RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy6288
(166 letters)
>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain-
containing protein 1A; HDHD1A, haloacid
dehalogenase-like hydrolase domain containing 1A; 2.00A
{Homo sapiens}
Length = 250
Score = 212 bits (542), Expect = 1e-70
Identities = 84/136 (61%), Positives = 99/136 (72%), Gaps = 1/136 (0%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA +LI HL KH IPFA+ATSS SF++KTSRHK+ LF H+VLG DPEV+ GKP P
Sbjct: 116 GAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGD-DPEVQHGKPDP 174
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
D+FL AKRF P KCLVFEDAPNGV A AAGM VMVPD + + T A LVLN
Sbjct: 175 DIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLN 234
Query: 149 SLEEFKPELYGLPPFE 164
SL++F+PEL+GLP +E
Sbjct: 235 SLQDFQPELFGLPSYE 250
Score = 33.9 bits (78), Expect = 0.013
Identities = 12/13 (92%), Positives = 13/13 (100%)
Query: 10 VTHVIFDMDGLLL 22
VTH+IFDMDGLLL
Sbjct: 30 VTHLIFDMDGLLL 42
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 154 bits (392), Expect = 6e-48
Identities = 34/131 (25%), Positives = 65/131 (49%), Gaps = 7/131 (5%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GAL ++ + + + T S + S + + + + + +V +A +VK GKP P
Sbjct: 112 GALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNHNFPGIFQANLMV--TAF-DVKYGKPNP 168
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLV 146
+ +L+A K+ +P++ LV E+AP GV AAG+ + V + + E A+L+
Sbjct: 169 EPYLMALKKGG--FKPNEALVIENAPLGVQAGVAAGIFTIAVNTGPLHDNVLLNEGANLL 226
Query: 147 LNSLEEFKPEL 157
+S+ +F
Sbjct: 227 FHSMPDFNKNW 237
Score = 28.8 bits (65), Expect = 0.81
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 13 VIFDMDGLLL 22
V+FDMDG+L
Sbjct: 26 VLFDMDGVLF 35
>2pib_A Phosphorylated carbohydrates phosphatase TM_1254; 3D-structure,
structural genomics, NPPSFA; HET: MSE GOL; 1.73A
{Thermotoga maritima MSB8} PDB: 3kbb_A*
Length = 216
Score = 145 bits (368), Expect = 1e-44
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
G + + I A+ATS+ + + R D K F +V G +VK GKP P
Sbjct: 88 GVREALEFVKSKRIKLALATSTPQREALERLRRL-DLEKYFDVMVFGD---QVKNGKPDP 143
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP--KHRTEAADLV 146
+++L+ +R P K +VFED+ +GV AK+AG+ + ++ K EA +
Sbjct: 144 EIYLLVLERL--NVVPEKVVVFEDSKSGVEAAKSAGIERIYGVVHSLNDGKALLEAGAVA 201
Query: 147 LNSLEEFKPEL 157
L EE L
Sbjct: 202 LVKPEEILNVL 212
Score = 29.5 bits (67), Expect = 0.38
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 13 VIFDMDGLLL 22
VIFDMDG+L+
Sbjct: 4 VIFDMDGVLM 13
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A
3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A
3quc_A 3qub_A 3qu4_A
Length = 243
Score = 144 bits (365), Expect = 6e-44
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 7/131 (5%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA L+ + + + T S + S + + + +V +A +VK GKP P
Sbjct: 113 GAWELLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMFHKELMV--TAF-DVKYGKPNP 169
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAADLV 146
+ +L+A K+ K + +V E+AP GV AG+ + V + ADL+
Sbjct: 170 EPYLMALKKGGLKAD--EAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLL 227
Query: 147 LNSLEEFKPEL 157
S++
Sbjct: 228 FPSMQTLCDSW 238
Score = 29.2 bits (66), Expect = 0.50
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 10 VTHVIFDMDGLLL 22
+ V+FDMDG+L
Sbjct: 24 LKAVLFDMDGVLF 36
>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.86A {Streptococcus thermophilus lmg 18311}
Length = 214
Score = 139 bits (353), Expect = 2e-42
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
L+++N + + +A+SS K + F V+ S + E K+ KP P
Sbjct: 93 DVLKVLNEVKSQGLEIGLASSSVKADIFRALEEN-RLQGFFDIVL--SGE-EFKESKPNP 148
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
+++L A K+ + + S+ L+ ED+ G+ AA + + D AA +L+
Sbjct: 149 EIYLTALKQLNVQA--SRALIIEDSEKGIAAGVAADVEVWAIRDNEFG-MDQSAAKGLLD 205
Query: 149 SLEEFKPEL 157
SL + +
Sbjct: 206 SLTDVLDLI 214
Score = 29.5 bits (67), Expect = 0.35
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 13 VIFDMDGLLL 22
+IFDMDG+L
Sbjct: 8 IIFDMDGVLF 17
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
S initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Length = 226
Score = 139 bits (353), Expect = 3e-42
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
G + + + +A++S E + D F + SA+ ++ KP P
Sbjct: 98 GVREAVALCKEQGLLVGLASASPLHMLEKVLTMF-DLRDSFDALA--SAE-KLPYSKPHP 153
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH-RTEAADLVL 147
V+L A + P C+ ED+ NG++ +KAA M ++VP P R A++ L
Sbjct: 154 QVYLDCAAKLGVDP--LTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKL 211
Query: 148 NSLEEFKPE 156
+SL E +
Sbjct: 212 SSLTELTAK 220
Score = 29.5 bits (67), Expect = 0.35
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 13 VIFDMDGLLL 22
IFDMDGLL+
Sbjct: 12 AIFDMDGLLI 21
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 133 bits (337), Expect = 7e-40
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
G L+L+ L + I A+A++S F L+ F + + EV KPAP
Sbjct: 95 GILQLLKDLRSNKIKIALASASKNGPFLLERMNLTG---YFDAIADPA---EVAASKPAP 148
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
D+F+ AA P S+ + ED+ G+ K +G + V P +++
Sbjct: 149 DIFIAAAHAVGVAP--SESIGLEDSQAGIQAIKDSGALPIGVGRP----EDLGDDIVIVP 202
Query: 149 SLEEFKPE 156
+ E
Sbjct: 203 DTSHYTLE 210
Score = 28.3 bits (64), Expect = 0.91
Identities = 5/10 (50%), Positives = 9/10 (90%)
Query: 13 VIFDMDGLLL 22
V+FD+DG++
Sbjct: 5 VLFDLDGVIT 14
>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics,
protein structure initiative, NEW research center for
structural genomics; 3.00A {Bacillus subtilis}
Length = 233
Score = 129 bits (327), Expect = 3e-38
Identities = 41/129 (31%), Positives = 56/129 (43%), Gaps = 12/129 (9%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
G RL+ L NI +A+SS L+ + FH +V + + +GKP P
Sbjct: 96 GIGRLLCQLKNENIKIGLASSSRNAPKILR---RLAIIDDFHAIVDPT---TLAKGKPDP 149
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
D+FL AA D P + C EDA G+ K+AGM V V ADLV+
Sbjct: 150 DIFLTAAAMLDVSP--ADCAAIEDAEAGISAIKSAGMFAVGVGQG----QPMLGADLVVR 203
Query: 149 SLEEFKPEL 157
+ EL
Sbjct: 204 QTSDLTLEL 212
Score = 28.4 bits (64), Expect = 0.88
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 10 VTHVIFDMDGLLL 22
+ VIFD+DG++
Sbjct: 2 LKAVIFDLDGVIT 14
>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative
phosphoglucomutase, enzyme function initiative
structural genomics, isomerase; 1.70A {Escherichia coli}
Length = 243
Score = 126 bits (318), Expect = 7e-37
Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 14/128 (10%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
G L+ L I +A+ S L ++ F A ++K KP P
Sbjct: 99 GIRSLLADLRAQQISVGLASVSLNAPTILAALELRE---FFTFCA--DAS-QLKNSKPDP 152
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
++FL A P C+ EDA G+ A+GM V + A L+L
