BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy629
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XSA|A Chain A, Ogoga Apostructure
pdb|2XSB|A Chain A, Ogoga Pugnac Complex
Length = 447
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/165 (44%), Positives = 99/165 (60%), Gaps = 1/165 (0%)
Query: 1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
M++Y+Y PKDD RA WR Y LT L AA +G+ FY +L+P LD+TYS +
Sbjct: 31 MNTYIYGPKDDVHVRARWRVPYDAAGLARLTELRDAAAARGMVFYVSLAPCLDVTYSDPQ 90
Query: 61 EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL-GQ 119
+ A L +++Q+A+ G R LLFDDI S + EAD+ F SFA AQ ++N V HL G
Sbjct: 91 DRAALLARVDQLARAGLRNLVLLFDDIPSVLPEADRHRFDSFAEAQADLSNMVLRHLRGA 150
Query: 120 PKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
+ CPT+YC A + + S YL LGS L IDI WTGP++
Sbjct: 151 GHVVFCPTEYCGRMAGGDPRGSAYLQRLGSTLDPAIDIFWTGPEI 195
>pdb|2J4G|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
pdb|2J4G|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With N-Butyl-Thiazoline Inhibitor
Length = 715
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1 MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
M++Y+Y PKDD H A WR Y +EA L L++ A E +DF +A+ PG DI ++
Sbjct: 157 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 215
Query: 60 KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
++ L K E++ Q G R FA+ FDDI E + K Q + N + E Q
Sbjct: 216 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 266
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
K ++CPT+Y + + P N YL TLG KL I IMWTG +V
Sbjct: 267 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 313
>pdb|2J47|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-Glcnacase In Complex
With A Imidazole-Pugnac Hybrid Inhibitor
pdb|2W4X|A Chain A, Btgh84 In Complex With Stz
pdb|2W66|A Chain A, Btgh84 In Complex With Hq602
pdb|2W66|B Chain B, Btgh84 In Complex With Hq602
pdb|2W67|A Chain A, Btgh84 In Complex With Fma34
pdb|2W67|B Chain B, Btgh84 In Complex With Fma34
pdb|2WCA|A Chain A, Btgh84 In Complex With N-Butyl Pugnac
pdb|2XJ7|A Chain A, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XJ7|B Chain B, Btgh84 In Complex With 6-Acetamido-6-Deoxy-Castanospermine
pdb|2XM1|A Chain A, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM1|B Chain B, Btgh84 In Complex With N-Acetyl Gluconolactam
pdb|2XM2|A Chain A, Btgh84 In Complex With Lognac
pdb|2XM2|B Chain B, Btgh84 In Complex With Lognac
Length = 716
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1 MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
M++Y+Y PKDD H A WR Y +EA L L++ A E +DF +A+ PG DI ++
Sbjct: 158 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 216
Query: 60 KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
++ L K E++ Q G R FA+ FDDI E + K Q + N + E Q
Sbjct: 217 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 267
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
K ++CPT+Y + + P N YL TLG KL I IMWTG +V
Sbjct: 268 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 314
>pdb|2CHO|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
pdb|2CHO|B Chain B, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity
Length = 716
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1 MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
M++Y+Y PKDD H A WR Y +EA L L++ A E +DF +A+ PG DI ++
Sbjct: 158 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 216
Query: 60 KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
++ L K E++ Q G R FA+ FDDI E + K Q + N + E Q
Sbjct: 217 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 267
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
K ++CPT+Y + + P N YL TLG KL I IMWTG +V
