value=0.24 Score=38.15 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=40.6
Q ss_pred hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc
Q psy6288 15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF 69 (166)
Q Consensus 15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f 69 (166)
.|+++.+-+ ....+-+.++|++|+++|+++++.|+.....+.... +.+++..+|
T Consensus 6 tDLDGTLLd~~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~-~~Lgl~~p~ 61 (302)
T PRK12702 6 SSLDGSLLDLEFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLC-RQLRLEHPF 61 (302)
T ss_pred EeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCCCCeE
Confidence 356664442 446788999999999999999999999988875554 446776543
No 210
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=92.77 E-value=0.28 Score=36.61 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=38.0
Q ss_pred hhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 16 DMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 16 ~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
|+++.+.. ..+-+...++|++|+++|++++++|+.+...+...+.+ +++.
T Consensus 5 DlDGTLl~~~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~-~~~~ 56 (256)
T TIGR00099 5 DLDGTLLNDDHTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKE-LGLD 56 (256)
T ss_pred eCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHH-cCCC
Confidence 55664442 35678999999999999999999999998877555543 5664
No 211
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=92.65 E-value=0.81 Score=33.13 Aligned_cols=96 Identities=13% Similarity=0.115 Sum_probs=54.8
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc--c--ceEEecC-------CCCCccCCCCChHHHHH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL--F--HHVVLGS-------ADPEVKQGKPAPDVFLV 93 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~--f--d~v~~~~-------~~~~~~~~Kp~~~~~~~ 93 (166)
..+|++.+||+.+.+ .|.++|.|.+...-+...+.. +++... + ..+.... ........|+ +..
T Consensus 45 ~kRP~l~eFL~~~~~-~feIvVwTAa~~~ya~~~l~~-l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~ 118 (195)
T TIGR02245 45 LMRPYLHEFLTSAYE-DYDIVIWSATSMKWIEIKMTE-LGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGV 118 (195)
T ss_pred EeCCCHHHHHHHHHh-CCEEEEEecCCHHHHHHHHHH-hcccCCccceEEEEeccccceeeEeeccCcEEEee----cHH
Confidence 468999999999999 599999999987766555543 343210 1 1111110 0000001232 223
Q ss_pred HHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288 94 AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS 126 (166)
Q Consensus 94 ~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~ 126 (166)
+-.+++...+.+++++|.|++.-...--..|+.
T Consensus 119 lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~ 151 (195)
T TIGR02245 119 IWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLK 151 (195)
T ss_pred hhhhcccCCCcccEEEEeCCHHHHhcCCCCccc
Confidence 333554113779999999999654433334443
No 212
>PRK10976 putative hydrolase; Provisional
Probab=92.38 E-value=0.31 Score=36.54 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=39.4
Q ss_pred hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288 15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK 67 (166)
Q Consensus 15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~ 67 (166)
.|+++.+-. ..+-+...++|++|+++|++++++|+.+...+...+ +.+++..
T Consensus 7 ~DlDGTLl~~~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 60 (266)
T PRK10976 7 SDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIR-DNLEIKS 60 (266)
T ss_pred EeCCCCCcCCCCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence 356664442 357788999999999999999999999988775544 4467654
No 213
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=92.29 E-value=0.73 Score=35.51 Aligned_cols=36 Identities=14% Similarity=0.028 Sum_probs=31.1
Q ss_pred CCccchhHHHHHHHHHHCC-CCEEEEeCCchhhHHHH
Q psy6288 23 GYNLAIGALRLINHLHKHN-IPFAIATSSAKESFELK 58 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g-~~i~ivS~~~~~~~~~~ 58 (166)
+..++|.+-++++.+++.| ++++++||++.+.+...
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpdv~~~ 126 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPDVLEE 126 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHHHHHH
Confidence 6789999999999999999 79999999998644333
No 214
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=92.20 E-value=0.28 Score=43.27 Aligned_cols=67 Identities=15% Similarity=0.003 Sum_probs=46.6
Q ss_pred hHHHHHHHH---HcCCCCCCCceEEEecCHhHHHHHHHcCC-------------eEEEecCCCCCcccccccchhhCChh
Q psy6288 88 PDVFLVAAK---RFDEKPQPSKCLVFEDAPNGVLGAKAAGM-------------SCVMVPDPTVPKHRTEAADLVLNSLE 151 (166)
Q Consensus 88 ~~~~~~~~~---~~~~~~~~~~~i~IGD~~~Di~~a~~~G~-------------~~i~v~~~~~~~~~~~~~~~~~~~~~ 151 (166)
....+.+++ .++ .+++.+++|||..+|..+-+.++- -+|.|..+ ...+.+.+++..
T Consensus 764 G~Al~~Ll~~~~~~g--~~~d~vl~~GDD~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~~------~S~A~y~L~d~~ 835 (854)
T PLN02205 764 GLVAKRLLSIMQERG--MLPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTVGQK------PSKAKYYLDDTA 835 (854)
T ss_pred HHHHHHHHHHHHhcC--CCcccEEEEcCCccHHHHHHHhhhhccCCcccccccceeEEECCC------CccCeEecCCHH
Confidence 344455543 357 789999999999999999888762 34445332 345567888888
Q ss_pred hhhhhhcCCCC
Q psy6288 152 EFKPELYGLPP 162 (166)
Q Consensus 152 ~l~~~l~~~~~ 162 (166)
++..+|.++..
T Consensus 836 eV~~lL~~L~~ 846 (854)
T PLN02205 836 EIVRLMQGLAS 846 (854)
T ss_pred HHHHHHHHHHh
Confidence 88888776543
No 215
>KOG3107|consensus
Probab=92.15 E-value=0.62 Score=37.00 Aligned_cols=78 Identities=18% Similarity=0.149 Sum_probs=54.3
Q ss_pred EEEEeCCc-hhhHHHHHhhhcCccccc--ceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHH
Q psy6288 44 FAIATSSA-KESFELKTSRHKDTLKLF--HHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGA 120 (166)
Q Consensus 44 i~ivS~~~-~~~~~~~l~~~~gl~~~f--d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a 120 (166)
-++||+.- .+.+.+.++ +||...| +.|.++. ..+| ..-|++|++++| . .-.-++|||+...-.+|
T Consensus 373 nVlvTttqLipalaKvLL--~gLg~~fpiENIYSa~-----kiGK--escFerI~~RFg--~-K~~yvvIgdG~eee~aA 440 (468)
T KOG3107|consen 373 NVLVTTTQLIPALAKVLL--YGLGSSFPIENIYSAT-----KIGK--ESCFERIQSRFG--R-KVVYVVIGDGVEEEQAA 440 (468)
T ss_pred EEEEeccchhHHHHHHHH--HhcCCcccchhhhhhh-----hccH--HHHHHHHHHHhC--C-ceEEEEecCcHHHHHHH
Confidence 45566554 333434444 3665554 4555544 2333 788999999999 4 67778899999999999
Q ss_pred HHcCCeEEEecCC
Q psy6288 121 KAAGMSCVMVPDP 133 (166)
Q Consensus 121 ~~~G~~~i~v~~~ 133 (166)
++..|+..-+...
T Consensus 441 K~ln~PfwrI~~h 453 (468)
T KOG3107|consen 441 KALNMPFWRISSH 453 (468)
T ss_pred HhhCCceEeeccC
Confidence 9999998887544
No 216
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=92.13 E-value=0.36 Score=35.24 Aligned_cols=50 Identities=22% Similarity=0.291 Sum_probs=38.4
Q ss_pred hhhhhhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 16 DMDGLLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 16 ~~~~~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
|+++.+. ...+-|...++|+.|+++|+++++.|+.+...+...+. .+++.
T Consensus 4 DlDGTLl~~~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~-~~~~~ 55 (254)
T PF08282_consen 4 DLDGTLLNSDGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLK-ELGID 55 (254)
T ss_dssp ECCTTTCSTTSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHH-HTTHC
T ss_pred EECCceecCCCeeCHHHHHHHHhhcccceEEEEEccCcccccccccc-cccch
Confidence 4555442 34577999999999999999999999999887755544 45665
No 217
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=91.85 E-value=0.36 Score=36.19 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=39.6
Q ss_pred hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288 15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK 67 (166)
Q Consensus 15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~ 67 (166)
.|+++.+-. ..+.|...++|++|+++|++++++|+.+...+...+ +.+++..
T Consensus 8 ~DlDGTLl~~~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~ 61 (272)
T PRK10530 8 LDLDGTLLTPKKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFY-QALALDT 61 (272)
T ss_pred EeCCCceECCCCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence 456665543 357888999999999999999999999988775554 4456653
No 218
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=91.39 E-value=0.45 Score=34.61 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=37.8
Q ss_pred hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
.|+++.+.. ..+.+...++|++|++.|++++++|+.+...+...+ +.+++.
T Consensus 3 ~DlDGTLl~~~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~-~~l~~~ 55 (225)
T TIGR01482 3 SDIDGTLTDPNRAINESALEAIRKAESVGIPVVLVTGNSVQFARALA-KLIGTP 55 (225)
T ss_pred EeccCccCCCCcccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCC
Confidence 355665442 346788899999999999999999999988775544 445643
No 219
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=91.29 E-value=0.46 Score=34.06 Aligned_cols=45 Identities=18% Similarity=0.312 Sum_probs=35.4
Q ss_pred hhhhhhcC---CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHh
Q psy6288 16 DMDGLLLG---YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTS 60 (166)
Q Consensus 16 ~~~~~~~~---~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~ 60 (166)
|+++.+.. ..+-+.+.++|++|++.|.+++++|+.+...+...+.
T Consensus 5 D~DgTL~~~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~ 52 (204)
T TIGR01484 5 DLDGTLLDPNAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLK 52 (204)
T ss_pred eCcCCCcCCCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
Confidence 45554442 3577999999999999999999999999887755543
No 220
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=91.09 E-value=3 Score=31.50 Aligned_cols=64 Identities=13% Similarity=0.204 Sum_probs=43.9
Q ss_pred hHHHHHHHHHcCCCCCCCceEEE------ecCHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcCCC
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVF------EDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGLP 161 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~I------GD~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 161 (166)
.+.-..++++++ ++ +++- |-...=+.+|++.|++.+.|.++. ...+..+++++.++..++.+..
T Consensus 186 ~e~n~al~~~~~--i~---~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~-----~~~~~~~~~~~~el~~~l~~~~ 255 (256)
T TIGR00715 186 EELEKALLREYR--ID---AVVTKASGEQGGELEKVKAAEALGINVIRIARPQ-----TIPGVAIFDDISQLNQFVARLL 255 (256)
T ss_pred HHHHHHHHHHcC--CC---EEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCC-----CCCCCccCCCHHHHHHHHHHhc
Confidence 344566677777 22 2332 233566899999999999998883 2333467789999999887654
No 221
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=90.98 E-value=1.5 Score=34.20 Aligned_cols=88 Identities=9% Similarity=0.051 Sum_probs=58.6
Q ss_pred CCccchhHHHHHHHHHHCC-CCEEEEeCCchhhHHHHHhhhcC---c----------ccccceEEecCCCCCccCCCCCh
Q psy6288 23 GYNLAIGALRLINHLHKHN-IPFAIATSSAKESFELKTSRHKD---T----------LKLFHHVVLGSADPEVKQGKPAP 88 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g-~~i~ivS~~~~~~~~~~l~~~~g---l----------~~~fd~v~~~~~~~~~~~~Kp~~ 88 (166)
.-.++||+-.+.+.|.+.| .+++-+||++.... ..|.+.++ + ...|+.++.+. ..-+.
T Consensus 194 tr~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f-~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sg-------a~rK~ 265 (373)
T COG4850 194 TRQVIPGVSAWYRALTNLGDAPVFYVSNSPWQLF-PTLQEFITNRNFPYGPLLLRRWGGVLDNIIESG-------AARKG 265 (373)
T ss_pred ccCCCCCHHHHHHHHHhcCCCCeEEecCChhHhH-HHHHHHHhcCCCCCCchhHhhcCCcccccccch-------hhhcc
Confidence 3578999999999999887 89999999986543 22222211 1 12345544443 12235
Q ss_pred HHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHH
Q psy6288 89 DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKA 122 (166)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~ 122 (166)
..++.+++++. ..+.+.|||+= .|.+.-.+
T Consensus 266 ~~l~nil~~~p----~~kfvLVGDsGE~DpeIYae 296 (373)
T COG4850 266 QSLRNILRRYP----DRKFVLVGDSGEHDPEIYAE 296 (373)
T ss_pred cHHHHHHHhCC----CceEEEecCCCCcCHHHHHH
Confidence 66777888887 78899999965 77665433
No 222
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=90.83 E-value=1.7 Score=29.18 Aligned_cols=30 Identities=10% Similarity=0.216 Sum_probs=26.4
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKES 54 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~ 54 (166)
.+.+++.+.|++|++.|+.++++|+.+...
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~ 53 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRT 53 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence 467899999999999999999999998654
No 223
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=90.41 E-value=0.92 Score=34.26 Aligned_cols=51 Identities=18% Similarity=0.167 Sum_probs=38.2
Q ss_pred hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
.|+++.+-. ..+.+...++|++|+++|+++++.|+.+...+...+.+ +|+.
T Consensus 12 ~DlDGTLL~~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~-l~~~ 64 (271)
T PRK03669 12 TDLDGTLLDSHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQT-LGLQ 64 (271)
T ss_pred EeCccCCcCCCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHH-hCCC
Confidence 456665443 23457788999999999999999999998877555544 5764
No 224
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=89.94 E-value=0.71 Score=33.97 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=33.1
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288 30 ALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS 76 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~ 76 (166)
+.++|..|++. +.++|||++..+.+..++.. ..+...||++++..
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~eQl~~-~~~~~~fdy~f~en 45 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQEQLGG-DDVLDNFDYVFPEN 45 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHHHHHST-TTHHHH-SEEEEGG
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHHHHHcc-cchHhhCCeeecCC
Confidence 46889999985 99999999999988777742 13556688887764
No 225
>KOG1618|consensus
Probab=89.88 E-value=1.1 Score=35.01 Aligned_cols=96 Identities=22% Similarity=0.255 Sum_probs=58.9
Q ss_pred hhhhhh-cCCccchhHHHHHHHHHHC----CCCEEEEeCCchhhHH---HHHhhhcCcccccceEEecCCCCCccCCCCC
Q psy6288 16 DMDGLL-LGYNLAIGALRLINHLHKH----NIPFAIATSSAKESFE---LKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87 (166)
Q Consensus 16 ~~~~~~-~~~~~~~g~~~~l~~l~~~----g~~i~ivS~~~~~~~~---~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~ 87 (166)
|+++.+ ....+.|++.++|+.|.++ .++.+++||+..-.-. ..+.+.+|..---|.++-+.
T Consensus 41 DIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqviqSH----------- 109 (389)
T KOG1618|consen 41 DIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVIQSH----------- 109 (389)
T ss_pred ecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHHhhc-----------
Confidence 344432 3467899999999999988 8899999998522211 23333333332222222222
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM 129 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~ 129 (166)
..|+... ++ .-++++++|+... ...|+..|++.|.
T Consensus 110 -sP~r~l~-~~----~~k~vLv~G~~~v-r~vAegyGFk~Vv 144 (389)
T KOG1618|consen 110 -SPFRLLV-EY----HYKRVLVVGQGSV-REVAEGYGFKNVV 144 (389)
T ss_pred -ChHHHHh-hh----hhceEEEecCCcH-HHHhhccCcccee
Confidence 1133333 33 3688999997653 6788999998664
No 226
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=89.50 E-value=1.4 Score=31.13 Aligned_cols=92 Identities=10% Similarity=-0.013 Sum_probs=51.6
Q ss_pred cchhHHHHHHHHH---HCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 26 LAIGALRLINHLH---KHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 26 ~~~g~~~~l~~l~---~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
+.....|.|+.|+ +.+-++++++......-...+.+.+|+.-. . +... ++.-++..++++.
T Consensus 59 I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~--~-~~~~----------~~~e~~~~i~~~~--- 122 (176)
T PF06506_consen 59 IPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIK--I-YPYD----------SEEEIEAAIKQAK--- 122 (176)
T ss_dssp E---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEE--E-EEES----------SHHHHHHHHHHHH---
T ss_pred ECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceE--E-EEEC----------CHHHHHHHHHHHH---
Confidence 3445555555554 457789999876544333455555555221 1 1111 1444566666654
Q ss_pred CCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 103 QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 103 ~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
...--++||++.. ...|++.|++++++..+.
T Consensus 123 ~~G~~viVGg~~~-~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 123 AEGVDVIVGGGVV-CRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HTT--EEEESHHH-HHHHHHTTSEEEESS--H
T ss_pred HcCCcEEECCHHH-HHHHHHcCCcEEEEEecH
Confidence 2335678999875 789999999999997763
No 227
>KOG2134|consensus
Probab=89.34 E-value=1.6 Score=34.88 Aligned_cols=102 Identities=14% Similarity=0.042 Sum_probs=66.6
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhh--------HHHHHhhhc-CcccccceEEecCCCCCccCCCCChHHHHHH
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKES--------FELKTSRHK-DTLKLFHHVVLGSADPEVKQGKPAPDVFLVA 94 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~--------~~~~l~~~~-gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~ 94 (166)
..+++.+..=|+.|.+.|+.++|.||..... ...++.... .+.-.|......- ....+||...|++..
T Consensus 103 ~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~vPi~~~~A~~---~~~yRKP~tGMwe~~ 179 (422)
T KOG2134|consen 103 RILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGVPIQLLAAII---KGKYRKPSTGMWEFL 179 (422)
T ss_pred eeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCCceEEeeecc---CCcccCcchhHHHHH
Confidence 3467888888999999999999999885322 222222211 1222333333333 457899999999999
Q ss_pred HHHcCCC--CCCCceEEEec---------------CHhHHHHHHHcCCeEE
Q psy6288 95 AKRFDEK--PQPSKCLVFED---------------APNGVLGAKAAGMSCV 128 (166)
Q Consensus 95 ~~~~~~~--~~~~~~i~IGD---------------~~~Di~~a~~~G~~~i 128 (166)
.+.++.. +.-..++|+|| +..|+..|.++|+...
T Consensus 180 ~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 180 KRLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred HHHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 9887732 33444557776 3368999999997643
No 228
>KOG0209|consensus
Probab=89.01 E-value=1.7 Score=38.28 Aligned_cols=109 Identities=16% Similarity=0.085 Sum_probs=68.3
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCC------------CC-Cc---cCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSA------------DP-EV---KQGKP 86 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~------------~~-~~---~~~Kp 86 (166)
++++.|+++..|+.|.+++.+++.+|+...-.++....+ .|+..--..+..-.. |+ .. ...++
T Consensus 673 ~CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~-v~iv~k~~~vl~~~~~~~~~~~~w~s~d~t~~lp~~p~~~ 751 (1160)
T KOG0209|consen 673 SCPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKE-VGIVEKPTLVLDLPEEGDGNQLEWVSVDGTIVLPLKPGKK 751 (1160)
T ss_pred eCCCCccHHHHHHHHhccCceEEEEeCCCccchheehhe-eeeeccCceeeccCccCCCceeeEecCCCceeecCCCCcc
Confidence 689999999999999999999999999986655444333 354321001100000 00 00 11111
Q ss_pred Ch---------------------------------------HHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeE
Q psy6288 87 AP---------------------------------------DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSC 127 (166)
Q Consensus 87 ~~---------------------------------------~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~ 127 (166)
+. .--+.++..+. --...++|.||+-+|+-+-+.+.+..
T Consensus 752 ~~~l~~~~dlcitG~~l~~l~~~~~l~~l~~hv~VfARvaP~QKE~ii~tlK--~~Gy~TLMCGDGTNDVGALK~AhVGV 829 (1160)
T KOG0209|consen 752 KTLLAETHDLCITGSALDHLQATDQLRRLIPHVWVFARVAPKQKEFIITTLK--KLGYVTLMCGDGTNDVGALKQAHVGV 829 (1160)
T ss_pred chhhhhhhhhhcchhHHHHHhhhHHHHHhhhheeEEEeeChhhHHHHHHHHH--hcCeEEEEecCCCcchhhhhhcccce
Confidence 11 11122334444 34567999999999999999999988
Q ss_pred EEecCCC
Q psy6288 128 VMVPDPT 134 (166)
Q Consensus 128 i~v~~~~ 134 (166)
.+...+.
T Consensus 830 ALL~~~~ 836 (1160)
T KOG0209|consen 830 ALLNNPE 836 (1160)
T ss_pred ehhcCCh
Confidence 8887665
No 229
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=88.90 E-value=6.9 Score=29.28 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=56.6
Q ss_pred HCCCCEEEEeCCch---hhHHHHHhhhc-CcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH
Q psy6288 39 KHNIPFAIATSSAK---ESFELKTSRHK-DTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP 114 (166)
Q Consensus 39 ~~g~~i~ivS~~~~---~~~~~~l~~~~-gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~ 114 (166)
+.++.+.++|++.. +.+.......+ .+..-| .|+.|. +..-|.|...+.+++.-+ + .|++|||.+
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf-~i~isP-----N~a~PGP~~ARE~l~~~~--i---P~IvI~D~p 97 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDF-VIVISP-----NPAAPGPKKAREILKAAG--I---PCIVIGDAP 97 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCE-EEEECC-----CCCCCCchHHHHHHHhcC--C---CEEEEcCCC
Confidence 35899999998853 22322222211 233333 345544 346778888999999888 5 699999987
Q ss_pred --hHHHHHHHcCCeEEEecCC
Q psy6288 115 --NGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 115 --~Di~~a~~~G~~~i~v~~~ 133 (166)
.+...-.+.|+..|.+...
T Consensus 98 ~~K~~d~l~~~g~GYIivk~D 118 (277)
T PRK00994 98 GKKVKDAMEEQGLGYIIVKAD 118 (277)
T ss_pred ccchHHHHHhcCCcEEEEecC
Confidence 6778888899998888654
No 230
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=88.69 E-value=2.2 Score=33.35 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=28.8
Q ss_pred cCCccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288 22 LGYNLAIGALRLINHLHKHNIPFAIATSSAKES 54 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~ 54 (166)
.+..++|.+.++++.+++.|+.+.+.||+....
T Consensus 139 GEPlL~p~l~eli~~~k~~Gi~~~L~TNG~~~e 171 (322)
T PRK13762 139 GEPTLYPYLPELIEEFHKRGFTTFLVTNGTRPD 171 (322)
T ss_pred ccccchhhHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 456678999999999999999999999997653
No 231
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=88.65 E-value=4.9 Score=33.71 Aligned_cols=88 Identities=7% Similarity=-0.047 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceE
Q psy6288 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCL 108 (166)
Q Consensus 29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i 108 (166)
++...|..+++.+-++++++-.........+.+.+++.- +.+.... .+-....++++. ...--+
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i--~~~~~~~-----------~~e~~~~~~~l~---~~G~~~ 148 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDI--VQRSYVT-----------EEDARSCVNDLR---ARGIGA 148 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce--EEEEecC-----------HHHHHHHHHHHH---HCCCCE
Confidence 344455555666778999987654443345555444432 2211111 222344444443 233457
Q ss_pred EEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 109 VFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 109 ~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
+|||+.. ...|++.|++++++..+
T Consensus 149 viG~~~~-~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 149 VVGAGLI-TDLAEQAGLHGVFLYSA 172 (526)
T ss_pred EECChHH-HHHHHHcCCceEEEecH
Confidence 7899976 78899999999999775
No 232
>PTZ00174 phosphomannomutase; Provisional
Probab=87.92 E-value=1.1 Score=33.39 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=35.3
Q ss_pred hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHH
Q psy6288 15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKT 59 (166)
Q Consensus 15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l 59 (166)
.|+++.+-. ..+-|...++|++++++|++++++|+.+...+...+
T Consensus 10 ~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l 56 (247)
T PTZ00174 10 FDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQL 56 (247)
T ss_pred EECcCCCcCCCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 456665442 457788999999999999999999999887665444
No 233
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=87.80 E-value=1.3 Score=38.18 Aligned_cols=42 Identities=10% Similarity=0.063 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHcCCCCCCCceEEE--ecCHhHHHHHHHcCCeEEE
Q psy6288 86 PAPDVFLVAAKRFDEKPQPSKCLVF--EDAPNGVLGAKAAGMSCVM 129 (166)
Q Consensus 86 p~~~~~~~~~~~~~~~~~~~~~i~I--GD~~~Di~~a~~~G~~~i~ 129 (166)
.+...++.+++.++ ++.++++.| ||+.+|+..-+.+|...+.
T Consensus 613 dKG~AL~~L~e~~g--I~~~eViafalGDs~NDisMLe~Ag~gVAM 656 (694)
T PRK14502 613 DKGKAIKILNELFR--LNFGNIHTFGLGDSENDYSMLETVDSPILV 656 (694)
T ss_pred CHHHHHHHHHHHhC--CCccceEEEEcCCcHhhHHHHHhCCceEEE
Confidence 34788899999999 888888888 9999999999999996554
No 234
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=87.50 E-value=2.1 Score=30.34 Aligned_cols=39 Identities=8% Similarity=0.093 Sum_probs=29.9
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR 61 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~ 61 (166)
+..+++.+.++++.+++.|+.+.+.||+........+.+
T Consensus 72 EPll~~~l~~li~~~~~~g~~v~i~TNg~~~~~l~~l~~ 110 (191)
T TIGR02495 72 EPTLQAGLPDFLRKVRELGFEVKLDTNGSNPRVLEELLE 110 (191)
T ss_pred cccCcHhHHHHHHHHHHCCCeEEEEeCCCCHHHHHHHHh
Confidence 456678899999999999999999999975433333333
No 235
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=87.38 E-value=11 Score=28.54 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=56.5
Q ss_pred CCccchhHHHHHHHHHHCCCCEE-EEeCCchh-hHHHHHhhhcCcccccceEEecCCCCCccCC-CCCh---HHHHHHHH
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFA-IATSSAKE-SFELKTSRHKDTLKLFHHVVLGSADPEVKQG-KPAP---DVFLVAAK 96 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~-ivS~~~~~-~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~-Kp~~---~~~~~~~~ 96 (166)
...+.+...++++.+++.|+..+ +++..+.. .+ ..+.+ ..+=|-++++.. +..+.. .-.+ +.++.+.+
T Consensus 122 pDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri-~~i~~---~~~gfiy~vs~~--G~TG~~~~~~~~~~~~i~~lr~ 195 (256)
T TIGR00262 122 ADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERL-KQIAE---KSQGFVYLVSRA--GVTGARNRAASALNELVKRLKA 195 (256)
T ss_pred CCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHH-HHHHH---hCCCCEEEEECC--CCCCCcccCChhHHHHHHHHHh
Confidence 45566788899999999998855 66665533 23 23322 223244555543 012221 1122 22333333
Q ss_pred HcCCCCCCCceEEEecCH---hHHHHHHHcCCeEEEecCCC
Q psy6288 97 RFDEKPQPSKCLVFEDAP---NGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 97 ~~~~~~~~~~~i~IGD~~---~Di~~a~~~G~~~i~v~~~~ 134 (166)
..+ . -+++|=+. .++..+.+.|...+.|.+..
T Consensus 196 ~~~--~----pi~vgfGI~~~e~~~~~~~~GADgvVvGSai 230 (256)
T TIGR00262 196 YSA--K----PVLVGFGISKPEQVKQAIDAGADGVIVGSAI 230 (256)
T ss_pred hcC--C----CEEEeCCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 222 2 37778755 58888888999998887653
No 236
>PLN02151 trehalose-phosphatase
Probab=87.38 E-value=0.7 Score=36.57 Aligned_cols=71 Identities=11% Similarity=0.008 Sum_probs=45.1
Q ss_pred hHHHHHHHHHcCCCCCCC---ceEEEecCHhHHHHHHHcC----CeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288 88 PDVFLVAAKRFDEKPQPS---KCLVFEDAPNGVLGAKAAG----MSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL 160 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~---~~i~IGD~~~Di~~a~~~G----~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (166)
-...+.+++.++ .... -.+||||..+|-.+.+... --.|.|..+. ....+.+.+.+..++..+|.++
T Consensus 271 G~Av~~Ll~~~~--~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~Vg~~~----k~T~A~y~L~dp~eV~~~L~~L 344 (354)
T PLN02151 271 GKALEFLLESLG--YANCTDVFPIYIGDDRTDEDAFKILRDKKQGLGILVSKYA----KETNASYSLQEPDEVMEFLERL 344 (354)
T ss_pred HHHHHHHHHhcc--cccCCCCeEEEEcCCCcHHHHHHHHhhcCCCccEEeccCC----CCCcceEeCCCHHHHHHHHHHH
Confidence 344555565555 3322 3799999999887776542 1245554321 2246678899999999888777
Q ss_pred CCCC
Q psy6288 161 PPFE 164 (166)
Q Consensus 161 ~~~~ 164 (166)
..|+
T Consensus 345 ~~~~ 348 (354)
T PLN02151 345 VEWK 348 (354)
T ss_pred HHhh
Confidence 6554
No 237
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=86.31 E-value=2.7 Score=28.96 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=32.7
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS 76 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~ 76 (166)
...+.+.++++.+++.|+++.+.||...+.....+ ...+|.++.+.
T Consensus 72 l~~~~l~~ll~~lk~~Gl~i~l~Tg~~~~~~~~~i------l~~iD~l~~g~ 117 (147)
T TIGR02826 72 WNREALLSLLKIFKEKGLKTCLYTGLEPKDIPLEL------VQHLDYLKTGR 117 (147)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH------HHhCCEEEECh
Confidence 34577999999999999999999997654332232 23456666665
No 238
>KOG1618|consensus
Probab=86.30 E-value=0.67 Score=36.08 Aligned_cols=56 Identities=23% Similarity=0.273 Sum_probs=40.7
Q ss_pred ccCCCCChHHHHHHHH-------HcCCCCCCCceEEEecCH-hHHHHHH---------------HcCCeEEEecCCCCC
Q psy6288 81 VKQGKPAPDVFLVAAK-------RFDEKPQPSKCLVFEDAP-NGVLGAK---------------AAGMSCVMVPDPTVP 136 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~-------~~~~~~~~~~~i~IGD~~-~Di~~a~---------------~~G~~~i~v~~~~~~ 136 (166)
...+||.+-.|+.+.. +.+...++.+..||||++ +|+..|. +.||.+|+|.+|..+
T Consensus 267 ~t~GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~TGV~~ 345 (389)
T KOG1618|consen 267 TTLGKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVRTGVYN 345 (389)
T ss_pred cccCCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEeeeeec
Confidence 4668998766554322 222124678899999999 9999996 778999999987543
No 239
>PLN03017 trehalose-phosphatase
Probab=86.23 E-value=1.1 Score=35.72 Aligned_cols=71 Identities=11% Similarity=-0.026 Sum_probs=47.7
Q ss_pred hHHHHHHHHHcCCCCC---CCceEEEecCHhHHHHHHHcC----CeEEEecCCCCCcccccccchhhCChhhhhhhhcCC
Q psy6288 88 PDVFLVAAKRFDEKPQ---PSKCLVFEDAPNGVLGAKAAG----MSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYGL 160 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~---~~~~i~IGD~~~Di~~a~~~G----~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 160 (166)
-...+.+++.++ .. ..-.+||||..+|-.+.+... .-.|.|+... ....+.+.+.+..++.++|..+
T Consensus 285 G~Av~~LL~~l~--~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG~~~----k~T~A~y~L~dp~eV~~fL~~L 358 (366)
T PLN03017 285 GKALEFLLESLG--FGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVSKFP----KDTDASYSLQDPSEVMDFLARL 358 (366)
T ss_pred HHHHHHHHHhcc--cccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEECCCC----CCCcceEeCCCHHHHHHHHHHH
Confidence 355666666666 33 235899999999988877652 3466665321 1245678888999999888877
Q ss_pred CCCC
Q psy6288 161 PPFE 164 (166)
Q Consensus 161 ~~~~ 164 (166)
..|+
T Consensus 359 ~~~~ 362 (366)
T PLN03017 359 VEWK 362 (366)
T ss_pred HHHH
Confidence 6554
No 240
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=86.13 E-value=10 Score=28.58 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=70.5
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh-hcCcccccceEEecCCCCCccC----------CCC-ChHHH
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR-HKDTLKLFHHVVLGSADPEVKQ----------GKP-APDVF 91 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~-~~gl~~~fd~v~~~~~~~~~~~----------~Kp-~~~~~ 91 (166)
+....+..++.+.+.+.+..-+++|.+++... .+.. ...-..+|-.+.... +... .-| +.+.-
T Consensus 112 ~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~--~f~~~~~~~~r~~~RvLp~~---~~~~g~~~~~iia~~GPfs~e~n 186 (249)
T PF02571_consen 112 WHYVDSYEEAAELLKELGGGRIFLTTGSKNLP--PFVPAPLPGERLFARVLPTP---ESALGFPPKNIIAMQGPFSKELN 186 (249)
T ss_pred EEEeCCHHHHHHHHhhcCCCCEEEeCchhhHH--HHhhcccCCCEEEEEECCCc---cccCCCChhhEEEEeCCCCHHHH
Confidence 55678888999999888866666666664432 2211 112223333333332 1111 122 23455
Q ss_pred HHHHHHcCCCCCCCceEEEecC-----HhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhc
Q psy6288 92 LVAAKRFDEKPQPSKCLVFEDA-----PNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELY 158 (166)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~IGD~-----~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (166)
...+++++ ++ +++-=|| ..=+.+|++.|++.+.+.++. ...+..+++++.++..++.
T Consensus 187 ~al~~~~~--i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~-----~~~~~~~~~~~~e~l~~l~ 248 (249)
T PF02571_consen 187 RALFRQYG--ID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPP-----EPYGDPVVETIEELLDWLE 248 (249)
T ss_pred HHHHHHcC--CC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC-----CCCCCcccCCHHHHHHHHh
Confidence 56777777 32 3332221 244899999999999998884 2334455789999988874
No 241
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=86.09 E-value=13 Score=28.06 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=66.4
Q ss_pred CCccchhHHHHHHHHHHC---CCCEEEEeCCchhhHHHHHhhhcCcccccc--eEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288 23 GYNLAIGALRLINHLHKH---NIPFAIATSSAKESFELKTSRHKDTLKLFH--HVVLGSADPEVKQGKPAPDVFLVAAKR 97 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~---g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd--~v~~~~~~~~~~~~Kp~~~~~~~~~~~ 97 (166)
...++|+..+.++..+.. |+.+.-+++.+.... +.+.+. |-.-..- .-+++. .+-.+++.++.+.+.
T Consensus 102 ~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~a-r~l~~~-G~~~vmPlg~pIGsg------~Gi~~~~~I~~I~e~ 173 (248)
T cd04728 102 DKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLA-KRLEDA-GCAAVMPLGSPIGSG------QGLLNPYNLRIIIER 173 (248)
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHHc-CCCEeCCCCcCCCCC------CCCCCHHHHHHHHHh
Confidence 456789999999888876 999997777775544 565553 5432211 122222 223347788877766
Q ss_pred cCCCCCCCceEEEec---CHhHHHHHHHcCCeEEEecCCCCC
Q psy6288 98 FDEKPQPSKCLVFED---APNGVLGAKAAGMSCVMVPDPTVP 136 (166)
Q Consensus 98 ~~~~~~~~~~i~IGD---~~~Di~~a~~~G~~~i~v~~~~~~ 136 (166)
.+ + .+++|- ++.|+..|.+.|+..+++++....
T Consensus 174 ~~--v----pVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 174 AD--V----PVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred CC--C----cEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 44 2 255655 469999999999999999988643
No 242
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=85.58 E-value=1.4 Score=32.79 Aligned_cols=31 Identities=19% Similarity=0.065 Sum_probs=27.5
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
+..+++++.++++.+++.|+++.+-||+...