Sbjct: 153 EIFLAACAGLGVPP--QACIGIEDAQAGIDAINASGMRSVGIGAG------LTGAQLLLP 204
Query: 149 SLEEFKPE 156
S E
Sbjct: 205 STESLTWP 212
Score = 28.4 bits (64), Expect = 0.90
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 13 VIFDMDGLLL 22
VIFD+DG++
Sbjct: 8 VIFDLDGVIT 17
>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium
binding site, enzyme function initiativ; 1.60A
{Deinococcus radiodurans} PDB: 4eel_A* 4een_A
Length = 259
Score = 125 bits (316), Expect = 2e-36
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 10/135 (7%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA + L +PFAI ++S + LK +L + + +GKP P
Sbjct: 114 GAAETLRALRAAGVPFAIGSNSERGRLHLKLRVA-GLTELAGEHIYDPSW-VGGRGKPHP 171
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA------ 142
D++ AA++ P +C+V ED+ G AAG + + P P A
Sbjct: 172 DLYTFAAQQLGILP--ERCVVIEDSVTGGAAGLAAGATLWGLLVPGHPHPDGAAALSRLG 229
Query: 143 ADLVLNSLEEFKPEL 157
A VL S E + L
Sbjct: 230 AARVLTSHAELRAAL 244
Score = 28.1 bits (63), Expect = 1.4
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 10 VTHVIFDMDGLLL 22
V+FD+DG+L+
Sbjct: 28 FDAVLFDLDGVLV 40
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom
cerevisiae, structural genomics, PSI-2, protein
structure initiative; 1.60A {Saccharomyces cerevisiae}
Length = 275
Score = 123 bits (310), Expect = 2e-35
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 29 GALRLINHLHKHNI-PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
GA++L N L+ +A+ATS ++ + K +K + + +A+ +VKQGKP
Sbjct: 118 GAVKLCNALNALPKEKWAVATSGTRDMAKKWFDILK--IKRPEYFI--TAN-DVKQGKPH 172
Query: 88 PDVFLVAAKRF-----DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA 142
P+ +L ++ P SK +VFEDAP G+ KAAG V + E
Sbjct: 173 PEPYLKGRNGLGFPINEQDPSKSKVVVFEDAPAGIAAGKAAGCKIVGIATTFDLDFLKEK 232
Query: 143 -ADLVLNSLEEFKPELY 158
D+++ + E + Y
Sbjct: 233 GCDIIVKNHESIRVGEY 249
Score = 28.2 bits (63), Expect = 1.2
Identities = 4/13 (30%), Positives = 9/13 (69%)
Query: 10 VTHVIFDMDGLLL 22
+ +FD+DG ++
Sbjct: 35 INAALFDVDGTII 47
>2fdr_A Conserved hypothetical protein; SAD, structural genomics,
agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A
{Agrobacterium tumefaciens str} SCOP: c.108.1.6
Length = 229
Score = 120 bits (304), Expect = 6e-35
Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 13/135 (9%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
G ++ L P I ++S+ ++ ++ F + + D + KP P
Sbjct: 91 GVKFALSRLT---TPRCICSNSSSHRLDMMLTKV-GLKPYFAPHIYSAKDLGADRVKPKP 146
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVP------KHRTEA 142
D+FL A +F P + +V ED+ +G+ GA+AAGM + + +
Sbjct: 147 DIFLHGAAQFGVSP--DRVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAG 204
Query: 143 ADLVLNSLEEFKPEL 157
A+ V++ +++ P +
Sbjct: 205 AETVISRMQDL-PAV 218
Score = 28.4 bits (64), Expect = 1.1
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 12 HVIFDMDGLLL 22
+IFD DG+L+
Sbjct: 6 LIIFDCDGVLV 16
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 116 bits (293), Expect = 3e-33
Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA+ L+ L K N+ + IATS ++ + ++V + D +V GKP P
Sbjct: 95 GAVELLETLDKENLKWCIATSGGIDTATINLKAL-KLDINKINIV--TRD-DVSYGKPDP 150
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEA--ADLV 146
D+FL AAK+ +CLV DA +L A+ + V + E A V
Sbjct: 151 DLFLAAAKKIGAPID--ECLVIGDAIWDMLAARRCKATGVGLLSGGYDIGELERAGALRV 208
Query: 147 LNSLEEFKPEL 157
+ L
Sbjct: 209 YEDPLDLLNHL 219
Score = 26.1 bits (58), Expect = 5.5
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 13 VIFDMDGLLL 22
IFD+DG L
Sbjct: 9 FIFDLDGTLT 18
>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde
hydrolase like P structural genomics, PSI-2, protein
structure initiative; 2.30A {Oleispira antarctica}
Length = 277
Score = 94.6 bits (235), Expect = 2e-24
Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 4/123 (3%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
G + + L I T K+ V +V +G+P P
Sbjct: 115 GWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYTPASTV---FATDVVRGRPFP 171
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
D+ L A + + C+ +D G+ AGM V V L+
Sbjct: 172 DMALKVALELEVGH-VNGCIKVDDTLPGIEEGLRAGMWTVGVSCSGNEVGLDREDWQALS 230
Query: 149 SLE 151
S E
Sbjct: 231 SDE 233
Score = 26.8 bits (59), Expect = 3.7
Identities = 3/9 (33%), Positives = 4/9 (44%)
Query: 13 VIFDMDGLL 21
+I D G
Sbjct: 17 LILDWAGTT 25
>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1,
uncharacterized protein, structural genomics; 1.44A
{Corynebacterium glutamicum atcc 13032}
Length = 137
Score = 75.2 bits (185), Expect = 4e-18
Identities = 29/146 (19%), Positives = 51/146 (34%), Gaps = 14/146 (9%)
Query: 13 VIFDMDGLLLGYNLAI-GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHH 71
+I D G+L G + L+ K+ + I ++ +T +
Sbjct: 5 LIVDYAGVLDGTDEDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIREL-ETNGVVDK 63
Query: 72 VVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVP 131
V+L E+ KP F AA D + C++ +D+ V GA AG+ V
Sbjct: 64 VLLSG---ELGVEKPEEAAFQAAADAIDLPMR--DCVLVDDSILNVRGAVEAGLVGVYYQ 118
Query: 132 DPTVPKHRTEAADLVLNSLEEFKPEL 157
+ A + + L + E
Sbjct: 119 QF-------DRAVVEIVGLFGLEGEF 137
>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase,
phosphonoacetaldehyde hydrolase, protein binding; HET:
EPE; 1.90A {Pseudomonas syringae PV}
Length = 196
Score = 71.1 bits (174), Expect = 5e-16
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 10/103 (9%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA + L +P A + + D ++ +A G P P
Sbjct: 40 GAQNALKALRDQGMPCAWIDELPEALSTPLAAPVND------WMI--AAP-RPTAGWPQP 90
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVP 131
D +A + C++ P + AG+ + +
Sbjct: 91 DACWMALMALNVSQ-LEGCVLISGDPRLLQSGLNAGLWTIGLA 132
>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily,
phosphonotase, metal binding; 2.30A {Bacillus cereus}
SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A
2iof_K* 1rdf_A 1fez_A
Length = 267
Score = 71.8 bits (176), Expect = 6e-16
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 4/102 (3%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
G +I L + I T +E ++ ++ D V G+P P
Sbjct: 107 GVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQ-GYKPDFLVTPDD--VPAGRPYP 163
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
+ A P + + D + + + AGM V V
Sbjct: 164 WMCYKNAMELGVYP-MNHMIKVGDTVSDMKEGRNAGMWTVGV 204
Score = 25.6 bits (56), Expect = 9.0
Identities = 7/35 (20%), Positives = 10/35 (28%)
Query: 13 VIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIA 47
VIF G + Y + HK +
Sbjct: 9 VIFAWAGTTVDYGCFAPLEVFMEIFHKRGVAITAE 43
>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH,
niaid, SBRI, UW, emerald biostructures, ehrlich
chaffeensis; 1.90A {Ehrlichia chaffeensis}
Length = 231
Score = 66.2 bits (162), Expect = 5e-14
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 7/126 (5%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA+ L++ L ++NI AI ++ HK+ F ++ + + KP+P