Sbjct: 268 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 314
>pdb|2JIW|A Chain A, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
pdb|2JIW|B Chain B, Bacteroides Thetaiotaomicron Gh84 O-glcnacase In Complex
With 2-acetylamino-2-deoxy-1-epivalienamine
Length = 716
Score = 107 bits (267), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1 MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
M++Y+Y PKDD H A WR Y +EA L L++ A E +DF +A+ PG DI ++
Sbjct: 158 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 216
Query: 60 KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
++ L K E++ Q G R FA+ FDDI E + K Q + N + E Q
Sbjct: 217 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 267
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
K ++CPT+Y + + P N YL TLG KL I IMWTG +V
Sbjct: 268 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 314
>pdb|2VVN|A Chain A, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVN|B Chain B, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVS|A Chain A, Btgh84 Structure In Complex With Pugnac
pdb|2X0H|A Chain A, Btgh84 Michaelis Complex
pdb|2X0H|B Chain B, Btgh84 Michaelis Complex
pdb|4AIS|A Chain A, A Complex Structure Of Btgh84
pdb|4AIS|B Chain B, A Complex Structure Of Btgh84
Length = 737
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1 MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
M++Y+Y PKDD H A WR Y +EA L L++ A E +DF +A+ PG DI ++
Sbjct: 179 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 237
Query: 60 KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
++ L K E++ Q G R FA+ FDDI E + K Q + N + E Q
Sbjct: 238 EDRDLLLAKFEKMYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQ 288
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
K ++CPT+Y + + P N YL TLG KL I IMWTG +V
Sbjct: 289 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 335
>pdb|2WZI|A Chain A, Btgh84 D243n In Complex With 5f-Oxazoline
pdb|2WZI|B Chain B, Btgh84 D243n In Complex With 5f-Oxazoline
Length = 737
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1 MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
M++Y+Y PKDD H A WR Y +EA L L++ A E +DF +A+ PG DI ++
Sbjct: 179 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 237
Query: 60 KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
++ L K E++ Q G R FA+ FD+I E + K Q + N + E Q
Sbjct: 238 EDRDLLLAKFEKMYQLGVRSFAVFFDNISGEGTNPQK---------QAELLNYIDEKFAQ 288
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
K ++CPT+Y + + P N YL TLG KL I IMWTG +V
Sbjct: 289 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 335
>pdb|2WZH|A Chain A, Btgh84 D242n In Complex With Meumb-Derived Oxazoline
pdb|4AIU|A Chain A, A Complex Structure Of Btgh84
Length = 737
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 89/170 (52%), Gaps = 19/170 (11%)
Query: 1 MDSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSG 59
M++Y+Y PKDD H A WR Y +EA L L++ A E +DF +A+ PG DI ++
Sbjct: 179 MNTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK- 237
Query: 60 KEVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
++ L K E++ Q G R FA+ F+DI E + K Q + N + E Q
Sbjct: 238 EDRDLLLAKFEKMYQLGVRSFAVFFNDISGEGTNPQK---------QAELLNYIDEKFAQ 288
Query: 120 PK-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
K ++CPT+Y + + P N YL TLG KL I IMWTG +V
Sbjct: 289 VKPDINQLVMCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIMWTGDRV 335
>pdb|2CHN|A Chain A, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity - Nag-Thiazoline Complex
pdb|2CHN|B Chain B, Bacteroides Thetaiotaomicron Hexosaminidase With O-
Glcnacase Activity - Nag-Thiazoline Complex
Length = 716