T Consensus 82 EPll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 82 NPALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred chhhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 4556789999999999999999999999864
No 243
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=85.56 E-value=1.7 Score=32.84 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=35.2
Q ss_pred hhhhhhhcC-------CccchhHHHHHHHHHH-CCCCEEEEeCCchhhHHHHH
Q psy6288 15 FDMDGLLLG-------YNLAIGALRLINHLHK-HNIPFAIATSSAKESFELKT 59 (166)
Q Consensus 15 ~~~~~~~~~-------~~~~~g~~~~l~~l~~-~g~~i~ivS~~~~~~~~~~l 59 (166)
.|+++.+.. ..+.|.+.+.|+.|++ .|+.++|+|+.+...+...+
T Consensus 19 ~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~ 71 (266)
T PRK10187 19 FDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALA 71 (266)
T ss_pred EecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhc
Confidence 456665553 3567899999999998 79999999999988775444
No 244
>KOG0204|consensus
Probab=85.36 E-value=4.4 Score=35.83 Aligned_cols=99 Identities=13% Similarity=0.123 Sum_probs=60.8
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc--eEEecCCCCCcc------------------
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH--HVVLGSADPEVK------------------ 82 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd--~v~~~~~~~~~~------------------ 82 (166)
..+.+||+.++++.+++.|+.+-.||+..-..+ +.+....|+-..=+ ..+.+. +..
T Consensus 645 kDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TA-kAIA~eCGILt~~~d~~~lEG~---eFr~~s~ee~~~i~pkl~VlA 720 (1034)
T KOG0204|consen 645 KDPVRPGVPEAVQLCQRAGITVRMVTGDNINTA-KAIARECGILTPGGDFLALEGK---EFRELSQEERDKIWPKLRVLA 720 (1034)
T ss_pred cCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHH-HHHHHHcccccCCCccceecch---hhhhcCHHHHHhhhhhheeee
Confidence 357899999999999999999999999986555 44444456543222 122221 111
Q ss_pred CCCC-ChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCe-EEEe
Q psy6288 83 QGKP-APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMS-CVMV 130 (166)
Q Consensus 83 ~~Kp-~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~-~i~v 130 (166)
.+-| +...+-+.+++. .+=+.+-||+-+|..+-+++.+. +.++
T Consensus 721 RSSP~DK~lLVk~L~~~-----g~VVAVTGDGTNDaPALkeADVGlAMGI 765 (1034)
T KOG0204|consen 721 RSSPNDKHLLVKGLIKQ-----GEVVAVTGDGTNDAPALKEADVGLAMGI 765 (1034)
T ss_pred cCCCchHHHHHHHHHhc-----CcEEEEecCCCCCchhhhhcccchhccc
Confidence 1111 122222333333 23466679999999999998775 3344
No 245
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=84.46 E-value=2.2 Score=31.69 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=36.5
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEec
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLG 75 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~ 75 (166)
...-|.+.+++++++++|+.++++|+.+...+...+ +.+++.. .+.+++.
T Consensus 20 ~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~-~~~~~~~-p~~~I~~ 69 (249)
T TIGR01485 20 NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQ-KQKPLLT-PDIWVTS 69 (249)
T ss_pred hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHH-hcCCCCC-CCEEEEc
Confidence 345688999999999999999999999988775554 3346543 3444443
No 246
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=84.12 E-value=16 Score=27.67 Aligned_cols=99 Identities=10% Similarity=0.052 Sum_probs=68.8
Q ss_pred CCccchhHHHHHHH---HHHCCCCEEEEeCCchhhHHHHHhhhcCccccc--ceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288 23 GYNLAIGALRLINH---LHKHNIPFAIATSSAKESFELKTSRHKDTLKLF--HHVVLGSADPEVKQGKPAPDVFLVAAKR 97 (166)
Q Consensus 23 ~~~~~~g~~~~l~~---l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f--d~v~~~~~~~~~~~~Kp~~~~~~~~~~~ 97 (166)
...++|+..+.++. |-+.|+.+..+++.+.. +.+++.+. |-.-.. -.-++ .+.+-.++..++.+.+.
T Consensus 116 ~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v-~a~rLed~-Gc~aVMPlgsPIG------Sg~Gl~n~~~l~~i~e~ 187 (267)
T CHL00162 116 PKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPM-LAKHLEDI-GCATVMPLGSPIG------SGQGLQNLLNLQIIIEN 187 (267)
T ss_pred CcccCCChHHHHHHHHHHHHCCCEEeecCCCCHH-HHHHHHHc-CCeEEeeccCccc------CCCCCCCHHHHHHHHHc
Confidence 35678887777655 55789999999999955 54677664 543211 11122 23455578888888887
Q ss_pred cCCCCCCCceEEEecC---HhHHHHHHHcCCeEEEecCCCC
Q psy6288 98 FDEKPQPSKCLVFEDA---PNGVLGAKAAGMSCVMVPDPTV 135 (166)
Q Consensus 98 ~~~~~~~~~~i~IGD~---~~Di~~a~~~G~~~i~v~~~~~ 135 (166)
.. ++ +++|-+ ..|+..|.+.|+..++++.+..
T Consensus 188 ~~--vp----VivdAGIgt~sDa~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 188 AK--IP----VIIDAGIGTPSEASQAMELGASGVLLNTAVA 222 (267)
T ss_pred CC--Cc----EEEeCCcCCHHHHHHHHHcCCCEEeecceee
Confidence 65 32 566664 4999999999999999988753
No 247
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=82.83 E-value=2.7 Score=36.24 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=38.0
Q ss_pred hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288 15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK 67 (166)
Q Consensus 15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~ 67 (166)
.|+++.+.. ....+...++|++|+++|++++++|+.+...+.... +.+++..
T Consensus 421 sDLDGTLLd~d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~-~~Lgl~~ 474 (694)
T PRK14502 421 TDLDGTLLNPLTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYR-NELGIKD 474 (694)
T ss_pred EECcCCCcCCCCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCCCC
Confidence 456665543 235677899999999999999999999988764444 4456643
No 248
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=82.68 E-value=12 Score=25.16 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=53.9
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHh----hhcCcccccceEEecCCCC---CccCCCCChHHHHHHHHH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTS----RHKDTLKLFHHVVLGSADP---EVKQGKPAPDVFLVAAKR 97 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~----~~~gl~~~fd~v~~~~~~~---~~~~~Kp~~~~~~~~~~~ 97 (166)
.....+.+.+....++|-+++++-++........+. ...++.......+....+. ......-.+.+.++++..
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLLAL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHHHH
Confidence 334556667777777888999998886433322222 2223333333333333000 001112234556777888
Q ss_pred cCCCCCCCceEEE----ecCHhHH---HHHHHcCCeEEEec
Q psy6288 98 FDEKPQPSKCLVF----EDAPNGV---LGAKAAGMSCVMVP 131 (166)
Q Consensus 98 ~~~~~~~~~~i~I----GD~~~Di---~~a~~~G~~~i~v~ 131 (166)
++ ..+..++++ |.+++-+ ..|++.|+.+|.++
T Consensus 99 ~~--~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 99 YD--IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp TT----TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred cC--CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 77 778888876 5556544 55667799999875
No 249
>PLN02423 phosphomannomutase
Probab=80.86 E-value=1.4 Score=32.86 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=28.3
Q ss_pred CCCceEEEec----CHhHHHHHHHcCCeEEEecCC
Q psy6288 103 QPSKCLVFED----APNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 103 ~~~~~i~IGD----~~~Di~~a~~~G~~~i~v~~~ 133 (166)
++++++.+|| +.||++.-+..|+.++.|..+
T Consensus 199 ~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~~ 233 (245)
T PLN02423 199 DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTSP 233 (245)
T ss_pred CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCCH
Confidence 5899999999 699999999999999999765
No 250
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=80.74 E-value=10 Score=31.92 Aligned_cols=88 Identities=8% Similarity=-0.017 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceE
Q psy6288 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCL 108 (166)
Q Consensus 29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i 108 (166)
++...|..+++.+-+++|++-.........+.+.+++.- +.+.... .+-....++++. ...--+
T Consensus 95 Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i--~~~~~~~-----------~~e~~~~v~~lk---~~G~~~ 158 (538)
T PRK15424 95 DVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRI--EQRSYVT-----------EEDARGQINELK---ANGIEA 158 (538)
T ss_pred HHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce--EEEEecC-----------HHHHHHHHHHHH---HCCCCE
Confidence 344455555666778999987654444345555444432 1111111 222344444443 123457
Q ss_pred EEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 109 VFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 109 ~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
+|||+.. ...|.++|+..+++..+
T Consensus 159 vvG~~~~-~~~A~~~g~~g~~~~s~ 182 (538)
T PRK15424 159 VVGAGLI-TDLAEEAGMTGIFIYSA 182 (538)
T ss_pred EEcCchH-HHHHHHhCCceEEecCH
Confidence 7899887 89999999999999754
No 251
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=80.58 E-value=26 Score=27.55 Aligned_cols=99 Identities=7% Similarity=0.033 Sum_probs=67.6
Q ss_pred CCccchhHHHHHHHHHHC---CCCEEEEeCCchhhHHHHHhhhcCccc--ccceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288 23 GYNLAIGALRLINHLHKH---NIPFAIATSSAKESFELKTSRHKDTLK--LFHHVVLGSADPEVKQGKPAPDVFLVAAKR 97 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~---g~~i~ivS~~~~~~~~~~l~~~~gl~~--~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~ 97 (166)
+..++|+..+.++..+.. |+.+.++++.+.... +.+.+ +|-.- ..-..+++. . +-.+|+.++.+.+.
T Consensus 176 ~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a-~~l~~-~g~~avmPl~~pIGsg----~--gv~~p~~i~~~~e~ 247 (326)
T PRK11840 176 AKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAA-KRLED-AGAVAVMPLGAPIGSG----L--GIQNPYTIRLIVEG 247 (326)
T ss_pred CCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHh-cCCEEEeeccccccCC----C--CCCCHHHHHHHHHc
Confidence 356788888888888776 999988888875544 55545 35421 111222322 2 22278888888887
Q ss_pred cCCCCCCCceEEEecC---HhHHHHHHHcCCeEEEecCCCC
Q psy6288 98 FDEKPQPSKCLVFEDA---PNGVLGAKAAGMSCVMVPDPTV 135 (166)
Q Consensus 98 ~~~~~~~~~~i~IGD~---~~Di~~a~~~G~~~i~v~~~~~ 135 (166)
.. + -+++|-+ ..|+..|-+.|+..++++++..
T Consensus 248 ~~--v----pVivdAGIg~~sda~~AmelGadgVL~nSaIa 282 (326)
T PRK11840 248 AT--V----PVLVDAGVGTASDAAVAMELGCDGVLMNTAIA 282 (326)
T ss_pred CC--C----cEEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence 54 2 2677764 4999999999999999998853
No 252
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=80.50 E-value=3.5 Score=30.30 Aligned_cols=46 Identities=15% Similarity=0.137 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS 76 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~ 76 (166)
+...+.++ ++++|++++++|+.+...+...+.. +++.. .+.+++..
T Consensus 18 ~~~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~-l~l~~-~~~~I~~n 63 (236)
T TIGR02471 18 ASFVELLR-GSGDAVGFGIATGRSVESAKSRYAK-LNLPS-PDVLIARV 63 (236)
T ss_pred HHHHHHHH-hcCCCceEEEEeCCCHHHHHHHHHh-CCCCC-CCEEEECC
Confidence 33446676 6888999999999999988666644 56653 44555554
No 253
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=79.72 E-value=12 Score=28.73 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=26.1
Q ss_pred CCccchhHHHHHHHHHHCCC-CEEEEeCCch
Q psy6288 23 GYNLAIGALRLINHLHKHNI-PFAIATSSAK 52 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~-~i~ivS~~~~ 52 (166)
+..+++++.++++.+++.|+ .+.+.||+..
T Consensus 66 EPll~~~l~~iv~~l~~~g~~~v~i~TNG~l 96 (302)
T TIGR02668 66 EPLLRKDLIEIIRRIKDYGIKDVSMTTNGIL 96 (302)
T ss_pred ccccccCHHHHHHHHHhCCCceEEEEcCchH
Confidence 56678999999999999898 8999999863
No 254
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=79.60 E-value=21 Score=28.55 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=24.8
Q ss_pred CCccchhHHHHHHHHHHC-CCC-EEEEeCCch
Q psy6288 23 GYNLAIGALRLINHLHKH-NIP-FAIATSSAK 52 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~-g~~-i~ivS~~~~ 52 (166)
+..+++++.++++.+++. |+. +.+.||+..
T Consensus 116 EPllr~dl~eli~~l~~~~gi~~i~itTNG~l 147 (373)
T PLN02951 116 EPTLRKDIEDICLQLSSLKGLKTLAMTTNGIT 147 (373)
T ss_pred CCcchhhHHHHHHHHHhcCCCceEEEeeCcch
Confidence 567789999999999985 885 888899863
No 255
>KOG0323|consensus
Probab=79.48 E-value=7.3 Score=33.36 Aligned_cols=87 Identities=14% Similarity=0.073 Sum_probs=52.5
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc-ccc-ceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL-KLF-HHVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~-~~f-d~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
..+++|++.+||+++.+. |.+.|.|.+.+.-+ ..+.+.+.-. .|| |.|++-+ +....| ..-+..+.
T Consensus 199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA-~~i~~liDP~~~lF~dRIisrd---e~~~~k------t~dL~~~~- 266 (635)
T KOG0323|consen 199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYA-LEIAKLIDPEGKYFGDRIISRD---ESPFFK------TLDLVLLF- 266 (635)
T ss_pred EEEeCccHHHHHHHHHhh-ceeEEEeccchHHH-HHHHHHhCCCCccccceEEEec---CCCccc------ccccccCC-
Confidence 367899999999999986 99999999997755 3443433322 456 4566666 422222 11122222
Q ss_pred CCCCCceEEEecCHhHHHHHH
Q psy6288 101 KPQPSKCLVFEDAPNGVLGAK 121 (166)
Q Consensus 101 ~~~~~~~i~IGD~~~Di~~a~ 121 (166)
+..+..+++|.|+..-..-..
T Consensus 267 p~g~smvvIIDDr~dVW~~~~ 287 (635)
T KOG0323|consen 267 PCGDSMVVIIDDRSDVWPDHK 287 (635)
T ss_pred CCCCccEEEEeCccccccCCC
Confidence 134555788888764333333
No 256
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=79.46 E-value=11 Score=30.62 Aligned_cols=51 Identities=16% Similarity=0.048 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHHHhhhh---hhhc-----CCccchhHHHHHHHHHHCCCCEEEE-eCCc
Q psy6288 1 MNISQVLNYVTHVIFDMD---GLLL-----GYNLAIGALRLINHLHKHNIPFAIA-TSSA 51 (166)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~g~~~~l~~l~~~g~~i~iv-S~~~ 51 (166)
|+.++++..+.....-+. +.+. ....+|.+.++|+.+++.|+++++. ||+.
T Consensus 54 ~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~ 113 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGK 113 (404)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCc
Confidence 456667766666544331 1111 4567899999999999999999995 9864
No 257
>PRK00208 thiG thiazole synthase; Reviewed
Probab=79.16 E-value=25 Score=26.53 Aligned_cols=99 Identities=8% Similarity=0.057 Sum_probs=65.1
Q ss_pred CCccchhHHHHHHHHHHC---CCCEEEEeCCchhhHHHHHhhhcCcccccc--eEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288 23 GYNLAIGALRLINHLHKH---NIPFAIATSSAKESFELKTSRHKDTLKLFH--HVVLGSADPEVKQGKPAPDVFLVAAKR 97 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~---g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd--~v~~~~~~~~~~~~Kp~~~~~~~~~~~ 97 (166)
...++|+..+.++..++. |+.+.-+.+.+.... +.+.+ +|-.-..- .-+++. .+-.+++.++.+.+.
T Consensus 102 ~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~a-k~l~~-~G~~~vmPlg~pIGsg------~gi~~~~~i~~i~e~ 173 (250)
T PRK00208 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLA-KRLEE-AGCAAVMPLGAPIGSG------LGLLNPYNLRIIIEQ 173 (250)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHH-HHHHH-cCCCEeCCCCcCCCCC------CCCCCHHHHHHHHHh
Confidence 345788898988888776 999996666664544 55555 35432211 222222 122247777777776
Q ss_pred cCCCCCCCceEEEec---CHhHHHHHHHcCCeEEEecCCCC
Q psy6288 98 FDEKPQPSKCLVFED---APNGVLGAKAAGMSCVMVPDPTV 135 (166)
Q Consensus 98 ~~~~~~~~~~i~IGD---~~~Di~~a~~~G~~~i~v~~~~~ 135 (166)
.+ + .+++|- ++.|+..|.+.|+..++++++..
T Consensus 174 ~~--v----pVIveaGI~tpeda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 174 AD--V----PVIVDAGIGTPSDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred cC--C----eEEEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence 44 3 256665 45999999999999999998864
No 258
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=78.89 E-value=2.2 Score=23.02 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhh
Q psy6288 31 LRLINHLHKHNIPFAIATSSAKESFELKTSRH 62 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~ 62 (166)
.++.+.|++.|++.+-+|...+....+++.+.
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~~~ 40 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLRKL 40 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHHHH
Confidence 36788999999999999999999888887654
No 259
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=78.83 E-value=15 Score=28.73 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=24.9
Q ss_pred CCccchhHHHHHHHHHHCCC--CEEEEeCCch
Q psy6288 23 GYNLAIGALRLINHLHKHNI--PFAIATSSAK 52 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~--~i~ivS~~~~ 52 (166)
+..+++++.++++.+++.+. .+.+.||+..
T Consensus 71 EPllr~dl~~li~~i~~~~~l~~i~itTNG~l 102 (329)
T PRK13361 71 EPLVRRGCDQLVARLGKLPGLEELSLTTNGSR 102 (329)
T ss_pred CCCccccHHHHHHHHHhCCCCceEEEEeChhH
Confidence 56778999999999998754 6889999863
No 260
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=78.71 E-value=5.6 Score=31.32 Aligned_cols=29 Identities=14% Similarity=0.090 Sum_probs=26.5
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCc
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSA 51 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~ 51 (166)
+..++|++.++++.+++.|+.+.+.||+.
T Consensus 63 EPll~~~~~~ii~~~~~~g~~~~l~TNG~ 91 (358)
T TIGR02109 63 EPLARPDLVELVAHARRLGLYTNLITSGV 91 (358)
T ss_pred cccccccHHHHHHHHHHcCCeEEEEeCCc
Confidence 56778999999999999999999999996
No 261
>PLN02887 hydrolase family protein
Probab=78.57 E-value=4.7 Score=34.25 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=40.1
Q ss_pred HHhhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 13 VIFDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 13 ~~~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
+..|+++.+-. ..+-+...++|++|+++|+.+++.|+.....+...+ +.+++.
T Consensus 311 Ia~DLDGTLLn~d~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l-~~L~l~ 365 (580)
T PLN02887 311 IFCDMDGTLLNSKSQISETNAKALKEALSRGVKVVIATGKARPAVIDIL-KMVDLA 365 (580)
T ss_pred EEEeCCCCCCCCCCccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHhCcc
Confidence 34466775543 457899999999999999999999999988775544 435654
No 262
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=78.02 E-value=12 Score=28.17 Aligned_cols=84 Identities=19% Similarity=0.268 Sum_probs=51.3
Q ss_pred HCCCCEEEEeCCchhh---HHHHHhhhc-CcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH
Q psy6288 39 KHNIPFAIATSSAKES---FELKTSRHK-DTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP 114 (166)
Q Consensus 39 ~~g~~i~ivS~~~~~~---~~~~l~~~~-gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~ 114 (166)
+.++.+.++|++..-. ++....+.+ .+..-| .|+.+. +...|.|...+.+++.-+ + .|++|||.+
T Consensus 28 RedI~vrv~gsGaKm~pe~~e~~~~~~~~~~~pdf-~I~isP-----N~~~PGP~~ARE~l~~~~--i---P~IvI~D~p 96 (276)
T PF01993_consen 28 REDIDVRVVGSGAKMGPEDVEEVVTKMLKEWDPDF-VIVISP-----NAAAPGPTKAREMLSAKG--I---PCIVISDAP 96 (276)
T ss_dssp -SSEEEEEEEEET--SHHHHHHHHHHHHHHH--SE-EEEE-S------TTSHHHHHHHHHHHHSS--S----EEEEEEGG
T ss_pred cCCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCE-EEEECC-----CCCCCCcHHHHHHHHhCC--C---CEEEEcCCC
Confidence 3478888888875322 222222211 233333 344444 346778888898888887 3 489999987
Q ss_pred --hHHHHHHHcCCeEEEecCC
Q psy6288 115 --NGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 115 --~Di~~a~~~G~~~i~v~~~ 133 (166)
..-..-.+.|+..|.+...
T Consensus 97 ~~k~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 97 TKKAKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp GGGGHHHHHHTT-EEEEETTS
T ss_pred chhhHHHHHhcCCcEEEEecC
Confidence 5677888899999988754
No 263
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.70 E-value=27 Score=26.06 Aligned_cols=99 Identities=15% Similarity=-0.016 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCce
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKC 107 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 107 (166)
+...++++.+++.|.+.+++-+...+. ..+.......+.|- +++.. .....+-.+.....+.+--. ..++..
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~--e~l~~~~~~~~~~l-~msv~---~~~g~~~~~~~~~~i~~lr~--~~~~~~ 187 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPD--LLIHRLSKLSPLFI-YYGLR---PATGVPLPVSVERNIKRVRN--LVGNKY 187 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCH--HHHHHHHHhCCCEE-EEEeC---CCCCCCchHHHHHHHHHHHH--hcCCCC
Confidence 677889999999999988777664321 12222122223231 22322 11111212222222222222 223345
Q ss_pred EEEecCH---hHHHHHHHcCCeEEEecCCC
Q psy6288 108 LVFEDAP---NGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 108 i~IGD~~---~Di~~a~~~G~~~i~v~~~~ 134 (166)
+.+|=+. .++..+.++|+..+.++...
T Consensus 188 i~v~gGI~~~e~i~~~~~~gaD~vvvGSai 217 (244)
T PRK13125 188 LVVGFGLDSPEDARDALSAGADGVVVGTAF 217 (244)
T ss_pred EEEeCCcCCHHHHHHHHHcCCCEEEECHHH
Confidence 7888876 67777788999999887653
No 264
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=76.57 E-value=7.4 Score=30.94 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=26.5
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCc
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSA 51 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~ 51 (166)
+..++|++.++++.+++.|+.+.+.||+.
T Consensus 72 EPll~~~~~~il~~~~~~g~~~~i~TNG~ 100 (378)
T PRK05301 72 EPLLRKDLEELVAHARELGLYTNLITSGV 100 (378)
T ss_pred ccCCchhHHHHHHHHHHcCCcEEEECCCc
Confidence 66778999999999999999999999996
No 265
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=75.63 E-value=4.7 Score=29.55 Aligned_cols=53 Identities=19% Similarity=0.255 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHhhhhh-hhc--CCccchhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 1 MNISQVLNYVTHVIFDMDG-LLL--GYNLAIGALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
|..+++++.+......... .+. +....++..++++.|++.|+++.+=||++..
T Consensus 56 ~~~~~I~~~i~~~~~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 56 MSADEILADIKSLGYKARGVSLTGGEPLLQPNLLELLELLKRLGFRIALETNGTIP 111 (212)
T ss_pred cCHHHHHHHHHhcCCCcceEEEeCCcCCCcccHHHHHHHHHhCCceEEecCCCCcc
Confidence 4456666666654222221 112 3333669999999999999999999998755
No 266
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=75.07 E-value=9 Score=28.09 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=25.9
Q ss_pred CCccchh-HHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 23 GYNLAIG-ALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 23 ~~~~~~g-~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
+..++++ +.++++.+++.|+.+++.||+...
T Consensus 48 EPllq~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 48 EVLMQAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred hHHcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4556677 589999999999999999999654
No 267
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=74.37 E-value=20 Score=28.00 Aligned_cols=97 Identities=18% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHHHHHC-CCC-EEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHH---HHHHHHHcCCCCCC
Q psy6288 30 ALRLINHLHKH-NIP-FAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDV---FLVAAKRFDEKPQP 104 (166)
Q Consensus 30 ~~~~l~~l~~~-g~~-i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~---~~~~~~~~~~~~~~ 104 (166)
+..+++.|++. ++. ..++|+...... ..+.+-+++..-++..+++. .....+-.... +..++++.+ |
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~-~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~----p 87 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREML-DQVLDLFHLPPDYDLNIMSP---GQTLGEITSNMLEGLEELLLEEK----P 87 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHH-HHHHHhcCCCCCeeeecCCC---CCCHHHHHHHHHHHHHHHHHHcC----C
Confidence 44578888775 443 567777776544 44444467653222222221 11111211222 333444444 7
Q ss_pred CceEEEecCHh---HHHHHHHcCCeEEEecCCC
Q psy6288 105 SKCLVFEDAPN---GVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 105 ~~~i~IGD~~~---Di~~a~~~G~~~i~v~~~~ 134 (166)
+=++..||... -..+|+..|++.+.+..|.
T Consensus 88 Div~~~gd~~~~la~a~aa~~~~ipv~h~~~g~ 120 (365)
T TIGR00236 88 DIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGL 120 (365)
T ss_pred CEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCC
Confidence 77888899653 4567778899998876543
No 268
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=74.20 E-value=35 Score=25.65 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=60.2
Q ss_pred CCccchhHHHHHHH---HHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288 23 GYNLAIGALRLINH---LHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD 99 (166)
Q Consensus 23 ~~~~~~g~~~~l~~---l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 99 (166)
...++|+..+.++. |.+.|+.+.-+++.+.. ..+++.+. |-.- +..-.+.=..+.+--.+..++.+.++.+
T Consensus 102 ~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v-~akrL~d~-Gcaa----vMPlgsPIGSg~Gi~n~~~l~~i~~~~~ 175 (247)
T PF05690_consen 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPV-LAKRLEDA-GCAA----VMPLGSPIGSGRGIQNPYNLRIIIERAD 175 (247)
T ss_dssp TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HH-HHHHHHHT-T-SE----BEEBSSSTTT---SSTHHHHHHHHHHGS
T ss_pred CCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHH-HHHHHHHC-CCCE----EEecccccccCcCCCCHHHHHHHHHhcC
Confidence 34577888877654 55789999999999955 55777774 6432 2221100022344556899999999998
Q ss_pred CCCCCCceEEEec---CHhHHHHHHHcCCeEEEecCC
Q psy6288 100 EKPQPSKCLVFED---APNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 100 ~~~~~~~~i~IGD---~~~Di~~a~~~G~~~i~v~~~ 133 (166)
++ ++|+- +++|..-|.+.|+..+++.+.
T Consensus 176 --vP----vIvDAGiG~pSdaa~AMElG~daVLvNTA 206 (247)
T PF05690_consen 176 --VP----VIVDAGIGTPSDAAQAMELGADAVLVNTA 206 (247)
T ss_dssp --SS----BEEES---SHHHHHHHHHTT-SEEEESHH
T ss_pred --Cc----EEEeCCCCCHHHHHHHHHcCCceeehhhH
Confidence 43 34444 459999999999999999765
No 269
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=73.99 E-value=4.9 Score=31.71 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=46.8
Q ss_pred HHHHC-CCCE-EEEeCCc-hhhHHHHHhhhcCcccccceEEecCCCCCccCCCCC---hHHHHHHHHHcCCCCCCCceEE
Q psy6288 36 HLHKH-NIPF-AIATSSA-KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA---PDVFLVAAKRFDEKPQPSKCLV 109 (166)
Q Consensus 36 ~l~~~-g~~i-~ivS~~~-~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~---~~~~~~~~~~~~~~~~~~~~i~ 109 (166)
+|++. ++.+ .|+|+.. .......+.+-+++ ...+..+..+ .....+-- ...+..+++++. |+=+++
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i-~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~----Pd~Vlv 73 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGI-PKPDYLLDSD---SQSMAKSTGLAIIELADVLEREK----PDAVLV 73 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT---SEEEE--ST---TS-HHHHHHHHHHHHHHHHHHHT-----SEEEE
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCC-CCCCcccccc---cchHHHHHHHHHHHHHHHHHhcC----CCEEEE
Confidence 45554 5654 4555554 13344455555667 5566666655 32121111 122444555555 999999
Q ss_pred EecCHhH---HHHHHHcCCeEEEecCCCCC
Q psy6288 110 FEDAPNG---VLGAKAAGMSCVMVPDPTVP 136 (166)
Q Consensus 110 IGD~~~D---i~~a~~~G~~~i~v~~~~~~ 136 (166)
.||+..= ..+|...+++.+.+..|-++
T Consensus 74 ~GD~~~~la~alaA~~~~ipv~HieaGlRs 103 (346)
T PF02350_consen 74 LGDRNEALAAALAAFYLNIPVAHIEAGLRS 103 (346)
T ss_dssp ETTSHHHHHHHHHHHHTT-EEEEES-----
T ss_pred EcCCchHHHHHHHHHHhCCCEEEecCCCCc
Confidence 9998854 45666679999999988433
No 270
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=73.89 E-value=6.6 Score=28.95 Aligned_cols=94 Identities=12% Similarity=0.008 Sum_probs=60.0
Q ss_pred CCccchhHH-HHHHHHHHCCCCEEEEeCCchh-----hHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHH
Q psy6288 23 GYNLAIGAL-RLINHLHKHNIPFAIATSSAKE-----SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAK 96 (166)
Q Consensus 23 ~~~~~~g~~-~~l~~l~~~g~~i~ivS~~~~~-----~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~ 96 (166)
...++|++. ++.+.+++.|.+..|+...... .++..+.+ +|+.-.|...+|+- .+.....+...++
T Consensus 57 ~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~-~gi~~~~P~~~CsL-------~~~~~p~i~~F~~ 128 (217)
T PF02593_consen 57 AYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEE-FGIEVEFPKPFCSL-------EENGNPQIDEFAE 128 (217)
T ss_pred EeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHh-cCceeecCcccccc-------CCCCChhHHHHHH
Confidence 357788887 6667778899999999887666 56566554 57777777766654 2233455666777
Q ss_pred HcCCCCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288 97 RFDEKPQPSKCLVFEDAPNGVLGAKAAGMS 126 (166)
Q Consensus 97 ~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~ 126 (166)
.+| .+.=++.+=+|...|+.--|.+-|.
T Consensus 129 ~fG--kP~~ei~v~~~~I~~V~VlR~aPCG 156 (217)
T PF02593_consen 129 YFG--KPKVEIEVENGKIKDVKVLRSAPCG 156 (217)
T ss_pred HhC--CceEEEEecCCcEEEEEEEecCCCc
Confidence 799 4444443333344666555555443
No 271
>PTZ00174 phosphomannomutase; Provisional
Probab=73.02 E-value=3.1 Score=30.99 Aligned_cols=39 Identities=10% Similarity=-0.090 Sum_probs=31.6
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEec----CHhHHHHHHHcCCeEEEecC
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFED----APNGVLGAKAAGMSCVMVPD 132 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD----~~~Di~~a~~~G~~~i~v~~ 132 (166)
...++.+++. +++++.||| +.||+..-+.+|...+.|..
T Consensus 190 g~al~~L~~~------~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n 232 (247)
T PTZ00174 190 TYCLRHLEND------FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKN 232 (247)
T ss_pred HHHHHHHHhh------hhhEEEEcccCCCCCCcHhhhhcCCCceEEeCC
Confidence 4555555555 589999999 89999999999998888873
No 272
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=72.27 E-value=57 Score=27.30 Aligned_cols=93 Identities=14% Similarity=0.004 Sum_probs=51.5
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc--------ceEEecCCCC-CccCCCCChHHHHHHHH
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF--------HHVVLGSADP-EVKQGKPAPDVFLVAAK 96 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f--------d~v~~~~~~~-~~~~~Kp~~~~~~~~~~ 96 (166)
++|.+.+ .++++|.+ +|+|.+....++.-..+.+|++... +..+++.-.+ +...+ .+-...+.+
T Consensus 111 l~~~a~~---~~~~~g~~-vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~G---e~Kv~rl~~ 183 (497)
T PLN02177 111 VHPETWR---VFNSFGKR-YIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVG---DHKRDAVLK 183 (497)
T ss_pred cCHHHHH---HHHhCCCE-EEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCcc---HHHHHHHHH
Confidence 4555444 44567754 9999998776654443445764321 2223332000 00000 122333445
Q ss_pred HcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288 97 RFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 97 ~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
.++ .+... +..||+.+|...-..++-+.+
T Consensus 184 ~~g--~~~~~-~aYgDS~sD~plL~~a~e~y~ 212 (497)
T PLN02177 184 EFG--DALPD-LGLGDRETDHDFMSICKEGYM 212 (497)
T ss_pred HhC--CCCce-EEEECCccHHHHHHhCCccEE
Confidence 666 44334 899999999999998886543
No 273
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=72.22 E-value=5.2 Score=31.16 Aligned_cols=31 Identities=10% Similarity=-0.105 Sum_probs=27.7
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
+..++|++.++++.+++.|..+.+.||+..-
T Consensus 82 EPLL~pdl~eiv~~~~~~g~~v~l~TNG~ll 112 (318)
T TIGR03470 82 EPLLHPEIDEIVRGLVARKKFVYLCTNALLL 112 (318)
T ss_pred cccccccHHHHHHHHHHcCCeEEEecCceeh
Confidence 6778999999999999999999999999743
No 274
>PLN02591 tryptophan synthase
Probab=70.59 E-value=43 Score=25.24 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=56.5
Q ss_pred CccchhHHHHHHHHHHCCCCE-EEEeCCchh-hHHHHHhhhcCcccccceEEecCCCCCc-cCCCCChHHHHHHHHHcCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPF-AIATSSAKE-SFELKTSRHKDTLKLFHHVVLGSADPEV-KQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i-~ivS~~~~~-~~~~~l~~~~gl~~~fd~v~~~~~~~~~-~~~Kp~~~~~~~~~~~~~~ 100 (166)
..+++...++.+.++++|+.. .++|.++.+ ++ ..+.+ ...-|=+.++.. .+ +.....+..+...+++..
T Consensus 114 DLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri-~~ia~---~~~gFIY~Vs~~---GvTG~~~~~~~~~~~~i~~vk- 185 (250)
T PLN02591 114 DLPLEETEALRAEAAKNGIELVLLTTPTTPTERM-KAIAE---ASEGFVYLVSST---GVTGARASVSGRVESLLQELK- 185 (250)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHH-HHHHH---hCCCcEEEeeCC---CCcCCCcCCchhHHHHHHHHH-
Confidence 345577778888888888864 445455533 23 22222 222222444432 22 221122344455444444
Q ss_pred CCCCCceEEEecCHh---HHHHHHHcCCeEEEecCCC
Q psy6288 101 KPQPSKCLVFEDAPN---GVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 101 ~~~~~~~i~IGD~~~---Di~~a~~~G~~~i~v~~~~ 134 (166)
--.+--+++|=+.+ |+..+.+.|...+.|....
T Consensus 186 -~~~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSal 221 (250)
T PLN02591 186 -EVTDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAM 221 (250)
T ss_pred -hcCCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHH
Confidence 22455566777664 8888888899999987653
No 275
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=68.37 E-value=10 Score=24.66 Aligned_cols=30 Identities=7% Similarity=0.032 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
--+.+.++++.+++.|.+++.+|++....+
T Consensus 58 ~t~e~~~~~~~a~~~g~~vi~iT~~~~s~l 87 (126)
T cd05008 58 ETADTLAALRLAKEKGAKTVAITNVVGSTL 87 (126)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence 346788899999999999999999875543
No 276
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=68.08 E-value=8.8 Score=25.08 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=25.7
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
.--+.+.++++.++++|.+++.+|++....+
T Consensus 58 G~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 58 GETDELLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 3457788999999999999999999875543
No 277
>TIGR00221 nagA N-acetylglucosamine-6-phosphate deacetylase.