Sbjct: 107 GAIELLDTLKENNITMAIVSNKN-GERLRSEIHHKNLTHYFDSII--GSG-DTGTIKPSP 162
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTE--AADLV 146
+ L A + +P D+ + + A AG + + K +
Sbjct: 163 EPVLAALTNINIEPSKE-VFFIGDSISDIQSAIEAGCLPIKYGSTNIIKDILSFKNFYDI 221
Query: 147 LNSLEE 152
N + +
Sbjct: 222 RNFICQ 227
>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
haloacid dehalogenase-like F PSI, protein structure
initiative; 1.40A {Streptococcus pneumoniae} SCOP:
c.108.1.3
Length = 190
Score = 62.6 bits (153), Expect = 6e-13
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 9/103 (8%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
G L+ + + + + L+ F VV ++ + KP P
Sbjct: 86 GVSDLLEDISNQGGRHFLVSH--RNDQVLEILEKTSIAAYFTEVV--TSS-SGFKRKPNP 140
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVP 131
+ L +++ Q S LV D P + +AAG+ +
Sbjct: 141 ESMLYLREKY----QISSGLVIGDRPIDIEAGQAAGLDTHLFT 179
>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of
haloacid dehalogenase-LI superfamily; HET: MSE PG4;
1.66A {Deinococcus radiodurans R1}
Length = 200
Score = 59.7 bits (145), Expect = 7e-12
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 7/105 (6%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
L L L + ++ E + + S+ + KP P
Sbjct: 90 EVLALARDL-GQRYRMYSLNNEGRDLNEYRIRTF-GLGEFLLAFFT-SS--ALGVMKPNP 144
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
++ + +P + ++ +D V A+A GM V D
Sbjct: 145 AMYRLGLTLAQVRP--EEAVMVDDRLQNVQAARAVGMHAVQCVDA 187
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST
genomics, PSI-2, protein structure initiative; 1.80A
{Chlorobaculum tepidum} SCOP: c.108.1.6
Length = 234
Score = 58.9 bits (143), Expect = 2e-11
Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 8/133 (6%)
Query: 29 GALRLINHLHKH-NIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
G L++ L ++ + T + + S K F AD +
Sbjct: 97 GVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLP-GIDHYFPFGA--FAD-DALDRNEL 152
Query: 88 PDVFLVAAKRFDEKP-QPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKH--RTEAAD 144
P + L A+R PS+ ++ D + + A+ + V
Sbjct: 153 PHIALERARRMTGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPG 212
Query: 145 LVLNSLEEFKPEL 157
+ + E L
Sbjct: 213 TLFKNFAETDEVL 225
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A*
3r09_A*
Length = 205
Score = 57.6 bits (140), Expect = 6e-11
Identities = 28/132 (21%), Positives = 42/132 (31%), Gaps = 7/132 (5%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA+ L+ L I T +A T F + D KP P
Sbjct: 74 GAVELVRELAGRGYRLGILTRNA-RELAHVTLEAIGLADCFAEADVLGRD--EAPPKPHP 130
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVLN 148
L A+ +D PS+ ++ D + +AAG V+V P E D
Sbjct: 131 GGLLKLAEAWDV--SPSRMVMVGDYRFDLDCGRAAGTRTVLVNLPD--NPWPELTDWHAR 186
Query: 149 SLEEFKPELYGL 160
+ + L
Sbjct: 187 DCAQLRDLLSAE 198
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 57.9 bits (139), Expect = 9e-11
Identities = 26/159 (16%), Positives = 44/159 (27%), Gaps = 28/159 (17%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSAD---------- 78
L+N L IAT + + + L F + +A
Sbjct: 219 EVKVLLNDLKGAGFELGIATGRP-YTETVVPFENLGLLPYFEADFIATASDVLEAENMYP 277
Query: 79 PEVKQGKPAPDVFLVAAKRFDEKP------------QPSKCLVFEDAPNGVLGAKAAGMS 126
GKP P ++ A + + D+ +L A+ G +
Sbjct: 278 QARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGAT 337
Query: 127 CVMV-----PDPTVPKHRTEAADLVLNSLEEFKPELYGL 160
+ + AD V+N L E + L L
Sbjct: 338 FIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVLDNL 376
>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin,
four-helix bundle, structural GENO NPPSFA; 2.20A
{Pyrococcus horikoshii}
Length = 235
Score = 57.1 bits (138), Expect = 1e-10
Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 8/130 (6%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT--LKLFHHVVLGSADPEVKQGKP 86
G + + + + A+ + + ++ EV KP
Sbjct: 103 GTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLMEFIDKTFFAD---EVLSYKP 159
Query: 87 APDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADL 145
++F F+ +P + L D GA+ GM V + + E
Sbjct: 160 RKEMFEKVLNSFE--VKPEESLHIGDTYAEDYQGARKVGMWAVWINQEGDKVRKLEERGF 217
Query: 146 VLNSLEEFKP 155
+ S+ K
Sbjct: 218 EIPSIANLKD 227
Score = 26.7 bits (59), Expect = 4.1
Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 3/118 (2%)
Query: 7 LNYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL 66
+ V V FD+ LL N+ + + ++ E
Sbjct: 1 MREVKLVTFDVWNTLLDLNIMLDEF-SHQLAKISGLHIKDVANAVIEVRNEIKKMRAQAS 59
Query: 67 KLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAG 124
+ V+ GS + + K ++ A R + LV E + K G
Sbjct: 60 EDPRKVLTGSQEALAGKLKVDVELVKRATARAILNVD--ESLVLEGTKEALQFVKERG 115
>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural
genomic protein structure initiative, midwest center for
structural genomics, MCSG; HET: G1P; 2.00A {Escherichia
coli} SCOP: c.108.1.2
Length = 206
Score = 55.4 bits (134), Expect = 3e-10
Identities = 15/105 (14%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
+ +++ L + + +++ + + + H+ L S ++ KP
Sbjct: 95 EVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYL-SQ--DLGMRKPEA 151
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
++ + P S + F+D + + GA G++ ++V D
Sbjct: 152 RIYQHVLQAEGFSP--SDTVFFDDNADNIEGANQLGITSILVKDK 194
>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily,
struct genomics, PSI-2, protein structure initiative;
HET: MSE; 2.40A {Porphyromonas gingivalis}
Length = 211
Score = 52.4 bits (126), Expect = 4e-09
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 10/111 (9%)
Query: 28 IGALRLINHLHKHNIPFAIATSSAKESFELKTSRHK-----DTLKLFHHVVLGSADPEVK 82
+ + + +++ +L S F V S ++
Sbjct: 91 SAEKFDYIDSLRPDYRLFLLSNTNPYVLDLAMSPRFLPSGRTLDSFFDKVYA-SC--QMG 147
Query: 83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
+ KP D+FL KP + L +D P V A+ G +
Sbjct: 148 KYKPNEDIFLEMIADSGMKP--EETLFIDDGPANVATAERLGFHTYCPDNG 196
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.10A {Streptococcus pneumoniae}
SCOP: c.108.1.6
Length = 207
Score = 52.2 bits (126), Expect = 5e-09
Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 7/102 (6%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA ++ + I I T K + + F ++ ++ KP+P
Sbjct: 89 GAREVLAWADESGIQQFIYTH--KGNNAFTILKDLGVESYFTEIL--TSQ-SGFVRKPSP 143
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
+ ++ D V A+ +G+ +
Sbjct: 144 EAATYLLDKYQLNS--DNTYYIGDRTLDVEFAQNSGIQSINF 183
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.00A {Bacteroides
fragilis nctc 9343}
Length = 225
Score = 52.2 bits (126), Expect = 6e-09
Identities = 28/129 (21%), Positives = 48/129 (37%), Gaps = 14/129 (10%)
Query: 29 GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
L + HL K I I ++ K L R+ F ++ + +V KP
Sbjct: 93 DTLPTLTHLKKQGIRIGIIST--KYRFRILSFLRNHMPDDWFDIII--GGE-DVTHHKPD 147