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 85/169 (50%), Gaps = 19/169 (11%)
Query: 2 DSYLYAPKDDYKHRA-YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGK 60
++Y+Y PKDD H A WR Y +EA L L++ A E +DF +A+ PG DI ++ +
Sbjct: 159 NTYIYGPKDDPYHSAPNWRLPYPDKEAAQLQELVAVANENEVDFVWAIHPGQDIKWNK-E 217
Query: 61 EVATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQP 120
+ L K E+ Q G R FA+ FDDI E + K Q + N + E Q
Sbjct: 218 DRDLLLAKFEKXYQLGVRSFAVFFDDISGEGTNPQK---------QAELLNYIDEKFAQV 268
Query: 121 K-----FMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
K + CPT+Y + + P N YL TLG KL I I WTG +V
Sbjct: 269 KPDINQLVXCPTEYNKSWSNP---NGNYLTTLGDKLNPSIQIXWTGDRV 314
>pdb|2XPK|A Chain A, Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Selective
Against Lysosomal Hexosaminidases
pdb|2XPK|B Chain B, Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Selective
Against Lysosomal Hexosaminidases
Length = 594
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 87/167 (52%), Gaps = 9/167 (5%)
Query: 1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITY--SS 58
+++Y+YAPKDD HR WR+ Y E + + LI+A+ E +DF + +SPG+DI + +
Sbjct: 180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 239
Query: 59 GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
G+E L K E + G R FA+ +DDI+ + + +V F V +V
Sbjct: 240 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 295
Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
+P + CPT+Y + V N + Y + I++MWTGP V
Sbjct: 296 -KP-LITCPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 340
>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family
32 Carbohydrate-Binding Module In Tandem From
Clostridium Perfringens
Length = 737
Score = 96.3 bits (238), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Query: 1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITY--SS 58
+++Y+YAPKDD HR WR+ Y E + + LI+A+ E +DF + +SPG+DI + +
Sbjct: 180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 239
Query: 59 GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
G+E L K E + G R FA+ +DDI+ + + +V F V +V
Sbjct: 240 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 295
Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
+P + PT+Y + V N + Y + I++MWTGP V
Sbjct: 296 -KP-LITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 340
>pdb|2J62|A Chain A, Structure Of A Bacterial O-glcnacase In Complex With
Glcnacstatin
pdb|2J62|B Chain B, Structure Of A Bacterial O-glcnacase In Complex With
Glcnacstatin
pdb|2WB5|A Chain A, Glcnacstatins Are Nanomolar Inhibitors Of Human
O-Glcnacase Inducing Cellular Hyper-O-Glcnacylation
pdb|2WB5|B Chain B, Glcnacstatins Are Nanomolar Inhibitors Of Human
O-Glcnacase Inducing Cellular Hyper-O-Glcnacylation
Length = 594
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Query: 1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITY--SS 58
+++Y+YAPKDD HR WR+ Y E + + LI+A+ E +DF + +SPG+DI + +
Sbjct: 180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 239
Query: 59 GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
G+E L K E + G R FA+ +DDI+ + + +V F V +V
Sbjct: 240 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 295
Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
+P + PT+Y + V N + Y + I++MWTGP V
Sbjct: 296 -KP-LITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 340
>pdb|2CBI|A Chain A, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase
pdb|2CBI|B Chain B, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase
pdb|2CBJ|A Chain A, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase In
Complex With Pugnac
pdb|2CBJ|B Chain B, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase In
Complex With Pugnac