Probab=67.70 E-value=60 Score=26.06 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=26.2
Q ss_pred CccchhHHHHHHHHHHCCCCEEEE-eCCchhhHHHHH
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIA-TSSAKESFELKT 59 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~iv-S~~~~~~~~~~l 59 (166)
.+-.||..+++++|+++|+.+.+- |+.+.+.+...+
T Consensus 173 APE~~~~~~~i~~l~~~gi~vs~GHs~A~~~~~~~a~ 209 (380)
T TIGR00221 173 APEEDQHFELIRHLKDAGIIVSAGHTNATYELAKAAF 209 (380)
T ss_pred CCCCCChHHHHHHHHHCCeEEEeeCCCCCHHHHHHHH
Confidence 444789999999999999988764 455555554443
No 278
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=67.21 E-value=43 Score=23.89 Aligned_cols=91 Identities=16% Similarity=0.109 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHHC--CCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288 27 AIGALRLINHLHKH--NIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP 104 (166)
Q Consensus 27 ~~g~~~~l~~l~~~--g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 104 (166)
..-+..+++.|+++ +.++.+-|...... ....+.+ .+.....+ .. -..+......++... |
T Consensus 34 ~~a~~~Li~~l~~~~p~~~illT~~T~tg~--~~~~~~~--~~~v~~~~-~P--------~D~~~~~~rfl~~~~----P 96 (186)
T PF04413_consen 34 VNAARPLIKRLRKQRPDLRILLTTTTPTGR--EMARKLL--PDRVDVQY-LP--------LDFPWAVRRFLDHWR----P 96 (186)
T ss_dssp HHHHHHHHHHHTT---TS-EEEEES-CCHH--HHHHGG---GGG-SEEE------------SSHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEecCCchH--HHHHHhC--CCCeEEEE-eC--------ccCHHHHHHHHHHhC----C
Confidence 34466788889876 78887777755332 2222221 11111221 11 223778899999988 8
Q ss_pred CceEEEecCH--hHHHHHHHcCCeEEEecCCC
Q psy6288 105 SKCLVFEDAP--NGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 105 ~~~i~IGD~~--~Di~~a~~~G~~~i~v~~~~ 134 (166)
+-+++++... +=+..|++.|++.++|+.-.
T Consensus 97 ~~~i~~EtElWPnll~~a~~~~ip~~LvNarl 128 (186)
T PF04413_consen 97 DLLIWVETELWPNLLREAKRRGIPVVLVNARL 128 (186)
T ss_dssp SEEEEES----HHHHHH-----S-EEEEEE--
T ss_pred CEEEEEccccCHHHHHHHhhcCCCEEEEeeee
Confidence 9999999976 67888899999999997643
No 279
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=67.07 E-value=48 Score=24.41 Aligned_cols=106 Identities=8% Similarity=0.018 Sum_probs=59.0
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC--
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE-- 100 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~-- 100 (166)
+....+...++|+.+++.|.+.+++-|-..+. ..+...+ ...|.+.--..++..+..+--+..++++.+--..
T Consensus 88 H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~--~~i~~~l---~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~ 162 (220)
T PRK08883 88 HVEASEHVDRTLQLIKEHGCQAGVVLNPATPL--HHLEYIM---DKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMID 162 (220)
T ss_pred cccCcccHHHHHHHHHHcCCcEEEEeCCCCCH--HHHHHHH---HhCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHH
Confidence 34445678899999999999999988876432 2332222 2344432222122233333344555444432220
Q ss_pred CCCCC-ceEEEec-CHhHHHHHHHcCCeEEEecCC
Q psy6288 101 KPQPS-KCLVFED-APNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 101 ~~~~~-~~i~IGD-~~~Di~~a~~~G~~~i~v~~~ 133 (166)
....+ .+.+.|- +..++....++|...+.+...
T Consensus 163 ~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSa 197 (220)
T PRK08883 163 ESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSA 197 (220)
T ss_pred hcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHH
Confidence 00111 2334444 457888999999998888755
No 280
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=66.56 E-value=42 Score=23.53 Aligned_cols=85 Identities=7% Similarity=-0.092 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccce-EEecCCCCCccCCCCChHHHHHHHHHcCCCCCCC
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHH-VVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPS 105 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~-v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 105 (166)
.+=+.++++.+.+.|.+++++.+.... + ..+.+.+ -..|-.. +++.. +... ++.-.+.+++..+ ....
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~-~-~~~~~~l-~~~yP~l~ivg~~---~g~f---~~~~~~~i~~~I~--~~~p 102 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEV-L-EKAAANL-RRRYPGLRIVGYH---HGYF---DEEEEEAIINRIN--ASGP 102 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHH-H-HHHHHHH-HHHCCCeEEEEec---CCCC---ChhhHHHHHHHHH--HcCC
Confidence 444567788888899999999998733 2 2333322 1122233 33333 2222 4666777777777 6677
Q ss_pred ceEEEecCH--hHHHHHHH
Q psy6288 106 KCLVFEDAP--NGVLGAKA 122 (166)
Q Consensus 106 ~~i~IGD~~--~Di~~a~~ 122 (166)
.+++||=+. ...-.++.
T Consensus 103 div~vglG~PkQE~~~~~~ 121 (172)
T PF03808_consen 103 DIVFVGLGAPKQERWIARH 121 (172)
T ss_pred CEEEEECCCCHHHHHHHHH
Confidence 899999865 45544444
No 281
>PLN02580 trehalose-phosphatase
Probab=66.32 E-value=12 Score=30.09 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=33.4
Q ss_pred hhhhhhhc-------CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHH
Q psy6288 15 FDMDGLLL-------GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKT 59 (166)
Q Consensus 15 ~~~~~~~~-------~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l 59 (166)
.|+++.+. ...+-|++.+.|+.|.+. .+++|+|+.+...+...+
T Consensus 124 LDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~~~~L~~~l 174 (384)
T PLN02580 124 LDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKY-FPTAIISGRSRDKVYELV 174 (384)
T ss_pred EecCCccCCCCCCcccccCCHHHHHHHHHHhhC-CCEEEEeCCCHHHHHHHh
Confidence 35666554 345678999999999987 689999999988765443
No 282
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=65.87 E-value=9.6 Score=28.37 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
..-+...+.+|++.|++++.+|+.+...+. .+.+.+|+.
T Consensus 25 ~~pA~pv~~el~d~G~~Vi~~SSKT~aE~~-~l~~~l~v~ 63 (274)
T COG3769 25 WQPAAPVLLELKDAGVPVILCSSKTRAEML-YLQKSLGVQ 63 (274)
T ss_pred CCccchHHHHHHHcCCeEEEeccchHHHHH-HHHHhcCCC
Confidence 345778999999999999999999977764 334445654
No 283
>PLN02423 phosphomannomutase
Probab=64.92 E-value=13 Score=27.68 Aligned_cols=45 Identities=20% Similarity=0.312 Sum_probs=33.3
Q ss_pred hhhhhhhcC--CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHh
Q psy6288 15 FDMDGLLLG--YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTS 60 (166)
Q Consensus 15 ~~~~~~~~~--~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~ 60 (166)
.|+++.+-. ..+.|...++|++|++. ++++++|+.....+...+.
T Consensus 12 ~D~DGTLl~~~~~i~~~~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~ 58 (245)
T PLN02423 12 FDVDGTLTAPRKEATPEMLEFMKELRKV-VTVGVVGGSDLSKISEQLG 58 (245)
T ss_pred EeccCCCcCCCCcCCHHHHHHHHHHHhC-CEEEEECCcCHHHHHHHhc
Confidence 456664442 45678899999999986 9999999997665544443
No 284
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=64.67 E-value=13 Score=27.42 Aligned_cols=45 Identities=11% Similarity=-0.045 Sum_probs=28.1
Q ss_pred ChHHHHHHHHHcCCCCC---CCceEEEecCHhHHHHHHHcCC-----eEEEecCC
Q psy6288 87 APDVFLVAAKRFDEKPQ---PSKCLVFEDAPNGVLGAKAAGM-----SCVMVPDP 133 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~---~~~~i~IGD~~~Di~~a~~~G~-----~~i~v~~~ 133 (166)
+-...+.++++++ .. ++-++++||..+|-.+.+.+.- -++.|...
T Consensus 166 KG~av~~ll~~~~--~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~ 218 (235)
T PF02358_consen 166 KGSAVRRLLEELP--FAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSV 218 (235)
T ss_dssp HHHHHHHHHTTS-----------EEEEESSHHHHHHHHTTTTS----EEEEES--
T ss_pred hHHHHHHHHHhcC--ccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEee
Confidence 3566777888877 54 7899999999999888887644 35666554
No 285
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=64.60 E-value=19 Score=25.11 Aligned_cols=48 Identities=15% Similarity=-0.006 Sum_probs=29.2
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc-ccccceEEecC
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT-LKLFHHVVLGS 76 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl-~~~fd~v~~~~ 76 (166)
....+.++|+.++..|.++++...+.... .++..+|+ .+.+++++..+
T Consensus 53 ~~~~l~~~L~~~~~~gk~I~~yGA~~kg~---tlln~~g~~~~~I~~vvD~n 101 (160)
T PF08484_consen 53 SKAELREFLEKLKAEGKRIAGYGAGAKGN---TLLNYFGLDNDLIDYVVDDN 101 (160)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE---SHHH---HHHHHHT--TTTS--EEES-
T ss_pred HHHHHHHHHHHHHHcCCEEEEECcchHHH---HHHHHhCCCcceeEEEEeCC
Confidence 34567788999999999999999998663 45566788 45678887765
No 286
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=64.30 E-value=17 Score=26.85 Aligned_cols=30 Identities=13% Similarity=-0.020 Sum_probs=25.2
Q ss_pred CCccchhH-HHHHHHHHHCCCCEEEEeCCch
Q psy6288 23 GYNLAIGA-LRLINHLHKHNIPFAIATSSAK 52 (166)
Q Consensus 23 ~~~~~~g~-~~~l~~l~~~g~~i~ivS~~~~ 52 (166)
+..++++. .++++.+++.|+++++.||+..
T Consensus 80 EPll~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 80 EAILQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred cHhcCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 45567775 5999999999999999999974
No 287
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=62.67 E-value=15 Score=23.99 Aligned_cols=30 Identities=3% Similarity=-0.038 Sum_probs=24.7
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
--+.+.+.++.+++.|.+++.+|+.....+
T Consensus 59 ~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (120)
T cd05710 59 NTKETVAAAKFAKEKGATVIGLTDDEDSPL 88 (120)
T ss_pred CChHHHHHHHHHHHcCCeEEEEECCCCCcH
Confidence 457788899999999999999999876543
No 288
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=62.24 E-value=63 Score=24.06 Aligned_cols=99 Identities=7% Similarity=-0.078 Sum_probs=50.6
Q ss_pred cchhHHHHHHHHHHCCCCEEE-EeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCC-ChHHHHHHHHHcCCCCC
Q psy6288 26 LAIGALRLINHLHKHNIPFAI-ATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKP-APDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~i-vS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp-~~~~~~~~~~~~~~~~~ 103 (166)
+.+...++++.++++|.+.++ ++..+.......+.+. ..-|-.+++.. +-.+..+. .+...+.+.+--. .
T Consensus 114 ~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~---~~~~vy~~s~~--g~tG~~~~~~~~~~~~i~~lr~--~- 185 (242)
T cd04724 114 PPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAEL---ASGFIYYVSRT--GVTGARTELPDDLKELIKRIRK--Y- 185 (242)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhh---CCCCEEEEeCC--CCCCCccCCChhHHHHHHHHHh--c-
Confidence 456777899999999997666 5554433222233331 11122444433 01222221 1233333222222 2
Q ss_pred CCceEEEecCHh---HHHHHHHcCCeEEEecCC
Q psy6288 104 PSKCLVFEDAPN---GVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 104 ~~~~i~IGD~~~---Di~~a~~~G~~~i~v~~~ 133 (166)
.+.-+.+|=+.+ ++....++ ...+.|...
T Consensus 186 ~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSa 217 (242)
T cd04724 186 TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSA 217 (242)
T ss_pred CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHH
Confidence 355677788775 56666666 667777544
No 289
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=62.11 E-value=21 Score=25.46 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=31.9
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhh--c--CcccccceEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRH--K--DTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF 98 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~--~--gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~ 98 (166)
+..+.| .+|..+++.|++++++.+...+......... + .+-..||.+...+ +.-..-+.++
T Consensus 103 EtElWP---nll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs------------~~da~r~~~l 167 (186)
T PF04413_consen 103 ETELWP---NLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQS------------EADAERFRKL 167 (186)
T ss_dssp S----H---HHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESS------------HHHHHHHHTT
T ss_pred ccccCH---HHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECC------------HHHHHHHHHc
Confidence 344444 4788889999999999977543221111110 0 1235578887766 2235567788
Q ss_pred CCCCCCCceEEEecCHhHH
Q psy6288 99 DEKPQPSKCLVFEDAPNGV 117 (166)
Q Consensus 99 ~~~~~~~~~i~IGD~~~Di 117 (166)
| .+++++.+.|+---|.
T Consensus 168 G--~~~~~v~v~GnlKfd~ 184 (186)
T PF04413_consen 168 G--APPERVHVTGNLKFDQ 184 (186)
T ss_dssp T---S--SEEE---GGG--
T ss_pred C--CCcceEEEeCcchhcc
Confidence 8 8999999999977664
No 290
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=62.10 E-value=66 Score=24.22 Aligned_cols=98 Identities=11% Similarity=0.125 Sum_probs=67.5
Q ss_pred CCccchhHHHHHHH---HHHCCCCEEEEeCCchhhHHHHHhhhcCccccc--ceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288 23 GYNLAIGALRLINH---LHKHNIPFAIATSSAKESFELKTSRHKDTLKLF--HHVVLGSADPEVKQGKPAPDVFLVAAKR 97 (166)
Q Consensus 23 ~~~~~~g~~~~l~~---l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f--d~v~~~~~~~~~~~~Kp~~~~~~~~~~~ 97 (166)
.-.+.|+..+.++. |-+.|+.+...++.+.- +.+++++. |-.... -.-+++ +.+--.+..++.++++
T Consensus 109 ~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v-~arrLee~-GcaavMPl~aPIGS------g~G~~n~~~l~iiie~ 180 (262)
T COG2022 109 EKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPV-LARRLEEA-GCAAVMPLGAPIGS------GLGLQNPYNLEIIIEE 180 (262)
T ss_pred CcccCCChHHHHHHHHHHHhCCCEEeeccCCCHH-HHHHHHhc-CceEeccccccccC------CcCcCCHHHHHHHHHh
Confidence 45678888887665 55789999999999954 55677664 543222 111222 2344468899999998
Q ss_pred cCCCCCCCceEEEec---CHhHHHHHHHcCCeEEEecCCC
Q psy6288 98 FDEKPQPSKCLVFED---APNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 98 ~~~~~~~~~~i~IGD---~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
.. ++ ++|+- +++|...|.+.|+..+++.+..
T Consensus 181 a~--VP----viVDAGiG~pSdAa~aMElG~DaVL~NTAi 214 (262)
T COG2022 181 AD--VP----VIVDAGIGTPSDAAQAMELGADAVLLNTAI 214 (262)
T ss_pred CC--CC----EEEeCCCCChhHHHHHHhcccceeehhhHh
Confidence 87 43 34443 4599999999999999998753
No 291
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=61.96 E-value=93 Score=25.93 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=56.6
Q ss_pred CCccchhHHHHHHHHHHC--CCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCCh-HHHHHHHHHcC
Q psy6288 23 GYNLAIGALRLINHLHKH--NIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP-DVFLVAAKRFD 99 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~--g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~-~~~~~~~~~~~ 99 (166)
.++..|.+..+++++... .+..-++-....+ .+.+.+++...-..++... ....+++.. ++...+.+..+
T Consensus 127 ~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~----~~~~~~~v~~VP~~~i~~~---~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 127 SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQ----DEVEARNIMAVPTVFLNGE---EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCH----hHHHhcCCcccCEEEECCc---EEEecCCCHHHHHHHHhcccc
Confidence 466677777777777654 2333333222212 2223345554443444433 344444444 44444443222
Q ss_pred -------CCCCCCceEEEecCHhHHHHHHHc---CCeEEEecC
Q psy6288 100 -------EKPQPSKCLVFEDAPNGVLGAKAA---GMSCVMVPD 132 (166)
Q Consensus 100 -------~~~~~~~~i~IGD~~~Di~~a~~~---G~~~i~v~~ 132 (166)
.....-.+++||-++..+.+|..+ |.+++.+..
T Consensus 200 ~~~~~~~~~~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~ 242 (517)
T PRK15317 200 ARAAEELNAKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE 242 (517)
T ss_pred ccchhhcccCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 002345799999999999998874 788877754
No 292
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=61.55 E-value=28 Score=26.87 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcC
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKD 64 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~g 64 (166)
||+..+-..|+..|.++.++|......+...+.+..+
T Consensus 63 ~GA~aLa~aL~~lG~~~~ivtd~~~~~~~~~~~~~~~ 99 (291)
T PF14336_consen 63 PGAAALARALQALGKEVVIVTDERCAPVVKAAVRAAG 99 (291)
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHHHHHHHHHHHHh
Confidence 7888899999999999999998876655555544333
No 293
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=60.55 E-value=26 Score=25.66 Aligned_cols=29 Identities=17% Similarity=0.000 Sum_probs=24.7
Q ss_pred CCccchhH-HHHHHHHHHCCCCEEEEeCCc
Q psy6288 23 GYNLAIGA-LRLINHLHKHNIPFAIATSSA 51 (166)
Q Consensus 23 ~~~~~~g~-~~~l~~l~~~g~~i~ivS~~~ 51 (166)
+..++++. .++++.+++.|+++.+.||+.
T Consensus 75 EPll~~~~~~~li~~~~~~g~~~~i~TNG~ 104 (235)
T TIGR02493 75 EPLLQPEFLSELFKACKELGIHTCLDTSGF 104 (235)
T ss_pred ccccCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 56677884 599999999999999999994
No 294
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=60.42 E-value=16 Score=25.57 Aligned_cols=31 Identities=6% Similarity=0.086 Sum_probs=25.9
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
.--+.+.++++.++++|.+++.+|+.....+
T Consensus 83 G~t~~~i~~~~~ak~~g~~ii~IT~~~~s~l 113 (179)
T TIGR03127 83 GETESLVTVAKKAKEIGATVAAITTNPESTL 113 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 3457788999999999999999999876644
No 295
>PLN02151 trehalose-phosphatase
Probab=60.37 E-value=18 Score=28.83 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=32.0
Q ss_pred hhhhhhc-------CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHH
Q psy6288 16 DMDGLLL-------GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELK 58 (166)
Q Consensus 16 ~~~~~~~-------~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~ 58 (166)
|+++.+. ...+.|++.++|+.|.+ +.+++|+|+.+...+...
T Consensus 104 DyDGTL~PIv~~P~~A~~~~~~~~aL~~La~-~~~vaIvSGR~~~~l~~~ 152 (354)
T PLN02151 104 DYDGTLSPIVDDPDRAFMSKKMRNTVRKLAK-CFPTAIVSGRCREKVSSF 152 (354)
T ss_pred ecCccCCCCCCCcccccCCHHHHHHHHHHhc-CCCEEEEECCCHHHHHHH
Confidence 5566555 23678899999999995 579999999998866443
No 296
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=59.82 E-value=45 Score=25.99 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=25.1
Q ss_pred CCccchhHHHHHHHHHH-CCC-CEEEEeCCch
Q psy6288 23 GYNLAIGALRLINHLHK-HNI-PFAIATSSAK 52 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~-~g~-~i~ivS~~~~ 52 (166)
+..+++++.++++.+++ .|+ .+.+.||+..
T Consensus 69 EPll~~~l~~li~~i~~~~gi~~v~itTNG~l 100 (334)
T TIGR02666 69 EPLLRKDLVELVARLAALPGIEDIALTTNGLL 100 (334)
T ss_pred cccccCCHHHHHHHHHhcCCCCeEEEEeCchh
Confidence 56678999999999987 588 8999999863
No 297
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=59.28 E-value=13 Score=21.06 Aligned_cols=26 Identities=15% Similarity=0.027 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
|+-.+.|..|.++|.+|.|.|-....
T Consensus 2 ~~~qegLr~L~~aG~~v~iM~~~eF~ 27 (55)
T PF05240_consen 2 PDYQEGLRRLCQAGAQVSIMTYSEFQ 27 (55)
T ss_dssp HHHHHHHHHHHHTT-EEEE--HHHHH
T ss_pred cHHHHHHHHHHHCCCeEEecCcHHHH
Confidence 56678999999999999998855433
No 298
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=58.91 E-value=21 Score=23.15 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=25.2
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
.-.....+.++.+++.|.+++.+|+.....+
T Consensus 64 g~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l 94 (131)
T PF01380_consen 64 GETRELIELLRFAKERGAPVILITSNSESPL 94 (131)
T ss_dssp STTHHHHHHHHHHHHTTSEEEEEESSTTSHH
T ss_pred ccchhhhhhhHHHHhcCCeEEEEeCCCCCch
Confidence 3457788899999999999999998875543
No 299
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=58.69 E-value=80 Score=24.10 Aligned_cols=92 Identities=15% Similarity=0.073 Sum_probs=57.7
Q ss_pred CCccchhHHHHHHHHHHC------CCCEEEEeCCchhh---HHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHH
Q psy6288 23 GYNLAIGALRLINHLHKH------NIPFAIATSSAKES---FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV 93 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~------g~~i~ivS~~~~~~---~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~ 93 (166)
..-|+..+...|.+|++. -+++++||..+-+. +-+.+..+ |+. .|..+- -.+..| ..
T Consensus 162 ~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~apah~RvI~TLr~W-gv~--vDEafF-----LgG~~K------~~ 227 (264)
T PF06189_consen 162 PEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAPAHERVIRTLRSW-GVR--VDEAFF-----LGGLPK------GP 227 (264)
T ss_pred cCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCchhHHHHHHHHHc-CCc--HhHHHH-----hCCCch------hH
Confidence 345677777778888763 56899999765332 32233332 442 121110 112233 45
Q ss_pred HHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCC
Q psy6288 94 AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTV 135 (166)
Q Consensus 94 ~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~ 135 (166)
+++.++ --+|++|...-++.|. .++++..|..|..
T Consensus 228 vL~~~~------phIFFDDQ~~H~~~a~-~~vps~hVP~gv~ 262 (264)
T PF06189_consen 228 VLKAFR------PHIFFDDQDGHLESAS-KVVPSGHVPYGVA 262 (264)
T ss_pred HHHhhC------CCEeecCchhhhhHhh-cCCCEEeccCCcC
Confidence 666666 2489999999999999 8899999988754
No 300
>KOG3189|consensus
Probab=58.33 E-value=19 Score=26.44 Aligned_cols=50 Identities=14% Similarity=0.198 Sum_probs=37.8
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS 76 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~ 76 (166)
....|.+.++|+.|++. +.+.+|.+++...+..++.. .+.+-||++++..
T Consensus 27 ~~~~~e~~~~l~~lr~~-v~ig~VggsDl~k~~eqlG~--~Vl~~fDY~F~EN 76 (252)
T KOG3189|consen 27 QKVTPEMLEFLQKLRKK-VTIGFVGGSDLSKQQEQLGD--NVLEEFDYVFSEN 76 (252)
T ss_pred ccCCHHHHHHHHHHhhh-eEEEEeecHHHHHHHHHhch--hHHhhhcccccCC
Confidence 45789999999999886 89999999987765555522 3456688887765
No 301
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=57.84 E-value=19 Score=31.39 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=35.2
Q ss_pred HhhhhhhhcC-------CccchhHHHHHHHHHH-CCCCEEEEeCCchhhHHHHH
Q psy6288 14 IFDMDGLLLG-------YNLAIGALRLINHLHK-HNIPFAIATSSAKESFELKT 59 (166)
Q Consensus 14 ~~~~~~~~~~-------~~~~~g~~~~l~~l~~-~g~~i~ivS~~~~~~~~~~l 59 (166)
..|+++.+.. ..+-+.+.++|+.|.+ .|..++|+|+.+...+...+
T Consensus 496 ~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~ 549 (726)
T PRK14501 496 LLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWF 549 (726)
T ss_pred EEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHh
Confidence 3456665553 2356899999999999 59999999999988775554
No 302
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=57.09 E-value=92 Score=24.30 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=21.4
Q ss_pred EEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 108 LVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 108 i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
++||..---++.|...|.+++.+-.+.
T Consensus 264 l~I~nDTGp~HlAaA~g~P~valfGpt 290 (348)
T PRK10916 264 AIVTNDSGLMHVAAALNRPLVALYGPS 290 (348)
T ss_pred EEEecCChHHHHHHHhCCCEEEEECCC
Confidence 566666666999999999999887653
No 303
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=56.33 E-value=34 Score=24.94 Aligned_cols=69 Identities=13% Similarity=0.108 Sum_probs=49.6
Q ss_pred ccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH--hHHHHHHH-cCCeEEEecCCCCCcccccccchhhCChhhhhhh
Q psy6288 81 VKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP--NGVLGAKA-AGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPE 156 (166)
Q Consensus 81 ~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~--~Di~~a~~-~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 156 (166)
.+.+| ...+++.++.+. -...-+++-||-. .|.+..++ .|.+.+.+.+|...+ ..++.....+.++..+
T Consensus 22 ~GSGK--TaLie~~~~~L~--~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH---~da~m~~~ai~~l~~~ 93 (202)
T COG0378 22 PGSGK--TALIEKTLRALK--DEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCH---LDASMNLEAIEELVLD 93 (202)
T ss_pred CCcCH--HHHHHHHHHHHH--hhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccC---CcHHHHHHHHHHHhhc
Confidence 34444 899999999998 5678888899955 79999999 999999999995443 2233444444444443
No 304
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=56.08 E-value=44 Score=26.28 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=49.5
Q ss_pred CCccchhHHHHHHHHHHCCCC-EEEEeCCchh-hHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIP-FAIATSSAKE-SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~-i~ivS~~~~~-~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
+..+..++.+.++.+++.++. +.+-||+..- .....+.++ |+... ++...-.+++.|.++- ..+
T Consensus 69 EPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~a~~Lk~A-Gl~rV-----------NVSLDsld~e~f~~IT-~~~- 134 (322)
T COG2896 69 EPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARRAADLKEA-GLDRV-----------NVSLDSLDPEKFRKIT-GRD- 134 (322)
T ss_pred CchhhcCHHHHHHHHhhcccceEEEecchhhHHHHHHHHHHc-CCcEE-----------EeecccCCHHHHHHHh-CCC-
Confidence 677899999999999987664 6677788522 233455554 66442 2333344566666655 222
Q ss_pred CCCCCceEEEecCHhHHHHHHHcCCe
Q psy6288 101 KPQPSKCLVFEDAPNGVLGAKAAGMS 126 (166)
Q Consensus 101 ~~~~~~~i~IGD~~~Di~~a~~~G~~ 126 (166)
. +..-+..|.+|.++|+.
T Consensus 135 -~-------~~~Vl~GI~~A~~~Gl~ 152 (322)
T COG2896 135 -R-------LDRVLEGIDAAVEAGLT 152 (322)
T ss_pred -c-------HHHHHHHHHHHHHcCCC
Confidence 1 12233677777777765
No 305
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=55.68 E-value=35 Score=27.10 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=19.8
Q ss_pred HHHHHHHcCCCCCCCceEEEecCHhHHHHHH
Q psy6288 91 FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAK 121 (166)
Q Consensus 91 ~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~ 121 (166)
++.++++++ ++.+++|.|+..|=...-
T Consensus 90 ld~vl~~~~----~~~~i~VsDGaeDE~vlP 116 (344)
T PF04123_consen 90 LDEVLSKFD----PDSAIVVSDGAEDERVLP 116 (344)
T ss_pred HHHHHHhCC----CCEEEEEecChhhhhhhH
Confidence 355566666 889999999998855543
No 306
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=55.61 E-value=18 Score=27.44 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHHHhhhhhhhcC--------CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceE
Q psy6288 1 MNISQVLNYVTHVIFDMDGLLLG--------YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHV 72 (166)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v 72 (166)
|.+.+++.....++.+.-..+.. ....| .-+|..|-.+..+++-+-..-++.-...=.+-..+.+|+.+.
T Consensus 4 ~~fQ~iI~~Lq~fWa~~GC~i~qPyD~EvGAGT~~P--~Tflr~Lgpepw~vaYvqPsRRP~DGRYGeNPNRLq~y~QfQ 81 (283)
T PRK09348 4 MTFQDIILTLQDYWADQGCVILQPYDMEVGAGTFHP--ATFLRALGPEPWNAAYVQPSRRPTDGRYGENPNRLQHYYQFQ 81 (283)
T ss_pred CcHHHHHHHHHHHHHHCCCEEECCcccccccccCCH--HHHHHhcCCCccccccccCCCCCCCCCcCCCchhhhhheeeE
Confidence 55666666666666653222210 11111 124555555555555554443322111101112344455443
Q ss_pred EecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEE
Q psy6288 73 VLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCV 128 (166)
Q Consensus 73 ~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i 128 (166)
+.-.+ .+..-.+.|..-++.+|++.....+-||.|.. +...+|.-.|+.+-
T Consensus 82 VilKP-----sP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVW 133 (283)
T PRK09348 82 VILKP-----SPDNIQELYLGSLEALGIDPLEHDIRFVEDNWESPTLGAWGLGWEVW 133 (283)
T ss_pred EEEcC-----CCccHHHHHHHHHHHhCCCccccceeEeecCCCCCcccccccceEEE
Confidence 33220 11223578999999999444446799999999 88999999887654
No 307
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=55.61 E-value=20 Score=27.34 Aligned_cols=121 Identities=12% Similarity=0.120 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHHHhhhhhhhcCCccch-----hH---HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceE
Q psy6288 1 MNISQVLNYVTHVIFDMDGLLLGYNLAI-----GA---LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHV 72 (166)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~---~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v 72 (166)
|.+.+++.....++.+.-..+. +|++ |. .-+|..|-.+..+++-|-..-++.-...=.+-..+.+|+.+.
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~--QPyD~EvGAGT~hPaTflralgpepw~vAYVqPsRRP~DGRYGeNPNRLq~yyQfQ 78 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIV--QPYDMEKGAGTMHPMTFLRSLGPEPWAVAYVEPSRRPTDGRYGENPNRLQHYYQFQ 78 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEE--cCcccccccccCCHHHHHHhcCCCcceeccccCCCCCCCCCCCCCchhhhheeeeE
Confidence 6677777777777776433222 1111 11 125666655556666555443332111101112344555444
Q ss_pred EecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEE
Q psy6288 73 VLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCV 128 (166)
Q Consensus 73 ~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i 128 (166)
+.-.+ .+..-.+.|..-++.+|++.....+-||.|.. +...+|.-.|+.+-
T Consensus 79 VilKP-----sP~niQelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGlGWEVW 130 (293)
T TIGR00388 79 VVIKP-----SPDNIQELYLDSLRALGIDPTEHDIRFVEDNWENPTLGAWGLGWEVW 130 (293)
T ss_pred EEECC-----CCccHHHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEE
Confidence 33220 11223578999999999444446799999999 88999999887643
No 308
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=55.57 E-value=20 Score=23.28 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
.+.+.++++.++++|.+++++|++...
T Consensus 73 ~~~~~~~~~~a~~~g~~iv~iT~~~~~ 99 (139)
T cd05013 73 TKETVEAAEIAKERGAKVIAITDSANS 99 (139)
T ss_pred CHHHHHHHHHHHHcCCeEEEEcCCCCC
Confidence 356788888999999999999988654
No 309
>PLN03017 trehalose-phosphatase
Probab=55.45 E-value=23 Score=28.30 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=32.9
Q ss_pred hhhhhhhc---C----CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHH
Q psy6288 15 FDMDGLLL---G----YNLAIGALRLINHLHKHNIPFAIATSSAKESFELK 58 (166)
Q Consensus 15 ~~~~~~~~---~----~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~ 58 (166)
.|+++.+. . ..+.+.+.+.|++|. +|++++|+|+.....+...
T Consensus 116 lD~DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~ 165 (366)
T PLN03017 116 LDYDGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNF 165 (366)
T ss_pred EecCCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHh
Confidence 35666555 1 257789999999999 6899999999998866433
No 310
>KOG1160|consensus
Probab=55.18 E-value=28 Score=28.72 Aligned_cols=39 Identities=13% Similarity=-0.067 Sum_probs=31.9
Q ss_pred hhhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288 16 DMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKES 54 (166)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~ 54 (166)
+...+......+|.+..+++.|++..+.-.++||.....
T Consensus 357 calslVgepi~yp~in~f~k~lH~k~issflvtnaq~pe 395 (601)
T KOG1160|consen 357 CALSLVGEPIMYPEINPFAKLLHQKLISSFLVTNAQFPE 395 (601)
T ss_pred heeeeecccccchhhhHHHHHHHhccchHHhcccccChH
Confidence 333444567889999999999999999999999997664
No 311
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=55.08 E-value=29 Score=26.42 Aligned_cols=30 Identities=27% Similarity=0.192 Sum_probs=25.6
Q ss_pred CCccchhH-HHHHHHHHHCCCCEEEEeCCch
Q psy6288 23 GYNLAIGA-LRLINHLHKHNIPFAIATSSAK 52 (166)
Q Consensus 23 ~~~~~~g~-~~~l~~l~~~g~~i~ivS~~~~ 52 (166)
+..++++. .++++.+++.|+++.+.||+..
T Consensus 135 EPll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 135 EPLLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred chhchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 45677886 6999999999999999999964
No 312
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=54.74 E-value=20 Score=25.12 Aligned_cols=30 Identities=7% Similarity=0.024 Sum_probs=25.4
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
..--+.+.++++.++++|.+++.+|+....
T Consensus 111 SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s 140 (177)
T cd05006 111 SGNSPNVLKALEAAKERGMKTIALTGRDGG 140 (177)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence 345688999999999999999999998655
No 313
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=54.54 E-value=15 Score=26.17 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=57.2
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc-ccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT-LKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl-~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..+.+++...|..++++ -+++-+|......- ...-..+.. ...+|.+.--. ...| -.+.+.++ +
T Consensus 71 ~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~-~iT~~~l~~q~ih~~~l~i~g-----~h~K------V~~vrth~--i 135 (194)
T COG5663 71 ALLAQLVKQVLPSLKEE-HRLIYITARKADLT-RITYAWLFIQNIHYDHLEIVG-----LHHK------VEAVRTHN--I 135 (194)
T ss_pred HHHHHHHHHHhHHHHhh-ceeeeeehhhHHHH-HHHHHHHHHhccchhhhhhhc-----cccc------chhhHhhc--c
Confidence 56678899999999987 56777776543321 111121111 12233322211 0112 23344555 3
Q ss_pred CCCceEEEecCH-hHHHHHHHcCCeEEEecCCCCCcc
Q psy6288 103 QPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKH 138 (166)
Q Consensus 103 ~~~~~i~IGD~~-~Di~~a~~~G~~~i~v~~~~~~~~ 138 (166)
+ +++.|+. +-.+.|+++|++.+.+..++....
T Consensus 136 d----lf~ed~~~na~~iAk~~~~~vilins~ynRkp 168 (194)
T COG5663 136 D----LFFEDSHDNAGQIAKNAGIPVILINSPYNRKP 168 (194)
T ss_pred C----ccccccCchHHHHHHhcCCcEEEecCcccccc
Confidence 3 6889988 888899999999999998865443
No 314
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=54.48 E-value=84 Score=23.10 Aligned_cols=80 Identities=14% Similarity=0.014 Sum_probs=48.2
Q ss_pred CCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEE---ecCHhHH
Q psy6288 41 NIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVF---EDAPNGV 117 (166)
Q Consensus 41 g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~I---GD~~~Di 117 (166)
|.+++|+++++.-... +..+.-..+.++ ++. --|.+..++.++.++| ++.+++.+| |.....+
T Consensus 68 g~~v~VLasGDP~f~G--------~g~~l~~~~~~~---~v~-iIPgiSS~q~a~ARlg--~~~~~~~~islHgr~~~~l 133 (210)
T COG2241 68 GRDVVVLASGDPLFSG--------VGRLLRRKFSCE---EVE-IIPGISSVQLAAARLG--WPLQDTEVISLHGRPVELL 133 (210)
T ss_pred CCCeEEEecCCcchhh--------hHHHHHHhcCcc---ceE-EecChhHHHHHHHHhC--CChHHeEEEEecCCCHHHH
Confidence 7888888888744321 111111111112 222 2466888999999999 888877665 3455677
Q ss_pred HHHHHcCCeEEEecCCC
Q psy6288 118 LGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 118 ~~a~~~G~~~i~v~~~~ 134 (166)
.....-|-..+..+...