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVP----DPTVPKHRTEAA 143
P+ L+A R P+ + L D+ A AAG+S V +
Sbjct: 148 PEGLLLAIDRLKACPE--EVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEF--QAYPY 203
Query: 144 DLVLNSLEE 152
D ++++L +
Sbjct: 204 DRIISTLGQ 212
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold,
hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Length = 240
Score = 51.8 bits (124), Expect = 8e-09
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 7/120 (5%)
Query: 34 INHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLV 93
+ L AI ++ E + + ++ + SAD ++K KP P ++
Sbjct: 114 LEKLKSAGYIVAILSNGNDEMLQ-AALKASKLDRVLDSCL--SAD-DLKIYKPDPRIYQF 169
Query: 94 AAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHR-TEAADLVLNSLEE 152
A R P++ + GA G + V + P +NSL E
Sbjct: 170 ACDRLGVN--PNEVCFVSSNAWDLGGAGKFGFNTVRINRQGNPPEYEFAPLKHQVNSLSE 227
>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP:
c.108.1.22 PDB: 1zs9_A
Length = 261
Score = 51.7 bits (123), Expect = 1e-08
Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 11/128 (8%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHK--DTLKLFHHVVLGSADPEVKQGKP 86
+ + + + I +S + E+ +L D L+L D ++ K
Sbjct: 134 DVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHF----DTKI-GHKV 188
Query: 87 APDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV--PDPTVPKHRTEAAD 144
+ + A + L D A+ A + +V P +
Sbjct: 189 ESESYRKIADSIGCST--NNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYY 246
Query: 145 LVLNSLEE 152
++ S E
Sbjct: 247 SLITSFSE 254
>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.70A {Pyrococcus horikoshii}
Length = 241
Score = 51.7 bits (124), Expect = 1e-08
Identities = 30/131 (22%), Positives = 47/131 (35%), Gaps = 10/131 (7%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA +++ L + I T K + F HV++ KP P
Sbjct: 98 GARKVLIRLKELGYELGIITDGNPVKQWEKI-LRLELDDFFEHVIISD---FEGVKKPHP 153
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEA---AD 144
+F A K F +P + L+ D + + GAK GM V + E AD
Sbjct: 154 KIFKKALKAF--NVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELEYRKYAD 211
Query: 145 LVLNSLEEFKP 155
+++LE
Sbjct: 212 YEIDNLESLLE 222
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.51A {Lactobacillus delbrueckii}
Length = 240
Score = 51.1 bits (123), Expect = 1e-08
Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 19/138 (13%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTL--KLFHH---VVLGSADPEVKQ 83
G L L+ +L + + A+ ++ K + L +LF LG +
Sbjct: 114 GILDLMKNLRQKGVKLAVVSN--------KPNEAVQVLVEELFPGSFDFALGEKSGIRR- 164
Query: 84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD--PTVPKHRTE 141
KPAPD+ K KC+ D+ + A+ + M + V +VP +
Sbjct: 165 -KPAPDMTSECVKVLGVPRD--KCVYIGDSEIDIQTARNSEMDEIAVNWGFRSVPFLQKH 221
Query: 142 AADLVLNSLEEFKPELYG 159
A +++++ E+ + + G
Sbjct: 222 GATVIVDTAEKLEEAILG 239
>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding
site, enzyme function initiativ; 1.65A {Bacteroides
thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A
Length = 229
Score = 51.0 bits (122), Expect = 2e-08
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 9/109 (8%)
Query: 29 GALRLINHLHKHNIPFAIA-TSSAKESFELKTS---RHKDTLKLFHHVVLGSADPEVKQG 84
L L+ L + + + ++ T+ + K + R F L S E+K
Sbjct: 116 YKLDLLLKLREKYVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDYFEKTYL-SY--EMKMA 172
Query: 85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
KP P++F + P + +D+ A+ G+S
Sbjct: 173 KPEPEIFKAVTEDAGIDP--KETFFIDDSEINCKVAQELGISTYTPKAG 219
>3ib6_A Uncharacterized protein; structural genomics, unknown function,
PSI-2, protein struct initiative; 2.20A {Listeria
monocytogenes}
Length = 189
Score = 50.6 bits (121), Expect = 2e-08
Identities = 19/142 (13%), Positives = 47/142 (33%), Gaps = 15/142 (10%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDT--LKLFHHVVLGSADPE-VKQGK 85
A + + + AI +++A E+ + + F + +++ + K K
Sbjct: 38 NAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEK 97
Query: 86 PAPDVFLVAAKRFDEKPQPSKCLVFEDAPNG-VLGAKAAGMSCVMVPDPTVPKHRTEA-- 142
P +F + ++ ++ + ++GA AG+ + + +P V
Sbjct: 98 PDKTIFDFTLNAL--QIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERLPL 155
Query: 143 -------ADLVLNSLEEFKPEL 157
L + E L
Sbjct: 156 VAPPFVIPVWDLADVPEALLLL 177
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics,
PSI-2, protein structure initiative, joint center
structural genomics; HET: MSE; 1.50A {Lactobacillus
plantarum} SCOP: c.108.1.6
Length = 209
Score = 50.2 bits (121), Expect = 3e-08
Identities = 23/125 (18%), Positives = 40/125 (32%), Gaps = 9/125 (7%)
Query: 29 GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
G L L + I TS + + R + + SAD + + KP
Sbjct: 87 GITSLFEQLPS-ELRLGIVTS--QRRNELESGMRSYPFMMRMAVTI--SAD-DTPKRKPD 140
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
P L A ++ + PQ L D+ + A+AA + + P +
Sbjct: 141 PLPLLTALEKVNVAPQ--NALFIGDSVSDEQTAQAANVDFGLAVWGMDPNADHQKVAHRF 198
Query: 148 NSLEE 152
+
Sbjct: 199 QKPLD 203
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP:
c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Length = 232
Score = 49.9 bits (119), Expect = 4e-08
Identities = 22/125 (17%), Positives = 39/125 (31%), Gaps = 7/125 (5%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
+ L + + AI ++ + +S + H F H++ S D V+ KP
Sbjct: 99 EVPDSLRELKRRGLKLAILSNGSPQSID-AVVSHAGLRDGFDHLL--SVD-PVQVYKPDN 154
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTE-AADLVL 147
V+ +A + S L GA+ G + D +
Sbjct: 155 RVYELAEQALG--LDRSAILFVASNAWDATGARYFGFPTCWINRTGNVFEEMGQTPDWEV 212
Query: 148 NSLEE 152
SL
Sbjct: 213 TSLRA 217
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 49.5 bits (119), Expect = 5e-08
Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 29 GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
G L++ L + +ATS K F + H F +V S D ++
Sbjct: 90 GIEALLSSLKDYGFHLVVATS--KPTVFSKQILEHFKLAFYFDAIVGSSLDGKLS---TK 144
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
DV A + + K ++ D V+GA + + V
Sbjct: 145 EDVIRYAMESLNIKS--DDAIMIGDREYDVIGALKNNLPSIGV 185
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 48.8 bits (117), Expect = 1e-07
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 29 GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
++ L+K+ +ATS K F R+ D + F ++ + D
Sbjct: 114 NMKEILEMLYKNGKILLVATS--KPTVFAETILRYFDIDRYFKYIAGSNLDGTRV---NK 168
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
+V + K K ++ D ++GAK G+ + V
Sbjct: 169 NEVIQYVLDLCNVKD-KDKVIMVGDRKYDIIGAKKIGIDSIGV 210
>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU
sensitivity of transcription elongation II; 1.70A
{Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*
Length = 282
Score = 48.6 bits (115), Expect = 1e-07
Identities = 18/157 (11%), Positives = 40/157 (25%), Gaps = 8/157 (5%)
Query: 8 NYVTHVIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK 67