pdb|2V5C|A Chain A, Family 84 Glycoside Hydrolase From Clostridium
Perfringens, 2.1 Angstrom Structure
pdb|2V5C|B Chain B, Family 84 Glycoside Hydrolase From Clostridium
Perfringens, 2.1 Angstrom Structure
pdb|2VUR|A Chain A, Chemical Dissection Of The Link Between Streptozotocin, O-
Glcnac And Pancreatic Cell Death
pdb|2VUR|B Chain B, Chemical Dissection Of The Link Between Streptozotocin, O-
Glcnac And Pancreatic Cell Death
pdb|2X0Y|A Chain A, Screening-Based Discovery Of Drug-Like O-Glcnacase
Inhibitor Scaffolds
pdb|2X0Y|B Chain B, Screening-Based Discovery Of Drug-Like O-Glcnacase
Inhibitor Scaffolds
Length = 594
Score = 96.3 bits (238), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Query: 1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITY--SS 58
+++Y+YAPKDD HR WR+ Y E + + LI+A+ E +DF + +SPG+DI + +
Sbjct: 180 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 239
Query: 59 GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
G+E L K E + G R FA+ +DDI+ + + +V F V +V
Sbjct: 240 GEEDFNHLITKAESLYDMGVRSFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 295
Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
+P + PT+Y + V N + Y + I++MWTGP V
Sbjct: 296 -KP-LITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 340
>pdb|2YDQ|A Chain A, Cpoga D298n In Complex With Hoga-Derived O-Glcnac Peptide
pdb|2YDR|A Chain A, Cpoga D298n In Complex With P53-Derived O-Glcnac Peptide
pdb|2YDS|A Chain A, Cpoga D298n In Complex With Tab1-Derived O-Glcnac Peptide
Length = 590
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 9/167 (5%)
Query: 1 MDSYLYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITY--SS 58
+++Y+YAPKDD HR WR+ Y E + + LI+A+ E +DF + +SPG+DI + +
Sbjct: 182 LNTYIYAPKDDPYHREKWREPYPESEMQRMQELINASAENKVDFVFGISPGIDIRFDGDA 241
Query: 59 GKE-VATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHL 117
G+E L K E + G R FA+ +D+I+ + + +V F V +V
Sbjct: 242 GEEDFNHLITKAESLYDMGVRSFAIYWDNIQDKSAAKHAQVLNRFNEEFVKAKGDV---- 297
Query: 118 GQPKFMLCPTQYCSTRAVPNVKNSEYLNTLGSKLAKEIDIMWTGPKV 164
+P + PT+Y + V N + Y + I++MWTGP V
Sbjct: 298 -KP-LITVPTEYDTGAMVSNGQPRAYTRIFAETVDPSIEVMWTGPGV 342
>pdb|1KNW|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase
pdb|1KO0|A Chain A, Crystal Structure Of A D,L-Lysine Complex Of
Diaminopimelate Decarboxylase
Length = 425
Score = 29.6 bits (65), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 26/138 (18%)
Query: 26 EAEHLTGLISAAKEQ-----GIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRGF 80
+ EH GL +AA+EQ G + PG + SG L ++ V Q G R F
Sbjct: 240 DTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQSG----VLITQVRSVKQMGSRHF 295
Query: 81 ALLFDDIESEMSEADKEVFQSFAH-AQVSVTNEVFEHLGQPKFM----LCPTQ------- 128
L+ M A ++ S+ H + ++ EH + + LC +
Sbjct: 296 VLVDAGFNDLMRPA---MYGSYHHISALAADGRSLEHAPTVETVVAGPLCESGDVFTQQE 352
Query: 129 --YCSTRAVPNVKNSEYL 144
TRA+P VK +YL
Sbjct: 353 GGNVETRALPEVKAGDYL 370
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 28.5 bits (62), Expect = 1.6, Method: Composition-based stats.
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 17/104 (16%)
Query: 17 YWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFG 76
YW+D Y E E L L++A + YYA PG ++ + + ++ VA
Sbjct: 481 YWKDYYIWEMKEGLDKLLTARR------YYAYGPGYEVDNNDADIYSYVRSGFPDVAG-- 532
Query: 77 CRGFALLFDDIES--------EMSEADKEVFQSFAHAQVSVTNE 112
G L+ D S + D E + H + VT +
Sbjct: 533 -DGLVLMISDGTSGNVAGKWINSRQPDTEFYDLTGHIKEHVTTD 575
>pdb|2WTA|A Chain A, Acinetobacter Baumanii Nicotinamidase Pyrazinamidease
Length = 213
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 26 EAEH--LTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQ-VAQFGCRGFAL 82
EA+H +TGL KE+GID Y + D + + +K+ + V + C+G L