T Consensus 134 ~~~~~~~~~~vil~~~~ 150 (210)
T COG2241 134 RPLLENGRRLVILTPDD 150 (210)
T ss_pred HHHHhCCceEEEeCCCC
Confidence 76665566666665543
No 315
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=54.46 E-value=11 Score=21.88 Aligned_cols=25 Identities=12% Similarity=0.004 Sum_probs=15.1
Q ss_pred HHHHHHHcCCCCCCCceEEEecCHhHHHHHH
Q psy6288 91 FLVAAKRFDEKPQPSKCLVFEDAPNGVLGAK 121 (166)
Q Consensus 91 ~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~ 121 (166)
.++.++++| -.+++||..+|++...
T Consensus 7 VqQLLK~fG------~~IY~gdr~~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFG------IIIYVGDRLWDIELME 31 (62)
T ss_dssp HHHHHHTTS-----------S-HHHHHHHHH
T ss_pred HHHHHHHCC------EEEEeCChHHHHHHHH
Confidence 456778888 3789999999998764
No 316
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=54.44 E-value=28 Score=23.43 Aligned_cols=82 Identities=11% Similarity=-0.044 Sum_probs=46.6
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhH--HHHHhhh---cCcccccceEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESF--ELKTSRH---KDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF 98 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~--~~~l~~~---~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~ 98 (166)
...+....++++..++++..++++|+...... ...+.+. .|..+ .-.++++. .|... ...++++
T Consensus 36 lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~-i~vivGG~--------~~~~~--~~~l~~~ 104 (132)
T TIGR00640 36 GPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPD-ILVVVGGV--------IPPQD--FDELKEM 104 (132)
T ss_pred CCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCC-CEEEEeCC--------CChHh--HHHHHHC
Confidence 44455667888999999999999987653221 1222221 13322 22334333 22221 2336667
Q ss_pred CCCCCCCceEEEecCHhHHHHH
Q psy6288 99 DEKPQPSKCLVFEDAPNGVLGA 120 (166)
Q Consensus 99 ~~~~~~~~~i~IGD~~~Di~~a 120 (166)
| .+.++.-|..+.++..+
T Consensus 105 G----vd~~~~~gt~~~~i~~~ 122 (132)
T TIGR00640 105 G----VAEIFGPGTPIPESAIF 122 (132)
T ss_pred C----CCEEECCCCCHHHHHHH
Confidence 7 67888888888666554
No 317
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=53.76 E-value=99 Score=23.66 Aligned_cols=27 Identities=19% Similarity=-0.068 Sum_probs=20.8
Q ss_pred EEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 108 LVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 108 i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
++||..---++.|...|.+++.+-.+.
T Consensus 257 l~I~~DSgp~HlAaa~g~P~i~lfg~t 283 (319)
T TIGR02193 257 AVVGVDTGLTHLAAALDKPTVTLYGAT 283 (319)
T ss_pred EEEeCCChHHHHHHHcCCCEEEEECCC
Confidence 556655556999999999999887554
No 318
>KOG0780|consensus
Probab=53.75 E-value=1.2e+02 Score=24.80 Aligned_cols=88 Identities=15% Similarity=0.221 Sum_probs=51.9
Q ss_pred CccchhHHHHHHHHH-HCCCCEEEEeCCchhhHHHHHhhhcCcc----cccceEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288 24 YNLAIGALRLINHLH-KHNIPFAIATSSAKESFELKTSRHKDTL----KLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF 98 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~-~~g~~i~ivS~~~~~~~~~~l~~~~gl~----~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~ 98 (166)
...++|+.+-|+... +.+++++. |......+ .+.. .|+. +-||.|+. + ..+..|-...+++...+--
T Consensus 138 DTFRagAfDQLkqnA~k~~iP~yg-syte~dpv--~ia~-egv~~fKke~fdvIIv-D---TSGRh~qe~sLfeEM~~v~ 209 (483)
T KOG0780|consen 138 DTFRAGAFDQLKQNATKARVPFYG-SYTEADPV--KIAS-EGVDRFKKENFDVIIV-D---TSGRHKQEASLFEEMKQVS 209 (483)
T ss_pred cccccchHHHHHHHhHhhCCeeEe-cccccchH--HHHH-HHHHHHHhcCCcEEEE-e---CCCchhhhHHHHHHHHHHH
Confidence 456778888777754 44555544 21211111 1111 1332 33555544 3 3566777888888877776
Q ss_pred CCCCCCCceEEEecCHhHHHHH
Q psy6288 99 DEKPQPSKCLVFEDAPNGVLGA 120 (166)
Q Consensus 99 ~~~~~~~~~i~IGD~~~Di~~a 120 (166)
+. +.|++++||=|....-.+.
T Consensus 210 ~a-i~Pd~vi~VmDasiGQaae 230 (483)
T KOG0780|consen 210 KA-IKPDEIIFVMDASIGQAAE 230 (483)
T ss_pred hh-cCCCeEEEEEeccccHhHH
Confidence 64 7899999999977554443
No 319
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=53.67 E-value=52 Score=22.78 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=23.8
Q ss_pred hcCCccchhHHHHHHHHHHCCCCEEEEeCC
Q psy6288 21 LLGYNLAIGALRLINHLHKHNIPFAIATSS 50 (166)
Q Consensus 21 ~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~ 50 (166)
.++....|++...+++|.+. |.++|+|..
T Consensus 64 FRnL~V~p~aq~v~keLt~~-y~vYivtaa 92 (180)
T COG4502 64 FRNLGVQPFAQTVLKELTSI-YNVYIVTAA 92 (180)
T ss_pred hhhcCccccHHHHHHHHHhh-heEEEEEec
Confidence 34567789999999999886 899999876
No 320
>PRK13937 phosphoheptose isomerase; Provisional
Probab=53.63 E-value=24 Score=25.15 Aligned_cols=31 Identities=6% Similarity=-0.063 Sum_probs=25.6
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKES 54 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~ 54 (166)
..--+.+.+.++.+++.|.+++.+|+.....
T Consensus 116 sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~ 146 (188)
T PRK13937 116 SGNSPNVLAALEKARELGMKTIGLTGRDGGK 146 (188)
T ss_pred CCCcHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 3456888899999999999999999987553
No 321
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=53.30 E-value=23 Score=31.67 Aligned_cols=45 Identities=18% Similarity=0.272 Sum_probs=34.3
Q ss_pred hhhhhhhcC-----CccchhHHHHHHHH-HHCCCCEEEEeCCchhhHHHHH
Q psy6288 15 FDMDGLLLG-----YNLAIGALRLINHL-HKHNIPFAIATSSAKESFELKT 59 (166)
Q Consensus 15 ~~~~~~~~~-----~~~~~g~~~~l~~l-~~~g~~i~ivS~~~~~~~~~~l 59 (166)
.|+++.+.. ..+-|++.+.|+.| ++.|..++|+|+.....+...+
T Consensus 601 LDyDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f 651 (854)
T PLN02205 601 LDYDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWF 651 (854)
T ss_pred EecCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHh
Confidence 356665552 25667999999998 6679999999999988775555
No 322
>COG0809 QueA S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) [Translation, ribosomal structure and biogenesis]
Probab=53.28 E-value=37 Score=26.82 Aligned_cols=91 Identities=8% Similarity=0.024 Sum_probs=49.7
Q ss_pred HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEE
Q psy6288 31 LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVF 110 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~I 110 (166)
.++|++|+++|+.++.+|=.--.. .+.. ....+.-+..+-++ ....+ +-...++++-. ....+++.|
T Consensus 189 ~~LL~kLk~kGv~~afvTLHVGaG---TF~p-V~~~~i~eH~MH~E---~~~v~----~eta~~i~~~k--~~GgRIiaV 255 (348)
T COG0809 189 EELLEKLKAKGVEIAFVTLHVGAG---TFRP-VKVENIEEHKMHSE---YYEVP----QETADAINAAK--ARGGRIIAV 255 (348)
T ss_pred HHHHHHHHHCCceEEEEEEEeccc---cccc-ceeccccccccchh---heecC----HHHHHHHHHHH--HcCCeEEEE
Confidence 468999999999999998332100 0000 01111112233333 22221 11222333333 346789999
Q ss_pred ecCH-hHHHHHHHcC-------CeEEEecCCC
Q psy6288 111 EDAP-NGVLGAKAAG-------MSCVMVPDPT 134 (166)
Q Consensus 111 GD~~-~Di~~a~~~G-------~~~i~v~~~~ 134 (166)
|-+. .-++.|.+.+ ...|++..|+
T Consensus 256 GTTs~R~LEsa~~~~~~~~~sg~T~IFI~PGy 287 (348)
T COG0809 256 GTTSVRTLESAAREAGLKAFSGWTDIFIYPGY 287 (348)
T ss_pred cchhHHHHHHHhcccCcCcCcCcccEEEcCCC
Confidence 9977 8888887643 5677777775
No 323
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=53.11 E-value=76 Score=22.19 Aligned_cols=81 Identities=9% Similarity=-0.004 Sum_probs=43.7
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccce-EEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceE
Q psy6288 30 ALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHH-VVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCL 108 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~-v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i 108 (166)
+.++++.+.+++.+++++.+.... + ..+.+.+. ..|... +++.. +... . +.....+++..+ .....++
T Consensus 35 ~~~ll~~~~~~~~~v~llG~~~~~-~-~~~~~~l~-~~yp~l~i~g~~---~g~~-~--~~~~~~i~~~I~--~~~pdiv 103 (171)
T cd06533 35 MPALLELAAQKGLRVFLLGAKPEV-L-EKAAERLR-ARYPGLKIVGYH---HGYF-G--PEEEEEIIERIN--ASGADIL 103 (171)
T ss_pred HHHHHHHHHHcCCeEEEECCCHHH-H-HHHHHHHH-HHCCCcEEEEec---CCCC-C--hhhHHHHHHHHH--HcCCCEE
Confidence 456788888889999999776633 3 23222221 122232 33323 2222 2 222233677777 6677888
Q ss_pred EEecCH--hHHHHHH
Q psy6288 109 VFEDAP--NGVLGAK 121 (166)
Q Consensus 109 ~IGD~~--~Di~~a~ 121 (166)
+||=+. ...-+.+
T Consensus 104 ~vglG~PkQE~~~~~ 118 (171)
T cd06533 104 FVGLGAPKQELWIAR 118 (171)
T ss_pred EEECCCCHHHHHHHH
Confidence 888754 4444433
No 324
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=53.10 E-value=1.1e+02 Score=23.92 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEE
Q psy6288 86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM 129 (166)
Q Consensus 86 p~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~ 129 (166)
++-...+.+.+.++....+-.++-+||+++|+..-..+-.+.+.
T Consensus 208 dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi 251 (302)
T PRK12702 208 PGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVL 251 (302)
T ss_pred CHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEe
Confidence 45677788888877211244899999999999999999988776
No 325
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=52.91 E-value=25 Score=24.65 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=25.8
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
.-.+.+.++++.+++.|.+++.+|+.....+
T Consensus 86 G~t~~~i~~~~~ak~~g~~iI~IT~~~~s~l 116 (179)
T cd05005 86 GETSSVVNAAEKAKKAGAKVVLITSNPDSPL 116 (179)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCCch
Confidence 3457788899999999999999999876644
No 326
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=52.76 E-value=65 Score=23.85 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHhh----hhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 1 MNISQVLNYVTHVIFD----MDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 1 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
|+.+.+........++ +.-+..-....||-..+=+-|++++++.+|++..+...++..+.+. |+.
T Consensus 43 M~Pe~veaav~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeq-GlG 111 (277)
T COG1927 43 MDPECVEAAVTEMLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQ-GLG 111 (277)
T ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhc-CCe
Confidence 4555444444444433 3334445566888889999999999999999999977777777664 663
No 327
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=52.41 E-value=60 Score=21.43 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=25.9
Q ss_pred CCccchhHHHHHHHHHHC---CCCEEEEeCCchh
Q psy6288 23 GYNLAIGALRLINHLHKH---NIPFAIATSSAKE 53 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~---g~~i~ivS~~~~~ 53 (166)
+...+++....+..+.+. ++++.+.|++...
T Consensus 55 ep~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~ 88 (166)
T PF04055_consen 55 EPTLHPDFIELLELLRKIKKRGIRISINTNGTLL 88 (166)
T ss_dssp TGGGSCHHHHHHHHHHHCTCTTEEEEEEEESTTH
T ss_pred CCCcchhHHHHHHHHHHhhccccceeeeccccch
Confidence 456788898999888876 9999999999864
No 328
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=52.39 E-value=18 Score=26.61 Aligned_cols=31 Identities=16% Similarity=0.091 Sum_probs=20.4
Q ss_pred CccchhHHHHHHHHHHC-CCCEEEEeCCchhh
Q psy6288 24 YNLAIGALRLINHLHKH-NIPFAIATSSAKES 54 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~-g~~i~ivS~~~~~~ 54 (166)
..+.+++.++|+.|.+. +..++|+|+.+...
T Consensus 18 ~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~ 49 (235)
T PF02358_consen 18 AVPPPELRELLRALAADPNNTVAIVSGRSLDD 49 (235)
T ss_dssp ----HHHHHHHHHHHHHSE--EEEE-SS-HHH
T ss_pred cCCCHHHHHHHHHHhccCCCEEEEEEeCCHHH
Confidence 46789999999999875 45799999999876
No 329
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=52.08 E-value=17 Score=27.71 Aligned_cols=99 Identities=15% Similarity=0.061 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHCCCCEEE-EeCCc--------hhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288 29 GALRLINHLHKHNIPFAI-ATSSA--------KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD 99 (166)
Q Consensus 29 g~~~~l~~l~~~g~~i~i-vS~~~--------~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 99 (166)
...++.+++-+.|.-++| =++.+ .+.....+..++.+..-.|+-+--. .-........-+...+++.|
T Consensus 108 ~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLH---tes~~~~~~~~i~~~ak~~G 184 (285)
T COG1831 108 HALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLH---TESLDEETYEEIAEMAKEAG 184 (285)
T ss_pred HHHHHHHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCcEEEe---cCCCChHHHHHHHHHHHHhC
Confidence 344566777778877777 23332 2222223333333333333322221 11223334566778888899
Q ss_pred CCCCCCceEEEecCHhHHHHHHHcCC-eEEEecCC
Q psy6288 100 EKPQPSKCLVFEDAPNGVLGAKAAGM-SCVMVPDP 133 (166)
Q Consensus 100 ~~~~~~~~i~IGD~~~Di~~a~~~G~-~~i~v~~~ 133 (166)
+++..++.==-++.+..+. +.|+ ++|..++.
T Consensus 185 --~~~~~VVkHha~p~v~~~~-~~Gi~pSV~asr~ 216 (285)
T COG1831 185 --IKPYRVVKHHAPPLVLKCE-EVGIFPSVPASRK 216 (285)
T ss_pred --CCcceeEeecCCccchhhh-hcCcCCcccccHH
Confidence 8888888655555544444 4776 57776654
No 330
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=51.82 E-value=23 Score=24.26 Aligned_cols=30 Identities=7% Similarity=0.041 Sum_probs=25.0
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKES 54 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~ 54 (166)
.-.+.+.+.++.++++|.+++.+|+.....
T Consensus 90 G~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 119 (154)
T TIGR00441 90 GNSKNVLKAIEAAKDKGMKTITLAGKDGGK 119 (154)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 446788899999999999999999987553
No 331
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=51.71 E-value=1.5e+02 Score=25.11 Aligned_cols=97 Identities=14% Similarity=0.139 Sum_probs=49.5
Q ss_pred chhHHHHH-HHHHHCCCCEEEEeCCchhhHHHHHhhh---cCcccccceEEecCCCCCccCCCCChHHHHHH---HHHcC
Q psy6288 27 AIGALRLI-NHLHKHNIPFAIATSSAKESFELKTSRH---KDTLKLFHHVVLGSADPEVKQGKPAPDVFLVA---AKRFD 99 (166)
Q Consensus 27 ~~g~~~~l-~~l~~~g~~i~ivS~~~~~~~~~~l~~~---~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~---~~~~~ 99 (166)
-+|+.+-+ +.+++.|.+++++++.........+.+. .|+ ..|+.++... + ..|+ .+....+ +.+.+
T Consensus 194 G~g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~-~v~~~v~p~~---E--~~ks-l~~v~~~~~~l~~~~ 266 (542)
T PRK14021 194 GEGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLLRQGGY-EVSDIVIPDA---E--AGKT-IEVANGIWQRLGNEG 266 (542)
T ss_pred cCChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHHHhCCC-ceEEEEeCCC---c--ccCC-HHHHHHHHHHHHhcC
Confidence 34554433 3345556777777766433222233222 233 2333333322 1 1232 2333322 33444
Q ss_pred CCC-CCCceEEEecCH-hHHHHHHH----cCCeEEEecC
Q psy6288 100 EKP-QPSKCLVFEDAP-NGVLGAKA----AGMSCVMVPD 132 (166)
Q Consensus 100 ~~~-~~~~~i~IGD~~-~Di~~a~~----~G~~~i~v~~ 132 (166)
. ..+-++-||-+. .|+..+-+ .|++.|.|.+
T Consensus 267 --~~r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 267 --FTRSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred --CCCCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 3 345566699966 88877766 5999888876
No 332
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=51.60 E-value=1.4e+02 Score=24.86 Aligned_cols=102 Identities=18% Similarity=0.200 Sum_probs=56.1
Q ss_pred CCccchhHHHHHHHHHHC--CCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc-C
Q psy6288 23 GYNLAIGALRLINHLHKH--NIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF-D 99 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~--g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~-~ 99 (166)
.++..|.+..+++.+... ++..-++-....+ ... +.++....-..++..+ ....++|...-+...+.+. +
T Consensus 128 ~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~---~~~-~~~~v~~VP~~~i~~~---~~~~g~~~~~~~~~~l~~~~~ 200 (515)
T TIGR03140 128 TCQNCPDVVQALNQMALLNPNISHTMIDGALFQ---DEV-EALGIQGVPAVFLNGE---EFHNGRMDLAELLEKLEETAG 200 (515)
T ss_pred CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCH---HHH-HhcCCcccCEEEECCc---EEEecCCCHHHHHHHHhhccC
Confidence 466677777777777654 2222222222222 222 3345554443444444 4444555544443333322 1
Q ss_pred -------CCCCCCceEEEecCHhHHHHHHHc---CCeEEEec
Q psy6288 100 -------EKPQPSKCLVFEDAPNGVLGAKAA---GMSCVMVP 131 (166)
Q Consensus 100 -------~~~~~~~~i~IGD~~~Di~~a~~~---G~~~i~v~ 131 (166)
......++++||-++..+.+|..+ |.+++.+.
T Consensus 201 ~~~~~~~~~~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~ 242 (515)
T TIGR03140 201 VEAASALEQLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVA 242 (515)
T ss_pred cccchhccccCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEe
Confidence 014567899999999999998874 77777764
No 333
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=51.44 E-value=1.2e+02 Score=25.03 Aligned_cols=103 Identities=13% Similarity=0.135 Sum_probs=60.5
Q ss_pred cCCccchhHHHHHHHHHH-CCCCEEEEe-CCc-hhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHc
Q psy6288 22 LGYNLAIGALRLINHLHK-HNIPFAIAT-SSA-KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF 98 (166)
Q Consensus 22 ~~~~~~~g~~~~l~~l~~-~g~~i~ivS-~~~-~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~ 98 (166)
.....+|.+.+-|+.|-+ .|++++-.. +.+ ...+...+..+ . ...+|.++. + ..+...-+.++...+.+-.
T Consensus 135 aaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a-k-~~~~DvvIv-D---TAGRl~ide~Lm~El~~Ik 208 (451)
T COG0541 135 AADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA-K-EEGYDVVIV-D---TAGRLHIDEELMDELKEIK 208 (451)
T ss_pred ecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH-H-HcCCCEEEE-e---CCCcccccHHHHHHHHHHH
Confidence 356678999999999964 477766653 222 22233333222 2 233555444 3 2344455667777666665
Q ss_pred CCCCCCCceEEEecCHhHHHHHHH-------cCCeEEEec
Q psy6288 99 DEKPQPSKCLVFEDAPNGVLGAKA-------AGMSCVMVP 131 (166)
Q Consensus 99 ~~~~~~~~~i~IGD~~~Di~~a~~-------~G~~~i~v~ 131 (166)
.. +.|+++++|=|+...=.++.. .|+..+.++
T Consensus 209 ~~-~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 209 EV-INPDETLLVVDAMIGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred hh-cCCCeEEEEEecccchHHHHHHHHHhhhcCCceEEEE
Confidence 54 789999999998754333322 466666665
No 334
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=49.37 E-value=21 Score=26.92 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=64.0
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCC-------CCCccCCCCC-hHHHHHHHH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSA-------DPEVKQGKPA-PDVFLVAAK 96 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~-------~~~~~~~Kp~-~~~~~~~~~ 96 (166)
...+.+.++.+.+.+. -++ ++|.+.+... .+.....-..+|-.|..... ..-....-|- .+.=..+++
T Consensus 112 ~~v~s~~~a~~~l~~~-~~v-llttGsk~l~--~f~~~~~~~r~~~RvLP~~~s~~g~~~~~iiam~gPfs~e~n~aL~~ 187 (248)
T PRK08057 112 IEVDDIEEAAEALAPF-RRV-LLTTGRQPLA--HFAAILPEHRLLVRVLPPPEVLLGLPRAEIIALRGPFSLELERALLR 187 (248)
T ss_pred EEECCHHHHHHHhhcc-CCE-EEecCcchHH--HHhhcCCCCEEEEEECCCchhcCCCChhhEEEeeCCCCHHHHHHHHH
Confidence 4456788888888766 344 4444443322 11111111222323322210 0011112232 344556677
Q ss_pred HcCCCCCCCceEEE---ec--CHhHHHHHHHcCCeEEEecCCCCCcccccccchhhCChhhhhhhhcC
Q psy6288 97 RFDEKPQPSKCLVF---ED--APNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEEFKPELYG 159 (166)
Q Consensus 97 ~~~~~~~~~~~i~I---GD--~~~Di~~a~~~G~~~i~v~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 159 (166)
+++ ++ +++- |. ...=+.+|++.|++.+.+.++.. .....+++++.++..++.+
T Consensus 188 ~~~--i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~-----~~~~~~~~~~~e~~~~l~~ 245 (248)
T PRK08057 188 QHR--ID---VVVTKNSGGAGTEAKLEAARELGIPVVMIARPAL-----PYADREFEDVAELVAWLRH 245 (248)
T ss_pred HcC--CC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCC-----CCCCcccCCHHHHHHHHHH
Confidence 777 21 1221 44 34558999999999999988841 2223567888888888764
No 335
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=49.28 E-value=1.3e+02 Score=24.46 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=42.2
Q ss_pred cchhHHHHHHHHHHCCC--------------CEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHH
Q psy6288 26 LAIGALRLINHLHKHNI--------------PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVF 91 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~--------------~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~ 91 (166)
++.-..++.++|.++|+ +|+|+|+.+-..... +.+...-..+.-.+.-.+ ..-.+.-.+.-+
T Consensus 106 l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa~~D-~~~~~~~r~p~~~~~~~~---~~vQG~~A~~~i 181 (438)
T PRK00286 106 LAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAAIRD-ILTVLRRRFPLVEVIIYP---TLVQGEGAAASI 181 (438)
T ss_pred HHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHHHHH-HHHHHHhcCCCCeEEEec---CcCcCccHHHHH
Confidence 33444455666666554 599999998655433 333222222211333333 233344456667
Q ss_pred HHHHHHcCCCCCCCceEEEe
Q psy6288 92 LVAAKRFDEKPQPSKCLVFE 111 (166)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~IG 111 (166)
..++++.+ ...-.+|+|+
T Consensus 182 ~~al~~~~--~~~~Dviii~ 199 (438)
T PRK00286 182 VAAIERAN--ARGEDVLIVA 199 (438)
T ss_pred HHHHHHhc--CCCCCEEEEe
Confidence 77777777 3224677775
No 336
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=49.15 E-value=35 Score=21.09 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHC--CCCEEEEeCCchhhHHHHHhhhcCcccc
Q psy6288 29 GALRLINHLHKH--NIPFAIATSSAKESFELKTSRHKDTLKL 68 (166)
Q Consensus 29 g~~~~l~~l~~~--g~~i~ivS~~~~~~~~~~l~~~~gl~~~ 68 (166)
...++++.+++. +.+++++|+...........+ .|...|
T Consensus 57 ~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~-~g~~~~ 97 (112)
T PF00072_consen 57 DGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALR-AGADDY 97 (112)
T ss_dssp BHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHH-TTESEE
T ss_pred cccccccccccccccccEEEecCCCCHHHHHHHHH-CCCCEE
Confidence 344566666553 356666665554333333333 254433
No 337
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=49.03 E-value=1.3e+02 Score=24.36 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=56.2
Q ss_pred HHHHHHHHCC-C-CEEEEeCCch--hhHHHHHhhhcCcc-cccceEEecCCCCCccCCCCC---hHHHHHHHHHcCCCCC
Q psy6288 32 RLINHLHKHN-I-PFAIATSSAK--ESFELKTSRHKDTL-KLFHHVVLGSADPEVKQGKPA---PDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 32 ~~l~~l~~~g-~-~i~ivS~~~~--~~~~~~l~~~~gl~-~~fd~v~~~~~~~~~~~~Kp~---~~~~~~~~~~~~~~~~ 103 (166)
.++..+++.+ + ...|+|+..+ +.. ....+.+++. .-++.-+..+ ....++-- ...+..++++ ..
T Consensus 21 pli~~~~~~~~~~~~vi~TGQH~d~em~-~~~le~~~i~~pdy~L~i~~~---~~tl~~~t~~~i~~~~~vl~~----~k 92 (383)
T COG0381 21 PLVKALEKDPDFELIVIHTGQHRDYEML-DQVLELFGIRKPDYDLNIMKP---GQTLGEITGNIIEGLSKVLEE----EK 92 (383)
T ss_pred HHHHHHHhCCCCceEEEEecccccHHHH-HHHHHHhCCCCCCcchhcccc---CCCHHHHHHHHHHHHHHHHHh----hC
Confidence 4678888775 5 4677788876 544 4445556776 3333322211 11111111 1223344443 45
Q ss_pred CCceEEEecCHhHHH---HHHHcCCeEEEecCCCCCcc
Q psy6288 104 PSKCLVFEDAPNGVL---GAKAAGMSCVMVPDPTVPKH 138 (166)
Q Consensus 104 ~~~~i~IGD~~~Di~---~a~~~G~~~i~v~~~~~~~~ 138 (166)
|+=+++=||+.+=+. +|....++...|..|.++..
T Consensus 93 PD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~ 130 (383)
T COG0381 93 PDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGD 130 (383)
T ss_pred CCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCC
Confidence 999999999886555 44455777777777765433
No 338
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=48.79 E-value=32 Score=24.65 Aligned_cols=30 Identities=7% Similarity=0.028 Sum_probs=25.3
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKES 54 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~ 54 (166)
.--+.+.++++.++++|.+++.+|+.....
T Consensus 122 G~t~~~i~~~~~ak~~g~~iI~iT~~~~s~ 151 (192)
T PRK00414 122 GNSGNIIKAIEAARAKGMKVITLTGKDGGK 151 (192)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence 446888999999999999999999987553
No 339
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=48.38 E-value=1.1e+02 Score=22.81 Aligned_cols=91 Identities=20% Similarity=0.131 Sum_probs=50.6
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCC
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPS 105 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 105 (166)
+.+...++++.|.+.|++++++.+.........+.+..+- ..++. ..++.+..-+..+++...
T Consensus 138 ~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~----~~~~~-------~~~~~~l~e~~~li~~~~------ 200 (279)
T cd03789 138 PAERFAALADRLLARGARVVLTGGPAERELAEEIAAALGG----PRVVN-------LAGKTSLRELAALLARAD------ 200 (279)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCC----Ccccc-------CcCCCCHHHHHHHHHhCC------
Confidence 4568888999998889998887665533332333332110 01110 112222333333333333
Q ss_pred ceEEEecCHhHHHHHHHcCCeEEEecCCCC
Q psy6288 106 KCLVFEDAPNGVLGAKAAGMSCVMVPDPTV 135 (166)
Q Consensus 106 ~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~ 135 (166)
.++-.|+ .-+..|...|.+++.+..+..
T Consensus 201 -l~I~~Ds-g~~HlA~a~~~p~i~l~g~~~ 228 (279)
T cd03789 201 -LVVTNDS-GPMHLAAALGTPTVALFGPTD 228 (279)
T ss_pred -EEEeeCC-HHHHHHHHcCCCEEEEECCCC
Confidence 4444455 558888899999998876543
No 340
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=48.36 E-value=28 Score=20.69 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=20.2
Q ss_pred cchhHHHHHHHHHHCCCCEEEEe
Q psy6288 26 LAIGALRLINHLHKHNIPFAIAT 48 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS 48 (166)
--+.+.++++.++++|.+++.+|
T Consensus 59 ~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 59 RTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEe
Confidence 35778899999999999999998
No 341
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=48.21 E-value=29 Score=22.52 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=21.5
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCc
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSA 51 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~ 51 (166)
--+.+.+.++.+++.|.+++.+|+..
T Consensus 55 ~t~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 55 NTEETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34678888999999999999999765
No 342
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=47.81 E-value=1.3e+02 Score=23.35 Aligned_cols=44 Identities=11% Similarity=0.048 Sum_probs=31.9
Q ss_pred CChHHHHHHHHHcCCCCCCCceEEEec--CHhHHHHHHHcCCeEEEecCCC
Q psy6288 86 PAPDVFLVAAKRFDEKPQPSKCLVFED--APNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 86 p~~~~~~~~~~~~~~~~~~~~~i~IGD--~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
+....+.++.+..+ ++ ++.-|+ +..|+..+-..|...+.+.+..
T Consensus 148 ~~~~ll~~v~~~~~--iP---viaaGGI~~~~~~~~al~~GA~gV~iGt~f 193 (307)
T TIGR03151 148 TTMALVPQVVDAVS--IP---VIAAGGIADGRGMAAAFALGAEAVQMGTRF 193 (307)
T ss_pred cHHHHHHHHHHHhC--CC---EEEECCCCCHHHHHHHHHcCCCEeecchHH
Confidence 34566777777666 43 777777 4488999999999999887643
No 343
>KOG2832|consensus
Probab=47.68 E-value=63 Score=25.92 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=50.7
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP 104 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 104 (166)
.-.||+.-+|..+.. .|.++++|+...-.+ ..+.+.+.-..+.-+-+-.+ .... .-..-.+-+.++| -++
T Consensus 214 ~kRPgvD~FL~~~a~-~yEIVi~sse~gmt~-~pl~d~lDP~g~IsYkLfr~---~t~y---~~G~HvKdls~LN--Rdl 283 (393)
T KOG2832|consen 214 KKRPGVDYFLGHLAK-YYEIVVYSSEQGMTV-FPLLDALDPKGYISYKLFRG---ATKY---EEGHHVKDLSKLN--RDL 283 (393)
T ss_pred ccCchHHHHHHhhcc-cceEEEEecCCccch-hhhHhhcCCcceEEEEEecC---cccc---cCccchhhhhhhc--ccc
Confidence 468999999999995 599999999874433 44555444333333322222 1111 1111134478888 899
Q ss_pred CceEEEecCHh
Q psy6288 105 SKCLVFEDAPN 115 (166)
Q Consensus 105 ~~~i~IGD~~~ 115 (166)
+++++|.-..+
T Consensus 284 ~kVivVd~d~~ 294 (393)
T KOG2832|consen 284 QKVIVVDFDAN 294 (393)
T ss_pred ceeEEEEcccc
Confidence 99999986554
No 344
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=47.42 E-value=1.3e+02 Score=23.20 Aligned_cols=27 Identities=19% Similarity=0.028 Sum_probs=21.1
Q ss_pred EEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 108 LVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 108 i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
++||..---++.|...|.+++.+-.+.
T Consensus 254 l~I~~DSGp~HlAaA~~~P~i~lfG~t 280 (334)
T TIGR02195 254 AVVTNDSGLMHVAAALNRPLVALYGST 280 (334)
T ss_pred EEEeeCCHHHHHHHHcCCCEEEEECCC
Confidence 566666666999999999999886654
No 345
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=47.34 E-value=75 Score=24.98 Aligned_cols=94 Identities=11% Similarity=-0.051 Sum_probs=50.4
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCc-hhh-HHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSA-KES-FELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~-~~~-~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~ 103 (166)
-.+-+..+|++.++.|+--+=++... ... ++.+|.+++||.+. .|+.++ ..........+-+.+.+.+..-+.
T Consensus 39 SR~~v~rlL~~Ar~~GiV~I~i~~~~~~~~~Le~~L~~~fgL~~a--~VVp~~---~~~~~~~~~~lg~aaA~~l~~~l~ 113 (321)
T COG2390 39 SRATVSRLLAKAREEGIVKISINSPVEGCLELEQQLKERFGLKEA--IVVPSD---SDADDSILRRLGRAAAQYLESLLK 113 (321)
T ss_pred CHHHHHHHHHHHHHCCeEEEEeCCCCcchHHHHHHHHHhcCCCeE--EEEcCC---CCCchHHHHHHHHHHHHHHHHhCC
Confidence 36677889999999998544444332 222 55788888888663 455544 111111111122222222221145
Q ss_pred CCceEEEecCHhHHHHHHHcC
Q psy6288 104 PSKCLVFEDAPNGVLGAKAAG 124 (166)
Q Consensus 104 ~~~~i~IGD~~~Di~~a~~~G 124 (166)
+..++-||=+-+=...+....
T Consensus 114 ~gdvigV~wGrTv~a~~~~l~ 134 (321)
T COG2390 114 PGDVIGVGWGRTLSAVVDNLP 134 (321)
T ss_pred CCCEEEEeccHHHHHHHHhcC
Confidence 666777776666555555543
No 346
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.06 E-value=27 Score=21.28 Aligned_cols=25 Identities=8% Similarity=0.020 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCch
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSAK 52 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~~ 52 (166)
....++++.|+++|+++.++|.+..
T Consensus 53 ~~~~~i~~~L~~~G~~~~~~~~~~~ 77 (85)
T cd04906 53 EELAELLEDLKSAGYEVVDLSDDEL 77 (85)
T ss_pred HHHHHHHHHHHHCCCCeEECCCCHH
Confidence 4588899999999999998887763
No 347
>PF03020 LEM: LEM domain; InterPro: IPR003887 The LEM domain is found in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin []. Defects in the emerin gene are a cause of Emery-Dreifuss muscular dystrophy, an X-linked disorder characterised by early contractures, muscle wasting, weakness and cardiomyopathy.; GO: 0005635 nuclear envelope; PDB: 2ODG_C 2ODC_I 1JEI_A 1H9F_A 1GJJ_A.