N + + +L L + K + + T++ K
Sbjct: 128 NRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKID-KLWLFTNAYKNHAIRCLRLLGIADL 186
Query: 68 LFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSC 127
+ + KP F A K +D+ + GM
Sbjct: 187 FDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLAR-YENAYFIDDSGKNIETGIKLGMKT 245
Query: 128 VMV---PDPTVPKHRTEAADLVLNSLEEFK---PELY 158
+ + +T +V++ + E +L+
Sbjct: 246 CIHLVENEVNEILGQTPEGAIVISDILELPHVVSDLF 282
>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic;
probable 2-haloalkanoic acid dehalogenase, hydrolase,
structural genomics; 2.40A {Sulfolobus tokodaii}
Length = 220
Score = 48.2 bits (115), Expect = 1e-07
Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 17/131 (12%)
Query: 29 GALRLINHLHKHNIPFAIAT-SSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
L + L + A+ + +S + L+ D K F + L E+K KP
Sbjct: 99 DTLEFLEGLKSNGYKLALVSNASPRVKTLLEKF---DLKKYFDALALSY---EIKAVKPN 152
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLV 146
P +F A + + D +GAK + + +++
Sbjct: 153 PKIFGFALAKV-----GYPAVHVGDIYELDYIGAKRSYVDPILL----DRYDFYPDVRDR 203
Query: 147 LNSLEEFKPEL 157
+ +L E ++
Sbjct: 204 VKNLREALQKI 214
>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast
structural genom consortium, NESG, unknown function;
1.59A {Pyrococcus horikoshii} PDB: 1x42_A
Length = 234
Score = 47.8 bits (114), Expect = 2e-07
Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
+ ++ L + T S E LF + +++ E KP P
Sbjct: 104 EVVEVLKSLKGK-YHVGMITDSDTEQAMAFL-DALGIKDLFDSIT--TSE-EAGFFKPHP 158
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
+F +A K+ + + + D P G+K GM+ +++ + + D ++
Sbjct: 159 RIFELALKKA--GVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIV 216
Query: 148 NSLEE 152
+ L E
Sbjct: 217 SDLRE 221
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic
process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB:
2w11_A
Length = 201
Score = 47.1 bits (112), Expect = 3e-07
Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 9/115 (7%)
Query: 39 KHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRF 98
++ + + + L+ F + VK+ KP+P V+
Sbjct: 86 SEIAEVYALSNGSINEVK-QHLERNGLLRYFKGIFSA---ESVKEYKPSPKVYKYFLDSI 141
Query: 99 DEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTE-AADLVLNSLEE 152
+ + V+GAK AGM + V D+++N +E
Sbjct: 142 G----AKEAFLVSSNAFDVIGAKNAGMRSIFVNRKNTIVDPIGGKPDVIVNDFKE 192
>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural
genomics, joint center for structural genomics, J
protein structure initiative, PSI-2; 1.90A {Mus
musculus} SCOP: c.108.1.6 PDB: 2w4m_A
Length = 260
Score = 47.5 bits (113), Expect = 3e-07
Identities = 24/129 (18%), Positives = 48/129 (37%), Gaps = 10/129 (7%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
++ L K + + T+ +++ K F +V+G E K+ KPAP
Sbjct: 125 DVKAMLTELRKE-VRLLLLTNGDRQTQREKIEACA-CQSYFDAIVIGG---EQKEEKPAP 179
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGM--SCVMVPDPTVPKHRTEAADL 145
+F +P C++ D + G AG+ + + VP +
Sbjct: 180 SIFYHCCDLLGVQP--GDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHY 237
Query: 146 VLNSLEEFK 154
+++S+ E
Sbjct: 238 MVSSVLELP 246
>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3,
haloacid dehalogenase-like hydrolase domain containin
structural genomics; 1.55A {Homo sapiens}
Length = 263
Score = 47.1 bits (112), Expect = 4e-07
Identities = 25/139 (17%), Positives = 39/139 (28%), Gaps = 23/139 (16%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLK------LFHHVVLGSADPEVK 82
GA + + A+ ++ R + L F V+
Sbjct: 110 GAEDTLRECRTRGLRLAVISNF--------DRRLEGILGGLGLREHFDFVLTSE---AAG 158
Query: 83 QGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTE 141
KP P +F A + +P D G +A GM +V P
Sbjct: 159 WPKPDPRIFQEALRLAHMEP--VVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVR 216
Query: 142 ---AADLVLNSLEEFKPEL 157
+ +L SL P L
Sbjct: 217 DSVPKEHILPSLAHLLPAL 235
>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter
autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A*
1aq6_A
Length = 253
Score = 46.1 bits (109), Expect = 1e-06
Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 10/107 (9%)
Query: 61 RHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGA 120
+ F V+ S D + KP PD + + + P++ L V GA
Sbjct: 126 ANAGLTDSFDAVI--SVD-AKRVFKPHPDSYALVEEVLGVT--PAEVLFVSSNGFDVGGA 180
Query: 121 KAAGMSCVMV-----PDPTVPKHRTEAADLVLNSLEEFKPELYGLPP 162
K G S V A L + + E Y P
Sbjct: 181 KNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAP 227
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Aquifex
aeolicus} PDB: 2yy6_A
Length = 222
Score = 45.6 bits (109), Expect = 1e-06
Identities = 23/130 (17%), Positives = 42/130 (32%), Gaps = 9/130 (6%)
Query: 29 GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
+ L A+ ++ K E K + F +V D + KP+
Sbjct: 87 EIPYTLEALKSKGFKLAVVSN--KLEELSKKILDILNLSGYFDLIV--GGD-TFGEKKPS 141
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
P L + E+P+ K L+ D + K AG + V ++ D L
Sbjct: 142 PTPVLKTLEILGEEPE--KALIVGDTDADIEAGKRAGTKTALALWGYVKL-NSQIPDFTL 198
Query: 148 NSLEEFKPEL 157
+ + +
Sbjct: 199 SRPSDLVKLM 208
>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB:
3i76_A
Length = 238
Score = 44.7 bits (106), Expect = 3e-06
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 7/127 (5%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
GA LI++L + I T+ + + F + + + KP
Sbjct: 107 GAFDLISNLQQQ-FDLYIVTNGVSHTQYKRLRDS-GLFPFFKDIFVSE---DTGFQKPMK 161
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
+ F +R + L+ D+ + G + AG+ + P +
Sbjct: 162 EYFNYVFERIPQ-FSAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEI 220
Query: 148 NSLEEFK 154
LEE
Sbjct: 221 RKLEELY 227
>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase
superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A
{Pseudomonas}
Length = 240
Score = 44.4 bits (105), Expect = 4e-06
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 17/135 (12%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
+ + +L KH I ++ + F+L ++ F H++ +A +V KP P
Sbjct: 103 DTVEALQYLKKH-YKLVILSNIDRNEFKLSNAKLGV---EFDHII--TAQ-DVGSYKPNP 155
Query: 89 DVFLVAAKRFDE-KPQPSKCLVFEDAPNG-VLGAKAAGMSCVMV--------PDPTVPKH 138
+ F + + L ++ + A AG+ + T
Sbjct: 156 NNFTYMIDALAKAGIEKKDILHTAESLYHDHIPANDAGLVSAWIYRRHGKEGYGATHVPS 215
Query: 139 RTEAADLVLNSLEEF 153
R D NS+ E
Sbjct: 216 RMPNVDFRFNSMGEM 230
>2hsz_A Novel predicted phosphatase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP:
c.108.1.6
Length = 243
Score = 42.6 bits (101), Expect = 1e-05
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 12/131 (9%)
Query: 29 GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
+ L A+ T+ K LF ++ + + KP
Sbjct: 118 NVKETLEALKAQGYILAVVTN--KPTKHVQPILTAFGIDHLFSEML--GGQ-SLPEIKPH 172
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD---PTVPKHRTEAAD 144
P F +F P+ + L D+ N + A +AG + V + +P D