Sbjct: 126 EADHTTMTGLTGYLKERGIDTVYVVGIATDFCXVAWTALDAVKQGFKTLVIEDACKGIDL 185
>pdb|2PK9|B Chain B, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|D Chain D, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|B Chain B, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|D Chain D, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 293
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 1 MDSYLYA--PKDDYK-HRAYWRDLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYS 57
+DSY Y PK Y Y+R + L G +A+ ++ Y L P +DI
Sbjct: 201 LDSYSYVNRPKSGYNVLDKYYRRIV------QLVGSFNASPDKSRKVDYVLPPNIDIVSE 254
Query: 58 SGKEVATLK 66
SG + LK
Sbjct: 255 SGSQTTQLK 263
>pdb|2F3O|A Chain A, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
pdb|2F3O|B Chain B, Crystal Structure Of A Glycyl Radical Enzyme From
Archaeoglobus Fulgidus
Length = 776
Score = 27.3 bits (59), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 20 DLYSVEEAEHLTGLISAAKEQGIDFYYALSPGLDITYSSGKEVATLKRKLEQVAQFGCRG 79
D+Y + LT L+ D P + + + G + LKR E ++ GC
Sbjct: 341 DIYGNDATNELTYLMLEVT----DRLRLRQPNVHVRINKGSPESFLKRLAEAISS-GCNN 395
Query: 80 FALLFDD 86
AL FDD
Sbjct: 396 LALFFDD 402
>pdb|4IR0|A Chain A, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
pdb|4IR0|B Chain B, Crystal Structure Of Metallothiol Transferase Fosb 2 From
Bacillus Anthracis Str. Ames
Length = 148
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 63 ATLKRKLEQVAQFGCRGFALLFDDIESEMSEADKEVFQSFAHAQVSVTNEVFEHLGQ 119
A L K ++A F G + + +E ++ E+ QS+ H +VTNE +HL +
Sbjct: 29 AKLLVKGRKLAYFDLNGLWIALN-VEEDIPR--NEIKQSYTHXAFTVTNEALDHLKE 82
>pdb|3QE5|A Chain A, Complete Structure Of Streptococcus Mutans Antigen III
CARBOXY- Terminus
pdb|3QE5|B Chain B, Complete Structure Of Streptococcus Mutans Antigen III
CARBOXY- Terminus
Length = 516
Score = 26.2 bits (56), Expect = 8.3, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 47 ALSPGLDITYSSGKEVATLKRKLEQVAQF 75
A SPG D+TY + T K +A F
Sbjct: 87 AASPGFDVTYDNATNTVTFKATAATLATF 115
>pdb|1GNL|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
pdb|1GNL|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
X-Ray Structure At 1.25a Resolution Using Synchrotron
Radiation At A Wavelength Of 0.933a
pdb|1OA0|A Chain A, Reduced Hybrid Cluster Protein From Desulfovibrio
Desulfuricans X-Ray Structure At 1.25a Resolution
pdb|1OA0|B Chain B, Reduced Hybrid Cluster Protein From Desulfovibrio
Desulfuricans X-Ray Structure At 1.25a Resolution
pdb|1UPX|A Chain A, The Crystal Structure Of The Hybrid Cluster Protein From
Desulfovibrio Desulfuricans Containing Molecules In The
Oxidized And Reduced States.
pdb|1UPX|B Chain B, The Crystal Structure Of The Hybrid Cluster Protein From
Desulfovibrio Desulfuricans Containing Molecules In The
Oxidized And Reduced States
Length = 544
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKE 39
L PKD YK R Y + +H+ G I K+
Sbjct: 309 LVPPKDSYKDRVYTTGIVGFTGCKHIPGEIGEHKD 343
>pdb|1GN9|A Chain A, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
pdb|1GN9|B Chain B, Hybrid Cluster Protein From Desulfovibrio Desulfuricans
Atcc 27774 X-Ray Structure At 2.6a Resolution Using
Synchrotron Radiation At A Wavelength Of 1.722a
Length = 544
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 5 LYAPKDDYKHRAYWRDLYSVEEAEHLTGLISAAKE 39
L PKD YK R Y + +H+ G I K+
Sbjct: 309 LVPPKDSYKDRVYTTGIVGFTGCKHIPGEIGEHKD 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,947,445
Number of Sequences: 62578
Number of extensions: 186104
Number of successful extensions: 460
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 403
Number of HSP's gapped (non-prelim): 28
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)