Probab=46.12 E-value=3.3 Score=22.24 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=18.3
Q ss_pred HHHHHHHHCCCCEEEEeCCchhhHHHHHhh
Q psy6288 32 RLINHLHKHNIPFAIATSSAKESFELKTSR 61 (166)
Q Consensus 32 ~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~ 61 (166)
++.++|++.|+..+-+|...+....+++.+
T Consensus 10 ELr~~L~~~G~~~GPIt~tTR~vY~kkL~k 39 (43)
T PF03020_consen 10 ELREELREYGEPPGPITPTTRKVYEKKLAK 39 (43)
T ss_dssp CCHHCCCCCT-S-----CCCHHHHHHHCHH
T ss_pred HHHHHHHHcCCCCCCCCcccHHHHHHHHHH
Confidence 356778889999999999998877777654
No 348
>PRK13938 phosphoheptose isomerase; Provisional
Probab=45.88 E-value=35 Score=24.66 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=25.6
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
.--+.+.++++.+++.|.+++.+|++....+
T Consensus 124 G~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~L 154 (196)
T PRK13938 124 GNSMSVLRAAKTARELGVTVVAMTGESGGQL 154 (196)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 3467888999999999999999999875533
No 349
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=45.73 E-value=63 Score=21.01 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc---cccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCC
Q psy6288 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL---KLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPS 105 (166)
Q Consensus 29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~---~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 105 (166)
-....++.|+++|++++.+.....+......-. .+. ...|.++-+- | +.....++++... ....
T Consensus 15 ~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~--sl~e~p~~iDlavv~~---------~-~~~~~~~v~~~~~-~g~~ 81 (116)
T PF13380_consen 15 FGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYP--SLAEIPEPIDLAVVCV---------P-PDKVPEIVDEAAA-LGVK 81 (116)
T ss_dssp HHHHHHHHHHHTT-EEEEESTTCSEETTEE-BS--SGGGCSST-SEEEE-S-----------HHHHHHHHHHHHH-HT-S
T ss_pred hHHHHHHHHHhCCCEEEEECCCceEECcEEeec--cccCCCCCCCEEEEEc---------C-HHHHHHHHHHHHH-cCCC
Confidence 346789999999999999977663322111111 122 2233333322 1 2222222222210 2367
Q ss_pred ceEEEecCH--hHHHHHHHcCCeEEE
Q psy6288 106 KCLVFEDAP--NGVLGAKAAGMSCVM 129 (166)
Q Consensus 106 ~~i~IGD~~--~Di~~a~~~G~~~i~ 129 (166)
.+|++.... .-+..|++.|+..++
T Consensus 82 ~v~~~~g~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 82 AVWLQPGAESEELIEAAREAGIRVIG 107 (116)
T ss_dssp EEEE-TTS--HHHHHHHHHTT-EEEE
T ss_pred EEEEEcchHHHHHHHHHHHcCCEEEe
Confidence 788877754 556777888887664
No 350
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=45.53 E-value=91 Score=24.66 Aligned_cols=95 Identities=15% Similarity=0.106 Sum_probs=50.7
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceE-EecCCCCCccCCCCChHHHHHHHHHcCC--CCCCCc
Q psy6288 30 ALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHV-VLGSADPEVKQGKPAPDVFLVAAKRFDE--KPQPSK 106 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v-~~~~~~~~~~~~Kp~~~~~~~~~~~~~~--~~~~~~ 106 (166)
.+.++.+|++.|+.+.|.+..... . ..+++.+|+ +++ ++..+ .....|- .....+..+-+.. ..+|+
T Consensus 16 Fk~~I~eL~~~GheV~it~R~~~~-~-~~LL~~yg~----~y~~iG~~g--~~~~~Kl-~~~~~R~~~l~~~~~~~~pD- 85 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITARDKDE-T-EELLDLYGI----DYIVIGKHG--DSLYGKL-LESIERQYKLLKLIKKFKPD- 85 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEeccch-H-HHHHHHcCC----CeEEEcCCC--CCHHHHH-HHHHHHHHHHHHHHHhhCCC-
Confidence 456899999999999998887633 3 345565666 333 33330 1111110 0111111111110 02243
Q ss_pred eEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 107 CLVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 107 ~i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
+++-..++.-...|.-.|.++|.+....
T Consensus 86 v~is~~s~~a~~va~~lgiP~I~f~D~e 113 (335)
T PF04007_consen 86 VAISFGSPEAARVAFGLGIPSIVFNDTE 113 (335)
T ss_pred EEEecCcHHHHHHHHHhCCCeEEEecCc
Confidence 3333344555568999999999988753
No 351
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=45.43 E-value=1.7e+02 Score=23.97 Aligned_cols=88 Identities=8% Similarity=0.009 Sum_probs=52.8
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCC--------chhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288 28 IGALRLINHLHKHNIPFAIATSS--------AKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD 99 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~--------~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 99 (166)
..+.++++.|.++|+++.+++.. ....+...+.+.+. ..-...+-.+ + ..+.-+..++....
T Consensus 260 ~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~--~~~~~~vi~~---~-----~~~~e~~~iIs~~d 329 (426)
T PRK10017 260 KAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVS--DPARYHVVMD---E-----LNDLEMGKILGACE 329 (426)
T ss_pred HHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcc--cccceeEecC---C-----CChHHHHHHHhhCC
Confidence 34557788888889999999853 11222234444332 1101111112 1 11223334444444
Q ss_pred CCCCCCceEEEecCHhHHHHHHHcCCeEEEecCC
Q psy6288 100 EKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 100 ~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
++||-.+.-.-.|..+|.+++.+.+.
T Consensus 330 --------l~ig~RlHa~I~a~~~gvP~i~i~Y~ 355 (426)
T PRK10017 330 --------LTVGTRLHSAIISMNFGTPAIAINYE 355 (426)
T ss_pred --------EEEEecchHHHHHHHcCCCEEEeeeh
Confidence 78999999999999999999999875
No 352
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=45.02 E-value=36 Score=20.81 Aligned_cols=31 Identities=10% Similarity=-0.009 Sum_probs=25.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
...++|.+...|+.|.++|+-..+-+.+.++
T Consensus 43 KpkiY~~Vc~yLe~L~~eg~l~~i~~~~~~d 73 (78)
T PF13034_consen 43 KPKIYPYVCNYLEYLVKEGKLSFIENDGTRD 73 (78)
T ss_pred CceeHHHHHHHHHHHHHCCeEEEEecCcchh
Confidence 4678999999999999999877777766554
No 353
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=44.91 E-value=32 Score=24.36 Aligned_cols=59 Identities=24% Similarity=0.222 Sum_probs=37.4
Q ss_pred CCCCceEEEecCHhHHHHHHH----cCCeEEEecCCCCCcc---------cccccchhhCChhhhhhhhcCC
Q psy6288 102 PQPSKCLVFEDAPNGVLGAKA----AGMSCVMVPDPTVPKH---------RTEAADLVLNSLEEFKPELYGL 160 (166)
Q Consensus 102 ~~~~~~i~IGD~~~Di~~a~~----~G~~~i~v~~~~~~~~---------~~~~~~~~~~~~~~l~~~l~~~ 160 (166)
.+..++++||++..|+..|-+ .|-..+.+..|..... ......-++..+.++.+.+..+
T Consensus 63 hDshniiviG~~~~dm~~A~n~l~~~gGG~vvv~~g~v~a~lpLpi~GlmS~~~~eev~~~~~~l~~~~~~l 134 (171)
T PF13382_consen 63 HDSHNIIVIGTNDEDMALAANRLIEMGGGIVVVDDGEVLAELPLPIAGLMSDLPAEEVARQLEELEEALREL 134 (171)
T ss_dssp TTT--EEEEESSHHHHHHHHHHHHHTTSEEEEEETTEEEEEEE-TBTTTBBSS-HHHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHHhCCCEEEEECCEEEEEEeccccceecCCCHHHHHHHHHHHHHHHHHc
Confidence 578999999999999999887 4777777766642211 1223445666666666665543
No 354
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.89 E-value=1.3e+02 Score=22.64 Aligned_cols=92 Identities=12% Similarity=0.019 Sum_probs=51.3
Q ss_pred ccchhHHHHHHHHHHCCCC-EEEEeCCch--------hhHHHHHhh---hcCcccccceEEecCCCCCccCCCCChHHHH
Q psy6288 25 NLAIGALRLINHLHKHNIP-FAIATSSAK--------ESFELKTSR---HKDTLKLFHHVVLGSADPEVKQGKPAPDVFL 92 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~-i~ivS~~~~--------~~~~~~l~~---~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~ 92 (166)
..--|+...++++.+.|+. +=+++.+++ ......+.+ ..++.. ....+.+.. ..+..-|++...+
T Consensus 8 s~~g~~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~Hapy--~iNlas~~~~~r~ 84 (274)
T TIGR00587 8 SAAGGLQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLS-QIVLVHAPY--LINLASPDEEKEE 84 (274)
T ss_pred eccCCHHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCC-cceeccCCe--eeecCCCCHHHHH
Confidence 3446778899999998886 445555554 212222222 123320 001122220 2456667788777
Q ss_pred HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
..++.+. ..+..|...|+..+.+..|.
T Consensus 85 ~sv~~~~---------------~~i~~A~~lga~~vv~H~G~ 111 (274)
T TIGR00587 85 KSLDVLD---------------EELKRCELLGIMLYNFHPGS 111 (274)
T ss_pred HHHHHHH---------------HHHHHHHHcCCCEEEECCCC
Confidence 7777766 45677777777766665554
No 355
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=44.83 E-value=1.5e+02 Score=23.57 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=30.3
Q ss_pred HHHHHHHcCCCCCCCceEEEecCH---hHHHHHHHcCCeEEEecCCCC
Q psy6288 91 FLVAAKRFDEKPQPSKCLVFEDAP---NGVLGAKAAGMSCVMVPDPTV 135 (166)
Q Consensus 91 ~~~~~~~~~~~~~~~~~i~IGD~~---~Di~~a~~~G~~~i~v~~~~~ 135 (166)
+..+++++. |+=++..||+. .-..+|...|++.+.+..|..
T Consensus 85 ~~~~~~~~~----Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG~r 128 (365)
T TIGR03568 85 FSDAFERLK----PDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGGEV 128 (365)
T ss_pred HHHHHHHhC----CCEEEEeCCchHHHHHHHHHHHhCCcEEEEECCcc
Confidence 344555554 89999999986 446677778999998888754
No 356
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=44.59 E-value=37 Score=18.26 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHhhhhhhhcCCccchhHHHHHHHHHHCCCCE
Q psy6288 1 MNISQVLNYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPF 44 (166)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i 44 (166)
|..+++.........+ ..+...........++++..++.||.+
T Consensus 1 MS~~~l~~Fl~~~~~d-~~l~~~l~~~~~~~e~~~lA~~~Gy~f 43 (49)
T PF07862_consen 1 MSIESLKAFLEKVKSD-PELREQLKACQNPEEVVALAREAGYDF 43 (49)
T ss_pred CCHHHHHHHHHHHhcC-HHHHHHHHhcCCHHHHHHHHHHcCCCC
Confidence 6667776666665444 112222223335666777778888864
No 357
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=44.51 E-value=1.2e+02 Score=22.81 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=45.6
Q ss_pred HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccce-EEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEE
Q psy6288 31 LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHH-VVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLV 109 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~-v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~ 109 (166)
.++++...++|++++++.+.. ..+ ..+.+.+.- .| .. +++.. + +.-. ++-.+.+++..+ .....+++
T Consensus 95 ~~ll~~~~~~~~~v~llG~~~-~v~-~~a~~~l~~-~y-~l~i~g~~---~-Gyf~--~~e~~~i~~~I~--~s~~dil~ 162 (243)
T PRK03692 95 EALMARAGKEGTPVFLVGGKP-EVL-AQTEAKLRT-QW-NVNIVGSQ---D-GYFT--PEQRQALFERIH--ASGAKIVT 162 (243)
T ss_pred HHHHHHHHhcCCeEEEECCCH-HHH-HHHHHHHHH-Hh-CCEEEEEe---C-CCCC--HHHHHHHHHHHH--hcCCCEEE
Confidence 345666667899999997665 322 233332211 22 32 23333 2 2222 344566778887 77888999
Q ss_pred EecCH--hHHHHHHH
Q psy6288 110 FEDAP--NGVLGAKA 122 (166)
Q Consensus 110 IGD~~--~Di~~a~~ 122 (166)
||=+. .++-.++.
T Consensus 163 VglG~PkQE~~~~~~ 177 (243)
T PRK03692 163 VAMGSPKQEIFMRDC 177 (243)
T ss_pred EECCCcHHHHHHHHH
Confidence 98764 56655554
No 358
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=44.49 E-value=28 Score=26.32 Aligned_cols=29 Identities=21% Similarity=0.150 Sum_probs=25.3
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKES 54 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~ 54 (166)
-.+.+.++++.+++.|+.+++.||+....
T Consensus 97 q~e~~~~~~~~ake~Gl~~~l~TnG~~~~ 125 (260)
T COG1180 97 QAEFALDLLRAAKERGLHVALDTNGFLPP 125 (260)
T ss_pred hHHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence 47888999999999999999999997543
No 359
>KOG0208|consensus
Probab=44.18 E-value=65 Score=29.46 Aligned_cols=89 Identities=12% Similarity=0.133 Sum_probs=51.1
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCchhhHH-HHHhh--hcCcc---cccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAKESFE-LKTSR--HKDTL---KLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~-~~l~~--~~gl~---~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
=.+..+.++....+|+|++-+-....+... .+..+ +--++ .+.-.++-.. .-|+.+..-..-+.+-
T Consensus 649 P~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLiVmeN------kLK~~T~~VI~eL~~A-- 720 (1140)
T KOG0208|consen 649 PADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLIVMEN------KLKEETKRVIDELNRA-- 720 (1140)
T ss_pred CccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEEEeec------ccccccHHHHHHHHhh--
Confidence 357788899999999998887766544321 01111 00111 1122222222 3444443333333333
Q ss_pred CCCCCceEEEecCH-hHHHHHHHcCC
Q psy6288 101 KPQPSKCLVFEDAP-NGVLGAKAAGM 125 (166)
Q Consensus 101 ~~~~~~~i~IGD~~-~Di~~a~~~G~ 125 (166)
..+.+..-||++ +-+.-|+++|+
T Consensus 721 --nIRtVMcTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 721 --NIRTVMCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred --cceEEEEcCCchheeeehhhcccc
Confidence 366677789999 99999999997
No 360
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=44.17 E-value=84 Score=22.99 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=57.3
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhc-CcccccceEEecCCCC--------CccCCCCChHHHHHH
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK-DTLKLFHHVVLGSADP--------EVKQGKPAPDVFLVA 94 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~-gl~~~fd~v~~~~~~~--------~~~~~Kp~~~~~~~~ 94 (166)
.....|+..+|+.|++-++.+--.+..... .++-+.+ +++. .|.|+-++--- .-...|+.|..++.+
T Consensus 28 ~~y~~GAd~Ll~~Lr~g~~dv~yMpAH~~q---~~FPqtme~L~~-YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~li 103 (254)
T COG5426 28 VTYHEGADPLLKALRGGEYDVTYMPAHDAQ---EKFPQTMEGLDA-YDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLI 103 (254)
T ss_pred eecccCchHHHHHHhCCCcceEEechHHHH---Hhcchhhhhhcc-cceEEEeecCCceeeccccceeecccCccHHHHH
Confidence 566789999999999999988777665422 2222222 4544 47877765000 122367788887776
Q ss_pred HHHcCCCCCCCceEEEecCH--hHHHHH
Q psy6288 95 AKRFDEKPQPSKCLVFEDAP--NGVLGA 120 (166)
Q Consensus 95 ~~~~~~~~~~~~~i~IGD~~--~Di~~a 120 (166)
..--. ...-.+|||--. ..|++-
T Consensus 104 kdyV~---~GGGLLMiGGY~SF~GIe~k 128 (254)
T COG5426 104 KDYVE---NGGGLLMIGGYLSFQGIEGK 128 (254)
T ss_pred HHHHh---cCCcEEEEccEEEEeeeccc
Confidence 66554 566788888743 555543
No 361
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=43.51 E-value=69 Score=22.49 Aligned_cols=70 Identities=17% Similarity=0.154 Sum_probs=40.1
Q ss_pred hHHHHHHHHHcCC---CCCCCceEEEecCHh------H----HHHHHHcCCeEEEecCCCCCcc------cccccchhhC
Q psy6288 88 PDVFLVAAKRFDE---KPQPSKCLVFEDAPN------G----VLGAKAAGMSCVMVPDPTVPKH------RTEAADLVLN 148 (166)
Q Consensus 88 ~~~~~~~~~~~~~---~~~~~~~i~IGD~~~------D----i~~a~~~G~~~i~v~~~~~~~~------~~~~~~~~~~ 148 (166)
...+..+.+.+.. .-.+.-++++-|+.+ + +..+++.|+....|.-|..... ......+..+
T Consensus 91 ~~AL~~a~~~l~~~~~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~~~~~~~~~~ 170 (186)
T cd01480 91 DCALKYATEQLLEGSHQKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGSQNEEPLSRIACDGKSALYRE 170 (186)
T ss_pred HHHHHHHHHHHhccCCCCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCccchHHHHHHHcCCcchhhhc
Confidence 3555555555431 123456788888852 1 3456778998665555542222 1123347888
Q ss_pred Chhhhhhhh
Q psy6288 149 SLEEFKPEL 157 (166)
Q Consensus 149 ~~~~l~~~l 157 (166)
++.++.+.+
T Consensus 171 ~~~~l~~~~ 179 (186)
T cd01480 171 NFAELLWSF 179 (186)
T ss_pred chhhhcccc
Confidence 999888754
No 362
>COG3434 Predicted signal transduction protein containing EAL and modified HD-GYP domains [Signal transduction mechanisms]
Probab=43.31 E-value=32 Score=27.58 Aligned_cols=97 Identities=15% Similarity=0.053 Sum_probs=55.8
Q ss_pred hcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC
Q psy6288 21 LLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE 100 (166)
Q Consensus 21 ~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~ 100 (166)
+..++|.+.....++.|++.||.+++..--..... .+..+-.++|.| .-+ ..+-.....+...++++
T Consensus 91 le~~~pt~~Llsa~k~lk~kGY~laldDF~~~~~~-----~~~~ll~l~diV-kid------~~~~~~dk~~~~~~~l~- 157 (407)
T COG3434 91 LEDCPPTEKLLSAIKELKQKGYLLALDDFIFSNVS-----EWKPLLPLSDIV-KID------FKRVTFDKARLFDRDLG- 157 (407)
T ss_pred cCCCCCCHHHHHHHHHHHhcCceeeecceeeccHH-----HHHhhcchhheE-EEE------eeecCcHHHHHHHHHhh-
Confidence 34678999999999999999999987664332211 112333445443 111 12222333344444454
Q ss_pred CCCCCceEEEec---CHhHHHHHHHcCC---eEEEecCC
Q psy6288 101 KPQPSKCLVFED---APNGVLGAKAAGM---SCVMVPDP 133 (166)
Q Consensus 101 ~~~~~~~i~IGD---~~~Di~~a~~~G~---~~i~v~~~ 133 (166)
+-++.++.- +..+.+-|+++|+ +..+++.+
T Consensus 158 ---~~~~~~LaekVETeeefeqAk~~Gf~lFQGyfFskP 193 (407)
T COG3434 158 ---YINKKFLAEKVETEEEFEQAKKAGFDLFQGYFFSKP 193 (407)
T ss_pred ---hhhhhHHHHhhccHHHHHHHHHhhHHHhcccccCcc
Confidence 333333333 5578999999995 45566544
No 363
>PLN02334 ribulose-phosphate 3-epimerase
Probab=43.15 E-value=1.3e+02 Score=22.03 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCC-chhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCC
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSS-AKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPS 105 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~-~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 105 (166)
.+.....++.+++.|.++++..+. +.......+... |-.+|+- +.+-. +.....+..+..+..+.+--.. ...-
T Consensus 101 ~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~-~~~Dyi~-~~~v~--pg~~~~~~~~~~~~~i~~~~~~-~~~~ 175 (229)
T PLN02334 101 TIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEK-GLVDMVL-VMSVE--PGFGGQSFIPSMMDKVRALRKK-YPEL 175 (229)
T ss_pred chhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhc-cCCCEEE-EEEEe--cCCCccccCHHHHHHHHHHHHh-CCCC
Confidence 345678899999999999999874 222221222221 1023331 11111 0111122234455544332220 1122
Q ss_pred ceEEEec-CHhHHHHHHHcCCeEEEecCCC
Q psy6288 106 KCLVFED-APNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 106 ~~i~IGD-~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
.++.+|- +..++....++|...+.+....
T Consensus 176 ~I~a~GGI~~e~i~~l~~aGad~vvvgsai 205 (229)
T PLN02334 176 DIEVDGGVGPSTIDKAAEAGANVIVAGSAV 205 (229)
T ss_pred cEEEeCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 4667754 7799999999999998887663
No 364
>PLN02389 biotin synthase
Probab=42.81 E-value=1.4e+02 Score=24.04 Aligned_cols=42 Identities=5% Similarity=-0.032 Sum_probs=27.6
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCC-chhhHHHHHhhhcCccccc
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSS-AKESFELKTSRHKDTLKLF 69 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~-~~~~~~~~l~~~~gl~~~f 69 (166)
.++.+.++++.+++.|..+. +|++ ........+.++ |++.+.
T Consensus 151 ~~e~i~eiir~ik~~~l~i~-~s~G~l~~E~l~~LkeA-Gld~~~ 193 (379)
T PLN02389 151 NFNQILEYVKEIRGMGMEVC-CTLGMLEKEQAAQLKEA-GLTAYN 193 (379)
T ss_pred HHHHHHHHHHHHhcCCcEEE-ECCCCCCHHHHHHHHHc-CCCEEE
Confidence 46788889999998777654 5555 333344566554 887654
No 365
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=42.76 E-value=39 Score=24.41 Aligned_cols=30 Identities=3% Similarity=0.046 Sum_probs=24.9
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
--+.+.+.++.+++.|.+++.+|+.....+
T Consensus 121 ~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l 150 (196)
T PRK10886 121 NSRDIVKAVEAAVTRDMTIVALTGYDGGEL 150 (196)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCCCChh
Confidence 467788899999999999999999876643
No 366
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=42.74 E-value=1.2e+02 Score=23.78 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
-|-+..+.+.|+++|++++|+|.+...
T Consensus 51 TP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 51 TPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred hHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 467788999999999999999988754
No 367
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=42.23 E-value=1.4e+02 Score=21.91 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=43.4
Q ss_pred HHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEe
Q psy6288 32 RLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFE 111 (166)
Q Consensus 32 ~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IG 111 (166)
.+++.|++. |+++|+||.-...-........ .....-.+.++. .+ --+..+...+++++....+.-..+||.
T Consensus 32 ~~~~~L~~~-~~~aVI~~Di~t~~Da~~l~~~-~g~~i~~v~TG~---~C---H~da~m~~~ai~~l~~~~~~~Dll~iE 103 (202)
T COG0378 32 KTLRALKDE-YKIAVITGDIYTKEDADRLRKL-PGEPIIGVETGK---GC---HLDASMNLEAIEELVLDFPDLDLLFIE 103 (202)
T ss_pred HHHHHHHhh-CCeEEEeceeechhhHHHHHhC-CCCeeEEeccCC---cc---CCcHHHHHHHHHHHhhcCCcCCEEEEe
Confidence 456677776 9999999996543222322321 222222344443 22 356788888888887322224889887
Q ss_pred cC
Q psy6288 112 DA 113 (166)
Q Consensus 112 D~ 113 (166)
..
T Consensus 104 s~ 105 (202)
T COG0378 104 SV 105 (202)
T ss_pred cC
Confidence 63
No 368
>PRK08005 epimerase; Validated
Probab=42.11 E-value=1.4e+02 Score=21.94 Aligned_cols=103 Identities=8% Similarity=0.038 Sum_probs=61.1
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~ 103 (166)
...-+...++|+.+|+.|.+.+++=|-..+. ..+... ..+.|.|.--...+.....+=-+..++++.+--. .-
T Consensus 89 ~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~--~~i~~~---l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~--~~ 161 (210)
T PRK08005 89 AESVQNPSEILADIRAIGAKAGLALNPATPL--LPYRYL---ALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSRE--HF 161 (210)
T ss_pred ccCccCHHHHHHHHHHcCCcEEEEECCCCCH--HHHHHH---HHhcCEEEEEEecCCCccceecHHHHHHHHHHHH--hc
Confidence 3434567889999999999999988775432 222222 2234544332222233334445777777776443 22
Q ss_pred CCceEEEecCH--hHHHHHHHcCCeEEEecCC
Q psy6288 104 PSKCLVFEDAP--NGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 104 ~~~~i~IGD~~--~Di~~a~~~G~~~i~v~~~ 133 (166)
++.-+-|+-+. ..+....++|...+-++..
T Consensus 162 ~~~~I~VDGGI~~~~i~~l~~aGad~~V~Gsa 193 (210)
T PRK08005 162 PAAECWADGGITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred ccCCEEEECCCCHHHHHHHHHCCCCEEEEChH
Confidence 22236666655 5677788899987776544
No 369
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=41.55 E-value=1.5e+02 Score=22.08 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=63.6
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
+....+...+.|+++++.|.+.+++=|-..+. ..+.. +-+..|.|.--.+.|..+..|=-+..++++.+-.. .
T Consensus 91 H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~--~~i~~---~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~--~ 163 (220)
T COG0036 91 HAEATEHIHRTIQLIKELGVKAGLVLNPATPL--EALEP---VLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRA--M 163 (220)
T ss_pred EeccCcCHHHHHHHHHHcCCeEEEEECCCCCH--HHHHH---HHhhCCEEEEEeECCCCcccccCHHHHHHHHHHHH--H
Confidence 45567889999999999999999998876442 12222 12334655433323334444555677776655443 2
Q ss_pred CC---CceEEEecCH--hHHHHHHHcCCeEEEecCC
Q psy6288 103 QP---SKCLVFEDAP--NGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 103 ~~---~~~i~IGD~~--~Di~~a~~~G~~~i~v~~~ 133 (166)
-. +-.+-|+-+. ..+..+.++|...+-....
T Consensus 164 ~~~~~~~~IeVDGGI~~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 164 IDERLDILIEVDGGINLETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred hcccCCeEEEEeCCcCHHHHHHHHHcCCCEEEEEEE
Confidence 22 3345565555 5677777789887766553
No 370
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=41.51 E-value=31 Score=26.01 Aligned_cols=28 Identities=11% Similarity=0.158 Sum_probs=24.4
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCch
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAK 52 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~ 52 (166)
.-+|+..++++.|++.|+++++......
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 4689999999999999999998887653
No 371
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=41.10 E-value=1.9e+02 Score=23.25 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=52.2
Q ss_pred HHHHHHHHHHCCCCEEEEeCC-chhhHHHHHhhhcCcccccceEEecC-CCC-CccCCCCChHHHHHHHHHcCCCCCCCc
Q psy6288 30 ALRLINHLHKHNIPFAIATSS-AKESFELKTSRHKDTLKLFHHVVLGS-ADP-EVKQGKPAPDVFLVAAKRFDEKPQPSK 106 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~-~~~~~~~~l~~~~gl~~~fd~v~~~~-~~~-~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 106 (166)
+.+.++.+++.++.+.+-.+. ........+.+. |. |.++... ..+ .......++..+....++.+ ++
T Consensus 120 ~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~ea-Gv----d~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~--ip--- 189 (368)
T PRK08649 120 ITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEA-GV----DLFVIQGTVVSAEHVSKEGEPLNLKEFIYELD--VP--- 189 (368)
T ss_pred HHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHC-CC----CEEEEeccchhhhccCCcCCHHHHHHHHHHCC--CC---
Confidence 466788888877666553332 222222344342 44 3333211 000 11122235666777777776 44
Q ss_pred eEEEec--CHhHHHHHHHcCCeEEEecCCC
Q psy6288 107 CLVFED--APNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 107 ~i~IGD--~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
++.|+ +..+...+.++|+..|.+..+.
T Consensus 190 -VIaG~V~t~e~A~~l~~aGAD~V~VG~G~ 218 (368)
T PRK08649 190 -VIVGGCVTYTTALHLMRTGAAGVLVGIGP 218 (368)
T ss_pred -EEEeCCCCHHHHHHHHHcCCCEEEECCCC
Confidence 34467 5577888888999999887654
No 372
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=41.03 E-value=35 Score=27.50 Aligned_cols=42 Identities=21% Similarity=0.213 Sum_probs=28.8
Q ss_pred hHHHHHHHHHc----CCCCCCCceEEEecCH-----hHHHHHHHcCCeEEEecCC
Q psy6288 88 PDVFLVAAKRF----DEKPQPSKCLVFEDAP-----NGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 88 ~~~~~~~~~~~----~~~~~~~~~i~IGD~~-----~Di~~a~~~G~~~i~v~~~ 133 (166)
..+.+..++-+ + +.+++|++|||-- ||.. || .-+.++||+.+
T Consensus 351 s~GV~~lQ~y~~~~~~--i~~~~tLHVGDQF~s~GaNDfk-aR-~a~~t~WIasP 401 (408)
T PF06437_consen 351 SLGVRALQKYFDPEGG--IKPSETLHVGDQFLSAGANDFK-AR-LACTTAWIASP 401 (408)
T ss_pred HHhHHHHHHHHHhccC--CCccceeeehhhhhccCCcchh-hh-hhceeeEecCH
Confidence 56666666667 6 9999999999943 4443 33 33467788766
No 373
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=41.02 E-value=49 Score=21.15 Aligned_cols=32 Identities=13% Similarity=0.048 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHH
Q psy6288 87 APDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKA 122 (166)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~ 122 (166)
+...++++++.+. ..+.|.|||+= .|.+...+
T Consensus 51 K~~~i~~i~~~fP----~~kfiLIGDsgq~DpeiY~~ 83 (100)
T PF09949_consen 51 KRDNIERILRDFP----ERKFILIGDSGQHDPEIYAE 83 (100)
T ss_pred HHHHHHHHHHHCC----CCcEEEEeeCCCcCHHHHHH
Confidence 3555666666665 66777788755 66655443
No 374
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=40.45 E-value=79 Score=21.74 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=38.8
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc----ccccceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288 30 ALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT----LKLFHHVVLGSADPEVKQGKPAPDVFLVAAKR 97 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl----~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~ 97 (166)
..++++.++.+|+.+-++...+...++ +++|+ ..+-..++.+. .+.-.-|.....+.+.++
T Consensus 39 C~~w~~~mk~~Gf~Vk~~~~~d~~alK----~~~gIp~e~~SCHT~VI~Gy---~vEGHVPa~aI~~ll~~~ 103 (149)
T COG3019 39 CDEWAQHMKANGFEVKVVETDDFLALK----RRLGIPYEMQSCHTAVINGY---YVEGHVPAEAIARLLAEK 103 (149)
T ss_pred HHHHHHHHHhCCcEEEEeecCcHHHHH----HhcCCChhhccccEEEEcCE---EEeccCCHHHHHHHHhCC
Confidence 457999999999999999998877553 33555 34445566665 444444444444433333
No 375
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=40.36 E-value=58 Score=24.29 Aligned_cols=43 Identities=14% Similarity=0.084 Sum_probs=27.2
Q ss_pred HHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288 32 RLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS 76 (166)
Q Consensus 32 ~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~ 76 (166)
++++...+.++.++++|+.+...+...+.+ .++- ..|.++++.
T Consensus 26 ~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~-~~l~-~Pd~~I~sv 68 (247)
T PF05116_consen 26 ELLEQQARPEILFVYVTGRSLESVLRLLRE-YNLP-QPDYIITSV 68 (247)
T ss_dssp HHHHHHHCCGEEEEEE-SS-HHHHHHHHHH-CT-E-E-SEEEETT
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHh-CCCC-CCCEEEecC
Confidence 344433367889999999999988766655 4663 468888875
No 376
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=40.34 E-value=28 Score=26.34 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=33.6
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEE
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCV 128 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i 128 (166)
.+.|..-++.+|++.....+-||.|.. +...+|.-.|+.+-
T Consensus 88 QelYL~SL~~lGid~~~hDIRFVEDnWEsPTLGAwGLGWEVW 129 (279)
T cd00733 88 QELYLESLEALGINPKEHDIRFVEDNWESPTLGAWGLGWEVW 129 (279)
T ss_pred HHHHHHHHHHhCCCccccCeeEeecCCCCCcccccccccEEE
Confidence 578999999999444446799999999 88999999887654
No 377
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=40.31 E-value=1.2e+02 Score=22.99 Aligned_cols=81 Identities=7% Similarity=0.014 Sum_probs=46.4
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccc--eEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCce
Q psy6288 30 ALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFH--HVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKC 107 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd--~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 107 (166)
+..+++...+.|.+++++.+.. ..+ ....+. +...+- .+++.. .+.-+|.-+ +.++++.. .....+
T Consensus 97 ~~~Ll~~a~~~~~~vfllGgkp-~V~-~~a~~~--l~~~~p~l~ivg~h----~GYf~~~e~--~~i~~~I~--~s~pdi 164 (253)
T COG1922 97 VEALLKRAAEEGKRVFLLGGKP-GVA-EQAAAK--LRAKYPGLKIVGSH----DGYFDPEEE--EAIVERIA--ASGPDI 164 (253)
T ss_pred HHHHHHHhCccCceEEEecCCH-HHH-HHHHHH--HHHHCCCceEEEec----CCCCChhhH--HHHHHHHH--hcCCCE
Confidence 3445555666789999998886 323 232332 222222 444444 344444444 57777777 677889
Q ss_pred EEEecCH--hHHHHHHH
Q psy6288 108 LVFEDAP--NGVLGAKA 122 (166)
Q Consensus 108 i~IGD~~--~Di~~a~~ 122 (166)
++||=+. ..+-.++.
T Consensus 165 l~VgmG~P~QE~wi~~~ 181 (253)
T COG1922 165 LLVGMGVPRQEIWIARN 181 (253)
T ss_pred EEEeCCCchhHHHHHHh
Confidence 9999866 44444443
No 378
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=40.25 E-value=33 Score=23.01 Aligned_cols=26 Identities=4% Similarity=0.012 Sum_probs=20.0
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATS 49 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~ 49 (166)
.---|.+.+++++.++.|.+++.+|+
T Consensus 113 SG~s~~vi~a~~~Ak~~G~~vIalTg 138 (138)
T PF13580_consen 113 SGNSPNVIEAAEEAKERGMKVIALTG 138 (138)
T ss_dssp SS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 34468888999999999999988885
No 379
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=40.20 E-value=59 Score=19.66 Aligned_cols=38 Identities=11% Similarity=0.068 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc
Q psy6288 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF 69 (166)
Q Consensus 29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f 69 (166)
-+..+.+.++++|..+.+..-+. .+. .+.+..|+.++|
T Consensus 58 ~L~~l~~~~~~~g~~v~i~~~~~--~~~-~~l~~~gl~~~~ 95 (99)
T cd07043 58 VLLGAYKRARAAGGRLVLVNVSP--AVR-RVLELTGLDRLF 95 (99)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCH--HHH-HHHHHhCcceee
Confidence 34456666667787766665543 333 334556777655
No 380
>PRK13936 phosphoheptose isomerase; Provisional
Probab=39.95 E-value=47 Score=23.84 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=24.7
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
.--+.+.++++.+++.|.+++.+|+.....+
T Consensus 122 G~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l 152 (197)
T PRK13936 122 GNSANVIQAIQAAHEREMHVVALTGRDGGKM 152 (197)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 3457788899999999999999998765533
No 381
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=39.51 E-value=1.9e+02 Score=22.81 Aligned_cols=85 Identities=21% Similarity=0.203 Sum_probs=44.7
Q ss_pred chhHHHHHHHHHHC-CCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCC
Q psy6288 27 AIGALRLINHLHKH-NIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPS 105 (166)
Q Consensus 27 ~~g~~~~l~~l~~~-g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 105 (166)
...+.++|+.|.+. ++++++.-.+.. .....+.+. +..+ +.+...+ . ....-|..+++.-.