Sbjct: 173 PAPFYYLCGKFGLYPK--QILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIP-IAQSKPD 229
Query: 145 LVLNSLEEFKP 155
+ + +
Sbjct: 230 WIFDDFADILK 240
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola
haloacid dehalogenase-like, PSI; 1.74A {Streptococcus
pneumoniae} SCOP: c.108.1.6
Length = 210
Score = 41.0 bits (97), Expect = 4e-05
Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 29 GALRLINHLHKHNIPFAIATSSAK-ESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
+ L+ L + P I T+ K S +++ + F + + PE
Sbjct: 88 QIIDLLEELSS-SYPLYITTT--KDTSTAQDMAKNLEIHHFFDGIY--GSSPE---APHK 139
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMV 130
DV A + P + ++ D +LGA+ G+ + +
Sbjct: 140 ADVIHQALQTHQ--LAPEQAIIIGDTKFDMLGARETGIQKLAI 180
>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2,
protein structure initiative; 1.70A {Bacteroides
thetaiotaomicron}
Length = 240
Score = 39.7 bits (93), Expect = 2e-04
Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
A ++ +L I ++ +E K + F ++L ++ KP P
Sbjct: 111 HAKEVLEYLAPQ-YNLYILSNGFRELQSRKMRSAG-VDRYFKKIILSE---DLGVLKPRP 165
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLVL 147
++F A + + L+ D+ + GA GM + T +
Sbjct: 166 EIFHFALSATQSEL--RESLMIGDSWEADITGAHGVGMHQAFY-NVTERTVFPFQPTYHI 222
Query: 148 NSLEEFK 154
+SL+E
Sbjct: 223 HSLKELM 229
>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST
genomics, joint center for structural genomics, JCSG;
1.81A {Xanthomonas campestris PV}
Length = 251
Score = 38.5 bits (89), Expect = 4e-04
Identities = 16/140 (11%), Positives = 37/140 (26%), Gaps = 20/140 (14%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
G + + + + T E K + LF + + S + P
Sbjct: 116 GVREAVAAI-AADYAVVLITKGDLFHQEQKIEQSG-LSDLFPRIEVVS--------EKDP 165
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAP-NGVLGAKAAGMSCVMVPDPTVPKHRTEAADLV- 146
+ FD + + ++ ++ + V A G + P H +
Sbjct: 166 QTYARVLSEFDLPAE--RFVMIGNSLRSDVEPVLAIGGWGIYTPYAVTWAHEQDHGVAAD 223
Query: 147 ------LNSLEEFKPELYGL 160
+ + + L
Sbjct: 224 EPRLREVPDPSGWPAAVRAL 243
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase,
protein phosphatase, hydrolase, magne metal-binding;
1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Length = 187
Score = 38.1 bits (88), Expect = 4e-04
Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 10/104 (9%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAP 88
++ L +P A A+ +++ + + LF + V P K
Sbjct: 72 EVPEVLKRLQSLGVPGAAASRTSEIEGAN---QLLELFDLFRYFVHREIYPGSK-----I 123
Query: 89 DVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPD 132
F ++ S+ + F+D ++ G++C+ + +
Sbjct: 124 THFERLQQKTGIPF--SQMIFFDDERRNIVDVSKLGVTCIHIQN 165
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 38.3 bits (88), Expect = 5e-04
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 13 VIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIATS 49
+ D+D L+ A +I L +S
Sbjct: 5 IFLDIDKTLIPGYEPDPAKPIIEELKDMGFEIIFNSS 41
>2hx1_A Predicted sugar phosphatases of the HAD superfamily;
ZP_00311070.1, possible sugar phosphatase, structural
genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}
Length = 284
Score = 38.0 bits (89), Expect = 7e-04
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Query: 2 NISQVLNYVTHVIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIAT 48
+ +L + FD G L L G ++L + I T
Sbjct: 6 SFKSLLPKYKCIFFDAFGVLKTYNGLLPGIENTFDYLKAQGQDYYIVT 53
>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein),
struct genomics, PSI, protein structure initiative;
2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22
Length = 253
Score = 37.1 bits (85), Expect = 0.001
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 2/76 (2%)
Query: 78 DPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDPTVPK 137
D K + + K S+ L D P + A G++ + P
Sbjct: 180 DINTSGKKTETQSYANILRDIGAKA--SEVLFLSDNPLELDAAAGVGIATGLASRPGNAP 237
Query: 138 HRTEAADLVLNSLEEF 153
V + E
Sbjct: 238 VPDGQKYQVYKNFETL 253
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP:
c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A*
2b1q_A* 2b1r_A* 2d2v_A*
Length = 244
Score = 36.8 bits (86), Expect = 0.001
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 13 VIFDMDGLLLGYNLAIGALRLINHLHKHNIPFAIAT 48
+I D+D +G A+ L+ + N A AT
Sbjct: 6 LISDLDNTWVGDQQALEHLQEYLGDRRGNFYLAYAT 41
>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural
genomics, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI-2; 1.72A {Homo sapiens} PDB:
2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*
Length = 306
Score = 36.1 bits (84), Expect = 0.002
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 2 NISQVLNYVTHVIFDMDGLL-LGYNLAIGALRLINHLHKHNIPFAIAT 48
+ VL V+FD DG+L G GA L+ L + +
Sbjct: 13 ALRDVLGRAQGVLFDCDGVLWNGERAVPGAPELLERLARAGKAALFVS 60
>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG,
protein structure initiative, joint center for
structural G hydrolase; 2.40A {Thermotoga maritima}
SCOP: c.108.1.14 PDB: 1pw5_A*
Length = 271
Score = 36.0 bits (84), Expect = 0.003
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 5 QVLNYVTHVIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIAT 48
VL+ + I DMDG L +L G+L + L + N F T
Sbjct: 12 HVLDKIELFILDMDGTFYLDDSLLPGSLEFLETLKEKNKRFVFFT 56
Score = 31.4 bits (72), Expect = 0.092
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 21/92 (22%)
Query: 78 DPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPN-GVLGAKAAGMSCVMV------ 130
P++ GKP P V V +++F + + D V K AG+ ++V
Sbjct: 188 KPDLIAGKPNPLVVDVISEKFGVP--KERMAMVGDRLYTDVKLGKNAGIVSILVLTGETT 245
Query: 131 -----PDPTVPKHRTEAADLVLNSLEEFKPEL 157
T P D V +L E +
Sbjct: 246 PEDLERAETKP-------DFVFKNLGELAKAV 270
>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos
phosphatase; hydrolase; 1.92A {Homo sapiens}
Length = 271
Score = 35.6 bits (83), Expect = 0.004
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNG-VLGAKAAGMSCVMV----PDPTVPKH 138
GKP+P+ F A + + + ++ D G V GA+ GM + V P+ H
Sbjct: 189 GKPSPEFFKSALQAIG--VEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTGKFRPSDEHH 246
Query: 139 RTEAADLVLNSLEEFKPEL 157
AD +++L E L
Sbjct: 247 PEVKADGYVDNLAEAVDLL 265
Score = 33.3 bits (77), Expect = 0.020
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 3 ISQVLNYVTHVIFDMDGLL-----LGYNLAIGALRLINHLHKHNIPFAIATSSAKES 54
+ L V V+ D+ G+L G G++ + L + + T+ + S
Sbjct: 5 WGKRLAGVRGVLLDISGVLYDSGAGGGTAIAGSVEAVARLKRSRLKVRFCTNESAAS 61
>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein,
PSI, MCSG, structural genomi protein structure
initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae}
PDB: 3rf6_A*
Length = 352
Score = 35.5 bits (81), Expect = 0.004
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 13 VIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIAT 48
FD+DG L G GA + L+++ IP+ + T
Sbjct: 16 FAFDIDGVLFRGKKPIAGASDALKLLNRNKIPYILLT 52
>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2,
protein structure initiative, PSI, center for eukaryotic
structural genomics, CESG; 2.20A {Mus musculus} PDB:
3hlt_A
Length = 259
Score = 34.8 bits (81), Expect = 0.006
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 7/79 (8%)
Query: 84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNG-VLGAKAAGMSCVMV----PDPTVPKH 138
GKP FL A + D P + ++ D V GA+ GM ++V +
Sbjct: 178 GKPEKTFFLEALRDAD--CAPEEAVMIGDDCRDDVDGAQNIGMLGILVKTGKYKAADEEK 235
Query: 139 RTEAADLVLNSLEEFKPEL 157
L S +
Sbjct: 236 INPPPYLTCESFPHAVDHI 254
Score = 34.4 bits (80), Expect = 0.010
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 4 SQVLNYVTHVIFDMDGLLLGYNLAI-GALRLINHLHKHNIPFAIATSSAKES 54
S + V+ D++G L + A+ GA + L ++ T++ KE+
Sbjct: 1 SAARRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMVRFVTNTTKET 52
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 35.0 bits (80), Expect = 0.007
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 13 VIFDMDGLLLGYNLAIG-ALRLINHLHKHNIPFAIATS 49
V D+DG LL +G A + L +P T+
Sbjct: 3 VFTDLDGTLLDERGELGPAREALERLRALGVPVVPVTA 40
>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2,
NYSGXRC, protein structure initia YORK SGX research
center for structural genomics; 1.60A {Bacillus
subtilis}
Length = 266
Score = 34.4 bits (80), Expect = 0.009
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 1 MNISQVLNYVTHVIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIAT 48
M++ + D+DG + G A + L +P+ T
Sbjct: 1 MSLKTY----KGYLIDLDGTMYNGTEKIEEACEFVRTLKDRGVPYLFVT 45
>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD
superfamily, structural genom riken structural
genomics/proteomics initiative; 1.85A {Pyrococcus
horikoshii}
Length = 263
Score = 34.4 bits (80), Expect = 0.010
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 13 VIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIAT 48
+IFDMDG L G G LI L + IPFA T
Sbjct: 4 IIFDMDGVLYRGNRAIPGVRELIEFLKERGIPFAFLT 40
Score = 29.0 bits (66), Expect = 0.57
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 23/86 (26%)
Query: 84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPN-GVLGAKAAGMSCVMV-----------P 131
GKP ++ V + F + + D + + AK GM +MV
Sbjct: 186 GKPNEPMYEVVREMFP----GEELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIKK 241
Query: 132 DPTVPKHRTEAADLVLNSLEEFKPEL 157
P DLVL S+ E L
Sbjct: 242 SEYKP-------DLVLPSVYELIDYL 260
>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein,
struc genomics, PSI, protein structure initiative;
2.80A {Enterococcus faecalis} SCOP: c.108.1.14
Length = 264
Score = 34.4 bits (80), Expect = 0.010
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 13 VIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIAT 48
+ D+DG + LG R + L + ++PF T
Sbjct: 8 YLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVT 44
>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus
fulgidus}
Length = 268
Score = 34.4 bits (80), Expect = 0.010
Identities = 5/46 (10%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 4 SQVLNYVTHVIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIAT 48
+ ++ I D+DG + + + L + +
Sbjct: 2 NAMMPDKKGYIIDIDGVIGKSVTPIPEGVEGVKKLKELGKKIIFVS 47
Score = 32.1 bits (74), Expect = 0.057
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 78 DPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPN-GVLGAKAAGMSCVMV------ 130
+P+V GKP+ + A V D + V KA G V+V
Sbjct: 180 EPDVVVGKPSEVIMREALDILGLD--AKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTT 237
Query: 131 --PDPTVPKHRTEAADLVLNSLEEFKPELYG 159
+ + D V NSL++ L G
Sbjct: 238 RENLDQMIERHGLKPDYVFNSLKDMVEALEG 268
>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP
phosphatase, carbohydrate metabolism, hydrolase; 1.8A
{Escherichia coli} SCOP: c.108.1.14
Length = 250
Score = 34.4 bits (80), Expect = 0.010
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 13 VIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIAT 48
VI D+DG L+ GA ++ + +P + T
Sbjct: 6 VICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLT 42
Score = 29.8 bits (68), Expect = 0.31
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 84 GKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPN-GVLGAKAAGMSCVMV 130
GKP+P + A + + ++ D +L AG+ ++V
Sbjct: 175 GKPSPWIIRAALNKMQ--AHSEETVIVGDNLRTDILAGFQAGLETILV 220
>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily,
GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase;
HET: FX1; 1.68A {Bordetella bronchiseptica}
Length = 179
Score = 33.7 bits (78), Expect = 0.012
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVP----DPTVPKHRT 140
KP P ++ A+R+D + D+ + A AG + +V T+ +
Sbjct: 101 KPLPGMYRDIARRYDVD--LAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGL 158
Query: 141 EAADLVLNSLEEF 153
V L
Sbjct: 159 PEGTRVCEDLAAV 171
>3epr_A Hydrolase, haloacid dehalogenase-like family; structural
genomics, unknown function, HAD superfamily hydro
PSI-2; 1.55A {Streptococcus agalactiae serogroup V}
PDB: 1ys9_A 1wvi_A 1ydf_A
Length = 264
Score = 34.0 bits (79), Expect = 0.013
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 13 VIFDMDG-LLLGYNLAIGALRLINHLHKHNIPFAIAT 48
+ D+DG + G + R I L + IP+ + T
Sbjct: 8 YLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVT 44
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein,
phophatase-like domain; HET: 1PE PG4 PGE; 2.26A
{Escherichia coli K12} SCOP: c.108.1.10
Length = 275
Score = 33.9 bits (77), Expect = 0.013
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 13 VIFDMDGLLLGYNLAI--GALRLINHLHKHNIPFAIATS 49
V D+DG LL + A + L + N+P + +S
Sbjct: 12 VFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVILCSS 50
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD
superfamily, ST genomics, PSI-2, protein structure
initiative; 2.00A {Bacteroides thetaiotaomicron}
Length = 234
Score = 32.9 bits (75), Expect = 0.028
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 13/112 (11%)
Query: 29 GALRLINHLHKH-NIPFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPA 87
G + L + +AT E K R F H+ + S
Sbjct: 109 GVKETLKTLKETGKYKLVVATKGDLLDQENKLERSG-LSPYFDHIEVMS--------DKT 159
Query: 88 PDVFLVAAKRFDEKPQPSKCLVFEDAPNG-VLGAKAAGMSCVMVPDPTVPKH 138
+L PS+ L+ ++ + + G V +P + KH
Sbjct: 160 EKEYLRLLSILQ--IAPSELLMVGNSFKSDIQPVLSLGGYGVHIPFEVMWKH 209
>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism,
detoxification, magnesium, metal-binding, peroxisome;
HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P*
1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A*
1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*
Length = 555
Score = 32.6 bits (74), Expect = 0.049
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 85 KPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVMVPDP 133
KP P ++ K PS+ + +D + A+ GM ++V D
Sbjct: 160 KPEPQIYKFLLDTL--KASPSEVVFLDDIGANLKPARDLGMVTILVQDT 206