T Consensus 199 ~~~i~~~l~~L~~~~~~~vi~~~hn~p-~~~~~i~~~--l~~~-~~v~~~~---~-----l~~~~~l~ll~~a~------ 260 (346)
T PF02350_consen 199 LEQILEALKALAERQNVPVIFPLHNNP-RGSDIIIEK--LKKY-DNVRLIE---P-----LGYEEYLSLLKNAD------ 260 (346)
T ss_dssp HHHHHHHHHHHHHHTTEEEEEE--S-H-HHHHHHHHH--HTT--TTEEEE------------HHHHHHHHHHES------
T ss_pred HHHHHHHHHHHHhcCCCcEEEEecCCc-hHHHHHHHH--hccc-CCEEEEC---C-----CCHHHHHHHHhcce------
Confidence 34666778888765 565544444332 232344332 3333 3333333 1 11334455555444
Q ss_pred ceEEEecCHhHHH-HHHHcCCeEEEecC
Q psy6288 106 KCLVFEDAPNGVL-GAKAAGMSCVMVPD 132 (166)
Q Consensus 106 ~~i~IGD~~~Di~-~a~~~G~~~i~v~~ 132 (166)
++||||- .|. -|.-.|.+++-+-.
T Consensus 261 --~vvgdSs-GI~eEa~~lg~P~v~iR~ 285 (346)
T PF02350_consen 261 --LVVGDSS-GIQEEAPSLGKPVVNIRD 285 (346)
T ss_dssp --EEEESSH-HHHHHGGGGT--EEECSS
T ss_pred --EEEEcCc-cHHHHHHHhCCeEEEecC
Confidence 6799999 888 99999999999943
No 382
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=39.16 E-value=1.9e+02 Score=23.82 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHhhhhh-----h--hcCCccch-hHHHHHHHHHHC--CCCEEEEeCCc
Q psy6288 2 NISQVLNYVTHVIFDMDG-----L--LLGYNLAI-GALRLINHLHKH--NIPFAIATSSA 51 (166)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~-g~~~~l~~l~~~--g~~i~ivS~~~ 51 (166)
+.++++..+..+...+.. . ..+..+.+ .+.+.|..+++. |+++.+.||+.
T Consensus 61 tpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~ 120 (442)
T TIGR01290 61 TPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVKLCLSTNGL 120 (442)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCeEEEECCCC
Confidence 455666666655432211 0 12333443 477889999886 89999999996
No 383
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=39.15 E-value=65 Score=20.43 Aligned_cols=34 Identities=6% Similarity=-0.018 Sum_probs=25.0
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHh
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAKESFELKTS 60 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~ 60 (166)
.+.+.++.+++++.|+.++.+|..+.......+.
T Consensus 45 l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~ 78 (124)
T PF00578_consen 45 LPELNELYKKYKDKGVQVIGISTDDPEEIKQFLE 78 (124)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHH
T ss_pred hhHHHHHhhhhccceEEeeecccccccchhhhhh
Confidence 4556677777788899999999988775544443
No 384
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=39.02 E-value=84 Score=23.73 Aligned_cols=50 Identities=12% Similarity=0.060 Sum_probs=36.0
Q ss_pred hhhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 16 DMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 16 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
++--+..-....||=..+=+.|++.|++++|+|..+.......+.+ .|+.
T Consensus 62 Df~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~-~g~G 111 (277)
T PRK00994 62 DFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEE-QGLG 111 (277)
T ss_pred CEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHh-cCCc
Confidence 3333444455678888888999999999999999987766556555 3653
No 385
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=38.88 E-value=1.8e+02 Score=22.34 Aligned_cols=28 Identities=14% Similarity=-0.057 Sum_probs=21.9
Q ss_pred EEEecCHhHHHHHHHcCCeEEEecCCCC
Q psy6288 108 LVFEDAPNGVLGAKAAGMSCVMVPDPTV 135 (166)
Q Consensus 108 i~IGD~~~Di~~a~~~G~~~i~v~~~~~ 135 (166)
++||..---++.|...|.+++.+-.+..
T Consensus 256 l~I~nDSGp~HlA~A~g~p~valfGpt~ 283 (322)
T PRK10964 256 AVVSVDTGLSHLTAALDRPNITLYGPTD 283 (322)
T ss_pred EEEecCCcHHHHHHHhCCCEEEEECCCC
Confidence 5666666669999999999998876643
No 386
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=38.82 E-value=1.7e+02 Score=22.22 Aligned_cols=102 Identities=8% Similarity=0.057 Sum_probs=56.2
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCC------------CCccCCCCCh-HH
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSAD------------PEVKQGKPAP-DV 90 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~------------~~~~~~Kp~~-~~ 90 (166)
+.-.+++.++.+.+++.|-++.+.++...- ..+.+......++-.++..... .-...+-|-. ++
T Consensus 111 ~~~V~d~~ea~~~~~~~~~rVflt~G~~~l---~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~ 187 (257)
T COG2099 111 WIEVADIEEAAEAAKQLGRRVFLTTGRQNL---AHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEED 187 (257)
T ss_pred eEEecCHHHHHHHHhccCCcEEEecCccch---HHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHH
Confidence 344677888888888887667666666522 2333322333444333332100 0011122322 33
Q ss_pred HHHHHHHcCCCCCCCceEEE------ecCHhHHHHHHHcCCeEEEecCC
Q psy6288 91 FLVAAKRFDEKPQPSKCLVF------EDAPNGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 91 ~~~~~~~~~~~~~~~~~i~I------GD~~~Di~~a~~~G~~~i~v~~~ 133 (166)
-...+++++ ++ +++- |-+.-=+.+|++.|++.|.|.++
T Consensus 188 n~all~q~~--id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 188 NKALLEQYR--ID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHHHhC--CC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 445566666 21 2222 33455699999999999999887
No 387
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=38.28 E-value=1.8e+02 Score=22.14 Aligned_cols=105 Identities=11% Similarity=0.034 Sum_probs=55.8
Q ss_pred hhcCCccchhHHHHHHHHHHCCCCEE-EEeCCch-hhHHHHHhhhcCcccccceEEecCCCCCccCCC-CChHHHHHHHH
Q psy6288 20 LLLGYNLAIGALRLINHLHKHNIPFA-IATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGK-PAPDVFLVAAK 96 (166)
Q Consensus 20 ~~~~~~~~~g~~~~l~~l~~~g~~i~-ivS~~~~-~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~K-p~~~~~~~~~~ 96 (166)
.+-...+.+...++++.++++|+..+ ++|.++. +.+ ..+.+ ...=|=++++.. .++-.+ .-+.-+...++
T Consensus 123 viipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri-~~i~~---~a~gFIY~vS~~---GvTG~~~~~~~~~~~~i~ 195 (263)
T CHL00200 123 LIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRI-QKIAR---AAPGCIYLVSTT---GVTGLKTELDKKLKKLIE 195 (263)
T ss_pred EEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHH-HHHHH---hCCCcEEEEcCC---CCCCCCccccHHHHHHHH
Confidence 33345567888889999999988644 4454443 223 22222 222232444433 222222 22333444444
Q ss_pred HcCCCCCCCceEEEecCHh---HHHHHHHcCCeEEEecCC
Q psy6288 97 RFDEKPQPSKCLVFEDAPN---GVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 97 ~~~~~~~~~~~i~IGD~~~---Di~~a~~~G~~~i~v~~~ 133 (166)
+.. -..+.=+.||=+.+ ++....+.|...+.|...
T Consensus 196 ~ir--~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSa 233 (263)
T CHL00200 196 TIK--KMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred HHH--HhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHH
Confidence 444 22334456676654 666677788888888654
No 388
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=38.21 E-value=1.4e+02 Score=21.61 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=55.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC--
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE-- 100 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~-- 100 (166)
+..-.+...++++.+++.|.+.+++=|...+ + ..+.. +-...|.|.--...+..+..+=.+..++++.+--..
T Consensus 87 H~E~~~~~~~~i~~ik~~g~k~GialnP~T~-~-~~~~~---~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~ 161 (201)
T PF00834_consen 87 HAEATEDPKETIKYIKEAGIKAGIALNPETP-V-EELEP---YLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIP 161 (201)
T ss_dssp EGGGTTTHHHHHHHHHHTTSEEEEEE-TTS--G-GGGTT---TGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHH
T ss_pred cccchhCHHHHHHHHHHhCCCEEEEEECCCC-c-hHHHH---HhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHH
Confidence 3455677889999999999999988776543 2 22322 334567653332222222222224455554333220
Q ss_pred CCCCCceEEEecCH--hHHHHHHHcCCeEEEec
Q psy6288 101 KPQPSKCLVFEDAP--NGVLGAKAAGMSCVMVP 131 (166)
Q Consensus 101 ~~~~~~~i~IGD~~--~Di~~a~~~G~~~i~v~ 131 (166)
.....-.+.|+-+. ..+....++|+..+-++
T Consensus 162 ~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~G 194 (201)
T PF00834_consen 162 ENGLDFEIEVDGGINEENIKQLVEAGADIFVAG 194 (201)
T ss_dssp HHTCGSEEEEESSESTTTHHHHHHHT--EEEES
T ss_pred hcCCceEEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 00134556666655 66778888999876654
No 389
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.05 E-value=1.6e+02 Score=21.65 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=50.6
Q ss_pred CEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEecCHh-------
Q psy6288 43 PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPN------- 115 (166)
Q Consensus 43 ~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~------- 115 (166)
.++++|-+-...+...+.+.+|+ ..|.++. .|-....++.+++.+. +-.++++.-|++.
T Consensus 70 ~~amvS~s~DGEliA~~l~kfG~----~~IRGSs-------~Kgg~~Alr~l~k~Lk---~G~~i~itpDgPkGp~~~~~ 135 (214)
T COG2121 70 IYAMVSPSRDGELIARLLEKFGL----RVIRGSS-------NKGGISALRALLKALK---QGKSIAITPDGPKGPVHKIG 135 (214)
T ss_pred EEEEEcCCcCHHHHHHHHHHcCc----eEEeccC-------CcchHHHHHHHHHHHh---CCCcEEEcCCCCCCCceecc
Confidence 35555555444444555565676 4566655 3555778888888886 6788888888776
Q ss_pred --HHHHHHHcCCeEEEecC
Q psy6288 116 --GVLGAKAAGMSCVMVPD 132 (166)
Q Consensus 116 --Di~~a~~~G~~~i~v~~ 132 (166)
=+.-|+..|.+.+.+.-
T Consensus 136 ~Gii~LA~~sg~pi~pv~~ 154 (214)
T COG2121 136 DGIIALAQKSGVPIIPVGV 154 (214)
T ss_pred chhhHhhHhcCCCeEEEEE
Confidence 36778888988776653
No 390
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=37.86 E-value=54 Score=25.74 Aligned_cols=30 Identities=10% Similarity=-0.031 Sum_probs=25.1
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
--+++.++++.++++|.+++.+||.....+
T Consensus 104 eT~e~i~al~~ak~~Ga~~I~IT~~~~S~L 133 (340)
T PRK11382 104 KTEEVIKALELGRACGALTAAFTKRADSPI 133 (340)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence 357788999999999999999999875544
No 391
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=37.74 E-value=1.1e+02 Score=23.14 Aligned_cols=54 Identities=11% Similarity=0.010 Sum_probs=35.4
Q ss_pred HHHhhhhhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc
Q psy6288 12 HVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 12 ~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~ 66 (166)
.+-.++--+..-....||=..+=+.|++.|++.+|+|..+.......+.+ .|+.
T Consensus 57 ~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~-~g~G 110 (276)
T PF01993_consen 57 EWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEE-EGFG 110 (276)
T ss_dssp HH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHH-TT-E
T ss_pred hhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHh-cCCc
Confidence 33344444444556689988999999999999999999886666666655 3653
No 392
>KOG1014|consensus
Probab=37.67 E-value=1.7e+02 Score=22.95 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=13.8
Q ss_pred HHHHHHHCCCCEEEEeCCc
Q psy6288 33 LINHLHKHNIPFAIATSSA 51 (166)
Q Consensus 33 ~l~~l~~~g~~i~ivS~~~ 51 (166)
.-.+|.++|+.++++|.+.
T Consensus 65 yA~eLAkrG~nvvLIsRt~ 83 (312)
T KOG1014|consen 65 YARELAKRGFNVVLISRTQ 83 (312)
T ss_pred HHHHHHHcCCEEEEEeCCH
Confidence 5666777788888887765
No 393
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=37.61 E-value=54 Score=24.68 Aligned_cols=32 Identities=3% Similarity=-0.163 Sum_probs=26.1
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
..-.+.+.++++.++++|.+++.+|++....+
T Consensus 185 sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~l 216 (278)
T PRK11557 185 SGERRELNLAADEALRVGAKVLAITGFTPNAL 216 (278)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEcCCCCCch
Confidence 34467788899999999999999999876644
No 394
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=37.45 E-value=2e+02 Score=22.40 Aligned_cols=45 Identities=18% Similarity=0.167 Sum_probs=32.8
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEEEecCCCCCcc
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH 138 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~~~~~ 138 (166)
..-+..+.++.+ . ++-.+ |+..||....=.|..+++|+.|.+.++
T Consensus 227 s~rL~eiA~~~g--~-~aylI---d~~~ei~~~w~~~~~~VGvTAGAStPd 271 (294)
T COG0761 227 SNRLAEIAKRHG--K-PAYLI---DDAEEIDPEWLKGVKTVGVTAGASTPD 271 (294)
T ss_pred HHHHHHHHHHhC--C-CeEEe---CChHhCCHHHhcCccEEEEecCCCCCH
Confidence 556778888888 4 44444 777888888888888999988854443
No 395
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=37.40 E-value=1.6e+02 Score=21.45 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=33.1
Q ss_pred CCCChHHHHHHHHHcCCCCCCCceEEEec--CHhHHHH-HHHcCCeEEEecCC
Q psy6288 84 GKPAPDVFLVAAKRFDEKPQPSKCLVFED--APNGVLG-AKAAGMSCVMVPDP 133 (166)
Q Consensus 84 ~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD--~~~Di~~-a~~~G~~~i~v~~~ 133 (166)
..++...+..+.+..+ + .++..|+ +..|+.. ..+.|+..+.+.+-
T Consensus 182 ~g~~~~~~~~i~~~~~--i---pvia~GGi~s~~di~~~l~~~gadgV~vg~a 229 (232)
T TIGR03572 182 KGYDLELIKTVSDAVS--I---PVIALGGAGSLDDLVEVALEAGASAVAAASL 229 (232)
T ss_pred CCCCHHHHHHHHhhCC--C---CEEEECCCCCHHHHHHHHHHcCCCEEEEehh
Confidence 3456677777777655 3 3888886 5689998 88899998888653
No 396
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=37.26 E-value=2e+02 Score=22.45 Aligned_cols=27 Identities=15% Similarity=-0.002 Sum_probs=21.8
Q ss_pred EEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 108 LVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 108 i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
++||..---++.|...|.+++.+-.+.
T Consensus 265 l~v~nDSGp~HlAaA~g~P~v~lfGpt 291 (352)
T PRK10422 265 LFIGVDSAPAHIAAAVNTPLICLFGAT 291 (352)
T ss_pred EEEecCCHHHHHHHHcCCCEEEEECCC
Confidence 667777777999999999999887654
No 397
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=37.19 E-value=1.6e+02 Score=22.59 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc
Q psy6288 31 LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT 65 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl 65 (166)
.++++.+++.|+++.+-|-+..+.+. .+.+ +|.
T Consensus 251 ~~~v~~~~~~G~~v~vWTVNd~~~~~-~l~~-~GV 283 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVLNDEEEFE-RAFE-LGA 283 (300)
T ss_pred HHHHHHHHHCCCEEEEeecCCHHHHH-HHHh-cCC
Confidence 47899999999999999988877664 4445 466
No 398
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=36.98 E-value=74 Score=19.85 Aligned_cols=36 Identities=8% Similarity=0.077 Sum_probs=24.0
Q ss_pred HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc
Q psy6288 31 LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF 69 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f 69 (166)
..+.+.++++|.++.++.-+. .+... .+..|+.+.|
T Consensus 61 ~~~~~~~~~~g~~l~l~~~~~--~v~~~-l~~~gl~~~~ 96 (106)
T TIGR02886 61 LGRYKKIKNEGGEVIVCNVSP--AVKRL-FELSGLFKII 96 (106)
T ss_pred HHHHHHHHHcCCEEEEEeCCH--HHHHH-HHHhCCceEE
Confidence 356777888899888777665 33334 4556887776
No 399
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=36.89 E-value=38 Score=21.69 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHCC--CCEEEEeCCchh
Q psy6288 28 IGALRLINHLHKHN--IPFAIATSSAKE 53 (166)
Q Consensus 28 ~g~~~~l~~l~~~g--~~i~ivS~~~~~ 53 (166)
+.+.++++.+++.+ ..+.+.||+...
T Consensus 65 ~~l~~~i~~~~~~~~~~~i~i~TNg~~~ 92 (119)
T PF13394_consen 65 EDLIELIEYLKERGPEIKIRIETNGTLP 92 (119)
T ss_dssp HHHHHHHCTSTT-----EEEEEE-STTH
T ss_pred HHHHHHHHHHHhhCCCceEEEEeCCeec
Confidence 45666666666666 777777777644
No 400
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=36.86 E-value=1.2e+02 Score=21.70 Aligned_cols=41 Identities=12% Similarity=0.300 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCCCCCceEEEecCHhHHHH---HHHcCCeEEEecCCC
Q psy6288 90 VFLVAAKRFDEKPQPSKCLVFEDAPNGVLG---AKAAGMSCVMVPDPT 134 (166)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~---a~~~G~~~i~v~~~~ 134 (166)
.++.+++... ++++++||.|+-..-+ |...|+++|++....
T Consensus 48 ~l~~~i~~~~----~~~~~liGSSlGG~~A~~La~~~~~~avLiNPav 91 (187)
T PF05728_consen 48 QLEQLIEELK----PENVVLIGSSLGGFYATYLAERYGLPAVLINPAV 91 (187)
T ss_pred HHHHHHHhCC----CCCeEEEEEChHHHHHHHHHHHhCCCEEEEcCCC
Confidence 3444444444 5669999999977664 666799999998654
No 401
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=36.73 E-value=1.6e+02 Score=21.05 Aligned_cols=76 Identities=9% Similarity=0.030 Sum_probs=36.8
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc-----cccce----------------EEecCCCCCccCCCCCh
Q psy6288 30 ALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL-----KLFHH----------------VVLGSADPEVKQGKPAP 88 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~-----~~fd~----------------v~~~~~~~~~~~~Kp~~ 88 (166)
+..+.+.+...|+++.+++...... ..+.+..|+. .++.. ++--| +. +.-+.
T Consensus 35 l~~~~~~~~~~g~~v~~~apT~~Aa--~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVD---Ea--smv~~ 107 (196)
T PF13604_consen 35 LKALAEALEAAGKRVIGLAPTNKAA--KELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVD---EA--SMVDS 107 (196)
T ss_dssp HHHHHHHHHHTT--EEEEESSHHHH--HHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEES---SG--GG-BH
T ss_pred HHHHHHHHHhCCCeEEEECCcHHHH--HHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEEe---cc--cccCH
Confidence 3446667777899999998876443 2333432321 11111 11112 11 22235
Q ss_pred HHHHHHHHHcCCCCCCCceEEEecCH
Q psy6288 89 DVFLVAAKRFDEKPQPSKCLVFEDAP 114 (166)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~i~IGD~~ 114 (166)
..+..+++... ....++++|||..
T Consensus 108 ~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 108 RQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp HHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred HHHHHHHHHHH--hcCCEEEEECCcc
Confidence 56667777766 5567888888854
No 402
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=36.58 E-value=72 Score=23.10 Aligned_cols=65 Identities=12% Similarity=0.222 Sum_probs=37.2
Q ss_pred EEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec--CHhHHHHHHHcCCeEEEecC-CCCCcccccccch
Q psy6288 72 VVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED--APNGVLGAKAAGMSCVMVPD-PTVPKHRTEAADL 145 (166)
Q Consensus 72 v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD--~~~Di~~a~~~G~~~i~v~~-~~~~~~~~~~~~~ 145 (166)
++.-+ ......| ..+..+.++.. ... +++++| +..|...|.++|+..|+-+= |++.......||+
T Consensus 67 IIAlD---aT~R~Rp--~~l~~li~~i~--~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t~~~~pD~ 134 (192)
T PF04131_consen 67 IIALD---ATDRPRP--ETLEELIREIK--EKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYTKGDGPDF 134 (192)
T ss_dssp EEEEE----SSSS-S--S-HHHHHHHHH--HCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTSTTSSHHH
T ss_pred EEEEe---cCCCCCC--cCHHHHHHHHH--HhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCCCCCCCCH
Confidence 44444 4444555 55666666655 233 778888 55999999999999998773 4433332244444
No 403
>KOG1605|consensus
Probab=35.96 E-value=4.1 Score=30.95 Aligned_cols=96 Identities=10% Similarity=0.074 Sum_probs=58.7
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc-ccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT-LKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ 103 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl-~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~ 103 (166)
.-+|++.+||....+. +.+++.|.+...-+ ..+...+.- ...+...+--+ .+.. ....|-+-+...+ .+
T Consensus 131 ~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya-~~v~D~LD~~~~i~~~RlyR~---~C~~---~~g~yvKdls~~~--~d 200 (262)
T KOG1605|consen 131 RKRPHVDEFLSRVSKW-YELVLFTASLEVYA-DPLLDILDPDRKIISHRLYRD---SCTL---KDGNYVKDLSVLG--RD 200 (262)
T ss_pred EcCCCHHHHHHHhHHH-HHHHHHHhhhHHHH-HHHHHHccCCCCeeeeeeccc---ceEe---ECCcEEEEcceec--cC
Confidence 4589999999999987 89999998875533 455554332 11121111111 1111 0112222336667 68
Q ss_pred CCceEEEecCHhHHHHHHHcCCeEEEe
Q psy6288 104 PSKCLVFEDAPNGVLGAKAAGMSCVMV 130 (166)
Q Consensus 104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v 130 (166)
-+++++|+|++.-...=-+.|++.-..
T Consensus 201 L~~viIiDNsP~sy~~~p~NgIpI~sw 227 (262)
T KOG1605|consen 201 LSKVIIVDNSPQSYRLQPENGIPIKSW 227 (262)
T ss_pred cccEEEEcCChHHhccCccCCCccccc
Confidence 899999999998777767777765433
No 404
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=35.93 E-value=1.6e+02 Score=20.89 Aligned_cols=81 Identities=7% Similarity=0.009 Sum_probs=43.3
Q ss_pred HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEE
Q psy6288 31 LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVF 110 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~I 110 (166)
.++++...++|++++++.+.+ ..+ ..+.+.+. ..|-...+.+. +... . ++--..+++..+ .....+++|
T Consensus 38 ~~l~~~~~~~~~~vfllG~~~-~v~-~~~~~~l~-~~yP~l~i~g~---~g~f-~--~~~~~~i~~~I~--~s~~dil~V 106 (177)
T TIGR00696 38 EELCQRAGKEKLPIFLYGGKP-DVL-QQLKVKLI-KEYPKLKIVGA---FGPL-E--PEERKAALAKIA--RSGAGIVFV 106 (177)
T ss_pred HHHHHHHHHcCCeEEEECCCH-HHH-HHHHHHHH-HHCCCCEEEEE---CCCC-C--hHHHHHHHHHHH--HcCCCEEEE
Confidence 466777778899999997776 322 23333221 12222222222 1122 2 333345666666 566778888
Q ss_pred ecCH--hHHHHHHH
Q psy6288 111 EDAP--NGVLGAKA 122 (166)
Q Consensus 111 GD~~--~Di~~a~~ 122 (166)
|=+. ..+-..+.
T Consensus 107 glG~PkQE~~~~~~ 120 (177)
T TIGR00696 107 GLGCPKQEIWMRNH 120 (177)
T ss_pred EcCCcHhHHHHHHh
Confidence 8755 45554443
No 405
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=35.89 E-value=1.7e+02 Score=22.63 Aligned_cols=29 Identities=17% Similarity=0.006 Sum_probs=23.8
Q ss_pred CCccchhHHHHHHHHHHC--CCCEEEEeCCc
Q psy6288 23 GYNLAIGALRLINHLHKH--NIPFAIATSSA 51 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~--g~~i~ivS~~~ 51 (166)
+..+++++.++++.+++. +..+.+.||+.
T Consensus 75 EPll~~~l~~li~~i~~~~~~~~i~itTNG~ 105 (331)
T PRK00164 75 EPLLRKDLEDIIAALAALPGIRDLALTTNGY 105 (331)
T ss_pred CCcCccCHHHHHHHHHhcCCCceEEEEcCch
Confidence 566789999999999886 35788899985
No 406
>PF06434 Aconitase_2_N: Aconitate hydratase 2 N-terminus; InterPro: IPR015929 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal region of bacterial aconitase B (AcnB), which consists of both a HEAT-like domain and a 'swivel' domain. HEAT-like domains are usually implicated in protein-protein interactions, while the 'swivel' domain is usually a mobile unit in proteins that carry it. In AcnB, this N-terminal region was shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=35.88 E-value=62 Score=23.49 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=28.0
Q ss_pred ccchhHHHHHHHHHHCCCCEEEE-----eCCchhhHHHHHhhhcCcc
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIA-----TSSAKESFELKTSRHKDTL 66 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~iv-----S~~~~~~~~~~l~~~~gl~ 66 (166)
..+++..+.|+.|+++|++++.+ |++++......++-++|-+
T Consensus 37 ~~~~~~l~~i~~lk~kg~~la~vGdvvGtGSSRKSa~NSvlW~~G~d 83 (204)
T PF06434_consen 37 NRRPGPLEQIEELKEKGHPLAYVGDVVGTGSSRKSATNSVLWHMGED 83 (204)
T ss_dssp S-BTTSHHHHHHHHTTSS-EEEEEEEEEES---THHHHHHHHHHSEE
T ss_pred cccccHHHHHHHHHHcCCcEEEecCccccCcccchhhhhhhhhccCC
Confidence 44678889999999999998765 6778777766666555544
No 407
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=35.86 E-value=2.5e+02 Score=23.07 Aligned_cols=79 Identities=13% Similarity=0.118 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHCCC--------------CEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHH
Q psy6288 28 IGALRLINHLHKHNI--------------PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV 93 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~--------------~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~ 93 (166)
.-..++.++|.++|+ +|+|+|+.+-.... -+.+.+.-..+.-.+.-.+ ..-.+.-.+.-...
T Consensus 102 ~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~aa~~-D~~~~~~~r~p~~~~~~~~---~~vQG~~a~~~i~~ 177 (432)
T TIGR00237 102 LAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGAALA-DILHILKRRDPSLKVVIYP---TLVQGEGAVQSIVE 177 (432)
T ss_pred HHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccHHHH-HHHHHHHhhCCCceEEEec---ccccCccHHHHHHH
Confidence 334445556655554 59999999855543 3333222222212333333 22334444566666
Q ss_pred HHHHcCCCCCCCceEEEe
Q psy6288 94 AAKRFDEKPQPSKCLVFE 111 (166)
Q Consensus 94 ~~~~~~~~~~~~~~i~IG 111 (166)
+++..+. ...-.+++|+
T Consensus 178 al~~~~~-~~~~dviii~ 194 (432)
T TIGR00237 178 SIELANT-KNECDVLIVG 194 (432)
T ss_pred HHHHhhc-CCCCCEEEEe
Confidence 6666662 1224677765
No 408
>PF01976 DUF116: Protein of unknown function DUF116; InterPro: IPR002829 These archaeal and bacterial proteins have no known function. Members of this family contain seven conserved cysteines and may also be an integral membrane protein.
Probab=35.86 E-value=38 Score=23.64 Aligned_cols=24 Identities=21% Similarity=0.012 Sum_probs=19.6
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 30 ALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
+.++++...+.|++++|+|+++..
T Consensus 75 Ig~l~~lae~~g~~v~i~~Ggt~a 98 (158)
T PF01976_consen 75 IGDLKKLAEKYGYKVYIATGGTLA 98 (158)
T ss_pred hhHHHHHHHHcCCEEEEEcChHHH
Confidence 456777778889999999999844
No 409
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=35.62 E-value=1.8e+02 Score=22.31 Aligned_cols=90 Identities=7% Similarity=0.014 Sum_probs=51.2
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCC--------
Q psy6288 30 ALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEK-------- 101 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~-------- 101 (166)
-..+.+.++++|+.+..+.....-. ...+.+-.++---=-.+++.- -...++-....+...+++++++
T Consensus 40 h~~lve~l~~~gv~V~ll~~~~~~P-d~VFt~D~~~v~~~~avl~r~---~~p~R~gE~~~~~~~~~~lgi~i~~~~~~~ 115 (267)
T COG1834 40 HEALVEALEKNGVEVHLLPPIEGLP-DQVFTRDPGLVTGEGAVLARM---GAPERRGEEEAIKETLESLGIPIYPRVEAG 115 (267)
T ss_pred HHHHHHHHHHCCCEEEEcCcccCCC-cceEeccceeEecccEEEecc---CChhhccCHHHHHHHHHHcCCcccccccCC
Confidence 4457888899999999988332111 011111111111111223322 2233444678889999999831
Q ss_pred ---------CCCCceEEEecCH-hHHHHHHHc
Q psy6288 102 ---------PQPSKCLVFEDAP-NGVLGAKAA 123 (166)
Q Consensus 102 ---------~~~~~~i~IGD~~-~Di~~a~~~ 123 (166)
++..++++||.+. ++..+++..
T Consensus 116 ~~eG~GD~l~~~~~~v~iG~s~RTn~egi~~l 147 (267)
T COG1834 116 VFEGAGDVLMDGGDTVYIGYSFRTNLEGIEQL 147 (267)
T ss_pred CccccccEEEeCCcEEEEEeccccchHHHHHH
Confidence 0126788889988 888888773
No 410
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=35.49 E-value=84 Score=24.02 Aligned_cols=68 Identities=12% Similarity=-0.083 Sum_probs=43.9
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcC---CeEEEecCCCCCcccc-cccchhhCChhhhhhhh
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAG---MSCVMVPDPTVPKHRT-EAADLVLNSLEEFKPEL 157 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G---~~~i~v~~~~~~~~~~-~~~~~~~~~~~~l~~~l 157 (166)
...+..++++.+ .+.+-.++.||..+|=.+...+. ..++-+..+.++.... .........+..+...+
T Consensus 184 G~a~~~i~~~~~--~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~~~t~a~~~~~~~~~~~~~l~~~~~~~ 255 (266)
T COG1877 184 GAAIKYIMDELP--FDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVGVGSTQAKFRLAGVYGFLRSLYKLLEAL 255 (266)
T ss_pred HHHHHHHHhcCC--CCCCcceecCCCCccHHHHHhhccCCCceEEecCCcccccccccccHHHHHHHHHHHHHh
Confidence 556667888887 66677999999998877777665 6677676665444422 33344455555554443
No 411
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=35.42 E-value=1.2e+02 Score=23.37 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCCCCCceEE-EecCH--hHHHHHHHcCCeEEEecCCCCC
Q psy6288 89 DVFLVAAKRFDEKPQPSKCLV-FEDAP--NGVLGAKAAGMSCVMVPDPTVP 136 (166)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~i~-IGD~~--~Di~~a~~~G~~~i~v~~~~~~ 136 (166)
.-++.++++++ +.|...+. ||-+. -=+.+|++.|+.+++++-...+
T Consensus 59 ~k~~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q 107 (283)
T COG2230 59 AKLDLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQ 107 (283)
T ss_pred HHHHHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHH
Confidence 45778999999 77755554 99877 6688999999999999876443
No 412
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=35.37 E-value=1.6e+02 Score=24.02 Aligned_cols=88 Identities=15% Similarity=0.134 Sum_probs=47.5
Q ss_pred Cccchh-HHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 24 YNLAIG-ALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 24 ~~~~~g-~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
..++-| ..+.++.+++.|-.+.|||.+-.-... ....+ +-+ .|-.+.|..+++-+.
T Consensus 157 mTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~-WM~~~-~~E------------------NPlye~fD~lLeI~~--- 213 (423)
T TIGR00190 157 MTIHAGVLLEYVERLKRSGRITGIVSRGGAILAA-WMLHH-HKE------------------NPLYKNFDYILEIAK--- 213 (423)
T ss_pred EEEccchhHHHHHHHHhCCCccCeecCcHHHHHH-HHHHc-CCc------------------CchHHHHHHHHHHHH---
Confidence 445555 345777777777677777766533332 22221 222 233444444444332
Q ss_pred CCCceEEEecCHh--------H-------------HHHHHHcCCeEEEecCCC
Q psy6288 103 QPSKCLVFEDAPN--------G-------------VLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 103 ~~~~~i~IGD~~~--------D-------------i~~a~~~G~~~i~v~~~~ 134 (166)
..+=++-.||++. | ..-|++.|++++.=..|-
T Consensus 214 ~yDVtlSLGDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGPGH 266 (423)
T TIGR00190 214 EYDVTLSLGDGLRPGCIADATDRAQISELITLGELVERAREADVQCMVEGPGH 266 (423)
T ss_pred HhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 2333566676542 1 356888999988776663
No 413
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=35.36 E-value=2e+02 Score=21.81 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=47.8
Q ss_pred ccchhHHHHHHHHHHCCCCEEE-EeCCchh-hHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAI-ATSSAKE-SFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~i-vS~~~~~-~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
.+++...++++.+++.|+..+. +|.++.. .+ ..+.+. ..-|=++++..+ ..+.....+......+++.. -
T Consensus 126 Lp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri-~~i~~~---s~gfIY~vs~~G--vTG~~~~~~~~~~~~i~~vk--~ 197 (258)
T PRK13111 126 LPPEEAEELRAAAKKHGLDLIFLVAPTTTDERL-KKIASH---ASGFVYYVSRAG--VTGARSADAADLAELVARLK--A 197 (258)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHH-HHHHHh---CCCcEEEEeCCC--CCCcccCCCccHHHHHHHHH--h
Confidence 4456777888888888877655 6666533 23 222221 221212222210 11111111222222222222 1
Q ss_pred CCCceEEEecCH---hHHHHHHHcCCeEEEecCCC
Q psy6288 103 QPSKCLVFEDAP---NGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 103 ~~~~~i~IGD~~---~Di~~a~~~G~~~i~v~~~~ 134 (166)
-.+--+++|=+. .|+..+.+. ...+.|.+..
T Consensus 198 ~~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSai 231 (258)
T PRK13111 198 HTDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSAL 231 (258)
T ss_pred cCCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHH
Confidence 113445667766 566666654 6777776553
No 414
>PF10113 Fibrillarin_2: Fibrillarin-like archaeal protein; InterPro: IPR016760 Members of this protein family are HmdC, whose gene regularly occurs in the context of genes for HmdA (5,10-methenyltetrahydromethanopterin hydrogenase) and the radical SAM protein HmdB involved in biosynthesis of the HmdA cofactor. Bioinformatics suggests this protein, a homologue of eukaryotic fibrillarin, may be involved in biosynthesis of the guanylyl pyridinol cofactor in HmdA.
Probab=35.34 E-value=1e+02 Score=25.31 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=33.2
Q ss_pred HHHHHHHHHcCCCCCCCceEEEecCHhHHH----HHHHcCCeEEEecCCCC
Q psy6288 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVL----GAKAAGMSCVMVPDPTV 135 (166)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~----~a~~~G~~~i~v~~~~~ 135 (166)
.-...+++++| .-.+-+.+|||+..|+. ++-+.|+....|..|..
T Consensus 209 ~~Va~~Akk~g--kGveaI~~vGDGyddLI~G~~a~id~~vDvfVvEGgPF 257 (505)
T PF10113_consen 209 EEVAELAKKYG--KGVEAIMHVGDGYDDLITGLKACIDMGVDVFVVEGGPF 257 (505)
T ss_pred HHHHHHHHHhC--CCceEEEEecCChHHHHHHHHHHHhcCCcEEEEeCCCc
Confidence 33557889999 88999999999987765 55556777666666643
No 415
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=35.33 E-value=63 Score=24.89 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=25.7
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
.--+.+.+.++.++++|.+++.+|+.....+
T Consensus 100 G~t~~~~~~~~~ak~~g~~vI~iT~~~~s~l 130 (321)
T PRK11543 100 GGAKELDLIIPRLEDKSIALLAMTGKPTSPL 130 (321)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEECCCCChh
Confidence 3457788899999999999999999875544
No 416
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=35.14 E-value=83 Score=24.30 Aligned_cols=51 Identities=22% Similarity=0.287 Sum_probs=40.6
Q ss_pred cCCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHH------cCCeEEEecCCC
Q psy6288 82 KQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKA------AGMSCVMVPDPT 134 (166)
Q Consensus 82 ~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~------~G~~~i~v~~~~ 134 (166)
...-|.++.|...+.++| +..+.+|++=|......+++. +|..-|.|-.|.