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.051
Identities = 17/112 (15%), Positives = 32/112 (28%), Gaps = 28/112 (25%)
Query: 43 PFAIATSSAKESFELKTSRHKDTLKLFHHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKP 102
P ++ S + + T+ F L + F P
Sbjct: 8 PLTLSHGSLEHVLLVPTASF------FIASQL-------------QEQFN------KILP 42
Query: 103 QPSKCLVFEDAPNGV--LGAKAAGMSCVMVPDPTVPKHRTEAADLVLNSLEE 152
+P++ +D P L K G + +P+ + +L L E
Sbjct: 43 EPTEGFAADDEPTTPAELVGKFLGY-VSSLVEPSKVGQFDQVLNLCLTEFEN 93
Score = 30.8 bits (69), Expect = 0.21
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 43/112 (38%)
Query: 3 ISQVLNY-VTHVIFDMDGLLLGYNLAIGALRLINHL-----HKHNIP--FAIATSSAKES 54
+ Q+ +Y VT + LG+ G LR ++L H + AIA + + ES
Sbjct: 243 VIQLAHYVVTAKL-------LGFT--PGELR--SYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 55 FELKTSRHKDTLK-LFHHVVLG----------SADPEVKQ-------GKPAP 88
F + + + LF +G S P + + G P+P
Sbjct: 292 FFVSVRK---AITVLFF---IGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Score = 26.2 bits (57), Expect = 8.0
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 13/78 (16%)
Query: 21 LLGYNLAIGALRLINHLHKHNIPFAIATSSAKESFE---LKTSRHKDTLKLFHHVVLGSA 77
L G NL + + + L + IPF S K F L + FH +L A
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPF----SERKLKFSNRFLPVASP------FHSHLLVPA 435
Query: 78 DPEVKQGKPAPDVFLVAA 95
+ + +V A
Sbjct: 436 SDLINKDLVKNNVSFNAK 453
>1l6r_A Hypothetical protein TA0175; structural genomics, putative
hydrolas midwest center for structural genomics, MCSG,
PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10
PDB: 1kyt_A
Length = 227
Score = 31.0 bits (71), Expect = 0.12
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 13 VIFDMDGLLLGYNLAI--GALRLINHLHKHNIPFAIAT 48
D+DG L + I A+ I K + ++ +
Sbjct: 8 AAIDVDGNLTDRDRLISTKAIESIRSAEKKGLTVSLLS 45
>2p11_A Hypothetical protein; putative haloacid dehalogenase-like
hydrolase, structural GE joint center for structural
genomics, JCSG; 2.20A {Burkholderia xenovorans}
Length = 231
Score = 30.1 bits (67), Expect = 0.22
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 26/152 (17%)
Query: 14 IFDMDGLLLGYNLAI----GALRLINHLHKHNIPFAIATSSAKESFELKTSRHKDTLKLF 69
+ M L+ Y A GAL + HL P I + K +R
Sbjct: 81 LLLMSSFLIDYPFASRVYPGALNALRHLGARG-PTVILSDGDVVFQPRKIARS-GLWDEV 138
Query: 70 HHVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGAKAAGMSCVM 129
VL E+ + E ++ +D + K A + +
Sbjct: 139 EGRVLIYIHKEL------------MLDQVMECYPARHYVMVDDKLRILAAMKKAWGARLT 186
Query: 130 VPDP----TVPKHRTEA----ADLVLNSLEEF 153
P + + AD+ + + +
Sbjct: 187 TVFPRQGHYAFDPKEISSHPPADVTVERIGDL 218
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116,
PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY
structural genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 30.2 bits (68), Expect = 0.26
Identities = 7/44 (15%), Positives = 10/44 (22%), Gaps = 8/44 (18%)
Query: 13 VIFDMDGLLLGYNL------AIGALR--LINHLHKHNIPFAIAT 48
V D D + + I L L + T
Sbjct: 25 VFCDFDETYFPHTIDEQKQQDIYELEDYLEQKSKDGELIIGWVT 68
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A
{Streptococcus mutans}
Length = 304
Score = 29.2 bits (66), Expect = 0.60
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 13 VIFDMDGLLLGYNLAI---GALRLINHLHKHNIPFAIAT 48
+ DMDG L + R++ L + +I F +A+
Sbjct: 40 IATDMDGTFLNSKGSYDHNRFQRILKQLQERDIRFVVAS 78
>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein,
hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19
PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*
Length = 211
Score = 27.7 bits (62), Expect = 1.6
Identities = 38/176 (21%), Positives = 57/176 (32%), Gaps = 39/176 (22%)
Query: 13 VIFDMDGLL---LGYNLAI-------GALRLINHLHKHNIPFAIATSSA--------KES 54
+ D DG + GY I G + + L K + T+ + +
Sbjct: 28 IFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQ 87
Query: 55 FELKTSRHKDTLKLF-----------HHVVLGSADPEVKQG----KPAPDVFLVAAKRFD 99
FE T +L HH + E +Q KP P + L A
Sbjct: 88 FETLTEWMDWSLADRDVDLDGIYYCPHHP--QGSVEEFRQVCDCRKPHPGMLLSARDYLH 145
Query: 100 EKPQPSKCLVFEDAPNGVLGAKAAGM-SCVMVPDPTVPKHRTE-AADLVLNSLEEF 153
+ + D + A AA + + V+V E AAD VLNSL +
Sbjct: 146 ID--MAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADL 199
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 27.8 bits (63), Expect = 1.6
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 13 VIFDMDGLLLGYNLAI--GALRLINHLHKHNIPFAIAT 48
+ D+DG + N I AL I IP + T
Sbjct: 6 ISIDIDGTITYPNRMIHEKALEAIRRAESLGIPIMLVT 43
>3dao_A Putative phosphatse; structural genomics, joint center for S
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Length = 283
Score = 27.6 bits (62), Expect = 2.1
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 13 VIFDMDG-LLLGYNLAIGA--LRLINHLHKHNIPFAIAT 48
+ D+DG L+ +L I + +I+ L I F + +
Sbjct: 24 IATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCS 62
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics,
isomerase, structural genomics consortium, SGC; 1.85A
{Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Length = 246
Score = 27.2 bits (59), Expect = 2.7
Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 2/46 (4%)
Query: 13 VIFDMDGLLLGYNLAIGA--LRLINHLHKHNIPFAIATSSAKESFE 56
++FD+DG L L LI S
Sbjct: 7 LLFDVDGTLTPPRLCQTDEMRALIKRARGAGFCVGTVGGSDFAKQV 52
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 26.4 bits (59), Expect = 5.2
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 13 VIFDMDGLLLGYNLAI--GALRLINHLHKHNIPFAIAT 48
+I D+DG L I A I K++ I T
Sbjct: 8 LILDIDGTLRDEVYGIPESAKHAIRLCQKNHCSVVICT 45
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 25.9 bits (57), Expect = 6.3
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 29 GALRLINHLHKHNIPFAIATSSAKE 53
G + +++H IPF + +
Sbjct: 81 GFREFVAFINEHEIPFYVISGGMDF 105
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase,
arginine degradation pathway, giardia lamblia, drug
target; 2.00A {Giardia intestinalis}
Length = 328
Score = 26.0 bits (58), Expect = 6.6
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 71 HVVLGSADPEVKQGKPAPDVFLVAAKRFDEKPQPSKCLVFEDAPNGVLGA 120
+ P+ K KP +V + + +F D G G
Sbjct: 188 ECHVCC--PDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGV 235
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns
helix, riken STR genomics/proteomics initiative, RSGI,
structural genomics; 1.90A {Thermus thermophilus} SCOP:
a.156.1.2 b.113.1.1 g.39.1.8
Length = 266
Score = 25.5 bits (57), Expect = 8.9
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 11 THVIFDMDGLLLGYN 25
T ++G L ++
Sbjct: 82 TRAALVLEGRTLYFH 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.404
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,625,730
Number of extensions: 152576
Number of successful extensions: 778
Number of sequences better than 10.0: 1
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 128
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)