T Consensus 69 ~~~lp~~e~fa~~~~~~G--I~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG 125 (285)
T COG2897 69 PHMLPSPEQFAKLLGELG--IRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGG 125 (285)
T ss_pred CCCCCCHHHHHHHHHHcC--CCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCC
Confidence 456778999999999999 888888888777766777665 788877777654
No 417
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=35.10 E-value=80 Score=19.64 Aligned_cols=37 Identities=8% Similarity=0.116 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc
Q psy6288 30 ALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF 69 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f 69 (166)
...+.+.++++|.++.++.-+. .+ ..+.+..|+...|
T Consensus 64 L~~~~~~~~~~~~~~~l~~~~~--~~-~~~l~~~~l~~~~ 100 (108)
T TIGR00377 64 LLGRYKQVRRVGGQLVLVSVSP--RV-ARLLDITGLLRII 100 (108)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH--HH-HHHHHHhChhhee
Confidence 3445666677788777766544 23 2334456777655
No 418
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=35.06 E-value=64 Score=24.51 Aligned_cols=31 Identities=10% Similarity=0.088 Sum_probs=25.6
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
.-.+.+.++++.+++.|.+++.+|+.....+
T Consensus 198 G~t~~~~~~~~~ak~~g~~ii~IT~~~~s~l 228 (292)
T PRK11337 198 GRTSDVIEAVELAKKNGAKIICITNSYHSPI 228 (292)
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 3457788999999999999999999886644
No 419
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.96 E-value=46 Score=25.52 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=23.2
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSS 50 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~ 50 (166)
..-||+..+++++|++.|+++++....
T Consensus 70 ~~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 70 RKLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred hhcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 457899999999999999998887644
No 420
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=34.76 E-value=1.7e+02 Score=20.96 Aligned_cols=34 Identities=18% Similarity=-0.018 Sum_probs=18.8
Q ss_pred HHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288 93 VAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 93 ~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
..+++.+ ..++-.++||-..-.-..|++.|....
T Consensus 157 ~~l~~~~--~~~~v~i~vGG~~~~~~~~~~~gad~~ 190 (197)
T TIGR02370 157 DKLKEEG--YRDSVKFMVGGAPVTQDWADKIGADVY 190 (197)
T ss_pred HHHHHcC--CCCCCEEEEEChhcCHHHHHHhCCcEE
Confidence 3444444 344446777776633456777776543
No 421
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=34.61 E-value=2.1e+02 Score=22.01 Aligned_cols=97 Identities=8% Similarity=0.111 Sum_probs=57.5
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCC---ChHHHHHHHHHcCCCCCCCc
Q psy6288 30 ALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKP---APDVFLVAAKRFDEKPQPSK 106 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp---~~~~~~~~~~~~~~~~~~~~ 106 (166)
++++|+..++.||-+.-+.-...+.++..+..+-..... .|+... ...... -+ -..+....+++.. ++ =
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sP--vIlq~s-~~~~~~-~~~~~~~~~~~~~a~~~~--VP--V 75 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSP--VILAGT-PGTFKH-AGTEYIVALCSAASTTYN--MP--L 75 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCC--EEEEeC-ccHHhh-CCHHHHHHHHHHHHHHCC--CC--E
Confidence 578899999999998888877777765555444322221 222221 001111 11 1234445556665 32 2
Q ss_pred eEEE--ecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 107 CLVF--EDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 107 ~i~I--GD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
+++. |.+..++..|-++||.+|.+..+.
T Consensus 76 alHLDHg~~~e~i~~ai~~GFtSVM~DgS~ 105 (282)
T TIGR01858 76 ALHLDHHESLDDIRQKVHAGVRSAMIDGSH 105 (282)
T ss_pred EEECCCCCCHHHHHHHHHcCCCEEeecCCC
Confidence 3444 335688889999999999998764
No 422
>KOG2900|consensus
Probab=34.51 E-value=1.6e+02 Score=22.50 Aligned_cols=49 Identities=6% Similarity=0.053 Sum_probs=36.2
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEe
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVL 74 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~ 74 (166)
..+..+.+.+.+.+.-|.-+.+--+.......+.+.++ |+..|-+.+=+
T Consensus 151 ~~fk~IlE~ikevr~MgmEvCvTLGMv~~qQAkeLKdA-GLTAYNHNlDT 199 (380)
T KOG2900|consen 151 SAFKRILEMIKEVRDMGMEVCVTLGMVDQQQAKELKDA-GLTAYNHNLDT 199 (380)
T ss_pred hHHHHHHHHHHHHHcCCceeeeeeccccHHHHHHHHhc-cceecccCccc
Confidence 45667778888888889888777777666676788776 89887655433
No 423
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=34.30 E-value=76 Score=18.03 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=19.8
Q ss_pred HHHHHHHHHHCCCCEEEEeCCc
Q psy6288 30 ALRLINHLHKHNIPFAIATSSA 51 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~ 51 (166)
..++++.+++.|+..+.+|...
T Consensus 17 ~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 17 PEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred HHHHHHHHHHcCCCEEEEeeCC
Confidence 5689999999999999999775
No 424
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=34.21 E-value=48 Score=30.24 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=34.2
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCH-hHHHHHHHcCCeEE
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCV 128 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~-~Di~~a~~~G~~~i 128 (166)
.+.|..-++.+|++.....+-||.|.+ +...+|+-.|+.+-
T Consensus 93 q~~yl~sl~~~gi~~~~~dirfved~we~p~lga~glgwevw 134 (1000)
T PRK14908 93 QELYLESLKAIGIDLRDHDIRFVHDDWENPTIGAWGLGWEVW 134 (1000)
T ss_pred HHHHHHHHHHcCCCccccceeEeecCCCCCcccccccccEEE
Confidence 578999999999544557799999999 99999999998653
No 425
>PRK15482 transcriptional regulator MurR; Provisional
Probab=34.06 E-value=65 Score=24.42 Aligned_cols=32 Identities=13% Similarity=-0.008 Sum_probs=26.0
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
..-.+.+.++++.++++|.+++.+|+.....+
T Consensus 192 sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~l 223 (285)
T PRK15482 192 SGSKKEIVLCAEAARKQGATVIAITSLADSPL 223 (285)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 34567788899999999999999999876643
No 426
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=33.80 E-value=2.2e+02 Score=22.00 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=20.9
Q ss_pred EEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 108 LVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 108 i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
++||..---++.|...|.+++.+-.+.
T Consensus 263 l~Vs~DSGp~HlAaA~g~p~v~Lfgpt 289 (344)
T TIGR02201 263 LFIGVDSVPMHMAAALGTPLVALFGPS 289 (344)
T ss_pred EEEecCCHHHHHHHHcCCCEEEEECCC
Confidence 566665666999999999999886553
No 427
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=33.67 E-value=87 Score=23.92 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=27.3
Q ss_pred CccchhHHHHHHHHHHC-CCCEEEEeCCchhhHHHH
Q psy6288 24 YNLAIGALRLINHLHKH-NIPFAIATSSAKESFELK 58 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~-g~~i~ivS~~~~~~~~~~ 58 (166)
..+.+++.++|+.|... .-.++|+|+.+...+...
T Consensus 39 a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~ 74 (266)
T COG1877 39 AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERL 74 (266)
T ss_pred cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHh
Confidence 46778899999999876 335999999997766433
No 428
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=33.55 E-value=1.8e+02 Score=23.25 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=27.8
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR 61 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~ 61 (166)
-+.-..++|+.++++|+++++++....+.....+.+
T Consensus 250 q~~F~e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~ 285 (345)
T PF07611_consen 250 QFFFLEKFLKLAKENGIPVVLWWPKVSPPYEKLYKE 285 (345)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEeccCHHHHHHHHh
Confidence 345566788899999999999999987777555544
No 429
>KOG2599|consensus
Probab=33.55 E-value=52 Score=25.33 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=26.0
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKES 54 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~ 54 (166)
++-.+++.++++.|++.|++.+|+|+.....
T Consensus 163 I~t~eda~~a~~~lhq~~v~~vVITS~~~~~ 193 (308)
T KOG2599|consen 163 IRTEEDAKRAVEKLHQKGVKTVVITSFDLGE 193 (308)
T ss_pred eccHHHHHHHHHHHHHhCCCEEEEEeeeeCC
Confidence 4556788999999999999999999886553
No 430
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=33.25 E-value=90 Score=28.75 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=57.8
Q ss_pred HHHHHHHHHCCCC---EEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCC--CCCCC
Q psy6288 31 LRLINHLHKHNIP---FAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDE--KPQPS 105 (166)
Q Consensus 31 ~~~l~~l~~~g~~---i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~--~~~~~ 105 (166)
.+.|.++|+.|+. ++-+++.+...++... +.+|+...+..|=+|. ..+....+.+|..--...+. ..+..
T Consensus 481 ~~~~~~~k~~g~~d~~~a~~~~~~~~~~~~~~-~~~~~~~~~k~vd~~a----~e~~~~~~~~y~~~~~~~~~~~~~~~~ 555 (1050)
T TIGR01369 481 PELLRRAKKLGFSDAQIARLIGVTEAEVRKLR-KELGIMPVYKRVDTCA----AEFEAQTPYLYSTYEGERDDVPFTDKK 555 (1050)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHH-HHCCCeeEEEeecCCC----CcccCCCCeeEecCCCCCCcccCCCCc
Confidence 4788999998884 6656666655564444 4457877665554433 11111122222222111110 02345
Q ss_pred ceEEEecCHhH--------------HHHHHHcCCeEEEecCC
Q psy6288 106 KCLVFEDAPNG--------------VLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 106 ~~i~IGD~~~D--------------i~~a~~~G~~~i~v~~~ 133 (166)
.++++|-++.. +.++++.|+.++.+...
T Consensus 556 kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~n 597 (1050)
T TIGR01369 556 KVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYN 597 (1050)
T ss_pred eEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecC
Confidence 89999988753 78889999999999764
No 431
>PRK09479 glpX fructose 1,6-bisphosphatase II; Reviewed
Probab=33.24 E-value=2.4e+02 Score=22.20 Aligned_cols=100 Identities=10% Similarity=0.009 Sum_probs=55.6
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP 104 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 104 (166)
.-.|-=.++++++++.|.++-++|.++........... .-.|.+++.. +-|.--...-+++-+| -+-
T Consensus 164 LdRpRH~~lI~eiR~~Gari~Li~DGDVa~ai~~~~~~----s~vD~~~GiG-------GaPEGVlaAaAlkclG--G~m 230 (319)
T PRK09479 164 LDRPRHEELIAEIREAGARVKLISDGDVAGAIATAFPD----TGVDILMGIG-------GAPEGVLAAAALKCLG--GEM 230 (319)
T ss_pred EcCchHHHHHHHHHHcCCeEEEeccccHHHHHHHhcCC----CCeeEEEEcC-------cChHHHHHHHHHHhcC--cee
Confidence 34666778999999999999999999866442222221 2235555544 3344444444555554 111
Q ss_pred CceEEEecCHhHHHHHHHcCC----------------eEEEecCCCCCcc
Q psy6288 105 SKCLVFEDAPNGVLGAKAAGM----------------SCVMVPDPTVPKH 138 (166)
Q Consensus 105 ~~~i~IGD~~~Di~~a~~~G~----------------~~i~v~~~~~~~~ 138 (166)
+--+ +-.+......+.+.|+ .++++.+|.+.-+
T Consensus 231 qgRL-~~~~~~e~~r~~~~Gi~D~~kv~~~~dLv~gddv~F~ATGVTdG~ 279 (319)
T PRK09479 231 QGRL-LPRNEEERARAKKMGITDLDKVLTLDDLVRGDDVIFAATGVTDGD 279 (319)
T ss_pred EEeE-CCCCHHHHHHHHHcCCcChhheeEHHHcccCCCEEEEEeCCCCCC
Confidence 1111 1233444555555555 5667766655443
No 432
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=32.98 E-value=2.4e+02 Score=22.01 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=49.6
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCC
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPS 105 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 105 (166)
+.+...++++.|.+.|++++++.+.........+.+. ...... +. +|..-.-+..++..-.
T Consensus 193 p~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~--~~~~~~--l~---------~k~sL~e~~~li~~a~------ 253 (334)
T COG0859 193 PLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKG--LPNAVI--LA---------GKTSLEELAALIAGAD------ 253 (334)
T ss_pred CHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHh--cCCccc--cC---------CCCCHHHHHHHHhcCC------
Confidence 4567888999999999777776666333232333322 111110 11 2222222222222222
Q ss_pred ceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 106 KCLVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 106 ~~i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
++||....=++.|...|.++|++-.+.
T Consensus 254 --l~I~~DSg~~HlAaA~~~P~I~iyg~t 280 (334)
T COG0859 254 --LVIGNDSGPMHLAAALGTPTIALYGPT 280 (334)
T ss_pred --EEEccCChHHHHHHHcCCCEEEEECCC
Confidence 366666666899999999999887654
No 433
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=32.95 E-value=1.2e+02 Score=24.08 Aligned_cols=59 Identities=10% Similarity=-0.006 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCce
Q psy6288 31 LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKC 107 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 107 (166)
.++++.+++.|+++.+-|-+....+ ..+.+ +|. |.|++-. |+.+.++.+-+-. ++|.+-
T Consensus 213 ~~~v~~~~~~Gl~V~vWTVN~~~~~-~~l~~-~GV----dgIiTD~-----------P~~l~~l~~~~~~-~~~~~~ 271 (351)
T cd08608 213 AQEIRDYSASNLSVNLYTVNEPWLY-SLLWC-SGV----PSVTSDA-----------SHVLRKVPFPLWL-MPPDEY 271 (351)
T ss_pred HHHHHHHHHCCCEEEEEecCCHHHH-HHHHH-CCC----CEEEECC-----------HHHHHHhhhhhhh-CChhhh
Confidence 4689999999999999998886666 34445 365 5555544 5555555555543 556553
No 434
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.80 E-value=1.6e+02 Score=19.89 Aligned_cols=89 Identities=11% Similarity=-0.060 Sum_probs=46.7
Q ss_pred HHHHHHHHHCCCCEEEEeCCc-hhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEE
Q psy6288 31 LRLINHLHKHNIPFAIATSSA-KESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLV 109 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~-~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~ 109 (166)
.-+...|+.+|+.++-+.... .+.+.....+ .-.|.+.-|. ......+...-+...+++.+ . ++-.|+
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~-----~~~d~V~lS~---~~~~~~~~~~~~~~~L~~~~--~-~~~~i~ 89 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVMTSQEEFIDAAIE-----TDADAILVSS---LYGHGEIDCRGLREKCIEAG--L-GDILLY 89 (137)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHH-----cCCCEEEEcC---ccccCHHHHHHHHHHHHhcC--C-CCCeEE
Confidence 334556778899988877654 3333223222 1235555554 22222222222333334444 2 234567
Q ss_pred EecCH--------hHHHHHHHcCCeEEEe
Q psy6288 110 FEDAP--------NGVLGAKAAGMSCVMV 130 (166)
Q Consensus 110 IGD~~--------~Di~~a~~~G~~~i~v 130 (166)
+|-++ .+...+++.|+..++-
T Consensus 90 vGG~~~~~~~~~~~~~~~l~~~G~~~vf~ 118 (137)
T PRK02261 90 VGGNLVVGKHDFEEVEKKFKEMGFDRVFP 118 (137)
T ss_pred EECCCCCCccChHHHHHHHHHcCCCEEEC
Confidence 77664 4567899999866654
No 435
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=32.67 E-value=2.2e+02 Score=21.56 Aligned_cols=39 Identities=8% Similarity=-0.010 Sum_probs=23.4
Q ss_pred hHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCCeEE
Q psy6288 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCV 128 (166)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~~~i 128 (166)
+......++++| ++....+.+.+...-...+...|++.+
T Consensus 99 K~~~k~~l~~~g--Ip~p~~~~~~~~~~~~~~~~~~~~P~i 137 (304)
T PRK01372 99 KLRTKLVWQAAG--LPTPPWIVLTREEDLLAAIDKLGLPLV 137 (304)
T ss_pred HHHHHHHHHHCC--CCCCCEEEEeCcchHHHHHhhcCCCEE
Confidence 445667788888 666666655544333445566777643
No 436
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=32.65 E-value=47 Score=25.89 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=22.6
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSS 50 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~ 50 (166)
..-+|+..++++.|++.|+++++....
T Consensus 67 ~~~FPdp~~mi~~Lh~~G~~~~~~i~P 93 (317)
T cd06594 67 PERYPGLDELIEELKARGIRVLTYINP 93 (317)
T ss_pred hhhCCCHHHHHHHHHHCCCEEEEEecC
Confidence 446899999999999999998876543
No 437
>KOG1154|consensus
Probab=32.39 E-value=1.7e+02 Score=22.23 Aligned_cols=89 Identities=9% Similarity=-0.001 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccc----------cceEEecCCCCCccCCCCChHHHHHHHHH
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKL----------FHHVVLGSADPEVKQGKPAPDVFLVAAKR 97 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~----------fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~ 97 (166)
.-..|.+.+|++.|..+.+||++....-..++....-...- ...+-.+. .++.+ --...|+.....
T Consensus 35 a~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~~l~e~rA~A---AvGQ~-~Lmalye~lF~Q 110 (285)
T KOG1154|consen 35 ASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQSELAEKRACA---AVGQS-GLMALYETLFTQ 110 (285)
T ss_pred HHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCccchhhHHHHH---HhCcc-hHHHHHHHHHHH
Confidence 34567888999999999999999866554444332111111 11111111 11111 124678999999
Q ss_pred cCCCCCCCceEEEecCHhHHHHHHH
Q psy6288 98 FDEKPQPSKCLVFEDAPNGVLGAKA 122 (166)
Q Consensus 98 ~~~~~~~~~~i~IGD~~~Di~~a~~ 122 (166)
|+ +...++++--....|-+.-++
T Consensus 111 y~--~~iAQvLvT~~Di~d~~~r~N 133 (285)
T KOG1154|consen 111 YG--ITIAQVLVTRNDILDEQQRKN 133 (285)
T ss_pred hc--cchheeeecCcchhhHHHHHH
Confidence 99 899999987666655554444
No 438
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=32.38 E-value=2.5e+02 Score=22.14 Aligned_cols=98 Identities=8% Similarity=0.007 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHCC--CCEEEEe-----------CCchhhHHHHHhhhcCcccccce-EEecC--CCCCccCCCCChHH
Q psy6288 27 AIGALRLINHLHKHN--IPFAIAT-----------SSAKESFELKTSRHKDTLKLFHH-VVLGS--ADPEVKQGKPAPDV 90 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g--~~i~ivS-----------~~~~~~~~~~l~~~~gl~~~fd~-v~~~~--~~~~~~~~Kp~~~~ 90 (166)
++.+.++++.+++.. +.+...| +...+.....+.++ |++.+... .-+.. ........|-..+-
T Consensus 111 ~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeA-Gld~~~~~g~E~~~~~v~~~i~~~~~~~~~ 189 (351)
T TIGR03700 111 FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEA-GLDSMPGGGAEIFAEEVRQQICPEKISAER 189 (351)
T ss_pred HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHc-CCCcCCCCcccccCHHHHhhcCCCCCCHHH
Confidence 356778999998863 4444432 22233334566664 88665421 11110 00011112222222
Q ss_pred ---HHHHHHHcCCCCCCCceEEEe------cCHhHHHHHHHcCCeE
Q psy6288 91 ---FLVAAKRFDEKPQPSKCLVFE------DAPNGVLGAKAAGMSC 127 (166)
Q Consensus 91 ---~~~~~~~~~~~~~~~~~i~IG------D~~~Di~~a~~~G~~~ 127 (166)
..+.++++| +.....+++| |...++...++.+..+
T Consensus 190 ~l~~i~~a~~~G--i~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~ 233 (351)
T TIGR03700 190 WLEIHRTAHELG--LKTNATMLYGHIETPAHRVDHMLRLRELQDET 233 (351)
T ss_pred HHHHHHHHHHcC--CCcceEEEeeCCCCHHHHHHHHHHHHHhhHhh
Confidence 345667788 8899999999 7778888888877644
No 439
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=32.05 E-value=2.1e+02 Score=21.15 Aligned_cols=106 Identities=12% Similarity=0.045 Sum_probs=60.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC--C
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD--E 100 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~--~ 100 (166)
+...-+...++|+.+++.|.+.+++=|-..+. ..+... -...|.|.--.+.+..+..|=-+..++++.+--. .
T Consensus 92 H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~--~~i~~~---l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~ 166 (223)
T PRK08745 92 HPEASRHVHRTIQLIKSHGCQAGLVLNPATPV--DILDWV---LPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKID 166 (223)
T ss_pred cccCcccHHHHHHHHHHCCCceeEEeCCCCCH--HHHHHH---HhhcCEEEEEEECCCCCCccccHHHHHHHHHHHHHHH
Confidence 33444567899999999999999998876442 222222 2234544332222223333334555555443221 0
Q ss_pred CCCCCceEEEecCH--hHHHHHHHcCCeEEEecCC
Q psy6288 101 KPQPSKCLVFEDAP--NGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 101 ~~~~~~~i~IGD~~--~Di~~a~~~G~~~i~v~~~ 133 (166)
....+--+-|+-+. ..+....++|...+-+++.
T Consensus 167 ~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 167 ALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred hcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChh
Confidence 01234446666655 6677788899988877655
No 440
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=32.00 E-value=54 Score=25.52 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=22.0
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEe
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIAT 48 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS 48 (166)
+..-||+..+++++|++.|+++++..
T Consensus 61 d~~~FPdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 61 DPERFPDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred ChhhCCCHHHHHHHHHHCCCEEEEEe
Confidence 34568999999999999999987755
No 441
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=31.97 E-value=2e+02 Score=23.63 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=18.6
Q ss_pred Cccchh-HHHHHHHHHHCCCCEEEEeCCc
Q psy6288 24 YNLAIG-ALRLINHLHKHNIPFAIATSSA 51 (166)
Q Consensus 24 ~~~~~g-~~~~l~~l~~~g~~i~ivS~~~ 51 (166)
..++-| ..+.++.+++.+-.+.|||.+-
T Consensus 160 mTiHcGi~~~~~~~~~~~~R~~giVSRGG 188 (431)
T PRK13352 160 MTIHCGVTRETLERLKKSGRIMGIVSRGG 188 (431)
T ss_pred EEEccchhHHHHHHHHhcCCccCeecCCH
Confidence 445555 4567777777777777777665
No 442
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=31.89 E-value=94 Score=21.31 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=28.4
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT 65 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl 65 (166)
-++.++.++=+.|++.|.++.++.+.....+...+ +..+.
T Consensus 50 Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~-~~~~~ 89 (165)
T PF00875_consen 50 FLLESLADLQESLRKLGIPLLVLRGDPEEVLPELA-KEYGA 89 (165)
T ss_dssp HHHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHH-HHHTE
T ss_pred HHHHHHHHHHHHHHhcCcceEEEecchHHHHHHHH-HhcCc
Confidence 35677778888888899999999999866664443 43454
No 443
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=31.88 E-value=59 Score=25.14 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=25.8
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
.--+.+.++++.+++.|.+++.+|++....+
T Consensus 105 G~t~~~~~~~~~ak~~g~~vi~iT~~~~s~l 135 (326)
T PRK10892 105 GESSEILALIPVLKRLHVPLICITGRPESSM 135 (326)
T ss_pred CCCHHHHHHHHHHHHCCCcEEEEECCCCCcc
Confidence 3457888999999999999999999875543
No 444
>PRK02947 hypothetical protein; Provisional
Probab=31.87 E-value=61 Score=24.22 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCc
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSA 51 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~ 51 (166)
+.+.++++.+++.|.+++.+|+..
T Consensus 120 ~~~i~~~~~a~~~g~~vI~iT~~~ 143 (246)
T PRK02947 120 PVPIEMALEAKERGAKVIAVTSLA 143 (246)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCc
No 445
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=31.80 E-value=1.1e+02 Score=22.39 Aligned_cols=13 Identities=8% Similarity=0.281 Sum_probs=9.3
Q ss_pred CCCceEEEecCHh
Q psy6288 103 QPSKCLVFEDAPN 115 (166)
Q Consensus 103 ~~~~~i~IGD~~~ 115 (166)
++++++++|-+.+
T Consensus 129 d~~~lv~lG~t~~ 141 (204)
T PF09861_consen 129 DPEDLVYLGTTSR 141 (204)
T ss_dssp -GGGEEEEEE-TT
T ss_pred CcccceEEeECCC
Confidence 6889999998764
No 446
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=31.61 E-value=2.8e+02 Score=22.47 Aligned_cols=101 Identities=19% Similarity=0.165 Sum_probs=55.9
Q ss_pred CccchhHHHHHHHHHHCCCCEEEE-eCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCC----------------
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIA-TSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKP---------------- 86 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~iv-S~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp---------------- 86 (166)
.+-.+|..++++.|.++|+.+.+- ||...+.+...+.. |... +.+.+.+-+ -...+.|
T Consensus 169 APE~~~~~e~i~~l~~~giivs~GHS~Atye~~~~a~~~--Ga~~-~THlfNaMs--~l~hREPGvvGA~L~~~~~~~ei 243 (380)
T COG1820 169 APELDGTKELIRLLANAGIVVSIGHSNATYEQARAAFEA--GATF-VTHLFNAMS--GLHHREPGVVGAALDNPDVYAEI 243 (380)
T ss_pred CCCCCCCHHHHHHHHhCCeEEEecCccccHHHHHHHHHh--CccE-EEeeccCCC--CCCCCCCcccceeecCCCeEEEE
Confidence 455778899999999999976664 44455555444432 4322 122222210 0111111
Q ss_pred -------ChHHHHHHHHHcCCCCCCCceEEEecCHhH--HHHH-HHcCCeEEEecCC
Q psy6288 87 -------APDVFLVAAKRFDEKPQPSKCLVFEDAPNG--VLGA-KAAGMSCVMVPDP 133 (166)
Q Consensus 87 -------~~~~~~~~~~~~~~~~~~~~~i~IGD~~~D--i~~a-~~~G~~~i~v~~~ 133 (166)
+|..++.+.+--+ +++++.|=|++.- .... ...|-..|.|..+
T Consensus 244 IaDG~HVhP~~~~ia~~~kg----~~~i~LVTDam~a~G~~dg~y~lgg~~V~v~~g 296 (380)
T COG1820 244 IADGVHVHPAAIRLALKAKG----GDKIVLVTDAMAAAGLPDGEYILGGQTVTVADG 296 (380)
T ss_pred EccCcccCHHHHHHHHhccC----CceEEEEEccccccCCCCccEEECCEEEEEECC
Confidence 4666666655544 8899999987741 1111 2245567777666
No 447
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=31.57 E-value=63 Score=24.04 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=25.1
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhh
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKES 54 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~ 54 (166)
.-.+.+.++++.++++|.+++.+|+.....
T Consensus 58 G~t~~~~~~~~~a~~~g~~ii~iT~~~~s~ 87 (268)
T TIGR00393 58 GESLELLNLIPHLKRLSHKIIAFTGSPNSS 87 (268)
T ss_pred CCCHHHHHHHHHHHHcCCcEEEEECCCCCc
Confidence 345788899999999999999999986553
No 448
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=31.49 E-value=58 Score=23.21 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCc
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSA 51 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~ 51 (166)
.-+.++++.+++.|++++|.|+..
T Consensus 110 ~~~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 110 QFLQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHHHhCCeEEEEcCcc
Confidence 345678888898899999999876
No 449
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.40 E-value=98 Score=23.08 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=38.4
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS 76 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~ 76 (166)
.+.+++-..+..|..+++.++.||..+.+.+ ..+++++|.. |+.+.+.+
T Consensus 96 ~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l-~~~k~rmGW~--f~w~Ss~~ 144 (247)
T COG4312 96 FLADHWDGAVAHLEHHDVTLVAVSRAPLEEL-VAYKRRMGWQ--FPWVSSTD 144 (247)
T ss_pred hHHhhhhhhhhhHhhcCceEEEEecCcHHHH-HHHHHhcCCc--ceeEeccC
Confidence 4556666788999999999999999998877 5667778886 66665555
No 450
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=31.36 E-value=2.2e+02 Score=21.09 Aligned_cols=38 Identities=5% Similarity=0.112 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCc
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT 65 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl 65 (166)
..+.++.+.++++++++++............+.+..|+
T Consensus 186 ~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~ 223 (256)
T PF01297_consen 186 KDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGV 223 (256)
T ss_dssp HHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-
T ss_pred HHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCC
Confidence 34556777888889998888877666655666554554
No 451
>PHA01806 hypothetical protein
Probab=31.30 E-value=2.1e+02 Score=20.87 Aligned_cols=60 Identities=13% Similarity=0.025 Sum_probs=41.8
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFD 99 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~ 99 (166)
..+-+++...+..|++.|+.+++|.+.-+..+ +.+ .. .-+|.++.+. .|+-.+.++++++
T Consensus 18 ~~is~~al~v~~~l~~~g~~aYlVGG~VRD~L----lgr-~~-kDiDivt~~~----------~pe~v~~L~~klG 77 (200)
T PHA01806 18 GLIAKALLLRLYSDARHSEGVALAGGAARDLM----HGA-EP-KDIDIALYGM----------DDRQAELLIGCIL 77 (200)
T ss_pred hHcCHHHHHHHHHHHHCCcEEEEECchHHHHH----cCC-CC-CceEEEccCC----------CHHHHHHHHHHhC
Confidence 44567888999999999999999999887743 332 12 2245444322 3667888888877
No 452
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=30.93 E-value=59 Score=26.00 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCc
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSA 51 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~ 51 (166)
.....+.+..|++.|+.+++||++.
T Consensus 30 l~~l~~~ia~L~~~G~eVilVSSGA 54 (369)
T COG0263 30 LEELVRQVAALHKAGHEVVLVSSGA 54 (369)
T ss_pred HHHHHHHHHHHHhCCCEEEEEccch
Confidence 4556678899999999999999885
No 453
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=30.88 E-value=61 Score=25.29 Aligned_cols=27 Identities=7% Similarity=0.080 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
-|-+..+.+.|+++|++++|+|-+...
T Consensus 44 TP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 44 TPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 466777888899999999999977543
No 454
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=30.75 E-value=1.4e+02 Score=18.83 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=27.2
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR 61 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~ 61 (166)
...+.-|..+.++.+++...++++++++..+.....+..
T Consensus 14 agkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~ 52 (99)
T PRK01018 14 TGKVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIEY 52 (99)
T ss_pred cCCEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHH
Confidence 356777888888888877777777777765555555543
No 455
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.65 E-value=62 Score=25.16 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=23.4
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSS 50 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~ 50 (166)
..-||+..++++.|++.|+++.+....
T Consensus 66 ~~~FPdp~~mi~~L~~~G~k~~~~v~P 92 (317)
T cd06598 66 RKAFPDPAGMIADLAKKGVKTIVITEP 92 (317)
T ss_pred cccCCCHHHHHHHHHHcCCcEEEEEcC
Confidence 457899999999999999999887753
No 456
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=30.60 E-value=68 Score=25.95 Aligned_cols=44 Identities=18% Similarity=0.156 Sum_probs=26.6
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccccc
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF 69 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~f 69 (166)
...-+..-|-.|-+.|++++|||........+.-.+..||-+.|
T Consensus 167 ~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a~kY~~RL~GLL~a~ 210 (408)
T PF06437_consen 167 PDNPVIPRIIKLLRRGVKVGIVTAAGYPGAEKYEERLHGLLDAF 210 (408)
T ss_pred CCchHHHHHHHHHhcCCeEEEEeCCCCCChHHHHHHHHHHHHHH
Confidence 34445555666667799999999776555444433333554333
No 457
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=30.59 E-value=40 Score=21.35 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=28.8
Q ss_pred HHHHHHcCCCCCCCceEEE-ecCHhHHHHHHHcCCeEEEecCCCCC
Q psy6288 92 LVAAKRFDEKPQPSKCLVF-EDAPNGVLGAKAAGMSCVMVPDPTVP 136 (166)
Q Consensus 92 ~~~~~~~~~~~~~~~~i~I-GD~~~Di~~a~~~G~~~i~v~~~~~~ 136 (166)
...++.+. +..+|.+ ||+..=+..|-..|+.++.++.+...
T Consensus 32 ~~~~~~~~----~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~ 73 (105)
T PF07085_consen 32 SDFLEYLK----PGDLVITPGDREDIQLAAIEAGIACIILTGGLEP 73 (105)
T ss_dssp HHHHHCHH----TTEEEEEETT-HHHHHHHCCTTECEEEEETT---
T ss_pred HHHHhhcC----CCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCC
Confidence 44455444 5888888 99988888889999998888877543
No 458
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=30.54 E-value=2.3e+02 Score=21.05 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=36.7
Q ss_pred EEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCceEEEec-CHhHHHHHHHcCCeEEEec-CCCCC
Q psy6288 72 VVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFED-APNGVLGAKAAGMSCVMVP-DPTVP 136 (166)
Q Consensus 72 v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD-~~~Di~~a~~~G~~~i~v~-~~~~~ 136 (166)
|+.-+ ......|+- .+..++++.. .+.+.+|-+- +..|...|.++|+..|+-+ .|++.
T Consensus 101 IIA~D---aT~R~RP~~-~~~~~i~~~k---~~~~l~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~ 160 (229)
T COG3010 101 IIAFD---ATDRPRPDG-DLEELIARIK---YPGQLAMADCSTFEEGLNAHKLGFDIIGTTLSGYTG 160 (229)
T ss_pred EEEee---cccCCCCcc-hHHHHHHHhh---cCCcEEEeccCCHHHHHHHHHcCCcEEecccccccC
Confidence 34445 455556665 6666666643 3444554444 3499999999999999776 34443
No 459
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=30.43 E-value=84 Score=24.25 Aligned_cols=29 Identities=3% Similarity=-0.151 Sum_probs=24.9
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
.|.+.+.++.+++.|.+++.+|+++...+
T Consensus 139 T~~vi~al~~Ak~~Ga~tIaIT~~~~s~L 167 (291)
T TIGR00274 139 TPYVIAGLQYARSLGALTISIACNPKSAA 167 (291)
T ss_pred cHHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 57799999999999999999999876543
No 460
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=30.31 E-value=44 Score=23.96 Aligned_cols=29 Identities=3% Similarity=0.078 Sum_probs=19.2
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCch
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAK 52 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~ 52 (166)
..=...+.+.|+.+....++++|+|++.+
T Consensus 49 ~~d~g~i~~~l~n~~~~~v~v~VVTDG~r 77 (182)
T PF00390_consen 49 ISDRGHIEEILRNWPERDVRVIVVTDGER 77 (182)
T ss_dssp GGGETCHHHHHTTSS-SS--EEEEE-SSS
T ss_pred cCChHHHHHHHHhhhccCceEEEEeCchh
Confidence 33455678888888888899999998873
No 461
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.17 E-value=61 Score=25.00 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=23.0
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSS 50 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~ 50 (166)
..-+|+..+++++|++.|+++++....
T Consensus 66 ~~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 66 PTKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred hhhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 356899999999999999998886654
No 462
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=29.92 E-value=72 Score=25.26 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
-|-+..+.+.|+++|++++|+|-+...
T Consensus 72 TP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 72 TPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 466777888899999999999977643
No 463
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=29.83 E-value=85 Score=24.29 Aligned_cols=30 Identities=0% Similarity=-0.125 Sum_probs=25.5
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhH
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESF 55 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~ 55 (166)
--|.+.++++.+++.|.+++.+|+++...+
T Consensus 143 ~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~L 172 (299)
T PRK05441 143 RTPYVIGALEYARERGALTIGISCNPGSPL 172 (299)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 458899999999999999999999876543
No 464
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=29.82 E-value=1.4e+02 Score=18.23 Aligned_cols=37 Identities=14% Similarity=0.261 Sum_probs=25.5
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHh
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTS 60 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~ 60 (166)
..+.-|..+.++.+++...+++++.++..+.....+.
T Consensus 10 gkl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~ 46 (82)
T PRK13602 10 KSIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKVE 46 (82)
T ss_pred CCEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHHH
Confidence 4567788888888887667777777766555555543
No 465
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.64 E-value=62 Score=25.16 Aligned_cols=26 Identities=12% Similarity=0.147 Sum_probs=22.3
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATS 49 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~ 49 (166)
...+|+..+++++|++.|+++.+..+
T Consensus 69 ~~~FPdp~~mi~~L~~~g~k~~~~i~ 94 (317)
T cd06599 69 KDRFPDPAAFVAKFHERGIRLAPNIK 94 (317)
T ss_pred cccCCCHHHHHHHHHHCCCEEEEEeC
Confidence 45789999999999999999987543
No 466
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=29.63 E-value=51 Score=23.65 Aligned_cols=25 Identities=4% Similarity=-0.059 Sum_probs=17.5
Q ss_pred HHHHHHHcCCCCCCCceEEEecCHhHH
Q psy6288 91 FLVAAKRFDEKPQPSKCLVFEDAPNGV 117 (166)
Q Consensus 91 ~~~~~~~~~~~~~~~~~i~IGD~~~Di 117 (166)
.+..+++.. ..+.+++++|||.+.-
T Consensus 21 ~~~~~~~~~--~~~~~iv~lGDSit~g 45 (214)
T cd01820 21 HERFVAEAK--QKEPDVVFIGDSITQN 45 (214)
T ss_pred HHHHHHHhh--cCCCCEEEECchHhhh
Confidence 344555555 5678999999999653
No 467
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=29.62 E-value=84 Score=23.21 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=24.3
Q ss_pred ccchhHHHHHHHHHHC-CCCEEEEeCCchhhH
Q psy6288 25 NLAIGALRLINHLHKH-NIPFAIATSSAKESF 55 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~-g~~i~ivS~~~~~~~ 55 (166)
.+.|++.++|+.|.+. +..++|+|+.+...+
T Consensus 25 ~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~~ 56 (244)
T TIGR00685 25 VVSDRLLTILQKLAARPHNAIWIISGRKFLEK 56 (244)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCChhhc
Confidence 3568999999999776 567899999975543
No 468
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=29.59 E-value=3e+02 Score=22.20 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=49.1
Q ss_pred CCCEEEEeCCchhhH----HHHHhhhc---Ccc-cccceEEecCCCCCccCCCCChHHHHHHH---HHcCCCCC-CCceE
Q psy6288 41 NIPFAIATSSAKESF----ELKTSRHK---DTL-KLFHHVVLGSADPEVKQGKPAPDVFLVAA---KRFDEKPQ-PSKCL 108 (166)
Q Consensus 41 g~~i~ivS~~~~~~~----~~~l~~~~---gl~-~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~---~~~~~~~~-~~~~i 108 (166)
+-++.|+|+...... ...+.+.+ |+. ..|+.++... .....||.++....+. .+.+ .+ .+-++
T Consensus 42 ~~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~---~ge~~k~~~~~v~~i~~~~~~~~--~dr~d~II 116 (389)
T PRK06203 42 PKKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVP---GGEAAKNDPALVEALHAAINRHG--IDRHSYVL 116 (389)
T ss_pred CCeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEcc---CCccCCCcHHHHHHHHHHHHHcC--CCCCceEE
Confidence 468899997653321 12232221 331 1255554444 4456788755555544 4445 43 34677
Q ss_pred EEecCH-hHHHHHHH----cCCeEEEecC
Q psy6288 109 VFEDAP-NGVLGAKA----AGMSCVMVPD 132 (166)
Q Consensus 109 ~IGD~~-~Di~~a~~----~G~~~i~v~~ 132 (166)
-||-+. -|+..+-. -|.+.+.|.+
T Consensus 117 aiGGGsv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 117 AIGGGAVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred EeCCcHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 899877 88865553 3777777764
No 469
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=29.47 E-value=86 Score=23.03 Aligned_cols=35 Identities=17% Similarity=0.115 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCccc
Q psy6288 31 LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK 67 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~ 67 (166)
.++++.+++.|+++.+-|-+....+ ..+.+ +|.+.
T Consensus 195 ~~~v~~~~~~Gl~v~vwTVn~~~~~-~~l~~-~GVdg 229 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTINDLKDA-QEYKK-LGVYG 229 (237)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHH-HHHHH-cCCCE
Confidence 4789999999999999998876665 34445 37644
No 470
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=29.39 E-value=2.5e+02 Score=21.14 Aligned_cols=39 Identities=15% Similarity=0.240 Sum_probs=24.3
Q ss_pred HHHHHHHcCCCCCCCceEEEecCH---hHHHHHHHcCCeEEEecCC
Q psy6288 91 FLVAAKRFDEKPQPSKCLVFEDAP---NGVLGAKAAGMSCVMVPDP 133 (166)
Q Consensus 91 ~~~~~~~~~~~~~~~~~i~IGD~~---~Di~~a~~~G~~~i~v~~~ 133 (166)
...+.+.++ ..++++|-... .=+..|++.|+..+++...
T Consensus 129 ~~~a~~i~~----~~~~iIVTq~fHm~RA~~ia~~~Gi~~~~~~a~ 170 (239)
T PRK10834 129 IVRTRKVFD----TNDFIIITQRFHCERALFIALHMGIQAQCYAVP 170 (239)
T ss_pred HHHHHHHhC----CCCEEEECCHHHHHHHHHHHHHcCCceEEEeCC
Confidence 334444444 34567777643 6677788888887777543
No 471
>COG2604 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.34 E-value=1.9e+02 Score=24.82 Aligned_cols=68 Identities=9% Similarity=0.066 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCce
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKC 107 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~ 107 (166)
|-..+++..-+...-+.+|||+++.-.-...+++. -.+. ..|+|+++ ...++.++| +.|+-+
T Consensus 211 ~~~q~lls~~K~~~~~aiIVSaGPSL~Kql~lLK~--y~~k-~~IFcads-------------al~~L~k~G--IkPDyV 272 (594)
T COG2604 211 PSYQELLSKRKNISEPAIIVSAGPSLEKQLPLLKK--YQDK-ATIFCADS-------------ALPILAKHG--IKPDYV 272 (594)
T ss_pred ccHHHHHHHhcCCCCceEEEcCCcChhhccHHHHh--cccc-eEEEECCC-------------cchHHHhcC--CCCCeE
Confidence 33444454444333489999988733211222221 1222 26777771 134667777 677777
Q ss_pred EEEecC
Q psy6288 108 LVFEDA 113 (166)
Q Consensus 108 i~IGD~ 113 (166)
.+++=.
T Consensus 273 c~ld~~ 278 (594)
T COG2604 273 CSLDPD 278 (594)
T ss_pred EEecch
Confidence 766543
No 472
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=29.31 E-value=64 Score=25.44 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=20.8
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCC
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSS 50 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~ 50 (166)
-+|+..++++.|++.|+++.+..+.
T Consensus 83 ~FPdp~~mi~~Lh~~G~kv~l~v~P 107 (340)
T cd06597 83 RWPNPKGMIDELHEQGVKVLLWQIP 107 (340)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEecC
Confidence 4689999999999999999765443
No 473
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=29.27 E-value=2.3e+02 Score=22.97 Aligned_cols=30 Identities=17% Similarity=0.137 Sum_probs=21.4
Q ss_pred CCCCceEEEecC--HhHHHHHHHcCCeEEEec
Q psy6288 102 PQPSKCLVFEDA--PNGVLGAKAAGMSCVMVP 131 (166)
Q Consensus 102 ~~~~~~i~IGD~--~~Di~~a~~~G~~~i~v~ 131 (166)
.++++++|=|.. ..++..|.+.|+.++-+.
T Consensus 94 ~~~~~I~f~g~~ks~~ei~~a~e~gi~~i~vd 125 (394)
T COG0019 94 FPPERIVFSGPAKSEEEIAFALELGIKLINVD 125 (394)
T ss_pred CChhhEEECCCCCCHHHHHHHHHcCCcEEEeC
Confidence 677777777763 377777777777766664
No 474
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=29.27 E-value=65 Score=24.81 Aligned_cols=26 Identities=4% Similarity=0.041 Sum_probs=22.6
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeC
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATS 49 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~ 49 (166)
..-+|+..+++++|++.|+++++...
T Consensus 62 ~~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 62 PDRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEec
Confidence 45789999999999999999888654
No 475
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=29.08 E-value=2.8e+02 Score=21.98 Aligned_cols=79 Identities=9% Similarity=-0.101 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHCCCCEEEEe-CCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCCCc
Q psy6288 28 IGALRLINHLHKHNIPFAIAT-SSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSK 106 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS-~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~ 106 (166)
|-+.-.|+.|++.|+.=++++ +...+.+...+.+..+......++.... ..-.-..+..+.+.++ . ..-
T Consensus 33 Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~I~y~~e~~-------~lGTag~l~~a~~~l~--~-~~f 102 (358)
T COG1208 33 PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVRITYVVEKE-------PLGTAGALKNALDLLG--G-DDF 102 (358)
T ss_pred cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCCceEEEecCC-------cCccHHHHHHHHHhcC--C-CcE
Confidence 555667899999999866666 4444444444433111111122222222 1224567777888887 3 566
Q ss_pred eEEEecCHhH
Q psy6288 107 CLVFEDAPNG 116 (166)
Q Consensus 107 ~i~IGD~~~D 116 (166)
+++=||..+|
T Consensus 103 ~v~~GDv~~~ 112 (358)
T COG1208 103 LVLNGDVLTD 112 (358)
T ss_pred EEEECCeeec
Confidence 7788998877
No 476
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=28.92 E-value=93 Score=20.33 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=21.6
Q ss_pred CCccchhHHHHHHHHHHCCCC-EEEEeC
Q psy6288 23 GYNLAIGALRLINHLHKHNIP-FAIATS 49 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~-i~ivS~ 49 (166)
...++..+...++.+++.|+. +.++|+
T Consensus 94 ~~~~~~~vv~v~d~~~~aG~~~v~l~t~ 121 (122)
T TIGR02803 94 KTVDYGDLMKVMNLLRQAGYLKIGLVGL 121 (122)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence 345788888999999999984 888775
No 477
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=28.81 E-value=2.8e+02 Score=21.53 Aligned_cols=99 Identities=12% Similarity=0.148 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccC-C--CCChHHHHHHHHHcCCCCCCC
Q psy6288 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQ-G--KPAPDVFLVAAKRFDEKPQPS 105 (166)
Q Consensus 29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~-~--Kp~~~~~~~~~~~~~~~~~~~ 105 (166)
..+++|+..+++||-+.-+--+..+.....+..+-...... .+-.++ ..... + .--..+....+++++ ++.
T Consensus 5 ~~~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~sPv-Iiq~S~--g~~~y~gg~~~~~~~v~~~a~~~~--vPV- 78 (286)
T COG0191 5 SMKELLDKAKENGYAVPAFNINNLETLQAILEAAEEEKSPV-IIQFSE--GAAKYAGGADSLAHMVKALAEKYG--VPV- 78 (286)
T ss_pred cHHHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhCCCE-EEEecc--cHHHHhchHHHHHHHHHHHHHHCC--CCE-
Confidence 34789999999999876665444455533333322222221 121221 01111 1 112345566777777 333
Q ss_pred ceEEE--ecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 106 KCLVF--EDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 106 ~~i~I--GD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
+++. |++..++..|-++|+.++.+....
T Consensus 79 -~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~ 108 (286)
T COG0191 79 -ALHLDHGASFEDCKQAIRAGFSSVMIDGSH 108 (286)
T ss_pred -EEECCCCCCHHHHHHHHhcCCceEEecCCc
Confidence 3333 457899999999999999997654
No 478
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=28.77 E-value=77 Score=21.03 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=18.6
Q ss_pred HHHHHHHHHHCCCCEEEEeCCchh
Q psy6288 30 ALRLINHLHKHNIPFAIATSSAKE 53 (166)
Q Consensus 30 ~~~~l~~l~~~g~~i~ivS~~~~~ 53 (166)
+.++++.|.+.|+.+.+++.....
T Consensus 18 ~~~l~~~l~~~G~~v~v~~~~~~~ 41 (177)
T PF13439_consen 18 VLNLARALAKRGHEVTVVSPGVKD 41 (177)
T ss_dssp HHHHHHHHHHTT-EEEEEESS-TT
T ss_pred HHHHHHHHHHCCCEEEEEEcCCCc
Confidence 457888999999999999988655
No 479
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=28.77 E-value=2.3e+02 Score=20.45 Aligned_cols=110 Identities=19% Similarity=0.123 Sum_probs=58.8
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh---hcCcccccceEEecC------------------------
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR---HKDTLKLFHHVVLGS------------------------ 76 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~---~~gl~~~fd~v~~~~------------------------ 76 (166)
.+|.+ +..+|.+|.+.|....|+|.+.....+..-.. ...+..-++...+..
T Consensus 64 ~~P~~-~H~~l~~l~~~~~~~~iiTqNiD~L~~~ag~~~~~v~~lHG~~~~~~C~~C~~~~~~~~~~~~~~~p~C~~C~~ 142 (222)
T cd00296 64 AKPNP-AHRALAELERKGKLKRIITQNVDGLHERAGSRRNRVIELHGSLDRVRCTSCGKEYPRDEVLEREKPPRCPKCGG 142 (222)
T ss_pred CCCCH-HHHHHHHHHHcCCCceEEecChHHHHHHhCCCcCcEEEecCCCCccEECCCCCCcchhhhhhccCCCCCCCCCC
Confidence 34433 57888999998998999998875543322111 011111112222210
Q ss_pred --CCCCccCCCCChH-HHHHHHHHcCCCCCCCceEEEecCHhHHH------HHHHcCCeEEEecCCCCCc
Q psy6288 77 --ADPEVKQGKPAPD-VFLVAAKRFDEKPQPSKCLVFEDAPNGVL------GAKAAGMSCVMVPDPTVPK 137 (166)
Q Consensus 77 --~~~~~~~~Kp~~~-~~~~~~~~~~~~~~~~~~i~IGD~~~Di~------~a~~~G~~~i~v~~~~~~~ 137 (166)
...-+......+. .+..+++.+. ..+-+++||-|..+.. .+++.|.+.+.|.......
T Consensus 143 ~l~p~v~~fge~~~~~~~~~~~~~~~---~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~ 209 (222)
T cd00296 143 LLRPDVVDFGEALPKEWFDRALEALL---EADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPA 209 (222)
T ss_pred cccCceEECCCCCCHHHHHHHHHHHh---cCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCC
Confidence 0000111111233 3566666665 4788999999886633 3445678888887765433
No 480
>PF11181 YflT: Heat induced stress protein YflT
Probab=28.75 E-value=98 Score=19.60 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHCCCC---EEEEeCCc
Q psy6288 28 IGALRLINHLHKHNIP---FAIATSSA 51 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~---i~ivS~~~ 51 (166)
..+...++.|+.+||. +.|+|...
T Consensus 10 ~E~~~~I~~L~~~Gy~~ddI~Vva~d~ 36 (103)
T PF11181_consen 10 EEALSAIEELKAQGYSEDDIYVVAKDK 36 (103)
T ss_pred HHHHHHHHHHHHcCCCcccEEEEEcCc
Confidence 4567889999999995 99999654
No 481
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=28.68 E-value=2.8e+02 Score=21.47 Aligned_cols=98 Identities=7% Similarity=0.080 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCC---hHHHHHHHHHcCCCCCCC
Q psy6288 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA---PDVFLVAAKRFDEKPQPS 105 (166)
Q Consensus 29 g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~---~~~~~~~~~~~~~~~~~~ 105 (166)
.++++|+..++.||-+.-+.-...+.++..+..+-.... ..|+... . .....-+. ..+....+++.+ + .
T Consensus 5 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~s--PvIlq~s-~-~~~~~~~~~~~~~~~~~~a~~~~--V--P 76 (286)
T PRK12738 5 STKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRS--PVILAGT-P-GTFKHIALEEIYALCSAYSTTYN--M--P 76 (286)
T ss_pred cHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCC--CEEEEcC-c-chhhhCCHHHHHHHHHHHHHHCC--C--C
Confidence 467889999999998888887777766555544322222 1222221 0 11111111 233444555555 3 2
Q ss_pred ceEEEec--CHhHHHHHHHcCCeEEEecCCC
Q psy6288 106 KCLVFED--APNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 106 ~~i~IGD--~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
=+++.+- +...+..|-++|+.+|.+....
T Consensus 77 ValHLDHg~~~e~i~~ai~~GFtSVM~DgS~ 107 (286)
T PRK12738 77 LALHLDHHESLDDIRRKVHAGVRSAMIDGSH 107 (286)
T ss_pred EEEECCCCCCHHHHHHHHHcCCCeEeecCCC
Confidence 2344432 4577888888999999998664
No 482
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=28.58 E-value=1.7e+02 Score=23.78 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=59.9
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCCC
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQP 104 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~ 104 (166)
.-.|++..++..+.+- +++++.|.+...... .+...++-...|....-.. .+.-+... |.+-+.+.+ .+.
T Consensus 252 ~kRp~l~~fl~~ls~~-~~l~~ft~s~~~y~~-~v~d~l~~~k~~~~~lfr~-----sc~~~~G~-~ikDis~i~--r~l 321 (390)
T COG5190 252 SKRPELDYFLGKLSKI-HELVYFTASVKRYAD-PVLDILDSDKVFSHRLFRE-----SCVSYLGV-YIKDISKIG--RSL 321 (390)
T ss_pred cCChHHHHHHhhhhhh-EEEEEEecchhhhcc-hHHHhccccceeehhhhcc-----cceeccCc-hhhhHHhhc--cCC
Confidence 4578999999999887 899999998755553 3556554444332111111 11222333 566777788 889
Q ss_pred CceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 105 SKCLVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 105 ~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
+.+++|..++.-. ..|.....+..++
T Consensus 322 ~~viiId~~p~SY----~~~p~~~i~i~~W 347 (390)
T COG5190 322 DKVIIIDNSPASY----EFHPENAIPIEKW 347 (390)
T ss_pred CceEEeeCChhhh----hhCccceeccCcc
Confidence 9999999999433 5555544444443
No 483
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=28.56 E-value=1.3e+02 Score=19.13 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=21.5
Q ss_pred HHHHHHHHHCCCCEEEEeCCchhhHHHH
Q psy6288 31 LRLINHLHKHNIPFAIATSSAKESFELK 58 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~ 58 (166)
......|++.|+++++|+-++.+.+...
T Consensus 3 ~~~~~~l~~~gv~lv~I~~g~~~~~~~f 30 (115)
T PF13911_consen 3 SRRKPELEAAGVKLVVIGCGSPEGIEKF 30 (115)
T ss_pred hHhHHHHHHcCCeEEEEEcCCHHHHHHH
Confidence 3457788899999999999987555333
No 484
>KOG1359|consensus
Probab=28.50 E-value=67 Score=25.26 Aligned_cols=99 Identities=15% Similarity=0.141 Sum_probs=64.3
Q ss_pred cchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCCC--
Q psy6288 26 LAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQ-- 103 (166)
Q Consensus 26 ~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~-- 103 (166)
.-.|-..+++.|++. -+.+++||...+.+.-...++ +|.++.+. ......+-..+-++..++.-| .+
T Consensus 272 yttgp~~li~llrqr-~RpylFSnslppavV~~a~ka------~dllm~s~--~~i~~~~a~~qrfr~~me~aG--ftIs 340 (417)
T KOG1359|consen 272 YTTGPKPLISLLRQR-SRPYLFSNSLPPAVVGMAAKA------YDLLMVSS--KEIQSRQANTQRFREFMEAAG--FTIS 340 (417)
T ss_pred CccCChhHHHHHHhc-CCceeecCCCChhhhhhhHHH------HHHHHhhH--HHHHHHHHHHHHHHHHHHhcC--ceec
Confidence 345566788888886 577888888765432222222 23333222 033444555677888888877 43
Q ss_pred ----CCceEEEecCHhHHHHHHH---cCCeEEEecCCCC
Q psy6288 104 ----PSKCLVFEDAPNGVLGAKA---AGMSCVMVPDPTV 135 (166)
Q Consensus 104 ----~~~~i~IGD~~~Di~~a~~---~G~~~i~v~~~~~ 135 (166)
|=.-+|+||.---.++|.. .|+..+++..+..
T Consensus 341 g~~hPI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvV 379 (417)
T KOG1359|consen 341 GASHPICPVMLGDARLASKMADELLKRGIYVIGFSYPVV 379 (417)
T ss_pred CCCCCccceecccHHHHHHHHHHHHhcCceEEeecCCcC
Confidence 4457999998877788876 5999999988753
No 485
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=28.29 E-value=81 Score=22.42 Aligned_cols=25 Identities=8% Similarity=-0.182 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCCch
Q psy6288 28 IGALRLINHLHKHNIPFAIATSSAK 52 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~~~ 52 (166)
..+.++++++++.|++++|.|+...
T Consensus 113 ~~~~~f~~~v~~~G~~~~iY~~~~~ 137 (191)
T cd06414 113 DIANAFCETIEAAGYYPGIYANLSW 137 (191)
T ss_pred HHHHHHHHHHHHcCCCeEEEecHHH
Confidence 4467889999989999999999874
No 486
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=28.21 E-value=1.1e+02 Score=18.54 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCCCChHHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCC
Q psy6288 83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM 125 (166)
Q Consensus 83 ~~Kp~~~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~ 125 (166)
..-|-...++.++++++ +++..+..|-+.=..|..++.+|-
T Consensus 24 E~aPftAvlkfaAEeFk--v~~~TsAiiTndGvGINP~qtAGn 64 (82)
T cd01766 24 ESTPFTAVLKFAAEEFK--VPAATSAIITNDGIGINPAQTAGN 64 (82)
T ss_pred ccCchHHHHHHHHHhcC--CCccceeEEecCccccChhhcccc
Confidence 34577899999999999 888888777665566777776663
No 487
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=28.20 E-value=2.4e+02 Score=20.49 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=19.0
Q ss_pred CCceEEEecCHhHHHHHHHcCCeEEEecCCC
Q psy6288 104 PSKCLVFEDAPNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 104 ~~~~i~IGD~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
..+.++-.|+- -+..|...|.+++.+-.+.
T Consensus 183 ~a~~~I~~Dtg-~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 183 RADLVIGNDTG-PMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp TSSEEEEESSH-HHHHHHHTT--EEEEESSS
T ss_pred cCCEEEecCCh-HHHHHHHHhCCEEEEecCC
Confidence 33445555554 4999999999999886553
No 488
>KOG3111|consensus
Probab=27.99 E-value=2.5e+02 Score=20.65 Aligned_cols=101 Identities=11% Similarity=0.191 Sum_probs=57.4
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCccCCCCChHHHHH---HHHHcC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV---AAKRFD 99 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~---~~~~~~ 99 (166)
+...-++..+++++++++|.++++.=+.-.+ + ..+... ....|.+.--...+..+-.|=-+++..+ +.+++.
T Consensus 94 H~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~-V-e~~~~~---~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp 168 (224)
T KOG3111|consen 94 HYEATQKPAELVEKIREKGMKVGLALKPGTP-V-EDLEPL---AEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYP 168 (224)
T ss_pred EEeeccCHHHHHHHHHHcCCeeeEEeCCCCc-H-HHHHHh---hccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCC
Confidence 4556677899999999999999998766433 2 222222 2234543332211122222222333322 333443
Q ss_pred CCCCCCceEE-Eec--CHhHHHHHHHcCCeEEEecCCC
Q psy6288 100 EKPQPSKCLV-FED--APNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 100 ~~~~~~~~i~-IGD--~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
+.+. |+- ++..|..+.++|...+...++.
T Consensus 169 ------~l~ievDGGv~~~ti~~~a~AGAN~iVaGsav 200 (224)
T KOG3111|consen 169 ------NLDIEVDGGVGPSTIDKAAEAGANMIVAGSAV 200 (224)
T ss_pred ------CceEEecCCcCcchHHHHHHcCCCEEEeccee
Confidence 2222 322 5588999999999998887764
No 489
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=27.88 E-value=64 Score=17.40 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=13.6
Q ss_pred chhHHHHHHHHHHCCCCE
Q psy6288 27 AIGALRLINHLHKHNIPF 44 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i 44 (166)
.+.+.++++.|+++|+.+
T Consensus 18 I~~~~~~l~~l~~~g~~i 35 (48)
T PF11848_consen 18 ISEVKPLLDRLQQAGFRI 35 (48)
T ss_pred hhhHHHHHHHHHHcCccc
Confidence 347788888888888754
No 490
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=27.81 E-value=69 Score=25.16 Aligned_cols=27 Identities=4% Similarity=-0.034 Sum_probs=22.9
Q ss_pred CCccchhHHHHHHHHHHCCCCEEEEeC
Q psy6288 23 GYNLAIGALRLINHLHKHNIPFAIATS 49 (166)
Q Consensus 23 ~~~~~~g~~~~l~~l~~~g~~i~ivS~ 49 (166)
+...+|+...+++.|++.|+++.+..+
T Consensus 59 d~~~FPdp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 59 DKKKFPDPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEec
Confidence 345789999999999999999887664
No 491
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=27.78 E-value=3.1e+02 Score=21.72 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=52.7
Q ss_pred hhHHHHH-HHHHHCCCCEEEEeCCchhh-HHHHHhhhc---CcccccceEEecCCCCCccCCCCChHHHHHHHHHcCCCC
Q psy6288 28 IGALRLI-NHLHKHNIPFAIATSSAKES-FELKTSRHK---DTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102 (166)
Q Consensus 28 ~g~~~~l-~~l~~~g~~i~ivS~~~~~~-~~~~l~~~~---gl~~~fd~v~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~ 102 (166)
+|+.+-+ +.+++.|.++.|+|+..... ...++.+.+ |+...|+.+ .+.|..+....+.+.... .
T Consensus 15 ~g~~~~l~~~l~~~g~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~----------~~ep~~~~v~~~~~~~~~-~ 83 (366)
T PRK09423 15 KGALARLGEYLKPLGKRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVF----------NGECSDNEIDRLVAIAEE-N 83 (366)
T ss_pred CCHHHHHHHHHHHcCCEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEe----------CCCCCHHHHHHHHHHHHh-c
Confidence 4444444 44566677888999764221 222322222 332222211 134555666666666542 4
Q ss_pred CCCceEEEecCH-hHHHHHHH--cCCeEEEecC
Q psy6288 103 QPSKCLVFEDAP-NGVLGAKA--AGMSCVMVPD 132 (166)
Q Consensus 103 ~~~~~i~IGD~~-~Di~~a~~--~G~~~i~v~~ 132 (166)
.++-+|-||-+. .|+.-+-. .|.+.+.|.+
T Consensus 84 ~~d~IIavGGGsv~D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 84 GCDVVIGIGGGKTLDTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred CCCEEEEecChHHHHHHHHHHHHcCCCEEEeCC
Confidence 578899999966 77765544 3778777765
No 492
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=27.60 E-value=1.7e+02 Score=18.71 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=32.3
Q ss_pred hhhhcCCccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh
Q psy6288 18 DGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR 61 (166)
Q Consensus 18 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~ 61 (166)
...+......-|..+.++.++.-.-+++|+.++.+...+..+.-
T Consensus 12 ~~avkTGkvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~iey 55 (100)
T COG1911 12 KLAVKTGKVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEY 55 (100)
T ss_pred HHHHhcCCEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHH
Confidence 33444567778999999999987778888887776766666543
No 493
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=27.55 E-value=1.2e+02 Score=19.94 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=25.6
Q ss_pred CccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhh
Q psy6288 24 YNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSR 61 (166)
Q Consensus 24 ~~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~ 61 (166)
+..-+.+.+.++.+.++|.++++-|.+........+.+
T Consensus 74 fT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~ 111 (124)
T PF01113_consen 74 FTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEE 111 (124)
T ss_dssp ES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHH
T ss_pred cCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 44456777889999999999999998876544445544
No 494
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=27.53 E-value=1.1e+02 Score=18.69 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=12.4
Q ss_pred chhHHHHHHHHHHCCCC
Q psy6288 27 AIGALRLINHLHKHNIP 43 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~ 43 (166)
.|.+.++++.|++.|++
T Consensus 44 ~P~i~~~l~~l~~~g~~ 60 (101)
T cd03409 44 GPDTEEAIRELAEEGYQ 60 (101)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57777777777777764
No 495
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=27.39 E-value=2.2e+02 Score=19.99 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHCCCCEEE--EeCCchhhHHHHHhhhcCcccccceEEecCCCCCccC-CCCChHHHHHHHHHcCCCCCCC
Q psy6288 29 GALRLINHLHKHNIPFAI--ATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQ-GKPAPDVFLVAAKRFDEKPQPS 105 (166)
Q Consensus 29 g~~~~l~~l~~~g~~i~i--vS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~~-~Kp~~~~~~~~~~~~~~~~~~~ 105 (166)
...++++.+++.|.++++ ++..+...... ... .+. |.+........... .......++.+.+.. .-
T Consensus 91 ~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~-~~~-~~~----d~v~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~ 159 (202)
T cd04726 91 TIKKAVKAAKKYGKEVQVDLIGVEDPEKRAK-LLK-LGV----DIVILHRGIDAQAAGGWWPEDDLKKVKKLL-----GV 159 (202)
T ss_pred HHHHHHHHHHHcCCeEEEEEeCCCCHHHHHH-HHH-CCC----CEEEEcCcccccccCCCCCHHHHHHHHhhc-----CC
Confidence 357789999999999986 56665444432 222 133 33332210001111 122344444444332 23
Q ss_pred ceEEEec-CHhHHHHHHHcCCeEEEecCCC
Q psy6288 106 KCLVFED-APNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 106 ~~i~IGD-~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
.++..|- +..++..+.++|...+.+....
T Consensus 160 ~i~~~GGI~~~~i~~~~~~Gad~vvvGsai 189 (202)
T cd04726 160 KVAVAGGITPDTLPEFKKAGADIVIVGRAI 189 (202)
T ss_pred CEEEECCcCHHHHHHHHhcCCCEEEEeehh
Confidence 3444433 6688999999999999888764
No 496
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=27.18 E-value=75 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHCCCCEEEEeCC
Q psy6288 28 IGALRLINHLHKHNIPFAIATSS 50 (166)
Q Consensus 28 ~g~~~~l~~l~~~g~~i~ivS~~ 50 (166)
-+...+++.|++.|.++.+++..
T Consensus 110 ~Df~~~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 110 SDFVPLVERLRELGKRVIVVGFE 132 (149)
T ss_pred ccHHHHHHHHHHcCCEEEEEccC
Confidence 35555666666666666666655
No 497
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=26.84 E-value=1.2e+02 Score=22.17 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHCCCCEEEEeCCc
Q psy6288 27 AIGALRLINHLHKHNIPFAIATSSA 51 (166)
Q Consensus 27 ~~g~~~~l~~l~~~g~~i~ivS~~~ 51 (166)
++.+.+.+..+++.|.+++||+++.
T Consensus 19 ~~~~~~~i~~l~~~g~~vvvV~g~g 43 (242)
T PF00696_consen 19 LRELADDIALLSQLGIKVVVVHGGG 43 (242)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred HHHHHHHHHHHHhCCCeEEEEECCh
Confidence 4566677777888999999999986
No 498
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=26.78 E-value=2.7e+02 Score=21.74 Aligned_cols=40 Identities=15% Similarity=0.051 Sum_probs=29.1
Q ss_pred HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecC
Q psy6288 31 LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGS 76 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~ 76 (166)
.++++.+++.|+++.+-|-+....+ .++.+ +|+ |.|++-.
T Consensus 235 ~~~v~~~~~~G~~v~vWTVNd~~~~-~~l~~-~GV----DgIiTD~ 274 (315)
T cd08609 235 ALEIKELRKDNVSVNLWVVNEPWLF-SLLWC-SGV----SSVTTNA 274 (315)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHH-HHHHh-cCC----CEEEcCC
Confidence 4689999999999999998876666 34445 365 5555543
No 499
>PRK08185 hypothetical protein; Provisional
Probab=26.77 E-value=2.9e+02 Score=21.33 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=55.4
Q ss_pred HHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcccccceEEecCCCCCcc-CCCCChHHHHHHHHHcCCCCCCCceEE
Q psy6288 31 LRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVK-QGKPAPDVFLVAAKRFDEKPQPSKCLV 109 (166)
Q Consensus 31 ~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~~~fd~v~~~~~~~~~~-~~Kp~~~~~~~~~~~~~~~~~~~~~i~ 109 (166)
+++|+..++.||-+.-+.-...+.+...+..+-...... .+-.+.+ ... .+.+-..+....+++.. ++ =+++
T Consensus 2 ~~~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPv-Il~~~~~--~~~~~~~~~~~~~~~~a~~~~--vP--V~lH 74 (283)
T PRK08185 2 KELLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPA-IIAIHPN--ELDFLGDNFFAYVRERAKRSP--VP--FVIH 74 (283)
T ss_pred HHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCE-EEEeCcc--hhhhccHHHHHHHHHHHHHCC--CC--EEEE
Confidence 577888888888888888777676655554432222221 1111110 111 12223344555666665 43 3344
Q ss_pred Eec--CHhHHHHHHHcCCeEEEecCCC
Q psy6288 110 FED--APNGVLGAKAAGMSCVMVPDPT 134 (166)
Q Consensus 110 IGD--~~~Di~~a~~~G~~~i~v~~~~ 134 (166)
.+- +..++..|-+.|+.++.+....
T Consensus 75 LDHg~~~e~i~~ai~~Gf~SVM~D~S~ 101 (283)
T PRK08185 75 LDHGATIEDVMRAIRCGFTSVMIDGSL 101 (283)
T ss_pred CCCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence 433 4478888888999998887654
No 500
>KOG0205|consensus
Probab=26.56 E-value=1.2e+02 Score=26.65 Aligned_cols=98 Identities=11% Similarity=-0.045 Sum_probs=64.0
Q ss_pred ccchhHHHHHHHHHHCCCCEEEEeCCchhhHHHHHhhhcCcc--cccc-eEEecCCCC-------------CccCCCCCh
Q psy6288 25 NLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL--KLFH-HVVLGSADP-------------EVKQGKPAP 88 (166)
Q Consensus 25 ~~~~g~~~~l~~l~~~g~~i~ivS~~~~~~~~~~l~~~~gl~--~~fd-~v~~~~~~~-------------~~~~~Kp~~ 88 (166)
+|+.+..+.+.+....|+.+-++|+...... +...+++|.. -|-. ...+.+.++ ..+..--.|
T Consensus 492 pprhdsa~tirral~lGv~VkmitgdqlaI~-keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfp 570 (942)
T KOG0205|consen 492 PPRHDSAETIRRALNLGVNVKMITGDQLAIA-KETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFP 570 (942)
T ss_pred CCccchHHHHHHHHhccceeeeecchHHHHH-HhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCH
Confidence 5677888899999999999999999986644 4444544432 2221 111111000 112222235
Q ss_pred HHHHHHHHHcCCCCCCCceEEEecCHhHHHHHHHcCC
Q psy6288 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGM 125 (166)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~i~IGD~~~Di~~a~~~G~ 125 (166)
+.-..+.++++ -....|-|.||+.+|..+-+++..
T Consensus 571 ehKy~iV~~Lq--~r~hi~gmtgdgvndapaLKkAdi 605 (942)
T KOG0205|consen 571 EHKYEIVKILQ--ERKHIVGMTGDGVNDAPALKKADI 605 (942)
T ss_pred HHHHHHHHHHh--hcCceecccCCCcccchhhccccc
Confidence 55566778888 677889999999999999888754
Done!